Citrus Sinensis ID: 039441

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
MRELTGSSSSSVGIREREEERHREQRERDWEREREQFEDINIVPQDPEEEYKQCKQLCEKQEAVQRRCERHYKEQQGGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQKGQRRREKEGKFNPSSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSILDIAGVF
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccEEEEcccEEEEEEccccEEEEEEccccccccccccccEEEEEEEEccccccccccccccEEEEEEEccEEEEEEEccccEEEEEccccEEEEccccEEEEEccccccEEEEEEEEcccccccccccccccccccEEccHHHHHHHccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEccccccccccccccEEEEEEEEcEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEccccEEEEcccccEEEEEcccccEEEEEEEEcccccccccccccHHHHHcccHHHHHHHccccHHHHHHHHHccccEEEEEcccHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHccccccccHHHHHcHHHHHHHccccHccHEccccccccccccccccccHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEccEEEEEEEccEEEEEEcccccccHHHcccccEEEEEEEEcccEEEEEEEEccEEEEEEEEcEEEEEEEEccEEEEEEEEcccEEEEccccEEEEEEccccccEEEEEEEEcccccccEEEccccccEEEEccHHHHHHHHHHccccccccccccccEEcccccccEEcccEEEEEEcccccHHHHcccEEEEEEEEccccEEEEEEEcccEEEEEEEEccEEEEEEEccccccccccccccccccEEcccccEEEEEEEEEccccEEEEcccccEEEEEcccccEEEEEEEEccccccEEEcccccHHHHHccHHHHHHHccccHHHHHHHHHcccccEEEEcccccHcccccccccccHHHHHHHHccc
Coil and Loop (DISEMBL)
mreltgsssssvgirereEERHREQRERDWEREREqfedinivpqdpeeEYKQCKQLCEKQEAVQRRCERHYKeqqgggrrdyvvdddeeedegnnhhrdpkwqheQCLKQCerresgeqQQQQCKSWCEKHRQKGqrrrekegkfnpssnwqgseeeeennpyyfhsqrfryrvrsdsghmrvlQRFSqkshllrgIDNYRLAILeanpstlvvphhsdAETILVLLKGKGVITLVSHERresfnmehgdvisvpagttyylsnqdnvDRLHVAKllqpvntpgqfrvQQRQQGTIKRASQEQLKALSHHassrrrhgrgstapfnllsrkpiynnnfgrffeatpkdyqQLQEIDAGVTYVEinqggmmvphynskaTTIVLVVEGrgrfemggplssrwsqeSQREQQEEEEEEESSRELQKISanlspgvvfiippghpialvaspneklLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERvfgtnpkesyfvagpeeqqqrdeagsgkslpsILDIAGVF
Flexible Loop (DISEMBL)
mreltgsssssvgirereeerhreqrerdwerereqfedinivpqdpeEEYKQCKQLCEKQEAVQRRCErhykeqqgggrrdyvVDDDEEEDegnnhhrdpkwqHEQCLKQCERRESGEQQQQQCKSWCEKHrqkgqrrrekegkfnpssnwqgseeeeennpYYFHSQRFRYRVRSDSGHMRVlqrfsqkshllRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHErresfnmehgdvisVPAGTTYYLSNQDNVDRLHVAKLLqpvntpgqfrVQQRQQGTIKRASQEQLKALShhassrrrhgrgstapfnllsrkpiYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEmggplssrwsqeSQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPeeqqqrdeagsgkslpsildiagvf
Low Complexity Region (SEG)
MRELTGSSSSSVGIrereeerhreqrerdwerereQFEDINIVPQDPEEEYKQCKQLCEKQEAVQRRCERHYKEQQGGGRRDYVVdddeeedeGNNHHRDPKWQHEQCLKQCERRESGEqqqqqCKSWCEKHRQKGQRRREKEGKFNPSSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALshhassrrrhgrgsTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLssrwsqesqreqqeeeeeeessreLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSILDIAGVF
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************************YYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ**********************************************FNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRF*************************************LSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYF*****************************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************RFR*R*RSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG**********************************************KPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGG*******************************ANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPA*L************************************LDIAGVF
Disordered Region (DISEMBL)
*********************************REQFEDINIVPQDPEEEYKQCKQLCEKQ********************DYVVD******************HEQCLKQC*************************************************NPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQF**********************************STAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGG****************************KISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG**************SLPSILDIAGVF
Disordered Region (DISPRO)
************************************************EEYK*CKQLCEKQEAVQRRCERHYKEQQ***************************QHEQCLKQCE****GEQQQQQCKSWCEKHRQ**************************NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHAS*********TAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLS*******************SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGP***************P***DIAGVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRELTGSSSSSVGIREREEERHREQRERDWEREREQFEDINIVPQDPEEEYKQCKQLCEKQEAVQRRCERHYKEQQGGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQKGQRRREKEGKFNPSSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQRxxxxxxxxxxxxxxxxxxxxxLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSILDIAGVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	539	2.2.26 [Sep-21-2011]
P09799	605	Vicilin GC72-A OS=Gossypi	N/A	no	0.905	0.806	0.388	7e-99
Q9SPL5	666	Vicilin-like antimicrobia	N/A	no	0.903	0.731	0.356	1e-95
Q9SPL4	666	Vicilin-like antimicrobia	N/A	no	0.901	0.729	0.350	8e-92
Q9SPL3	625	Vicilin-like antimicrobia	N/A	no	0.899	0.776	0.351	9e-89
P09801	588	Vicilin C72 OS=Gossypium	N/A	no	0.838	0.768	0.362	5e-81
Q43358	525	Vicilin OS=Theobroma caca	N/A	no	0.677	0.695	0.392	8e-78
P13915	571	Convicilin OS=Pisum sativ	N/A	no	0.669	0.632	0.383	3e-73
P25974	439	Beta-conglycinin, beta ch	no	no	0.673	0.826	0.368	5e-65
P13916	605	Beta-conglycinin, alpha c	no	no	0.666	0.593	0.346	7e-65
P08438	463	Vicilin OS=Vicia faba PE=	N/A	no	0.693	0.807	0.362	1e-63

>sp|P09799|VCLA_GOSHI Vicilin GC72-A OS=Gossypium hirsutum PE=3 SV=1

 Score =  361 bits (927), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 225/579 (38%), Positives = 331/579 (57%), Gaps = 91/579 (15%)

Query: 16  EREEERHREQRERDWEREREQFEDINIVPQDPEEEYKQCKQLCEKQEAVQR-RCERHYKE 74
           +R E + +E+++RD E              DP+  Y+ C+Q C+++E   R  CE+  +E
Sbjct: 63  DRSETQLKEEQQRDGE--------------DPQRRYQDCRQHCQQEERRLRPHCEQSCRE 108

Query: 75  QQGGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQ 134
           Q                       + P  Q ++C ++C+ +E   +++QQC   C +  Q
Sbjct: 109 QYE-----------------KQQQQQPDKQFKECQQRCQWQEQRPERKQQCVKECREQYQ 151

Query: 135 ----KGQRRREKEGKFNPSSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQ 190
               KG+R  +   +          E+++ NNPYYFH + F+ R R + G+ RVLQRF+ 
Sbjct: 152 EDPWKGERENKWREE--EEEESDEGEQQQRNNPYYFHRRSFQERFREEHGNFRVLQRFAD 209

Query: 191 KSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHG 250
           K HLLRGI+ +R+AILEANP+T V+PHH DAE I V+  G+G +T V+HE +ES+N+  G
Sbjct: 210 KHHLLRGINEFRIAILEANPNTFVLPHHCDAEKIYVVTNGRGTVTFVTHENKESYNVVPG 269

Query: 251 DVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRV--------------------- 289
            V+ +PAG+T YL+NQDN ++L +A L +PVN PGQF+                      
Sbjct: 270 VVVRIPAGSTVYLANQDNREKLTIAVLHRPVNNPGQFQKFFPAGQENPQSYLRIFSREIL 329

Query: 290 ----------------------QQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTA-PF 326
                                 +Q+ QG  ++ASQEQ++ALS  A+S R  G+GS    F
Sbjct: 330 EAVFNTRSEQLDELPGGRQSHRRQQGQGMFRKASQEQIRALSQGATSPR--GKGSEGYAF 387

Query: 327 NLLSRKPIYNNNFGRFFEATPKDY-QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLV 385
           NLLS+ P Y+N  GRF+EA P+++ QQL+E+D+ V   EIN+G + VPHYNSKAT +VLV
Sbjct: 388 NLLSQTPRYSNQNGRFYEACPRNFQQQLREVDSSVVAFEINKGSIFVPHYNSKATFVVLV 447

Query: 386 VEGRGRFEMGGPLSSR----WSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG 441
            EG G  EM  P  SR    WS   + EQ+E+E E  S  + +++ A LS G +F++P G
Sbjct: 448 TEGNGHVEMVCPHLSRQSSDWSSREEEEQEEQEVERRSG-QYKRVRAQLSTGNLFVVPAG 506

Query: 442 HPIALVASPNEKLLTVGFSL-NARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERV 500
           HP+  VAS NE L  +GF L N ++N+R F+AGK N + Q +R+  E+AF V +RL++ V
Sbjct: 507 HPVTFVASQNEDLGLLGFGLYNGQDNKRIFVAGKTNNVRQWDRQAKELAFGVESRLVDEV 566

Query: 501 FGTNPKESYFVAGPEEQQQRDEAGSGKSLPSILDIAGVF 539
           F  NP+ESYFV+G + +   +  GS   L   LD A +F
Sbjct: 567 FNNNPQESYFVSGRDRRGFDERRGSNNPLSPFLDFARLF 605

Seed storage protein.
Gossypium hirsutum (taxid: 3635)

>sp|Q9SPL5|AMP21_MACIN Vicilin-like antimicrobial peptides 2-1 OS=Macadamia integrifolia GN=AMP2-1 PE=2 SV=1

 Score =  350 bits (899), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 316/552 (57%), Gaps = 65/552 (11%)

Query: 46  DPEEEYKQCKQLCEKQEA-------VQRRCERHYKEQQGGGRRDYVVDDDEEEDE----- 93
           DP+++Y+QC++ C+++E         Q+RCER Y++++   ++ Y     E+E++     
Sbjct: 121 DPQQQYEQCQKHCQRRETEPRHMQTCQQRCERRYEKEKRKQQKRYEEQQREDEEKYEERM 180

Query: 94  -GNNHHRDPKW-QHEQCLKQCERRESGEQQQQQCKSWC-EKHRQKGQRRREKEGKFNPSS 150
              ++ RDP+  ++E C ++CE++E   +QQ QC+  C E+ RQ G+       +   S 
Sbjct: 181 KEEDNKRDPQQREYEDCRRRCEQQEP--RQQHQCQLRCREQQRQHGRGGDMMNPQRGGSG 238

Query: 151 NWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANP 210
            ++  EEE+ +NPYYF  +    R R++ GH+ VL+ F  +S LLR + NYRL +LEANP
Sbjct: 239 RYEEGEEEQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLEANP 298

Query: 211 STLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVD 270
           +  V+P H DA+ IL+++ G+G + ++ H+ RES+N+E GDVI +PAGTT+YL N+DN +
Sbjct: 299 NAFVLPTHLDADAILLVIGGRGALKMIHHDNRESYNLECGDVIRIPAGTTFYLINRDNNE 358

Query: 271 RLHVAKLLQPVNTPGQFR------------------------------------VQQRQQ 294
           RLH+AK LQ ++TPGQ++                                      Q+++
Sbjct: 359 RLHIAKFLQTISTPGQYKEFFPAGGQNPEPYLSTFSKEILEAALNTQTEKLRGVFGQQRE 418

Query: 295 GTIKRASQEQLKALSHHAS-SR----RRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKD 349
           G I RASQEQ++ L+   S SR    RR G  S  P+NL +++P+Y+N +G+ +E  P+D
Sbjct: 419 GVIIRASQEQIRELTRDDSESRHWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEVKPED 478

Query: 350 YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQRE 409
           Y+QLQ++D  V    + QG MM P +N+++T +V+V  G    EM  P  S         
Sbjct: 479 YRQLQDMDLSVFIANVTQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRGGG 538

Query: 410 QQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRN 469
           ++ EEEE+      +++ A LS     ++  GHP+  V+S NE LL   F +NA+NN  N
Sbjct: 539 KRHEEEED---VHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHEN 595

Query: 470 FLAGK-INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKS 528
           FLAG+  N++ Q+E + ME+AF  P + +E  F +   +S F  GP + QQ+    + + 
Sbjct: 596 FLAGRERNVLQQIEPQAMELAFAAPRKEVEESFNSQ-DQSIFFPGPRQHQQQSPRSTKQQ 654

Query: 529 LP--SILDIAGV 538
            P  SILD  G 
Sbjct: 655 QPLVSILDFVGF 666

Antimicrobial peptides 2b, 2c and 2d have antibacterial and antifungal activity against a range of species.

Macadamia integrifolia (taxid: 60698)

>sp|Q9SPL4|AMP22_MACIN Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1

 Score =  338 bits (866), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 194/553 (35%), Positives = 315/553 (56%), Gaps = 67/553 (12%)

Query: 46  DPEEEYKQCKQLCEKQEA-------VQRRCERHYKEQQGGGRRDYVVDDDEEEDE----- 93
           DP+++Y+QC++ C++ E         Q+RCER Y++++   ++ Y     E+E++     
Sbjct: 121 DPQQQYEQCQERCQRHETEPRHMQTCQQRCERRYEKEKRKQQKRYEEQQREDEEKYEERM 180

Query: 94  -GNNHHRDPKW-QHEQCLKQCERRESGEQ--QQQQCKSWCEKHRQKGQRRREKEGKFNPS 149
              ++ RDP+  ++E C ++CE++E  +Q   Q++C+    +H + G     + G    S
Sbjct: 181 KEEDNKRDPQQREYEDCRRRCEQQEPRQQYQCQRRCREQQRQHGRGGDLINPQRGG---S 237

Query: 150 SNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEAN 209
             ++  EE++ +NPYYF  +    R R++ GH+ VL+ F  +S LLR + NYRL +LEAN
Sbjct: 238 GRYEEGEEKQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLEAN 297

Query: 210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNV 269
           P+  V+P H DA+ IL++  G+G + ++  + RES+N+E GDVI +PAGTT+YL N+DN 
Sbjct: 298 PNAFVLPTHLDADAILLVTGGRGALKMIHRDNRESYNLECGDVIRIPAGTTFYLINRDNN 357

Query: 270 DRLHVAKLLQPVNTPGQFR------------------------------------VQQRQ 293
           +RLH+AK LQ ++TPGQ++                                    + Q++
Sbjct: 358 ERLHIAKFLQTISTPGQYKEFFPAGGQNPEPYLSTFSKEILEAALNTQAERLRGVLGQQR 417

Query: 294 QGTIKRASQEQLKALSHHAS-SRRRH----GRGSTAPFNLLSRKPIYNNNFGRFFEATPK 348
           +G I  ASQEQ++ L+   S SRR H    G  S  P+NL +++P+Y+N +G+ +E  P+
Sbjct: 418 EGVIISASQEQIRELTRDDSESRRWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEVKPE 477

Query: 349 DYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQR 408
           DY+QLQ++D  V    I QG MM P +N+++T +V+V  G    EM  P  S      + 
Sbjct: 478 DYRQLQDMDVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRRG 537

Query: 409 EQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQR 468
            ++ EEEE+      +++ A LS     ++P GHP+  V+S NE LL   F +NA+NN  
Sbjct: 538 GKRHEEEED---VHYEQVKARLSKREAIVVPVGHPVVFVSSGNENLLLFAFGINAQNNHE 594

Query: 469 NFLAGK-INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGK 527
           NFLAG+  N++ Q+E + ME+AF  P + +E +F +   ES F  GP + QQ+    + +
Sbjct: 595 NFLAGRERNVLQQIEPQAMELAFAAPRKEVEELFNSQ-DESIFFPGPRQHQQQSSRSTKQ 653

Query: 528 SLP--SILDIAGV 538
             P  SILD  G 
Sbjct: 654 QQPLVSILDFVGF 666

Antimicrobial peptides 2b, 2c and 2d have antibacterial and antifungal activity against a range of species.

Macadamia integrifolia (taxid: 60698)

>sp|Q9SPL3|AMP23_MACIN Vicilin-like antimicrobial peptides 2-3 (Fragment) OS=Macadamia integrifolia GN=AMP2-3 PE=1 SV=1

 Score =  328 bits (840), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 195/554 (35%), Positives = 311/554 (56%), Gaps = 69/554 (12%)

Query: 46  DPEEEYKQCKQLCEKQEA-------VQRRCERHYKEQQGGGRRDYVVDDDEEED------ 92
           DP+++Y+QC++ C+++E         Q+RCER Y++++   ++ Y     E+E+      
Sbjct: 80  DPQQQYEQCQKRCQRRETEPRHMQICQQRCERRYEKEKRKQQKRYEEQQREDEEKYEERM 139

Query: 93  -EGNNHHRDPKW-QHEQCLKQCERRESGEQ--QQQQCKSWCEKHRQKGQRRREKEGKFNP 148
            EG+N  RDP+  ++E C + CE++E   Q   Q++C+    +H + G     + G    
Sbjct: 140 KEGDNK-RDPQQREYEDCRRHCEQQEPRLQYQCQRRCQEQQRQHGRGGDLMNPQRGG--- 195

Query: 149 SSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEA 208
           S  ++  EE++ +NPYYF  +    R R++ GH+ VL+ F  +S LLR + NYRL +LEA
Sbjct: 196 SGRYEEGEEKQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLEA 255

Query: 209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268
           NP+  V+P H DA+ IL+++ G+G + ++  + RES+N+E GDVI +PAGTT+YL N+DN
Sbjct: 256 NPNAFVLPTHLDADAILLVIGGRGALKMIHRDNRESYNLECGDVIRIPAGTTFYLINRDN 315

Query: 269 VDRLHVAKLLQPVNTPGQFR------------------------------------VQQR 292
            +RLH+AK LQ ++TPGQ++                                    + Q+
Sbjct: 316 NERLHIAKFLQTISTPGQYKEFFPAGGQNPEPYLSTFSKEILEAALNTQTERLRGVLGQQ 375

Query: 293 QQGTIKRASQEQLKALSHHAS-SRRRH----GRGSTAPFNLLSRKPIYNNNFGRFFEATP 347
           ++G I RASQEQ++ L+   S SRR H    G  S  P+NL +++P+Y+N +G+ +E  P
Sbjct: 376 REGVIIRASQEQIRELTRDDSESRRWHIRRGGESSRGPYNLFNKRPLYSNKYGQAYEVKP 435

Query: 348 KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQ 407
           +DY+QLQ++D  V    I QG MM P +N+++T +V+V  G    EM  P     S    
Sbjct: 436 EDYRQLQDMDVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACP---HLSGRHG 492

Query: 408 REQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQ 467
                +  EEE     +++ A LS     ++  GHP+  V+S NE LL   F +NA+NN 
Sbjct: 493 GRGGGKRHEEEEEVHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNH 552

Query: 468 RNFLAGK-INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSG 526
            NFLAG+  N++ Q+E + ME+AF    + +E +F +   ES F  GP + QQ+    + 
Sbjct: 553 ENFLAGRERNVLQQIEPQAMELAFAASRKEVEELFNSQ-DESIFFPGPRQHQQQSPRSTK 611

Query: 527 KSLP--SILDIAGV 538
           +  P  SILD  G 
Sbjct: 612 QQQPLVSILDFVGF 625

Antimicrobial peptides 2b, 2c and 2d have antibacterial and antifungal activity against a range of species.

Macadamia integrifolia (taxid: 60698)

>sp|P09801|VCLB_GOSHI Vicilin C72 OS=Gossypium hirsutum PE=2 SV=1

 Score =  302 bits (773), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 203/560 (36%), Positives = 308/560 (55%), Gaps = 108/560 (19%)

Query: 46  DPEEEYKQCKQLCE---KQEAVQRRCERHYKEQQGGGRRDYVVDDDEEEDEGNNHH-RDP 101
           DP + Y+ C++ CE   + +  Q++CE   K Q G            E+D+   H   DP
Sbjct: 36  DPPKRYEDCRRRCEWDTRGQKEQQQCEESCKSQYG------------EKDQQQRHRPEDP 83

Query: 102 KWQHEQCLKQCERRESGEQQQQQCKSWCEKHR--------------------------QK 135
           + ++E+C ++C ++E  E+Q+ QC+  C K                            +K
Sbjct: 84  QRRYEECQQECRQQE--ERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERK 141

Query: 136 GQRRREKEGKF--NP----------SSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMR 183
            Q  RE   ++  NP              +  E+E+ +NP++FH + F+ R R + G+ R
Sbjct: 142 QQCVRECRERYQENPWRREREEEAEEEETEEGEQEQSHNPFHFHRRSFQSRFREEHGNFR 201

Query: 184 VLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE 243
           VLQRF+ +  +LRGI+ +RL+ILEANP+T V+PHH DAE I ++  G+G +T ++HE +E
Sbjct: 202 VLQRFASRHPILRGINEFRLSILEANPNTFVLPHHCDAEKIYLVTNGRGTLTFLTHENKE 261

Query: 244 SFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQF---------------- 287
           S+N+  G V+ VPAG+T YL+NQDN ++L +A L +PVN P QF                
Sbjct: 262 SYNVVPGVVVRVPAGSTVYLANQDNKEKLIIAVLHRPVNNPRQFEEFFPAGSQRPQSYLR 321

Query: 288 ---------------------------RVQQRQQGTIKRASQEQLKALSHHASSRRRHGR 320
                                        +Q+ QG  ++ASQEQ++ALS  A+S R    
Sbjct: 322 AFSREILEPAFNTRSEQLDELFGGRQSHRRQQGQGMFRKASQEQIRALSQEATSPREKS- 380

Query: 321 GSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKAT 380
           G    FNLL R P Y+N  GRF+EA P++++QL +I+  V+ +++NQG + VPHYNSKAT
Sbjct: 381 GERFAFNLLYRTPRYSNQNGRFYEACPREFRQLSDINVTVSALQLNQGSIFVPHYNSKAT 440

Query: 381 TIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSR---ELQKISANLSPGVVFI 437
            +VLV EG G  EM  P   R S   + E+Q++E+E+E  R   + +KI + LS G +F+
Sbjct: 441 FVVLVNEGNGYVEMVSPHLPRQSSFEEEEEQQQEQEQEEERRSGQYRKIRSQLSRGDIFV 500

Query: 438 IPPGHPIALVASPNEKLLTVGFSL-----NARNNQRNFLAGKINIMNQVERETMEVAFNV 492
           +P   P+  VAS N+ L   GF L     N  +NQR F+AGKIN + Q + +  E+AF V
Sbjct: 501 VPANFPVTFVASQNQNLRMTGFGLYNQNINPDHNQRIFVAGKINHVRQWDSQAKELAFGV 560

Query: 493 PARLIERVFGTNPKESYFVA 512
            +RL++ +F  NP+ESYFV+
Sbjct: 561 SSRLVDEIFNNNPQESYFVS 580

Seed storage protein.

Gossypium hirsutum (taxid: 3635)

>sp|Q43358|VCL_THECC Vicilin OS=Theobroma cacao GN=CSV PE=2 SV=1

 Score =  291 bits (746), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 172/438 (39%), Positives = 248/438 (56%), Gaps = 73/438 (16%)

Query: 107 QCLKQCERRESGEQQQQQCKSWCEKHRQKGQRRREKEGKFNPSSNWQGSEEEEENNPYYF 166
           +C +Q + +E GE +          H  K  R  E+EG             ++ NNPYYF
Sbjct: 108 KCWEQYKEQERGEHENY--------HNHKKNRSEEEEG-------------QQRNNPYYF 146

Query: 167 HSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETIL 225
             +R F+ R R + G+ ++LQRF++ S  L+GI++YRLA+ EANP+T ++PHH DAE I 
Sbjct: 147 PKRRSFQTRFRDEEGNFKILQRFAENSPPLKGINDYRLAMFEANPNTFILPHHCDAEAIY 206

Query: 226 VLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG 285
            +  GKG IT V+HE +ES+N++ G V+SVPAG+T Y+ +QDN ++L +A L  PVN+PG
Sbjct: 207 FVTNGKGTITFVTHENKESYNVQRGTVVSVPAGSTVYVVSQDNQEKLTIAVLALPVNSPG 266

Query: 286 QFRV--------------------------QQRQQ------------------GTIKRAS 301
           ++ +                           QR++                  G  ++A 
Sbjct: 267 KYELFFPAGNNKPESYYGAFSYEVLETVFNTQREKLEEILEEQRGQKRQQGQQGMFRKAK 326

Query: 302 QEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVT 361
            EQ++A+S  A+S R  G G     NLLS+ P+Y+N  GRFFEA P+D+ Q Q +D  V+
Sbjct: 327 PEQIRAISQQATSPRHRG-GERLAINLLSQSPVYSNQNGRFFEACPEDFSQFQNMDVAVS 385

Query: 362 YVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQE-----EEEE 416
             ++NQG + VPHYNSKAT +V V +G G  +M  P  SR SQ SQ  +Q+     EE E
Sbjct: 386 AFKLNQGAIFVPHYNSKATFVVFVTDGYGYAQMACPHLSRQSQGSQSGRQDRREQEEESE 445

Query: 417 EESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKIN 476
           EE+  E Q++ A LSPG VF+ P GH +   AS ++ L  V F LNA+NNQR FLAG+  
Sbjct: 446 EETFGEFQQVKAPLSPGDVFVAPAGHAVTFFASKDQPLNAVAFGLNAQNNQRIFLAGRPF 505

Query: 477 IMNQVERETMEVAFNVPA 494
            +N  ++ T  + F V A
Sbjct: 506 FLNH-KQNTNVIKFTVKA 522

Theobroma cacao (taxid: 3641)

>sp|P13915|CVCA_PEA Convicilin OS=Pisum sativum GN=CVCA PE=1 SV=1

 Score =  276 bits (706), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 164/428 (38%), Positives = 235/428 (54%), Gaps = 67/428 (15%)

Query: 162 NPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDA 221
           NP+ F S +F     +++GH+R LQRF ++S L   + NYRL    A P T+ +P H DA
Sbjct: 153 NPFLFKSNKFLTLFENENGHIRRLQRFDKRSDLFENLQNYRLVEYRAKPHTIFLPQHIDA 212

Query: 222 ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV 281
           + ILV+L GK ++T++S   R S+N+E GD I +PAGTT YL NQD+ + L V   + PV
Sbjct: 213 DLILVVLNGKAILTVLSPNDRNSYNLERGDTIKIPAGTTSYLVNQDDEEDLRVVDFVIPV 272

Query: 282 NTPGQFRV------------------------------------------------QQRQ 293
           N PG+F                                                  ++ Q
Sbjct: 273 NRPGKFEAFGLSENKNQYLRGFSKNILEASLNTKYETIEKVLLEEQEKKPQQLRDRKRTQ 332

Query: 294 QG----TIKRASQEQLKALSHHASSRRRHGRGST-APFNLLSRKPIYNNNFGRFFEATP- 347
           QG     I + S+EQ++ L   A S  +    S   PFNL S KP Y+N FG+ FE TP 
Sbjct: 333 QGEERDAIIKVSREQIEELRKLAKSSSKKSLPSEFEPFNLRSHKPEYSNKFGKLFEITPE 392

Query: 348 KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQ 407
           K Y QLQ++D  V+ VEIN+G +M+PHYNS+A  ++LV EG+G  E+ G          +
Sbjct: 393 KKYPQLQDLDILVSCVEINKGALMLPHYNSRAIVVLLVNEGKGNLELLG---------LK 443

Query: 408 REQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQ 467
            EQQE E+ +E + E+Q+  A LSPG V IIP GHP+A+ AS N  LL  GF +NA+NNQ
Sbjct: 444 NEQQEREDRKERNNEVQRYEARLSPGDVVIIPAGHPVAISASSNLNLL--GFGINAKNNQ 501

Query: 468 RNFLAGK-INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSG 526
           RNFL+G   N+++Q+E    E+ F   ++ + R+   N K+S+F +   EQ++ +     
Sbjct: 502 RNFLSGSDDNVISQIENPVKELTFPGSSQEVNRLI-KNQKQSHFASAEPEQKEEESQRKR 560

Query: 527 KSLPSILD 534
             L S+LD
Sbjct: 561 SPLSSVLD 568

Seed storage protein.

Pisum sativum (taxid: 3888)

>sp|P25974|GLCB_SOYBN Beta-conglycinin, beta chain OS=Glycine max GN=CG-4 PE=1 SV=1

 Score =  249 bits (635), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 155/421 (36%), Positives = 239/421 (56%), Gaps = 58/421 (13%)

Query: 158 EEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVP 216
           E+ENNP+YF S   F+    + +  +R+LQRF+++S  L  + +YR+   ++ P+T+++P
Sbjct: 28  EDENNPFYFRSSNSFQTLFENQNVRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLP 87

Query: 217 HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276
           HH+DA+ +L +L G+ ++TLV+++ R+S+N+  GD   +PAGTTYYL N  +   L + K
Sbjct: 88  HHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIK 147

Query: 277 LLQPVNTPGQF-----RVQQRQQ------------------------------------- 294
           L  PVN PG++        Q QQ                                     
Sbjct: 148 LAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQE 207

Query: 295 GTIKRASQEQLKALSHHA-SSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
           G I   S+EQ++ LS  A SS R+       PFNL SR PIY+NNFG+FFE TP+   QL
Sbjct: 208 GVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQL 267

Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEE 413
           +++D  ++ V+IN+G +++PH+NSKA  I+++ EG    E+ G           +EQQ++
Sbjct: 268 RDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVG----------IKEQQQK 317

Query: 414 EEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
           +++EE   E+Q+  A LS   VF+IP  +P  + A+ N   L   F +NA NNQRNFLAG
Sbjct: 318 QKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFL--AFGINAENNQRNFLAG 375

Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
            K N++ Q+ER+  E+AF   A+ +ER+     +ESYFV    +Q++    G     PSI
Sbjct: 376 EKDNVVRQIERQVQELAFPGSAQDVERLLKKQ-RESYFVDAQPQQKEEGSKGRKGPFPSI 434

Query: 533 L 533
           L
Sbjct: 435 L 435

Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.

Glycine max (taxid: 3847)

>sp|P13916|GLCA_SOYBN Beta-conglycinin, alpha chain OS=Glycine max PE=2 SV=2

 Score =  248 bits (634), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 238/421 (56%), Gaps = 62/421 (14%)

Query: 162 NPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDA 221
           NP+ F S RF    ++  G +RVLQRF+Q+S  L+ + +YR+    + P+TL++P+H+DA
Sbjct: 194 NPFLFGSNRFETLFKNQYGRIRVLQRFNQRSPQLQNLRDYRILEFNSKPNTLLLPNHADA 253

Query: 222 ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV 281
           + ++V+L G  +++LV+++ R+S+ ++ GD + VP+GTTYY+ N DN + L +  L  PV
Sbjct: 254 DYLIVILNGTAILSLVNNDDRDSYRLQSGDALRVPSGTTYYVVNPDNNENLRLITLAIPV 313

Query: 282 NTPGQFRV-----------------------------------------------QQRQQ 294
           N PG+F                                                 Q+ Q+
Sbjct: 314 NKPGRFESFFLSSTEAQQSYLQGFSRNILEASYDTKFEEINKVLFSREEGQQQGEQRLQE 373

Query: 295 GTIKRASQEQLKALSHHA-SSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
             I   S+EQ++ALS  A SS R+       PFNL SR PIY+N  G+FFE TP+   QL
Sbjct: 374 SVIVEISKEQIRALSKRAKSSSRKTISSEDKPFNLRSRDPIYSNKLGKFFEITPEKNPQL 433

Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEE 413
           +++D  ++ V++N+G +++PH+NSKA  I+++ EG    E+ G           +EQQ+E
Sbjct: 434 RDLDIFLSIVDMNEGALLLPHFNSKAIVILVINEGDANIELVG----------LKEQQQE 483

Query: 414 EEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
           +++EE   E++K  A LS   +F+IP G+P+ + A+ N     +G  +NA NNQRNFLAG
Sbjct: 484 QQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSNLNFFAIG--INAENNQRNFLAG 541

Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
            + N+++Q+  +  E+AF   A+ +E++   N +ESYFV    ++++    G    L SI
Sbjct: 542 SQDNVISQIPSQVQELAFPGSAQAVEKLL-KNQRESYFVDAQPKKKEEGNKGRKGPLSSI 600

Query: 533 L 533
           L
Sbjct: 601 L 601

Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.

Glycine max (taxid: 3847)

>sp|P08438|VCL_VICFA Vicilin OS=Vicia faba PE=2 SV=1

 Score =  244 bits (623), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 159/439 (36%), Positives = 244/439 (55%), Gaps = 65/439 (14%)

Query: 155 SEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLV 214
           S   +++NP+ F S RF+    +++GH+R+LQ+F Q S LL  + NYRL   ++ P T+ 
Sbjct: 27  SSRSDQDNPFVFESNRFQTLFENENGHIRLLQKFDQHSKLLENLQNYRLLEYKSKPHTIF 86

Query: 215 VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHV 274
           +P  +DA+ ILV+L GK ++T++    R SF++E GD I +PAGT  YL N+D+ + L V
Sbjct: 87  LPQQTDADFILVVLSGKAILTVLLPNDRNSFSLERGDTIKLPAGTIGYLVNRDDEEDLRV 146

Query: 275 AKLLQPVN---TPGQFRV------------------------------------------ 289
             L+ PVN    P  F +                                          
Sbjct: 147 LDLVIPVNRPGEPQSFLLSGNQNQPSILSGFSKNILEASFNTDYKEIEKVLLEEHGKEKY 206

Query: 290 ------QQRQQG----TIKRASQEQLKALSHHASSRRRHGRGSTA-PFNLLSRKPIYNNN 338
                  +RQ+G     I + S++Q++ L+ +A S  +    S + PFNL SR+PIY+N 
Sbjct: 207 HRRGLKDRRQRGQEENVIVKISRKQIEELNKNAKSSSKKSTSSESEPFNLRSREPIYSNK 266

Query: 339 FGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL 398
           FG+FFE TPK   QLQ+++  V YVEIN+G +++PHYNS+A  IV V EG+G FE+ G  
Sbjct: 267 FGKFFEITPKRNPQLQDLNIFVNYVEINEGSLLLPHYNSRAIVIVTVNEGKGDFELVG-- 324

Query: 399 SSRWSQESQREQQEEEEEEESS---RELQKISANLSPGVVFIIPPGHPIALVASPNEKLL 455
               +Q+  RE+ +EE+E+      +++Q   A LSPG V +IP G+P+A+ AS N  L 
Sbjct: 325 QRNENQQGLREEYDEEKEQGEEEIRKQVQNYKAKLSPGDVLVIPAGYPVAIKASSNLNL- 383

Query: 456 TVGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGP 514
            VGF +NA NNQR FLAG + N+++Q+ +   E+AF   A+ ++ +   N K+S+F    
Sbjct: 384 -VGFGINAENNQRYFLAGEEDNVISQIHKPVKELAFPGSAQEVDTLL-ENQKQSHFANAQ 441

Query: 515 EEQQQRDEAGSGKSLPSIL 533
             +++R        L SIL
Sbjct: 442 PRERERGSQEIKDHLYSIL 460

Seed storage protein.

Vicia faba (taxid: 3906)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
255552107	613	Vicilin GC72-A precursor, putative [Rici	0.892	0.784	0.436	1e-112
31321944	481	vicilin seed storage protein [Juglans ni	0.799	0.896	0.468	1e-108
157384606	784	7S vicilin [Carya illinoinensis]	0.810	0.557	0.468	1e-107
157384600	792	7S vicilin [Carya illinoinensis] gi|1573	0.810	0.551	0.468	1e-107
6580762	593	vicilin-like protein precursor [Juglans	0.799	0.726	0.470	1e-107
3808062	810	PV100 [Cucurbita maxima]	0.706	0.470	0.473	5e-99
137578	605	RecName: Full=Vicilin GC72-A; AltName: F	0.905	0.806	0.388	5e-97
346426312	537	seed storage protein vicilin A, partial	0.873	0.877	0.399	9e-96
166053040	569	vicilin [Solanum lycopersicum]	0.857	0.811	0.399	1e-95
346426314	537	seed storage protein vicilin A, partial	0.829	0.832	0.409	4e-95

>gi|255552107|ref|XP_002517098.1| Vicilin GC72-A precursor, putative [Ricinus communis] gi|223543733|gb|EEF45261.1| Vicilin GC72-A precursor, putative [Ricinus communis]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/552 (43%), Positives = 345/552 (62%), Gaps = 71/552 (12%)

Query: 44  PQDPEEEYKQCKQLCEKQEAVQR-------RCE------RHYKEQQGGGRRDYVVDDDEE 90
           P+ P  E ++C+Q C ++ A QR       RCE      R  ++++G  R+    + D E
Sbjct: 77  PKSPRWEIERCQQRCRREGADQRELQKCQQRCEEEPIKEREREQEKGQERQPREHELDRE 136

Query: 91  EDEGNNHHRDPKWQHEQCLKQCERRESGEQQQQQCKSWC----EKHRQKGQRRREKEGKF 146
           + +      DP+ Q+E+CL+ CER+E   +Q+QQCK  C    E+ +++ + R    G  
Sbjct: 137 KSD------DPRKQYERCLEICERQEG--RQKQQCKRRCYTQYEEQQKEWEEREHGGGGG 188

Query: 147 NPSSNWQGSE-EEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAI 205
           N  +  +  E E+ +NNPYYFH+QR R   ++D GH+RVL++FS+ S LLRGI+NYRL +
Sbjct: 189 NSETETRSREIEQHKNNPYYFHAQRLRSPFKTDEGHIRVLEKFSESSELLRGIENYRLLL 248

Query: 206 LEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN 265
           L+A P+T +VP+H DAE+++V+L GK  I+ V  E+R S+N+E GDVI +PAG T Y+SN
Sbjct: 249 LDAVPNTFIVPNHFDAESLVVVLNGKCTISYVLREKRVSYNLETGDVIKIPAGATVYMSN 308

Query: 266 QDNVDRLHVAKLLQPVNTPGQFR------------------------------------V 289
            DN + L +A L+QPVN PG+F                                      
Sbjct: 309 HDNNEMLRLATLIQPVNIPGEFSSFSAAGGGNLESFYTVFSNDVLEAALDTPRDQLDKLF 368

Query: 290 QQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKD 349
            Q++QG I +A Q+QLKALS   SS R+ G+   AP NL +++P+Y+N +G  +EA+P D
Sbjct: 369 GQQRQGVIVKAPQKQLKALSQRVSSTRQKGQ---APLNLRNQQPLYSNRYGNLWEASPND 425

Query: 350 YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQRE 409
           ++QLQ++D  V+Y EI +G +MVPHYNS+ TTI LV+EG GR EM  P  +   Q+  ++
Sbjct: 426 HKQLQDMDVSVSYAEIKRGSLMVPHYNSRTTTIGLVLEGSGRVEMACPHVASQKQKESQQ 485

Query: 410 QQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRN 469
           +QE +   E  R   KIS+NLSPG VFI+P GHP AL+AS NE LLT+ F +NA NN RN
Sbjct: 486 EQETKGGAEHYR---KISSNLSPGGVFIMPAGHPTALLASQNENLLTLWFGINASNNHRN 542

Query: 470 FLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGK- 527
           FLAG + N+MNQ+E E  E++FNVPA LIE++F  N KES+FVAGP++ Q++        
Sbjct: 543 FLAGQRDNVMNQIEIEAKELSFNVPAELIEKIF-RNQKESHFVAGPQQGQRQQREEGRGH 601

Query: 528 SLPSILDIAGVF 539
           S+PSILD  G F
Sbjct: 602 SIPSILDFPGFF 613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|31321944|gb|AAM54366.1| vicilin seed storage protein [Juglans nigra]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/480 (46%), Positives = 312/480 (65%), Gaps = 49/480 (10%)

Query: 100 DPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQKGQRRREKEGKFNPSSNWQGSEEEE 159
           DP+ Q+ +C ++C+ +E   ++Q+QC+  CE+   K Q+ RE+  + +P    +G EEE+
Sbjct: 6   DPQQQYHRCQRRCQIQEQSPERQRQCQQRCERQ-YKEQQGRERGPEASPRRESKGREEEQ 64

Query: 160 E-NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH 218
           + +NPYYFHSQ  R R  S+ G ++ L+RF++++ LLRGI+NYR+ IL+ANP+T ++PHH
Sbjct: 65  QRHNPYYFHSQSIRSRHESEEGEVKYLERFAERTELLRGIENYRVVILDANPNTFMLPHH 124

Query: 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278
            DAE+++V+ +G+  +TLVS E RESFN+E GDVI VPAG T Y+ NQD+ +RL + KLL
Sbjct: 125 KDAESVIVVTRGRATLTLVSQETRESFNLECGDVIRVPAGATEYVINQDSNERLEMVKLL 184

Query: 279 QPVNTPGQ---------------------------------------FRVQQRQQGTIKR 299
           QPVN PGQ                                       F  Q++++G I R
Sbjct: 185 QPVNNPGQVREYYAAGAKSPDQSYLRVFSNDILVAALNTPRDRLERFFDQQEQREGVIIR 244

Query: 300 ASQEQLKALSHHASS--RRRHGRGSTA-PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEI 356
           ASQE+L+ALS HA S  +R  GR S+  P +L S +P Y+N FG+FFEA P++++QLQE+
Sbjct: 245 ASQEKLRALSQHAMSAGQRPWGRRSSGGPISLKSERPSYSNQFGQFFEACPEEHRQLQEM 304

Query: 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEE 416
           D  V Y EI +G MMVPHYNSKAT +V VVEG GR+EM  P  S  S E Q   + E+EE
Sbjct: 305 DVLVNYAEIKRGAMMVPHYNSKATVVVYVVEGTGRYEMACPHVSSQSFEDQ--GRREQEE 362

Query: 417 EESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKIN 476
           EES+   QK++A L+ G +F+IP GHPIA+ AS NE L  +GF +N  NNQRNFLAG+ +
Sbjct: 363 EESTGRFQKVTARLARGDIFVIPAGHPIAITASQNENLRLLGFGINGENNQRNFLAGQNS 422

Query: 477 IMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSILDIA 536
           I+NQ+ERE  E++FN+P   IE +F +   ESYFV  P E+Q R   G    L SIL  A
Sbjct: 423 IINQLEREAKELSFNMPREEIEEIFESQ-MESYFV--PTERQSRRGQGRDHPLASILGFA 479

Source: Juglans nigra

Species: Juglans nigra

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157384606|gb|ABV49593.1| 7S vicilin [Carya illinoinensis]

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/482 (46%), Positives = 313/482 (64%), Gaps = 45/482 (9%)

Query: 100 DPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQKGQRRREKEGKFNPSSNWQGSEEEE 159
           DP+ Q+ +C ++C+ +E   ++Q+QC+  CE+  ++ Q R     + +P    +G EEE+
Sbjct: 306 DPQQQYHRCQRRCQTQEQSPERQRQCQQRCERQYKEQQGREWGPDQASPRRESRGREEEQ 365

Query: 160 E-NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH 218
           + +NPYYFHSQ  R R  S  G ++ L+RF++++ LLRGI+NYR+ ILEANP+T V+P+H
Sbjct: 366 QRHNPYYFHSQGLRSRHESGEGEVKYLERFTERTELLRGIENYRVVILEANPNTFVLPYH 425

Query: 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278
            DAE+++V+ +G+  +T VS ERRESFN+E+GDVI VPAG T Y+ NQD+ +RL + KLL
Sbjct: 426 KDAESVIVVTRGRATLTFVSQERRESFNLEYGDVIRVPAGATEYVINQDSNERLEMVKLL 485

Query: 279 QPVNTPGQFR--------------------------------------VQQRQQGTIKRA 300
           QPVN PGQFR                                       Q++++G I RA
Sbjct: 486 QPVNNPGQFREYYAAGAQSTESYLRVFSNDILVAALNTPRDRLERFFDQQEQREGVIIRA 545

Query: 301 SQEQLKALSHHASS--RRRHGRGST-APFNLLSRKPIYNNNFGRFFEATPKDYQQLQEID 357
           SQE+L+ALS HA S  +R  GR S+  P +L S++  Y+N FG+FFEA P++++QLQE+D
Sbjct: 546 SQEKLRALSQHAMSAGQRPWGRRSSGGPISLKSQRSSYSNQFGQFFEACPEEHRQLQEMD 605

Query: 358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEE 417
             V Y EI +G MMVPHYNSKAT +V VVEG GRFEM  P          + ++E+EEEE
Sbjct: 606 VLVNYAEIKRGAMMVPHYNSKATVVVYVVEGTGRFEMACPHDVSSQSYEYKGRREQEEEE 665

Query: 418 ESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINI 477
            S+ + QK++A L+ G +F+IP GHPIA+ AS NE L  VGF +N +NNQRNFLAG+ NI
Sbjct: 666 SSTGQFQKVTARLARGDIFVIPAGHPIAITASQNENLRLVGFGINGKNNQRNFLAGQNNI 725

Query: 478 MNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSILDIAG 537
           +NQ+ERE  E++FN+P   IE +F     ESYFV  P E+Q R   G    L SILD AG
Sbjct: 726 INQLEREAKELSFNMPREEIEEIFERQ-VESYFV--PMERQSRRGQGRDHPLASILDFAG 782

Query: 538 VF 539
            F
Sbjct: 783 FF 784

Source: Carya illinoinensis

Species: Carya illinoinensis

Genus: Carya

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157384600|gb|ABV49590.1| 7S vicilin [Carya illinoinensis] gi|157384602|gb|ABV49591.1| 7S vicilin [Carya illinoinensis] gi|157384604|gb|ABV49592.1| 7S vicilin [Carya illinoinensis]

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/482 (46%), Positives = 313/482 (64%), Gaps = 45/482 (9%)

Query: 100 DPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQKGQRRREKEGKFNPSSNWQGSEEEE 159
           DP+ Q+ +C ++C+ +E   ++Q+QC+  CE+  ++ Q R     + +P    +G EEE+
Sbjct: 314 DPQQQYHRCQRRCQTQEQSPERQRQCQQRCERQYKEQQGREWGPDQASPRRESRGREEEQ 373

Query: 160 E-NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH 218
           + +NPYYFHSQ  R R  S  G ++ L+RF++++ LLRGI+NYR+ ILEANP+T V+P+H
Sbjct: 374 QRHNPYYFHSQGLRSRHESGEGEVKYLERFTERTELLRGIENYRVVILEANPNTFVLPYH 433

Query: 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278
            DAE+++V+ +G+  +T VS ERRESFN+E+GDVI VPAG T Y+ NQD+ +RL + KLL
Sbjct: 434 KDAESVIVVTRGRATLTFVSQERRESFNLEYGDVIRVPAGATEYVINQDSNERLEMVKLL 493

Query: 279 QPVNTPGQFR--------------------------------------VQQRQQGTIKRA 300
           QPVN PGQFR                                       Q++++G I RA
Sbjct: 494 QPVNNPGQFREYYAAGAQSTESYLRVFSNDILVAALNTPRDRLERFFDQQEQREGVIIRA 553

Query: 301 SQEQLKALSHHASS--RRRHGRGST-APFNLLSRKPIYNNNFGRFFEATPKDYQQLQEID 357
           SQE+L+ALS HA S  +R  GR S+  P +L S++  Y+N FG+FFEA P++++QLQE+D
Sbjct: 554 SQEKLRALSQHAMSAGQRPWGRRSSGGPISLKSQRSSYSNQFGQFFEACPEEHRQLQEMD 613

Query: 358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEE 417
             V Y EI +G MMVPHYNSKAT +V VVEG GRFEM  P          + ++E+EEEE
Sbjct: 614 VLVNYAEIKRGAMMVPHYNSKATVVVYVVEGTGRFEMACPHDVSSQSYEYKGRREQEEEE 673

Query: 418 ESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINI 477
            S+ + QK++A L+ G +F+IP GHPIA+ AS NE L  VGF +N +NNQRNFLAG+ NI
Sbjct: 674 SSTGQFQKVTARLARGDIFVIPAGHPIAITASQNENLRLVGFGINGKNNQRNFLAGQNNI 733

Query: 478 MNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSILDIAG 537
           +NQ+ERE  E++FN+P   IE +F     ESYFV  P E+Q R   G    L SILD AG
Sbjct: 734 INQLEREAKELSFNMPREEIEEIFERQ-VESYFV--PMERQSRRGQGRDHPLASILDFAG 790

Query: 538 VF 539
            F
Sbjct: 791 FF 792

Source: Carya illinoinensis

Species: Carya illinoinensis

Genus: Carya

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6580762|gb|AAF18269.1|AF066055_1 vicilin-like protein precursor [Juglans regia]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/480 (47%), Positives = 313/480 (65%), Gaps = 49/480 (10%)

Query: 100 DPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQKGQRRREKEGKFNPSSNWQGSEEEE 159
           DP+ Q+ +C ++C+ +E   ++Q+QC+  CE+   K Q+ RE+  + +P    +G EEE+
Sbjct: 118 DPQQQYHRCQRRCQIQEQSPERQRQCQQRCERQ-YKEQQGRERGPEASPRRESRGREEEQ 176

Query: 160 E-NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH 218
           + +NPYYFHSQ  R R  S+ G ++ L+RF++++ LLRGI+NYR+ IL+ANP+T ++PHH
Sbjct: 177 QRHNPYYFHSQSIRSRHESEEGEVKYLERFTERTELLRGIENYRVVILDANPNTSMLPHH 236

Query: 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278
            DAE++ V+ +G+  +TLVS E RESFN+E GDVI VPAG T Y+ NQD+ +RL + KLL
Sbjct: 237 KDAESVAVVTRGRATLTLVSQETRESFNLECGDVIRVPAGATVYVINQDSNERLEMVKLL 296

Query: 279 QPVNTPGQFR---------------------------------------VQQRQQGTIKR 299
           QPVN PGQFR                                        Q++++G I R
Sbjct: 297 QPVNNPGQFREYYAAGAKSPDQSYLRVFSNDILVAALNTPRDRLERFFDQQEQREGVIIR 356

Query: 300 ASQEQLKALSHHASS--RRRHGRGSTA-PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEI 356
           ASQE+L+ALS HA S  +R  GR S+  P +L S  P Y+N FG+FFEA P++++QLQE+
Sbjct: 357 ASQEKLRALSQHAMSAGQRPWGRRSSGGPISLKSESPSYSNQFGQFFEACPEEHRQLQEM 416

Query: 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEE 416
           D  V Y EI +G MMVPHYNSKAT +V VVEG GR+EM  P  S  SQ  + + + E+EE
Sbjct: 417 DVLVNYAEIKRGAMMVPHYNSKATVVVYVVEGTGRYEMACPHVS--SQSYEGQGRREQEE 474

Query: 417 EESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKIN 476
           EES+   QK++A L+ G +F+IP GHPIA+ AS NE L  +GF +N  NNQR+FLAG+ N
Sbjct: 475 EESTGRFQKVTARLARGDIFVIPAGHPIAITASQNENLRLLGFDINGENNQRDFLAGQNN 534

Query: 477 IMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSILDIA 536
           I+NQ+ERE  E++FN+P   IE +F +   ESYFV  P E+Q R   G    L SILD A
Sbjct: 535 IINQLEREAKELSFNMPREEIEEIFESQ-MESYFV--PTERQSRRGQGRDHPLASILDFA 591

Source: Juglans regia

Species: Juglans regia

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3808062|dbj|BAA34056.1| PV100 [Cucurbita maxima]

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 205/433 (47%), Positives = 277/433 (63%), Gaps = 52/433 (12%)

Query: 155 SEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLV 214
           +E+E+ NNPYYF  QRF+ R RSD GH RVL+RFS++S LL+GI N RLA+LEA P T +
Sbjct: 382 TEQEQSNNPYYFQEQRFQSRYRSDEGHWRVLERFSERSELLKGIKNQRLALLEARPHTFI 441

Query: 215 VPHHSDAETILVLLKGKGVITLVSHERRE----SFNMEHGDVISVPAGTTYYLSNQDNVD 270
           VPHH DAE +L++++G+  IT V  E+RE    S+N+E GDV+++PAGTT YL+NQ+N D
Sbjct: 442 VPHHLDAECVLLVVRGRATITTVVQEKRETRKESYNVESGDVMTIPAGTTLYLANQENED 501

Query: 271 RLHVAKLLQPVNTPGQFR-----------------------------------VQQRQQ- 294
            L + KL+QPVN PG+F+                                    +QR++ 
Sbjct: 502 -LQIVKLVQPVNNPGEFKDYLSAGGESQAYYSVFSNDVLEAALNIPRDKLERIFKQRRER 560

Query: 295 -GTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
            G I RASQEQL+ALS  A+S R+  RG  AP  L S+ P+YNN +G+ FEA P ++ QL
Sbjct: 561 GGKIVRASQEQLRALSQRATSVRKGSRGVRAPIKLESQTPVYNNQYGQMFEACPDEFPQL 620

Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP--LSSRW-----SQES 406
           +  D   + V+I QGGMMVPH+NS+AT +V V EG G FEM  P   SS+W      +E 
Sbjct: 621 RRTDVATSVVDIKQGGMMVPHFNSRATWVVFVSEGAGSFEMACPHIQSSQWQRGRREEER 680

Query: 407 QREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNN 466
              ++EEEE EE S   ++++  LS G V +IP GHPIA++ASPNE L  VGF +NA NN
Sbjct: 681 HWRREEEEEREERSGRFERVAGRLSEGGVLVIPAGHPIAIMASPNENLRLVGFGINAENN 740

Query: 467 QRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSG 526
            RNFLAG+ NIMN+++RE  E+AFNV  +  + +F +  +ES+F  GPE  ++R    S 
Sbjct: 741 HRNFLAGRENIMNELDREAKELAFNVEGKQADEIFRSQ-RESFFTEGPEGGRRRSTERS- 798

Query: 527 KSLPSILDIAGVF 539
             L SIL +AG F
Sbjct: 799 -PLLSILKLAGYF 810

Source: Cucurbita maxima

Species: Cucurbita maxima

Genus: Cucurbita

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|137578|sp|P09799.1|VCLA_GOSHI RecName: Full=Vicilin GC72-A; AltName: Full=Alpha-globulin A; Flags: Precursor gi|167371|gb|AAA33069.1| vicilin precursor [Gossypium hirsutum] gi|207906|gb|AAA72623.1| alpha globulin A [synthetic construct] gi|226119|prf||1410330A vicilin gene A

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 225/579 (38%), Positives = 331/579 (57%), Gaps = 91/579 (15%)

Query: 16  EREEERHREQRERDWEREREQFEDINIVPQDPEEEYKQCKQLCEKQEAVQR-RCERHYKE 74
           +R E + +E+++RD E              DP+  Y+ C+Q C+++E   R  CE+  +E
Sbjct: 63  DRSETQLKEEQQRDGE--------------DPQRRYQDCRQHCQQEERRLRPHCEQSCRE 108

Query: 75  QQGGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQ 134
           Q                       + P  Q ++C ++C+ +E   +++QQC   C +  Q
Sbjct: 109 QY-----------------EKQQQQQPDKQFKECQQRCQWQEQRPERKQQCVKECREQYQ 151

Query: 135 ----KGQRRREKEGKFNPSSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQ 190
               KG+R  +   +          E+++ NNPYYFH + F+ R R + G+ RVLQRF+ 
Sbjct: 152 EDPWKGERENKWREE--EEEESDEGEQQQRNNPYYFHRRSFQERFREEHGNFRVLQRFAD 209

Query: 191 KSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHG 250
           K HLLRGI+ +R+AILEANP+T V+PHH DAE I V+  G+G +T V+HE +ES+N+  G
Sbjct: 210 KHHLLRGINEFRIAILEANPNTFVLPHHCDAEKIYVVTNGRGTVTFVTHENKESYNVVPG 269

Query: 251 DVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRV--------------------- 289
            V+ +PAG+T YL+NQDN ++L +A L +PVN PGQF+                      
Sbjct: 270 VVVRIPAGSTVYLANQDNREKLTIAVLHRPVNNPGQFQKFFPAGQENPQSYLRIFSREIL 329

Query: 290 ----------------------QQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTA-PF 326
                                 +Q+ QG  ++ASQEQ++ALS  A+S R  G+GS    F
Sbjct: 330 EAVFNTRSEQLDELPGGRQSHRRQQGQGMFRKASQEQIRALSQGATSPR--GKGSEGYAF 387

Query: 327 NLLSRKPIYNNNFGRFFEATPKDY-QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLV 385
           NLLS+ P Y+N  GRF+EA P+++ QQL+E+D+ V   EIN+G + VPHYNSKAT +VLV
Sbjct: 388 NLLSQTPRYSNQNGRFYEACPRNFQQQLREVDSSVVAFEINKGSIFVPHYNSKATFVVLV 447

Query: 386 VEGRGRFEMGGPLSSR----WSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG 441
            EG G  EM  P  SR    WS   + EQ+E+E E  S  + +++ A LS G +F++P G
Sbjct: 448 TEGNGHVEMVCPHLSRQSSDWSSREEEEQEEQEVERRSG-QYKRVRAQLSTGNLFVVPAG 506

Query: 442 HPIALVASPNEKLLTVGFSL-NARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERV 500
           HP+  VAS NE L  +GF L N ++N+R F+AGK N + Q +R+  E+AF V +RL++ V
Sbjct: 507 HPVTFVASQNEDLGLLGFGLYNGQDNKRIFVAGKTNNVRQWDRQAKELAFGVESRLVDEV 566

Query: 501 FGTNPKESYFVAGPEEQQQRDEAGSGKSLPSILDIAGVF 539
           F  NP+ESYFV+G + +   +  GS   L   LD A +F
Sbjct: 567 FNNNPQESYFVSGRDRRGFDERRGSNNPLSPFLDFARLF 605

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346426312|gb|AEO27683.1| seed storage protein vicilin A, partial [Gossypium arboreum]

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 220/551 (39%), Positives = 331/551 (60%), Gaps = 80/551 (14%)

Query: 18  EEERHREQRERDWEREREQFEDINIVPQDPEEEYKQCKQLCEKQEAVQR-RCERHYKEQQ 76
           E+++  ++ ER ++ E+++  D      DP+  Y+ C+Q C+++E   R +CE+  +EQ 
Sbjct: 2   EQDKCEDRCERQFKEEQQRDGD------DPQRRYQDCRQHCQQEERRLRPQCEQSCQEQ- 54

Query: 77  GGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQK- 135
                                 + P  + ++C  +C+R+E G +++QQC   C +  Q+ 
Sbjct: 55  ----------------YERQQQQQPDKRFKECQHRCQRQEQGPERKQQCVKECREQYQED 98

Query: 136 -GQRRREKEGKFNPSSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHL 194
            G+  RE + +          E+++ NNPYYFH + F+ R R + G+ RVLQRF+ K HL
Sbjct: 99  PGKGERENKWREEEEEESDEGEQQQRNNPYYFHRRSFQERFREEHGNFRVLQRFADKHHL 158

Query: 195 LRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVIS 254
           LRGI+ +R+AILEANP+T V+PHH DAE I V+  G+G IT V+HE +ES+N+  G V+ 
Sbjct: 159 LRGINEFRIAILEANPNTFVLPHHCDAEKIYVVTNGRGTITFVTHENKESYNVAPGVVVR 218

Query: 255 VPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRV------------------------- 289
           +PAG+T YL+NQDN ++L +A L +PVN PGQF+                          
Sbjct: 219 IPAGSTVYLANQDNREKLTIAVLHRPVNNPGQFQKFFPAGQENPQSYLRIFSREILEAVF 278

Query: 290 ------------------QQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTA-PFNLLS 330
                             +Q+ QG  ++ASQEQ++ALS  A+S R  G+GS    FNLLS
Sbjct: 279 NTRSEQLDELFGGRQSHRRQQGQGMFRKASQEQIRALSQEATSPR--GKGSEGYAFNLLS 336

Query: 331 RKPIYNNNFGRFFEATPKDY-QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
           + P Y+N  GRF+EA P+++ QQLQE+D+ V   EIN+G + VPHYNSKAT +VLV +G 
Sbjct: 337 QTPRYSNQNGRFYEACPRNFQQQLQEVDSSVVAFEINKGSIFVPHYNSKATFVVLVTDGN 396

Query: 390 GRFEMGGP----LSSRWS--QESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHP 443
           G  EM  P     SS WS  +E ++E+QEE+E+E  S + +++ A LS G +F++P GHP
Sbjct: 397 GHVEMVCPHLSRQSSHWSSREEEEQEEQEEQEDERRSGQYKRVRAQLSTGDIFVVPAGHP 456

Query: 444 IALVASPNEKLLTVGFSL-NARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFG 502
           +  VAS N+ L  +GF L N ++N+R F+AGK N + Q +R+  E+AF V +RL++ VF 
Sbjct: 457 VTFVASQNKNLGLLGFGLYNGQDNKRIFVAGKTNNVRQWDRQAKELAFGVESRLVDEVFN 516

Query: 503 TNPKESYFVAG 513
            NP+ESYFV+G
Sbjct: 517 NNPQESYFVSG 527

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166053040|emb|CAP69670.1| vicilin [Solanum lycopersicum]

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 207/518 (39%), Positives = 320/518 (61%), Gaps = 56/518 (10%)

Query: 45  QDPEEEYKQCKQLCEKQEAVQRR--CERHYKEQQGGGRRDYVVDDDEEEDEGNNHHRDPK 102
           QDP+E+ ++C+Q CE+Q+  Q++  C++  ++Q    ++     +  E+D GN   R P 
Sbjct: 34  QDPQEKLRECQQRCERQQPGQQKQLCKQRCEQQYRKEQQQQHGGETGEDDLGN---RGPD 90

Query: 103 WQHEQCLKQCERRESGEQQQQQCKSWCEKHRQKGQRRR-EKEGKFNPSSNWQGSEEEEEN 161
             +++ L++C+RR   EQQ Q+ +   ++ +Q+ QR + + +G+ NP    Q  ++E+ N
Sbjct: 91  KSYKR-LQECQRRCQSEQQGQRLQECQQRCQQEYQREKGQHQGETNP----QWEQQEKSN 145

Query: 162 NPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDA 221
           NPY F SQRFR R R+  G  R+L+RF+Q+S LL+GI+ YR+AILE  P + V+PHH D 
Sbjct: 146 NPYLFESQRFRSRFRASHGDFRILERFNQRSQLLKGIEKYRVAILELEPQSFVLPHHCDG 205

Query: 222 ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV 281
           E I V++KG+GVI +   + + SFN++ GDVI + AG+  YL N+DN ++L V  L + V
Sbjct: 206 EAIYVVVKGQGVINIAEQDNKNSFNLQKGDVIRLFAGSNVYLLNKDNNEKLFVYVLAKSV 265

Query: 282 NTPGQFR------------------------------------VQQRQQGTIKRASQEQL 305
           N PG  +                                      Q ++G I +AS+EQ+
Sbjct: 266 NAPGNLQEYFSAGGQNPESFYRAFSSDILESAFNNPRDKLERLFGQHKEGIIIKASEEQI 325

Query: 306 KALSHHASSRRRHGRGST-APFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVE 364
           +A+S HAS   +  RG T  PFNL+  +P++ + FG+FFEA P+ Y+QL+++DA V ++ 
Sbjct: 326 RAISEHASRSTQQTRGRTQGPFNLMKERPVFESRFGQFFEARPERYEQLRDLDAAVGFMN 385

Query: 365 INQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR-----WSQESQREQQEEEEEEES 419
           INQGGM++P+YN+K+T +V+V+EG  RFEM  P   R     WS+   REQ+ E+E+E+ 
Sbjct: 386 INQGGMVLPYYNTKSTKLVMVIEGNARFEMACPHLGRQSQSPWSRGQGREQEREQEQEQE 445

Query: 420 SREL--QKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINI 477
             ++  QKI  NL+ G V +IP GHPI  VA+ N  L  VGF ++A NN++NFLAGK NI
Sbjct: 446 EGDVHYQKIRGNLNVGDVLVIPAGHPITFVATGNSNLRIVGFGVDAENNKKNFLAGKQNI 505

Query: 478 MNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPE 515
              ++RE  E++F++P R +E +F     +SYFVAGPE
Sbjct: 506 WRNIDREAKELSFSMPGREVEEIF-QRQDQSYFVAGPE 542

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346426314|gb|AEO27684.1| seed storage protein vicilin A, partial [Gossypium hirsutum]

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 215/525 (40%), Positives = 313/525 (59%), Gaps = 78/525 (14%)

Query: 46  DPEEEYKQCKQLCEKQEAVQR-RCERHYKEQQGGGRRDYVVDDDEEEDEGNNHHRDPKWQ 104
           DP+  Y+ C+Q C+++E   R +CE+  +EQ                       + P  +
Sbjct: 24  DPQRRYQDCRQHCQQEERRLRPQCEQSCQEQ-----------------YERQQQQQPDKR 66

Query: 105 HEQCLKQCERRESGEQQQQQCKSWCEKHRQ----KGQRRREKEGKFNPSSNWQGSEEEEE 160
            ++C  +C+R+E G +++QQC   C +  Q    KG+R  +   +          E+++ 
Sbjct: 67  FKECQHRCQRQEQGPERKQQCVKECREQYQEDPWKGERENKWREE--EEEESDEGEQQQR 124

Query: 161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD 220
           NNPYYFH + F+ R R + G+ RVLQRF+ K HLLRGI+ +R+AILEANP+T V+PHH D
Sbjct: 125 NNPYYFHRRSFQERFREEHGNFRVLQRFAAKHHLLRGINEFRIAILEANPNTFVLPHHCD 184

Query: 221 AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP 280
           AE I V+  G+G IT V+HE +ES+N+  G V+ +PAG+T YL+NQDN ++L +A L +P
Sbjct: 185 AEKIYVVTNGRGTITFVTHENKESYNVAPGVVVRIPAGSTVYLANQDNREKLTIAVLHRP 244

Query: 281 VNTPGQFRV-------------------------------------------QQRQQGTI 297
           VN PGQF+                                            +Q+ QG  
Sbjct: 245 VNNPGQFQKFFPSGQENPQSYLRIFSREILEAVFNTRSEQLDELFGGRQSHRRQQGQGMF 304

Query: 298 KRASQEQLKALSHHASSRRRHGRGSTA-PFNLLSRKPIYNNNFGRFFEATPKDY-QQLQE 355
           ++ASQEQ++ALS  A+S R  G+GS    FNLLS+ P Y+N  GRF+EA P+++ QQLQE
Sbjct: 305 RKASQEQIRALSQEATSPR--GKGSEGYAFNLLSQTPRYSNQNGRFYEACPRNFQQQLQE 362

Query: 356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP----LSSRWSQESQREQQ 411
           +D+ V   EIN+G + VPHYNSKAT +VLV +G G  EM  P     SS WS   Q EQ+
Sbjct: 363 VDSSVVAFEINKGSIFVPHYNSKATFVVLVTDGNGHVEMVCPHLSRQSSHWSSREQEEQE 422

Query: 412 EEEEEEESSR--ELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSL-NARNNQR 468
           E+EE+E+  R  + +++ A LS G +F++P GHP+  VAS N+ L  +GF L N ++N+R
Sbjct: 423 EQEEQEDERRSGQYKRVRAQLSTGDIFVVPAGHPVTFVASQNKNLGLLGFGLYNGQDNKR 482

Query: 469 NFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
            F+AGK N + Q +R+  E+AF V +RL++ VF  NP+ESYFV+G
Sbjct: 483 IFVAGKTNNVRQWDRQAKELAFGVESRLVDEVFNNNPQESYFVSG 527

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
UNIPROTKB|Q9SPL5	666	AMP2-1 "Vicilin-like antimicro	0.448	0.363	0.374	4.4e-86
UNIPROTKB|Q9SPL4	666	AMP2-2 "Vicilin-like antimicro	0.448	0.363	0.366	1.2e-85
UNIPROTKB|Q9SPL3	625	AMP2-3 "Vicilin-like antimicro	0.447	0.385	0.373	1e-84
TAIR|locus:2094404	486	PAP85 [Arabidopsis thaliana (t	0.387	0.430	0.352	1.1e-62
TAIR|locus:2056568	511	AT2G28490 [Arabidopsis thalian	0.256	0.270	0.237	2.1e-16
TAIR|locus:2046273	707	AT2G18540 "AT2G18540" [Arabido	0.139	0.106	0.315	2.7e-16
TAIR|locus:2115390	522	AT4G36700 "AT4G36700" [Arabido	0.307	0.318	0.262	9.4e-16

UNIPROTKB|Q9SPL5 AMP2-1 "Vicilin-like antimicrobial peptides 2-1" [Macadamia integrifolia (taxid:60698)]

 Score = 498 (180.4 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
 Identities = 97/259 (37%), Positives = 162/259 (62%)

Query:    45 QDPEEEYKQCKQLCEKQEA-------VQRRCERHYKEQQGGGRRDYVVXXXXXXXX---- 93
             +DP+++Y+QC++ C+++E         Q+RCER Y++++   ++ Y              
Sbjct:   120 RDPQQQYEQCQKHCQRRETEPRHMQTCQQRCERRYEKEKRKQQKRYEEQQREDEEKYEER 179

Query:    94 --GNNHHRDPKW-QHEQCLKQCERRESGEXXXXXCKSWC-EKHRQKGQRRREKEGKFNPS 149
                 ++ RDP+  ++E C ++CE++E  +     C+  C E+ RQ G+       +   S
Sbjct:   180 MKEEDNKRDPQQREYEDCRRRCEQQEPRQQHQ--CQLRCREQQRQHGRGGDMMNPQRGGS 237

Query:   150 SNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEAN 209
               ++  EEE+ +NPYYF  +    R R++ GH+ VL+ F  +S LLR + NYRL +LEAN
Sbjct:   238 GRYEEGEEEQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLEAN 297

Query:   210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNV 269
             P+  V+P H DA+ IL+++ G+G + ++ H+ RES+N+E GDVI +PAGTT+YL N+DN 
Sbjct:   298 PNAFVLPTHLDADAILLVIGGRGALKMIHHDNRESYNLECGDVIRIPAGTTFYLINRDNN 357

Query:   270 DRLHVAKLLQPVNTPGQFR 288
             +RLH+AK LQ ++TPGQ++
Sbjct:   358 ERLHIAKFLQTISTPGQYK 376

GO:0050832 "defense response to fungus" evidence=ISS

UNIPROTKB|Q9SPL4 AMP2-2 "Vicilin-like antimicrobial peptides 2-2" [Macadamia integrifolia (taxid:60698)]

 Score = 482 (174.7 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
 Identities = 95/259 (36%), Positives = 159/259 (61%)

Query:    45 QDPEEEYKQCKQLCEKQEA-------VQRRCERHYKEQQGGGRRDYVVXXXXXXXX---- 93
             +DP+++Y+QC++ C++ E         Q+RCER Y++++   ++ Y              
Sbjct:   120 RDPQQQYEQCQERCQRHETEPRHMQTCQQRCERRYEKEKRKQQKRYEEQQREDEEKYEER 179

Query:    94 --GNNHHRDPKW-QHEQCLKQCERRESGEXXXXXCKSWC-EKHRQKGQRRREKEGKFNPS 149
                 ++ RDP+  ++E C ++CE++E  +     C+  C E+ RQ G+       +   S
Sbjct:   180 MKEEDNKRDPQQREYEDCRRRCEQQEPRQQYQ--CQRRCREQQRQHGRGGDLINPQRGGS 237

Query:   150 SNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEAN 209
               ++  EE++ +NPYYF  +    R R++ GH+ VL+ F  +S LLR + NYRL +LEAN
Sbjct:   238 GRYEEGEEKQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLEAN 297

Query:   210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNV 269
             P+  V+P H DA+ IL++  G+G + ++  + RES+N+E GDVI +PAGTT+YL N+DN 
Sbjct:   298 PNAFVLPTHLDADAILLVTGGRGALKMIHRDNRESYNLECGDVIRIPAGTTFYLINRDNN 357

Query:   270 DRLHVAKLLQPVNTPGQFR 288
             +RLH+AK LQ ++TPGQ++
Sbjct:   358 ERLHIAKFLQTISTPGQYK 376

GO:0050832 "defense response to fungus" evidence=ISS

UNIPROTKB|Q9SPL3 AMP2-3 "Vicilin-like antimicrobial peptides 2-3" [Macadamia integrifolia (taxid:60698)]

 Score = 486 (176.1 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
 Identities = 97/260 (37%), Positives = 160/260 (61%)

Query:    45 QDPEEEYKQCKQLCEKQEA-------VQRRCERHYKEQQGGGRRDYVVXXXXXXXX---- 93
             +DP+++Y+QC++ C+++E         Q+RCER Y++++   ++ Y              
Sbjct:    79 RDPQQQYEQCQKRCQRRETEPRHMQICQQRCERRYEKEKRKQQKRYEEQQREDEEKYEER 138

Query:    94 ---GNNHHRDPKW-QHEQCLKQCERRESGEXXXXXCKSWC-EKHRQKGQRRREKEGKFNP 148
                G+N  RDP+  ++E C + CE++E        C+  C E+ RQ G+       +   
Sbjct:   139 MKEGDNK-RDPQQREYEDCRRHCEQQEP--RLQYQCQRRCQEQQRQHGRGGDLMNPQRGG 195

Query:   149 SSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEA 208
             S  ++  EE++ +NPYYF  +    R R++ GH+ VL+ F  +S LLR + NYRL +LEA
Sbjct:   196 SGRYEEGEEKQSDNPYYFDERSLSTRFRTEEGHISVLENFYGRSKLLRALKNYRLVLLEA 255

Query:   209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268
             NP+  V+P H DA+ IL+++ G+G + ++  + RES+N+E GDVI +PAGTT+YL N+DN
Sbjct:   256 NPNAFVLPTHLDADAILLVIGGRGALKMIHRDNRESYNLECGDVIRIPAGTTFYLINRDN 315

Query:   269 VDRLHVAKLLQPVNTPGQFR 288
              +RLH+AK LQ ++TPGQ++
Sbjct:   316 NERLHIAKFLQTISTPGQYK 335

GO:0043245 "extraorganismal space" evidence=NAS

GO:0045735 "nutrient reservoir activity" evidence=NAS

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2094404 PAP85 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 75/213 (35%), Positives = 111/213 (52%)

Query:   325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
             PFNL +  PIY+N+FG F EA PK+Y QLQ++     +  + QG + +PH+NSK T +  
Sbjct:   277 PFNLFAIDPIYSNDFGHFHEAHPKNYNQLQDLHIAAAWANMTQGSLFLPHFNSKTTFVTF 336

Query:   385 VVEGRGRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPI 444
             V  G  RFEM  P                         + K+ + +  G VFI+P GHP 
Sbjct:   337 VENGCARFEMATPYKFQRGQQQWPGQGQEEEEDMSEN-VHKVVSRVCKGEVFIVPAGHPF 395

Query:   445 ALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTN 504
              ++ S ++  + VGF + A N++R FLAG+ N+++ +      V F V +++ E++F T+
Sbjct:   396 TIL-SQDQDFIAVGFGIYATNSKRTFLAGEENLLSNLNPAATRVTFGVGSKVAEKLF-TS 453

Query:   505 PKESYFVAGPEEQQQRDEAGSGKSLPSILDIAG 537
                SYF      QQQ  E     S  SILD AG
Sbjct:   454 QNYSYFAPTSRSQQQIPEKHK-PSFQSILDFAG 485

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009845 "seed germination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2056568 AT2G28490 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
 Identities = 34/143 (23%), Positives = 64/143 (44%)

Query:   144 GKFNPSSNWQGSEEEEENNPY-YFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYR 202
             G+      W G  E        +F  +  R  ++S+ G MRV+   S +  ++       
Sbjct:    63 GEGEGGGEWGGGGEGGGGGRRGWFMMRESRQVIKSEGGEMRVV--LSPRGRIIE--KPMH 118

Query:   203 LAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYY 262
             +  L   P TL VP + D+  ++ + +G+  + ++  +      ++ GD+  +PAG+ +Y
Sbjct:   119 IGFLTMEPKTLFVPQYLDSSLLIFIRQGEATLGVICKDEFGERKLKAGDIYWIPAGSVFY 178

Query:   263 LSNQDNVDRLHVAKLLQPVNTPG 285
             L N     RLHV   + P  + G
Sbjct:   179 LHNTGLGQRLHVICSIDPTQSLG 201

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2046273 AT2G18540 "AT2G18540" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
 Identities = 24/76 (31%), Positives = 45/76 (59%)

Query:   433 GVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNV 492
             G VF++P  HP+A ++  N   + +GFS +A+ N   FL G+ +++  ++R+ + V+FN+
Sbjct:   338 GDVFVVPKFHPMAQMSFENSSFVFMGFSTSAKTNHPQFLVGQSSVLKVLDRDVVAVSFNL 397

Query:   493 PARLIERVFGTNPKES 508
                 I+ +     KES
Sbjct:   398 SNETIKGLLKAQ-KES 412

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA

TAIR|locus:2115390 AT4G36700 "AT4G36700" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 9.4e-16, Sum P(2) = 9.4e-16
 Identities = 48/183 (26%), Positives = 88/183 (48%)

Query:   326 FNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLV 385
             FN+   +P + + +GR      KD + L+    GV+ V + QG MM PH+N  A  I +V
Sbjct:   265 FNVFESEPDFESPYGRTITINRKDLKVLKGSMVGVSMVNLTQGSMMGPHWNPWACEISIV 324

Query:   386 VEGRGRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIA 445
             ++G G   +                             + +   +  G +F +P  HP+A
Sbjct:   325 LKGAGMVRV----------------LRSSISSNTSSECKNVRFKVEEGDIFAVPRLHPMA 368

Query:   446 LVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNP 505
              ++  N+ L+ VGF+ +A+NN+  FLAG+ + +  ++R+ +  + NV +  I+ + G   
Sbjct:   369 QMSFNNDSLVFVGFTTSAKNNEPQFLAGEDSALRMLDRQVLAASLNVSSVTIDGLLGAQ- 427

Query:   506 KES 508
             KE+
Sbjct:   428 KEA 430

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	539
smart00835	146	smart00835, Cupin_1, Cupin	2e-39
pfam00190	139	pfam00190, Cupin_1, Cupin	8e-27
pfam00190	139	pfam00190, Cupin_1, Cupin	5e-13
smart00835	146	smart00835, Cupin_1, Cupin	4e-08

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score =  140 bits (354), Expect = 2e-39
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 24/170 (14%)

Query: 329 LSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEG 388
           L  +P ++N  GR  EA P ++  L  +      V +  GGM+ PHY+ +AT ++ VV G
Sbjct: 1   LEPRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRG 60

Query: 389 RGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA 448
            GR  +  P  ++                          A L  G VF++P GHP   V 
Sbjct: 61  EGRVGVVDPNGNK-----------------------VYDARLREGDVFVVPQGHPHFQVN 97

Query: 449 SPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIE 498
           S +E L  V F+ N   N+R FLAG+ +++  +  E +  AF V A  + 
Sbjct: 98  SGDENLEFVAFNTND-PNRRFFLAGRNSVLRGLPPEVLAAAFGVSAEEVR 146

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score =  105 bits (264), Expect = 8e-27
 Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 31/160 (19%)

Query: 326 FNLLSRKPIYNNNFGRFFEATPKDYQQLQEI-DAGVTYVEINQGGMMVPHYNSKATTIVL 384
           FNLL   P++N+  GR   A P +   L  +  + V    I  GG+++PHY+  AT I+ 
Sbjct: 1   FNLLEPSPVFNSEGGRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILY 60

Query: 385 VVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI 444
           V++GRGR     P                          +     L  G VF++P G   
Sbjct: 61  VLQGRGRVGFVVP----------------------GCGFRVFHQKLREGDVFVVPAGFAH 98

Query: 445 ALVASPNEKLLTVGFSLNARNNQ--------RNFLAGKIN 476
               S +  L  V F  N   NQ          FLAG   
Sbjct: 99  WQYNSGDPGLELVAFDTNNPANQLPREVLARAFFLAGNEA 138

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 10/123 (8%)

Query: 174 RVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPH-HSDAETILVLLKGKG 232
              S+ G +            L G+    +      P  L++PH H +A  IL +L+G+G
Sbjct: 9   VFNSEGGRLETA--NPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILYVLQGRG 66

Query: 233 VITLVSH---ERRESFNMEHGDVISVPAGTTYYLSNQ-DNVDRLHVAKLLQP---VNTPG 285
            +  V      R     +  GDV  VPAG  ++  N  D    L       P   +    
Sbjct: 67  RVGFVVPGCGFRVFHQKLREGDVFVVPAGFAHWQYNSGDPGLELVAFDTNNPANQLPREV 126

Query: 286 QFR 288
             R
Sbjct: 127 LAR 129

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 174 RVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPH-HSDAETILVLLKGKG 232
              ++ G +R           L G+     A +   P  ++ PH H  A  +L +++G+G
Sbjct: 6   DFSNEGGRLREA--DPTNFPALNGLG-ISAARVNLEPGGMLPPHYHPRATELLYVVRGEG 62

Query: 233 VITLVSHE--RRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275
            + +V     +     +  GDV  VP G  ++  N  + +   VA
Sbjct: 63  RVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVA 107

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	539
PLN00212	493	glutelin; Provisional	100.0
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	100.0
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.94
PLN00212	493	glutelin; Provisional	99.93
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.89
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.82
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.82
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.7
PF04702	147	Vicilin_N: Vicilin N terminal region; InterPro: IP	99.55
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.54
PRK11171	266	hypothetical protein; Provisional	99.54
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.4
PF04702	147	Vicilin_N: Vicilin N terminal region; InterPro: IP	99.39
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	99.05
PRK04190	191	glucose-6-phosphate isomerase; Provisional	99.05
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.0
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	98.93
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	98.92
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	98.9
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	98.79
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.73
COG1917	131	Uncharacterized conserved protein, contains double	98.69
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.69
COG1917	131	Uncharacterized conserved protein, contains double	98.67
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.59
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.48
COG3837	161	Uncharacterized conserved protein, contains double	98.47
COG3837	161	Uncharacterized conserved protein, contains double	98.43
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	98.41
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.39
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.35
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.31
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.26
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.25
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.25
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.19
COG3257	264	GlxB Uncharacterized protein, possibly involved in	98.16
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.15
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.14
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.1
PRK11171	266	hypothetical protein; Provisional	98.09
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.05
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.01
COG4297	163	Uncharacterized protein containing double-stranded	97.97
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.89
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	97.87
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.75
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.71
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	97.68
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	97.67
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	97.62
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	97.61
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.6
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	97.58
COG1791	181	Uncharacterized conserved protein, contains double	97.52
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	97.49
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.47
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.43
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.41
COG1791	181	Uncharacterized conserved protein, contains double	97.41
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.4
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.33
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	97.32
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.19
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	97.15
PRK15131	389	mannose-6-phosphate isomerase; Provisional	97.13
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.13
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	97.07
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.04
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	97.02
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	97.0
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	96.99
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	96.94
PRK13500	312	transcriptional activator RhaR; Provisional	96.94
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	96.9
PRK13501	290	transcriptional activator RhaR; Provisional	96.89
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	96.88
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	96.85
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	96.84
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	96.83
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.79
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	96.77
PRK13502	282	transcriptional activator RhaR; Provisional	96.75
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	96.59
PRK13500	312	transcriptional activator RhaR; Provisional	96.59
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	96.55
PRK13503	278	transcriptional activator RhaS; Provisional	96.5
PRK13501	290	transcriptional activator RhaR; Provisional	96.48
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	96.39
PRK13503	278	transcriptional activator RhaS; Provisional	96.36
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	96.21
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	96.13
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	96.09
PRK13502	282	transcriptional activator RhaR; Provisional	96.05
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	95.92
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	95.86
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	95.85
COG4297	163	Uncharacterized protein containing double-stranded	95.82
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	95.76
COG3450	116	Predicted enzyme of the cupin superfamily [General	95.72
PLN02658	435	homogentisate 1,2-dioxygenase	95.61
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	95.6
COG1741	276	Pirin-related protein [General function prediction	95.59
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	95.57
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	95.5
PLN02288	394	mannose-6-phosphate isomerase	95.39
KOG2107	179	consensus Uncharacterized conserved protein, conta	95.34
PF12852	186	Cupin_6: Cupin	94.97
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	94.89
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	94.76
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	94.56
COG3450	116	Predicted enzyme of the cupin superfamily [General	94.54
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	94.49
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	94.43
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	94.39
KOG2107	179	consensus Uncharacterized conserved protein, conta	93.79
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	93.08
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	93.0
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	92.94
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	91.91
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	91.83
COG3257	264	GlxB Uncharacterized protein, possibly involved in	91.64
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	91.62
PRK15131	389	mannose-6-phosphate isomerase; Provisional	90.97
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	90.77
PF12852	186	Cupin_6: Cupin	90.57
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	90.04
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	89.97
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	89.79
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	89.68
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	89.3
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	89.23
PLN02288	394	mannose-6-phosphate isomerase	89.22
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	88.46
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	88.22
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	87.78
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	87.53
COG2850	383	Uncharacterized conserved protein [Function unknow	87.49
PLN02658	435	homogentisate 1,2-dioxygenase	87.48
TIGR02466	201	conserved hypothetical protein. This family consis	87.46
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	86.96
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	86.9
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	86.05
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	85.79
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	84.91
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	84.27
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	83.78
KOG3706	629	consensus Uncharacterized conserved protein [Funct	83.55
KOG3706	629	consensus Uncharacterized conserved protein [Funct	82.53
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	81.86
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	81.5
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	81.25
PF14861	31	Antimicrobial21: Plant antimicrobial peptide	80.77
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	80.64
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	80.63

>PLN00212 glutelin; Provisional

Probab=100.00  E-value=1.2e-63  Score=537.01  Aligned_cols=309  Identities=23%  Similarity=0.390  Sum_probs=266.8

Q ss_pred             eeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceee-----
Q 039441          173 YRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESF-----  245 (539)
Q Consensus       173 ~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~-----  245 (539)
                      .+|+||||.|+   .||+++++|+  ||+.+|++|   +|+||+||||+||++++||++|+|++|+|.|||+++|     
T Consensus        56 ~ri~se~G~~E---~~~~~~~q~~caGv~~~R~~i---~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~  129 (493)
T PLN00212         56 RKVRSEAGVTE---YFDEKNEQFQCTGVFVIRRVI---EPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQ  129 (493)
T ss_pred             hhhcccCceee---ecCCCChhhcccceEEEEEEe---cCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcc
Confidence            58999999877   5999999999  999999999   9999999999999999999999999999999998875     


Q ss_pred             ---------------------ecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC-------Ccee--------
Q 039441          246 ---------------------NMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG-------QFRV--------  289 (539)
Q Consensus       246 ---------------------~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg-------~f~~--------  289 (539)
                                           +|++||||+||||++||+||+| +++|++|+++|+.|..+       .|.+        
T Consensus       130 ~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~G-d~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~  208 (493)
T PLN00212        130 QFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDG-DAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQ  208 (493)
T ss_pred             cccccccccccccccccccceEeccCCEEEECCCCeEEEEeCC-CCcEEEEEEEeccccccccCCCcceeeccCCCcccc
Confidence                                 8999999999999999999999 57899999999876321       2322        


Q ss_pred             ---------------------------------------cc-ccCccEEEcChhhhhhcCccccc---------------
Q 039441          290 ---------------------------------------QQ-RQQGTIKRASQEQLKALSHHASS---------------  314 (539)
Q Consensus       290 ---------------------------------------~~-q~~G~Ivrv~~eql~~l~~~~~~---------------  314 (539)
                                                             ++ +++|.||+|+.+ ++.+.|....               
T Consensus       209 ~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~~~-l~~~~P~~~~~~e~~~~~~~~~~~~  287 (493)
T PLN00212        209 QVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKNG-LQLLQPTLTQQQEQAQQQQQRLYQQ  287 (493)
T ss_pred             ccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEECCC-cccCCCchhhhhHHHHhhhhccccc
Confidence                                                   12 257999999765 6655552110               


Q ss_pred             ---c--C---CCCCCCCc-------ceecC--CCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecC
Q 039441          315 ---R--R---RHGRGSTA-------PFNLL--SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNS  377 (539)
Q Consensus       315 ---~--~---~~~~~~~~-------~fnl~--~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhp  377 (539)
                         .  .   ...++...       .+||.  +.+|+|++.+|+++++++.+||+|+.++|+|++++|+||||++|||||
T Consensus       288 ~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~  367 (493)
T PLN00212        288 VQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNV  367 (493)
T ss_pred             chhhhccccccCCCCccccccccccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecC
Confidence               0  0   00122222       34553  678999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEE
Q 039441          378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV  457 (539)
Q Consensus       378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v  457 (539)
                      ||++|+||++|+|+|+||++++.                       ++++.+|++|||||||+||+|++.|. +++|.|+
T Consensus       368 nA~eI~yV~rG~g~vqvV~~~g~-----------------------~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v  423 (493)
T PLN00212        368 NAHSVVYITQGRARVQVVSNNGK-----------------------TVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYI  423 (493)
T ss_pred             CCCEEEEEeecceEEEEEcCCCC-----------------------EEEEEEEcCCCEEEECCCCeEEEeec-CCceEEE
Confidence            99999999999999999999863                       58999999999999999999999997 6789999


Q ss_pred             EEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCCh
Q 039441          458 GFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPE  515 (539)
Q Consensus       458 ~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~  515 (539)
                      +|.+++ ++..++|||++|+|++||.+||++||+++.++|++|+.++.++ +|+.+|.
T Consensus       424 ~F~tna-~~~~s~laG~~Sv~~alp~eVla~Af~is~eea~~lk~n~~~e-~~~~~p~  479 (493)
T PLN00212        424 AFKTNA-NAMVSHIAGKNSIFRALPVDVIANAYRISREEARRLKNNRGDE-LGAFTPR  479 (493)
T ss_pred             EeecCC-CccccccccHHHHHHhCCHHHHHHHcCCCHHHHHHHHhcccCc-eeecCCC
Confidence            999999 7789999999999999999999999999999999999998776 5555553

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=100.00  E-value=1.6e-38  Score=334.48  Aligned_cols=299  Identities=15%  Similarity=0.173  Sum_probs=227.7

Q ss_pred             ceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc-
Q 039441          164 YYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR-  242 (539)
Q Consensus       164 y~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~-  242 (539)
                      |-|+..+-+  . ..+|.++.   -+  ...|+++..+-.+.|++.|++++.||||.+.+|+||++|++++++++.+++ 
T Consensus        38 ~~~~~~~~~--~-~~gG~~~~---~~--~~~lP~l~~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~  109 (367)
T TIGR03404        38 WSFSDSHNR--L-ENGGWARE---VT--VRDLPISTAIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN  109 (367)
T ss_pred             eeeccccCc--c-ccCceEEE---eC--hhhccCcccccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE
Confidence            666665522  2 37887775   22  233454444555566669999999999999999999999999999987544 


Q ss_pred             eeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCC--CCCCceecc----ccCccEE---EcChhhhhhcCccc-
Q 039441          243 ESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVN--TPGQFRVQQ----RQQGTIK---RASQEQLKALSHHA-  312 (539)
Q Consensus       243 ~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n--~pg~f~~~~----q~~G~Iv---rv~~eql~~l~~~~-  312 (539)
                      .++.|++||+|+||+|.+|+++|.+  +.++++.+|++.+  .++++.+..    .+..++.   .++.+.++.|+... 
T Consensus       110 ~~~~L~~GD~~~fP~g~~H~~~n~~--~~~~~l~vf~~~~f~~~~~~~~~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~  187 (367)
T TIGR03404       110 YIDDVGAGDLWYFPPGIPHSLQGLD--EGCEFLLVFDDGNFSEDGTFLVTDWLAHTPKDVLAKNFGVPESAFDNLPLKEL  187 (367)
T ss_pred             EEeEECCCCEEEECCCCeEEEEECC--CCeEEEEEeCCcccCCcceeeHHHHHHhCCHHHHHHHhCCCHHHHHhccccCc
Confidence            4568999999999999999999995  4577888888764  345444411    1222111   12222222222110 


Q ss_pred             -----------ccc----CCCCCCCCcceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecC
Q 039441          313 -----------SSR----RRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNS  377 (539)
Q Consensus       313 -----------~~~----~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhp  377 (539)
                                 .+.    +.+.....+.|++.+..| +...+|++..+++.+||+++.  ++++.++|.||+|+.||||+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~  264 (367)
T TIGR03404       188 YIFPGTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKP-KQVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHP  264 (367)
T ss_pred             eEEecCCCCccccccCcCCCCCCCccEEEEhhhCCc-eecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCc
Confidence                       000    112222345668888888 677899999999999999886  99999999999999999999


Q ss_pred             CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEE
Q 039441          378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV  457 (539)
Q Consensus       378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v  457 (539)
                      +++||.||++|+++++|+++++                        +..+..|++||+++||+|++|++.|+|+++++||
T Consensus       265 ~~~E~~yvl~G~~~~~v~d~~g------------------------~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL  320 (367)
T TIGR03404       265 NADEWQYFIQGQARMTVFAAGG------------------------NARTFDYQAGDVGYVPRNMGHYVENTGDETLVFL  320 (367)
T ss_pred             CCCeEEEEEEEEEEEEEEecCC------------------------cEEEEEECCCCEEEECCCCeEEEEECCCCCEEEE
Confidence            9999999999999999999876                        2345789999999999999999999999999999


Q ss_pred             EEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcC
Q 039441          458 GFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGT  503 (539)
Q Consensus       458 ~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~  503 (539)
                      +++.++.. ....|   ++||+.+|++||+++|+++.+.+++|++.
T Consensus       321 ~if~s~~~-~~i~l---~~~l~~~p~~vl~~~~~~~~~~~~~l~~~  362 (367)
T TIGR03404       321 EVFKADRF-ADVSL---NQWLALTPPQLVAAHLNLDDEVIDSLKKE  362 (367)
T ss_pred             EEECCCCC-ceeEH---HHHHhhCCHHHHHHHhCcCHHHHHhcccc
Confidence            98877633 33334   68999999999999999999999999865

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.94  E-value=3e-26  Score=211.32  Aligned_cols=139  Identities=35%  Similarity=0.560  Sum_probs=114.7

Q ss_pred             eecCCCCCcccCCCceEEEeCCccccccc-ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccch
Q 039441          326 FNLLSRKPIYNNNFGRFFEATPKDYQQLQ-EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQ  404 (539)
Q Consensus       326 fnl~~~~p~~sn~~G~i~~~~~~~fP~L~-~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~  404 (539)
                      |||.+..|.+++++|+++.+++.+||+|. ..++++.++.|+||||++|||| +|++|+||++|+|+++||+++++..  
T Consensus         1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~--   77 (144)
T PF00190_consen    1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQE--   77 (144)
T ss_dssp             EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSS--
T ss_pred             CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccc--
Confidence            79999999999999999999999999544 4466777788899999999999 9999999999999999999987310  


Q ss_pred             hhhhhhhHHHHHHhhhcceeeEEe--eeCCCcEEEeCCCCeEEEEcCC-CCcEEEEEEeecCCCCccccccccchhcccC
Q 039441          405 ESQREQQEEEEEEESSRELQKISA--NLSPGVVFIIPPGHPIALVASP-NEKLLTVGFSLNARNNQRNFLAGKINIMNQV  481 (539)
Q Consensus       405 ~~~~g~~~~~~~e~~~~~y~~~~~--~L~~GDV~vVPaG~~h~i~n~g-ne~l~~v~F~~na~n~~~~fLAG~~svL~~~  481 (539)
                                       +.+....  +|++||||+||+|++||++|++ ++.+.+++|.+++..+.             |
T Consensus        78 -----------------~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~-------------l  127 (144)
T PF00190_consen   78 -----------------EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ-------------L  127 (144)
T ss_dssp             -----------------EEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE-------------S
T ss_pred             -----------------cceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc-------------C
Confidence                             0023334  4999999999999999999998 56677778887762222             8


Q ss_pred             cHHHHHHHcCCCHHHH
Q 039441          482 ERETMEVAFNVPARLI  497 (539)
Q Consensus       482 p~evLa~AF~vs~e~v  497 (539)
                      |++|++++|+++.+++
T Consensus       128 ~~~v~~~~F~~~~~~~  143 (144)
T PF00190_consen  128 PPEVLAKAFFLSGEEV  143 (144)
T ss_dssp             SHHHHHHHEESSHHHH
T ss_pred             CcHHHHHhcCCCcCcC
Confidence            9999999999999875

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PLN00212 glutelin; Provisional

Probab=99.93  E-value=5.7e-26  Score=245.64  Aligned_cols=178  Identities=19%  Similarity=0.260  Sum_probs=140.5

Q ss_pred             cccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhh--hhh
Q 039441          334 IYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQR--EQQ  411 (539)
Q Consensus       334 ~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~--g~~  411 (539)
                      .+...+|.+..|| .+.+.|+|+|+++++++|+|+||++|||| +|++|+||++|+|.+++|.|+|+.-.+...+  +.+
T Consensus        57 ri~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~  134 (493)
T PLN00212         57 KVRSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTE  134 (493)
T ss_pred             hhcccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccc
Confidence            4567899877777 67899999999999999999999999998 9999999999999999999998861110000  000


Q ss_pred             HHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEe-ecCC------CCcccccccc----------
Q 039441          412 EEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFS-LNAR------NNQRNFLAGK----------  474 (539)
Q Consensus       412 ~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~-~na~------n~~~~fLAG~----------  474 (539)
                      .+++.....++++++ .+|++||||+||+|++||++|+||+++++|++. ++..      +...+||||+          
T Consensus       135 ~~~~~~~~~d~hqkv-~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~  213 (493)
T PLN00212        135 GQSQSQKFRDEHQKI-HQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGR  213 (493)
T ss_pred             ccccccccccccccc-eEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccc
Confidence            011122234566776 789999999999999999999999998887644 4331      2347899996          


Q ss_pred             -------chhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCC
Q 039441          475 -------INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGP  514 (539)
Q Consensus       475 -------~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p  514 (539)
                             .|||++|++++|+.||||+.+++++|+..+++.+.||...
T Consensus       214 ~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~  260 (493)
T PLN00212        214 SIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVK  260 (493)
T ss_pred             cccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEEC
Confidence                   3599999999999999999999999998776545777664

>smart00835 Cupin_1 Cupin

Probab=99.89  E-value=3e-22  Score=185.16  Aligned_cols=142  Identities=35%  Similarity=0.622  Sum_probs=130.3

Q ss_pred             CCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhh
Q 039441          332 KPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQ  411 (539)
Q Consensus       332 ~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~  411 (539)
                      .+.|++++|++..+++.++|.+++.++.+..++|.||++..||||+++.+++||++|++.+.+.+..+.           
T Consensus         4 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~-----------   72 (146)
T smart00835        4 RPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGN-----------   72 (146)
T ss_pred             cccccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCC-----------
Confidence            346899999999999999999999999999999999999999999999999999999999999987542           


Q ss_pred             HHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHcC
Q 039441          412 EEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFN  491 (539)
Q Consensus       412 ~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~  491 (539)
                                  .+....|++||+++||+|.+|++.|.+++++.+++|.+.+ .+.+++++|..+||.+|++++++.+|+
T Consensus        73 ------------~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (146)
T smart00835       73 ------------KVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTND-PNRRFFLAGRNSVLRGLPPEVLAAAFG  139 (146)
T ss_pred             ------------eEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEecCC-CCceeEeecccchhhcCCHHHHHHHhC
Confidence                        3567899999999999999999999999999999987765 677888999899999999999999999


Q ss_pred             CCHHHH
Q 039441          492 VPARLI  497 (539)
Q Consensus       492 vs~e~v  497 (539)
                      ++.+++
T Consensus       140 ~~~~~~  145 (146)
T smart00835      140 VSAEEV  145 (146)
T ss_pred             cChHHc
Confidence            999765

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.82  E-value=9.9e-20  Score=167.96  Aligned_cols=113  Identities=26%  Similarity=0.447  Sum_probs=91.6

Q ss_pred             eecCccceeEecCCceEEEeeccCccc-ccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc--
Q 039441          166 FHSQRFRYRVRSDSGHMRVLQRFSQKS-HLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR--  242 (539)
Q Consensus       166 f~~~~f~~~v~se~G~i~vl~~f~~~s-~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~--  242 (539)
                      |...+..+++++++|.++.   |+..+ |.+.++..+.+.++.|+|+++++|||++|++|+||++|+|++++|.+++.  
T Consensus         1 fn~~~~~~~~~~~~G~~~~---~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~   77 (144)
T PF00190_consen    1 FNLREPRPRVSNEGGRIRE---ADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQE   77 (144)
T ss_dssp             EETCSSSEEEEETTEEEEE---ESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSS
T ss_pred             CCCCCCCCcccCCCEEEEE---EChhhCcceecccceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccc
Confidence            4556677899999999997   66555 55667777888888889999999999999999999999999999999873  


Q ss_pred             ----eeee--cCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCC
Q 039441          243 ----ESFN--MEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVN  282 (539)
Q Consensus       243 ----~~~~--v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n  282 (539)
                          ...+  |++|||++||+|++|||+|+++ .+..++.+|++.+
T Consensus        78 ~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~-~~~~~~~~f~~~~  122 (144)
T PF00190_consen   78 EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGD-DEALVLIIFDTNN  122 (144)
T ss_dssp             EEEEEEEEEEEETTEEEEE-TT-EEEEEECSS-SSEEEEEEEEESS
T ss_pred             cceeeeceeeeecccceeeccceeEEEEcCCC-CCCEEEEEEECCC
Confidence                3445  9999999999999999999984 4455556665544

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.82  E-value=2.2e-19  Score=189.76  Aligned_cols=154  Identities=17%  Similarity=0.240  Sum_probs=124.7

Q ss_pred             cceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccc
Q 039441          324 APFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWS  403 (539)
Q Consensus       324 ~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s  403 (539)
                      .+|++..++.   ..+|++++++..+||+|+.  |++.+++|.|||++.|||| .+.||+||++|++++++++.++    
T Consensus        38 ~~~~~~~~~~---~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g----  107 (367)
T TIGR03404        38 WSFSDSHNRL---ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENG----  107 (367)
T ss_pred             eeeccccCcc---ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCC----
Confidence            4555544443   2599999999999999987  8999999999999999999 5779999999999999999865    


Q ss_pred             hhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccc-cccccchhcccCc
Q 039441          404 QESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRN-FLAGKINIMNQVE  482 (539)
Q Consensus       404 ~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~-fLAG~~svL~~~p  482 (539)
                                          +.+...|++||+++||+|.+|++.|. ++++.++.++..+..+... ++.  .++|+.+|
T Consensus       108 --------------------~~~~~~L~~GD~~~fP~g~~H~~~n~-~~~~~~l~vf~~~~f~~~~~~~~--~~~l~~~p  164 (367)
T TIGR03404       108 --------------------RNYIDDVGAGDLWYFPPGIPHSLQGL-DEGCEFLLVFDDGNFSEDGTFLV--TDWLAHTP  164 (367)
T ss_pred             --------------------cEEEeEECCCCEEEECCCCeEEEEEC-CCCeEEEEEeCCcccCCcceeeH--HHHHHhCC
Confidence                                46667899999999999999999998 4567777655443222222 222  56888899


Q ss_pred             HHHHHHHcCCCHHHHHHhhcCCCCceeEecC
Q 039441          483 RETMEVAFNVPARLIERVFGTNPKESYFVAG  513 (539)
Q Consensus       483 ~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~  513 (539)
                      .+||+++|+++.+++++|+..  +. +|+++
T Consensus       165 ~~Vla~~f~l~~~~~~~l~~~--~~-~~~~~  192 (367)
T TIGR03404       165 KDVLAKNFGVPESAFDNLPLK--EL-YIFPG  192 (367)
T ss_pred             HHHHHHHhCCCHHHHHhcccc--Cc-eEEec
Confidence            999999999999999999864  34 77755

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.70  E-value=1e-16  Score=155.64  Aligned_cols=145  Identities=19%  Similarity=0.214  Sum_probs=122.1

Q ss_pred             CCcceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCE--EEEEEeceEEEEEecCCC
Q 039441          322 STAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATT--IVLVVEGRGRFEMGGPLS  399 (539)
Q Consensus       322 ~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~e--i~yV~~G~g~v~vV~p~g  399 (539)
                      ....|.+....|..+  +|.+.......+|..     +.+.+.++||+|.+.||||+|++  |.||++|+|.+.+..++|
T Consensus        51 ~~~~yel~~~~~~~~--~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G  123 (209)
T COG2140          51 DDFVYELLESEPGER--GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEG  123 (209)
T ss_pred             CceEEEeeccccccc--CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCC
Confidence            556788888888777  999988888888875     56788999999999999999999  999999999999999987


Q ss_pred             CccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcc
Q 039441          400 SRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMN  479 (539)
Q Consensus       400 s~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~  479 (539)
                                              +..+..+++||+++||.++.|+++|+|+++|+|+.+.-++ ......   ...++.
T Consensus       124 ------------------------~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~-~~~~y~---~~~~~~  175 (209)
T COG2140         124 ------------------------EARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD-AGQDYD---LIAWLG  175 (209)
T ss_pred             ------------------------cEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCC-CCceee---eeehhc
Confidence                                    4677899999999999999999999999999999766554 222222   256888


Q ss_pred             cCcHHHHHHHcCCCHHHHHHhh
Q 039441          480 QVERETMEVAFNVPARLIERVF  501 (539)
Q Consensus       480 ~~p~evLa~AF~vs~e~v~kL~  501 (539)
                      +++.-+++..|+++...++.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~D~p~  197 (209)
T COG2140         176 GMPPVLVENGLNKNPKYVDVPR  197 (209)
T ss_pred             cCCceeeccccccCcccccCcc
Confidence            8999999999988876555543

>PF04702 Vicilin_N: Vicilin N terminal region; InterPro: IPR006792 This region is found in plant seed storage proteins, N-terminal to the Cupin domain (IPR006045 from INTERPRO)

Probab=99.55  E-value=3.2e-14  Score=129.56  Aligned_cols=82  Identities=41%  Similarity=0.864  Sum_probs=74.2

Q ss_pred             CCCChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCCCccccccCCccccccCCCCCCCchhhHHHHHHHhhhhcc
Q 039441           43 VPQDPEEEYKQCKQLCEKQ-----EAVQRRCERHYKEQQGGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCERRES  117 (539)
Q Consensus        43 ~~~dp~~~~~~c~~~c~~q-----~~c~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~c~~~c~~~~~  117 (539)
                      ++.||+++|++|+++|+.+     .+|.++|+++|++++                      ..|.++|..|+++|+.|.+
T Consensus        51 r~~dPqr~ye~Cqq~Cqrq~~r~~~~C~qrCe~qye~eq----------------------~~pqkqy~eCqr~Ce~QeQ  108 (147)
T PF04702_consen   51 REEDPQRRYEQCQQRCQRQEPRQQQQCQQRCEEQYEKEQ----------------------QQPQKQYEECQRRCEEQEQ  108 (147)
T ss_pred             CccCHHHHHHHHHHHHHHhchHHhHHHHHHHHHHHHHHH----------------------hhHHHHHHHHHHHHHHHhh
Confidence            3679999999999999998     399999999999976                      2299999999999999999


Q ss_pred             chHhHHHHHHHHHHHHhhhhhhhhccCCC
Q 039441          118 GEQQQQQCKSWCEKHRQKGQRRREKEGKF  146 (539)
Q Consensus       118 ~~~~~~~c~~~c~~~~~~~~~~~~~~~~~  146 (539)
                      +++.+.+|+++|+++|+++++++++.++.
T Consensus       109 ~~r~qqQCq~rC~eqy~E~~~r~e~e~~~  137 (147)
T PF04702_consen  109 GPRRQQQCQRRCEEQYQEQQGRGEGEEKW  137 (147)
T ss_pred             chHHHHHHHHHHHHHHHHhhccccccccc
Confidence            99999999999999999999888777654

In Macadamia integrifolia (Macadamia nut) (Q9SPL4 from SWISSPROT), this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro [].

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.54  E-value=2.2e-12  Score=130.84  Aligned_cols=193  Identities=16%  Similarity=0.194  Sum_probs=128.4

Q ss_pred             ceeeEEEeeeCCCeee-cccc-cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          199 DNYRLAILEANPSTLV-VPHH-SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~-lPh~-~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      +.+-+.++++.|++-. .|++ ....+++||++|+..|++    ...++.|++||.++||+|++|.+.|.+ +++++++.
T Consensus        56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~----~g~~~~L~~Gd~~y~pa~~~H~~~N~~-~~~a~~l~  130 (260)
T TIGR03214        56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA----EGETHELREGGYAYLPPGSKWTLANAQ-AEDARFFL  130 (260)
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEE
Confidence            5666777888998744 3443 345799999999999874    235789999999999999999999998 47777766


Q ss_pred             EeccCCC-CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCc-ccCCCce-EEEeCCcccccc
Q 039441          277 LLQPVNT-PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPI-YNNNFGR-FFEATPKDYQQL  353 (539)
Q Consensus       277 l~d~~n~-pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~-~sn~~G~-i~~~~~~~fP~L  353 (539)
                      +-..... +|-     ...-.|+.-                           ..+..+. +....|. ++.+-+.+   +
T Consensus       131 v~k~y~~~~g~-----~~~~~vvg~---------------------------~~dv~~~~~~g~~~~~~~~llp~~---~  175 (260)
T TIGR03214       131 YKKRYQPVEGL-----HAPELVVGN---------------------------EKDIEPEPYEGMDDVILTTLLPKE---L  175 (260)
T ss_pred             EEeeeEEcCCC-----CCCCeeecC---------------------------HHHCCccccCCCCcEEEEEeCchh---c
Confidence            5432100 000     000011100                           0000000 0111222 33333222   2


Q ss_pred             cccceeEEEEEEcCCceecc-eecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCC
Q 039441          354 QEIDAGVTYVEINQGGMMVP-HYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSP  432 (539)
Q Consensus       354 ~~l~isva~v~L~pGgm~~P-HwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~  432 (539)
                      .. ++.+..++|.||+-... |.|. -.+..||++|+|.+.+   ++                        +  ...|.+
T Consensus       176 ~~-~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~---~g------------------------~--~~~V~~  224 (260)
T TIGR03214       176 AF-DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNL---DN------------------------N--WVPVEA  224 (260)
T ss_pred             CC-CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEE---CC------------------------E--EEEecC
Confidence            22 68888899999999874 5554 5567799999998854   22                        1  257999


Q ss_pred             CcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          433 GVVFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       433 GDV~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      ||+++||+|.+|+++|+|+++|.+|-.++-
T Consensus       225 GD~i~i~~~~~h~~~~~G~~~~~~l~ykd~  254 (260)
T TIGR03214       225 GDYIWMGAYCPQACYAGGRGEFRYLLYKDM  254 (260)
T ss_pred             CCEEEECCCCCEEEEecCCCcEEEEEEccc
Confidence            999999999999999999999999975543

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=99.54  E-value=1.7e-12  Score=131.94  Aligned_cols=195  Identities=16%  Similarity=0.217  Sum_probs=132.7

Q ss_pred             ceeeEEEeeeCCCeeeccc-cc-CCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          199 DNYRLAILEANPSTLVVPH-HS-DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh-~~-dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      ..+-+.++++.|++-..++ |+ ...+++||++|++.+.+    ...++.|.+||.++||+|++|.+.|.+ ++.++++.
T Consensus        59 ~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~----~g~~~~L~~GDsi~~p~~~~H~~~N~g-~~~a~~l~  133 (266)
T PRK11171         59 ATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL----EGKTHALSEGGYAYLPPGSDWTLRNAG-AEDARFHW  133 (266)
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEE
Confidence            4455667777999865444 33 56899999999999986    235899999999999999999999998 57788877


Q ss_pred             EeccCCC-CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCce-EE--EeCCccccc
Q 039441          277 LLQPVNT-PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGR-FF--EATPKDYQQ  352 (539)
Q Consensus       277 l~d~~n~-pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~-i~--~~~~~~fP~  352 (539)
                      +...... ++.+    .+. .|+.-                        ...+ ...+. ...-|. +.  .+.+.+   
T Consensus       134 v~~~y~~~~~~~----~p~-~~~~~------------------------~~d~-~~~~~-~g~~g~~~~~~~~~p~~---  179 (266)
T PRK11171        134 IRKRYEPVEGHE----APE-AFVGN------------------------ESDI-EPIPM-PGTDGVWATTRLVDPED---  179 (266)
T ss_pred             EEcCCeEcCCCC----CCC-eEecc------------------------hhcc-ccccc-CCCCCeEEEEEeeCchh---
Confidence            6643211 0000    010 11100                        0000 00111 111222 22  222221   


Q ss_pred             ccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCC
Q 039441          353 LQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSP  432 (539)
Q Consensus       353 L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~  432 (539)
                       ...++.+..++|.||+-+..|-|....+.+||++|++.+.+ +  +                        +  ...|.+
T Consensus       180 -~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~-~--~------------------------~--~~~l~~  229 (266)
T PRK11171        180 -LRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL-N--N------------------------D--WVEVEA  229 (266)
T ss_pred             -cCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE-C--C------------------------E--EEEeCC
Confidence             13347889999999999988533377899999999999965 2  2                        1  257999


Q ss_pred             CcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          433 GVVFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       433 GDV~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      ||++.+|++.+|++.|.+++++.++.+++-
T Consensus       230 GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~  259 (266)
T PRK11171        230 GDFIWMRAYCPQACYAGGPGPFRYLLYKDV  259 (266)
T ss_pred             CCEEEECCCCCEEEECCCCCcEEEEEEccc
Confidence            999999999999999999999999987654

>smart00835 Cupin_1 Cupin

Probab=99.40  E-value=3.3e-12  Score=118.13  Aligned_cols=101  Identities=21%  Similarity=0.381  Sum_probs=83.1

Q ss_pred             eEecCCceEEEeeccCccc-ccccCcceeeEEEeeeCCCeeeccccc-CCCcEEEEEeceEEEEEEeCCC--ceeeecCC
Q 039441          174 RVRSDSGHMRVLQRFSQKS-HLLRGIDNYRLAILEANPSTLVVPHHS-DAETILVLLKGKGVITLVSHER--RESFNMEH  249 (539)
Q Consensus       174 ~v~se~G~i~vl~~f~~~s-~~l~gv~~~Rl~il~l~P~~l~lPh~~-dA~~~~yV~~G~g~i~~v~pg~--~~~~~v~~  249 (539)
                      .+++++|.+++   |+... +.|.+ .++.+.+++++|++...|||| ++++++||++|++++.+..+++  ..++.|++
T Consensus         6 ~~~~~~g~~~~---~~~~~~~~~~~-~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~   81 (146)
T smart00835        6 DFSNEGGRLRE---ADPTNFPALNG-LGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLRE   81 (146)
T ss_pred             cccCCCceEEE---eCchhCccccc-CceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecC
Confidence            47999999987   56544 55553 256677777799999999986 5899999999999999988754  45899999


Q ss_pred             CcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          250 GDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       250 GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      ||+++||+|++||+.|.+ +++++++. +..
T Consensus        82 GD~~~ip~g~~H~~~n~~-~~~~~~l~-~~~  110 (146)
T smart00835       82 GDVFVVPQGHPHFQVNSG-DENLEFVA-FNT  110 (146)
T ss_pred             CCEEEECCCCEEEEEcCC-CCCEEEEE-Eec
Confidence            999999999999999998 58898875 443

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PF04702 Vicilin_N: Vicilin N terminal region; InterPro: IPR006792 This region is found in plant seed storage proteins, N-terminal to the Cupin domain (IPR006045 from INTERPRO)

Probab=99.39  E-value=1.2e-12  Score=119.25  Aligned_cols=79  Identities=42%  Similarity=0.883  Sum_probs=69.0

Q ss_pred             CCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhCCCccccccCCccccccCCCCCCCchhhHHHHHHHhhh
Q 039441           42 IVPQDPEEEYKQCKQLCEKQ-------EAVQRRCERHYKEQQGGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCER  114 (539)
Q Consensus        42 ~~~~dp~~~~~~c~~~c~~q-------~~c~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~c~~~c~~  114 (539)
                      .+++||+.+|++|+++|..+       .+|++||++.|++++++.+.+               ..||.++|..|.+.|+.
T Consensus         4 ~~~~DPqq~y~qCq~rC~~q~~g~r~q~qC~~RCE~q~~E~q~~~r~r---------------~~dPqr~ye~Cqq~Cqr   68 (147)
T PF04702_consen    4 RNPRDPQQQYEQCQRRCQRQERGQRQQQQCQQRCEEQYEEEQRRQRGR---------------EEDPQRRYEQCQQRCQR   68 (147)
T ss_pred             ccccChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccCC---------------ccCHHHHHHHHHHHHHH
Confidence            35899999999999999988       399999999999888664211               36999999999999999


Q ss_pred             hccchHhHHHHHHHHHHHHhhhh
Q 039441          115 RESGEQQQQQCKSWCEKHRQKGQ  137 (539)
Q Consensus       115 ~~~~~~~~~~c~~~c~~~~~~~~  137 (539)
                      ++  ++..++|.++|...|++++
T Consensus        69 q~--~r~~~~C~qrCe~qye~eq   89 (147)
T PF04702_consen   69 QE--PRQQQQCQQRCEEQYEKEQ   89 (147)
T ss_pred             hc--hHHhHHHHHHHHHHHHHHH
Confidence            98  7899999999999998764

In Macadamia integrifolia (Macadamia nut) (Q9SPL4 from SWISSPROT), this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro [].

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=99.05  E-value=5e-09  Score=109.75  Aligned_cols=211  Identities=22%  Similarity=0.287  Sum_probs=128.7

Q ss_pred             EEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccC--
Q 039441          204 AILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV--  281 (539)
Q Consensus       204 ~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~--  281 (539)
                      .+-.|.|+....||-+.+..|.||++|+|..|+|+.   +.+.+++||+|++|++..|.-.|.+ ++.++.+.++|-.  
T Consensus        84 ~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~g---~~~~~~~gD~~~tP~w~wH~H~n~~-d~~~~wld~lD~Pl~  159 (335)
T TIGR02272        84 GLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVDG---ERTTMHPGDFIITPSWTWHDHGNPG-DEPMIWLDGLDIPLV  159 (335)
T ss_pred             hhEEeCCCCCCCccccccceEEEEEEcCceEEEECC---EEEeeeCCCEEEeCCCeeEecccCC-CCcEEEEecCCHHHH
Confidence            344468998999999999999999999998777753   4899999999999999999999997 4666655555521  


Q ss_pred             C-CCCCcee-c---cc----cCcc-EEEcChhhhhhcCccccccCCCCCCCCcceecC---------C--CCCcccCCCc
Q 039441          282 N-TPGQFRV-Q---QR----QQGT-IKRASQEQLKALSHHASSRRRHGRGSTAPFNLL---------S--RKPIYNNNFG  340 (539)
Q Consensus       282 n-~pg~f~~-~---~q----~~G~-Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~---------~--~~p~~sn~~G  340 (539)
                      . ....|.. .   .+    +.|. ..+-..    .|.|-. . ......++ .|+..         .  .......-.|
T Consensus       160 ~~l~~~f~e~~~~~~~~~~~~~~~~~~~~g~----~l~P~~-~-~~~~~~sP-~~~ypw~~~~~aL~~~~~~~~~~~~~g  232 (335)
T TIGR02272       160 QLFDCSFAEGYPEDQQPVTRPEGDSLARYGH----NMLPVR-H-KRSDRSSP-IFNYPYERSREALDDLTRTGEWDPWHG  232 (335)
T ss_pred             HhhCcceeccccccccccccCCcchhhhccc----Cccccc-c-ccCCCCCC-ceecCcHHHHHHHHHHHhccCCCCCce
Confidence            1 1122222 0   01    1110 000000    011100 0 00000010 12221         1  1111122234


Q ss_pred             e-EEEeCCcccc-cccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441          341 R-FFEATPKDYQ-QLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE  418 (539)
Q Consensus       341 ~-i~~~~~~~fP-~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~  418 (539)
                      . +..+++.+=+ .+..  |+.....|.+|....||=| .+..|.||++|+|++.|   ++                   
T Consensus       233 ~~l~y~NP~TG~~~~pt--i~~~~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g~-------------------  287 (335)
T TIGR02272       233 LKLRYVNPATGGYPMPT--IGAFIQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---GD-------------------  287 (335)
T ss_pred             EEEEEeCCCCCCCcchh--HHHHHhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---CC-------------------
Confidence            4 4555654443 3333  4555577888888888876 77899999999999988   22                   


Q ss_pred             hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEE
Q 039441          419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F  459 (539)
                           ++  +++++||+|+||..+.|...|.  ++..++.|
T Consensus       288 -----~~--~~W~~gD~f~vPsW~~~~h~a~--~da~Lf~~  319 (335)
T TIGR02272       288 -----AV--FRFSPKDVFVVPSWHPVRFEAS--DDAVLFSF  319 (335)
T ss_pred             -----EE--EEecCCCEEEECCCCcEecccC--CCeEEEEe
Confidence                 23  5899999999999988877775  34544444

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=99.05  E-value=2.4e-09  Score=104.08  Aligned_cols=96  Identities=20%  Similarity=0.276  Sum_probs=78.3

Q ss_pred             EEEeCCcccccccccceeEEEEEEcCCce------ecceecCCCC--EEEEEEeceEEEEEecCCCCccchhhhhhhhHH
Q 039441          342 FFEATPKDYQQLQEIDAGVTYVEINQGGM------MVPHYNSKAT--TIVLVVEGRGRFEMGGPLSSRWSQESQREQQEE  413 (539)
Q Consensus       342 i~~~~~~~fP~L~~l~isva~v~L~pGgm------~~PHwhpnA~--ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~  413 (539)
                      ++.+.. ..|.+...+|.+..+.|.||.+      ..+|||++++  ||.||++|+|.+.+-...+              
T Consensus        53 ~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G--------------  117 (191)
T PRK04190         53 VYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEG--------------  117 (191)
T ss_pred             EEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCC--------------
Confidence            444443 3344566689999999999996      5679998664  9999999999999877654              


Q ss_pred             HHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          414 EEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       414 ~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                                ......+++||+++||+|++|.++|+++++|.++++...
T Consensus       118 ----------~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~p~  156 (191)
T PRK04190        118 ----------EARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACYPA  156 (191)
T ss_pred             ----------cEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEEcC
Confidence                      234578999999999999999999999999999986544

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.00  E-value=2.5e-09  Score=97.24  Aligned_cols=80  Identities=25%  Similarity=0.424  Sum_probs=70.3

Q ss_pred             ceeeEEEeeeCCCeee-cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLV-VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~-lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      ..|+++.+.++|+.-. +++|++.++++||++|+|+|.+=    ..++.|++||.++||+|++|++.|.| +.+|.++.+
T Consensus        34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~----~~~~~v~~gd~~~iP~g~~H~~~N~G-~~~L~liei  108 (127)
T COG0662          34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG----GEEVEVKAGDSVYIPAGTPHRVRNTG-KIPLVLIEV  108 (127)
T ss_pred             CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC----CEEEEecCCCEEEECCCCcEEEEcCC-CcceEEEEE
Confidence            5788888999999975 66677899999999999999983    57899999999999999999999999 599999988


Q ss_pred             eccCCC
Q 039441          278 LQPVNT  283 (539)
Q Consensus       278 ~d~~n~  283 (539)
                      -.+...
T Consensus       109 ~~p~~~  114 (127)
T COG0662         109 QSPPYL  114 (127)
T ss_pred             ecCCcC
Confidence            776554

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=98.93  E-value=5.1e-09  Score=83.93  Aligned_cols=69  Identities=23%  Similarity=0.450  Sum_probs=58.9

Q ss_pred             EeeeCCCeeecccccCCC-cEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          205 ILEANPSTLVVPHHSDAE-TILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       205 il~l~P~~l~lPh~~dA~-~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ++++.|++-..+|++... +++||++|++.+. ++.   ..+.|++||+++||+|+.|++.|.+ +++++++.|+
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~---~~~~l~~Gd~~~i~~~~~H~~~n~~-~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDG---ERVELKPGDAIYIPPGVPHQVRNPG-DEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETT---EEEEEETTEEEEEETTSEEEEEEES-SSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ecc---EEeEccCCEEEEECCCCeEEEEECC-CCCEEEEEEC
Confidence            466799997778866666 9999999999998 442   3899999999999999999999999 4789888765

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=98.92  E-value=8.1e-09  Score=100.87  Aligned_cols=110  Identities=21%  Similarity=0.339  Sum_probs=84.4

Q ss_pred             cCCCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccc-cCCCc--EEEEEeceEEEEE
Q 039441          160 ENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH-SDAET--ILVLLKGKGVITL  236 (539)
Q Consensus       160 ~~~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~-~dA~~--~~yV~~G~g~i~~  236 (539)
                      ..-|+++........++  +|.++    |+. +..+.|-...   ++.+.|++.++.|| .+|++  |.||+.|+|..++
T Consensus        49 ~~~~~~yel~~~~~~~~--~g~L~----~~~-t~~~pGs~g~---e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v  118 (209)
T COG2140          49 KEDDFVYELLESEPGER--GGDLR----LDV-TRIFPGSAGA---EVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLV  118 (209)
T ss_pred             CCCceEEEeeccccccc--CCeEE----EEe-eccCCCccce---EEEecCCcccccccCCCCCcccEEEEEeccEEEEE
Confidence            34466666555444555  88887    443 3455553222   23459999999995 58888  9999999999999


Q ss_pred             EeCCC-ceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          237 VSHER-RESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       237 v~pg~-~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      -.+++ ..+..+++||+++||.|..|++.|+| +++|+++.++-.
T Consensus       119 ~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~G-d~pLvf~~v~~~  162 (209)
T COG2140         119 QKPEGEARVIAVRAGDVIYVPPGYGHYTINTG-DEPLVFLNVYPA  162 (209)
T ss_pred             EcCCCcEEEEEecCCcEEEeCCCcceEeecCC-CCCEEEEEEEeC
Confidence            98774 56899999999999999999999999 599999888863

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=98.90  E-value=9.4e-09  Score=82.40  Aligned_cols=69  Identities=25%  Similarity=0.438  Sum_probs=61.5

Q ss_pred             EEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCC
Q 039441          362 YVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG  441 (539)
Q Consensus       362 ~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG  441 (539)
                      +++|.||+...+|+|+...++.||++|++.+. +..                          +  ...|++||+++||+|
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~--------------------------~--~~~l~~Gd~~~i~~~   52 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDG--------------------------E--RVELKPGDAIYIPPG   52 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETT--------------------------E--EEEEETTEEEEEETT
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ecc--------------------------E--EeEccCCEEEEECCC
Confidence            57899999999999988889999999999998 443                          1  257999999999999


Q ss_pred             CeEEEEcCCCCcEEEEEE
Q 039441          442 HPIALVASPNEKLLTVGF  459 (539)
Q Consensus       442 ~~h~i~n~gne~l~~v~F  459 (539)
                      -+|.+.|.+++++.+|.+
T Consensus        53 ~~H~~~n~~~~~~~~l~V   70 (71)
T PF07883_consen   53 VPHQVRNPGDEPARFLVV   70 (71)
T ss_dssp             SEEEEEEESSSEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEE
Confidence            999999999999999875

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.79  E-value=3.3e-08  Score=89.87  Aligned_cols=79  Identities=18%  Similarity=0.307  Sum_probs=70.2

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      ...+++.+.+.||+-..+|.|...+++.||++|+|.|.+=+.                             ...|++||+
T Consensus        34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~-----------------------------~~~v~~gd~   84 (127)
T COG0662          34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE-----------------------------EVEVKAGDS   84 (127)
T ss_pred             CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE-----------------------------EEEecCCCE
Confidence            468899999999999999999999999999999999977521                             257999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ++||+|.+|.+.|.|+.+|.++++...+
T Consensus        85 ~~iP~g~~H~~~N~G~~~L~liei~~p~  112 (127)
T COG0662          85 VYIPAGTPHRVRNTGKIPLVLIEVQSPP  112 (127)
T ss_pred             EEECCCCcEEEEcCCCcceEEEEEecCC
Confidence            9999999999999999999999976554

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.73  E-value=7.9e-08  Score=93.62  Aligned_cols=80  Identities=24%  Similarity=0.267  Sum_probs=67.2

Q ss_pred             eeeEEEeeeCCCee------eccccc---CCCcEEEEEeceEEEEEEeCC-CceeeecCCCcEEEeCCCCeEEEEecCCC
Q 039441          200 NYRLAILEANPSTL------VVPHHS---DAETILVLLKGKGVITLVSHE-RRESFNMEHGDVISVPAGTTYYLSNQDNV  269 (539)
Q Consensus       200 ~~Rl~il~l~P~~l------~lPh~~---dA~~~~yV~~G~g~i~~v~pg-~~~~~~v~~GDV~~iPaG~~h~i~N~g~~  269 (539)
                      ..++.+.+|.|+.+      .-+|||   +.+++.||++|+|++.+-+.+ ....+.+++||+++||+|++|.+.|+| +
T Consensus        67 ~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G-~  145 (191)
T PRK04190         67 DLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTG-D  145 (191)
T ss_pred             ceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECC-C
Confidence            45677788899997      346876   456999999999999986654 456899999999999999999999999 6


Q ss_pred             ceEEEEEEecc
Q 039441          270 DRLHVAKLLQP  280 (539)
Q Consensus       270 e~L~iv~l~d~  280 (539)
                      ++|+++++...
T Consensus       146 epl~fl~v~p~  156 (191)
T PRK04190        146 EPLVFLACYPA  156 (191)
T ss_pred             CCEEEEEEEcC
Confidence            89999998763

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.69  E-value=1.2e-07  Score=86.02  Aligned_cols=81  Identities=26%  Similarity=0.397  Sum_probs=68.2

Q ss_pred             ccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeee
Q 039441          351 QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANL  430 (539)
Q Consensus       351 P~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L  430 (539)
                      +.....++++..+.+.||+....|.||-...++||++|++++++-.+                           .  ..|
T Consensus        36 ~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~---------------------------~--~~l   86 (131)
T COG1917          36 PRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE---------------------------K--KEL   86 (131)
T ss_pred             cCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC---------------------------c--eEe
Confidence            33346678999999999999999999878899999999999998732                           1  469


Q ss_pred             CCCcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          431 SPGVVFIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       431 ~~GDV~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      ++||+++||+|..|+..|.++..+.+|++.
T Consensus        87 ~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~  116 (131)
T COG1917          87 KAGDVIIIPPGVVHGLKAVEDEPMVLLLVF  116 (131)
T ss_pred             cCCCEEEECCCCeeeeccCCCCceeEEEEe
Confidence            999999999999999999988765655543

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.69  E-value=1.1e-07  Score=86.76  Aligned_cols=77  Identities=12%  Similarity=0.212  Sum_probs=61.6

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      ++.+..++++|++-.-.|+++..++.||++|++.+..+..  .+++.|.+||.++||+|.+|+|.|.   +++++|+++.
T Consensus        34 ~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~--g~~~~L~aGD~i~~~~~~~H~~~N~---e~~~~l~v~t  108 (125)
T PRK13290         34 GFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLAT--GEVHPIRPGTMYALDKHDRHYLRAG---EDMRLVCVFN  108 (125)
T ss_pred             CEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCC--CEEEEeCCCeEEEECCCCcEEEEcC---CCEEEEEEEC
Confidence            3444455669999666666666789999999999985432  3579999999999999999999997   6788888887


Q ss_pred             cC
Q 039441          280 PV  281 (539)
Q Consensus       280 ~~  281 (539)
                      |.
T Consensus       109 P~  110 (125)
T PRK13290        109 PP  110 (125)
T ss_pred             CC
Confidence            53

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.67  E-value=1e-07  Score=86.35  Aligned_cols=78  Identities=21%  Similarity=0.373  Sum_probs=66.6

Q ss_pred             cceeeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          198 IDNYRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       198 v~~~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      -.++.++.++++|++..-.|.++ .+..+||++|++.+++-    ...+.+++||+|.||+|+.||+.|.++.. +..|+
T Consensus        40 ~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~----g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~-~~~l~  114 (131)
T COG1917          40 GENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE----GEKKELKAGDVIIIPPGVVHGLKAVEDEP-MVLLL  114 (131)
T ss_pred             CceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec----CCceEecCCCEEEECCCCeeeeccCCCCc-eeEEE
Confidence            35677788888999999999887 88999999999999985    56899999999999999999999998543 56666


Q ss_pred             Eecc
Q 039441          277 LLQP  280 (539)
Q Consensus       277 l~d~  280 (539)
                      ++..
T Consensus       115 v~~~  118 (131)
T COG1917         115 VFPL  118 (131)
T ss_pred             Eeee
Confidence            6654

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.59  E-value=4.8e-07  Score=82.47  Aligned_cols=76  Identities=20%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .++++.+++|.||+-...|+|.. .+++||++|++.+.++..+                         +.  ..|.+||+
T Consensus        33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g-------------------------~~--~~L~aGD~   84 (125)
T PRK13290         33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATG-------------------------EV--HPIRPGTM   84 (125)
T ss_pred             CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCC-------------------------EE--EEeCCCeE
Confidence            46788999999999888899855 6899999999999855321                         12  57999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      +++|++.+|.+.|.  +++++|++.+
T Consensus        85 i~~~~~~~H~~~N~--e~~~~l~v~t  108 (125)
T PRK13290         85 YALDKHDRHYLRAG--EDMRLVCVFN  108 (125)
T ss_pred             EEECCCCcEEEEcC--CCEEEEEEEC
Confidence            99999999999997  7899998654

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.48  E-value=6.9e-07  Score=90.89  Aligned_cols=77  Identities=22%  Similarity=0.181  Sum_probs=64.0

Q ss_pred             eeeEEEeeeCCCeeec-ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANPSTLVV-PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~l-Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ++.+.+++++|++-.= +||+.-.+..||++|+|++.+    +.+.+.|.+||+++||||++||++|+| +++|++|+.=
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~----~g~~~~V~~GD~i~i~~~~~h~~~~~G-~~~~~~l~yk  252 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL----DNNWVPVEAGDYIWMGAYCPQACYAGG-RGEFRYLLYK  252 (260)
T ss_pred             CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE----CCEEEEecCCCEEEECCCCCEEEEecC-CCcEEEEEEc
Confidence            5666778899999885 456777788999999999976    457899999999999999999999999 5889876644


Q ss_pred             ccCC
Q 039441          279 QPVN  282 (539)
Q Consensus       279 d~~n  282 (539)
                      | +|
T Consensus       253 d-~n  255 (260)
T TIGR03214       253 D-MN  255 (260)
T ss_pred             c-cc
Confidence            4 44

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.47  E-value=5.5e-07  Score=84.30  Aligned_cols=79  Identities=19%  Similarity=0.310  Sum_probs=66.4

Q ss_pred             CcceeeEEEeeeCCCeee-cccc-cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCC--CeEEEEecCCCceE
Q 039441          197 GIDNYRLAILEANPSTLV-VPHH-SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAG--TTYYLSNQDNVDRL  272 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~-lPh~-~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG--~~h~i~N~g~~e~L  272 (539)
                      |++.+.+.+..++|++.- ++|| +--++|+||+.|++++-+    ....+.|++||++.||||  ++|.++|.+ ...|
T Consensus        38 Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~----d~~e~~lrpGD~~gFpAG~~~aHhliN~s-~~~~  112 (161)
T COG3837          38 GLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE----DGGETRLRPGDSAGFPAGVGNAHHLINRS-DVIL  112 (161)
T ss_pred             ChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE----CCeeEEecCCceeeccCCCcceeEEeecC-CceE
Confidence            888999999999999976 5775 577899999999987654    234789999999999999  999999998 5777


Q ss_pred             EEEEEecc
Q 039441          273 HVAKLLQP  280 (539)
Q Consensus       273 ~iv~l~d~  280 (539)
                      +++.+-+.
T Consensus       113 ~yL~vG~r  120 (161)
T COG3837         113 RYLEVGTR  120 (161)
T ss_pred             EEEEeccc
Confidence            77776653

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.43  E-value=8.7e-07  Score=82.96  Aligned_cols=78  Identities=22%  Similarity=0.347  Sum_probs=67.1

Q ss_pred             ceeEEEEEEcCCcee-cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          357 DAGVTYVEINQGGMM-VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       357 ~isva~v~L~pGgm~-~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      ++.|....+.||+.. .+|||+.-.|++||++|++.+-+  .++                           ...|++||+
T Consensus        41 ~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~--d~~---------------------------e~~lrpGD~   91 (161)
T COG3837          41 RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE--DGG---------------------------ETRLRPGDS   91 (161)
T ss_pred             hcccceEEeCCCCccccccccccCceEEEEEcCceEEEE--CCe---------------------------eEEecCCce
Confidence            478889999999986 68999999999999999997643  211                           256999999


Q ss_pred             EEeCCC--CeEEEEcCCCCcEEEEEEeecC
Q 039441          436 FIIPPG--HPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG--~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +-+|+|  .+|.++|.++..+.+|++.+..
T Consensus        92 ~gFpAG~~~aHhliN~s~~~~~yL~vG~r~  121 (161)
T COG3837          92 AGFPAGVGNAHHLINRSDVILRYLEVGTRE  121 (161)
T ss_pred             eeccCCCcceeEEeecCCceEEEEEecccc
Confidence            999999  9999999999999999988765

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.41  E-value=2.4e-06  Score=87.28  Aligned_cols=207  Identities=24%  Similarity=0.279  Sum_probs=128.0

Q ss_pred             CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccC--CCC-C
Q 039441          209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV--NTP-G  285 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~--n~p-g  285 (539)
                      -|+-+.-+|-|+.+.+-||++|+|.-|+|+-+   ....++||.|..|+++.|.=-|.| .++++.+--+|..  +.- .
T Consensus       100 lPGEvApsHrHsqsAlRFvveG~Ga~T~VdGe---r~~M~~GDfilTP~w~wHdHgn~g-~eP~iWlDgLDiplv~~l~~  175 (351)
T COG3435         100 LPGEVAPSHRHNQSALRFVVEGKGAYTVVDGE---RTPMEAGDFILTPAWTWHDHGNEG-TEPCIWLDGLDIPLVNSLGA  175 (351)
T ss_pred             cCcccCCcccccccceEEEEeccceeEeecCc---eeeccCCCEEEccCceeccCCCCC-CCceEEEcccchHHHHhhcc
Confidence            68877777879999999999999999999865   457899999999999999999998 6888776666632  221 1


Q ss_pred             Cce-e---cccc-----CccEEEcChhhhhhcCccccccCCCCCCCCcceec--------------CCCCCcccCCCceE
Q 039441          286 QFR-V---QQRQ-----QGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNL--------------LSRKPIYNNNFGRF  342 (539)
Q Consensus       286 ~f~-~---~~q~-----~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl--------------~~~~p~~sn~~G~i  342 (539)
                      .|. .   .+++     .+.+.+.... ++-+.-..      +...+--||.              +...+.+  ++=.+
T Consensus       176 gFfe~~~e~~q~v~~~~~d~~ar~~~~-~rP~~~r~------~~~~SPlf~Y~w~~t~eAL~~la~~e~~dp~--dG~~~  246 (351)
T COG3435         176 GFFEEHPEEQQPVTRPEGDSLARYGPG-MRPLRHRW------GKPYSPLFNYAWDRTREALERLARLEEPDPF--DGYKM  246 (351)
T ss_pred             cccccCchhcCcccCCCCCchhhcCCC-ccccccCC------CCCCCcccccccccHHHHHHHHHhccCCCCC--CcceE
Confidence            222 2   1111     1122221111 11111100      0000000111              1111111  12223


Q ss_pred             EEeCCccc-ccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhc
Q 039441          343 FEATPKDY-QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSR  421 (539)
Q Consensus       343 ~~~~~~~f-P~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~  421 (539)
                      ..+++.+= -+.  ..|++.+--|.||-...+|-|++ +.|.-|++|+|.+.|-..                        
T Consensus       247 ryvNP~TGg~~m--ptI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig~~------------------------  299 (351)
T COG3435         247 RYVNPVTGGYAM--PTIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTIIGGE------------------------  299 (351)
T ss_pred             EEecCCCCCCcC--chHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEECCE------------------------
Confidence            44443221 011  12555666688888889998854 578889999998866332                        


Q ss_pred             ceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          422 ELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       422 ~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                         +  +..++||+||||.=+.|-+.|. .++..++||.+
T Consensus       300 ---r--f~~~~~D~fvVPsW~~~~~~~g-s~da~LFsfsD  333 (351)
T COG3435         300 ---R--FDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSFSD  333 (351)
T ss_pred             ---E--eeccCCCEEEccCcceeecccC-CcceEEEecCC
Confidence               3  6789999999999999999996 56677777743

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.39  E-value=4.6e-06  Score=80.17  Aligned_cols=75  Identities=17%  Similarity=0.266  Sum_probs=61.4

Q ss_pred             eeEEEeeeCCCeeec-ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          201 YRLAILEANPSTLVV-PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       201 ~Rl~il~l~P~~l~l-Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      +-+.++++.|++-.. ++|+...+++||++|++.+.+    +...+.|.+||.++||++++|.+.|.+ +++++++.+..
T Consensus       107 ~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~~~~~~H~~~n~~-~~~~~~l~~~~  181 (185)
T PRK09943        107 LAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI----NGQDYHLVAGQSYAINTGIPHSFSNTS-AGICRIISAHT  181 (185)
T ss_pred             eEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE----CCEEEEecCCCEEEEcCCCCeeeeCCC-CCCeEEEEEeC
Confidence            334455669988643 557888999999999999876    237899999999999999999999987 57888888765


Q ss_pred             c
Q 039441          280 P  280 (539)
Q Consensus       280 ~  280 (539)
                      |
T Consensus       182 p  182 (185)
T PRK09943        182 P  182 (185)
T ss_pred             C
Confidence            4

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.35  E-value=3.9e-06  Score=81.20  Aligned_cols=92  Identities=22%  Similarity=0.299  Sum_probs=56.9

Q ss_pred             ccccccceeEEEEEEcCCc------eecceecCC------CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441          351 QQLQEIDAGVTYVEINQGG------MMVPHYNSK------ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE  418 (539)
Q Consensus       351 P~L~~l~isva~v~L~pGg------m~~PHwhpn------A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~  418 (539)
                      ..|+..+|......|.||-      |..-|||+.      .+|+.+|++|+|.+-+-.+.+..                 
T Consensus        43 ~~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~-----------------  105 (182)
T PF06560_consen   43 EWLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDD-----------------  105 (182)
T ss_dssp             -------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-------------------
T ss_pred             ccceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCc-----------------
Confidence            4456667888888888886      567899998      89999999999999998887511                 


Q ss_pred             hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      -.   ..+.-.+.+||+++||.+++|..+|+|+++|.+.+....
T Consensus       106 ~~---~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~  146 (182)
T PF06560_consen  106 VG---DVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPR  146 (182)
T ss_dssp             ------EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred             ce---eEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEec
Confidence            00   255578999999999999999999999999999875543

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.31  E-value=9.3e-06  Score=76.44  Aligned_cols=88  Identities=16%  Similarity=0.210  Sum_probs=76.1

Q ss_pred             CceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441          339 FGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE  418 (539)
Q Consensus       339 ~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~  418 (539)
                      .|+...++..       -++.+-++.+.||..+.+|+|..-++.-+|++|.|.+++   ++                   
T Consensus        51 WG~~~~l~~~-------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~-------------------  101 (151)
T PF01050_consen   51 WGSYEVLDEG-------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD-------------------  101 (151)
T ss_pred             CcEEEEEEcc-------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC-------------------
Confidence            7887777743       357889999999999999999999999999999999986   21                   


Q ss_pred             hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                           +  ...|.+||+++||+|..|.+.|.|+.+|.||.+-+.
T Consensus       102 -----~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G  138 (151)
T PF01050_consen  102 -----E--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTG  138 (151)
T ss_pred             -----E--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecC
Confidence                 1  257999999999999999999999999999987654

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.26  E-value=4e-06  Score=92.00  Aligned_cols=88  Identities=16%  Similarity=0.196  Sum_probs=73.7

Q ss_pred             CceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441          339 FGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE  418 (539)
Q Consensus       339 ~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~  418 (539)
                      .|....+..       +-++.+..++|.||+-..+|+|+...++.||++|++.+.+=.                      
T Consensus       364 WG~~~~~~~-------~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg----------------------  414 (468)
T TIGR01479       364 WGKYDSIDQ-------GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD----------------------  414 (468)
T ss_pred             CCceEEEec-------CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC----------------------
Confidence            777555542       335889999999999889999999999999999999997532                      


Q ss_pred             hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                           +  +..|++||.++||+|.+|.+.|.+++++++|++.+.
T Consensus       415 -----~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~  451 (468)
T TIGR01479       415 -----E--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSG  451 (468)
T ss_pred             -----E--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence                 1  257999999999999999999999999999987653

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.25  E-value=5.4e-06  Score=91.18  Aligned_cols=77  Identities=19%  Similarity=0.293  Sum_probs=64.3

Q ss_pred             ceeeEEEeeeCCCeee-cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLV-VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~-lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .+|.+..|++.|++-. +|.|+...+..||++|++.+++=    -+++.|.+||.++||+|++|.|.|.| +++|+||.+
T Consensus       383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id----g~~~~L~~GDSi~ip~g~~H~~~N~g-~~~l~iI~V  457 (478)
T PRK15460        383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID----GDIKLLGENESIYIPLGATHCLENPG-KIPLDLIEV  457 (478)
T ss_pred             CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC----CEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEE
Confidence            4566777788999744 44466777999999999999883    36899999999999999999999999 589999998


Q ss_pred             ecc
Q 039441          278 LQP  280 (539)
Q Consensus       278 ~d~  280 (539)
                      ..+
T Consensus       458 ~~g  460 (478)
T PRK15460        458 RSG  460 (478)
T ss_pred             EcC
Confidence            753

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.25  E-value=9.9e-06  Score=76.24  Aligned_cols=75  Identities=20%  Similarity=0.426  Sum_probs=64.2

Q ss_pred             eeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .|.+..|+++|+.-+-.| |..-++..+|++|.|.|++    +...+.|.+||.++||+|+.|-|.|.| +.+|+|+=+-
T Consensus        62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~----~~~~~~~~~g~sv~Ip~g~~H~i~n~g-~~~L~~IEVq  136 (151)
T PF01050_consen   62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL----DDEEFTLKEGDSVYIPRGAKHRIENPG-KTPLEIIEVQ  136 (151)
T ss_pred             CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE----CCEEEEEcCCCEEEECCCCEEEEECCC-CcCcEEEEEe
Confidence            466666677999988777 7889999999999999997    457899999999999999999999998 5788877654


Q ss_pred             c
Q 039441          279 Q  279 (539)
Q Consensus       279 d  279 (539)
                      .
T Consensus       137 ~  137 (151)
T PF01050_consen  137 T  137 (151)
T ss_pred             c
Confidence            3

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.19  E-value=7.1e-06  Score=90.00  Aligned_cols=76  Identities=16%  Similarity=0.312  Sum_probs=63.8

Q ss_pred             ceeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .++-+.++++.|++-.-+| |+...+++||++|++.+.+    .-+++.|++||.++||+|++|.|.|.+ +++++++.+
T Consensus       374 ~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~----dg~~~~l~~GDsi~ip~~~~H~~~N~g-~~~~~~i~v  448 (468)
T TIGR01479       374 DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI----GDETLLLTENESTYIPLGVIHRLENPG-KIPLELIEV  448 (468)
T ss_pred             CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE----CCEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEE
Confidence            4677788888999865444 6667788899999999986    236789999999999999999999999 588999888


Q ss_pred             ec
Q 039441          278 LQ  279 (539)
Q Consensus       278 ~d  279 (539)
                      ..
T Consensus       449 ~~  450 (468)
T TIGR01479       449 QS  450 (468)
T ss_pred             Ec
Confidence            75

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=98.16  E-value=0.00021  Score=70.38  Aligned_cols=211  Identities=16%  Similarity=0.225  Sum_probs=130.3

Q ss_pred             eEEEeeccCccc-cc----ccCcc-eeeEEEeeeCCCeeec-cc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcE
Q 039441          181 HMRVLQRFSQKS-HL----LRGID-NYRLAILEANPSTLVV-PH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDV  252 (539)
Q Consensus       181 ~i~vl~~f~~~s-~~----l~gv~-~~Rl~il~l~P~~l~l-Ph-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV  252 (539)
                      ...+|+.|+.-. -.    +-|++ -+---|+++.|+|--- |- =-.|..++||++|+..+++    .-+++.|++|+-
T Consensus        35 Vts~Lp~w~~tr~wilsrP~~Gf~~tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~----~G~th~l~eggy  110 (264)
T COG3257          35 VTSILPFWENTRAWILSRPLSGFAATFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA----EGKTHALREGGY  110 (264)
T ss_pred             EEeecCCCCCceEEEEeccccchhhhhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE----cCeEEEeccCCe
Confidence            456677777533 11    22421 2223367889988554 33 2478899999999988876    336899999999


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCC
Q 039441          253 ISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRK  332 (539)
Q Consensus       253 ~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~  332 (539)
                      .++|+|+-+-+.|.. .++.+|-.+-..-                ..|. + +.  .|..-   .+......++.+.   
T Consensus       111 aylPpgs~~~~~N~~-~~~~rfhw~rk~Y----------------~~Vd-G-~~--~P~~~---~~Ne~ei~~~~m~---  163 (264)
T COG3257         111 AYLPPGSGWTLRNAQ-KEDSRFHWIRKRY----------------QPVE-G-VQ--APELV---SGNESEIEPSPME---  163 (264)
T ss_pred             EEeCCCCcceEeecc-CCceEEEEEeecc----------------eeec-C-cc--CCcce---ecChhhCCCCCCC---
Confidence            999999999999986 3444443322210                0010 0 00  00000   0000000111111   


Q ss_pred             CcccCCCceEEEeCCcccccccccceeEEEEEEcCCcee---cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhh
Q 039441          333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMM---VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQRE  409 (539)
Q Consensus       333 p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~---~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g  409 (539)
                         ..++-+.+.++++++    ..||.|..+++.|||..   +-|+-   .-=+||++|+|.-.+=..            
T Consensus       164 ---gtdg~~attv~P~d~----r~Dmhv~ivsFePGa~ip~aEtHvm---EHGlyvLeGk~vYrLn~d------------  221 (264)
T COG3257         164 ---GTDGVIATTVLPKEL----RFDMHVHIVSFEPGASIPYAETHVM---EHGLYVLEGKGVYRLNNN------------  221 (264)
T ss_pred             ---CCCCeEEEeeCcccc----CcceEEEEEEecCCcccchhhhhhh---hcceEEEecceEEeecCc------------
Confidence               122334556666654    45899999999999974   23331   234799999996543221            


Q ss_pred             hhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          410 QQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       410 ~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                                       -..|++||.+.+=|..|-+-++.|...+.+|-.++
T Consensus       222 -----------------wv~V~aGD~mwm~A~cpQacyagG~g~frYLlyKD  256 (264)
T COG3257         222 -----------------WVPVEAGDYIWMGAYCPQACYAGGRGAFRYLLYKD  256 (264)
T ss_pred             -----------------eEEeecccEEEeeccChhhhccCCCCceEEEEEec
Confidence                             14799999999999999999999887788876543

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.15  E-value=1.3e-05  Score=77.13  Aligned_cols=76  Identities=16%  Similarity=0.216  Sum_probs=61.3

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+.+..+.+.||+-..+++|....|++||++|++.+.+-.                           +.  ..|.+||.+
T Consensus       106 ~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~---------------------------~~--~~l~~Gd~~  156 (185)
T PRK09943        106 TLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTING---------------------------QD--YHLVAGQSY  156 (185)
T ss_pred             eeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECC---------------------------EE--EEecCCCEE
Confidence            4566677899999765444346799999999999987622                           12  579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      +||++.+|.+.|.+++++.++.+.+
T Consensus       157 ~~~~~~~H~~~n~~~~~~~~l~~~~  181 (185)
T PRK09943        157 AINTGIPHSFSNTSAGICRIISAHT  181 (185)
T ss_pred             EEcCCCCeeeeCCCCCCeEEEEEeC
Confidence            9999999999999999999988654

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.14  E-value=1.5e-05  Score=71.66  Aligned_cols=81  Identities=25%  Similarity=0.336  Sum_probs=68.2

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +|-+..|+|.||+-.--|.|-+-...+||++|++.+-.-+-                          --+...+.+||.|
T Consensus        45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--------------------------LE~ha~~~pGDf~   98 (142)
T COG4101          45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--------------------------LEEHAEVGPGDFF   98 (142)
T ss_pred             eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--------------------------eeeeEEecCCCeE
Confidence            57788999999999999999889999999999998754332                          1345789999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +||+|.||--+|.+++++..|...+..
T Consensus        99 YiPpgVPHqp~N~S~ep~s~vIaRsDp  125 (142)
T COG4101          99 YIPPGVPHQPANLSTEPLSAVIARSDP  125 (142)
T ss_pred             EcCCCCCCcccccCCCCeEEEEEccCC
Confidence            999999999999889998887655443

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.10  E-value=1.3e-05  Score=88.16  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=73.2

Q ss_pred             CceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441          339 FGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE  418 (539)
Q Consensus       339 ~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~  418 (539)
                      .|+...++.       +.++.+.+++|.||+-..+|+|....|+.||++|++.+++=..                     
T Consensus       373 WG~~~~l~~-------g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~---------------------  424 (478)
T PRK15460        373 WGKYDSIDA-------GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD---------------------  424 (478)
T ss_pred             CCceEeecC-------CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE---------------------
Confidence            576554432       3357889999999997777888888899999999999877542                     


Q ss_pred             hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                              +..|.+||.++||+|.+|.+.|.|++++++|++-+.+
T Consensus       425 --------~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~  461 (478)
T PRK15460        425 --------IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGS  461 (478)
T ss_pred             --------EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence                    2579999999999999999999999999999876543

>PRK11171 hypothetical protein; Provisional

Probab=98.09  E-value=2e-05  Score=80.51  Aligned_cols=76  Identities=22%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             eeEEEeeeCCCeeecc-cccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          201 YRLAILEANPSTLVVP-HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lP-h~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      +-+.+++|+|++-+-. |++...+.+||++|++++.+    +.+.+.|.+||+++||++++||+.|.| ++.++++..=|
T Consensus       184 ~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~----~~~~~~l~~GD~i~~~~~~~h~~~N~g-~~~~~yl~~k~  258 (266)
T PRK11171        184 MHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL----NNDWVEVEAGDFIWMRAYCPQACYAGG-PGPFRYLLYKD  258 (266)
T ss_pred             cEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCCEEEECCC-CCcEEEEEEcc
Confidence            4566688899987765 58899999999999999976    357899999999999999999999998 58887666444


Q ss_pred             cCC
Q 039441          280 PVN  282 (539)
Q Consensus       280 ~~n  282 (539)
                       +|
T Consensus       259 -~n  260 (266)
T PRK11171        259 -VN  260 (266)
T ss_pred             -cc
Confidence             44

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.05  E-value=1.6e-05  Score=75.41  Aligned_cols=67  Identities=21%  Similarity=0.331  Sum_probs=52.7

Q ss_pred             eeecccccCCCcEEEEEeceEEEEEEeCCCcee-eecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          212 TLVVPHHSDAETILVLLKGKGVITLVSHERRES-FNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       212 ~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~-~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .|+..|.|+.+++-||+.|+|...+-..+.... ..+++||+|.||||+.||+.=+ .+..++++=+|.
T Consensus        83 ~f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~-~~~~i~aiRlF~  150 (157)
T PF03079_consen   83 KFFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLG-ESPYIKAIRLFK  150 (157)
T ss_dssp             HHCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEES-TTSSEEEEEEES
T ss_pred             hhheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcC-CCCcEEEEEeec
Confidence            466789899999999999999999998888876 8999999999999999999854 467787777775

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.01  E-value=1.6e-05  Score=76.42  Aligned_cols=73  Identities=12%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC
Q 039441          209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG  285 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg  285 (539)
                      -||.=.--|+..+++|+|+++|...|.+++.|......|++||+|.||+|++|..+...+    .+++++.+...+|
T Consensus        42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~----tv~LviE~~r~~~  114 (177)
T PRK13264         42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAG----SIGLVIERKRPEG  114 (177)
T ss_pred             cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCC----eEEEEEEeCCCCC
Confidence            566555558889999999999999999999887789999999999999999999998542    2344454444333

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=97.97  E-value=1.7e-05  Score=72.89  Aligned_cols=61  Identities=26%  Similarity=0.461  Sum_probs=51.6

Q ss_pred             cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441          372 VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN  451 (539)
Q Consensus       372 ~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn  451 (539)
                      --|||++|+|++.|++|++.++|-.++|.                        .  -.|..|||++||+|..|....+ .
T Consensus        57 yHHYHs~aHEVl~vlrgqA~l~iGG~~G~------------------------e--l~v~~GDvlliPAGvGH~rl~s-S  109 (163)
T COG4297          57 YHHYHSGAHEVLGVLRGQAGLQIGGADGQ------------------------E--LEVGEGDVLLIPAGVGHCRLHS-S  109 (163)
T ss_pred             cccccCCcceEEEEecceeEEEecCCCCc------------------------e--eeecCCCEEEEecCcccccccC-C
Confidence            35899999999999999999999999873                        2  3699999999999999997665 4


Q ss_pred             CcEEEEEE
Q 039441          452 EKLLTVGF  459 (539)
Q Consensus       452 e~l~~v~F  459 (539)
                      -++.+|+-
T Consensus       110 ~DF~VvGa  117 (163)
T COG4297         110 ADFQVVGA  117 (163)
T ss_pred             CCeEEEcc
Confidence            56777753

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.89  E-value=3.9e-05  Score=72.64  Aligned_cols=60  Identities=18%  Similarity=0.311  Sum_probs=51.0

Q ss_pred             CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      -||+=.--|..++++|+||++|...|-+++.+......|++||++.||+|++|..+...+
T Consensus        36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~   95 (159)
T TIGR03037        36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAG   95 (159)
T ss_pred             CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence            444444445567999999999999999999887789999999999999999999998653

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=97.87  E-value=9.6e-05  Score=68.92  Aligned_cols=85  Identities=20%  Similarity=0.382  Sum_probs=54.1

Q ss_pred             ccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeC-----CCceeeecCCCcEEEeCCCCeEEEEecCCC
Q 039441          195 LRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSH-----ERRESFNMEHGDVISVPAGTTYYLSNQDNV  269 (539)
Q Consensus       195 l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~p-----g~~~~~~v~~GDV~~iPaG~~h~i~N~g~~  269 (539)
                      +-|+..+-+-+-++.||+---+|-|...+|++|++|+|++=+-..     |.+..+.+-+++.+.||.+.+|-+.|+++.
T Consensus        38 ~hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~  117 (167)
T PF02041_consen   38 LHGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEH  117 (167)
T ss_dssp             HH--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SS
T ss_pred             hcCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCC
Confidence            345555555555669999999999999999999999998877754     567899999999999999999999999988


Q ss_pred             ceEEEEEEec
Q 039441          270 DRLHVAKLLQ  279 (539)
Q Consensus       270 e~L~iv~l~d  279 (539)
                      ++|.++.+..
T Consensus       118 eDlqvlViiS  127 (167)
T PF02041_consen  118 EDLQVLVIIS  127 (167)
T ss_dssp             S-EEEEEEEE
T ss_pred             cceEEEEEec
Confidence            9999888775

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.75  E-value=0.00019  Score=68.14  Aligned_cols=70  Identities=13%  Similarity=0.232  Sum_probs=53.2

Q ss_pred             ceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEc
Q 039441          369 GMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA  448 (539)
Q Consensus       369 gm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n  448 (539)
                      -+...|.| ...+|-|++.|+|.+.|...+.                        .-++-.+.+||+++||+|..||..-
T Consensus        83 ~f~~EH~H-~deEvR~i~~G~g~Fdvr~~~~------------------------~wiri~~e~GDli~vP~g~~HrF~~  137 (157)
T PF03079_consen   83 KFFEEHTH-EDEEVRYIVDGSGYFDVRDGDD------------------------VWIRILCEKGDLIVVPAGTYHRFTL  137 (157)
T ss_dssp             HHCS-EEE-SS-EEEEEEECEEEEEEE-TTC------------------------EEEEEEEETTCEEEE-TT--EEEEE
T ss_pred             hhheeEec-ChheEEEEeCcEEEEEEEcCCC------------------------EEEEEEEcCCCEEecCCCCceeEEc
Confidence            45689999 6689999999999999998764                        3455689999999999999999988


Q ss_pred             CCCCcEEEEEEeecC
Q 039441          449 SPNEKLLTVGFSLNA  463 (539)
Q Consensus       449 ~gne~l~~v~F~~na  463 (539)
                      +.+..+..+=|+.++
T Consensus       138 ~~~~~i~aiRlF~~~  152 (157)
T PF03079_consen  138 GESPYIKAIRLFKDE  152 (157)
T ss_dssp             STTSSEEEEEEESSC
T ss_pred             CCCCcEEEEEeecCC
Confidence            877778888776554

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.71  E-value=0.00021  Score=61.19  Aligned_cols=70  Identities=24%  Similarity=0.441  Sum_probs=52.3

Q ss_pred             eeEEEeeeCCCeeecccc-cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEE
Q 039441          201 YRLAILEANPSTLVVPHH-SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA  275 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~-~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv  275 (539)
                      +--.+|+|.|++.--|.. .+.-.++||++|...|++    ...++.+.+||+|.||+|-.+.|.|.+ +++.++.
T Consensus        12 fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti----~~~~f~v~~G~~F~VP~gN~Y~i~N~~-~~~a~Lf   82 (85)
T PF11699_consen   12 FASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI----HETSFVVTKGGSFQVPRGNYYSIKNIG-NEEAKLF   82 (85)
T ss_dssp             -EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE----TTEEEEEETT-EEEE-TT-EEEEEE-S-SS-EEEE
T ss_pred             ceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE----cCcEEEEeCCCEEEECCCCEEEEEECC-CCcEEEE
Confidence            345677889999999887 577788999999999998    346899999999999999999999998 4555543

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=97.68  E-value=0.00074  Score=63.12  Aligned_cols=98  Identities=14%  Similarity=0.206  Sum_probs=58.3

Q ss_pred             cccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEee
Q 039441          350 YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISAN  429 (539)
Q Consensus       350 fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~  429 (539)
                      +..++.  +.|-+-+|.||+-..+|=| ...+|+||++|+|..-+..++..-      .|              +.-.+.
T Consensus        38 ~hGmke--vEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~------pG--------------~pqef~   94 (167)
T PF02041_consen   38 LHGMKE--VEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKY------PG--------------KPQEFP   94 (167)
T ss_dssp             HH--SS--EEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS----------------------S-EEEE
T ss_pred             hcCcee--eeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccC------CC--------------CceEEE
Confidence            345555  7899999999999999999 789999999999999998665321      01              123467


Q ss_pred             eCCCcEEEeCCCCeEEEEcCC-CCcEEEEEEeecCCCCcccccc
Q 039441          430 LSPGVVFIIPPGHPIALVASP-NEKLLTVGFSLNARNNQRNFLA  472 (539)
Q Consensus       430 L~~GDV~vVPaG~~h~i~n~g-ne~l~~v~F~~na~n~~~~fLA  472 (539)
                      +-+++.|.||.+-+|-+.|++ .++|.+|.+...  -+...|+.
T Consensus        95 ~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSr--pPvkvf~y  136 (167)
T PF02041_consen   95 IFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISR--PPVKVFIY  136 (167)
T ss_dssp             E-TTEEEEE-TT--EEEE---SSS-EEEEEEEES--SS--EEEE
T ss_pred             ecCCCeEEeCCCCcceeecCCCCcceEEEEEecC--CCeEEEEe
Confidence            999999999999999999997 588999876544  34555553

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=97.67  E-value=0.00013  Score=63.81  Aligned_cols=67  Identities=27%  Similarity=0.484  Sum_probs=45.5

Q ss_pred             CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441          367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL  446 (539)
Q Consensus       367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i  446 (539)
                      ++-.+.|||| +-.+|.||++|.+.+.+ ..                          +.  ..|++||+++||+|.+|..
T Consensus        12 ~~~~~~~h~h-~~~~i~~v~~G~~~~~~-~~--------------------------~~--~~l~~g~~~li~p~~~H~~   61 (136)
T PF02311_consen   12 PNFEFPPHWH-DFYEIIYVLSGEGTLHI-DG--------------------------QE--YPLKPGDLFLIPPGQPHSY   61 (136)
T ss_dssp             TT-SEEEETT--SEEEEEEEEE-EEEEE-TT--------------------------EE--EEE-TT-EEEE-TTS-EEE
T ss_pred             CCCccCCEEC-CCEEEEEEeCCEEEEEE-CC--------------------------EE--EEEECCEEEEecCCccEEE
Confidence            5566789999 68999999999999843 22                          12  5799999999999999999


Q ss_pred             EcCCCCcEEEEEEeecC
Q 039441          447 VASPNEKLLTVGFSLNA  463 (539)
Q Consensus       447 ~n~gne~l~~v~F~~na  463 (539)
                      ...++.++.++.+....
T Consensus        62 ~~~~~~~~~~~~i~~~~   78 (136)
T PF02311_consen   62 YPDSNEPWEYYWIYFSP   78 (136)
T ss_dssp             EE-TTSEEEEEEEEE--
T ss_pred             ecCCCCCEEEEEEEECH
Confidence            99876677766655443

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=97.62  E-value=0.00022  Score=69.13  Aligned_cols=79  Identities=24%  Similarity=0.313  Sum_probs=52.6

Q ss_pred             eeeEEEeeeCCCeee------cccc-------cCCCcEEEEEeceEEEEEEeCCC----c-eeeecCCCcEEEeCCCCeE
Q 039441          200 NYRLAILEANPSTLV------VPHH-------SDAETILVLLKGKGVITLVSHER----R-ESFNMEHGDVISVPAGTTY  261 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~------lPh~-------~dA~~~~yV~~G~g~i~~v~pg~----~-~~~~v~~GDV~~iPaG~~h  261 (539)
                      +.+..|..|.|+.+=      --||       .+.+++.+|++|+|++=+-.++.    . ....+.+||++.||+|.+|
T Consensus        49 ~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH  128 (182)
T PF06560_consen   49 NLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAH  128 (182)
T ss_dssp             -EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EE
T ss_pred             eEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceE
Confidence            355666667888752      1343       34799999999999999998876    2 2568899999999999999


Q ss_pred             EEEecCCCceEEEEEEec
Q 039441          262 YLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       262 ~i~N~g~~e~L~iv~l~d  279 (539)
                      -++|+| +++|+++++..
T Consensus       129 ~tIN~g-~~~L~~~~~~~  145 (182)
T PF06560_consen  129 RTINTG-DEPLVFAAWVP  145 (182)
T ss_dssp             EEEE-S-SS-EEEEEEEE
T ss_pred             EEEECC-CCcEEEEEEEe
Confidence            999999 68999888876

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.00028  Score=63.55  Aligned_cols=79  Identities=20%  Similarity=0.319  Sum_probs=63.1

Q ss_pred             CcceeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCc--eeeecCCCcEEEeCCCCeEEEEecCCCceEE
Q 039441          197 GIDNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERR--ESFNMEHGDVISVPAGTTYYLSNQDNVDRLH  273 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~--~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~  273 (539)
                      |-+..-+.+++|.|++=.=-| |-+-...+||++|++.+=+   |.+  +...+.+||.++||+|++|-=+|.. ++.|.
T Consensus        42 Gas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~---G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S-~ep~s  117 (142)
T COG4101          42 GASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY---GNRLEEHAEVGPGDFFYIPPGVPHQPANLS-TEPLS  117 (142)
T ss_pred             ccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeee---ccceeeeEEecCCCeEEcCCCCCCcccccC-CCCeE
Confidence            556677788899999988766 6788889999999987655   332  4567899999999999999999998 68886


Q ss_pred             EEEEec
Q 039441          274 VAKLLQ  279 (539)
Q Consensus       274 iv~l~d  279 (539)
                      .+....
T Consensus       118 ~vIaRs  123 (142)
T COG4101         118 AVIARS  123 (142)
T ss_pred             EEEEcc
Confidence            555443

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.60  E-value=0.0003  Score=60.18  Aligned_cols=72  Identities=19%  Similarity=0.270  Sum_probs=54.5

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .++...+.|.||+.-.|-..-+.+-+.||++|...|+|-..                             ++.+.+|++|
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~-----------------------------~f~v~~G~~F   61 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET-----------------------------SFVVTKGGSF   61 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE-----------------------------EEEEETT-EE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc-----------------------------EEEEeCCCEE
Confidence            48899999999999888877778999999999999988443                             2569999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEE
Q 039441          437 IIPPGHPIALVASPNEKLLTV  457 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v  457 (539)
                      .||+|-...+.|.++++..++
T Consensus        62 ~VP~gN~Y~i~N~~~~~a~Lf   82 (85)
T PF11699_consen   62 QVPRGNYYSIKNIGNEEAKLF   82 (85)
T ss_dssp             EE-TT-EEEEEE-SSS-EEEE
T ss_pred             EECCCCEEEEEECCCCcEEEE
Confidence            999999999999988776654

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=97.58  E-value=0.00036  Score=69.63  Aligned_cols=75  Identities=16%  Similarity=0.287  Sum_probs=57.8

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+...+|+++-.+  .|++++.+++.||++|+..+++    ...++.+.+||+++||+|+.|.+.+.+   ..++++++
T Consensus       155 s~m~aGf~~~~~~s--f~wtl~~dEi~YVLEGe~~l~I----dG~t~~l~pGDvlfIPkGs~~hf~tp~---~aRflyV~  225 (233)
T PRK15457        155 SSMAAGFMQWENAF--FPWTLNYDEIDMVLEGELHVRH----EGETMIAKAGDVMFIPKGSSIEFGTPS---SVRFLYVA  225 (233)
T ss_pred             CceeeEEEEEecCc--cceeccceEEEEEEEeEEEEEE----CCEEEEeCCCcEEEECCCCeEEecCCC---CeeEEEEE
Confidence            45666777788644  5688999999999999999998    367999999999999999995554443   45555555


Q ss_pred             ccCC
Q 039441          279 QPVN  282 (539)
Q Consensus       279 d~~n  282 (539)
                      -+.|
T Consensus       226 ~Pa~  229 (233)
T PRK15457        226 WPAN  229 (233)
T ss_pred             ecCc
Confidence            5443

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.52  E-value=0.00037  Score=66.41  Aligned_cols=67  Identities=19%  Similarity=0.438  Sum_probs=56.4

Q ss_pred             eeecccccCCCcEEEEEeceEEEEEEeCCCce-eeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          212 TLVVPHHSDAETILVLLKGKGVITLVSHERRE-SFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       212 ~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~-~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .|+.=|+|.++++.|++.|.|+.++..++++. .-.+.+||+|.||+|+-||+-=+- +..++.+-+|.
T Consensus        86 kF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~-~~~f~AvRlF~  153 (181)
T COG1791          86 KFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTE-SPNFKAVRLFT  153 (181)
T ss_pred             HHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccC-CCcEEEEEEee
Confidence            36667889999999999999999999999765 567888999999999999998765 45566666665

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=97.49  E-value=0.00078  Score=58.91  Aligned_cols=65  Identities=20%  Similarity=0.390  Sum_probs=46.5

Q ss_pred             CCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       210 P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      |+-..-|||++--+|.||++|.|++.+    ....+.|++||++.||+|.+|.+...++ .++..+.+.-
T Consensus        12 ~~~~~~~h~h~~~~i~~v~~G~~~~~~----~~~~~~l~~g~~~li~p~~~H~~~~~~~-~~~~~~~i~~   76 (136)
T PF02311_consen   12 PNFEFPPHWHDFYEIIYVLSGEGTLHI----DGQEYPLKPGDLFLIPPGQPHSYYPDSN-EPWEYYWIYF   76 (136)
T ss_dssp             TT-SEEEETT-SEEEEEEEEE-EEEEE----TTEEEEE-TT-EEEE-TTS-EEEEE-TT-SEEEEEEEEE
T ss_pred             CCCccCCEECCCEEEEEEeCCEEEEEE----CCEEEEEECCEEEEecCCccEEEecCCC-CCEEEEEEEE
Confidence            556667999999999999999999865    3467999999999999999999999873 4666555554

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.47  E-value=0.00031  Score=58.23  Aligned_cols=60  Identities=22%  Similarity=0.338  Sum_probs=46.9

Q ss_pred             eeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe
Q 039441          201 YRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN  265 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N  265 (539)
                      +...+.+..|+.+..+  ...++++||++|++.|+.-   .-.+..|++||+++||+|+..-|.-
T Consensus         7 ~~~g~w~~~pg~~~~~--~~~~E~~~vleG~v~it~~---~G~~~~~~aGD~~~~p~G~~~~w~v   66 (74)
T PF05899_consen    7 FSAGVWECTPGKFPWP--YPEDEFFYVLEGEVTITDE---DGETVTFKAGDAFFLPKGWTGTWEV   66 (74)
T ss_dssp             EEEEEEEEECEEEEEE--ESSEEEEEEEEEEEEEEET---TTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred             EEEEEEEECCceeEee--CCCCEEEEEEEeEEEEEEC---CCCEEEEcCCcEEEECCCCEEEEEE
Confidence            4566778899886655  3449999999999999843   4567999999999999999776543

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=97.43  E-value=0.00055  Score=65.98  Aligned_cols=58  Identities=16%  Similarity=0.279  Sum_probs=48.8

Q ss_pred             cCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE
Q 039441          366 NQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA  445 (539)
Q Consensus       366 ~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~  445 (539)
                      -||.-..-|+| .+.++.|+++|...+.|++.+                         +.-+..|++||+|+||+|.+|.
T Consensus        42 Gpn~r~d~H~~-~tdE~FyqleG~~~l~v~d~g-------------------------~~~~v~L~eGd~fllP~gvpHs   95 (177)
T PRK13264         42 GPNARTDFHYD-PGEEFFYQLEGDMYLKVQEDG-------------------------KRRDVPIREGEMFLLPPHVPHS   95 (177)
T ss_pred             cCCcccccccC-CCceEEEEECCeEEEEEEcCC-------------------------ceeeEEECCCCEEEeCCCCCcC
Confidence            46766677998 589999999999999999853                         2234689999999999999999


Q ss_pred             EEcC
Q 039441          446 LVAS  449 (539)
Q Consensus       446 i~n~  449 (539)
                      ..+.
T Consensus        96 P~r~   99 (177)
T PRK13264         96 PQRE   99 (177)
T ss_pred             CccC
Confidence            8774

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.41  E-value=0.00057  Score=72.12  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=66.1

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .|.+.+-.|.||-...||=| ++..|.||++|+|..++|+.                          ++  ..+++||+|
T Consensus        80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~g--------------------------~~--~~~~~gD~~  130 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVDG--------------------------ER--TTMHPGDFI  130 (335)
T ss_pred             hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEECC--------------------------EE--EeeeCCCEE
Confidence            57788889999999999999 88899999999997777765                          23  479999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      ++|.++.|...|.+++++.|+.+.+
T Consensus       131 ~tP~w~wH~H~n~~d~~~~wld~lD  155 (335)
T TIGR02272       131 ITPSWTWHDHGNPGDEPMIWLDGLD  155 (335)
T ss_pred             EeCCCeeEecccCCCCcEEEEecCC
Confidence            9999999999999898888876543

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.41  E-value=0.00095  Score=63.65  Aligned_cols=69  Identities=16%  Similarity=0.290  Sum_probs=59.3

Q ss_pred             eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441          370 MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS  449 (539)
Q Consensus       370 m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~  449 (539)
                      +..=|.| .+.||-|++.|.|.+.|..++|                        +.+.-.+.+||++.||+|.-||.--+
T Consensus        87 F~~EH~H-~d~EvRy~vaG~GiF~v~~~d~------------------------~~~~i~c~~gDLI~vP~gi~HwFtlt  141 (181)
T COG1791          87 FLQEHLH-TDDEVRYFVAGEGIFDVHSPDG------------------------KVYQIRCEKGDLISVPPGIYHWFTLT  141 (181)
T ss_pred             HHHHhcc-CCceEEEEEecceEEEEECCCC------------------------cEEEEEEccCCEEecCCCceEEEEcc
Confidence            3456888 8899999999999999999987                        36667889999999999999999888


Q ss_pred             CCCcEEEEEEeecC
Q 039441          450 PNEKLLTVGFSLNA  463 (539)
Q Consensus       450 gne~l~~v~F~~na  463 (539)
                      .+..++.|=+++++
T Consensus       142 ~~~~f~AvRlF~~~  155 (181)
T COG1791         142 ESPNFKAVRLFTEP  155 (181)
T ss_pred             CCCcEEEEEEeeCC
Confidence            77778888777665

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.40  E-value=0.0008  Score=63.88  Aligned_cols=59  Identities=12%  Similarity=0.207  Sum_probs=45.2

Q ss_pred             CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441          367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL  446 (539)
Q Consensus       367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i  446 (539)
                      ||+-.--|.|+ +.++.||++|...|.+...+.                         .-+..|++||+|+||+|.+|..
T Consensus        37 pn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~-------------------------~~~v~L~eGd~flvP~gvpHsP   90 (159)
T TIGR03037        37 PNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGK-------------------------REDVPIREGDIFLLPPHVPHSP   90 (159)
T ss_pred             CCCCcccccCC-CceEEEEEcceEEEEEEcCCc-------------------------EEEEEECCCCEEEeCCCCCccc
Confidence            33333334443 899999999999999888642                         2346899999999999999999


Q ss_pred             EcCCC
Q 039441          447 VASPN  451 (539)
Q Consensus       447 ~n~gn  451 (539)
                      .+..+
T Consensus        91 ~r~~~   95 (159)
T TIGR03037        91 QRPAG   95 (159)
T ss_pred             ccCCC
Confidence            88643

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.33  E-value=0.00085  Score=68.13  Aligned_cols=193  Identities=13%  Similarity=0.095  Sum_probs=83.7

Q ss_pred             CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc--eeeecCCCcEEEeCCCCeEEEEecCCCceEEE
Q 039441          197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR--ESFNMEHGDVISVPAGTTYYLSNQDNVDRLHV  274 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~--~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~i  274 (539)
                      |-..+||.+   .++--.-||+|+++.-+||++|....     +.+  ...-|.+|.-|++|||..|+....++ ..|.+
T Consensus        35 g~~~~~vkf---~~g~~~pph~H~~~~~~~Vi~G~~~~-----~~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~-~~~~~  105 (251)
T PF14499_consen   35 GPSGMRVKF---PAGFSSPPHIHNADYRGTVISGELHN-----GDPKAAAMWLPAGSYWFQPAGEPHITAAEGE-TNLLF  105 (251)
T ss_dssp             S-EEEEEEE----TT-EE--BEESS-EEEEEEESEEEE-----TTEE-----E-TTEEEEE-TT-EEEETTS-E-E-EEE
T ss_pred             CcceEEEEc---CCCccCCCcceeeeEEEEEEEeEEEc-----CCCcccceecCCCceEeccCCCceeeeccCc-cEEEE
Confidence            556667766   66666678999999999999996444     333  23569999999999999999888763 33322


Q ss_pred             EEEeccCCCCCCcee---------cc----ccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCce
Q 039441          275 AKLLQPVNTPGQFRV---------QQ----RQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGR  341 (539)
Q Consensus       275 v~l~d~~n~pg~f~~---------~~----q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~  341 (539)
                      +-+   .+  |.|..         +.    ..+..|+=+...++.         |-            +.. .....+=.
T Consensus       106 ~e~---g~--gp~~v~p~~~~~~~~e~p~n~~~~~ivwld~~dl~---------W~------------~~~-~~~~~g~~  158 (251)
T PF14499_consen  106 IEI---GE--GPYDVKPSEEAFDNGERPINVDKDNIVWLDASDLE---------WI------------SAP-PGPPPGAQ  158 (251)
T ss_dssp             EE----S-----EE---------SS--TT--GGG-EEEEECCCS-----------E------------E-S-SSTT-SEE
T ss_pred             EEe---CC--CccccccccccccccccccccccccceEeccccCC---------cc------------ccC-CCCCCcce
Confidence            211   11  11211         00    011222211111000         00            000 00000111


Q ss_pred             EEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhc
Q 039441          342 FFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSR  421 (539)
Q Consensus       342 i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~  421 (539)
                      +..+...  |  ++-.+...++.|..|.=-.+|+| ...+=+||++|....++-.-.                       
T Consensus       159 ~a~Lwgd--~--~~g~~~gll~kLPagf~g~i~~h-~~~eraVvI~G~~~~~~~~~~-----------------------  210 (251)
T PF14499_consen  159 IAFLWGD--P--NTGQYTGLLLKLPAGFTGRIHTH-ASNERAVVISGELDYQSYGAS-----------------------  210 (251)
T ss_dssp             EEEEEE---T--TS-EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE-----------------------
T ss_pred             EEEEecC--C--CCCceeeEEEEcCCCCcCceecc-CCceEEEEEEeEEEEeecccC-----------------------
Confidence            2222211  0  01124455667766666788998 667889999999877443321                       


Q ss_pred             ceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEE
Q 039441          422 ELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       422 ~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~  458 (539)
                          -...|.+|.-|.-|....|-+.++ +++..++.
T Consensus       211 ----~~~~L~~GSYf~s~~~~~H~~~~~-e~~~vlyI  242 (251)
T PF14499_consen  211 ----NFGTLDPGSYFGSPGHITHGIFIT-EDECVLYI  242 (251)
T ss_dssp             ----TTEEEEE-TT-EE--E------EE-SS-EEEEE
T ss_pred             ----CCccccCCcccccCCccccccccc-CCCEEEEE
Confidence                125689999999999999998744 55555543

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=97.32  E-value=0.0015  Score=65.23  Aligned_cols=70  Identities=14%  Similarity=0.193  Sum_probs=54.1

Q ss_pred             ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      +..|++.++.+....+   .|+.+-.||.||++|+..+.+   ++                        +  ++.+++||
T Consensus       154 ~s~m~aGf~~~~~~sf---~wtl~~dEi~YVLEGe~~l~I---dG------------------------~--t~~l~pGD  201 (233)
T PRK15457        154 GSSMAAGFMQWENAFF---PWTLNYDEIDMVLEGELHVRH---EG------------------------E--TMIAKAGD  201 (233)
T ss_pred             CCceeeEEEEEecCcc---ceeccceEEEEEEEeEEEEEE---CC------------------------E--EEEeCCCc
Confidence            4468999999998665   499999999999999999988   23                        2  25799999


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEEEE
Q 039441          435 VFIIPPGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~v~  458 (539)
                      +++||.|..|.....+  ...+++
T Consensus       202 vlfIPkGs~~hf~tp~--~aRfly  223 (233)
T PRK15457        202 VMFIPKGSSIEFGTPS--SVRFLY  223 (233)
T ss_pred             EEEECCCCeEEecCCC--CeeEEE
Confidence            9999999995444432  455544

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.19  E-value=0.0042  Score=56.59  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=69.0

Q ss_pred             ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      ++|+|+-...|.+|.-...||- |--|-+|+++|+|.++.+..+                         +  .+.+++|.
T Consensus        32 gmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~~G-------------------------~--~~~i~pGt   83 (126)
T PF06339_consen   32 GMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLDTG-------------------------E--VHPIKPGT   83 (126)
T ss_pred             CCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEccCC-------------------------c--EEEcCCCe
Confidence            6789999999999999999995 999999999999999998753                         1  26899999


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          435 VFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +++.-+.=.|++.+..  +|.++|++.-
T Consensus        84 ~YaLd~hD~H~lra~~--dm~~vCVFnP  109 (126)
T PF06339_consen   84 MYALDKHDRHYLRAKT--DMRLVCVFNP  109 (126)
T ss_pred             EEecCCCccEEEEecC--CEEEEEEcCC
Confidence            9999999999999975  7999997633

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=97.15  E-value=0.0019  Score=55.25  Aligned_cols=60  Identities=17%  Similarity=0.285  Sum_probs=48.7

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~  266 (539)
                      ...++.|+++.|++.+-.|.|...+.+||++|....    .+    ..+.+||.++.|+|+.|-+...
T Consensus        22 ~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~----~~~~~G~~~~~p~g~~h~~~s~   81 (91)
T PF12973_consen   22 TGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GD----GRYGAGDWLRLPPGSSHTPRSD   81 (91)
T ss_dssp             TTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TT----CEEETTEEEEE-TTEEEEEEES
T ss_pred             ccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CC----ccCCCCeEEEeCCCCccccCcC
Confidence            356889999999999999999999999999998763    22    3569999999999999999964

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=97.13  E-value=0.015  Score=62.86  Aligned_cols=59  Identities=17%  Similarity=0.243  Sum_probs=41.5

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      ..+..+.+..+...   +......|++|++|++.+..   ++                        ..  ..|++|++++
T Consensus       321 F~~~~~~l~~~~~~---~~~~~~~Illv~~G~~~i~~---~~------------------------~~--~~l~~G~~~f  368 (389)
T PRK15131        321 FAFSLHDLSDQPTT---LSQQSAAILFCVEGEAVLWK---GE------------------------QQ--LTLKPGESAF  368 (389)
T ss_pred             cEEEEEEECCceEE---ecCCCcEEEEEEcceEEEEe---CC------------------------eE--EEECCCCEEE
Confidence            55566666554333   23467899999999998742   22                        12  4699999999


Q ss_pred             eCCCCeEEEEc
Q 039441          438 IPPGHPIALVA  448 (539)
Q Consensus       438 VPaG~~h~i~n  448 (539)
                      ||++...+.+.
T Consensus       369 ipa~~~~~~~~  379 (389)
T PRK15131        369 IAANESPVTVS  379 (389)
T ss_pred             EeCCCccEEEe
Confidence            99998877664

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.13  E-value=0.002  Score=53.32  Aligned_cols=60  Identities=17%  Similarity=0.195  Sum_probs=44.9

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      +++..-..+||.+. -+|  ..+|++||++|++.++.-  +|                        ..  .+|++||+++
T Consensus         7 ~~~g~w~~~pg~~~-~~~--~~~E~~~vleG~v~it~~--~G------------------------~~--~~~~aGD~~~   55 (74)
T PF05899_consen    7 FSAGVWECTPGKFP-WPY--PEDEFFYVLEGEVTITDE--DG------------------------ET--VTFKAGDAFF   55 (74)
T ss_dssp             EEEEEEEEECEEEE-EEE--SSEEEEEEEEEEEEEEET--TT------------------------EE--EEEETTEEEE
T ss_pred             EEEEEEEECCceeE-eeC--CCCEEEEEEEeEEEEEEC--CC------------------------CE--EEEcCCcEEE
Confidence            56777788898764 334  459999999999988754  43                        12  5799999999


Q ss_pred             eCCCCeEEEEc
Q 039441          438 IPPGHPIALVA  448 (539)
Q Consensus       438 VPaG~~h~i~n  448 (539)
                      +|+|+...+..
T Consensus        56 ~p~G~~~~w~v   66 (74)
T PF05899_consen   56 LPKGWTGTWEV   66 (74)
T ss_dssp             E-TTEEEEEEE
T ss_pred             ECCCCEEEEEE
Confidence            99999776544

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=97.07  E-value=0.0014  Score=67.91  Aligned_cols=65  Identities=18%  Similarity=0.210  Sum_probs=57.2

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      +.+++++-...|.....+|||+.=+|.||++|.+.+.+    +..++.|.+||++.|++|++|.+...+
T Consensus        24 ~~~~~~~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~i----~g~~~~l~~Gd~ili~s~~~H~~~~~~   88 (302)
T PRK10371         24 EYQRLEIEFRPPHIMPTSHWHGQVEVNVPFDGDVEYLI----NNEKVQINQGHITLFWACTPHQLTDPG   88 (302)
T ss_pred             CCceeEEEeeCCCCCCCCCccccEEEEEecCCcEEEEE----CCEEEEEcCCcEEEEecCCcccccccC
Confidence            67889998889999999999999999999999987655    346888999999999999999887655

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.04  E-value=0.0087  Score=55.00  Aligned_cols=99  Identities=15%  Similarity=0.118  Sum_probs=55.7

Q ss_pred             ccCCCceEEEeCCcccccccccceeEEEEE-EcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHH
Q 039441          335 YNNNFGRFFEATPKDYQQLQEIDAGVTYVE-INQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEE  413 (539)
Q Consensus       335 ~sn~~G~i~~~~~~~fP~L~~l~isva~v~-L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~  413 (539)
                      +...-|.+..+...+...+.-  -.+..+. ..+|..+..|+|...+++++|++|+..+.+-+...              
T Consensus        11 ~~D~RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~--------------   74 (131)
T PF05523_consen   11 ISDERGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGRE--------------   74 (131)
T ss_dssp             EEETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS---------------
T ss_pred             eeCCCCcEEEEeccCCCCCCc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCC--------------
Confidence            344478877777653222221  3455554 44555599999999999999999999998766542              


Q ss_pred             HHHHhhhcceeeEEeeeCCC-cEEEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          414 EEEEESSRELQKISANLSPG-VVFIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       414 ~~~e~~~~~y~~~~~~L~~G-DV~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                                 .-.+.|..- .++.||+|+.|.+.|.+.+ ..++++..
T Consensus        75 -----------~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~as  111 (131)
T PF05523_consen   75 -----------EEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLAS  111 (131)
T ss_dssp             -----------EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEES
T ss_pred             -----------cEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEcC
Confidence                       233456444 6999999999999998655 66666543

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=97.02  E-value=0.0026  Score=64.32  Aligned_cols=63  Identities=17%  Similarity=0.272  Sum_probs=48.7

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      .+.+.+.. .......||||+.-++.||++|.+.+.+    ....+.|.+||++.||+|..|.+....
T Consensus        23 ~~~~~~~~-~~~~~~~~H~H~~~ei~~v~~G~~~~~i----~~~~~~l~~g~l~~i~p~~~H~~~~~~   85 (278)
T PRK10296         23 NFHVFIYN-KTESVSGLHQHDYYEFTLVLTGRYYQEI----NGKRVLLERGDFVFIPLGSHHQSFYEF   85 (278)
T ss_pred             eEEEEEEe-hhhcCCCCcccccEEEEEEEeceEEEEE----CCEEEEECCCcEEEeCCCCccceeeeC
Confidence            44444422 1233457999999999999999998777    335789999999999999999876554

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=97.00  E-value=0.0028  Score=54.16  Aligned_cols=58  Identities=19%  Similarity=0.273  Sum_probs=47.0

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +..+.++.+.||+.+..|.| ...+.+|||+|....    .+                             ..+.+||.+
T Consensus        23 g~~~~L~r~~pG~~~p~H~H-~g~ee~~VLeG~~~d----~~-----------------------------~~~~~G~~~   68 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRH-PGGEEILVLEGELSD----GD-----------------------------GRYGAGDWL   68 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEE-SS-EEEEEEECEEEE----TT-----------------------------CEEETTEEE
T ss_pred             cCEEEEEEECCCCCcCccCC-CCcEEEEEEEEEEEE----CC-----------------------------ccCCCCeEE
Confidence            56899999999999999999 667888999999853    21                             246999999


Q ss_pred             EeCCCCeEEEEc
Q 039441          437 IIPPGHPIALVA  448 (539)
Q Consensus       437 vVPaG~~h~i~n  448 (539)
                      +.|+|..|...+
T Consensus        69 ~~p~g~~h~~~s   80 (91)
T PF12973_consen   69 RLPPGSSHTPRS   80 (91)
T ss_dssp             EE-TTEEEEEEE
T ss_pred             EeCCCCccccCc
Confidence            999999999986

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=96.99  E-value=0.0016  Score=67.35  Aligned_cols=64  Identities=13%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      -+.+.....|..|..+||| +.-+|.||++|.+.+.+-.                           +.  ..|.+||+++
T Consensus        26 ~~~~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i~g---------------------------~~--~~l~~Gd~il   75 (302)
T PRK10371         26 QRLEIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLINN---------------------------EK--VQINQGHITL   75 (302)
T ss_pred             ceeEEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEECC---------------------------EE--EEEcCCcEEE
Confidence            4455666778899999999 8899999999998765421                           12  5699999999


Q ss_pred             eCCCCeEEEEcCCC
Q 039441          438 IPPGHPIALVASPN  451 (539)
Q Consensus       438 VPaG~~h~i~n~gn  451 (539)
                      ||+|.+|.+...++
T Consensus        76 i~s~~~H~~~~~~~   89 (302)
T PRK10371         76 FWACTPHQLTDPGN   89 (302)
T ss_pred             EecCCcccccccCC
Confidence            99999998776544

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=96.94  E-value=0.0032  Score=62.61  Aligned_cols=73  Identities=15%  Similarity=0.070  Sum_probs=61.3

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +..+.++.|.||+-+..|.| ...|+.+|++|.-    .+..                             ..+.+||++
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f----~de~-----------------------------g~y~~Gd~i  171 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAF----SDET-----------------------------GVYGVGDFE  171 (215)
T ss_pred             CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEE----EcCC-----------------------------CccCCCeEE
Confidence            36789999999999999999 7788999999994    2222                             357999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      .+|.|..|...+.+++++..+++.+.+
T Consensus       172 ~~p~~~~H~p~a~~~~~Cicl~v~dap  198 (215)
T TIGR02451       172 EADGSVQHQPRTVSGGDCLCLAVLDAP  198 (215)
T ss_pred             ECCCCCCcCcccCCCCCeEEEEEecCC
Confidence            999999999999988888888766544

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PRK13500 transcriptional activator RhaR; Provisional

Probab=96.94  E-value=0.0021  Score=66.70  Aligned_cols=56  Identities=14%  Similarity=0.253  Sum_probs=44.8

Q ss_pred             cCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE
Q 039441          366 NQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA  445 (539)
Q Consensus       366 ~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~  445 (539)
                      .|.....|||| +..+|+||++|.|.+.+=..                             ...|.+|||++||+|.+|.
T Consensus        56 ~~~~~~~~H~H-~~~el~~v~~G~g~~~v~~~-----------------------------~~~l~~Gdl~~I~~~~~H~  105 (312)
T PRK13500         56 YPQDVFAEHTH-DFCELVIVWRGNGLHVLNDR-----------------------------PYRITRGDLFYIHADDKHS  105 (312)
T ss_pred             CCCCCCCcccc-ceEEEEEEEcCeEEEEECCE-----------------------------EEeecCCeEEEECCCCeec
Confidence            34455689999 79999999999998644322                             2579999999999999999


Q ss_pred             EEcCCC
Q 039441          446 LVASPN  451 (539)
Q Consensus       446 i~n~gn  451 (539)
                      .....+
T Consensus       106 ~~~~~~  111 (312)
T PRK13500        106 YASVND  111 (312)
T ss_pred             ccccCC
Confidence            876544

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=96.90  E-value=0.0046  Score=57.99  Aligned_cols=62  Identities=16%  Similarity=0.283  Sum_probs=45.0

Q ss_pred             eeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          207 EANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       207 ~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      .--||.=--=|+-..++|+|.++|...+.+++.|......|++||++.+|++++|+=+=..+
T Consensus        39 VGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~  100 (151)
T PF06052_consen   39 VGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPAD  100 (151)
T ss_dssp             EESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred             EcCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence            34555555556778999999999999999999998899999999999999999999887654

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=96.89  E-value=0.0022  Score=65.43  Aligned_cols=53  Identities=21%  Similarity=0.260  Sum_probs=43.4

Q ss_pred             ceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEc
Q 039441          369 GMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA  448 (539)
Q Consensus       369 gm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n  448 (539)
                      .-+.|||| +-.+|+||++|+|.+.|   ++                          ....|.+||+++||+|.+|.+..
T Consensus        29 ~~~~~H~H-~~~ei~~i~~G~~~~~i---~~--------------------------~~~~l~~g~~~~I~p~~~H~~~~   78 (290)
T PRK13501         29 ETFVEHTH-QFCEIVIVWRGNGLHVL---ND--------------------------HPYRITCGDVFYIQAADHHSYES   78 (290)
T ss_pred             CCCccccc-cceeEEEEecCceEEEE---CC--------------------------eeeeecCCeEEEEcCCCcccccc
Confidence            33579999 89999999999999886   21                          12579999999999999999876


Q ss_pred             CCC
Q 039441          449 SPN  451 (539)
Q Consensus       449 ~gn  451 (539)
                      .++
T Consensus        79 ~~~   81 (290)
T PRK13501         79 VHD   81 (290)
T ss_pred             cCC
Confidence            544

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=96.88  E-value=0.012  Score=54.08  Aligned_cols=100  Identities=17%  Similarity=0.275  Sum_probs=59.8

Q ss_pred             eEecCCceEEEeeccCcccccccCcceeeEEEeeeCC-Ceeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCc
Q 039441          174 RVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANP-STLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGD  251 (539)
Q Consensus       174 ~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P-~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GD  251 (539)
                      .+..+-|.+.+++.++.  ..|   ...|+-++.--| +..+=.| |....++++|++|+..|.+-+.....++.|..-+
T Consensus        10 ~~~D~RG~L~~~e~~~~--ipf---~i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~   84 (131)
T PF05523_consen   10 KISDERGSLSVIERFDD--IPF---EIKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPN   84 (131)
T ss_dssp             EEEETTEEEEEEETTTS--SSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TT
T ss_pred             ceeCCCCcEEEEeccCC--CCC---CccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCC
Confidence            45677899998777633  112   233555554344 4447777 6799999999999999998877777888886664


Q ss_pred             -EEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          252 -VISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       252 -V~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                       ++.||+|+.|-+.|.+++  ++++.+.+.
T Consensus        85 ~~L~Ippg~w~~~~~~s~~--svlLv~as~  112 (131)
T PF05523_consen   85 KGLYIPPGVWHGIKNFSED--SVLLVLASE  112 (131)
T ss_dssp             EEEEE-TT-EEEEE---TT---EEEEEESS
T ss_pred             eEEEECCchhhHhhccCCC--cEEEEEcCC
Confidence             999999999999999854  656665553

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=96.85  E-value=0.0037  Score=59.03  Aligned_cols=74  Identities=23%  Similarity=0.341  Sum_probs=53.3

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+...+|+|+...  +|...+-+++-||+.|+-.|.  ..  -.++..++|||++||+|+..-+--.+   ..+++.+..
T Consensus        76 ~l~~Gf~~le~~~--f~wtl~YDEi~~VlEG~L~i~--~~--G~~~~A~~GDvi~iPkGs~I~fst~~---~a~~~Yv~y  146 (152)
T PF06249_consen   76 RLSAGFMELEKTS--FPWTLTYDEIKYVLEGTLEIS--ID--GQTVTAKPGDVIFIPKGSTITFSTPD---YARFFYVTY  146 (152)
T ss_dssp             SSEEEEEEEEEEE--EEEE-SSEEEEEEEEEEEEEE--ET--TEEEEEETT-EEEE-TT-EEEEEEEE---EEEEEEEEE
T ss_pred             ceeeEEEEEeCCC--ccEEeecceEEEEEEeEEEEE--EC--CEEEEEcCCcEEEECCCCEEEEecCC---CEEEEEEEC
Confidence            5667788888743  577789999999999975554  44  47889999999999999988775543   466777776


Q ss_pred             cCC
Q 039441          280 PVN  282 (539)
Q Consensus       280 ~~n  282 (539)
                      |.|
T Consensus       147 Pa~  149 (152)
T PF06249_consen  147 PAN  149 (152)
T ss_dssp             STT
T ss_pred             CCc
Confidence            654

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=96.84  E-value=0.0055  Score=61.93  Aligned_cols=52  Identities=21%  Similarity=0.196  Sum_probs=42.2

Q ss_pred             CceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEE
Q 039441          368 GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALV  447 (539)
Q Consensus       368 Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~  447 (539)
                      +....|||| +..+|+||++|.+.+.|   ++                        +.  ..|.+||+++||+|..|...
T Consensus        33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~------------------------~~--~~l~~g~l~~i~p~~~H~~~   82 (278)
T PRK10296         33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NG------------------------KR--VLLERGDFVFIPLGSHHQSF   82 (278)
T ss_pred             hcCCCCccc-ccEEEEEEEeceEEEEE---CC------------------------EE--EEECCCcEEEeCCCCcccee
Confidence            445689999 89999999999998766   22                        12  57999999999999999765


Q ss_pred             cC
Q 039441          448 AS  449 (539)
Q Consensus       448 n~  449 (539)
                      ..
T Consensus        83 ~~   84 (278)
T PRK10296         83 YE   84 (278)
T ss_pred             ee
Confidence            43

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=96.83  E-value=0.003  Score=62.75  Aligned_cols=72  Identities=14%  Similarity=0.093  Sum_probs=60.7

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      ..++.++++.|++-+..|-|...++.+|++|.-    .+    +...+.+||++.+|+|+.|...+.+ ++++.++.++|
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f----~d----e~g~y~~Gd~i~~p~~~~H~p~a~~-~~~Cicl~v~d  196 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAF----SD----ETGVYGVGDFEEADGSVQHQPRTVS-GGDCLCLAVLD  196 (215)
T ss_pred             CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEE----Ec----CCCccCCCeEEECCCCCCcCcccCC-CCCeEEEEEec
Confidence            457889999999999999788889999999993    22    2346899999999999999999997 57788888887


Q ss_pred             c
Q 039441          280 P  280 (539)
Q Consensus       280 ~  280 (539)
                      .
T Consensus       197 a  197 (215)
T TIGR02451       197 A  197 (215)
T ss_pred             C
Confidence            3

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.79  E-value=0.0066  Score=65.87  Aligned_cols=56  Identities=14%  Similarity=0.278  Sum_probs=37.2

Q ss_pred             ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       218 ~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .+|.++++||.+|++.|....    =...|++||+++||.|+.+.+.=.+ ..++.|+=.+
T Consensus       143 NaDGD~Li~~q~G~l~l~Te~----G~L~v~pGd~~VIPRG~~~rv~l~~-p~rgyi~E~~  198 (424)
T PF04209_consen  143 NADGDELIFPQQGSLRLETEF----GRLDVRPGDYVVIPRGTRFRVELPG-PARGYIIENF  198 (424)
T ss_dssp             ESSEEEEEEEEES-EEEEETT----EEEEE-TTEEEEE-TT--EEEE-SS-SEEEEEEEEE
T ss_pred             cCCCCEEEEEEECCEEEEecC----eeEEEcCCeEEEECCeeEEEEEeCC-CceEEEEEcC
Confidence            689999999999999886522    1356999999999999999987664 4444444433

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=96.77  E-value=0.028  Score=58.47  Aligned_cols=60  Identities=22%  Similarity=0.215  Sum_probs=42.0

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ..++.++.+... +.  ..+.++..|++|++|++.+..  .+                           .+..|++|+++
T Consensus       234 ~F~~~~~~~~~~-~~--~~~~~~~~il~v~~G~~~i~~--~~---------------------------~~~~l~~G~~~  281 (302)
T TIGR00218       234 YFSVYKWDISGK-AE--FIQQQSALILSVLEGSGRIKS--GG---------------------------KTLPLKKGESF  281 (302)
T ss_pred             CeEEEEEEeCCc-ee--eccCCCcEEEEEEcceEEEEE--CC---------------------------EEEEEecccEE
Confidence            366677777643 21  123467899999999998742  22                           12569999999


Q ss_pred             EeCCCCeEEEEc
Q 039441          437 IIPPGHPIALVA  448 (539)
Q Consensus       437 vVPaG~~h~i~n  448 (539)
                      +||++...+.+.
T Consensus       282 ~ipa~~~~~~i~  293 (302)
T TIGR00218       282 FIPAHLGPFTIE  293 (302)
T ss_pred             EEccCCccEEEE
Confidence            999999766654

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PRK13502 transcriptional activator RhaR; Provisional

Probab=96.75  E-value=0.0037  Score=63.26  Aligned_cols=63  Identities=16%  Similarity=0.245  Sum_probs=48.1

Q ss_pred             eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441          359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII  438 (539)
Q Consensus       359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV  438 (539)
                      .+..-...|.-...+||| +..+|+||++|.+.+.+-..                           .  ..|++||+++|
T Consensus        19 ~~~~~~~~~~~~~~~H~h-~~~~l~~v~~G~~~~~i~~~---------------------------~--~~l~~g~l~li   68 (282)
T PRK13502         19 AVTVADRYPQDVFAEHTH-EFCELVMVWRGNGLHVLNER---------------------------P--YRITRGDLFYI   68 (282)
T ss_pred             ceEEecCCCCCCCCcccc-ceEEEEEEecCcEEEEECCE---------------------------E--EeecCCcEEEE
Confidence            333334455555789999 78999999999999876221                           2  57999999999


Q ss_pred             CCCCeEEEEcCCC
Q 039441          439 PPGHPIALVASPN  451 (539)
Q Consensus       439 PaG~~h~i~n~gn  451 (539)
                      |+|.+|.+...++
T Consensus        69 ~~~~~H~~~~~~~   81 (282)
T PRK13502         69 RAEDKHSYTSVND   81 (282)
T ss_pred             CCCCcccccccCC
Confidence            9999999876544

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=96.59  E-value=0.017  Score=52.72  Aligned_cols=88  Identities=14%  Similarity=0.278  Sum_probs=72.4

Q ss_pred             cCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe
Q 039441          188 FSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN  265 (539)
Q Consensus       188 f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N  265 (539)
                      |+.+-=+|+  |+ .+.+.+-.+.|++=...||.|-=+-+|+++|+|.|..+..|  .++.|++|.++++-+-=.|+|..
T Consensus        21 w~SrRlll~~Dgm-GFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G--~~~~i~pGt~YaLd~hD~H~lra   97 (126)
T PF06339_consen   21 WESRRLLLKDDGM-GFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTG--EVHPIKPGTMYALDKHDRHYLRA   97 (126)
T ss_pred             ceEEEEEEccCCC-CEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCC--cEEEcCCCeEEecCCCccEEEEe
Confidence            444333455  33 35566666799999999999999999999999999998644  78999999999999999999998


Q ss_pred             cCCCceEEEEEEeccC
Q 039441          266 QDNVDRLHVAKLLQPV  281 (539)
Q Consensus       266 ~g~~e~L~iv~l~d~~  281 (539)
                      ..   +|+++++|.|.
T Consensus        98 ~~---dm~~vCVFnPp  110 (126)
T PF06339_consen   98 KT---DMRLVCVFNPP  110 (126)
T ss_pred             cC---CEEEEEEcCCC
Confidence            64   79999999974

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PRK13500 transcriptional activator RhaR; Provisional

Probab=96.59  E-value=0.0065  Score=63.05  Aligned_cols=55  Identities=16%  Similarity=0.404  Sum_probs=47.2

Q ss_pred             CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      -|.....||||+.-+|+||++|.|.+.+    +...+.|.+|||++||+|.+|.+....
T Consensus        56 ~~~~~~~~H~H~~~el~~v~~G~g~~~v----~~~~~~l~~Gdl~~I~~~~~H~~~~~~  110 (312)
T PRK13500         56 YPQDVFAEHTHDFCELVIVWRGNGLHVL----NDRPYRITRGDLFYIHADDKHSYASVN  110 (312)
T ss_pred             CCCCCCCccccceEEEEEEEcCeEEEEE----CCEEEeecCCeEEEECCCCeecccccC
Confidence            4555567999999999999999999776    336899999999999999999988754

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=96.55  E-value=0.0045  Score=62.61  Aligned_cols=63  Identities=16%  Similarity=0.254  Sum_probs=47.2

Q ss_pred             CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441          367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL  446 (539)
Q Consensus       367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i  446 (539)
                      -+..+.||||.+-.+|+||++|.+.+.+  .+                         +  ...+.+||+++||+|.+|.+
T Consensus        32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~--~~-------------------------~--~~~l~~g~~~ii~~~~~H~~   82 (287)
T TIGR02297        32 FGRNMPVHFHDRYYQLHYLTEGSIALQL--DE-------------------------H--EYSEYAPCFFLTPPSVPHGF   82 (287)
T ss_pred             cCCCCCCcccccceeEEEEeeCceEEEE--CC-------------------------E--EEEecCCeEEEeCCCCcccc
Confidence            3456899999447899999999997655  21                         1  25799999999999999998


Q ss_pred             EcCCCCcEEEEE
Q 039441          447 VASPNEKLLTVG  458 (539)
Q Consensus       447 ~n~gne~l~~v~  458 (539)
                      ....+....++.
T Consensus        83 ~~~~~~~~~~i~   94 (287)
T TIGR02297        83 VTDLDADGHVLT   94 (287)
T ss_pred             ccCCCcceEEEE
Confidence            765443333343

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PRK13503 transcriptional activator RhaS; Provisional

Probab=96.50  E-value=0.0056  Score=61.51  Aligned_cols=55  Identities=20%  Similarity=0.212  Sum_probs=44.8

Q ss_pred             cCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE
Q 039441          366 NQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA  445 (539)
Q Consensus       366 ~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~  445 (539)
                      .+.....+||| +..+|+||++|.+.+.|=..                             ...|++||+++||+|-+|.
T Consensus        23 ~~~~~~~~H~H-~~~ei~~v~~G~~~~~i~~~-----------------------------~~~l~~g~~~~i~~~~~h~   72 (278)
T PRK13503         23 LPQAAFPEHHH-DFHEIVIVEHGTGIHVFNGQ-----------------------------PYTLSGGTVCFVRDHDRHL   72 (278)
T ss_pred             Ccccccccccc-CceeEEEEecCceeeEecCC-----------------------------cccccCCcEEEECCCccch
Confidence            45566789999 99999999999998765433                             2579999999999999998


Q ss_pred             EEcCC
Q 039441          446 LVASP  450 (539)
Q Consensus       446 i~n~g  450 (539)
                      ..+..
T Consensus        73 ~~~~~   77 (278)
T PRK13503         73 YEHTD   77 (278)
T ss_pred             hhhcc
Confidence            76653

>PRK13501 transcriptional activator RhaR; Provisional

Probab=96.48  E-value=0.0074  Score=61.56  Aligned_cols=51  Identities=20%  Similarity=0.364  Sum_probs=45.3

Q ss_pred             eecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          213 LVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       213 l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      -+.|||||--++.||++|+|++.+    +...+.+.+||++.||+|.+|++...+
T Consensus        30 ~~~~H~H~~~ei~~i~~G~~~~~i----~~~~~~l~~g~~~~I~p~~~H~~~~~~   80 (290)
T PRK13501         30 TFVEHTHQFCEIVIVWRGNGLHVL----NDHPYRITCGDVFYIQAADHHSYESVH   80 (290)
T ss_pred             CCccccccceeEEEEecCceEEEE----CCeeeeecCCeEEEEcCCCcccccccC
Confidence            355899999999999999999987    347899999999999999999988654

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=96.39  E-value=0.0075  Score=61.37  Aligned_cols=75  Identities=20%  Similarity=0.190  Sum_probs=48.4

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      -+-+..+|.+.+|=...|||| +++.-+||++|.....    +.                        +....-|.+|.-
T Consensus        34 ~g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~----~~------------------------~a~~~~l~~Gsy   84 (251)
T PF14499_consen   34 DGPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG----DP------------------------KAAAMWLPAGSY   84 (251)
T ss_dssp             TS-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----TE------------------------E-----E-TTEE
T ss_pred             CCcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----CC------------------------cccceecCCCce
Confidence            367889999999999999999 9999999999975542    21                        122346999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEE
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F  459 (539)
                      +..|+|.+|+..+.+.+.+.|+.+
T Consensus        85 ~~~PaG~~h~~~~~~~~~~~~~e~  108 (251)
T PF14499_consen   85 WFQPAGEPHITAAEGETNLLFIEI  108 (251)
T ss_dssp             EEE-TT-EEEETTS-EE-EEEEE-
T ss_pred             EeccCCCceeeeccCccEEEEEEe
Confidence            999999999998887777777743

>PRK13503 transcriptional activator RhaS; Provisional

Probab=96.36  E-value=0.0067  Score=60.99  Aligned_cols=54  Identities=20%  Similarity=0.393  Sum_probs=45.6

Q ss_pred             CCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       210 P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      |.....+||++.-+|+||++|.+.+.+    +...+.|.+||++.||+|.+|.+.+.+
T Consensus        24 ~~~~~~~H~H~~~ei~~v~~G~~~~~i----~~~~~~l~~g~~~~i~~~~~h~~~~~~   77 (278)
T PRK13503         24 PQAAFPEHHHDFHEIVIVEHGTGIHVF----NGQPYTLSGGTVCFVRDHDRHLYEHTD   77 (278)
T ss_pred             ccccccccccCceeEEEEecCceeeEe----cCCcccccCCcEEEECCCccchhhhcc
Confidence            344556799999999999999998776    224799999999999999999887764

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=96.21  E-value=0.11  Score=54.51  Aligned_cols=59  Identities=25%  Similarity=0.389  Sum_probs=40.7

Q ss_pred             ceeEEEEEEcC-CceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          357 DAGVTYVEINQ-GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       357 ~isva~v~L~p-Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      +.++....+.. ..+...    .+..|++|++|.|.+..=   +                        ++  ..|++|+.
T Consensus       241 ~F~l~~~~i~~~~~~~~~----~~~~il~v~eG~~~l~~~---~------------------------~~--~~l~~G~s  287 (312)
T COG1482         241 DFALYKWDISGTAEFIKQ----ESFSILLVLEGEGTLIGG---G------------------------QT--LKLKKGES  287 (312)
T ss_pred             ceEEEEEeccChhhhccC----CCcEEEEEEcCeEEEecC---C------------------------EE--EEEcCCcE
Confidence            35666677764 333322    478999999999987432   2                        23  57999999


Q ss_pred             EEeCCCCeEEEEc
Q 039441          436 FIIPPGHPIALVA  448 (539)
Q Consensus       436 ~vVPaG~~h~i~n  448 (539)
                      ++||+...-|.+-
T Consensus       288 ~~ipa~~~~~~i~  300 (312)
T COG1482         288 FFIPANDGPYTIE  300 (312)
T ss_pred             EEEEcCCCcEEEE
Confidence            9999995555444

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=96.13  E-value=0.04  Score=59.95  Aligned_cols=166  Identities=14%  Similarity=0.191  Sum_probs=89.7

Q ss_pred             ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc-CCCC------------
Q 039441          218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP-VNTP------------  284 (539)
Q Consensus       218 ~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~-~n~p------------  284 (539)
                      -+|.++++|+.+|++.|..-.-    ...|++||+++||.|+.+.+.=.++..++.|+=++.. ...|            
T Consensus       151 NaDGD~Livpq~G~l~i~TEfG----~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g~~f~LPdlGpiG~nglan  226 (438)
T PRK05341        151 NADGELLIVPQQGRLRLATELG----VLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYGAPFRLPDLGPIGANGLAN  226 (438)
T ss_pred             cCCCCEEEEEEeCCEEEEEecc----ceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecCCcccCCCCCcccccCCCC
Confidence            4799999999999999876321    4678999999999999998874332344444444431 1111            


Q ss_pred             -CCcee-----cc--ccCccEEEcChhhhhhcC----ccccccCCCCCCCCcceecCCCCCc--cc-----CCCceEEEe
Q 039441          285 -GQFRV-----QQ--RQQGTIKRASQEQLKALS----HHASSRRRHGRGSTAPFNLLSRKPI--YN-----NNFGRFFEA  345 (539)
Q Consensus       285 -g~f~~-----~~--q~~G~Ivrv~~eql~~l~----~~~~~~~~~~~~~~~~fnl~~~~p~--~s-----n~~G~i~~~  345 (539)
                       ..|..     ..  .+--+|+|.. +++....    |-.-- .|.++-.+..|||..-.|+  ++     +..-.+.++
T Consensus       227 pRDF~~P~a~~ed~~~~~~vv~K~~-G~l~~~~~~hsPfDVV-aWhGn~~Pykydl~~F~pi~svs~dH~dPSI~tvlta  304 (438)
T PRK05341        227 PRDFLTPVAAFEDREGPFELVAKFG-GRLWRAEIDHSPLDVV-AWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFTVLTS  304 (438)
T ss_pred             hhHcCCCcchhcccCCCEEEEEEeC-CeeEEEecCCCCceEe-eecCcccceEeehhheeeccccccccCCCCceEEEec
Confidence             11111     00  0111344442 2232221    10000 1234445667788655444  11     111222333


Q ss_pred             CCcccccccccceeEE--EEEEcCCceecceecCC-CCEEEEEEeceE
Q 039441          346 TPKDYQQLQEIDAGVT--YVEINQGGMMVPHYNSK-ATTIVLVVEGRG  390 (539)
Q Consensus       346 ~~~~fP~L~~l~isva--~v~L~pGgm~~PHwhpn-A~ei~yV~~G~g  390 (539)
                      . .+.|.....|+-+.  +--..++++..|.||.| .+|+++.+.|.-
T Consensus       305 p-s~~pg~a~~dFVIF~PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y  351 (438)
T PRK05341        305 P-SDTPGTANIDFVIFPPRWLVAENTFRPPWFHRNVMSEFMGLIHGVY  351 (438)
T ss_pred             c-CCCCCccccceEEECCcccCCCCccCCCCCccchhhhhhhhccccc
Confidence            2 23444333333221  11237999999999988 568888888864

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=96.09  E-value=0.051  Score=58.95  Aligned_cols=56  Identities=16%  Similarity=0.293  Sum_probs=42.1

Q ss_pred             ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       218 ~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      -+|.++++|+.+|.+.|..-.-    ...|++||+++||.|+.|.+.=.+ ..++.|+=++
T Consensus       145 NaDGD~Livpq~G~l~i~TEfG----~L~v~pgei~VIPRG~~frv~l~g-p~rgyi~E~~  200 (429)
T TIGR01015       145 NADGDFLIVPQQGALLITTEFG----RLLVEPNEICVIPRGVRFRVTVLE-PARGYICEVY  200 (429)
T ss_pred             ccCCCEEEEEEeCcEEEEEecc----ceEecCCCEEEecCccEEEEeeCC-CceEEEEecc
Confidence            3799999999999998875321    457999999999999998887554 3444444333

Missing in human disease alkaptonuria.

>PRK13502 transcriptional activator RhaR; Provisional

Probab=96.05  E-value=0.013  Score=59.29  Aligned_cols=54  Identities=15%  Similarity=0.401  Sum_probs=45.6

Q ss_pred             CCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       210 P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      |+-...|||++.-++.||++|.|.+.+    ...++.+.+||++.||+|.+|.+...+
T Consensus        27 ~~~~~~~H~h~~~~l~~v~~G~~~~~i----~~~~~~l~~g~l~li~~~~~H~~~~~~   80 (282)
T PRK13502         27 PQDVFAEHTHEFCELVMVWRGNGLHVL----NERPYRITRGDLFYIRAEDKHSYTSVN   80 (282)
T ss_pred             CCCCCCccccceEEEEEEecCcEEEEE----CCEEEeecCCcEEEECCCCcccccccC
Confidence            334456899999999999999999886    335799999999999999999987654

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=95.92  E-value=0.026  Score=53.39  Aligned_cols=61  Identities=21%  Similarity=0.352  Sum_probs=44.6

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .|++.++.|....   ..|..+-+||-||++|+..+.  .. |                        +++  ..++|||+
T Consensus        76 ~l~~Gf~~le~~~---f~wtl~YDEi~~VlEG~L~i~--~~-G------------------------~~~--~A~~GDvi  123 (152)
T PF06249_consen   76 RLSAGFMELEKTS---FPWTLTYDEIKYVLEGTLEIS--ID-G------------------------QTV--TAKPGDVI  123 (152)
T ss_dssp             SSEEEEEEEEEEE---EEEE-SSEEEEEEEEEEEEEE--ET-T------------------------EEE--EEETT-EE
T ss_pred             ceeeEEEEEeCCC---ccEEeecceEEEEEEeEEEEE--EC-C------------------------EEE--EEcCCcEE
Confidence            5889999999853   469999999999999976665  33 3                        344  57999999


Q ss_pred             EeCCCCeEEEEcC
Q 039441          437 IIPPGHPIALVAS  449 (539)
Q Consensus       437 vVPaG~~h~i~n~  449 (539)
                      +||.|.-+.+-..
T Consensus       124 ~iPkGs~I~fst~  136 (152)
T PF06249_consen  124 FIPKGSTITFSTP  136 (152)
T ss_dssp             EE-TT-EEEEEEE
T ss_pred             EECCCCEEEEecC
Confidence            9999999887554

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=95.86  E-value=0.055  Score=53.06  Aligned_cols=91  Identities=21%  Similarity=0.303  Sum_probs=52.2

Q ss_pred             EEEEcC-CceecceecCCCCEEEEEEeceEEEEEecCCCCc----cchhh-hhhhhH---HHHHHh---hhcceeeEEee
Q 039441          362 YVEINQ-GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR----WSQES-QREQQE---EEEEEE---SSRELQKISAN  429 (539)
Q Consensus       362 ~v~L~p-Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~----~s~~~-~~g~~~---~~~~e~---~~~~y~~~~~~  429 (539)
                      .+-|.+ |+....||.+ .+.|..++.|+=++.++.|.-..    ..... +..-..   ..-...   .....+.+...
T Consensus       134 ~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~  212 (251)
T PF13621_consen  134 NLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVV  212 (251)
T ss_dssp             EEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEE
T ss_pred             EEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEE
Confidence            344444 7788899986 78999999999999999997433    00000 000000   000000   01112567789


Q ss_pred             eCCCcEEEeCCCCeEEEEcCCCCc
Q 039441          430 LSPGVVFIIPPGHPIALVASPNEK  453 (539)
Q Consensus       430 L~~GDV~vVPaG~~h~i~n~gne~  453 (539)
                      |++|||++||+|+.|++.|..+++
T Consensus       213 l~pGD~LfiP~gWwH~V~~~~~~~  236 (251)
T PF13621_consen  213 LEPGDVLFIPPGWWHQVENLSDDD  236 (251)
T ss_dssp             EETT-EEEE-TT-EEEEEESTTSS
T ss_pred             ECCCeEEEECCCCeEEEEEcCCCC
Confidence            999999999999999999983333

...

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=95.85  E-value=0.018  Score=58.29  Aligned_cols=53  Identities=13%  Similarity=0.098  Sum_probs=44.6

Q ss_pred             eeecccccC-CCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          212 TLVVPHHSD-AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       212 ~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      ....||||+ --++.||++|.+.+.+  .+  ..+.+.+||++.||+|.+|.+....+
T Consensus        34 ~~~~~H~H~~~~~l~~~~~G~~~~~~--~~--~~~~l~~g~~~ii~~~~~H~~~~~~~   87 (287)
T TIGR02297        34 RNMPVHFHDRYYQLHYLTEGSIALQL--DE--HEYSEYAPCFFLTPPSVPHGFVTDLD   87 (287)
T ss_pred             CCCCCcccccceeEEEEeeCceEEEE--CC--EEEEecCCeEEEeCCCCccccccCCC
Confidence            456799998 6899999999998666  22  48899999999999999999987653

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=95.82  E-value=0.014  Score=53.99  Aligned_cols=58  Identities=24%  Similarity=0.434  Sum_probs=43.0

Q ss_pred             cc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          216 PH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       216 Ph-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      .| |++|.+++-|+.|++.|-+=-+++. ...|.+||++.||||+.|--.-.  +-++.|+.
T Consensus        58 HHYHs~aHEVl~vlrgqA~l~iGG~~G~-el~v~~GDvlliPAGvGH~rl~s--S~DF~VvG  116 (163)
T COG4297          58 HHYHSGAHEVLGVLRGQAGLQIGGADGQ-ELEVGEGDVLLIPAGVGHCRLHS--SADFQVVG  116 (163)
T ss_pred             ccccCCcceEEEEecceeEEEecCCCCc-eeeecCCCEEEEecCcccccccC--CCCeEEEc
Confidence            44 5799999999999998877555544 56799999999999999844332  23444443

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=95.76  E-value=0.15  Score=49.42  Aligned_cols=73  Identities=18%  Similarity=0.122  Sum_probs=54.9

Q ss_pred             cCCceecceecCC--CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeCC
Q 039441          366 NQGGMMVPHYNSK--ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIPP  440 (539)
Q Consensus       366 ~pGgm~~PHwhpn--A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVPa  440 (539)
                      .+|.++.+|++..  -+++++|++|+...-+|+..-.+                   ..| +.....|.+  +..++||.
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~S-------------------pTfG~~~~~~L~~~~~~~l~IP~  112 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNS-------------------PTFGKWVGVLLSAENKRQLWIPE  112 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCc-------------------CCCCeEEEEEECCCCCCEEEeCC
Confidence            6799999999843  68999999999999999975322                   111 234456766  67999999


Q ss_pred             CCeEEEEcCCCCcEEEEE
Q 039441          441 GHPIALVASPNEKLLTVG  458 (539)
Q Consensus       441 G~~h~i~n~gne~l~~v~  458 (539)
                      |++|-..+.+++ ..++-
T Consensus       113 G~aHGF~~L~d~-a~v~Y  129 (176)
T TIGR01221       113 GFAHGFVVLSDE-AEFLY  129 (176)
T ss_pred             cceeEEEEcCCC-eEEEE
Confidence            999999997654 44443

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=95.72  E-value=0.02  Score=51.89  Aligned_cols=58  Identities=24%  Similarity=0.350  Sum_probs=45.9

Q ss_pred             EEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec
Q 039441          204 AILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       204 ~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~  266 (539)
                      .|-+..|+.++.  ..+.++.+|+++|++.++   ++.-+...|++||+++||+|+.--|-=.
T Consensus        48 GiWe~TpG~~r~--~y~~~E~chil~G~v~~T---~d~Ge~v~~~aGD~~~~~~G~~g~W~V~  105 (116)
T COG3450          48 GIWECTPGKFRV--TYDEDEFCHILEGRVEVT---PDGGEPVEVRAGDSFVFPAGFKGTWEVL  105 (116)
T ss_pred             eEEEecCccceE--EcccceEEEEEeeEEEEE---CCCCeEEEEcCCCEEEECCCCeEEEEEe
Confidence            456667777764  345699999999999877   6778899999999999999987654433

>PLN02658 homogentisate 1,2-dioxygenase

Probab=95.61  E-value=0.11  Score=56.60  Aligned_cols=57  Identities=18%  Similarity=0.345  Sum_probs=42.6

Q ss_pred             ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       218 ~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      -+|.++++|+.+|.+.|..-.-    ...|++||+++||.|+.+.+.=.++..++.|+=++
T Consensus       144 NaDGD~Livpq~G~l~i~TEfG----~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~  200 (435)
T PLN02658        144 NADGDFLIVPQQGRLWIKTELG----KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF  200 (435)
T ss_pred             cCCCCEEEEEEeCCEEEEEecc----ceEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence            4799999999999998875321    45789999999999999888743333444444444

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=95.60  E-value=0.14  Score=49.52  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=55.2

Q ss_pred             EcCCceecceecCCC---CEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCCCc--EEEe
Q 039441          365 INQGGMMVPHYNSKA---TTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSPGV--VFII  438 (539)
Q Consensus       365 L~pGgm~~PHwhpnA---~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~GD--V~vV  438 (539)
                      -.+|.++.+||+..-   ++++.|++|+...-+|+.--.+                   +.| +.....|.+++  .++|
T Consensus        50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~S-------------------pTfg~~~~~~Ls~~n~~~l~I  110 (176)
T PF00908_consen   50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGS-------------------PTFGKWVSVELSAENPRQLYI  110 (176)
T ss_dssp             EETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTS-------------------TTTT-EEEEEEETTT--EEEE
T ss_pred             ccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCC-------------------CCCCEEEEEEeCccccCEEEe
Confidence            346999999999876   7999999999999999864221                   111 35567786665  8999


Q ss_pred             CCCCeEEEEcCCCCcEEEEEEee
Q 039441          439 PPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       439 PaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      |+|++|-..+.+++ ..++.+.+
T Consensus       111 P~G~aHGf~~l~d~-a~v~Y~~t  132 (176)
T PF00908_consen  111 PPGVAHGFQTLEDD-AEVLYKVT  132 (176)
T ss_dssp             -TTEEEEEEESSSE-EEEEEEES
T ss_pred             CCcceeeEEeccCc-eEEEEecC
Confidence            99999999998654 44444333

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>COG1741 Pirin-related protein [General function prediction only]

Probab=95.59  E-value=1.2  Score=46.14  Aligned_cols=208  Identities=17%  Similarity=0.118  Sum_probs=113.2

Q ss_pred             eCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCC-CceeeecCCCcEEEeCCC--CeEEEEec-CCCceEEEEEEeccCC
Q 039441          208 ANPSTLVVPH-HSDAETILVLLKGKGVITLVSHE-RRESFNMEHGDVISVPAG--TTYYLSNQ-DNVDRLHVAKLLQPVN  282 (539)
Q Consensus       208 l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg-~~~~~~v~~GDV~~iPaG--~~h~i~N~-g~~e~L~iv~l~d~~n  282 (539)
                      +.|+..+-|| |.+-+-|.||++|+.    -+.+ .-..-.+++|||-.+-||  +.|+=.|. ..+..|..+-+.-.  
T Consensus        51 ~~pG~~f~pHPHrg~etvTyvl~G~i----~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~--  124 (276)
T COG1741          51 LAPGRGFPPHPHRGLETVTYVLDGEI----EHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVN--  124 (276)
T ss_pred             ccCCCcCCCCCCCCcEEEEEEEccEE----EEeecCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecC--
Confidence            3788888899 999999999999983    2222 123557889998888775  45665665 23344543333210  


Q ss_pred             CCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEeCCc----ccccccccce
Q 039441          283 TPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPK----DYQQLQEIDA  358 (539)
Q Consensus       283 ~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~----~fP~L~~l~i  358 (539)
                                       ++.. -+.+.|..           ..+.+...-|.... +..++.+...    ..|+-... +
T Consensus       125 -----------------lP~~-~k~~~P~y-----------q~~~~~~~~p~~~~-g~~~rvi~G~~~g~~~pv~~~~-~  173 (276)
T COG1741         125 -----------------LPAA-DKMIAPRY-----------QHLAFPDEIPRVEL-GLTARVIAGRDGGLSSPVRQDS-L  173 (276)
T ss_pred             -----------------Cchh-hccCCccc-----------ccccCcccCceeec-ceEEEEeccccCCcccccccce-e
Confidence                             1000 01111110           01111223333333 3334423322    34665565 7


Q ss_pred             eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441          359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII  438 (539)
Q Consensus       359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV  438 (539)
                      -...+.+.+|+-+..+ -..-.-++||++|...+  ...+                               .-.+|=++|
T Consensus       174 ~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v--~g~~-------------------------------~~~~~~l~i  219 (276)
T COG1741         174 HYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV--NGQH-------------------------------ETDGDGLAI  219 (276)
T ss_pred             EEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE--cccc-------------------------------cccccceEE
Confidence            7888889999988876 33456899999996544  2211                               022333344


Q ss_pred             CCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHc
Q 039441          439 PPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAF  490 (539)
Q Consensus       439 PaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF  490 (539)
                      ..|--..+.+..+.+..++-|.-.+ -+.+.+.-|  ++.. -+++-|+.||
T Consensus       220 ~~g~~i~l~a~~~~~a~vLL~~g~P-~~~~~~~~g--~fV~-~s~e~i~~a~  267 (276)
T COG1741         220 LDGDEITLVADSPAGARVLLLDGPP-LGEPIVIYG--PFVM-NSKEEIEQAK  267 (276)
T ss_pred             ecCCeEEEEecCCCCeEEEEEcCCC-CCCceeEEC--Cccc-CCHHHHHHHH
Confidence            4455445566556667777766554 333333333  2222 3566666665

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=95.57  E-value=0.077  Score=50.03  Aligned_cols=75  Identities=19%  Similarity=0.308  Sum_probs=56.2

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+...+|+++|  -.+|...+-|++-||+.|+--|.+  .|  .+..-.+||||+||.|.-.=+--.+.   .+++.+.
T Consensus        98 ~~l~aG~m~~~~--~tf~wtl~yDe~d~VlEGrL~V~~--~g--~tv~a~aGDvifiPKgssIefst~ge---a~flyvt  168 (176)
T COG4766          98 SRLGAGLMEMKN--TTFPWTLNYDEIDYVLEGRLHVRI--DG--RTVIAGAGDVIFIPKGSSIEFSTTGE---AKFLYVT  168 (176)
T ss_pred             Cccccceeeecc--ccCcceecccceeEEEeeeEEEEE--cC--CeEecCCCcEEEecCCCeEEEeccce---EEEEEEE
Confidence            345567888899  456888999999999999865543  44  24456899999999999877776653   6677777


Q ss_pred             ccCC
Q 039441          279 QPVN  282 (539)
Q Consensus       279 d~~n  282 (539)
                      -|.|
T Consensus       169 yPan  172 (176)
T COG4766         169 YPAN  172 (176)
T ss_pred             cccc
Confidence            6654

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=95.50  E-value=0.77  Score=47.17  Aligned_cols=76  Identities=21%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEe-----CC-CceeeecCCCcEEEeCCCCeEEEEecCCCc
Q 039441          197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVS-----HE-RRESFNMEHGDVISVPAGTTYYLSNQDNVD  270 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~-----pg-~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e  270 (539)
                      |.....+.+|+|+++.-+.-.--+-...+.++.|+++|++=.     -+ ....|+ ...|.++||.|+..-|.+.++  
T Consensus        23 g~~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~-~~~d~lYvp~g~~~~i~a~~~--   99 (261)
T PF04962_consen   23 GWMYMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFD-GPPDALYVPRGTKVVIFASTD--   99 (261)
T ss_dssp             CCCCBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGG-S--EEEEE-TT--EEEEESST--
T ss_pred             CccccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccC-CCCcEEEeCCCCeEEEEEcCC--
Confidence            444555566777887655444333445556789999999811     01 122344 566999999999999999653  


Q ss_pred             eEEEEE
Q 039441          271 RLHVAK  276 (539)
Q Consensus       271 ~L~iv~  276 (539)
                       ++|+.
T Consensus       100 -ae~~~  104 (261)
T PF04962_consen  100 -AEFAV  104 (261)
T ss_dssp             -EEEEE
T ss_pred             -CEEEE
Confidence             54443

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PLN02288 mannose-6-phosphate isomerase

Probab=95.39  E-value=0.11  Score=56.20  Aligned_cols=60  Identities=25%  Similarity=0.413  Sum_probs=41.5

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +.++..+.|.+|.-.. ....+...|++|++|++.+..  ..+                         ..+..|++|+++
T Consensus       333 eF~v~~~~l~~~~~~~-~~~~~gp~Illv~~G~~~i~~--~~~-------------------------~~~~~l~~G~~~  384 (394)
T PLN02288        333 EFEVDHCDVPPGASVV-FPAVPGPSVFLVIEGEGVLST--GSS-------------------------EDGTAAKRGDVF  384 (394)
T ss_pred             ceEEEEEEeCCCCeEe-ecCCCCCEEEEEEcCEEEEec--CCc-------------------------cceEEEeceeEE
Confidence            4677778887775321 222468899999999998732  111                         123569999999


Q ss_pred             EeCCCCeE
Q 039441          437 IIPPGHPI  444 (539)
Q Consensus       437 vVPaG~~h  444 (539)
                      +||++...
T Consensus       385 fv~a~~~~  392 (394)
T PLN02288        385 FVPAGTEI  392 (394)
T ss_pred             EEeCCCcc
Confidence            99998754

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=95.34  E-value=0.02  Score=54.46  Aligned_cols=57  Identities=23%  Similarity=0.391  Sum_probs=48.9

Q ss_pred             CeeecccccCCCcEEEEEeceEEEEEEeCCCcee-eecCCCcEEEeCCCCeEEEEecC
Q 039441          211 STLVVPHHSDAETILVLLKGKGVITLVSHERRES-FNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       211 ~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~-~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      ..|+.+|-+.-++|-||+.|.|-.-+-+.+...+ --|+.||+|.||||+-|-+.-+.
T Consensus        83 k~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~  140 (179)
T KOG2107|consen   83 KSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP  140 (179)
T ss_pred             HHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence            3578999999999999999999999887776665 46899999999999999877654

>PF12852 Cupin_6: Cupin

Probab=94.97  E-value=0.066  Score=51.17  Aligned_cols=57  Identities=26%  Similarity=0.461  Sum_probs=44.9

Q ss_pred             CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      .|-++..|.-. ...+.||++|++.+.+  ++......|++||++.+|.|.+|++....+
T Consensus        24 ~~W~~~~~~~~-~~~fh~V~~G~~~l~~--~~~~~~~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   24 GPWGLRFPGSP-GASFHVVLRGSCWLRV--PGGGEPIRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             CCcEEeccCCC-ceEEEEEECCeEEEEE--cCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence            44556555543 4788899999999883  554578999999999999999999976653

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=94.89  E-value=0.22  Score=48.81  Aligned_cols=59  Identities=20%  Similarity=0.335  Sum_probs=43.2

Q ss_pred             eCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc------------------------------------eeeecCCCc
Q 039441          208 ANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR------------------------------------ESFNMEHGD  251 (539)
Q Consensus       208 l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~------------------------------------~~~~v~~GD  251 (539)
                      -.+++..-.||-..+-|+-++.|+=++.++.|...                                    ....|++||
T Consensus       138 g~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD  217 (251)
T PF13621_consen  138 GPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGD  217 (251)
T ss_dssp             E-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-
T ss_pred             eCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCe
Confidence            34566666676567889999999999999998731                                    014699999


Q ss_pred             EEEeCCCCeEEEEec
Q 039441          252 VISVPAGTTYYLSNQ  266 (539)
Q Consensus       252 V~~iPaG~~h~i~N~  266 (539)
                      |++||+|..|++.|.
T Consensus       218 ~LfiP~gWwH~V~~~  232 (251)
T PF13621_consen  218 VLFIPPGWWHQVENL  232 (251)
T ss_dssp             EEEE-TT-EEEEEES
T ss_pred             EEEECCCCeEEEEEc
Confidence            999999999999999

...

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=94.76  E-value=0.24  Score=52.02  Aligned_cols=87  Identities=26%  Similarity=0.337  Sum_probs=48.2

Q ss_pred             eEEEEEEcCCc--eecceecCCCCEEEEEEeceEEEEEecCCCCc---cchhhhhhhhHHHHHHhhhcceeeEEeeeCCC
Q 039441          359 GVTYVEINQGG--MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR---WSQESQREQQEEEEEEESSRELQKISANLSPG  433 (539)
Q Consensus       359 sva~v~L~pGg--m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~---~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G  433 (539)
                      ..+-+-++|+|  =+.|||- .-+.+++=+.|+=+..|-.+....   .+...- ..     .+...   -..+..|++|
T Consensus       114 ~~~n~Y~tp~g~~g~~~H~D-~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~-~~-----~~~~~---~~~~~~L~pG  183 (319)
T PF08007_consen  114 VGANAYLTPPGSQGFGPHYD-DHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPF-KQ-----LEEFE---PVEEVVLEPG  183 (319)
T ss_dssp             EEEEEEEETSSBEESECEE--SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--T-TT-----CG--S---TSEEEEE-TT
T ss_pred             cceEEEecCCCCCCccCEEC-CcccEEEECCceeEEEECCCCcccccccCCCCc-cc-----cccCc---eeEEEEECCC
Confidence            34556688888  8899997 456666667787777777632211   000000 00     00000   1346789999


Q ss_pred             cEEEeCCCCeEEEEcCCCCcEEE
Q 039441          434 VVFIIPPGHPIALVASPNEKLLT  456 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~gne~l~~  456 (539)
                      ||++||+|++|...+.+ ..+.+
T Consensus       184 D~LYlPrG~~H~~~~~~-~S~hl  205 (319)
T PF08007_consen  184 DVLYLPRGWWHQAVTTD-PSLHL  205 (319)
T ss_dssp             -EEEE-TT-EEEEEESS--EEEE
T ss_pred             CEEEECCCccCCCCCCC-CceEE
Confidence            99999999999999986 44444

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=94.56  E-value=0.53  Score=45.56  Aligned_cols=77  Identities=23%  Similarity=0.252  Sum_probs=58.2

Q ss_pred             ceeEEEEEEcCCceecceecCCC-CEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeE-EeeeCCC-
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKA-TTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKI-SANLSPG-  433 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA-~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~-~~~L~~G-  433 (539)
                      ++|++.    +|-++..|||..- .+++.|+.|++..-.|+-.-.                   ++.|.+. ...|.+- 
T Consensus        48 n~S~S~----~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~-------------------SpTyg~~~~~~ls~~N  104 (173)
T COG1898          48 NHSFSY----PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKD-------------------SPTYGKWVGVVLSAEN  104 (173)
T ss_pred             eEEEec----CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCC-------------------CCCcceEEEEEecCCC
Confidence            455554    9999999999888 999999999999999987532                   2233332 3345544 


Q ss_pred             -cEEEeCCCCeEEEEcCCCCcEEEE
Q 039441          434 -VVFIIPPGHPIALVASPNEKLLTV  457 (539)
Q Consensus       434 -DV~vVPaG~~h~i~n~gne~l~~v  457 (539)
                       .++.||.|++|=+.|.++.. +++
T Consensus       105 ~~~l~IP~G~AHGf~~L~d~~-~~~  128 (173)
T COG1898         105 KRQLYIPPGFAHGFQVLSDDA-EVV  128 (173)
T ss_pred             ceEEEeCCcccceeEEccCce-EEE
Confidence             79999999999999997765 444

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=94.54  E-value=0.31  Score=44.18  Aligned_cols=62  Identities=15%  Similarity=0.189  Sum_probs=45.8

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+....-.-+||...   |+-..+|..|+|+|.+.++  ..+|                        +.  -.|++||+|
T Consensus        44 ~~~~GiWe~TpG~~r---~~y~~~E~chil~G~v~~T--~d~G------------------------e~--v~~~aGD~~   92 (116)
T COG3450          44 QVETGIWECTPGKFR---VTYDEDEFCHILEGRVEVT--PDGG------------------------EP--VEVRAGDSF   92 (116)
T ss_pred             CeeEeEEEecCccce---EEcccceEEEEEeeEEEEE--CCCC------------------------eE--EEEcCCCEE
Confidence            356667778888873   5556799999999988663  3333                        23  369999999


Q ss_pred             EeCCCCeEEEEcC
Q 039441          437 IIPPGHPIALVAS  449 (539)
Q Consensus       437 vVPaG~~h~i~n~  449 (539)
                      |||+|+.-.+.-.
T Consensus        93 ~~~~G~~g~W~V~  105 (116)
T COG3450          93 VFPAGFKGTWEVL  105 (116)
T ss_pred             EECCCCeEEEEEe
Confidence            9999998776543

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=94.49  E-value=0.17  Score=47.75  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=49.9

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+++.+..+++-.+   -|..+-+++.||++|+..|.+-.-                           ++  .-.+|||+
T Consensus        99 ~l~aG~m~~~~~tf---~wtl~yDe~d~VlEGrL~V~~~g~---------------------------tv--~a~aGDvi  146 (176)
T COG4766          99 RLGAGLMEMKNTTF---PWTLNYDEIDYVLEGRLHVRIDGR---------------------------TV--IAGAGDVI  146 (176)
T ss_pred             ccccceeeeccccC---cceecccceeEEEeeeEEEEEcCC---------------------------eE--ecCCCcEE
Confidence            47788888888332   488899999999999887644322                           23  35899999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEE
Q 039441          437 IIPPGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~  458 (539)
                      +||.|.-+-+--.+.  ..|+-
T Consensus       147 fiPKgssIefst~ge--a~fly  166 (176)
T COG4766         147 FIPKGSSIEFSTTGE--AKFLY  166 (176)
T ss_pred             EecCCCeEEEeccce--EEEEE
Confidence            999999988766543  44443

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.43  E-value=0.075  Score=55.17  Aligned_cols=70  Identities=16%  Similarity=0.200  Sum_probs=61.8

Q ss_pred             EEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441          360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP  439 (539)
Q Consensus       360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP  439 (539)
                      ++.--|-||-+...|=| +-..+-||++|+|-.++|+-.                          +  ..+++||+++.|
T Consensus        94 AglQlilPGEvApsHrH-sqsAlRFvveG~Ga~T~VdGe--------------------------r--~~M~~GDfilTP  144 (351)
T COG3435          94 AGLQLILPGEVAPSHRH-NQSALRFVVEGKGAYTVVDGE--------------------------R--TPMEAGDFILTP  144 (351)
T ss_pred             hhhheecCcccCCcccc-cccceEEEEeccceeEeecCc--------------------------e--eeccCCCEEEcc
Confidence            56667889999999999 778999999999999999874                          2  358999999999


Q ss_pred             CCCeEEEEcCCCCcEEEEE
Q 039441          440 PGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~  458 (539)
                      ++..|.--|.|++++.|+-
T Consensus       145 ~w~wHdHgn~g~eP~iWlD  163 (351)
T COG3435         145 AWTWHDHGNEGTEPCIWLD  163 (351)
T ss_pred             CceeccCCCCCCCceEEEc
Confidence            9999999999999999983

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=94.39  E-value=5.5  Score=41.36  Aligned_cols=186  Identities=13%  Similarity=0.125  Sum_probs=99.2

Q ss_pred             eeecccccCCCcEEE-EEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC-CceEEEEEEeccCCCCCCcee
Q 039441          212 TLVVPHHSDAETILV-LLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN-VDRLHVAKLLQPVNTPGQFRV  289 (539)
Q Consensus       212 ~l~lPh~~dA~~~~y-V~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~-~e~L~iv~l~d~~n~pg~f~~  289 (539)
                      .|-.+.+...-|+++ ++.|+|+|++  .|  +++.+...|.++||.|+..++....+ ..+++|+..--|...  .|  
T Consensus        64 ~~~~~~fl~rrE~giV~lgG~~~V~v--dG--~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAPA~~--~~--  135 (276)
T PRK00924         64 QLGVSYFLERRELGIINIGGAGTVTV--DG--ETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAPAHT--TY--  135 (276)
T ss_pred             cccceeecCCcEEEEEEccceEEEEE--CC--EEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccccCC--CC--
Confidence            344555666676655 5677787775  33  67889999999999999877774322 345655554333211  00  


Q ss_pred             ccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEe-CCcccccccccceeEEEEEEcCC
Q 039441          290 QQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEA-TPKDYQQLQEIDAGVTYVEINQG  368 (539)
Q Consensus       290 ~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~-~~~~fP~L~~l~isva~v~L~pG  368 (539)
                            -...++.++.....       .+.             ...+| --.|+.+ .+...|.   -.+-|....|+||
T Consensus       136 ------PtrlI~~~d~~~~~-------rG~-------------~~~sN-~R~I~~il~p~~~~s---~qLlmG~tvltPG  185 (276)
T PRK00924        136 ------PTKKITIADASPVT-------LGD-------------LETSN-RRTINKYIHPDVLET---CQLVMGLTELEPG  185 (276)
T ss_pred             ------CCEEECHHHCCeEe-------ccC-------------CCCCC-cEEEEEecCCCCCcc---ccEEEEEEEEcCC
Confidence                  01111111111100       000             00011 1112222 2333333   3577888889999


Q ss_pred             c---eecceecCCCCEEEEEEeceEEEEEecC-CCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeE
Q 039441          369 G---MMVPHYNSKATTIVLVVEGRGRFEMGGP-LSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI  444 (539)
Q Consensus       369 g---m~~PHwhpnA~ei~yV~~G~g~v~vV~p-~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h  444 (539)
                      |   -++||-|.+-.|+.|...=.-- +.|.. .|.-        .             ..--.-|+-+|++++|.=..|
T Consensus       186 g~WSSyPPHkHDrr~E~YlYf~l~~~-qrV~h~mG~p--------d-------------ETrh~~v~n~~aVisP~wsih  243 (276)
T PRK00924        186 SVWNTMPCHTHDRRMEVYFYFDMPED-ARVFHFMGEP--------Q-------------ETRHIVVHNEQAVISPSWSIH  243 (276)
T ss_pred             CCCCCCCCccCCCCcceEEEEEcCCC-ceEEecCCCc--------c-------------ceeeEEEECCCEEECCCccee
Confidence            9   4699999866676554331111 11221 1110        0             111135899999999998888


Q ss_pred             EEEcCCCCcEEEE
Q 039441          445 ALVASPNEKLLTV  457 (539)
Q Consensus       445 ~i~n~gne~l~~v  457 (539)
                      .-..++|=.+.|-
T Consensus       244 ~g~gt~~y~fiw~  256 (276)
T PRK00924        244 SGVGTSNYTFIWG  256 (276)
T ss_pred             cCcCccccEEEEE
Confidence            8666655444443

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=93.79  E-value=0.1  Score=49.86  Aligned_cols=75  Identities=19%  Similarity=0.369  Sum_probs=56.0

Q ss_pred             EEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhc
Q 039441          342 FFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSR  421 (539)
Q Consensus       342 i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~  421 (539)
                      +.++++...|-+..          +--.++++|-| .-.+|-|++.|.|+.-|=+-+.                      
T Consensus        67 ~~~~~~e~~~nfde----------Kvk~FfEEhlh-~deeiR~il~GtgYfDVrd~dd----------------------  113 (179)
T KOG2107|consen   67 ICTVCPETLPNFDE----------KVKSFFEEHLH-EDEEIRYILEGTGYFDVRDKDD----------------------  113 (179)
T ss_pred             EEEEchhhcccHHH----------HHHHHHHHhcC-chhheEEEeecceEEeeccCCC----------------------
Confidence            35566555555442          11257899999 5679999999999998887764                      


Q ss_pred             ceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441          422 ELQKISANLSPGVVFIIPPGHPIALVASPN  451 (539)
Q Consensus       422 ~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn  451 (539)
                        +-+.--|..||++++|+|--|-..-+.+
T Consensus       114 --~WIRi~vekGDlivlPaGiyHRFTtt~~  141 (179)
T KOG2107|consen  114 --QWIRIFVEKGDLIVLPAGIYHRFTTTPS  141 (179)
T ss_pred             --CEEEEEEecCCEEEecCcceeeeecCch
Confidence              3566679999999999999988765533

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=93.08  E-value=0.62  Score=44.24  Aligned_cols=74  Identities=14%  Similarity=0.101  Sum_probs=48.1

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeC-C-C-----ceeeecCCCcEEEeCCCCeEEEEecCCCce
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSH-E-R-----RESFNMEHGDVISVPAGTTYYLSNQDNVDR  271 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~p-g-~-----~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~  271 (539)
                      ...++.|..|.|++.+.||.-..+..     =+.-|+++.| + |     .+++..++|.+|+|-....|+..|.++.  
T Consensus        78 ~~~~~~~s~l~pg~~I~pH~d~~~~~-----lR~Hl~L~~p~~~~~~~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~--  150 (163)
T PF05118_consen   78 PLGRVRFSRLPPGTHIKPHRDPTNLR-----LRLHLPLIVPNPGCYIRVGGETRHWREGECWVFDDSFEHEVWNNGDE--  150 (163)
T ss_dssp             TCEEEEEEEEECTEEEEEE-SS-TTE-----EEEEEEEC--STTEEEEETTEEEB--CTEEEEE-TTS-EEEEESSSS--
T ss_pred             chhhEEEEEECCCCEECCeeCCCCcc-----eEEEEEEEcCCCCeEEEECCeEEEeccCcEEEEeCCEEEEEEeCCCC--
Confidence            34567788899999999996544433     2456677765 3 2     2578899999999999999999999854  


Q ss_pred             EEEEEEec
Q 039441          272 LHVAKLLQ  279 (539)
Q Consensus       272 L~iv~l~d  279 (539)
                      -+|++++|
T Consensus       151 ~Rv~L~vD  158 (163)
T PF05118_consen  151 DRVVLIVD  158 (163)
T ss_dssp             -EEEEEEE
T ss_pred             CEEEEEEE
Confidence            44555565

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=93.00  E-value=0.29  Score=49.77  Aligned_cols=49  Identities=20%  Similarity=0.357  Sum_probs=39.0

Q ss_pred             ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       216 Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      |+-++.-.+.||++|.+.+-+  .  ...+.+++||++.||+|++|.+....+
T Consensus        44 ~~~~~~~~i~~~~~G~~~~~~--~--~~~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         44 PLGMKGYILNLTIRGQGVIFN--G--GRAFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             CCCccceEEEEEEeccEEEec--C--CeeEecCCCCEEEECCCCceeeccCCC
Confidence            555566678999999998742  2  237999999999999999998877654

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=92.94  E-value=0.56  Score=44.30  Aligned_cols=69  Identities=13%  Similarity=0.097  Sum_probs=43.4

Q ss_pred             EEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCC
Q 039441          363 VEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGH  442 (539)
Q Consensus       363 v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~  442 (539)
                      +.=-|+.-.-=|++ -+.||.|-++|...+-|+..+.                         .-+-.+++||+|.+|++.
T Consensus        38 vVGGPN~R~DyHin-e~eE~FyQ~kG~m~Lkv~e~g~-------------------------~kdi~I~EGe~fLLP~~v   91 (151)
T PF06052_consen   38 VVGGPNQRTDYHIN-ETEEFFYQLKGDMCLKVVEDGK-------------------------FKDIPIREGEMFLLPANV   91 (151)
T ss_dssp             EEESSB--SSEEE--SS-EEEEEEES-EEEEEEETTE-------------------------EEEEEE-TTEEEEE-TT-
T ss_pred             EEcCCCCCCccccC-CcceEEEEEeCcEEEEEEeCCc-------------------------eEEEEeCCCcEEecCCCC
Confidence            34456666666776 5789999999999999999752                         335689999999999999


Q ss_pred             eEEEEcCCCCcEEEEE
Q 039441          443 PIALVASPNEKLLTVG  458 (539)
Q Consensus       443 ~h~i~n~gne~l~~v~  458 (539)
                      ||.=.-..+ .+-+|.
T Consensus        92 pHsP~R~~~-tiGLVi  106 (151)
T PF06052_consen   92 PHSPQRPAD-TIGLVI  106 (151)
T ss_dssp             -EEEEE-TT--EEEEE
T ss_pred             CCCCcCCCC-cEEEEE
Confidence            999766532 344443

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=91.91  E-value=1  Score=49.29  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             EeCCcccccccccceeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcc
Q 039441          344 EATPKDYQQLQEIDAGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRE  422 (539)
Q Consensus       344 ~~~~~~fP~L~~l~isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~  422 (539)
                      ++....-+.++. ||++.....+ .+| -.-.+|.++++++||.+|++++.-..-                         
T Consensus       112 ti~g~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G-------------------------  164 (424)
T PF04209_consen  112 TIAGAGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLETEFG-------------------------  164 (424)
T ss_dssp             EEEEECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEETTE-------------------------
T ss_pred             ccccCccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEecCe-------------------------
Confidence            333344444432 4555444443 345 455678889999999999998865443                         


Q ss_pred             eeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          423 LQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       423 y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                        .+  .|++||++|||+|..+.+.-.  .++..+.+.
T Consensus       165 --~L--~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E  196 (424)
T PF04209_consen  165 --RL--DVRPGDYVVIPRGTRFRVELP--GPARGYIIE  196 (424)
T ss_dssp             --EE--EE-TTEEEEE-TT--EEEE-S--SSEEEEEEE
T ss_pred             --eE--EEcCCeEEEECCeeEEEEEeC--CCceEEEEE
Confidence              33  599999999999999887666  445555444

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=91.83  E-value=1  Score=43.54  Aligned_cols=61  Identities=13%  Similarity=0.186  Sum_probs=48.8

Q ss_pred             eCCCeeecccccCCC----cEEEEEeceEEEEEEe--CCCc-----eeeecCCCc--EEEeCCCCeEEEEecCC
Q 039441          208 ANPSTLVVPHHSDAE----TILVLLKGKGVITLVS--HERR-----ESFNMEHGD--VISVPAGTTYYLSNQDN  268 (539)
Q Consensus       208 l~P~~l~lPh~~dA~----~~~yV~~G~g~i~~v~--pg~~-----~~~~v~~GD--V~~iPaG~~h~i~N~g~  268 (539)
                      ..++.++=+||..-+    ++++|+.|+....+|+  ++.+     .++.|.+++  .++||+|++|=.++..+
T Consensus        50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d  123 (176)
T PF00908_consen   50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLED  123 (176)
T ss_dssp             EETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSS
T ss_pred             ccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccC
Confidence            356999999976665    9999999999999998  3332     467776665  89999999999999974

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=91.64  E-value=1.1  Score=44.90  Aligned_cols=74  Identities=23%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             eeEEEEEEcCCc-eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          358 AGVTYVEINQGG-MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       358 isva~v~L~pGg-m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+=..+++.||| --.|--.+.|..++||++|+..+.+-..                             +..|++|+-.
T Consensus        61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-----------------------------th~l~eggya  111 (264)
T COG3257          61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-----------------------------THALREGGYA  111 (264)
T ss_pred             hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-----------------------------EEEeccCCeE
Confidence            344567887777 7778877889999999999987765332                             2579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      ++|+|..+.+.|....+..|-.|.
T Consensus       112 ylPpgs~~~~~N~~~~~~rfhw~r  135 (264)
T COG3257         112 YLPPGSGWTLRNAQKEDSRFHWIR  135 (264)
T ss_pred             EeCCCCcceEeeccCCceEEEEEe
Confidence            999999999999876666655443

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=91.62  E-value=0.7  Score=49.32  Aligned_cols=67  Identities=28%  Similarity=0.465  Sum_probs=49.6

Q ss_pred             eeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          358 AGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       358 isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ..|-.+++..|.- ..|.  .+...|..|++|+|++.--...                          .  ..|++|||+
T Consensus       333 F~v~~~~v~~g~~~~~~~--~~~~SIllv~~G~g~l~~~t~~--------------------------~--~~v~rG~V~  382 (411)
T KOG2757|consen  333 FAVLETKVPTGESYKFPG--VDGPSILLVLKGSGILKTDTDS--------------------------K--ILVNRGDVL  382 (411)
T ss_pred             eeEEEeecCCCceEEeec--CCCceEEEEEecceEEecCCCC--------------------------c--eeeccCcEE
Confidence            6677777777766 3444  3789999999999998654311                          1  358999999


Q ss_pred             EeCCCCeEEEEcCCCCcEE
Q 039441          437 IIPPGHPIALVASPNEKLL  455 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~  455 (539)
                      +||+.++..+.++ ++.+.
T Consensus       383 fI~a~~~i~~~~~-sd~~~  400 (411)
T KOG2757|consen  383 FIPANHPIHLSSS-SDPFL  400 (411)
T ss_pred             EEcCCCCceeecc-Cccee
Confidence            9999999977666 44443

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=90.97  E-value=1  Score=48.78  Aligned_cols=61  Identities=11%  Similarity=0.309  Sum_probs=46.0

Q ss_pred             cceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEE
Q 039441          198 IDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLS  264 (539)
Q Consensus       198 v~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~  264 (539)
                      +..+.+..+.+.++...++.  +...|++|++|+++|..    ...++.|++|++++|||+...+..
T Consensus       318 ~~~F~~~~~~l~~~~~~~~~--~~~~Illv~~G~~~i~~----~~~~~~l~~G~~~fipa~~~~~~~  378 (389)
T PRK15131        318 VDDFAFSLHDLSDQPTTLSQ--QSAAILFCVEGEAVLWK----GEQQLTLKPGESAFIAANESPVTV  378 (389)
T ss_pred             CCCcEEEEEEECCceEEecC--CCcEEEEEEcceEEEEe----CCeEEEECCCCEEEEeCCCccEEE
Confidence            44556666666666555554  67899999999999853    234578999999999999887666

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=90.77  E-value=1.2  Score=46.82  Aligned_cols=64  Identities=27%  Similarity=0.381  Sum_probs=35.8

Q ss_pred             CCCe--eecccccCCCcEEEEEeceEEEEEEeCCC------c-------------eeeecCCCcEEEeCCCCeEEEEecC
Q 039441          209 NPST--LVVPHHSDAETILVLLKGKGVITLVSHER------R-------------ESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       209 ~P~~--l~lPh~~dA~~~~yV~~G~g~i~~v~pg~------~-------------~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      -|.+  -+-|||=+.+-+++=+.|+=.-.+-.+..      .             ..+.|++|||+|||+|++|+-...+
T Consensus       121 tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~  200 (319)
T PF08007_consen  121 TPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD  200 (319)
T ss_dssp             ETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred             cCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence            4544  55666666555555556653333333210      0             1478999999999999999999997


Q ss_pred             CCceEEE
Q 039441          268 NVDRLHV  274 (539)
Q Consensus       268 ~~e~L~i  274 (539)
                        ..+.+
T Consensus       201 --~S~hl  205 (319)
T PF08007_consen  201 --PSLHL  205 (319)
T ss_dssp             ---EEEE
T ss_pred             --CceEE
Confidence              45655

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF12852 Cupin_6: Cupin

Probab=90.57  E-value=0.9  Score=43.36  Aligned_cols=46  Identities=20%  Similarity=0.421  Sum_probs=35.6

Q ss_pred             CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441          379 ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN  451 (539)
Q Consensus       379 A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn  451 (539)
                      ...+.+|++|.+++.+-...                         ..  ..|++||++++|.|.+|++....+
T Consensus        35 ~~~fh~V~~G~~~l~~~~~~-------------------------~~--~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   35 GASFHVVLRGSCWLRVPGGG-------------------------EP--IRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             ceEEEEEECCeEEEEEcCCC-------------------------Ce--EEecCCCEEEEcCCCCeEeCCCCC
Confidence            46788999999999854421                         12  469999999999999999965533

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=90.04  E-value=0.29  Score=42.46  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=19.4

Q ss_pred             eeecCCCcEEEeCCCCeEEEEecCC
Q 039441          244 SFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       244 ~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      ....++||+|++|+|+.|+.+|.|.
T Consensus        82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~  106 (114)
T PF02373_consen   82 RFVQKPGEFVFIPPGAYHQVFNLGD  106 (114)
T ss_dssp             EEEEETT-EEEE-TT-EEEEEESSS
T ss_pred             cceECCCCEEEECCCceEEEEeCCc
Confidence            3567899999999999999999984

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=89.97  E-value=1.8  Score=42.00  Aligned_cols=69  Identities=13%  Similarity=0.143  Sum_probs=50.7

Q ss_pred             CCCeeecccccCCC--cEEEEEeceEEEEEEeCCCce-------eeecC--CCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          209 NPSTLVVPHHSDAE--TILVLLKGKGVITLVSHERRE-------SFNME--HGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       209 ~P~~l~lPh~~dA~--~~~yV~~G~g~i~~v~pg~~~-------~~~v~--~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .||.++=.||+..+  +++.|++|++.+.+|+-..-+       ...+.  -.-++.||.|.+|-++|.+++.  .++..
T Consensus        53 ~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~--~~~y~  130 (173)
T COG1898          53 YPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA--EVVYK  130 (173)
T ss_pred             cCCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce--EEEEE
Confidence            48888888876555  899999999999999854322       23343  3478999999999999998543  44444


Q ss_pred             ec
Q 039441          278 LQ  279 (539)
Q Consensus       278 ~d  279 (539)
                      .+
T Consensus       131 ~~  132 (173)
T COG1898         131 VT  132 (173)
T ss_pred             ec
Confidence            43

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=89.79  E-value=0.69  Score=40.55  Aligned_cols=87  Identities=18%  Similarity=0.334  Sum_probs=50.0

Q ss_pred             eeeCCCee-ecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE-eccCCC
Q 039441          206 LEANPSTL-VVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL-LQPVNT  283 (539)
Q Consensus       206 l~l~P~~l-~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l-~d~~n~  283 (539)
                      ++|+|++- .+|.=.+-..++||++|.+.|+   ..   ...|.+|+++.+..|....+.+.+  +..+|+++ ..|.+.
T Consensus         4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~---~~---~~~~~~~~~~~l~~g~~i~~~a~~--~~a~~lll~GePl~E   75 (104)
T PF05726_consen    4 IKLEPGASFTLPLPPGHNAFIYVLEGSVEVG---GE---EDPLEAGQLVVLEDGDEIELTAGE--EGARFLLLGGEPLNE   75 (104)
T ss_dssp             EEE-TT-EEEEEEETT-EEEEEEEESEEEET---TT---TEEEETTEEEEE-SECEEEEEESS--SSEEEEEEEE----S
T ss_pred             EEECCCCEEEeecCCCCEEEEEEEECcEEEC---CC---cceECCCcEEEECCCceEEEEECC--CCcEEEEEEccCCCC
Confidence            34588774 4454455678999999997653   11   167999999999999999999985  33444443 344443


Q ss_pred             CCCceeccccCccEEEcChhhhh
Q 039441          284 PGQFRVQQRQQGTIKRASQEQLK  306 (539)
Q Consensus       284 pg~f~~~~q~~G~Ivrv~~eql~  306 (539)
                      |-      -..|.+|--+++.|.
T Consensus        76 pi------~~~GpFVmnt~eeI~   92 (104)
T PF05726_consen   76 PI------VQYGPFVMNTREEIE   92 (104)
T ss_dssp             --------EEETTEEESSHHHHH
T ss_pred             CE------EEECCcccCCHHHHH
Confidence            31      123455555555443

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=89.68  E-value=2.4  Score=41.12  Aligned_cols=70  Identities=10%  Similarity=0.016  Sum_probs=53.4

Q ss_pred             CCCeeeccccc---CCCcEEEEEeceEEEEEEeCC--Cc-----eeeecCC--CcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          209 NPSTLVVPHHS---DAETILVLLKGKGVITLVSHE--RR-----ESFNMEH--GDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       209 ~P~~l~lPh~~---dA~~~~yV~~G~g~i~~v~pg--~~-----~~~~v~~--GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      .+++++=.|+.   ...++++|+.|+....+|+.-  .+     ..+.|..  +-.++||+|++|=.++.+++  ..++.
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~--a~v~Y  129 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE--AEFLY  129 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC--eEEEE
Confidence            67999989975   368999999999999999854  22     2456655  66999999999999999743  44444


Q ss_pred             Eecc
Q 039441          277 LLQP  280 (539)
Q Consensus       277 l~d~  280 (539)
                      +.+.
T Consensus       130 ~~~~  133 (176)
T TIGR01221       130 KCTD  133 (176)
T ss_pred             eCCC
Confidence            4443

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=89.30  E-value=2.2  Score=46.80  Aligned_cols=62  Identities=19%  Similarity=0.316  Sum_probs=47.6

Q ss_pred             ceeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          357 DAGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       357 ~isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      |+++.....+. +| -.-.+|.++++++|+.+|.+.+.--.-                           +  -.|++||+
T Consensus       132 G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG---------------------------~--L~v~pgei  181 (438)
T PRK05341        132 GMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATELG---------------------------V--LDVEPGEI  181 (438)
T ss_pred             ccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEecc---------------------------c--eEecCCCE
Confidence            45555555554 66 566788899999999999998865443                           2  25899999


Q ss_pred             EEeCCCCeEEEEc
Q 039441          436 FIIPPGHPIALVA  448 (539)
Q Consensus       436 ~vVPaG~~h~i~n  448 (539)
                      +|||+|..+.+.-
T Consensus       182 ~VIPRG~~frv~l  194 (438)
T PRK05341        182 AVIPRGVKFRVEL  194 (438)
T ss_pred             EEEcCccEEEEec
Confidence            9999999988764

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=89.23  E-value=2.2  Score=36.87  Aligned_cols=91  Identities=16%  Similarity=0.199  Sum_probs=42.1

Q ss_pred             EEEcCCceecceecCCCC-EEEEEE---eceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441          363 VEINQGGMMVPHYNSKAT-TIVLVV---EGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII  438 (539)
Q Consensus       363 v~L~pGgm~~PHwhpnA~-ei~yV~---~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV  438 (539)
                      ....+|+...+|.|++|. .-+|.+   .+.+.+.+..+............      ..........+....++||++++
T Consensus         5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~~G~lvlF   78 (101)
T PF13759_consen    5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDN------YDQNDLNSPYYIVEPEEGDLVLF   78 (101)
T ss_dssp             EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----------TTTTCCC-SEEEE---TTEEEEE
T ss_pred             EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccc------cccCcccCceEEeCCCCCEEEEe
Confidence            456799999999999974 334444   34566677776543200000000      00001112345568899999999


Q ss_pred             CCCCeEEEEcC-CCCcEEEEEE
Q 039441          439 PPGHPIALVAS-PNEKLLTVGF  459 (539)
Q Consensus       439 PaG~~h~i~n~-gne~l~~v~F  459 (539)
                      |.-..|..... ++.+-..|+|
T Consensus        79 Ps~l~H~v~p~~~~~~Risisf  100 (101)
T PF13759_consen   79 PSWLWHGVPPNNSDEERISISF  100 (101)
T ss_dssp             ETTSEEEE----SSS-EEEEEE
T ss_pred             CCCCEEeccCcCCCCCEEEEEc
Confidence            99999998664 3445555665

>PLN02288 mannose-6-phosphate isomerase

Probab=89.22  E-value=0.87  Score=49.48  Aligned_cols=64  Identities=23%  Similarity=0.440  Sum_probs=45.8

Q ss_pred             CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEE
Q 039441          197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYY  262 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~  262 (539)
                      -+..+.|..+++.++.-....-.+.+.|++|++|+++|..  .+...+..|++|++++|||++...
T Consensus       330 P~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~--~~~~~~~~l~~G~~~fv~a~~~~~  393 (394)
T PLN02288        330 PFDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST--GSSEDGTAAKRGDVFFVPAGTEIH  393 (394)
T ss_pred             CCcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec--CCccceEEEeceeEEEEeCCCccc
Confidence            3566778878888775322222678899999999998853  222234779999999999987643

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=88.46  E-value=5.1  Score=38.53  Aligned_cols=76  Identities=13%  Similarity=0.040  Sum_probs=52.7

Q ss_pred             ceeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCc---------eeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          199 DNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERR---------ESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~---------~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      ..+-|.+|.-.||-.--+| |.++-.|+.|++|.-.-+.-.....         ....+..|.++.++.+-+|-+.|.+.
T Consensus        73 ~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~  152 (175)
T PF05995_consen   73 ERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSG  152 (175)
T ss_dssp             CT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-S
T ss_pred             CCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCC
Confidence            3456778888999999999 7789999999999988876653322         23457888889999999999999874


Q ss_pred             CceEEE
Q 039441          269 VDRLHV  274 (539)
Q Consensus       269 ~e~L~i  274 (539)
                      ++..+=
T Consensus       153 ~~~avS  158 (175)
T PF05995_consen  153 DEPAVS  158 (175)
T ss_dssp             SS-EEE
T ss_pred             CCCEEE
Confidence            555543

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=88.22  E-value=2  Score=46.04  Aligned_cols=62  Identities=23%  Similarity=0.328  Sum_probs=47.2

Q ss_pred             EEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          203 LAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       203 l~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      +.-.++.++.-..--..|.+.|+.|++|+|++..-.   ....-|.+|||++|||-....+-..+
T Consensus       335 v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t---~~~~~v~rG~V~fI~a~~~i~~~~~s  396 (411)
T KOG2757|consen  335 VLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDT---DSKILVNRGDVLFIPANHPIHLSSSS  396 (411)
T ss_pred             EEEeecCCCceEEeecCCCceEEEEEecceEEecCC---CCceeeccCcEEEEcCCCCceeeccC
Confidence            333344555444444689999999999999987633   45678999999999999999887775

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=87.78  E-value=0.86  Score=39.46  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             eEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441          425 KISANLSPGVVFIIPPGHPIALVASPN  451 (539)
Q Consensus       425 ~~~~~L~~GDV~vVPaG~~h~i~n~gn  451 (539)
                      ..+...++||+++||+|..|+..|.|+
T Consensus        80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~  106 (114)
T PF02373_consen   80 VYRFVQKPGEFVFIPPGAYHQVFNLGD  106 (114)
T ss_dssp             -EEEEEETT-EEEE-TT-EEEEEESSS
T ss_pred             cccceECCCCEEEECCCceEEEEeCCc
Confidence            445678999999999999999999976

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=87.53  E-value=3.1  Score=44.45  Aligned_cols=163  Identities=17%  Similarity=0.237  Sum_probs=85.1

Q ss_pred             cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCC----------------
Q 039441          219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVN----------------  282 (539)
Q Consensus       219 ~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n----------------  282 (539)
                      +|-++|+|+.+|+.++-...    -.-.|++||+-+||.|+.+-+.=.++ + .+++..=..+-                
T Consensus       144 ADge~Livpq~G~l~l~te~----G~l~v~pgeiavIPRG~~frve~~~~-~-~rgy~~En~ga~~~lpe~G~ig~n~la  217 (427)
T COG3508         144 ADGELLIVPQQGELRLKTEL----GVLEVEPGEIAVIPRGTTFRVELKDG-E-ARGYGCENYGAKFRLPELGPIGANGLA  217 (427)
T ss_pred             CCCCEEEEeecceEEEEEee----ceEEecCCcEEEeeCCceEEEEecCC-c-eEEEEEeeccccccccccccccccccc
Confidence            56678999999988765422    14689999999999999998887663 2 33332221110                


Q ss_pred             CCCCcee-------ccccCccEEEcChhhhhhcC----ccccccCCCCCCCCcceecCCCCCcc--cCCC--ceEE-EeC
Q 039441          283 TPGQFRV-------QQRQQGTIKRASQEQLKALS----HHASSRRRHGRGSTAPFNLLSRKPIY--NNNF--GRFF-EAT  346 (539)
Q Consensus       283 ~pg~f~~-------~~q~~G~Ivrv~~eql~~l~----~~~~~~~~~~~~~~~~fnl~~~~p~~--sn~~--G~i~-~~~  346 (539)
                      +|..|..       +.++--+|+|.- +++....    |-.-- -|.++-.+..|+|..-.|+-  +-.+  =+++ +++
T Consensus       218 npRDf~tPvar~ed~e~~~qlvvK~~-g~l~~~e~~hsPlDVV-aWhGnl~Pykydl~~f~pi~t~~~dhPdPSifTvlt  295 (427)
T COG3508         218 NPRDFKTPVARYEDSEGPTQLVVKTH-GGLWAVELDHSPLDVV-AWHGNLAPYKYDLRDFNPIGTISYDHPDPSIFTVLT  295 (427)
T ss_pred             ChhhccCceeeecccCCCeEEEEEec-CcEEEEecCCCCceeE-eecCcccceEeeeeccccccceeccCCCCceEEEEe
Confidence            1233332       222333555532 2232211    10000 12333455666776555541  1111  1222 222


Q ss_pred             C-cccccccccceeEEE--EEEcCCceecceecCC-CCEEEEEEece
Q 039441          347 P-KDYQQLQEIDAGVTY--VEINQGGMMVPHYNSK-ATTIVLVVEGR  389 (539)
Q Consensus       347 ~-~~fP~L~~l~isva~--v~L~pGgm~~PHwhpn-A~ei~yV~~G~  389 (539)
                      + .+-|.+...+.-+.-  ....++++..|.||-| ++|++..+.|.
T Consensus       296 apsd~~g~~~cdFVifpprw~~~e~tfrppwyHrN~~sEfmgli~G~  342 (427)
T COG3508         296 APSDTPGFANCDFVIFPPRWLVAEQTFRPPWYHRNDMSEFMGLISGQ  342 (427)
T ss_pred             cCCCCCCeeEEEEEecCchhcccccccCCCceecchHHHHHhHhhch
Confidence            2 233333322222211  3445799999999966 77888888775

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=87.49  E-value=0.71  Score=49.38  Aligned_cols=92  Identities=23%  Similarity=0.365  Sum_probs=54.5

Q ss_pred             cccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceE--EEEEecCCCCc--cchhhhhhhhHHHHHHhhhcceee
Q 039441          350 YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRG--RFEMGGPLSSR--WSQESQREQQEEEEEEESSRELQK  425 (539)
Q Consensus       350 fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g--~v~vV~p~gs~--~s~~~~~g~~~~~~~e~~~~~y~~  425 (539)
                      +|.-+.-++.|+  -..+||-+.|||-+. +  +|+++|.|  +-.|-.+-...  -. ..   -     ---..+-+-.
T Consensus       113 lP~wr~ddiMIS--~a~~GGgvg~H~D~Y-D--VfliQg~G~RRW~v~~~~~~~~~~~-~~---d-----~~~~~~f~~~  178 (383)
T COG2850         113 LPDWRIDDIMIS--FAAPGGGVGPHFDQY-D--VFLIQGQGRRRWRVGKKCNMSTLCP-HP---D-----LLILAPFEPD  178 (383)
T ss_pred             CccccccceEEE--EecCCCccCccccch-h--eeEEeecccceeecCCcccccCcCC-Cc---c-----hhhcCCCCch
Confidence            466565567777  678999999999633 2  56666655  44443331111  00 00   0     0000112234


Q ss_pred             EEeeeCCCcEEEeCCCCeEEEEcCCCCcEEE
Q 039441          426 ISANLSPGVVFIIPPGHPIALVASPNEKLLT  456 (539)
Q Consensus       426 ~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~  456 (539)
                      ++..|.+|||++||+|++|+-++- ++-+.+
T Consensus       179 ~d~vlepGDiLYiPp~~~H~gvae-~dc~ty  208 (383)
T COG2850         179 IDEVLEPGDILYIPPGFPHYGVAE-DDCMTY  208 (383)
T ss_pred             hhhhcCCCceeecCCCCCcCCccc-ccccce
Confidence            556789999999999999999997 333443

>PLN02658 homogentisate 1,2-dioxygenase

Probab=87.48  E-value=3.5  Score=45.24  Aligned_cols=71  Identities=18%  Similarity=0.245  Sum_probs=50.3

Q ss_pred             ceeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          357 DAGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       357 ~isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      ||++.....+. +| -.-.+|.++++++|+-+|.+.+.--.-                           ++  .|++||+
T Consensus       125 G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG---------------------------~L--~v~pgei  174 (435)
T PLN02658        125 GYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTELG---------------------------KL--QVSPGEI  174 (435)
T ss_pred             CcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEecc---------------------------ce--EecCCCE
Confidence            55555555544 56 455789999999999999998865443                           22  5899999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEE
Q 039441          436 FIIPPGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~  458 (539)
                      +|||+|..+.+.=. +.+...+.
T Consensus       175 ~VIPRG~~frv~l~-~gp~rgyv  196 (435)
T PLN02658        175 VVIPRGFRFAVDLP-DGPSRGYV  196 (435)
T ss_pred             EEecCccEEEEecC-CCCeeEEE
Confidence            99999998876532 23444433

>TIGR02466 conserved hypothetical protein

Probab=87.46  E-value=2.6  Score=41.75  Aligned_cols=95  Identities=15%  Similarity=0.196  Sum_probs=53.0

Q ss_pred             EEEEEEcCCceecceecCCC--CEEEEEE--eceEEEEEecCCCCcc-chhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          360 VTYVEINQGGMMVPHYNSKA--TTIVLVV--EGRGRFEMGGPLSSRW-SQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       360 va~v~L~pGgm~~PHwhpnA--~ei~yV~--~G~g~v~vV~p~gs~~-s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      +=.+.+.+|+...+|.||++  .-+.||.  .|.|.+.+..|..... .........    .....   ..+...-++||
T Consensus        98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~----~~~~~---~~~~v~P~~G~  170 (201)
T TIGR02466        98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNA----KRAVQ---RFVYVPPQEGR  170 (201)
T ss_pred             EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCcc----ccccC---ccEEECCCCCe
Confidence            44556789999999999997  3445554  3344555555432100 000000000    00000   12224569999


Q ss_pred             EEEeCCCCeEEEEcC-CCCcEEEEEEee
Q 039441          435 VFIIPPGHPIALVAS-PNEKLLTVGFSL  461 (539)
Q Consensus       435 V~vVPaG~~h~i~n~-gne~l~~v~F~~  461 (539)
                      ++++|.-..|..... +++.-..|+|..
T Consensus       171 lvlFPS~L~H~v~p~~~~~~RISiSFNl  198 (201)
T TIGR02466       171 VLLFESWLRHEVPPNESEEERISVSFNY  198 (201)
T ss_pred             EEEECCCCceecCCCCCCCCEEEEEEee
Confidence            999999999998664 445566677753

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=86.96  E-value=5.4  Score=34.02  Aligned_cols=63  Identities=17%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             CCCeeecccccCCCcEEE--EEeceEEEEEEeCCCc---eeeecCCCcEEEeCCCCeEEEEecCCCce
Q 039441          209 NPSTLVVPHHSDAETILV--LLKGKGVITLVSHERR---ESFNMEHGDVISVPAGTTYYLSNQDNVDR  271 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~y--V~~G~g~i~~v~pg~~---~~~~v~~GDV~~iPaG~~h~i~N~g~~e~  271 (539)
                      =|.+|+-.|...+.-|+-  |++|+......++.+.   +..-+.+|+...|++.+.|.|.-.+++-.
T Consensus        11 lP~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~   78 (82)
T PF09313_consen   11 LPAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLR   78 (82)
T ss_dssp             S-GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-E
T ss_pred             CcHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEE
Confidence            688999999999998876  8999999999988653   35678999999999999999998875433

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=86.90  E-value=3.8  Score=35.84  Aligned_cols=68  Identities=18%  Similarity=0.270  Sum_probs=47.5

Q ss_pred             EEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCC
Q 039441          361 TYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPP  440 (539)
Q Consensus       361 a~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPa  440 (539)
                      .-+.|+||+-+.....+.-+-++||++|.+.+   ...                          .  ..|.+|+++++..
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v---~~~--------------------------~--~~~~~~~~~~l~~   50 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV---GGE--------------------------E--DPLEAGQLVVLED   50 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE---TTT--------------------------T--EEEETTEEEEE-S
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEEE---CCC--------------------------c--ceECCCcEEEECC
Confidence            34788999987655566677999999999755   221                          1  3589999999998


Q ss_pred             CCeEEEEcCCCCcEEEEEEe
Q 039441          441 GHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       441 G~~h~i~n~gne~l~~v~F~  460 (539)
                      |-...+.+.+ ++..+|.|.
T Consensus        51 g~~i~~~a~~-~~a~~lll~   69 (104)
T PF05726_consen   51 GDEIELTAGE-EGARFLLLG   69 (104)
T ss_dssp             ECEEEEEESS-SSEEEEEEE
T ss_pred             CceEEEEECC-CCcEEEEEE
Confidence            8888888874 667776554

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=86.05  E-value=4.2  Score=38.62  Aligned_cols=78  Identities=10%  Similarity=0.161  Sum_probs=46.4

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecC-CCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP-LSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p-~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ..|.+..|.||+...||.-+....+      +..+.++.| .+..                   ....-.+...++|.++
T Consensus        80 ~~~~~s~l~pg~~I~pH~d~~~~~l------R~Hl~L~~p~~~~~-------------------~~v~~~~~~w~~G~~~  134 (163)
T PF05118_consen   80 GRVRFSRLPPGTHIKPHRDPTNLRL------RLHLPLIVPNPGCY-------------------IRVGGETRHWREGECW  134 (163)
T ss_dssp             EEEEEEEEECTEEEEEE-SS-TTEE------EEEEEEC--STTEE-------------------EEETTEEEB--CTEEE
T ss_pred             hhEEEEEECCCCEECCeeCCCCcce------EEEEEEEcCCCCeE-------------------EEECCeEEEeccCcEE
Confidence            3478888999999999997654432      334455554 2111                   0000123568999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      ++=..++|...|.+++.-.+|.+.
T Consensus       135 ~fD~s~~H~~~N~~~~~Rv~L~vD  158 (163)
T PF05118_consen  135 VFDDSFEHEVWNNGDEDRVVLIVD  158 (163)
T ss_dssp             EE-TTS-EEEEESSSS-EEEEEEE
T ss_pred             EEeCCEEEEEEeCCCCCEEEEEEE
Confidence            999999999999988776666554

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=85.79  E-value=4.5  Score=44.30  Aligned_cols=64  Identities=14%  Similarity=0.192  Sum_probs=48.5

Q ss_pred             ceeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          357 DAGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       357 ~isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      |+++.....+. +| -.-.+|.++++++|+-+|.+.+.--.-                           +  -.|++||+
T Consensus       126 G~ai~iy~~~~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG---------------------------~--L~v~pgei  175 (429)
T TIGR01015       126 GLAIHIYLCNA-SMENRAFYNADGDFLIVPQQGALLITTEFG---------------------------R--LLVEPNEI  175 (429)
T ss_pred             CceEEEEeCCC-CcccceeeccCCCEEEEEEeCcEEEEEecc---------------------------c--eEecCCCE
Confidence            45555555544 66 666788899999999999998865443                           2  25899999


Q ss_pred             EEeCCCCeEEEEcCC
Q 039441          436 FIIPPGHPIALVASP  450 (539)
Q Consensus       436 ~vVPaG~~h~i~n~g  450 (539)
                      +|||+|..+.+.-.+
T Consensus       176 ~VIPRG~~frv~l~g  190 (429)
T TIGR01015       176 CVIPRGVRFRVTVLE  190 (429)
T ss_pred             EEecCccEEEEeeCC
Confidence            999999998876543

Missing in human disease alkaptonuria.

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=84.91  E-value=28  Score=32.49  Aligned_cols=86  Identities=16%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEec-eEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCC--
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEG-RGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG--  433 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G-~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G--  433 (539)
                      .+++.+.-|+++.+..-|=. ++++|-+...| ...+-++.|+++-        .            -.++-.++.+|  
T Consensus        40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~--------~------------~~~LG~d~~~g~~   98 (139)
T PF06172_consen   40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSY--------E------------TVVLGPDLAAGER   98 (139)
T ss_dssp             S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTE--------E------------EEEESSTTCTTEB
T ss_pred             cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCe--------E------------EEEECCCCCCCce
Confidence            36666777999999876665 89999999998 6889999998742        0            01333445566  


Q ss_pred             cEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          434 VVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      =.++||+|....-.-.+..+..+|+-.+.+
T Consensus        99 ~q~vVp~G~W~aa~l~~~~~y~Lvsc~VaP  128 (139)
T PF06172_consen   99 PQVVVPAGTWQAAELEPEGDYSLVSCTVAP  128 (139)
T ss_dssp             SEEEE-TTSEEEEEECESSSEEEEEEEESS
T ss_pred             EEEEECCCEEEEccccCCCCEEEEEEEEcC
Confidence            368999999888643445567777655554

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=84.27  E-value=3.6  Score=41.78  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=34.4

Q ss_pred             CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441          378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN  451 (539)
Q Consensus       378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn  451 (539)
                      ++..|.||++|.|.+. + .+                         +  ...+++||+++||+|.+|......+
T Consensus        48 ~~~~i~~~~~G~~~~~-~-~~-------------------------~--~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         48 KGYILNLTIRGQGVIF-N-GG-------------------------R--AFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             cceEEEEEEeccEEEe-c-CC-------------------------e--eEecCCCCEEEECCCCceeeccCCC
Confidence            4567899999999874 2 21                         1  2579999999999999998766433

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=83.78  E-value=1.9  Score=43.00  Aligned_cols=59  Identities=19%  Similarity=0.315  Sum_probs=49.0

Q ss_pred             CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      -||.=--=|--..++|+|-.+|..++-+|..+..+-.-|++||++.+||-++|+=+--.
T Consensus        41 GPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFa   99 (279)
T KOG3995|consen   41 GPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFA   99 (279)
T ss_pred             CCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhc
Confidence            45444334555789999999999999999999999889999999999999999866443

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.55  E-value=0.77  Score=50.55  Aligned_cols=79  Identities=25%  Similarity=0.318  Sum_probs=50.3

Q ss_pred             EEEEEcCCce--ecceecCCCCEEEEEEeceEEEEEecCCCCcc---chhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          361 TYVEINQGGM--MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW---SQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       361 a~v~L~pGgm--~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~---s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      +-+-|+|-+-  ++|||. +-...++=++|+-+.-+..|..+..   .-++.+=.     ++..  .--++.+-|++||+
T Consensus       319 aNvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~-----eedl--gePV~e~vle~GDl  390 (629)
T KOG3706|consen  319 ANVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFT-----EEDL--GEPVHEFVLEPGDL  390 (629)
T ss_pred             cceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhhhhccCCCCC-----hhHh--CCchHHhhcCCCcE
Confidence            3455555433  599997 7777777889999999999876540   00000000     0000  01356678999999


Q ss_pred             EEeCCCCeEEEE
Q 039441          436 FIIPPGHPIALV  447 (539)
Q Consensus       436 ~vVPaG~~h~i~  447 (539)
                      ++||+|+.|--.
T Consensus       391 lYfPRG~IHQA~  402 (629)
T KOG3706|consen  391 LYFPRGTIHQAD  402 (629)
T ss_pred             EEecCcceeecc
Confidence            999999999743

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.53  E-value=0.8  Score=50.41  Aligned_cols=54  Identities=24%  Similarity=0.356  Sum_probs=43.0

Q ss_pred             eecccccCCCcEEEEEeceEEEEEEeCCCce---------------------eeecCCCcEEEeCCCCeEEEEec
Q 039441          213 LVVPHHSDAETILVLLKGKGVITLVSHERRE---------------------SFNMEHGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       213 l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~---------------------~~~v~~GDV~~iPaG~~h~i~N~  266 (539)
                      -+-|||-|-+..+.-+.|+-.--+-.|..+.                     .+-|++||++|||.|++|--.-.
T Consensus       330 GfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~  404 (629)
T KOG3706|consen  330 GFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTP  404 (629)
T ss_pred             CCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeecccc
Confidence            4579999999998899998877777776541                     14589999999999999955443

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=81.86  E-value=5.5  Score=41.51  Aligned_cols=61  Identities=15%  Similarity=0.275  Sum_probs=43.5

Q ss_pred             cceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEE
Q 039441          198 IDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLS  264 (539)
Q Consensus       198 v~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~  264 (539)
                      ...+.+..+++.... .+. -.+...+++|+.|+++|..  .  ..+..|++|++++|||++..+..
T Consensus       232 ~~~F~~~~~~~~~~~-~~~-~~~~~~il~v~~G~~~i~~--~--~~~~~l~~G~~~~ipa~~~~~~i  292 (302)
T TIGR00218       232 TEYFSVYKWDISGKA-EFI-QQQSALILSVLEGSGRIKS--G--GKTLPLKKGESFFIPAHLGPFTI  292 (302)
T ss_pred             CCCeEEEEEEeCCce-eec-cCCCcEEEEEEcceEEEEE--C--CEEEEEecccEEEEccCCccEEE
Confidence            455666666666542 222 2457889999999999864  2  25688999999999999965555

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=81.50  E-value=12  Score=32.80  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=50.6

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      -......|.||-   -++++.+.|++=|+.|...|.+-....                           -..+.+|+.|.
T Consensus        23 ~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~e---------------------------w~~~~aGesF~   72 (94)
T PF06865_consen   23 SKKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDE---------------------------WQTYSAGESFE   72 (94)
T ss_dssp             EEEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS----------------------------EEEETT-EEE
T ss_pred             CcceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCcc---------------------------cEEeCCCCeEE
Confidence            455666777886   378899999999999999887755431                           14579999999


Q ss_pred             eCCCCeEEEEcCCCCcEEEEEEe
Q 039441          438 IPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       438 VPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      ||++.-+-+...  +...++|..
T Consensus        73 VpanssF~v~v~--~~~~Y~C~y   93 (94)
T PF06865_consen   73 VPANSSFDVKVK--EPTAYLCSY   93 (94)
T ss_dssp             E-TTEEEEEEES--S-EEEEEEE
T ss_pred             ECCCCeEEEEEC--cceeeEEEe
Confidence            999999988775  568888743

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=81.25  E-value=5.3  Score=40.65  Aligned_cols=66  Identities=18%  Similarity=0.247  Sum_probs=44.7

Q ss_pred             cceeeEEEeeeCCCeeec-ccc---cCC--CcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          198 IDNYRLAILEANPSTLVV-PHH---SDA--ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       198 v~~~Rl~il~l~P~~l~l-Ph~---~dA--~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      +...+|+-+...|..+.- +.+   .+.  -.+.|++.|.+.+..  .  ...+.|.+||++.+|++.+|.+.-.+
T Consensus        42 ~~~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~--~--g~~~~l~~G~~~l~~~~~p~~~~~~~  113 (302)
T PRK09685         42 AGGLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ--D--DRQVQLAAGDITLIDASRPCSIYPQG  113 (302)
T ss_pred             eCCEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE--C--CeEEEEcCCCEEEEECCCCcEeecCC
Confidence            445667777778875543 332   222  235567788877654  2  24688999999999999999887654

>PF14861 Antimicrobial21: Plant antimicrobial peptide

Probab=80.77  E-value=1.9  Score=30.33  Aligned_cols=25  Identities=32%  Similarity=0.785  Sum_probs=19.6

Q ss_pred             HHHHHHhhhhccchHhHHHHHHHHHH
Q 039441          106 EQCLKQCERRESGEQQQQQCKSWCEK  131 (539)
Q Consensus       106 ~~c~~~c~~~~~~~~~~~~c~~~c~~  131 (539)
                      ..|..+|+.-. -+-.|++||+.|..
T Consensus         5 ~~C~k~Cqhh~-D~~~kq~Cv~~C~r   29 (31)
T PF14861_consen    5 DRCRKQCQHHR-DPWRKQQCVQDCRR   29 (31)
T ss_pred             hHHHHHhhccc-CHHHHHHHHHHHHh
Confidence            47999996655 34589999999975

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=80.64  E-value=4.7  Score=32.42  Aligned_cols=48  Identities=15%  Similarity=0.377  Sum_probs=40.3

Q ss_pred             eeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce--eeecCCCcEEE
Q 039441          207 EANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE--SFNMEHGDVIS  254 (539)
Q Consensus       207 ~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~--~~~v~~GDV~~  254 (539)
                      +..++..+.......+.++||++|...+.....+...  ...+.+||++-
T Consensus         3 ~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g   52 (91)
T PF00027_consen    3 TYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG   52 (91)
T ss_dssp             EESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES
T ss_pred             EECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeecccc
Confidence            4488888888888899999999999999999988764  57778888763

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=80.63  E-value=6.3  Score=31.82  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=43.4

Q ss_pred             eeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe
Q 039441          207 EANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN  265 (539)
Q Consensus       207 ~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N  265 (539)
                      +|.|+..+-.. ..++..+-|.+|+.-||.  .+...-+-|.+||.+.+|+|.-.||..
T Consensus         3 ~L~~g~~~~lr-~~~~~~l~v~~G~vWlT~--~g~~~D~~L~~G~~l~l~~g~~vvl~a   58 (63)
T PF11142_consen    3 ELAPGETLSLR-AAAGQRLRVESGRVWLTR--EGDPDDYWLQAGDSLRLRRGGRVVLSA   58 (63)
T ss_pred             EeCCCceEEeE-cCCCcEEEEccccEEEEC--CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence            44655544333 344556899999999987  667778899999999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	539
2ea7_A	434	Crystal Structure Of Adzuki Bean 7s Globulin-1 Leng		2e-65
2eaa_A	433	Crystal Structure Of Adzuki Bean 7s Globulin-3 Leng		6e-65
1ipk_A	416	Crystal Structures Of Recombinant And Native Soybea		7e-64
1ipj_A	416	Crystal Structures Of Recombinant And Native Soybea		4e-63
1uij_A	416	Crystal Structure Of Soybean Beta-Conglycinin Beta		1e-62
1uik_A	418	Crystal Structure Of Soybean Beta-Conglycinin Alpha		4e-62
2cau_A	445	Canavalin From Jack Bean Length = 445		1e-54
3s7e_A	418	Crystal Structure Of Ara H 1 Length = 418		5e-47
3smh_A	418	Crystal Structure Of Major Peanut Allergen Ara H 1		2e-46
2phl_A	397	The Structure Of Phaseolin At 2.2 Angstroms Resolut		4e-30
2cv6_A	424	Crystal Structure Of 8salpha Globulin, The Major Se		3e-29
2cv6_A	424	Crystal Structure Of 8salpha Globulin, The Major Se		4e-29
1cau_B	184	Determination Of Three Crystal Structures Of Canava		5e-29
1cau_A	181	Determination Of Three Crystal Structures Of Canava		7e-22
1dgr_A	178	Refined Crystal Structure Of Canavalin From Jack Be		1e-21
1dgr_X	79	Refined Crystal Structure Of Canavalin From Jack Be		4e-16
1dgr_Y	93	Refined Crystal Structure Of Canavalin From Jack Be		2e-10
1fxz_A	476	Crystal Structure Of Soybean Proglycinin A1ab1b Hom		4e-05
1ud1_A	476	Crystal Structure Of Proglycinin Mutant C88s Length		5e-05
1ucx_A	476	Crystal Structure Of Proglycinin C12g Mutant Length		5e-05
3ksc_A	496	Crystal Structure Of Pea Prolegumin, An 11s Seed Gl		5e-04

>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1 Length = 434

Iteration: 1
 Score =  246 bits (629), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 230/426 (53%), Gaps = 66/426 (15%)
Query: 160 ENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH 218
           +NNP+YF+S R FR   R++ GH+RVLQRF Q+S  ++ ++NYR+   ++ P+TL++PHH
Sbjct: 19  KNNPFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHH 78
Query: 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278
           +DA+ +LV+L G  V+TLV+ + R+S+ +E G    +PAGTT++L N D+ + L + KL 
Sbjct: 79  ADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLA 138
Query: 279 QPVNTPGQFR--------VQQ--------------------------------------- 291
            PVN P +F+         QQ                                       
Sbjct: 139 IPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEES 198
Query: 292 RQQGTIKRASQEQLKALXX-XXXXXXXXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDY 350
           R++G I    +EQ++ L                 PFNL + KPIY+N FGR++E TP+  
Sbjct: 199 REEGVIVELKREQIQELMKHAKSSSRKELSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKN 258
Query: 351 QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXX 410
            QL+++D  ++ V++ +G +++PHY+SKA  I+++ EG  + E+ G              
Sbjct: 259 PQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVG-----------LSD 307
Query: 411 XXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNF 470
                       +Q+  A LS   VF+IP  +P+A+ A+ N  L    F +NA NN+RNF
Sbjct: 308 QQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSN--LNFFAFGINAENNRRNF 365
Query: 471 LA-GKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGK-- 527
           LA GK N+M+++  E +EV+F    + +E++      ES+FV    EQQQR+E   G+  
Sbjct: 366 LAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQ-SESHFVDAQPEQQQREEGHKGRKG 424
Query: 528 SLPSIL 533
           SL SIL
Sbjct: 425 SLSSIL 430

>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3 Length = 433

Iteration: 1
 Score =  244 bits (624), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 148/437 (33%), Positives = 232/437 (53%), Gaps = 70/437 (16%)
Query: 153 QGSEEEE----ENNPYYFHS-QRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILE 207
           Q S+EE     ENNP+YF S +RF     +  GH+R+L RF Q+S  ++ ++NYR+   +
Sbjct: 7   QESQEESDSRGENNPFYFSSDRRFHTLFTNQYGHLRILHRFDQRSKQIQNLENYRVVEFK 66
Query: 208 ANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267
           + P+TL++PHH+DA+ +LV+L G+ ++TLV+ + R+S+ +E G    +PAGTT++L N D
Sbjct: 67  SKPNTLLLPHHADADFLLVVLNGRAILTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPD 126
Query: 268 NVDRLHVAKLLQPVNTPGQFR--------VQQ---------------------------- 291
           + + L + KL  PVN P +F+         QQ                            
Sbjct: 127 DNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFG 186
Query: 292 -----------RQQGTIKRASQEQLKALXX-XXXXXXXXXXXXTAPFNLLSRKPIYNNNF 339
                      R++G I    +EQ++ L                 PFNL + KPIY+N F
Sbjct: 187 EERQQQQGEESREEGVIVELKREQIQELMKHAKSSSRKELSSQDEPFNLRNSKPIYSNKF 246
Query: 340 GRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLX 399
           GR++E TP+   QL+++D  ++ V++ +G +++PHYNSKA  I+++ EG  + E+ G   
Sbjct: 247 GRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYNSKAIVIMVINEGEAKIELVG--- 303
Query: 400 XXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGF 459
                                  +Q+  A LS   VF+IP  +P+A+ A+ N  L    F
Sbjct: 304 --------LSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSN--LNFFAF 353
Query: 460 SLNARNNQRNFLA-GKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQ 518
            +NA NNQRNFLA GK N+M+++  E +EV+F    + +E++      ES+FV    EQQ
Sbjct: 354 GINAENNQRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQ-SESHFVDAQPEQQ 412
Query: 519 QRDEAGSGK--SLPSIL 533
           QR+E   G+  SL SIL
Sbjct: 413 QREEGHKGRKGSLSSIL 429

>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta- Conglycinin Beta Homotrimers Length = 416

Iteration: 1
 Score =  241 bits (615), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 222/421 (52%), Gaps = 58/421 (13%)
Query: 158 EEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVP 216
           E+ENNP+YF S   F+    + +G +R+LQRF+++S  L  + +YR+   ++ P+T+++P
Sbjct: 5   EDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLP 64
Query: 217 HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276
           HH+DA+ +L +L G+ ++TLV+++ R+S+N+  GD   +PAGTTYYL N  +   L + K
Sbjct: 65  HHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIK 124
Query: 277 LLQPVNTPGQF-----RVQQRQQ------------------------------------- 294
           L  PVN PG++        Q QQ                                     
Sbjct: 125 LAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQE 184
Query: 295 GTIKRASQEQLKALXXXXXXXX-XXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
           G I   S+EQ++ L                 PFNL SR PIY+NNFG+FFE TP+   QL
Sbjct: 185 GVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQL 244
Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXX 413
           +++D  ++ V+IN+G +++PH+NSKA  I+++ EG    E+ G                 
Sbjct: 245 RDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVG----------IKEQQQK 294
Query: 414 XXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
                    +Q+  A LS   VF+IP  +P  + A+ N   L   F +NA NNQRNFLAG
Sbjct: 295 QKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFL--AFGINAENNQRNFLAG 352
Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
            K N++ Q+ER+  E+AF   A+ +ER+     +ESYFV    +Q++    G     PSI
Sbjct: 353 EKDNVVRQIERQVQELAFPGSAQDVERLLKKQ-RESYFVDAQPQQKEEGSKGRKGPFPSI 411
Query: 533 L 533
           L
Sbjct: 412 L 412

>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-Glucosamine Length = 416

Iteration: 1
 Score =  239 bits (609), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 221/421 (52%), Gaps = 58/421 (13%)
Query: 158 EEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVP 216
           E+ENNP+Y  S   F+    + +G +R+LQRF+++S  L  + +YR+   ++ P+T+++P
Sbjct: 5   EDENNPFYLRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLP 64
Query: 217 HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276
           HH+DA+ +L +L G+ ++TLV+++ R+S+N+  GD   +PAGTTYYL N  +   L + K
Sbjct: 65  HHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIK 124
Query: 277 LLQPVNTPGQF-----RVQQRQQ------------------------------------- 294
           L  PVN PG++        Q QQ                                     
Sbjct: 125 LAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLLGEEEEQRQQE 184
Query: 295 GTIKRASQEQLKALXXXXXXXX-XXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
           G I   S+EQ++ L                 PFNL SR PIY+NNFG+FFE TP+   QL
Sbjct: 185 GVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQL 244
Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXX 413
           +++D  ++ V+IN+G +++PH+NSKA  I+++ EG    E+ G                 
Sbjct: 245 RDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVG----------IKEQQQK 294
Query: 414 XXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
                    +Q+  A LS   VF+IP  +P  + A+ N   L   F +NA NNQRNFLAG
Sbjct: 295 QKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFL--AFGINAENNQRNFLAG 352
Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
            K N++ Q+ER+  E+AF   A+ +ER+     +ESYFV    +Q++    G     PSI
Sbjct: 353 EKDNVVRQIERQVQELAFPGSAQDVERLLKKQ-RESYFVDAQPQQKEEGSKGRKGPFPSI 411
Query: 533 L 533
           L
Sbjct: 412 L 412

>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta Homotrimer (I122mK124W) Length = 416

Iteration: 1
 Score =  237 bits (605), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 221/421 (52%), Gaps = 58/421 (13%)
Query: 158 EEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVP 216
           E+ENNP+YF S   F+    + +G +R+LQRF+++S  L  + +YR+   ++ P+T+++P
Sbjct: 5   EDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLP 64
Query: 217 HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276
           HH+DA+ +L +L G+ ++TLV+++ R+S+N+  GD   +PAGTTYYL N  +   L +  
Sbjct: 65  HHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIW 124
Query: 277 LLQPVNTPGQF-----RVQQRQQ------------------------------------- 294
           L  PVN PG++        Q QQ                                     
Sbjct: 125 LAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQE 184
Query: 295 GTIKRASQEQLKALXXXXXXXX-XXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
           G I   S+EQ++ L                 PFNL SR PIY+NNFG+FFE TP+   QL
Sbjct: 185 GVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQL 244
Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXX 413
           +++D  ++ V+IN+G +++PH+NSKA  I+++ EG    E+ G                 
Sbjct: 245 RDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVG----------IKEQQQK 294
Query: 414 XXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
                    +Q+  A LS   VF+IP  +P  + A+ N   L   F +NA NNQRNFLAG
Sbjct: 295 QKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFL--AFGINAENNQRNFLAG 352
Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
            K N++ Q+ER+  E+AF   A+ +ER+     +ESYFV    +Q++    G     PSI
Sbjct: 353 EKDNVVRQIERQVQELAFPGSAQDVERLLKKQ-RESYFVDAQPQQKEEGSKGRKGPFPSI 411
Query: 533 L 533
           L
Sbjct: 412 L 412

>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime Homotrimer Length = 418

Iteration: 1
 Score =  235 bits (600), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 138/421 (32%), Positives = 223/421 (52%), Gaps = 62/421 (14%)
Query: 162 NPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDA 221
           NP++F+S+RF+   ++  GH+RVLQRF+++S  L+ + +YR+    + P+TL++PHH+DA
Sbjct: 7   NPFHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADA 66
Query: 222 ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV 281
           + ++V+L G  ++TLV+++ R+S+N++ GD + VPAGTTYY+ N DN + L +  L  PV
Sbjct: 67  DYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPV 126
Query: 282 NTPGQF----------------------------------------RVQQRQQG------ 295
           N PG+F                                        R + +QQG      
Sbjct: 127 NKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQE 186
Query: 296 -TIKRASQEQLKALXX-XXXXXXXXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
             I   S++Q++ L                 PFNL SR PIY+N  G+ FE TP+   QL
Sbjct: 187 SVIVEISKKQIRELSKHAKSSSRKTISSEDKPFNLRSRDPIYSNKLGKLFEITPEKNPQL 246
Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXX 413
           +++D  ++ V++N+G + +PH+NSKA  ++++ EG    E+ G                 
Sbjct: 247 RDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVG----------IKEQQQR 296
Query: 414 XXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
                    ++K  A LS   +F+IP G+P+ + A+ +  L    F +NA NNQRNFLAG
Sbjct: 297 QQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSD--LNFFAFGINAENNQRNFLAG 354
Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
            K N+++Q+  +  E+AF   A+ IE +  +   ESYFV    +Q++    G    L SI
Sbjct: 355 SKDNVISQIPSQVQELAFPGSAKDIENLIKSQ-SESYFVDAQPQQKEEGNKGRKGPLSSI 413
Query: 533 L 533
           L
Sbjct: 414 L 414

>pdb|2CAU|A Chain A, Canavalin From Jack Bean Length = 445

Iteration: 1
 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/400 (30%), Positives = 204/400 (51%), Gaps = 55/400 (13%)
Query: 153 QGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPST 212
           +  E   +NNPY F S +F    ++  G +R+LQRF++ +  L  + +YR+    + P+T
Sbjct: 38  ESEESRAQNNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNT 97
Query: 213 LVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRL 272
           L++PHHSD++ ++++L+G+ ++ LV+ + R+++ ++ GD I + AGT +YL N DN   L
Sbjct: 98  LLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNL 157
Query: 273 HVAKLLQPVNTPG-------------------------------------QFRVQQRQQG 295
            + K       PG                                     Q  +Q+ Q+G
Sbjct: 158 RILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEG 217
Query: 296 TIKRASQEQLKALXX-XXXXXXXXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQ 354
            I +  ++Q++ +                 PFNL SR PIY+NN+G+ +E TP+   QL+
Sbjct: 218 VIVKMPKDQIQEISKHAQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLR 277
Query: 355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXXX 414
           ++D  +  +++N+G + VPHYNS+AT I++  EGR   E+                    
Sbjct: 278 DLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVEL-------------VGLEQQQ 324
Query: 415 XXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG- 473
                   L++ +A LS G + +IP   P+AL A+ +  L  VG  +NA NN+RNFLAG 
Sbjct: 325 QQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASD--LNMVGIGVNAENNERNFLAGH 382
Query: 474 KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
           K N++ Q+ R+  ++ F      +E +   N KESYFV G
Sbjct: 383 KENVIRQIPRQVSDLTFPGSGEEVEELL-ENQKESYFVDG 421

>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1 Length = 418

Iteration: 1
 Score =  185 bits (470), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/417 (30%), Positives = 202/417 (48%), Gaps = 67/417 (16%)
Query: 161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD 220
           NNP+YF S+RF  R  + +G +RVLQRF Q+S   + + N+R+  +EA P+TLV+P H+D
Sbjct: 4   NNPFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHAD 63
Query: 221 AETILVLLKGKGVITLVSHERRESFNMEHGDV------------------------ISVP 256
           A+ ILV+ +G+  +T+ +   R+SFN++ G                          IS+P
Sbjct: 64  ADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMP 123
Query: 257 AGTT------YYLSNQD-----------------NVDRLHVAKLLQPVNTPGQ------- 286
             T       +  S++D                 N +   + ++L   N  G+       
Sbjct: 124 VNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQR 183
Query: 287 ---FRVQQRQQGTIKRASQEQLKALXXXXXXXXXXXXXX----TAPFNLLSRKPIYNNNF 339
               R  +  +G I + S+E ++ L                  T P NL   +P  +NNF
Sbjct: 184 RWSTRSSENNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNF 243
Query: 340 GRFFEATP-KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL 398
           G+ FE  P K   QLQ++D  +T VEI +G +M+PH+NSKA  IV+V +G G  E+    
Sbjct: 244 GKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVR 303
Query: 399 XXXXXXXXXXXXXXXXXXXXXXX-XLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV 457
                                    +++ +A L  G VFI+P  HP+A+ AS    LL  
Sbjct: 304 KEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSELHLL-- 361
Query: 458 GFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
           GF +NA NN R FLAG K N+++Q+E++  ++AF      +E++   N KES+FV+ 
Sbjct: 362 GFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLI-KNQKESHFVSA 417

>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1 Length = 418

Iteration: 1
 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 202/417 (48%), Gaps = 67/417 (16%)
Query: 161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD 220
           NNP+YF S+RF  R  + +G +RVLQRF Q+S   + + N+R+  +EA P+TLV+P H+D
Sbjct: 3   NNPFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHAD 62
Query: 221 AETILVLLKGKGVITLVSHERRESFNMEHGDV------------------------ISVP 256
           A+ ILV+ +G+  +T+ +   R+SFN++ G                          IS+P
Sbjct: 63  ADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMP 122
Query: 257 AGTT------YYLSNQD-----------------NVDRLHVAKLLQPVNTPGQ------- 286
             T       +  S++D                 N +   + ++L   N  G+       
Sbjct: 123 VNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQR 182
Query: 287 ---FRVQQRQQGTIKRASQEQLKALXXXXXXXXXXXXXX----TAPFNLLSRKPIYNNNF 339
               R  +  +G I + S+E ++ L                  T P NL   +P  +NNF
Sbjct: 183 RWSTRSSENNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNF 242
Query: 340 GRFFEATP-KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL 398
           G+ FE  P K   QLQ++D  +T VEI +G +++PH+NSKA  IV+V +G G  E+    
Sbjct: 243 GKLFEVKPDKKNPQLQDLDMMLTXVEIKEGALVLPHFNSKAMVIVVVNKGTGNLELVAVR 302
Query: 399 XXXXXXXXXXXXXXXXXXXXXXX-XLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV 457
                                    +++ +A L  G VFI+P  HP+A+ AS    LL  
Sbjct: 303 KEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSELHLL-- 360
Query: 458 GFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
           GF +NA NN R FLAG K N+++Q+E++  ++AF      +E++   N KES+FV+ 
Sbjct: 361 GFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLI-KNQKESHFVSA 416

>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution: Implications For A Common Vicilin(Slash)legumin Structure And The Genetic Engineering Of Seed Storage Proteins Length = 397

Iteration: 1
 Score =  129 bits (324), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 180/422 (42%), Gaps = 85/422 (20%)
Query: 156 EEEEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLV 214
           EEE ++NP+YF+S   +    ++  GH+RVLQRF Q+S  L+ +++YRL    + P TL+
Sbjct: 6   EEESQDNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLL 65
Query: 215 VPHHSDAETILVLLKGKGVITLVS-HERRESFNMEHGDVI-----SVPAGTTYYLSNQDN 268
           +P  +DAE +LV+  G  ++ LV   +RRE F +   + I      +PAGT +YL N D 
Sbjct: 66  LPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDP 125
Query: 269 VDRLHVAKLLQPVNTPG--------------------------------------QFRVQ 290
            + L + +L  PVN P                                        F  +
Sbjct: 126 KEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEE 185
Query: 291 QRQQGTIKRASQEQLKALXXXXXXXXXXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDY 350
            +Q+G I     EQ+K L                      +     N FG   E T    
Sbjct: 186 GQQEGVIVNIDSEQIKELSKHAKSSSRKSLS--------KQDNTIGNEFGNLTERTDNSL 237
Query: 351 QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXX 410
             L      ++ +E+ +G + VPHY SKA  I++V EG    E+ GP             
Sbjct: 238 NVL------ISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGP------------- 278
Query: 411 XXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNF 470
                        +   A LS   VF+IP  +P+A+ A+ N      GF +NA NN RN 
Sbjct: 279 ----KGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNF--TGFGINANNNNRNL 332
Query: 471 LAGKI-NIMNQVER-----ETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAG 524
           LAGK  N+++ + R     + + + F+     + ++       SYFV     QQ++ +  
Sbjct: 333 LAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSG-SYFVDAHHHQQEQQKGR 391
Query: 525 SG 526
            G
Sbjct: 392 KG 393

>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed Storage Protein Of Mungbean Length = 424

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 160 ENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH 218
           +NNP+YF+S R F    R+  GH+RVLQRF Q+S  ++ ++NYR+    + P+TL++PHH
Sbjct: 13  KNNPFYFNSDRWFHTLFRNQFGHLRVLQRFDQRSKQMQNLENYRVVEFNSKPNTLLLPHH 72
Query: 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278
           +DA+ +LV+L G+ V+TLV+ + R+S  +E G    +PAGTT++L N D+ + L + KL 
Sbjct: 73  ADADFLLVVLNGRAVLTLVNPDGRDSNILEQGHAQKIPAGTTFFLVNPDDEENLRIIKLA 132
Query: 279 QPVNTPGQFR 288
            PVN P +F+
Sbjct: 133 VPVNNPHRFQ 142

>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed Storage Protein Of Mungbean Length = 424

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 14/209 (6%)
Query: 325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
           PFNL ++KPIY+N  GR+FE TP+   QL+++D  +  V++ +G +++PHYNSKA  I++
Sbjct: 228 PFNLRNQKPIYSNKLGRWFEITPEKNPQLRDLDMFIRSVDMKEGSLLLPHYNSKAIVILV 287
Query: 385 VVEGRGRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPI 444
           + EG+   E+ G                          +Q+  A LS   VFIIP  +P+
Sbjct: 288 INEGKANIELVG----------QREQQKQQEEQEESWEVQRYRAELSEDDVFIIPATYPV 337
Query: 445 ALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGT 503
           A+ A+ N  L    F +NA NNQRNFLAG K N+++++  E ++V F      ++++   
Sbjct: 338 AINATSN--LNFFAFGINAENNQRNFLAGEKDNVISEIPTEVLDVTFPASGEKVQKLIKK 395
Query: 504 NPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
              ES FV    EQQ+R+EA  G   P +
Sbjct: 396 Q-SESQFVDAQPEQQEREEARKGGKGPFV 423

>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By Molecular Replacement Length = 184

Iteration: 1
 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 107/190 (56%), Gaps = 17/190 (8%)
Query: 325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
           PFNL SR PIY+NN+G+ +E TP+   QL+++D  +  +++N+G + VPHYNS+AT I++
Sbjct: 8   PFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILV 67
Query: 385 VVEGRGRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPI 444
             EGR   E+                            L++ +A LS G + +IP   P+
Sbjct: 68  ANEGRAEVEL-------------VGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPV 114
Query: 445 ALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGT 503
           AL A+ +  L  VG  +NA NN+RNFLAG K N++ Q+ R+  ++ F      +E +   
Sbjct: 115 ALKAASD--LNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELL-E 171
Query: 504 NPKESYFVAG 513
           N KESYFV G
Sbjct: 172 NQKESYFVDG 181

>pdb|1CAU|A Chain A, Determination Of Three Crystal Structures Of Canavalin By Molecular Replacement Length = 181

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 80/126 (63%)
Query: 160 ENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHS 219
           +NNPY F S +F    ++  G +R+LQRF++ +  L  + +YR+    + P+TL++PHHS
Sbjct: 2   QNNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHS 61
Query: 220 DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279
           D++ ++++L+G+ ++ LV+ + R+++ ++ GD I + AGT +YL N DN   L + K   
Sbjct: 62  DSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAI 121
Query: 280 PVNTPG 285
               PG
Sbjct: 122 TFRRPG 127

>pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean Length = 178

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 79/125 (63%)
Query: 161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD 220
           NNPY F S +F    ++  G +R+LQRF++ +  L  + +YR+    + P+TL++PHHSD
Sbjct: 1   NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSD 60
Query: 221 AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP 280
           ++ ++++L+G+ ++ LV+ + R+++ ++ GD I + AGT +YL N DN   L + K    
Sbjct: 61  SDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAIT 120
Query: 281 VNTPG 285
              PG
Sbjct: 121 FRRPG 125

>pdb|1DGR|X Chain X, Refined Crystal Structure Of Canavalin From Jack Bean Length = 79

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 52/72 (72%)
Query: 325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
           PFNL SR PIY+NN+G+ +E TP+   QL+++D  +  +++N+G + VPHYNS+AT I++
Sbjct: 3   PFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILV 62
Query: 385 VVEGRGRFEMGG 396
             EGR   E+ G
Sbjct: 63  ANEGRAEVELVG 74

>pdb|1DGR|Y Chain Y, Refined Crystal Structure Of Canavalin From Jack Bean Length = 93

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Query: 423 LQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQV 481
           L++ +A LS G + +IP   P+AL A+ +  L  VG  +NA NN+RNFLAG K N++ Q+
Sbjct: 3   LRRYAATLSEGDIIVIPSSFPVALKAASD--LNMVGIGVNAENNERNFLAGHKENVIRQI 60
Query: 482 ERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
            R+  ++ F      +E +   N KESYFV G
Sbjct: 61  PRQVSDLTFPGSGEEVEELL-ENQKESYFVDG 91

>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer Length = 476

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 27/194 (13%)
Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
           S   IYN   G    AT  D+  L  +     +  + +  M VPHYN  A +I+  + GR
Sbjct: 310 SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGR 369
Query: 390 GRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVAS 449
              ++                             +     L  G V I+P    +A   S
Sbjct: 370 ALIQV-----------------------VNCNGERVFDGELQEGRVLIVPQNFVVA-ARS 405
Query: 450 PNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESY 509
            ++    V F  N        LAG  +++N +  E ++  FN+ ++   ++   NP +  
Sbjct: 406 QSDNFEYVSFKTN-DTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFK-- 462
Query: 510 FVAGPEEQQQRDEA 523
           F+  P+E Q+R  A
Sbjct: 463 FLVPPQESQKRAVA 476

>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s Length = 476

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 27/194 (13%)
Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
           S   IYN   G    AT  D+  L  +     +  + +  M VPHYN  A +I+  + GR
Sbjct: 310 SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGR 369
Query: 390 GRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVAS 449
              ++                             +     L  G V I+P    +A   S
Sbjct: 370 ALIQV-----------------------VNCNGERVFDGELQEGRVLIVPQNFVVA-ARS 405
Query: 450 PNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESY 509
            ++    V F  N        LAG  +++N +  E ++  FN+ ++   ++   NP +  
Sbjct: 406 QSDNFEYVSFKTN-DTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFK-- 462
Query: 510 FVAGPEEQQQRDEA 523
           F+  P+E Q+R  A
Sbjct: 463 FLVPPQESQKRAVA 476

>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant Length = 476

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 27/194 (13%)
Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
           S   IYN   G    AT  D+  L  +     +  + +  M VPHYN  A +I+  + GR
Sbjct: 310 SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGR 369
Query: 390 GRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVAS 449
              ++                             +     L  G V I+P    +A   S
Sbjct: 370 ALIQV-----------------------VNCNGERVFDGELQEGRVLIVPQNFVVA-ARS 405
Query: 450 PNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESY 509
            ++    V F  N        LAG  +++N +  E ++  FN+ ++   ++   NP +  
Sbjct: 406 QSDNFEYVSFKTN-DTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFK-- 462
Query: 510 FVAGPEEQQQRDEA 523
           F+  P+E Q+R  A
Sbjct: 463 FLVPPQESQKRAVA 476

>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin From Pisum Sativum L. Length = 496

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 25/172 (14%)
Query: 334 IYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFE 393
           IYN   GR    T  D   L+ +     +  +++  M VPHYN  A +I+  ++GR R +
Sbjct: 334 IYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQ 393
Query: 394 MGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEK 453
           +                                   L  G    +P  + +A   S +++
Sbjct: 394 V-----------------------VNCNGNTVFDGELEAGRALTVPQNYAVA-AKSLSDR 429
Query: 454 LLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNP 505
              V F  N R      LAG  +++N +  + +   FN+      ++   NP
Sbjct: 430 FSYVAFKTNDRAGIAR-LAGTSSVINNLPLDVVAATFNLQRNEARQLKSNNP 480

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	539
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	4e-89
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	4e-84
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	1e-81
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	8e-80
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	9e-72
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	2e-41
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	5e-07
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	8e-31
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	1e-28
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	5e-27
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	8e-27
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	1e-15
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	1e-06
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	1e-26
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	4e-26
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	2e-12
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	5e-07
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	1e-24
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	5e-07
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	2e-24
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	1e-11
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	1e-23
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	8e-10
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	1e-16
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	3e-09
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	3e-16
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	1e-08
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	2e-15
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	1e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-06
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	3e-06
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	4e-06
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	5e-06
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	4e-05
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	1e-04
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	4e-04

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score =  279 bits (714), Expect = 4e-89
 Identities = 153/425 (36%), Positives = 240/425 (56%), Gaps = 58/425 (13%)

Query: 155 SEEEEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTL 213
              E+ENNP+YF S   F+    + +G +R+LQRF+++S  L  + +YR+   ++ P+T+
Sbjct: 2   KVREDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTI 61

Query: 214 VVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLH 273
           ++PHH+DA+ +L +L G+ ++TLV+++ R+S+N+  GD   +PAGTTYYL N  +   L 
Sbjct: 62  LLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLK 121

Query: 274 VAKLLQPVNTPGQFRV------------------------------------------QQ 291
           +  L  PVN PG++                                            Q+
Sbjct: 122 MIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQR 181

Query: 292 RQQGTIKRASQEQLKALSHHASSRRRHGRGST-APFNLLSRKPIYNNNFGRFFEATPKDY 350
           +Q+G I   S+EQ++ LS  A S  R    S   PFNL SR PIY+NNFG+FFE TP+  
Sbjct: 182 QQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKN 241

Query: 351 QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQ 410
            QL+++D  ++ V+IN+G +++PH+NSKA  I+++ EG    E+ G           +EQ
Sbjct: 242 PQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGI----------KEQ 291

Query: 411 QEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNF 470
           Q+++++EE   E+Q+  A LS   VF+IP  +P  + A+ N     + F +NA NNQRNF
Sbjct: 292 QQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNF--LAFGINAENNQRNF 349

Query: 471 LAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSL 529
           LAG K N++ Q+ER+  E+AF   A+ +ER+     +ESYFV    +Q++    G     
Sbjct: 350 LAGEKDNVVRQIERQVQELAFPGSAQDVERLLK-KQRESYFVDAQPQQKEEGSKGRKGPF 408

Query: 530 PSILD 534
           PSIL 
Sbjct: 409 PSILG 413

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score =  267 bits (683), Expect = 4e-84
 Identities = 130/421 (30%), Positives = 222/421 (52%), Gaps = 55/421 (13%)

Query: 153 QGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPST 212
           +  E   +NNPY F S +F    ++  G +R+LQRF++ +  L  + +YR+    + P+T
Sbjct: 38  ESEESRAQNNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNT 97

Query: 213 LVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRL 272
           L++PHHSD++ ++++L+G+ ++ LV+ + R+++ ++ GD I + AGT +YL N DN   L
Sbjct: 98  LLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNL 157

Query: 273 HVAKLLQPVNTPGQFR-------------------------------------VQQRQQG 295
            + K       PG                                        +Q+ Q+G
Sbjct: 158 RILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEG 217

Query: 296 TIKRASQEQLKALSHHASSRRRHGRGST-APFNLLSRKPIYNNNFGRFFEATPKDYQQLQ 354
            I +  ++Q++ +S HA S  R    S   PFNL SR PIY+NN+G+ +E TP+   QL+
Sbjct: 218 VIVKMPKDQIQEISKHAQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLR 277

Query: 355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEE 414
           ++D  +  +++N+G + VPHYNS+AT I++  EGR   E+ G              ++++
Sbjct: 278 DLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGL-------------EQQQ 324

Query: 415 EEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG- 473
           ++   S +L++ +A LS G + +IP   P+AL A+ +  +  VG  +NA NN+RNFLAG 
Sbjct: 325 QQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLNM--VGIGVNAENNERNFLAGH 382

Query: 474 KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSIL 533
           K N++ Q+ R+  ++ F      +E +   N KESYFV G               LP++ 
Sbjct: 383 KENVIRQIPRQVSDLTFPGSGEEVEELLE-NQKESYFVDGQPRHIDAGGKARRAHLPNLF 441

Query: 534 D 534
            
Sbjct: 442 R 442

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score =  260 bits (665), Expect = 1e-81
 Identities = 157/455 (34%), Positives = 250/455 (54%), Gaps = 78/455 (17%)

Query: 132 HRQKGQRRREKEGKFNPSSNWQGSEEEEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQ 190
           HR+  + R E             S    +NNP+YF+S R FR   R++ GH+RVLQRF Q
Sbjct: 3   HREHHESREE------------VSVSSGKNNPFYFNSDRWFRTLYRNEWGHIRVLQRFDQ 50

Query: 191 KSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHG 250
           +S  ++ ++NYR+   ++ P+TL++PHH+DA+ +LV+L G  V+TLV+ + R+S+ +E G
Sbjct: 51  RSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQG 110

Query: 251 DVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFR---------------------- 288
               +PAGTT++L N D+ + L + KL  PVN P +F+                      
Sbjct: 111 HAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRGFSKNIL 170

Query: 289 -------------------------VQQRQQGTIKRASQEQLKALSHHASSRRRHGRGST 323
                                     + R++G I    +EQ++ L  HA S  R    S 
Sbjct: 171 EASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQELMKHAKSSSRKELSSQ 230

Query: 324 A-PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTI 382
             PFNL + KPIY+N FGR++E TP+   QL+++D  ++ V++ +G +++PHY+SKA  I
Sbjct: 231 DEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVI 290

Query: 383 VLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGH 442
           +++ EG  + E+ G              Q++++++E S E+Q+  A LS   VF+IP  +
Sbjct: 291 MVINEGEAKIELVGL-----------SDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAY 339

Query: 443 PIALVASPNEKLLTVGFSLNARNNQRNFLA-GKINIMNQVERETMEVAFNVPARLIERVF 501
           P+A+ A+ N       F +NA NN+RNFLA GK N+M+++  E +EV+F    + +E++ 
Sbjct: 340 PVAINATSNLNF--FAFGINAENNRRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLI 397

Query: 502 GTNPKESYFVAGPEEQQQRDEAGSGK--SLPSILD 534
                ES+FV    EQQQR+E   G+  SL SIL 
Sbjct: 398 K-KQSESHFVDAQPEQQQREEGHKGRKGSLSSILG 431

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score =  255 bits (651), Expect = 8e-80
 Identities = 142/418 (33%), Positives = 219/418 (52%), Gaps = 67/418 (16%)

Query: 160 ENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHS 219
            NNP+YF S+RF  R  + +G +RVLQRF Q+S   + + N+R+  +EA P+TLV+P H+
Sbjct: 3   RNNPFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHA 62

Query: 220 DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279
           DA+ ILV+ +G+  +T+ +   R+SFN++ G  + +P+G   Y+ N+ +   L VAK+  
Sbjct: 63  DADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISM 122

Query: 280 PVNTPGQFR---------------------------------------------VQQRQQ 294
           PVNTPGQF                                               ++R Q
Sbjct: 123 PVNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQ 182

Query: 295 GTIKRASQEQLKALSHHASSR-----RRHGRGS-----------TAPFNLLSRKPIYNNN 338
                 S E  + +    S        +H +             T P NL   +P  +NN
Sbjct: 183 RRWSTRSSENNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSNN 242

Query: 339 FGRFFEATPKDY-QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP 397
           FG+ FE  P     QLQ++D  +T VEI +G +M+PH+NSKA  IV+V +G G  E+   
Sbjct: 243 FGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAV 302

Query: 398 L-SSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLT 456
               +     + E+ E+EEEE S+RE+++ +A L  G VFI+P  HP+A+ AS    L  
Sbjct: 303 RKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSELHL-- 360

Query: 457 VGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
           +GF +NA NN R FLAG K N+++Q+E++  ++AF      +E++   N KES+FV+ 
Sbjct: 361 LGFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIK-NQKESHFVSA 417

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score =  233 bits (595), Expect = 9e-72
 Identities = 120/423 (28%), Positives = 188/423 (44%), Gaps = 85/423 (20%)

Query: 155 SEEEEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTL 213
            EEE ++NP+YF+S   +    ++  GH+RVLQRF Q+S  L+ +++YRL    + P TL
Sbjct: 5   EEEESQDNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETL 64

Query: 214 VVPHHSDAETILVLLKGKGVITLVSHERRESF------NMEHGDVISVPAGTTYYLSNQD 267
           ++P  +DAE +LV+  G  ++ LV  + R  +      N    D   +PAGT +YL N D
Sbjct: 65  LLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPD 124

Query: 268 NVDRLHVAKLLQPVNTPG--------------------------------------QFRV 289
             + L + +L  PVN P                                        F  
Sbjct: 125 PKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEE 184

Query: 290 QQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKD 349
           + +Q+G I     EQ+K LS HA S  R         +L  +     N FG   E T   
Sbjct: 185 EGQQEGVIVNIDSEQIKELSKHAKSSSR--------KSLSKQDNTIGNEFGNLTERTDNS 236

Query: 350 YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQRE 409
                  +  ++ +E+ +G + VPHY SKA  I++V EG    E+ GP            
Sbjct: 237 L------NVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGP------------ 278

Query: 410 QQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRN 469
                +  + + E +   A LS   VF+IP  +P+A+ A+ N      GF +NA NN RN
Sbjct: 279 -----KGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNF--TGFGINANNNNRN 331

Query: 470 FLAGKI-NIMNQVER-----ETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEA 523
            LAGK  N+++ + R     + + + F+     + ++       SYFV     QQ++ + 
Sbjct: 332 LLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLIN-KQSGSYFVDAHHHQQEQQKG 390

Query: 524 GSG 526
             G
Sbjct: 391 RKG 393

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score =  145 bits (368), Expect = 2e-41
 Identities = 44/128 (34%), Positives = 79/128 (61%)

Query: 161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD 220
           NNPY F S +F    ++  G +R+LQRF++ +  L  + +YR+    + P+TL++PHHSD
Sbjct: 1   NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSD 60

Query: 221 AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP 280
           ++ ++++L+G+ ++ LV+ + R+++ ++ GD I + AGT +YL N DN   L + K    
Sbjct: 61  SDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAIT 120

Query: 281 VNTPGQFR 288
              PG   
Sbjct: 121 FRRPGTVE 128

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 48.8 bits (116), Expect = 5e-07
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 40/201 (19%)

Query: 326 FNLLSRKPIYNNNFGRF-----FEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKAT 380
           F       ++ N  G       F    +  + L++    V         +++PH+ S + 
Sbjct: 6   FRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDY--RVLEYCSKPNTLLLPHH-SDSD 62

Query: 381 TIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPP 440
            +VLV+EG+    +  P                  +   + +L +       G    I  
Sbjct: 63  LLVLVLEGQAILVLVNP------------------DGRDTYKLDQ-------GDAIKIQA 97

Query: 441 GHPIALVASPNEKLLTVGFSLNARNNQRNF----LAGKINIMNQV---ERETMEVAFNVP 493
           G P  L+   N + L +                 L+    + + +    +  +E +++ P
Sbjct: 98  GTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSP 157

Query: 494 ARLIERVFGTNPKESYFVAGP 514
              IE+      +E   V  P
Sbjct: 158 YDEIEQTLLQEEQEGVIVKMP 178

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X Length = 79

 Score =  113 bits (285), Expect = 8e-31
 Identities = 34/73 (46%), Positives = 52/73 (71%)

Query: 325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
           PFNL SR PIY+NN+G+ +E TP+   QL+++D  +  +++N+G + VPHYNS+AT I++
Sbjct: 3   PFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILV 62

Query: 385 VVEGRGRFEMGGP 397
             EGR   E+ G 
Sbjct: 63  ANEGRAEVELVGL 75

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score =  117 bits (294), Expect = 1e-28
 Identities = 55/399 (13%), Positives = 100/399 (25%), Gaps = 92/399 (23%)

Query: 189 SQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE-SFNM 247
           S       G                        +      +G+        +  +   ++
Sbjct: 90  SSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHI 149

Query: 248 EHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQF-------------------- 287
             GD I+   G   +  N  N   L +  +L   +   Q                     
Sbjct: 150 RTGDTIATHPGVAQWFYNDGN-QPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWI 208

Query: 288 --------------------------------RVQQRQQ--GTIKRASQEQLKALSHHAS 313
                                           ++Q +Q   G I R             S
Sbjct: 209 EGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRS 268

Query: 314 SRRRHGR----------GSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYV 363
            R +               T   +  S   +Y    G        D   L+ +       
Sbjct: 269 QRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRG 328

Query: 364 EINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL 423
            I Q  M++P +N+ A  ++ V +G    ++      R                      
Sbjct: 329 SIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDR---------------------- 366

Query: 424 QKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVER 483
                 +S G +  IP G  +   A+ +E+   + F  NA N Q N LAG+ +++  +  
Sbjct: 367 -VFDGQVSQGQLLSIPQGFSVVKRAT-SEQFRWIEFKTNA-NAQINTLAGRTSVLRGLPL 423

Query: 484 ETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDE 522
           E +   + +      RV   N  E+              
Sbjct: 424 EVISNGYQISLEEARRVKF-NTIETTLTHSSGPASYGGP 461

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score =  113 bits (284), Expect = 5e-27
 Identities = 60/468 (12%), Positives = 138/468 (29%), Gaps = 93/468 (19%)

Query: 113 ERRESGEQQQQQCKSWCEKHRQKGQRRREKEGKFNPSSNWQGSEEEEENNPYYFHSQRFR 172
           E ++S +Q +QQ +    + +Q+G++ R++  +          +  ++        Q+  
Sbjct: 94  ESQQSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQG 153

Query: 173 YRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKG 232
            + R             QK+  +R  D   +      P+ +    ++D +  LV +    
Sbjct: 154 QQGRPQQQQQFRQLDRHQKTRRIREGDVVAI------PAGVAYWSYNDGDQELVAVNLFH 207

Query: 233 VITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQ------ 286
           V +  +   +                       +   ++    +  QP   P Q      
Sbjct: 208 VSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGN 267

Query: 287 --------------------------FRVQQRQQGTIKRAS-------------QEQLKA 307
                                      + Q   +  I +               + + + 
Sbjct: 268 GNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEE 327

Query: 308 LSHHASSRRRHGRGSTAPFNLL----------------SRKPIYNNNFGRFFEATPKDYQ 351
                  + R  +G     N L                 R  I++   GR       +  
Sbjct: 328 RQQEQLQQERQQQGEQLMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLP 387

Query: 352 QLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQ 411
            L+ +          + G+  PH+N  A ++V V+ G  R ++                 
Sbjct: 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNE-------------- 433

Query: 412 EEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFL 471
                         +   +  G +FI+P  H +   A  N+      F     N   N L
Sbjct: 434 ---------NGDAILDQEVQQGQLFIVPQNHGVIQQAG-NQGFEYFAFKTEE-NAFINTL 482

Query: 472 AGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQ 519
           AG+ + +  +  E +  A+ +      ++   N +E+  ++  ++++ 
Sbjct: 483 AGRTSFLRALPDEVLANAYQISREQARQLKY-NRQETIALSSSQQRRA 529

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score =  112 bits (280), Expect = 8e-27
 Identities = 41/294 (13%), Positives = 85/294 (28%), Gaps = 36/294 (12%)

Query: 238 SHERRESFNMEHGDVISVPAG-TTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGT 296
             ER            ++ +G    +L     +D   V KL    +   +          
Sbjct: 192 EWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEV 251

Query: 297 IKRASQEQLKALSHHASSRRRHGRGSTAPF---------NLLSRKPIYNNNFGRFFEATP 347
           +     E+ ++   +  S      G                  R  ++N   GR   A  
Sbjct: 252 LLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVFNPRGGRISTANY 311

Query: 348 KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQ 407
                L+++        +    M+ PHY   + +++    G  R ++             
Sbjct: 312 HTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQS------ 365

Query: 408 REQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQ 467
                                 +  G V +IP    +   AS +     + F  N  N  
Sbjct: 366 -----------------VFDGEVREGQVLMIPQNFVVIKRAS-DRGFEWIAFKTND-NAI 406

Query: 468 RNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRD 521
            N LAG+++ M  +    +   + +     +R+     +E   ++    Q +R+
Sbjct: 407 TNLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKY-GQQEMRVLSPGRSQGRRE 459

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score = 78.0 bits (191), Expect = 1e-15
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 29/214 (13%)

Query: 137 QRRREKEGKFNPSSNWQGSEEEEENNPYY--FHSQRFRYRVRSDSGHMRVLQRFSQKSHL 194
           Q  ++   +F  S  WQ    +           +Q    R  +++G   V  + + +   
Sbjct: 1   QIEQQSPWEFQGSEVWQQHRYQSPRACRLENLRAQDPVRRAEAEAGFTEVWDQDNDEFQC 60

Query: 195 LRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVS---------------- 238
                   +      P  L++P  S+A  ++ + +G G+  +                  
Sbjct: 61  A----GVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQS 116

Query: 239 ------HERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQR 292
                  + ++      GD++ VPAG ++++ N+   D + +       N   Q     R
Sbjct: 117 AGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIV-FADTRNVANQIDPYLR 175

Query: 293 QQGTIKRASQEQLKALSHHASSRRRHGRGSTAPF 326
           +     R  Q +        SSR+      +   
Sbjct: 176 KFYLAGRPEQVERGVEEWERSSRKGSSGEKSGNI 209

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 38/255 (14%), Positives = 76/255 (29%), Gaps = 42/255 (16%)

Query: 302 QEQLKALSHHASSRRRHGRGSTAP------FNLLSRKPIYNNNFGRFFEATPKDYQQLQE 355
            EQ        S   +  R  +                      G   E   +D  + Q 
Sbjct: 2   IEQQSPWEFQGSEVWQQHRYQSPRACRLENLRAQDPVRRAEAEAGFT-EVWDQDNDEFQC 60

Query: 356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEE 415
               +    I   G+++P + S A  ++ V +G G   +  P  +   Q   R  Q    
Sbjct: 61  AGVNMIRHTIRPKGLLLPGF-SNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQ---S 116

Query: 416 EEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRN------ 469
              + ++  +       G + ++P G    +       L+ + F+       +       
Sbjct: 117 AGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRK 176

Query: 470 -FLAGKI------------------------NIMNQVERETMEVAFNVPARLIERVFGTN 504
            +LAG+                         NI +    E +E AF +   L+ ++ G +
Sbjct: 177 FYLAGRPEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGED 236

Query: 505 PKESYFVAGPEEQQQ 519
            +    V   E+ + 
Sbjct: 237 DERDRIVQVDEDFEV 251

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y Length = 93

 Score =  102 bits (256), Expect = 1e-26
 Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 4/93 (4%)

Query: 422 ELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQ 480
           +L++ +A LS G + +IP   P+AL A+ +  +  VG  +NA NN+RNFLAG K N++ Q
Sbjct: 2   QLRRYAATLSEGDIIVIPSSFPVALKAASDLNM--VGIGVNAENNERNFLAGHKENVIRQ 59

Query: 481 VERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
           + R+  ++ F      +E +   N KESYFV G
Sbjct: 60  IPRQVSDLTFPGSGEEVEELLE-NQKESYFVDG 91

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score =  110 bits (275), Expect = 4e-26
 Identities = 46/270 (17%), Positives = 83/270 (30%), Gaps = 33/270 (12%)

Query: 262 YLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIK-----RASQEQLKALSHHASSRR 316
            L+    V      KL    +  G     Q     IK        +EQ    S +  +  
Sbjct: 219 LLAESFGVSEEIAQKLQAEQDDRGNIVRVQEGLHVIKPPSRAWEEREQGSRGSRYLPNGV 278

Query: 317 RHGRGST-APFNL--LSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVP 373
                S     N+   S+  +Y    GR       +   L+ +        + +  MM P
Sbjct: 279 EETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAP 338

Query: 374 HYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG 433
           HYN  A  I+  V GRGR ++                                   LS G
Sbjct: 339 HYNLNAHNIMYCVRGRGRIQIVNDQGQS-----------------------VFDEELSRG 375

Query: 434 VVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVP 493
            + ++P    I   A   +    V F   + N     LAG+ + +  +  + +   + + 
Sbjct: 376 QLVVVPQNFAIVKQAF-EDGFEWVSF-KTSENAMFQSLAGRTSAIRSLPIDVVSNIYQIS 433

Query: 494 ARLIERVFGTNPKESYFVAGPEEQQQRDEA 523
                 +    P+ + F +  + + +R  +
Sbjct: 434 REEAFGLKFNRPETTLFRSSGQGEYRRKIS 463

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score = 68.0 bits (165), Expect = 2e-12
 Identities = 34/262 (12%), Positives = 80/262 (30%), Gaps = 51/262 (19%)

Query: 154 GSEEEEENNPYYFH---SQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANP 210
              E ++ N        +     R++++ G   V   +       R      +      P
Sbjct: 4   RFREFQQGNECQIDRLTALEPTNRIQAERGLTEV---WDSNEQEFR-CAGVSVIRRTIEP 59

Query: 211 STLVVPHHSDAETILVLLKGKGVITLVS-------------------------------- 238
             L++P  + A  ++ + +G G+  ++                                 
Sbjct: 60  HGLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGM 119

Query: 239 ------HERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQR 292
                  + ++  ++  GD+ ++PAG +++  N  +   + V  L+   N   Q      
Sbjct: 120 RGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAV-ILIDTANHANQLDKNFP 178

Query: 293 QQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQ 352
            +  +    Q++       +   RR  R +   F     + +        F  + +  Q+
Sbjct: 179 TRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLL-----AESFGVSEEIAQK 233

Query: 353 LQEIDAGVTYVEINQGGMMVPH 374
           LQ        +   Q G+ V  
Sbjct: 234 LQAEQDDRGNIVRVQEGLHVIK 255

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score = 51.1 bits (121), Expect = 5e-07
 Identities = 36/223 (16%), Positives = 70/223 (31%), Gaps = 44/223 (19%)

Query: 340 GRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEM---GG 396
               E    + Q+ +     V    I   G+++P + + A  ++ + +G G   M   G 
Sbjct: 32  RGLTEVWDSNEQEFRCAGVSVIRRTIEPHGLLLPSF-TSAPELIYIEQGNGITGMMIPGC 90

Query: 397 PLSSRWSQESQREQQEEEEEEESSRELQKISA----------NLSPGVVFIIPPGHPIAL 446
           P +     +  +  ++E   E+ SR+                +L  G +F +P G     
Sbjct: 91  PETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWA 150

Query: 447 VASPNEKLLTVGF--------SLNARNNQRNFLAGKI----------------------N 476
             + ++ L+ V           L+     R +LAGK                       N
Sbjct: 151 YNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGN 210

Query: 477 IMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQ 519
           I    E   +  +F V   + +++          V   E    
Sbjct: 211 IFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQEGLHV 253

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  106 bits (265), Expect = 1e-24
 Identities = 39/286 (13%), Positives = 96/286 (33%), Gaps = 36/286 (12%)

Query: 243 ESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQ 302
           ++F ++   ++    G      +++    + V   L+ ++   +    + ++        
Sbjct: 253 QAFQVDDRQIVQNLRGEN---ESEEQGAIVTVRGGLRILSPDRKRGADEEEEYDEDEYEY 309

Query: 303 EQLKALSHHASSRRRHGRGST-------APFNLLSRKPIYNNNFGRFFEATPKDYQQLQE 355
           ++        S    +G   T                 IYN   G    A   +   L+ 
Sbjct: 310 DEEDRRRGRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRW 369

Query: 356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEE 415
           +     Y  + +  + VPHYN+ A +I+  + GR   ++     +R              
Sbjct: 370 LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNR-------------- 415

Query: 416 EEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKI 475
                         L  G V ++P    +A  +  ++    V F  ++       LAG+ 
Sbjct: 416 ---------VYDEELQEGHVLVVPQNFAVAGKSQ-SDNFEYVAFKTDS-RPSIANLAGEN 464

Query: 476 NIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRD 521
           ++++ +  E +  ++ +P     ++   N    +FV   ++  +  
Sbjct: 465 SVIDNLPEEVVANSYGLPREQARQLK-NNNPFKFFVPPSQQSPRAV 509

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score = 51.5 bits (122), Expect = 5e-07
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 340 GRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEM---GG 396
           G + E    + Q+ +     ++ + + +  +  P Y S A   + + +GRG F +   G 
Sbjct: 30  GGYIETWNPNNQEFECAGVALSRLVLRRNALRRPFY-SNAPQEIFIQQGRGYFGLIFPGC 88

Query: 397 PLSSRWSQESQREQQEEEEEEESSRELQKISAN--------LSPGVVFIIPPGHPIALVA 448
           P +     +  R  Q +        E Q              + G +  +P G    L  
Sbjct: 89  PSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYN 148

Query: 449 SPNEKLLTVGFSLNARNNQRNFL 471
             +  +  V  SL   NN  N L
Sbjct: 149 DHDTDV--VAVSLTDTNNNDNQL 169

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score =  105 bits (263), Expect = 2e-24
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 34/247 (13%)

Query: 284 PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAP-------FNLLSRKPIYN 336
           P +   ++  +    +   +  +      S  RR+G   T             S   IYN
Sbjct: 257 PQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYN 316

Query: 337 NNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGG 396
              G    AT  D+  L  +     +  + +  M VPHYN  A +I+  + GR   ++  
Sbjct: 317 PQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVN 376

Query: 397 PLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLT 456
               R                            L  G V I+P    +A  +  ++    
Sbjct: 377 CNGER-----------------------VFDGELQEGRVLIVPQNFVVAARSQ-SDNFEY 412

Query: 457 VGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEE 516
           V F           LAG  +++N +  E ++  FN+ ++   ++   N     F+  P+E
Sbjct: 413 VSF-KTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIK--NNNPFKFLVPPQE 469

Query: 517 QQQRDEA 523
            Q+R  A
Sbjct: 470 SQKRAVA 476

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score = 66.1 bits (160), Expect = 1e-11
 Identities = 44/335 (13%), Positives = 110/335 (32%), Gaps = 57/335 (17%)

Query: 152 WQGSEEEEENNPYYFH---SQRFRYRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAIL 206
           +  S E+ + N        + +   R+ S+ G   +++ ++  +   +  G+   R  + 
Sbjct: 1   FS-SREQPQQNECQIQKLNALKPDNRIESEGG---LIETWNPNNKPFQCAGVALSRCTL- 55

Query: 207 EANPSTLVVPHHSDAETILVLLKGKGVITLV-----------------------SHERRE 243
             N + L  P +++    + + +GKG+  ++                           ++
Sbjct: 56  --NRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQK 113

Query: 244 SFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQR-------QQGT 296
            +N   GD+I+VP G  +++ N ++   + V+ ++   +   Q     R       Q+  
Sbjct: 114 IYNFREGDLIAVPTGVAWWMYNNEDTPVVAVS-IIDTNSLENQLDQMPRRFYLAGNQEQE 172

Query: 297 IKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEI 356
             +  QEQ    S     ++       +  +  + + +        F    +  + LQ  
Sbjct: 173 FLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFL-----EHAFSVDKQIAKNLQ-- 225

Query: 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEE 416
                    N+G         K    V+      + +           E  + + +++  
Sbjct: 226 -------GENEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHC 278

Query: 417 EESSRELQKISANLSPGVVFIIPPGHPIALVASPN 451
           +       K   N     +  +   H I   +SP+
Sbjct: 279 QRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPD 313

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score =  103 bits (257), Expect = 1e-23
 Identities = 48/342 (14%), Positives = 117/342 (34%), Gaps = 34/342 (9%)

Query: 186 QRFSQKSHLLRGIDNYRLA----ILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHER 241
           ++ ++ +++  G     L     +       L   +  + +  +V  K KG ++++S   
Sbjct: 182 EQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIV--KVKGGLSIISPPE 239

Query: 242 RESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRAS 301
           +++ +                   + +       +  +      + R ++ ++   +R  
Sbjct: 240 KQARHQRGSRQEEDEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGG 299

Query: 302 QEQLKALSHHASSRRRHGRGSTAPFNLL--SRKPIYNNNFGRFFEATPKDYQQLQEIDAG 359
            ++ K+     +        +    N+   S   IYN   GR    T  D   L+ +   
Sbjct: 300 SQKGKSRRQGDNGLEETVCTAKLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLS 359

Query: 360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEES 419
             +  +++  M VPHYN  A +I+  ++GR R ++     +                   
Sbjct: 360 AEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNT------------------ 401

Query: 420 SRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMN 479
                     L  G    +P  + +A  +  +++   V F  N        LAG  +++N
Sbjct: 402 -----VFDGELEAGRALTVPQNYAVAAKSL-SDRFSYVAFKTND-RAGIARLAGTSSVIN 454

Query: 480 QVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRD 521
            +  + +   FN+      ++  +N    + V   E + +  
Sbjct: 455 NLPLDVVAATFNLQRNEARQLK-SNNPFKFLVPARESENRAS 495

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score = 60.3 bits (145), Expect = 8e-10
 Identities = 46/322 (14%), Positives = 97/322 (30%), Gaps = 40/322 (12%)

Query: 174 RVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGV 233
           R+ S+ G +     ++  +   R      L+      + L  P++S+A   + + +G G 
Sbjct: 23  RIESEGGLIET---WNPNNKQFRCA-GVALSRATLQRNALRRPYYSNAPQEIFIQQGNGY 78

Query: 234 ITLVSHERRESF----------------------NMEHGDVISVPAGTTYYLSNQDNVDR 271
             +V     E+F                          GD+I+VP G  +++ N  +   
Sbjct: 79  FGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPV 138

Query: 272 LHVAKLLQPVNTPGQFRVQQRQ---QGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNL 328
           + V+ L    ++  Q     R+    G  ++   +           +           N+
Sbjct: 139 IAVS-LTDIRSSNNQLDQMPRRFYLAGNHEQEFLQY-------QHQQGGKQEQENEGNNI 190

Query: 329 LS--RKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVV 386
            S  ++    + F           Q   E +     V++  G  ++     +A       
Sbjct: 191 FSGFKRDFLEDAFN-VNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQARHQRGSR 249

Query: 387 EGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL 446
           +     E   P   R S++ + E ++EE +    R   +                     
Sbjct: 250 QEEDEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGGSQKGKSRRQG 309

Query: 447 VASPNEKLLTVGFSLNARNNQR 468
                E + T    LN   +  
Sbjct: 310 DNGLEETVCTAKLRLNIGPSSS 331

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A Length = 493

 Score = 58.4 bits (140), Expect = 3e-09
 Identities = 58/345 (16%), Positives = 115/345 (33%), Gaps = 46/345 (13%)

Query: 172 RYRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLK 229
            +RV S+ G +     ++ +   L+  G+   +  +   N + L +P +S    ++++++
Sbjct: 20  DHRVESEGGLIET---WNSQHPELQCAGVTVSKRTL---NRNGLHLPSYSPYPQMIIVVQ 73

Query: 230 GKGVITLVSHERRESF--------------------------NMEHGDVISVPAGTTYYL 263
           GKG I        E+F                          +   GDV+ +P G  Y+ 
Sbjct: 74  GKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWT 133

Query: 264 SNQDNVDRLHVAKLLQPVNTPGQFRVQQR-------QQGTIKRASQEQLKALSHHASSRR 316
            N  +   +    LL   N   Q     R                Q+Q +  SH    + 
Sbjct: 134 YNTGDEP-VVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQG 192

Query: 317 RHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYN 376
           +H +      ++LS      +   + F       ++L+  D     +   +GG+ V    
Sbjct: 193 QHQQQEEEGGSVLSG--FSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPK 250

Query: 377 SKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436
            +        E     +       R S     + ++E+EEE+  R          P    
Sbjct: 251 WQEQEDEDEDEDEEYEQTPSYPPRRPSHGKHEDDEDEDEEEDQPRPDHPPQRPSRPEQQE 310

Query: 437 IIPPGHPIALVASPNEKLLTVGFSLN--ARNNQRNFLAGKINIMN 479
               G         N   + +  ++   +R +  N  AG+I+ +N
Sbjct: 311 PRGRGCQTRNGVEENICTMKLHENIARPSRADFYNPKAGRISTLN 355

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 79.4 bits (195), Expect = 3e-16
 Identities = 47/332 (14%), Positives = 100/332 (30%), Gaps = 60/332 (18%)

Query: 210 PSTLVVPH-HSDAETILVLLKGKGVITLVSHE-RRESFNMEHGDVISVPAGTTYYLSNQD 267
           P  +   H H++A     +++G+  ITL S E + E  +++ G +   P G  + +    
Sbjct: 61  PGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIG 120

Query: 268 N----------------VDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHH 311
                                 V   L                  + +  ++Q+   S+ 
Sbjct: 121 PDTAKFLLVFNDGTFSEGATFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQVYISSYG 180

Query: 312 ASSRRRHGRGSTAP---------FNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTY 362
            +S                     NLL ++P+ +        A+ K++     +      
Sbjct: 181 PASGPLASATPQGQTAKIEVPHTHNLLGQQPLVSLGGNELRLASAKEFPGSFNM--TGAL 238

Query: 363 VEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRE 422
           + +  G M   H++  A     V++G     +                           E
Sbjct: 239 IHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFAS------------------------E 274

Query: 423 LQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVE 482
            +   + L  G V  +P G+  A+  S  + L  V    N  + Q   L+     +    
Sbjct: 275 GKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVV-FNDGDYQSIDLS---TWLASNP 330

Query: 483 RETMEVAFNVPARLIERVFGTNPKESYFVAGP 514
              +   F +   L +++     +++ F    
Sbjct: 331 SSVLGNTFQISPELTKKL---PVQDTIFSLPT 359

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 27/192 (14%)

Query: 329 LSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEG 388
            S+ P+   + G   +    ++   + +     Y+ +  G +   H+++ A     V+EG
Sbjct: 25  FSKTPLVLYDGGTTKQVGTYNFPVSKGM--AGVYMSLEPGAIRELHWHANAAEWAYVMEG 82

Query: 389 RGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA 448
           R R  +  P                        E +   A++  G ++  P G   ++  
Sbjct: 83  RTRITLTSP------------------------EGKVEIADVDKGGLWYFPRGWGHSIEG 118

Query: 449 SPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKES 508
              +    +    N             + ++      +E      A  + ++       S
Sbjct: 119 IGPDTAKFLLV-FNDGTFSEGATFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQVYIS 177

Query: 509 YFVAGPEEQQQR 520
            +          
Sbjct: 178 SYGPASGPLASA 189

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 77.2 bits (189), Expect = 2e-15
 Identities = 39/364 (10%), Positives = 101/364 (27%), Gaps = 60/364 (16%)

Query: 181 HMRVLQRFSQK---SHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLV 237
           H R+ +    +      L   +N     +   P  +   H         ++ G   +T+V
Sbjct: 56  HNRLEKGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIV 115

Query: 238 SHE-RRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGT 296
             + R    ++  GD+   P+G  + +   +      +       +    F++      T
Sbjct: 116 DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHT 175

Query: 297 IK---RASQEQLKALSHHASSRRRHGRGSTAPFN-------------------LLSRKPI 334
            K    A+    K    +   + ++   +  P +                    L  +  
Sbjct: 176 PKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEP 235

Query: 335 YNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEM 394
             +  G+ + A   +++  + I      V +  G M   H++         + G+ R  +
Sbjct: 236 IESEGGKVYIADSTNFKVSKTI--ASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTV 293

Query: 395 GGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKL 454
                                      +    + N   G V  +P      +    +E L
Sbjct: 294 FAS------------------------DGHARTFNYQAGDVGYVPFAMGHYVENIGDEPL 329

Query: 455 LTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGP 514
           + +        +           +  +    ++   ++     + +     KE + V   
Sbjct: 330 VFLEIF----KDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVL----SKEKHPVVKK 381

Query: 515 EEQQ 518
           +  +
Sbjct: 382 KCSK 385

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 47/256 (18%)

Query: 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275
            H  +   +  +++GKG  T V  ER     M  GD I  P    +   N  +   + + 
Sbjct: 115 SHRHNQSALRFIVEGKGAFTAVDGER---TPMNEGDFILTPQWRWHDHGNPGDEPVIWLD 171

Query: 276 KLLQPV--NTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKP 333
            L  P+       F     ++       +              RH  G+++P        
Sbjct: 172 GLDLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDR 231

Query: 334 IYN--NNFGRFFEATPKDYQQLQEIDA----------GVTYVEINQGGMMVPHYNSKATT 381
                ++  R  +A   D  +++ ++           G     + +G        + + T
Sbjct: 232 SREVLHDLTRLGDADEWDGYKMRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDS-T 290

Query: 382 IVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG 441
           I  VVEG G+  +G                            +    + S   +F++P  
Sbjct: 291 IYHVVEGSGQVIIGN---------------------------ETF--SFSAKDIFVVPTW 321

Query: 442 HPIALVASPNEKLLTV 457
           H ++   + +  L + 
Sbjct: 322 HGVSFQTTQDSVLFSF 337

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 14  IREREEERHREQRERDWEREREQFEDINIVPQDPEEEYKQCKQLCEKQEAVQRRCERHYK 73
           IR+  EE+ +  +E D   +  + E      +D EE  ++  +  EK +   R  ++ + 
Sbjct: 87  IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146

Query: 74  EQQ 76
           +Q 
Sbjct: 147 QQP 149

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Length = 227

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 33/244 (13%), Positives = 73/244 (29%), Gaps = 73/244 (29%)

Query: 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275
                         G G I + +        + +GD + + A   Y +  +DN+      
Sbjct: 52  AEAMLGNRYYYCFNGNGEIFIEN----NKKTISNGDFLEITANHNYSIEARDNL------ 101

Query: 276 KLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIY 335
           KL++     G   ++ +    ++ AS   L  +  +                ++S+  + 
Sbjct: 102 KLIEIGEKIGDGNMENKTLKMLESASAFNLAEVVEY------------QEGKIVSKNLVA 149

Query: 336 NNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMG 395
             N                     +T +   +G  + PH  +    +V V++G G++ + 
Sbjct: 150 KPNL-------------------VMTIMSFWKGESLDPH-KAPGDALVTVLDGEGKYYVD 189

Query: 396 GPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS--PNEK 453
           G        +                        +  G   ++P   P A+ A     + 
Sbjct: 190 G--------KPFI---------------------VKKGESAVLPANIPHAVEAETENFKM 220

Query: 454 LLTV 457
           LL +
Sbjct: 221 LLIL 224

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 40/270 (14%), Positives = 70/270 (25%), Gaps = 67/270 (24%)

Query: 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275
            H         +++G+GV T+V+ +      M  GD++  P    +   N  +     + 
Sbjct: 118 EHRHSQNAFRFVVEGEGVWTVVNGDP---VRMSRGDLLLTPGWCFHGHMNDTDQPMAWID 174

Query: 276 KLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRK--- 332
            L  P +   Q  V   + G+ +        A  + +   R        P + L      
Sbjct: 175 GLDIPFSQ--QMDVGFFEFGSDRV----TDYATPNFSRGERLWCHPGLRPLSGLQNTVAS 228

Query: 333 PIYNNNFGRFFEATPKDYQQLQEIDA-------------------------GVTYVEINQ 367
           PI    +     A  +      E                               +  +  
Sbjct: 229 PIGAYRWEFTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRA 288

Query: 368 GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKIS 427
           G           +T+  V EG G   M G                           +   
Sbjct: 289 GTETATRNEV-GSTVFQVFEGAGAVVMNG---------------------------ETT- 319

Query: 428 ANLSPGVVFIIPPGHPIALVASPNEKLLTV 457
             L  G +F++P   P +L A     L   
Sbjct: 320 -KLEKGDMFVVPSWVPWSLQAETQFDLFRF 348

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 41/310 (13%), Positives = 78/310 (25%), Gaps = 71/310 (22%)

Query: 174 RVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPH-HSDAETILVLLKGKG 232
           R         V+             D + + +L          H H D    +++L GK 
Sbjct: 25  RYLFGRQVATVMANGRSTG------DLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKL 78

Query: 233 VITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQF----- 287
            +TL      E + +  GD  ++PAGT +    Q      H  +L+      G       
Sbjct: 79  ELTLDG----ERYLLISGDYANIPAGTPHSYRMQS-----HRTRLVS-YTMKGNVAHLYS 128

Query: 288 RVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNF--GRFFEA 345
            +              +  +    A +                   +             
Sbjct: 129 VIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPY 188

Query: 346 TPKDYQQLQEIDAGVTY-----------------VEINQGGMMVPHYNSKATTIVLVVEG 388
             +  +  + +     +                  E  +G  +V HY+   T     +EG
Sbjct: 189 VLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEG 248

Query: 389 RGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL-V 447
           +      G    +  Q                         L+PG    +P     +  +
Sbjct: 249 QMTMWTDG----QEIQ-------------------------LNPGDFLHVPANTVHSYRL 279

Query: 448 ASPNEKLLTV 457
            S   K++ V
Sbjct: 280 DSHYTKMVGV 289

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 17/143 (11%)

Query: 146 FNPSSNWQGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAI 205
              S+      E  +    Y        R+ +     R++               + +  
Sbjct: 169 PACSAKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTD------GQFIVVS 222

Query: 206 LEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLS 264
            E      +V H H         L+G+  +        +   +  GD + VPA T +   
Sbjct: 223 SEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT----DGQEIQLNPGDFLHVPANTVHSYR 278

Query: 265 NQDNVDRLHVAKLLQPVNTPGQF 287
                   H  K++  V  PG F
Sbjct: 279 LDS-----HYTKMVG-VLVPGLF 295

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 69/557 (12%), Positives = 143/557 (25%), Gaps = 198/557 (35%)

Query: 29  DWERE---REQFEDINIVPQDPEEEYKQCKQLCEKQE--------------------AVQ 65
           D  +    +E+ + I +         +    L  KQE                     ++
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 66  RRC------ERHYKEQQGGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCERRE--- 116
                     R Y EQ     RD + +D++   + N     P  +  Q L +    +   
Sbjct: 100 TEQRQPSMMTRMYIEQ-----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 117 ------SGEQQQQQCKSW-----CEKHRQKGQRRREKEGKFNPSSNWQGSEEEEENNPYY 165
                 SG       K+W     C  ++         + K +    W   +         
Sbjct: 155 IDGVLGSG-------KTWVALDVCLSYKV--------QCKMDFKIFWLNLKNCNSPETVL 199

Query: 166 FHSQRFRYRVRSD-----SGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH-S 219
              Q+  Y++  +          +  R       LR     RL   +   + L+V  +  
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSKPYENCLLVLLNVQ 254

Query: 220 DAET---------ILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN----- 265
           +A+          IL+  + K V   +S       +++H  +   P      L       
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 266 -QD------NVDRLHV----AKLLQPVNTPGQFR-VQQRQQGTIKRASQEQLKALSHHAS 313
            QD        +   +      +   + T   ++ V   +  TI  +S   L+       
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------- 367

Query: 314 SRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVP 373
                                            P +Y+++        +  +     + P
Sbjct: 368 ---------------------------------PAEYRKM--------FDRL----SVFP 382

Query: 374 HYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG 433
             ++   TI+L +           +   W    + +      +      ++K        
Sbjct: 383 -PSAHIPTILLSL-----------I---WFDVIKSDVMVVVNKLHKYSLVEK---QPKES 424

Query: 434 VVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVP 493
            + I      I L                        L  K+     + R  ++  +N+P
Sbjct: 425 TISI----PSIYLE-----------------------LKVKLENEYALHRSIVD-HYNIP 456

Query: 494 ARLIERVFGTNPKESYF 510
                        + YF
Sbjct: 457 KTFDSDDLIPPYLDQYF 473

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 30/266 (11%), Positives = 60/266 (22%), Gaps = 57/266 (21%)

Query: 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTY-------------- 261
            H   A  +  +++G G  T+V   +     +   D +  P GT +              
Sbjct: 138 AHRHAASALRFIMEGSGAYTIVDGHK---VELGANDFVLTPNGTWHEHGILESGTECIWQ 194

Query: 262 ------YLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSR 315
                   +  +           Q  + P            +     +  K  S      
Sbjct: 195 DGLDIPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYS 254

Query: 316 RRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHY 375
                   A  N          +        P+          G +   +  G     H 
Sbjct: 255 WEPTY--EALLNYAKASDGSPYDGLILRYTNPQTGGHPMLT-MGASMQMLRPGEHTKAHR 311

Query: 376 NSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435
           ++    I  V +G+G   +GG                           ++   + S   +
Sbjct: 312 HTGN-VIYNVAKGQGYSIVGG---------------------------KRF--DWSEHDI 341

Query: 436 FIIPPGHPIALV-ASPNEKLLTVGFS 460
           F +P             +      F+
Sbjct: 342 FCVPAWTWHEHCNTQERDDACLFSFN 367

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Length = 201

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 38/189 (20%)

Query: 326 FNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLV 385
             L         N     E    ++     +   +  V+   GG   PH + +AT I +V
Sbjct: 40  SKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMV 99

Query: 386 VEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA 445
           ++G     + G L S                       +  S  +  G  F+IP G    
Sbjct: 100 MKGELLVGILGSLDS---------------------GNKLYSRVVRAGETFVIPRGLMHF 138

Query: 446 LVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVER-------ETMEVAFNVPARLIE 498
                  +     + + + N+Q     G + +   +           +  A  V A ++E
Sbjct: 139 QFNVGKTEA----YMVVSFNSQN---PGIVFVPLTLFGSDPPIPTPVLTKALRVEAGVVE 191

Query: 499 RV---FGTN 504
            +   F   
Sbjct: 192 LLKSKFAGG 200

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 13/163 (7%)

Query: 138 RRREKEGKFNPSSNWQGSEE---EEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHL 194
           R     G    ++ W            +PY+  +      + S  G+ +++  F   +  
Sbjct: 186 RTDTVNGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGY-QIVAPFVTATQA 244

Query: 195 LRGIDNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVI 253
                      +   PST+ VP           + +G+ V+ +       +  +  GDV 
Sbjct: 245 QDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQI---GDYAATELGSGDVA 301

Query: 254 SVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGT 296
            +P G  +   ++      + +K+L   +            G 
Sbjct: 302 FIPGGVEFKYYSEA-----YFSKVLFVSSGSDGLDQNLVNGGE 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	539
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	100.0
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	100.0
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	100.0
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	100.0
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	100.0
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	100.0
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	100.0
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	100.0
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	100.0
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	100.0
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	100.0
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	100.0
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	100.0
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	100.0
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	100.0
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.96
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.96
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.96
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.95
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.95
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.95
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.95
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.94
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.93
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.93
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.93
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.92
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.92
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.91
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.91
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.9
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.87
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.86
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.85
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.83
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.81
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.75
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.73
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.71
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.71
1sef_A	274	Conserved hypothetical protein; structural genomic	99.7
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.7
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.69
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.63
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.6
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.58
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.57
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.27
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.01
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	99.0
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.0
1v70_A	105	Probable antibiotics synthesis protein; structural	99.0
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	98.99
3h8u_A	125	Uncharacterized conserved protein with double-STR	98.99
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	98.98
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	98.96
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	98.95
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	98.95
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.93
1v70_A	105	Probable antibiotics synthesis protein; structural	98.92
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	98.92
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	98.9
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.89
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	98.89
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	98.89
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.87
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	98.87
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	98.85
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.85
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	98.83
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.83
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	98.83
2l37_A	43	Ribosome-inactivating protein luffin P1; hydrolase	98.82
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	98.79
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.79
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.78
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.78
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.78
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.76
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.75
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.75
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.75
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.75
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	98.75
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.75
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.75
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.73
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.73
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.72
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.71
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.7
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	98.7
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.69
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.69
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.69
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.69
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.68
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.68
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.68
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.67
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.67
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.66
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.66
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	98.64
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.62
2l37_A	43	Ribosome-inactivating protein luffin P1; hydrolase	98.62
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.62
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.61
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.61
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.61
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.6
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.59
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.58
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	98.57
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.57
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.56
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.56
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.56
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.55
1sef_A	274	Conserved hypothetical protein; structural genomic	98.54
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.53
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.51
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.51
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.49
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.48
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.48
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.45
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.45
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.44
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.41
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.4
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.37
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.37
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.36
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.35
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.34
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.32
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.32
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.31
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.31
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.31
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.29
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.28
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.28
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.27
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.26
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.25
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.25
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.21
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	98.2
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.16
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.16
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.05
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.96
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	97.96
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	97.92
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.88
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.86
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	97.82
3bcw_A	123	Uncharacterized protein; structural genomics, join	97.82
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	97.72
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	97.64
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	97.61
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	97.59
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	97.55
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	97.55
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	97.5
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	97.48
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	97.48
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	97.47
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	97.46
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	97.44
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	97.44
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	97.36
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	97.3
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.3
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.28
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	97.23
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.2
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	97.03
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	97.03
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	96.98
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	96.97
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	96.93
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	96.91
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	96.72
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	96.69
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	96.67
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	96.62
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	96.58
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	96.5
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	96.44
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	96.42
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	96.4
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	96.38
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	96.37
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	96.34
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	96.32
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	96.31
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	96.3
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	96.3
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	96.3
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	96.16
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	96.12
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	95.92
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	95.91
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	95.91
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	95.74
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	95.67
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	95.52
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	95.49
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	95.47
2lqx_A	41	Trypsin inhibitor BWI-2C; helical hairpin, hydrola	94.34
4diq_A	489	Lysine-specific demethylase NO66; structural genom	95.32
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	95.3
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	95.16
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	95.08
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	95.08
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	95.06
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	95.04
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	95.03
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	94.91
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	94.91
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	94.67
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	94.54
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	94.44
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	94.29
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	94.2
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	94.02
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	93.72
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	93.58
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	93.27
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	93.23
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	93.14
4diq_A	489	Lysine-specific demethylase NO66; structural genom	92.96
3kv5_D	488	JMJC domain-containing histone demethylation prote	92.89
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	92.87
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	92.77
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	92.73
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	92.54
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	92.53
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	92.48
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	92.44
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	92.38
3uss_A	211	Putative uncharacterized protein; cupin, three his	92.32
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	92.32
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	92.26
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	92.2
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	91.82
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	91.8
3kv9_A	397	JMJC domain-containing histone demethylation prote	91.7
3uss_A	211	Putative uncharacterized protein; cupin, three his	91.43
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	91.09
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	90.9
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	90.69
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	90.65
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	90.55
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	90.37
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	90.1
3kv5_D	488	JMJC domain-containing histone demethylation prote	89.79
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	89.43
1xe7_A	203	YML079WP, hypothetical 22.5 kDa protein in TUB1-CP	89.4
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	88.89
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	88.78
2lqx_A	41	Trypsin inhibitor BWI-2C; helical hairpin, hydrola	88.26
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	88.49
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	87.5
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	87.5
3kv9_A	397	JMJC domain-containing histone demethylation prote	87.41
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	87.09
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	86.46
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	86.1
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	86.07
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	84.94
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	84.07
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	84.02
2rg4_A	216	Uncharacterized protein; rhodobacterales, oceanico	84.02
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	83.62
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	83.06
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	82.99
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	82.82
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	82.63
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	81.02

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=100.00  E-value=6.7e-76  Score=625.09  Aligned_cols=350  Identities=40%  Similarity=0.718  Sum_probs=306.2

Q ss_pred             ccCCCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEe
Q 039441          159 EENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVS  238 (539)
Q Consensus       159 ~~~~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~  238 (539)
                      +.+|||||++++|+++|+||+|+|++|++||+++++|+||.+|+|+.++|+|+||++|||.||++|+||++|+|++|+|+
T Consensus         2 ~~~~p~~f~~~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~   81 (418)
T 3s7i_A            2 SRNNPFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVAN   81 (418)
T ss_dssp             -CCCTTEECGGGEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEEC
T ss_pred             CCCCCcccccccccceEEcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEe
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCcee-----------------------------
Q 039441          239 HERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRV-----------------------------  289 (539)
Q Consensus       239 pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~~-----------------------------  289 (539)
                      +++..+++|++||||+||+|++|||+|+|+++.|+|+++++++++||.|..                             
T Consensus        82 ~~~~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~~s~~~gf~~evLa~af~v~~  161 (418)
T 3s7i_A           82 GNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEF  161 (418)
T ss_dssp             SSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSCCCGGGGSCHHHHHHHHTSCH
T ss_pred             cCCEEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcchhHHhhcCCHHHHHHHHCcCH
Confidence            999999999999999999999999999988889999999998888865432                             


Q ss_pred             --------cc--------------------ccCccEEEcChhhhhhcCccccccCCCC-C---CCCcceecCCCCCcccC
Q 039441          290 --------QQ--------------------RQQGTIKRASQEQLKALSHHASSRRRHG-R---GSTAPFNLLSRKPIYNN  337 (539)
Q Consensus       290 --------~~--------------------q~~G~Ivrv~~eql~~l~~~~~~~~~~~-~---~~~~~fnl~~~~p~~sn  337 (539)
                              ++                    +.+|.|+++++++++.|+++++++++.+ .   ..+++|||.+++|.|+|
T Consensus       162 ~~v~kl~~~~~~~~~~~~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~nl~~~~p~~~n  241 (418)
T 3s7i_A          162 NEIRRVLLEENAGGEQEERGQRRWSTRSSENNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSN  241 (418)
T ss_dssp             HHHHHHTTSCC--------------------CCCSEEECCHHHHHHHHTTCBC--------CTTCCCCEETTCSCCSEEE
T ss_pred             HHHHhhhcccccccccccccccccccccccccCCceEEcChhhhhhccccccccCCCCcCcccCCCcccccccCCCceeC
Confidence                    11                    2479999999999999987765432211 1   24789999999999999


Q ss_pred             CCceEEEeCCccc-ccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhH---H
Q 039441          338 NFGRFFEATPKDY-QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQE---E  413 (539)
Q Consensus       338 ~~G~i~~~~~~~f-P~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~---~  413 (539)
                      .+|+++++++.+| |+|++++|++++++|.||||++|||||+|++|+||++|+|+++||+|+++..+++  +++++   +
T Consensus       242 ~~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~--~~~~~~~~~  319 (418)
T 3s7i_A          242 NFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRG--RREEEEDED  319 (418)
T ss_dssp             TTEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC----------------
T ss_pred             CCCeEEEechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCcccccc--ccccccccc
Confidence            9999999999999 9999999999999999999999999999999999999999999999987631111  11111   1


Q ss_pred             HHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCcccccccc-chhcccCcHHHHHHHcCC
Q 039441          414 EEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGK-INIMNQVERETMEVAFNV  492 (539)
Q Consensus       414 ~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~-~svL~~~p~evLa~AF~v  492 (539)
                      +++++..++|++++.+|++|||||||+||+||++|++  +|+||+|.+++++|.+++|||+ +|||++||++|||+||++
T Consensus       320 ~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--~l~~v~f~~~~~~~~~~~LAG~~~sv~~~~~~evla~af~v  397 (418)
T 3s7i_A          320 EEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS--ELHLLGFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPG  397 (418)
T ss_dssp             -----CCEEEEEEEEEECTTCEEEECTTCCEEEEESS--CEEEEEEEESCTTCCEEESSSSTTBHHHHSCHHHHHHHSSS
T ss_pred             cccccccccceEEEeeeCCCCEEEECCCCEEEEECCC--CEEEEEEEcCCCCCcceEccCchhhhhhcCCHHHHHHHhCC
Confidence            1233346788999999999999999999999999974  4999999999989999999998 599999999999999999


Q ss_pred             CHHHHHHhhcCCCCceeEecC
Q 039441          493 PARLIERVFGTNPKESYFVAG  513 (539)
Q Consensus       493 s~e~v~kL~~~q~e~~~fv~~  513 (539)
                      +.++|++|+.+|+++ +|+++
T Consensus       398 ~~~~v~~L~~~q~e~-~~~~~  417 (418)
T 3s7i_A          398 SGEQVEKLIKNQKES-HFVSA  417 (418)
T ss_dssp             CHHHHHHHHHTCCSC-SEEEC
T ss_pred             CHHHHHHHHhcCCcc-eeecC
Confidence            999999999999998 99976

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=100.00  E-value=1.4e-73  Score=612.10  Aligned_cols=365  Identities=35%  Similarity=0.670  Sum_probs=291.5

Q ss_pred             CcccccCCCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEE
Q 039441          155 SEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVI  234 (539)
Q Consensus       155 ~e~~~~~~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i  234 (539)
                      +++++..|||+|+..+|++++++++|.|++|..|+.+++.|.++.++.++.++++|+++++|||+++++|+||++|+|++
T Consensus        40 ~~~~~~~~p~vf~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v  119 (445)
T 2cav_A           40 EESRAQNNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAIL  119 (445)
T ss_dssp             ------CCTTEECGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEEEESSEEEEEEEESEEEE
T ss_pred             cccCCCCCCeEEchhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCcCCCCceEEEEEeCEEEE
Confidence            36677899999999999889999999999999999998999998889999999999999999999999999999999999


Q ss_pred             EEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCce---e----------------------
Q 039441          235 TLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFR---V----------------------  289 (539)
Q Consensus       235 ~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~---~----------------------  289 (539)
                      +++++++.++++|++||||+||+|++|||+|+|++++|++|++++++++||+|.   +                      
T Consensus       120 ~~v~~~~~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~~~~~~~~~~~vLa~af  199 (445)
T 2cav_A          120 VLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASY  199 (445)
T ss_dssp             EEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHH
T ss_pred             EEEeCCCCEEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCchhhhhhcCCHHHHHHHh
Confidence            999999999999999999999999999999998668999999999998887543   1                      


Q ss_pred             ------------ccccCccEEEcChhhhhhcCcccccc-CCCCCCCCcceecCCCCCcccCCCceEEEeCCccccccccc
Q 039441          290 ------------QQRQQGTIKRASQEQLKALSHHASSR-RRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEI  356 (539)
Q Consensus       290 ------------~~q~~G~Ivrv~~eql~~l~~~~~~~-~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l  356 (539)
                                  ..+++|.|++++.++++.+.+++++. +.+......+|||.+++|+|+|.+|+++++++.+||+|+++
T Consensus       200 ~v~~~~v~~l~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~p~~~~~~G~v~~~~~~~fP~L~~l  279 (445)
T 2cav_A          200 DSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDL  279 (445)
T ss_dssp             TSCHHHHHHHTTSCCSSSSEEECCCC--------------------CCCEETTSSCCSEESSSEEEEEECTTTCHHHHHH
T ss_pred             CCCHHHHHhhhcccCCCCcEEEeCCcchhhhcccccccCCCCCCCcccceeccccCCCccCCCceEEEeChHHCcccccC
Confidence                        12356999999988877776654322 23334457799999999999999999999999999999999


Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +|++++++|+||||++|||||+|++|+||++|+|+|+||++++..             ++++.+..|++++.+|++||||
T Consensus       280 ~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~-------------~~~~~g~~~~~~~~~l~~GdV~  346 (445)
T 2cav_A          280 DILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQ-------------QQGLESMQLRRYAATLSEGDII  346 (445)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC------------------------CCEEEEEEECTTCEE
T ss_pred             CCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcc-------------cccccCcceEEEEeEecCCcEE
Confidence            999999999999999999999999999999999999999998631             0112244567899999999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccc-cchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCCh
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPE  515 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG-~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~  515 (539)
                      |||+||+|+++|+  +++.|++|.++++++.+++||| .++||++||++||++||+++.++|++|+.+++++ +|+++|+
T Consensus       347 vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e~-~~~~~~~  423 (445)
T 2cav_A          347 VIPSSFPVALKAA--SDLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKES-YFVDGQP  423 (445)
T ss_dssp             EECTTCCEEEEES--SSEEEEEEEESCTTCCEEESSSSTTBSGGGSCHHHHHHHSSSCHHHHHHHHHHCCSC-SEEECC-
T ss_pred             EEcCCcEEEEEcC--CCeEEEEEEccCCCCCcEEcccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCcc-EEeCCch
Confidence            9999999999998  4699999999998999999999 8999999999999999999999999999999987 8999988


Q ss_pred             hhhhhccccCCCCccccccc
Q 039441          516 EQQQRDEAGSGKSLPSILDI  535 (539)
Q Consensus       516 ~~~~~~~~~~~~~~~~~l~~  535 (539)
                      ++++++.++++++|+|||++
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~  443 (445)
T 2cav_A          424 RHIDAGGKARRAHLPNLFRT  443 (445)
T ss_dssp             --------------------
T ss_pred             hhhhhhccCCCCcchHhhhh
Confidence            88677777788889999995

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=100.00  E-value=2.3e-72  Score=598.59  Aligned_cols=365  Identities=40%  Similarity=0.728  Sum_probs=302.7

Q ss_pred             cccCCCceee-cCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEE
Q 039441          158 EEENNPYYFH-SQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITL  236 (539)
Q Consensus       158 ~~~~~py~f~-~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~  236 (539)
                      |+.+|||+|+ .++|.+++++++|.|++|..|+.++++|.+..++.++.++|+|+++++|||+++++|+||++|+|++++
T Consensus         5 ~~~~~p~~f~~~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~   84 (416)
T 1uij_A            5 EDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTL   84 (416)
T ss_dssp             CTTSCTTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEE
T ss_pred             ccCCCCeEecccccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEE
Confidence            4568999999 999999999999999999999998899998888999999999999999999999999999999999999


Q ss_pred             EeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCce---e------------------------
Q 039441          237 VSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFR---V------------------------  289 (539)
Q Consensus       237 v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~---~------------------------  289 (539)
                      |++++.++++|++||||+||+|++||++|+|++++|++|+++++.++||+|.   +                        
T Consensus        85 v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v  164 (416)
T 1uij_A           85 VNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHS  164 (416)
T ss_dssp             ECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTS
T ss_pred             EECCCCeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcccchhhhcCCHHHHHHHhCc
Confidence            9999999999999999999999999999996579999999999888776552   1                        


Q ss_pred             ----------ccc-----cCccEEEcChhhhhhcCcccccc-CCCCCCCCcceecCCCCCcccCCCceEEEeCCcccccc
Q 039441          290 ----------QQR-----QQGTIKRASQEQLKALSHHASSR-RRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL  353 (539)
Q Consensus       290 ----------~~q-----~~G~Ivrv~~eql~~l~~~~~~~-~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L  353 (539)
                                +++     ++|.|++++++++..++.++++. +.+......+|||.+++|.|+|.+|+++++++.+||+|
T Consensus       165 ~~~~v~~l~~~~~~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~p~~~~~~G~~~~~~~~~~P~L  244 (416)
T 1uij_A          165 EFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQL  244 (416)
T ss_dssp             CHHHHHHHHTCTTCGGGSBSSSEEECCHHHHHHHTSSCBCCCGGGGGCSSSCEETTSSCCSEECSSEEEEEECTTTCHHH
T ss_pred             CHHHHHhhhhccccccccCcceEEEeCCcccchhhhcccccCCCCCCCcccceeccccCCCccCCCceEEEEChHHCccc
Confidence                      112     36999999988888776654322 23334567899999999999999999999999999999


Q ss_pred             cccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCC
Q 039441          354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG  433 (539)
Q Consensus       354 ~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G  433 (539)
                      ++++|++++++|+||||++|||||+|++|+||++|+|+|+||+++++.      +++    ++++....|++++.+|++|
T Consensus       245 ~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~------~~~----~~~~~~~~~~~~~~~l~~G  314 (416)
T 1uij_A          245 RDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQ------QKQ----KQEEEPLEVQRYRAELSED  314 (416)
T ss_dssp             HHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC----------------------CCEEEEEEEEETT
T ss_pred             hhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCcc------ccc----cccccccceEEEEEEecCC
Confidence            999999999999999999999999999999999999999999998732      011    1223345678999999999


Q ss_pred             cEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccc-cchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEec
Q 039441          434 VVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVA  512 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG-~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~  512 (539)
                      ||||||+|++||++|+  ++|.||+|+++++++.+++||| .++||++||++||++||+++.++|++|+.+++++ +|++
T Consensus       315 dv~vvP~g~~h~~~n~--~~~~~l~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~~~~~~v~~l~~~~~~~-~~~~  391 (416)
T 1uij_A          315 DVFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRES-YFVD  391 (416)
T ss_dssp             CEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBSGGGSCHHHHHHHSSSCHHHHHHHTTSCCSC-SEEE
T ss_pred             cEEEECCCCeEEEEcC--CCeEEEEEEcCCCCCcceecccchhhHHHhCCHHHHHHHHCcCHHHHHHHHhcCCcc-EEEC
Confidence            9999999999999998  5799999999998999999999 7999999999999999999999999999999887 8999


Q ss_pred             CChhhhhhccccCCCCccccccc
Q 039441          513 GPEEQQQRDEAGSGKSLPSILDI  535 (539)
Q Consensus       513 ~p~~~~~~~~~~~~~~~~~~l~~  535 (539)
                      +++++++++.++++++|+|||+|
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~  414 (416)
T 1uij_A          392 AQPQQKEEGSKGRKGPFPSILGA  414 (416)
T ss_dssp             C----------------------
T ss_pred             CcccccccccccCCCchhhhhhh
Confidence            99887677777788889999995

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=100.00  E-value=2.9e-72  Score=600.50  Aligned_cols=365  Identities=40%  Similarity=0.721  Sum_probs=308.3

Q ss_pred             ccccCCCceeecCc-cceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEE
Q 039441          157 EEEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVIT  235 (539)
Q Consensus       157 ~~~~~~py~f~~~~-f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~  235 (539)
                      +++.+|||+|++++ |++++++++|.|++|..|+.+++.|.++.++.++.++|+|+++++|||++|++|+||++|+|+++
T Consensus        16 ~~~~~~p~~f~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~   95 (434)
T 2ea7_A           16 SSGKNNPFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLT   95 (434)
T ss_dssp             ECGGGCTTEECTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEE
T ss_pred             cccCCCCeEEeccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCccCCCceEEEEEecEEEEE
Confidence            56678999999999 99999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             EEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCce---e-----------------------
Q 039441          236 LVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFR---V-----------------------  289 (539)
Q Consensus       236 ~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~---~-----------------------  289 (539)
                      ++++++.++++|++||||+||+|++||++|+|++++|++|++++++++||+|.   +                       
T Consensus        96 ~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~  175 (434)
T 2ea7_A           96 LVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFD  175 (434)
T ss_dssp             EECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHT
T ss_pred             EEeCCCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcchhhhhhcCCHHHHHHHhC
Confidence            99999999999999999999999999999998678999999999888876542   1                       


Q ss_pred             ---------c--c----------ccCccEEEcChhhhhhcCcccccc-CCCCCCCCcceecCCCCCcccCCCceEEEeCC
Q 039441          290 ---------Q--Q----------RQQGTIKRASQEQLKALSHHASSR-RRHGRGSTAPFNLLSRKPIYNNNFGRFFEATP  347 (539)
Q Consensus       290 ---------~--~----------q~~G~Ivrv~~eql~~l~~~~~~~-~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~  347 (539)
                               .  +          |++|.|++++.++++.+.+++++. +.+......+|||.+++|.|+|.+|+++++++
T Consensus       176 v~~~~v~~l~~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~p~~~~~gG~v~~~~~  255 (434)
T 2ea7_A          176 SDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQELMKHAKSSSRKELSSQDEPFNLRNSKPIYSNKFGRWYEMTP  255 (434)
T ss_dssp             SCHHHHHHHHTCC---------CCCSSSEEECCHHHHHHHHTTSBCCCSSCTTCSSSCEETTSSCCSEEETTEEEEEECT
T ss_pred             CCHHHHHhhhhcccccccccccccccceEEECCcccChhhcccccccCCCCCCCcccceeeccCCCceeCCCcEEEEECh
Confidence                     1  1          136999999998887776654332 33444567899999999999999999999999


Q ss_pred             cccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEE
Q 039441          348 KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKIS  427 (539)
Q Consensus       348 ~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~  427 (539)
                      .+||+|++++|++++++|+||||++|||||+|++|+||++|+|+|+||+++++..+           ++++....|++++
T Consensus       256 ~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~-----------~~~~~~~~~r~~~  324 (434)
T 2ea7_A          256 EKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQ-----------KQQEESLEVQRYR  324 (434)
T ss_dssp             TTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCC-----------TTSCCCEEEEEEE
T ss_pred             hhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccc-----------cccccCcceEEEE
Confidence            99999999999999999999999999999999999999999999999999763200           0111233467899


Q ss_pred             eeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccc-cchhcccCcHHHHHHHcCCCHHHHHHhhcCCCC
Q 039441          428 ANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPK  506 (539)
Q Consensus       428 ~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG-~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e  506 (539)
                      .+|++|||||||+|++||++|+  ++|.||+|+++++++.+++||| .++||++||++||++||+++.++|++|+.++++
T Consensus       325 ~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e  402 (434)
T 2ea7_A          325 AELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQSE  402 (434)
T ss_dssp             EEECTTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBGGGGSCHHHHHHHSSSCHHHHHHHHTTCCS
T ss_pred             EEecCCcEEEECCCCeEEEEcC--CCeEEEEEECCCCCCCceecccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCc
Confidence            9999999999999999999998  4799999999998999999999 799999999999999999999999999999988


Q ss_pred             ceeEecCChhhhh--hccccCCCCccccccc
Q 039441          507 ESYFVAGPEEQQQ--RDEAGSGKSLPSILDI  535 (539)
Q Consensus       507 ~~~fv~~p~~~~~--~~~~~~~~~~~~~l~~  535 (539)
                      + +|++++.++++  ++.++++++|+|||++
T Consensus       403 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (434)
T 2ea7_A          403 S-HFVDAQPEQQQREEGHKGRKGSLSSILGS  432 (434)
T ss_dssp             C-SEEECCCC---------------------
T ss_pred             c-EEECCCchhhhhhhhccCCCCcchHhhhh
Confidence            7 89988665533  3334566779999995

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=100.00  E-value=2.1e-66  Score=549.01  Aligned_cols=340  Identities=34%  Similarity=0.618  Sum_probs=280.3

Q ss_pred             cccccCCCceeecCc-cceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEE
Q 039441          156 EEEEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVI  234 (539)
Q Consensus       156 e~~~~~~py~f~~~~-f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i  234 (539)
                      |+++.+|||+|++++ |++++++++|+|++|+.|+.+++.|.++.+++++.++++|+|+++|||++|++|+||++|+|++
T Consensus         6 ~~~~~~~p~~f~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v   85 (397)
T 2phl_A            6 EEESQDNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAIL   85 (397)
T ss_dssp             -----CCTTEECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEE
T ss_pred             ccccCCCCcEeccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEE
Confidence            456678999999999 9999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             EEEeCCCceeeecCCCcE------EEeCCCCeEEEEecCCCceEEEEEEeccCCCC--CCcee-----------------
Q 039441          235 TLVSHERRESFNMEHGDV------ISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTP--GQFRV-----------------  289 (539)
Q Consensus       235 ~~v~pg~~~~~~v~~GDV------~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~p--g~f~~-----------------  289 (539)
                      |+|+++++.+++|++|||      |+||+|++||++|+|++++|++|+++++.|+|  ..|.+                 
T Consensus        86 ~~v~~~~~~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~~~~~f~L~G~~~~~s~~~~~~~~v  165 (397)
T 2phl_A           86 VLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHI  165 (397)
T ss_dssp             EEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGGSCHHH
T ss_pred             EEEeCCCcEEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCccceeeeccCCCchhHHhhcCCHHH
Confidence            999999999999999999      99999999999999977999999999988765  22322                 


Q ss_pred             -----------------cc--ccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEeCCccc
Q 039441          290 -----------------QQ--RQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDY  350 (539)
Q Consensus       290 -----------------~~--q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~f  350 (539)
                                       ++  |++|.|++++.++++.++.++++        ...+.|.++.|.|+|.+|+++++++.+ 
T Consensus       166 La~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~~~~~~~~~~~~~--------~~~~~l~~~~p~~~n~~G~~~~v~~~~-  236 (397)
T 2phl_A          166 LEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSKHAKS--------SSRKSLSKQDNTIGNEFGNLTERTDNS-  236 (397)
T ss_dssp             HHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTTHHHHHHHHHT--------C---------CEEEETTEEEEEEEETT-
T ss_pred             HHHHhCCCHHHHHhhhhcccccccCceEEcCcccchhhhccCCC--------cccccccccCCcccCCCCeEEEEeecc-
Confidence                             11  14799999998887766543221        123457788899999999999999877 


Q ss_pred             ccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeee
Q 039441          351 QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANL  430 (539)
Q Consensus       351 P~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L  430 (539)
                           ++|++++++|+||||++|||||+|++|+||++|+|+|+||+++++.                 .+..+++++.+|
T Consensus       237 -----l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~-----------------~~~g~~~~~~~l  294 (397)
T 2phl_A          237 -----LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNK-----------------ETLEYESYRAEL  294 (397)
T ss_dssp             -----TTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC-------------------CCSCEEEEEEEE
T ss_pred             -----CCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccc-----------------cCCCceEEEEEe
Confidence                 7899999999999999999999999999999999999999995421                 012247899999


Q ss_pred             CCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccc-cchhcccCc-----HHHHHHHcCCCHHHHHHhhcCC
Q 039441          431 SPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQVE-----RETMEVAFNVPARLIERVFGTN  504 (539)
Q Consensus       431 ~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG-~~svL~~~p-----~evLa~AF~vs~e~v~kL~~~q  504 (539)
                      ++|||||||+|++|+++|++  +|.||+|.++++++..++||| .++||+++|     ++||++||+++.++|++|+.++
T Consensus       295 ~~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~s~~~~~~~laG~~~sv~~~~p~~~~~~eVla~af~v~~~~v~~l~~~~  372 (397)
T 2phl_A          295 SKDDVFVIPAAYPVAIKATS--NVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQ  372 (397)
T ss_dssp             ETTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHHHHHHTTC
T ss_pred             cCCCEEEECCCCeEEEEeCC--CeEEEEEECCCCCCcceecccchhhHHhhCCCccchHHHHHHHhCcCHHHHHHHHhcC
Confidence            99999999999999999995  799999999998999999999 799999999     9999999999999999999999


Q ss_pred             CCceeEecCChhhhhhccccCCCCcc
Q 039441          505 PKESYFVAGPEEQQQRDEAGSGKSLP  530 (539)
Q Consensus       505 ~e~~~fv~~p~~~~~~~~~~~~~~~~  530 (539)
                      +++ +|+++++++ +++.++++++|.
T Consensus       373 ~e~-~i~~~~~~~-~~~~~~~~~~~~  396 (397)
T 2phl_A          373 SGS-YFVDAHHHQ-QEQQKGRKGAFV  396 (397)
T ss_dssp             CCC-SEEECC----------------
T ss_pred             Ccc-EEeCCCccc-chhccccCCCCC
Confidence            887 999998776 446677777653

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=100.00  E-value=4.7e-66  Score=554.00  Aligned_cols=312  Identities=20%  Similarity=0.323  Sum_probs=271.8

Q ss_pred             ceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceee------
Q 039441          172 RYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESF------  245 (539)
Q Consensus       172 ~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~------  245 (539)
                      .++|+||+|.|++   |+.++++|+++ +|+++.++++|+||++|||++|++|+||++|+|++|+|.|+|+++|      
T Consensus        18 ~~~~~se~G~~e~---w~~~~~~L~~~-gvs~~r~~i~p~Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~   93 (466)
T 3kgl_A           18 SHVLKAEAGRIEV---WDHHAPQLRCS-GVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVF   93 (466)
T ss_dssp             SEEEEETTEEEEE---CCTTSHHHHHH-TEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEECCSS
T ss_pred             cceeeCCCcEEEE---ECCCChhhccC-CeEEEEEEECCCCEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhccccc
Confidence            3789999999997   99999999954 5556666669999999999999999999999999999999999875      


Q ss_pred             ------------------------------------------------------ecCCCcEEEeCCCCeEEEEecCCCce
Q 039441          246 ------------------------------------------------------NMEHGDVISVPAGTTYYLSNQDNVDR  271 (539)
Q Consensus       246 ------------------------------------------------------~v~~GDV~~iPaG~~h~i~N~g~~e~  271 (539)
                                                                            +|++||||+||||++|||+|+| +++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g-~e~  172 (466)
T 3kgl_A           94 QPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDG-NQP  172 (466)
T ss_dssp             CCCC-----------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCS-SSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCC-CCc
Confidence                                                                  8999999999999999999999 799


Q ss_pred             EEEEEEeccCCCCCC-------cee----------------------------------------------ccc-cCccE
Q 039441          272 LHVAKLLQPVNTPGQ-------FRV----------------------------------------------QQR-QQGTI  297 (539)
Q Consensus       272 L~iv~l~d~~n~pg~-------f~~----------------------------------------------~~q-~~G~I  297 (539)
                      |+||+++|++|.+++       |.+                                              +++ .+|.|
T Consensus       173 L~~l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~~~G~I  252 (466)
T 3kgl_A          173 LVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNI  252 (466)
T ss_dssp             EEEEEEEESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTCCSCSE
T ss_pred             EEEEEEEcCCCcccccCCceeeeEecCCCccccccccccccccCCCccccCCHHHHHHHhCCCHHHHHHHhccccCceeE
Confidence            999999999886543       221                                              223 37999


Q ss_pred             EEcChhhhhhcCccccccCC--CCCC-------CCcceecC--CCCCcccCCCceEEEeCCcccccccccceeEEEEEEc
Q 039441          298 KRASQEQLKALSHHASSRRR--HGRG-------STAPFNLL--SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEIN  366 (539)
Q Consensus       298 vrv~~eql~~l~~~~~~~~~--~~~~-------~~~~fnl~--~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~  366 (539)
                      |+++ ++|++++|...+.+.  ..++       ....|||.  +++|+|+|.+|+++.+++.+||+|++++|++++++|+
T Consensus       253 v~v~-~~l~~~~p~~~~~~~~~~~~glee~~c~~r~~~Ni~~p~~~d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~  331 (466)
T 3kgl_A          253 IRVQ-GPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIR  331 (466)
T ss_dssp             EECC-SCCCCCCCCC--------------CCSSCCCEEETTCGGGEEEEETTTEEEEEECTTTCTTHHHHTCEEEEEEEE
T ss_pred             EEec-CcccccCCcccccccccccCCccccccceeccccccCcccCCcccCCCceEEEechhhCcccccCceeeEEEEee
Confidence            9998 679999887542210  0111       23467886  6889999999999999999999999999999999999


Q ss_pred             CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441          367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL  446 (539)
Q Consensus       367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i  446 (539)
                      ||||++|||||+|++|+||++|+++|+||++++.                       ++++.+|++|||||||+|++|++
T Consensus       332 pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~-----------------------~~f~~~l~~GDV~v~P~G~~H~~  388 (466)
T 3kgl_A          332 QNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGD-----------------------RVFDGQVSQGQLLSIPQGFSVVK  388 (466)
T ss_dssp             TTEEEEEEEESSCCEEEEEEESEEEEEEECTTSC-----------------------EEEEEEEETTCEEEECTTCEEEE
T ss_pred             cCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCc-----------------------EEEEeEecCCcEEEECCCCeEEE
Confidence            9999999999999999999999999999999863                       57999999999999999999999


Q ss_pred             EcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCCh
Q 039441          447 VASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPE  515 (539)
Q Consensus       447 ~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~  515 (539)
                      . .++++++||+|++++ ++...+|||+++||++||++||++||+++.++|++|+.++++. +|++++.
T Consensus       389 ~-ag~e~~~~l~~f~s~-np~~~~LaG~~s~~~~lP~eVla~aF~v~~~~v~~Lk~~q~e~-~i~~~~~  454 (466)
T 3kgl_A          389 R-ATSEQFRWIEFKTNA-NAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIET-TLTHSSG  454 (466)
T ss_dssp             E-ECSSEEEEEEEESSS-SCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCS-SEEECC-
T ss_pred             E-cCCCCEEEEEEECCC-CCccccccchhhhhhhCCHHHHHHHhCcCHHHHHHHHhccCcc-EEECCCc
Confidence            4 568899999999887 8899999999999999999999999999999999999999987 8887764

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=100.00  E-value=7.7e-66  Score=552.26  Aligned_cols=312  Identities=20%  Similarity=0.361  Sum_probs=266.4

Q ss_pred             ceeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceee----
Q 039441          172 RYRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESF----  245 (539)
Q Consensus       172 ~~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~----  245 (539)
                      .++|+||+|.|++   ||+++++|+  ||+.+|++|   +|+||++|||++|++|+||++|+|++|+|.|+|+++|    
T Consensus        25 ~~~i~se~G~~e~---~d~~~~~l~~~gvs~~R~~i---~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~~   98 (465)
T 3qac_A           25 TNRIQAERGLTEV---WDSNEQEFRCAGVSVIRRTI---EPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYESGS   98 (465)
T ss_dssp             CEEEEETTEEEEE---CCTTSHHHHHHTCEEEEEEE---CTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCC----
T ss_pred             ccceeCCCcEEEE---ECCCChhhcccceEEEEEEE---cCCcCcccEEcCCCEEEEEEECcEEEEEecCCCCceeecch
Confidence            4689999999996   999998888  999999999   9999999999999999999999999999999998766    


Q ss_pred             ----------------------------------ecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCc----
Q 039441          246 ----------------------------------NMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQF----  287 (539)
Q Consensus       246 ----------------------------------~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f----  287 (539)
                                                        +|++||||+||||++||+||+| +++|++|+++|+.|.++++    
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G-~~~lv~v~~~d~~n~~nqld~~~  177 (465)
T 3qac_A           99 QQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNG-DQPLVAVILIDTANHANQLDKNF  177 (465)
T ss_dssp             --------------------------CCCCCCEEEEETTEEEEECTTCEEEEECCS-SSCEEEEEEECTTSTTCCSCSSS
T ss_pred             hccccccccccccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCC-CCCEEEEEEEcCCCccccccccc
Confidence                                              8999999999999999999999 6999999999998765432    


Q ss_pred             ----ee----------------------------------------------------ccc-cCccEEEcChhhhhhcCc
Q 039441          288 ----RV----------------------------------------------------QQR-QQGTIKRASQEQLKALSH  310 (539)
Q Consensus       288 ----~~----------------------------------------------------~~q-~~G~Ivrv~~eql~~l~~  310 (539)
                          .|                                                    +++ .+|.||+|+ ++|++++|
T Consensus       178 ~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv~-~~l~~~~p  256 (465)
T 3qac_A          178 PTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQ-EGLHVIKP  256 (465)
T ss_dssp             CCEEESSSCCCCSCC--------------CCCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC--CCCC----
T ss_pred             ceeEEecCCCccccccccccccccccccccccchhhcCCHHHHHHHhCCCHHHHHHhhhccccceeEEEec-CcccccCC
Confidence                22                                                    112 479999995 66999987


Q ss_pred             ccccc---------C-CCCCCC-------CcceecC--CCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCcee
Q 039441          311 HASSR---------R-RHGRGS-------TAPFNLL--SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMM  371 (539)
Q Consensus       311 ~~~~~---------~-~~~~~~-------~~~fnl~--~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~  371 (539)
                      +..+.         + +..++.       ...+||.  +++|+|++.+|+++++++.+||+|++++|++++++|+||||+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~nglee~~c~~~l~~ni~~p~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~  336 (465)
T 3qac_A          257 PSRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMM  336 (465)
T ss_dssp             ------------------------CTTTSCCEEETTCTTTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEE
T ss_pred             cccchhhhhcccccccccCCCccccccceeccccccccccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEe
Confidence            75421         0 011222       2235553  788999999999999999999999999999999999999999


Q ss_pred             cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441          372 VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN  451 (539)
Q Consensus       372 ~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn  451 (539)
                      +|||||+|++|+||++|+|+|+||++++.                       ++++.+|++|||||||+||+|++.+. +
T Consensus       337 ~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~-----------------------~~f~~~l~~GDVfvvP~g~~h~~~ag-~  392 (465)
T 3qac_A          337 APHYNLNAHNIMYCVRGRGRIQIVNDQGQ-----------------------SVFDEELSRGQLVVVPQNFAIVKQAF-E  392 (465)
T ss_dssp             EEEEESSCCEEEEEEEEEEEEEEECTTSC-----------------------EEEEEEEETTCEEEECTTCEEEEEEE-E
T ss_pred             eeEECCCCCEEEEEEeCCEEEEEEeCCCc-----------------------EEEEEEecCCeEEEECCCcEEEEEcC-C
Confidence            99999999999999999999999999863                       58999999999999999999999864 7


Q ss_pred             CcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCChhh
Q 039441          452 EKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQ  517 (539)
Q Consensus       452 e~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~~~  517 (539)
                      ++++||+|++++ ++...+|||+++||++||++||++||+++.++|++|+.+++++ +|++++.++
T Consensus       393 e~~~~l~f~~s~-np~~~~LaG~~sv~~~ip~eVla~aF~v~~e~v~~Lk~~~~e~-~i~~~~~~~  456 (465)
T 3qac_A          393 DGFEWVSFKTSE-NAMFQSLAGRTSAIRSLPIDVVSNIYQISREEAFGLKFNRPET-TLFRSSGQG  456 (465)
T ss_dssp             EEEEEEEEESST-TCCEEESSSSSBHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSC-SEECCCC--
T ss_pred             CCeEEEEEecCC-CCcccccccchhhhhhCCHHHHHHHhCCCHHHHHHHHhccCcc-EEECCcccc
Confidence            899999999887 8899999999999999999999999999999999999999987 888776554

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=100.00  E-value=1.3e-63  Score=538.60  Aligned_cols=312  Identities=22%  Similarity=0.388  Sum_probs=270.7

Q ss_pred             ceeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceee----
Q 039441          172 RYRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESF----  245 (539)
Q Consensus       172 ~~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~----  245 (539)
                      .++|+||||.|++   |+.+++.|.  ||+.+|++|   +|+||++|||++|++|+||++|+|++|+|.|+|+++|    
T Consensus        21 ~~~~~se~G~~e~---~~~~~~~L~~~gvs~~R~~i---~pggl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~   94 (496)
T 3ksc_A           21 DNRIESEGGLIET---WNPNNKQFRCAGVALSRATL---QRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQ   94 (496)
T ss_dssp             SEEEEETTEEEEE---CCTTSHHHHHHTCEEEEEEE---CTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC-----
T ss_pred             ccccCCCCcEEEe---ccccchhhccCCceEEEEEe---cCCCEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchhhh
Confidence            4799999999997   999999998  999999999   9999999999999999999999999999999988765    


Q ss_pred             ------------------ecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC-------Ccee-----------
Q 039441          246 ------------------NMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG-------QFRV-----------  289 (539)
Q Consensus       246 ------------------~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg-------~f~~-----------  289 (539)
                                        +|++||||+||||++||++|+| +++|++|++||++|..+       .|.|           
T Consensus        95 ~~~~~~~~~~~d~~qk~~~l~~GDV~viPaG~~h~~~N~G-~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~~  173 (496)
T 3ksc_A           95 ESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQ-DTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQY  173 (496)
T ss_dssp             ----------CCCCCCEEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGGG
T ss_pred             hcccccccccccchheeeccCCCCEEEECCCCcEEEEcCC-CCCEEEEEEeccCcccccCCCceeeeEecCCCccccccc
Confidence                              8999999999999999999998 69999999999876411       1211           


Q ss_pred             ----------------------------------------c---c-ccCccEEEcChhhhhhcCcccccc----------
Q 039441          290 ----------------------------------------Q---Q-RQQGTIKRASQEQLKALSHHASSR----------  315 (539)
Q Consensus       290 ----------------------------------------~---~-q~~G~Ivrv~~eql~~l~~~~~~~----------  315 (539)
                                                              -   + +++|.||+|++ +|++|+|.....          
T Consensus       174 ~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~v~~-~l~~~~P~~~~~~~~~~~~~~~  252 (496)
T 3ksc_A          174 QHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKG-GLSIISPPEKQARHQRGSRQEE  252 (496)
T ss_dssp             CC-----------CCSGGGGSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEECSS-CCCCCCCC--------------
T ss_pred             cccccccccccccCCCchhhcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEEecC-cccccCCchhhhchhhcccchh
Confidence                                                    1   1 25799999986 698887654210          


Q ss_pred             -----------------------------CC------------------C-------CCCC-------CcceecC--CCC
Q 039441          316 -----------------------------RR------------------H-------GRGS-------TAPFNLL--SRK  332 (539)
Q Consensus       316 -----------------------------~~------------------~-------~~~~-------~~~fnl~--~~~  332 (539)
                                                   |.                  .       .++.       ...+||.  +.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nGlee~~c~~~l~~Ni~~p~~~  332 (496)
T 3ksc_A          253 DEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGGSQKGKSRRQGDNGLEETVCTAKLRLNIGPSSSP  332 (496)
T ss_dssp             ---------------------------------------------------------------CCSSSCCEEECSTTSCC
T ss_pred             hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCccccccchhhhccccccccC
Confidence                                         00                  0       0111       1356776  778


Q ss_pred             CcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhH
Q 039441          333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQE  412 (539)
Q Consensus       333 p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~  412 (539)
                      |+|+|.+|+++.+++.+||+|++++|++++++|+||||++|||||+|++|+||++|+++|+||++++.            
T Consensus       333 di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~------------  400 (496)
T 3ksc_A          333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGN------------  400 (496)
T ss_dssp             SEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSC------------
T ss_pred             CcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCc------------
Confidence            99999999999999999999999999999999999999999999999999999999999999999863            


Q ss_pred             HHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHcCC
Q 039441          413 EEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNV  492 (539)
Q Consensus       413 ~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~v  492 (539)
                                 ++++.+|++|||||||+|++|++.|. +++++||+|++++ ++..++|||.++||++||++||++||+|
T Consensus       401 -----------~~f~~~l~~GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s~-np~~~~LaG~~sv~~~~p~eVLa~aF~v  467 (496)
T 3ksc_A          401 -----------TVFDGELEAGRALTVPQNYAVAAKSL-SDRFSYVAFKTND-RAGIARLAGTSSVINNLPLDVVAATFNL  467 (496)
T ss_dssp             -----------EEEEEEEETTCEEEECTTCEEEEEEC-SSEEEEEEEESST-TCCEEESSSTTCTTTTSCHHHHHHHHTC
T ss_pred             -----------EEEEEEecCCeEEEECCCCEEEEEeC-CCCEEEEEEECCC-CCccccccchhhhhhhCCHHHHHHHHCc
Confidence                       58889999999999999999999887 7889999999887 8899999999999999999999999999


Q ss_pred             CHHHHHHhhcCCCCceeEecCChhh
Q 039441          493 PARLIERVFGTNPKESYFVAGPEEQ  517 (539)
Q Consensus       493 s~e~v~kL~~~q~e~~~fv~~p~~~  517 (539)
                      +.++|++|+.++++. +|+|++.++
T Consensus       468 ~~~~v~~Lk~~q~e~-~i~~~~~~~  491 (496)
T 3ksc_A          468 QRNEARQLKSNNPFK-FLVPARESE  491 (496)
T ss_dssp             CHHHHHHHHHSCCCS-SEECCCC--
T ss_pred             CHHHHHHHHhcCCcc-EEeCCCCcc
Confidence            999999999999987 999988765

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=100.00  E-value=7.1e-63  Score=530.53  Aligned_cols=311  Identities=18%  Similarity=0.327  Sum_probs=267.5

Q ss_pred             eeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCcee------
Q 039441          173 YRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRES------  244 (539)
Q Consensus       173 ~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~------  244 (539)
                      ++|+||+|.|++   |+.++++|+  ||+.+|++|   +|+||++|||++|++|+||++|+|++|+|+|+|+++      
T Consensus        39 ~~v~se~G~~~~---~~~~~~~l~~~gvs~~r~~i---~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~  112 (459)
T 2e9q_A           39 RRAEAEAGFTEV---WDQDNDEFQCAGVNMIRHTI---RPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLR  112 (459)
T ss_dssp             EEEEETTEEEEE---CCTTSHHHHHHTEEEEEEEE---CTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC
T ss_pred             ceEecCCcEEEe---cCCCChhhccCceEEEEEEE---cCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchh
Confidence            689999999997   999999998  898888877   999999999999999999999999999999999754      


Q ss_pred             ----------------eecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC-------Ccee------------
Q 039441          245 ----------------FNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG-------QFRV------------  289 (539)
Q Consensus       245 ----------------~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg-------~f~~------------  289 (539)
                                      ++|++||||+||||++||++|+| +++|++|+++|+.|.++       +|.+            
T Consensus       113 ~~~~~~~~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N~g-~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~  191 (459)
T 2e9q_A          113 RSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRG-QSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVE  191 (459)
T ss_dssp             -------CCCEEECCCEEEETTEEEEECTTCCEEEEECS-SSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTC
T ss_pred             hccccccccccccceeEEecCCCEEEECCCCCEEEEeCC-CCCEEEEEEecCCCcccccCcccceeeccCCccccchhhh
Confidence                            48999999999999999999998 68999999999877322       1211            


Q ss_pred             ------------------------------------------ccc-cCccEEEcChhhhhhcCcccccc-----------
Q 039441          290 ------------------------------------------QQR-QQGTIKRASQEQLKALSHHASSR-----------  315 (539)
Q Consensus       290 ------------------------------------------~~q-~~G~Ivrv~~eql~~l~~~~~~~-----------  315 (539)
                                                                +++ .+|.||+++++ |+.+.|.....           
T Consensus       192 ~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~~~~-l~~~~P~~~~~e~~~~~~~~~~  270 (459)
T 2e9q_A          192 EWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVDED-FEVLLPEKDEEERSRGRYIESE  270 (459)
T ss_dssp             C------------CCCCTTTTSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEECCSS-CCTTTTC---------------
T ss_pred             ccccccccccccccccchhhcCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEeCCc-ccccCCccchhhhccccccccc
Confidence                                                      122 47899999854 77776642110           


Q ss_pred             ---CCCCCCCCcce----ecC--CCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEE
Q 039441          316 ---RRHGRGSTAPF----NLL--SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVV  386 (539)
Q Consensus       316 ---~~~~~~~~~~f----nl~--~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~  386 (539)
                         +.+......+|    |+.  ++.|+|++.+|+++++++.+||+|++++|++++++|.||||++|||||+|++|+||+
T Consensus       271 ~~~~~g~~e~~~~~~l~~n~~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~  350 (459)
T 2e9q_A          271 SESENGLEETICTLRLKQNIGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYAT  350 (459)
T ss_dssp             ---------CGGGSCCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEE
T ss_pred             ccccCCccccccceeeeecccccccCCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEE
Confidence               01111122344    444  788999999999999999999999999999999999999999999999999999999


Q ss_pred             eceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCC
Q 039441          387 EGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNN  466 (539)
Q Consensus       387 ~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~  466 (539)
                      +|+|+|+||++++.                       ++++.+|++|||||||+|++|+++| ++++++||+|++++ ++
T Consensus       351 ~G~~~v~vv~~~g~-----------------------~~~~~~l~~GDv~v~P~G~~H~~~n-g~~~~~~l~~~~s~-~~  405 (459)
T 2e9q_A          351 RGNARVQVVDNFGQ-----------------------SVFDGEVREGQVLMIPQNFVVIKRA-SDRGFEWIAFKTND-NA  405 (459)
T ss_dssp             EEEEEEEEECTTSC-----------------------EEEEEEEETTCEEEECTTCEEEEEE-EEEEEEEEEEESSS-SC
T ss_pred             eeEEEEEEEeCCCC-----------------------EEEeeEEeCCcEEEECCCCEEEEEe-CCCCeEEEEEecCC-CC
Confidence            99999999999863                       5888899999999999999999999 57889999999888 88


Q ss_pred             ccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCChhh
Q 039441          467 QRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQ  517 (539)
Q Consensus       467 ~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~~~  517 (539)
                      ...+|||+++||+++|++||++||+++.+++++|+.++++. +|++++.++
T Consensus       406 ~~~~laG~~s~~~~~p~~Vla~af~v~~~~v~~l~~~~~e~-~i~~~~~~~  455 (459)
T 2e9q_A          406 ITNLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKYGQQEM-RVLSPGRSQ  455 (459)
T ss_dssp             CEEESSSSSSHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSC-SEECSCC--
T ss_pred             cceeecchhHHHHhCCHHHHHHHHCcCHHHHHHHHhcCCcc-EEeCCCccc
Confidence            99999999999999999999999999999999999999887 899887544

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=100.00  E-value=4.9e-62  Score=526.39  Aligned_cols=311  Identities=19%  Similarity=0.349  Sum_probs=268.3

Q ss_pred             ceeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce------
Q 039441          172 RYRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE------  243 (539)
Q Consensus       172 ~~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~------  243 (539)
                      ..+|+||||.|++   ||++.+.|.  ||+..|+.|   .|+||++|||++|++|+||++|++++|+|.|||++      
T Consensus        23 ~~~i~se~G~~e~---w~~~~p~l~~~Gvs~~R~~i---~p~Gl~lPh~~~a~el~yV~qG~g~~G~v~Pgcpet~~~~~   96 (531)
T 3fz3_A           23 DNRIQAEAGQIET---WNFNQGDFQCAGVAASRITI---QRNGLHLPSYSNAPQLIYIVQGRGVLGAVFSGCPETFEESQ   96 (531)
T ss_dssp             CEEEEETTEEEEE---CCTTSHHHHHHTEEEEEEEE---CTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEECCC
T ss_pred             chhcccCCceEEE---eCCCChhhccCcceEEEEEe---cCCCEeCCccCCCCeEEEEEECcEEEEEEcCCCcccccccc
Confidence            3689999999996   999999999  999999999   99999999999999999999999999999999986      


Q ss_pred             ----------------------------------------------------------------------------eeec
Q 039441          244 ----------------------------------------------------------------------------SFNM  247 (539)
Q Consensus       244 ----------------------------------------------------------------------------~~~v  247 (539)
                                                                                                  +++|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~v  176 (531)
T 3fz3_A           97 QSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRI  176 (531)
T ss_dssp             C-------------------------------------------------------------------CCSCEESCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeecc
Confidence                                                                                        3468


Q ss_pred             CCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC-------Ccee-------------------------------
Q 039441          248 EHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG-------QFRV-------------------------------  289 (539)
Q Consensus       248 ~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg-------~f~~-------------------------------  289 (539)
                      ++||||+||||++|||||+| +++|+||+++|++|..+       .|+|                               
T Consensus       177 r~GDviaiPaG~~~w~yN~G-~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (531)
T 3fz3_A          177 REGDVVAIPAGVAYWSYNDG-DQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQP  255 (531)
T ss_dssp             ETTEEEEECTTCCEEEECCS-SSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC---------------------
T ss_pred             cCCcEEEECCCCeEEEEeCC-CceEEEEEEEccccccccCCCccceeEEcCCCccccccccccccccccccccccccccc
Confidence            99999999999999999998 58999999999876421       1111                               


Q ss_pred             ----------------------------------------ccc-cCccEEEcChhhhhhcCccccc-----------cCC
Q 039441          290 ----------------------------------------QQR-QQGTIKRASQEQLKALSHHASS-----------RRR  317 (539)
Q Consensus       290 ----------------------------------------~~q-~~G~Ivrv~~eql~~l~~~~~~-----------~~~  317 (539)
                                                              +++ .+|.||||+ ++|++|+|....           .+.
T Consensus       256 ~~~~~~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~kLq~~~~~rg~IVrv~-~~l~~~~P~~~~~~~~~~~~~~~~~~  334 (531)
T 3fz3_A          256 FGRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQIIQVR-GNLDFVQPPRGRQEREHEERQQEQLQ  334 (531)
T ss_dssp             -----------CCSSGGGGSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEEECS-SSCCCSCCC-----------------
T ss_pred             ccccchhhhcccCCCeeecCCHHHHHHHHCCCHHHHHHHhcccccCceEEEec-CCCcccCCchhhhhhhhccccccccc
Confidence                                                    122 479999997 569999876421           000


Q ss_pred             ------C----CCC-------CCcceecC--CCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCC
Q 039441          318 ------H----GRG-------STAPFNLL--SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSK  378 (539)
Q Consensus       318 ------~----~~~-------~~~~fnl~--~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpn  378 (539)
                            .    .++       .+.+|||.  +++|++++.+|+++++++.+||+|++++|++++++|.||||++|||||+
T Consensus       335 ~~~~~~~~~~~~nGleet~c~~rl~~Ni~~ps~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~  414 (531)
T 3fz3_A          335 QERQQQGEQLMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVN  414 (531)
T ss_dssp             -------------CGGGTGGGCCCEEECCCGGGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESS
T ss_pred             ccccccccccCCCCcccccccceeeeccCCcccCCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCC
Confidence                  0    122       23468887  7889999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEE
Q 039441          379 ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       379 A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~  458 (539)
                      |++|+||++|+++|+||++++.                       ++++.+|++|||||||+|++|++.+. +++++|++
T Consensus       415 A~Ei~yVl~G~~rv~~V~~~G~-----------------------~v~~~~L~~GDV~v~P~G~~H~~~ag-~e~l~fla  470 (531)
T 3fz3_A          415 AHSVVYVIRGNARVQVVNENGD-----------------------AILDQEVQQGQLFIVPQNHGVIQQAG-NQGFEYFA  470 (531)
T ss_dssp             CCEEEEEEEEEEEEEEECTTSC-----------------------EEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEE
T ss_pred             CCEEEEEEeCcEEEEEEeCCCc-----------------------EEEEEEecCCeEEEECCCCeEEEecC-CCCEEEEE
Confidence            9999999999999999999863                       57899999999999999999998865 78899999


Q ss_pred             EeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCChh
Q 039441          459 FSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEE  516 (539)
Q Consensus       459 F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~~  516 (539)
                      |.++. ++..++|||+++||++||++||++||+|+.++|++|+.+++++ +||.+|..
T Consensus       471 F~ss~-np~~~~LaG~~svf~~lP~eVLa~aF~v~~e~v~kLk~~~~es-~i~~pp~~  526 (531)
T 3fz3_A          471 FKTEE-NAFINTLAGRTSFLRALPDEVLANAYQISREQARQLKYNRQET-IALSSSQQ  526 (531)
T ss_dssp             EESST-TCCEEESSSTTCHHHHSCHHHHHHHHTCCHHHHHHHHHSCCCS-SEECC---
T ss_pred             EecCC-CCcceeccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhcCCCc-eEECCCCC
Confidence            98775 8888999999999999999999999999999999999999987 77777654

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=100.00  E-value=1.5e-59  Score=506.97  Aligned_cols=311  Identities=21%  Similarity=0.403  Sum_probs=266.3

Q ss_pred             eeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce-------
Q 039441          173 YRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE-------  243 (539)
Q Consensus       173 ~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~-------  243 (539)
                      ++|+||+|.|++   |+.+++.|+  ||+.+|++|   +|+||++|||++|++|+||++|+|++|+|+|+|++       
T Consensus        24 ~~v~se~G~~e~---~~~~~~~l~~~gvs~~r~~l---~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~   97 (476)
T 1fxz_A           24 NRIESEGGLIET---WNPNNKPFQCAGVALSRCTL---NRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQ   97 (476)
T ss_dssp             CEEEETTEEEEE---CCTTSHHHHHHTCEEEEEEE---CTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------
T ss_pred             eEEecCCceEEe---eCCCChhhccCceEEEEEEE---cCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhcccc
Confidence            689999999997   999999998  899888877   99999999999999999999999999999999974       


Q ss_pred             ----------------eeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC-------Ccee-----------
Q 039441          244 ----------------SFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG-------QFRV-----------  289 (539)
Q Consensus       244 ----------------~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg-------~f~~-----------  289 (539)
                                      +++|++||||+||||++||++|+| +++|++|+++|+.|..+       .|.+           
T Consensus        98 ~~~~~~~~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G-~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~  176 (476)
T 1fxz_A           98 PQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNE-DTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKY  176 (476)
T ss_dssp             ------------CCCCEEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHH
T ss_pred             ccccccccccccccceEEEEeCCCEEEECCCCcEEEEeCC-CCCEEEEEEecCCCcccccCCccceeeccCCcccccccc
Confidence                            578999999999999999999999 68999999999877422       1211           


Q ss_pred             -------------------------------------------------cccc---CccEEEcChhhhhhcCccccc-c-
Q 039441          290 -------------------------------------------------QQRQ---QGTIKRASQEQLKALSHHASS-R-  315 (539)
Q Consensus       290 -------------------------------------------------~~q~---~G~Ivrv~~eql~~l~~~~~~-~-  315 (539)
                                                                       +++.   +|.||+++++ ++.++|.... . 
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~v~~~-l~~~~P~~~~~e~  255 (476)
T 1fxz_A          177 QQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGG-LSVIKPPTDEQQQ  255 (476)
T ss_dssp             HC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSSC-CCCCCC-------
T ss_pred             ccccccccccccccccccccccchhhhcCCHHHHHhhhCCCHHHHHhhhccccccccccEEEeCCc-ccccCCccchhhh
Confidence                                                             2233   7999999754 7777663210 0 


Q ss_pred             -------------CC-----------------C-CCC---CCcceec----C--CCCCcccCCCceEEEeCCcccccccc
Q 039441          316 -------------RR-----------------H-GRG---STAPFNL----L--SRKPIYNNNFGRFFEATPKDYQQLQE  355 (539)
Q Consensus       316 -------------~~-----------------~-~~~---~~~~fnl----~--~~~p~~sn~~G~i~~~~~~~fP~L~~  355 (539)
                                   +.                 + .++   ...+|+|    .  ++.|+|++.+|+++++++.+||+|++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~e~~~~~~l~~ni~~~~~~~~~~~~gG~v~~~~~~~~P~L~~  335 (476)
T 1fxz_A          256 RPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSW  335 (476)
T ss_dssp             -----------------------------------------CTTCCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGTT
T ss_pred             ccccchhhhhcccccccccccccccccccccccccCCccccccceeeeccccccccCCcccCCCeEEEEeccccCccccc
Confidence                         00                 0 011   1124444    3  77889999999999999999999999


Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      ++|++++++|.||||+.|||||+|++|+||++|+++++|++++|.                       ++++..|++|||
T Consensus       336 l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~-----------------------~~~~~~l~~GDv  392 (476)
T 1fxz_A          336 LRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE-----------------------RVFDGELQEGRV  392 (476)
T ss_dssp             TTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSC-----------------------EEEEEEEETTCE
T ss_pred             CcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCC-----------------------EEeeeEEcCCCE
Confidence            999999999999999999999999999999999999999999762                       477888999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCCh
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPE  515 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~  515 (539)
                      +|||+|++|++.| ++++++|++|.+++ ++...+|||+++||++||++||++||+++.++|++|+.++.+. +|+|++.
T Consensus       393 ~viP~G~~H~~~n-g~~~l~~l~f~~s~-~p~~~~laG~~s~~~~~p~~Vla~af~~~~~~v~~l~~~~~e~-~i~~p~~  469 (476)
T 1fxz_A          393 LIVPQNFVVAARS-QSDNFEYVSFKTND-TPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFK-FLVPPQE  469 (476)
T ss_dssp             EEECTTCEEEEEE-CSTTEEEEEEESSS-SCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCS-SEECCCC
T ss_pred             EEECCCCeEEEEe-CCCCEEEEEEECCC-CCceeEccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhhCCCc-EEeCCcc
Confidence            9999999999999 68899999999887 8888999999999999999999999999999999999998887 8998876


Q ss_pred             hh
Q 039441          516 EQ  517 (539)
Q Consensus       516 ~~  517 (539)
                      ++
T Consensus       470 ~~  471 (476)
T 1fxz_A          470 SQ  471 (476)
T ss_dssp             C-
T ss_pred             cc
Confidence            54

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=100.00  E-value=3.5e-59  Score=505.92  Aligned_cols=312  Identities=21%  Similarity=0.394  Sum_probs=264.8

Q ss_pred             ceeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce------
Q 039441          172 RYRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE------  243 (539)
Q Consensus       172 ~~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~------  243 (539)
                      ..+|+||+|.|++   |+.+++.|+  ||+..|++|   +|+||++|||++|++|+||++|+|++|+|.|+|++      
T Consensus        23 ~~~~~se~G~~e~---~~~~~~~l~~~gvs~~r~~i---~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~   96 (510)
T 3c3v_A           23 DNRIESEGGYIET---WNPNNQEFECAGVALSRLVL---RRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPA   96 (510)
T ss_dssp             CEEEEETTEEEEE---CCTTSHHHHHHTCEEEEEEE---CTTEEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEEEC
T ss_pred             hhhhccCCceEEE---eCCCCcccccCcEEEEEEEE---CCCCCccceecCCCeEEEEEeCEEEEEEEeCCCcccccccc
Confidence            3699999999996   999999987  888777777   99999999999999999999999999999999853      


Q ss_pred             ------------------------------eeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCC-------
Q 039441          244 ------------------------------SFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQ-------  286 (539)
Q Consensus       244 ------------------------------~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~-------  286 (539)
                                                    +++|++||||+||||++||+||+| +++|++|+++|+.|.+++       
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g-~~~l~~v~~~d~~n~~nqld~~~r~  175 (510)
T 3c3v_A           97 QQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDH-DTDVVAVSLTDTNNNDNQLDQFPRR  175 (510)
T ss_dssp             CC--------------------CEEEEESCCEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTBTTCCSCSCCCC
T ss_pred             ccccccccccccccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCC-CCCEEEEEEeCCCCcccccccccce
Confidence                                          378999999999999999999999 699999999999875432       


Q ss_pred             cee-----------------------------------------------------------------------------
Q 039441          287 FRV-----------------------------------------------------------------------------  289 (539)
Q Consensus       287 f~~-----------------------------------------------------------------------------  289 (539)
                      |.|                                                                             
T Consensus       176 F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~~~La~af  255 (510)
T 3c3v_A          176 FNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFLAQAF  255 (510)
T ss_dssp             EESSCCCCCTTGGGCC------------------------------------------------CCTGGGSCHHHHHHHH
T ss_pred             eEecCCcccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceecCCHHHHHHHh
Confidence            211                                                                             


Q ss_pred             ------------ccc---cCccEEEcChhhhhhcCcccc--------c-----c--CC--------C--CCC---CCcce
Q 039441          290 ------------QQR---QQGTIKRASQEQLKALSHHAS--------S-----R--RR--------H--GRG---STAPF  326 (539)
Q Consensus       290 ------------~~q---~~G~Ivrv~~eql~~l~~~~~--------~-----~--~~--------~--~~~---~~~~f  326 (539)
                                  +.+   .+|.||+++ +.|+.++|...        .     .  +.        .  .++   ...+|
T Consensus       256 ~v~~~~~~~~l~~~~~~~~~g~Iv~v~-~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~e~~c~~  334 (510)
T 3c3v_A          256 QVDDRQIVQNLRGENESEEQGAIVTVR-GGLRILSPDRKRGADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTA  334 (510)
T ss_dssp             TCCCHHHHHHHTTTTCCTTSCSEEECT-TCCCCCCC-----------------------------------CTTTTGGGC
T ss_pred             CCCHHHHHHHhhccccccccccEEEeC-CcccccCCchhccccchhhhhhhhccccccccccccccccccCCccccccce
Confidence                        112   378999997 44887766421        0     0  00        0  012   11244


Q ss_pred             ec----C--CCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCC
Q 039441          327 NL----L--SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSS  400 (539)
Q Consensus       327 nl----~--~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs  400 (539)
                      +|    .  ++.|+|++.+|+++++++.+||+|++++|++++++|.||||+.|||||+|++|+||++|+++|+|++++|.
T Consensus       335 ~l~~ni~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~  414 (510)
T 3c3v_A          335 TVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGN  414 (510)
T ss_dssp             CCEEECSSCSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSC
T ss_pred             eeeeccCccccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCC
Confidence            44    3  77888999999999999999999999999999999999999999999999999999999999999999762


Q ss_pred             ccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhccc
Q 039441          401 RWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQ  480 (539)
Q Consensus       401 ~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~  480 (539)
                                             ++++..|++|||||||+|++|++.| +++++.|++|.+++ ++...+|||+++||++
T Consensus       415 -----------------------~~~~~~l~~GDv~viP~G~~H~~~N-g~e~l~~l~f~~s~-~p~~~~LaG~~svf~~  469 (510)
T 3c3v_A          415 -----------------------RVYDEELQEGHVLVVPQNFAVAGKS-QSDNFEYVAFKTDS-RPSIANLAGENSVIDN  469 (510)
T ss_dssp             -----------------------EEEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEEEESSS-SCCEEESSSTTSTTTT
T ss_pred             -----------------------EEEeEEEcCCcEEEECCCCeEEEEe-CCCCEEEEEEECCC-CcceeecccHhHHHHh
Confidence                                   4788889999999999999999999 68899999999887 8889999999999999


Q ss_pred             CcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCChhh
Q 039441          481 VERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQ  517 (539)
Q Consensus       481 ~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~~~  517 (539)
                      ||++||++||+++.++|++|+.++++. +|+|++.++
T Consensus       470 lp~eVla~aF~v~~e~v~~L~~~~~e~-~i~~p~~~~  505 (510)
T 3c3v_A          470 LPEEVVANSYGLPREQARQLKNNNPFK-FFVPPSQQS  505 (510)
T ss_dssp             SCHHHHHHHHTCCHHHHHHHHHSCCCS-SEECC----
T ss_pred             CCHHHHHHHHCcCHHHHHHHHhhCCCc-EEECCcccc
Confidence            999999999999999999999998886 999887654

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=100.00  E-value=1.8e-37  Score=321.37  Aligned_cols=310  Identities=15%  Similarity=0.168  Sum_probs=233.6

Q ss_pred             CceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEeCCC
Q 039441          163 PYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVSHER  241 (539)
Q Consensus       163 py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~  241 (539)
                      +|.|.-.+-.. +.+++|.++.   ++.  ..|+....+.+.++++.|++++.||||. +++|+||++|+++++++++++
T Consensus        20 ~~~~~~~~~~~-~~~~~G~~~~---~~~--~~~p~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g   93 (361)
T 2vqa_A           20 AFTYAFSKTPL-VLYDGGTTKQ---VGT--YNFPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEG   93 (361)
T ss_dssp             CSEECGGGSCC-EEETTEEEEE---EST--TTCTTCCSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTS
T ss_pred             ceEEEcccCCc-eecCCceEEE---eCh--hhCccccceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCC
Confidence            35555444333 4679999986   333  3455444456666677999999999888 999999999999999999876


Q ss_pred             -ceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCC--CCceec----cc-----------cCccEEEcChh
Q 039441          242 -RESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTP--GQFRVQ----QR-----------QQGTIKRASQE  303 (539)
Q Consensus       242 -~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~p--g~f~~~----~q-----------~~G~Ivrv~~e  303 (539)
                       ..++.|++||+++||+|++||+.|.+ +++++++.++++.+.-  ++|...    ..           ....|-++...
T Consensus        94 ~~~~~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~p~~vLa~~~~v~~~~~~~l~~~  172 (361)
T 2vqa_A           94 KVEIADVDKGGLWYFPRGWGHSIEGIG-PDTAKFLLVFNDGTFSEGATFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKK  172 (361)
T ss_dssp             CEEEEEEETTEEEEECTTCEEEEEECS-SSCEEEEEEESSTTCCTTSSEEHHHHHHTSCHHHHHHHHTCCHHHHTTSCSS
T ss_pred             cEEEEEEcCCCEEEECCCCeEEEEeCC-CCCEEEEEEECCCCccccceecHhHHHHhCCHHHHHHHhCcCHHHHHhcccc
Confidence             46899999999999999999999998 4789999999876532  344330    00           00000011101


Q ss_pred             hhhhc-----Ccccc----ccCCCCCCCCcceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecce
Q 039441          304 QLKAL-----SHHAS----SRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPH  374 (539)
Q Consensus       304 ql~~l-----~~~~~----~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PH  374 (539)
                      +..++     ++...    ..+.+.......|++....+.+.+.+|.++.+.+.++|.++.  +++..+.|.||++..||
T Consensus       173 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~l~pg~~~~~H  250 (361)
T 2vqa_A          173 QVYISSYGPASGPLASATPQGQTAKIEVPHTHNLLGQQPLVSLGGNELRLASAKEFPGSFN--MTGALIHLEPGAMRQLH  250 (361)
T ss_dssp             CCCEECSSCCCCCGGGCCCSSCCCBCCSCCEEECTTSCCSEEETTEEEEEECTTTCTTSTT--CEEEEEEECTTCEEEEE
T ss_pred             CceEEeCCCCCCccccccccCcCCCCCcceEeccccCCCcccCCCceEEEEehhhCcCccc--ceEEEEEECCCcccccc
Confidence            00011     11100    001111223455677777777788899999999999998875  88999999999999999


Q ss_pred             ecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcE
Q 039441          375 YNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKL  454 (539)
Q Consensus       375 whpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l  454 (539)
                      ||+++.+++||++|++.++|+++++                        +..+..|++||+++||+|.+|++.|.+++++
T Consensus       251 ~H~~~~E~~~Vl~G~~~~~v~~~~g------------------------~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~  306 (361)
T 2vqa_A          251 WHPNADEWQYVLDGEMDLTVFASEG------------------------KASVSRLQQGDVGYVPKGYGHAIRNSSQKPL  306 (361)
T ss_dssp             ECSSCCEEEEEEESCEEEEEECSTT------------------------CEEEEEECTTCEEEECTTCEEEEECCSSSCE
T ss_pred             cCCCCCEEEEEEeCEEEEEEEcCCC------------------------cEEEEEECCCCEEEECCCCeEEeEECCCCCE
Confidence            9999999999999999999999875                        3456789999999999999999999999999


Q ss_pred             EEEEEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEe
Q 039441          455 LTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFV  511 (539)
Q Consensus       455 ~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv  511 (539)
                      .++++.+.+ ++....||   +||+++|++||++||+++.+++++|+ ++++. +++
T Consensus       307 ~~l~~~~~~-~~~~~~~~---~~~~~~~~~vl~~~f~~~~~~~~~l~-~~~~~-~~~  357 (361)
T 2vqa_A          307 DIVVVFNDG-DYQSIDLS---TWLASNPSSVLGNTFQISPELTKKLP-VQDTI-FSL  357 (361)
T ss_dssp             EEEEEESSS-SCCCEEHH---HHHHTSCHHHHHHHHTCCHHHHTTSC-CSCCS-EEC
T ss_pred             EEEEEECCC-CcceeeHH---HHhhhCCHHHHHHHHCcCHHHHHhhh-ccCCc-ccc
Confidence            999988765 56666664   69999999999999999999999997 44554 555

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=100.00  E-value=3.2e-31  Score=277.28  Aligned_cols=302  Identities=12%  Similarity=0.158  Sum_probs=219.9

Q ss_pred             ceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCC-c
Q 039441          164 YYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHER-R  242 (539)
Q Consensus       164 y~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~-~  242 (539)
                      |+|.-.+-.. ..+++|.++.+..     ..|.+...+.++++++.|++.+.||||++.+|+||++|++.+++++.++ .
T Consensus        48 ~~~~~~~~~~-~~~~~G~~~~~~~-----~~lp~~~~~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~  121 (385)
T 1j58_A           48 MKFSFSDTHN-RLEKGGYAREVTV-----RELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRS  121 (385)
T ss_dssp             CEECGGGSCC-EEETTEEEEEECT-----TTCTTCSSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCE
T ss_pred             eEEEcccCCc-cccCCcEEEEecc-----ccCcccCceEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcE
Confidence            6665444333 4579999986332     3455445667777778999999999999999999999999999999744 4


Q ss_pred             eeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCC--CCcee----ccccCccEE---EcChhhhhhcC----
Q 039441          243 ESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTP--GQFRV----QQRQQGTIK---RASQEQLKALS----  309 (539)
Q Consensus       243 ~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~p--g~f~~----~~q~~G~Iv---rv~~eql~~l~----  309 (539)
                      .++.|++||+|+||+|++|++.|.+  +.++++.+|++....  .+|.+    ...+..++.   .++.+.+..|.    
T Consensus       122 ~~~~l~~GD~~~ip~g~~H~~~n~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~evla~~~~vs~~~~~~l~~~~~  199 (385)
T 1j58_A          122 FIDDVGEGDLWYFPSGLPHSIQALE--EGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEK  199 (385)
T ss_dssp             EEEEEETTEEEEECTTCCEEEEEEE--EEEEEEEEESCTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCC
T ss_pred             EEEEeCCCCEEEECCCCeEEEEECC--CCEEEEEEECCCCccccchhhhhhhhhcccHHHHHHHhCCCHHHHHhcccccc
Confidence            4789999999999999999999996  358888888865432  12222    000000000   01111111110    


Q ss_pred             -------ccc-----cccCCCCCCCCcceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecC
Q 039441          310 -------HHA-----SSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNS  377 (539)
Q Consensus       310 -------~~~-----~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhp  377 (539)
                             +..     .....+.......|++.+..+ +.+.+|.++.+.+.+++...  ++++..+.|.||++..||||+
T Consensus       200 ~i~~~~~p~~l~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h~H~  276 (385)
T 1j58_A          200 YIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEP-IESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHP  276 (385)
T ss_dssp             SEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCC-EECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECS
T ss_pred             eEeccCCCCccccccccCCCCCCCCCeeeecccCCC-eeCCCceEEEeecccCCccc--ceEEEEEEECCCcccCceeCC
Confidence                   000     000011112344667777766 56778999999988888654  489999999999999999999


Q ss_pred             CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEE
Q 039441          378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV  457 (539)
Q Consensus       378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v  457 (539)
                      .+.+++||++|++.++|.+++|                        +..+..|++||+++||+|.+|++.|.+++++.++
T Consensus       277 ~~~E~~~Vl~G~~~~~i~~~~g------------------------~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l  332 (385)
T 1j58_A          277 NTHEWQYYISGKARMTVFASDG------------------------HARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFL  332 (385)
T ss_dssp             SSCEEEEEEESEEEEEEEEETT------------------------EEEEEEEESSCEEEECTTCBEEEEECSSSCEEEE
T ss_pred             CCCEEEEEEeCeEEEEEEcCCC------------------------cEEEEEEcCCCEEEECCCCeEEEEECCCCCEEEE
Confidence            8899999999999999987765                        1234689999999999999999999999999999


Q ss_pred             EEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcCC
Q 039441          458 GFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTN  504 (539)
Q Consensus       458 ~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q  504 (539)
                      ++...+.... .   +..+||..+|.++|+++|+++.+++++|++.+
T Consensus       333 ~v~~~~~~~d-~---~~~~~l~~~~~~v~~~~f~~~~~~~~~l~~~~  375 (385)
T 1j58_A          333 EIFKDDHYAD-V---SLNQWLAMLPETFVQAHLDLGKDFTDVLSKEK  375 (385)
T ss_dssp             EEESSSSCCC-E---EHHHHHHTSCHHHHHHHHTCCHHHHTTCCSSC
T ss_pred             EEECCCCccc-c---CHHHHHHhCCHHHHHHHhCCCHHHHHhhhccC
Confidence            9876652222 1   22689999999999999999999999998543

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.96  E-value=2.3e-28  Score=231.73  Aligned_cols=164  Identities=20%  Similarity=0.315  Sum_probs=141.3

Q ss_pred             CCcceecCCCCCcccCCCceEEEeCC-----cccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEec
Q 039441          322 STAPFNLLSRKPIYNNNFGRFFEATP-----KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGG  396 (539)
Q Consensus       322 ~~~~fnl~~~~p~~sn~~G~i~~~~~-----~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~  396 (539)
                      .++.|++.+..+.+.+.+|++.++++     ..||.|+  ++++++++|.||+++.|| |++|++|+||++|++++++++
T Consensus         2 ~p~~f~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~   78 (178)
T 1dgw_A            2 NPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLR--DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVN   78 (178)
T ss_dssp             CTTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGT--TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEE
T ss_pred             CCceechhhcccceEcCCCEEEEEcccCCcchhcCCcC--cEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEe
Confidence            35778888888999999999999877     4566666  499999999999999999 889999999999999999999


Q ss_pred             CCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCC-cEEEEEEeecCCCCc---ccccc
Q 039441          397 PLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNE-KLLTVGFSLNARNNQ---RNFLA  472 (539)
Q Consensus       397 p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne-~l~~v~F~~na~n~~---~~fLA  472 (539)
                      +++                         ..+..|++||+++||+|.+||+.|.+++ .|.++++..+++++.   .++||
T Consensus        79 ~~~-------------------------~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~  133 (178)
T 1dgw_A           79 PDG-------------------------RDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLS  133 (178)
T ss_dssp             TTE-------------------------EEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESS
T ss_pred             CCC-------------------------cEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeecc
Confidence            875                         2356899999999999999999999886 799998876664554   57899


Q ss_pred             cc---chhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecC
Q 039441          473 GK---INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG  513 (539)
Q Consensus       473 G~---~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~  513 (539)
                      |+   ++||++||++||++||+++.+++++|+..+++.+.||..
T Consensus       134 g~~~~~~~~~~~p~~vla~af~v~~~~~~~l~~~~~~~~~iv~~  177 (178)
T 1dgw_A          134 STKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM  177 (178)
T ss_dssp             CCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEEC
T ss_pred             CCcCcchhhhhCCHHHHHHHHCcCHHHHHHHhcCcCcCceEEEc
Confidence            98   799999999999999999999999999554434478764

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.96  E-value=1.1e-28  Score=266.59  Aligned_cols=175  Identities=19%  Similarity=0.344  Sum_probs=138.8

Q ss_pred             CcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCc-cchhhhhhhh
Q 039441          333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR-WSQESQREQQ  411 (539)
Q Consensus       333 p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~-~s~~~~~g~~  411 (539)
                      ..+.+.+|.+..++ .++|.|+++||++++++|.||||++|||| +|++|+||++|+|.++||+|+++. ..++.   ++
T Consensus        22 ~~~~se~G~~e~~~-~~~~~L~~~gvs~~R~~i~pggl~lPh~~-~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~---~~   96 (496)
T 3ksc_A           22 NRIESEGGLIETWN-PNNKQFRCAGVALSRATLQRNALRRPYYS-NAPQEIFIQQGNGYFGMVFPGCPETFEEPQ---ES   96 (496)
T ss_dssp             EEEEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC----------
T ss_pred             cccCCCCcEEEecc-ccchhhccCCceEEEEEecCCCEeCceEc-CCCEEEEEEeCceEEEEEeCCCCccchhhh---hc
Confidence            44667899977776 67899999999999999999999999999 999999999999999999998765 11100   00


Q ss_pred             HHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEE-eecCCCC------cccccccc----------
Q 039441          412 EEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGF-SLNARNN------QRNFLAGK----------  474 (539)
Q Consensus       412 ~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F-~~na~n~------~~~fLAG~----------  474 (539)
                      .+.+.++..+.|+++ .+|++|||||||+|++||++|+|+++|++|++ .+++.+|      ..+||||+          
T Consensus        97 ~~~~~~~~~d~~qk~-~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~~~~  175 (496)
T 3ksc_A           97 EQGEGRRYRDRHQKV-NRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQH  175 (496)
T ss_dssp             --------CCCCCCE-EEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGGGCC
T ss_pred             ccccccccccchhee-eccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCceeeeEecCCCccccccccc
Confidence            011123456778887 49999999999999999999999999999984 4444333      47899998          


Q ss_pred             ------------chhcccCcHHHHHHHcCCCHHHHHHhh--cCCCCceeEecC
Q 039441          475 ------------INIMNQVERETMEVAFNVPARLIERVF--GTNPKESYFVAG  513 (539)
Q Consensus       475 ------------~svL~~~p~evLa~AF~vs~e~v~kL~--~~q~e~~~fv~~  513 (539)
                                  .|||++|++++|+.||||+.++|++|+  ..++..+.||..
T Consensus       176 ~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~v  228 (496)
T 3ksc_A          176 QQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKV  228 (496)
T ss_dssp             -----------CCSGGGGSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEEC
T ss_pred             cccccccccccCCCchhhcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEEe
Confidence                        699999999999999999999999999  443333467643

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.96  E-value=1.9e-28  Score=263.10  Aligned_cols=179  Identities=18%  Similarity=0.209  Sum_probs=145.2

Q ss_pred             CcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCcc---ch-hh--
Q 039441          333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW---SQ-ES--  406 (539)
Q Consensus       333 p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~---s~-~~--  406 (539)
                      ..+.+.+|.+..|+..+ |.|+++++++++++|.||||++|||| +|++|+||++|+|.++||+|+|++.   ++ +.  
T Consensus        19 ~~~~se~G~~e~w~~~~-~~L~~~gvs~~r~~i~p~Gl~lPh~~-~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~   96 (466)
T 3kgl_A           19 HVLKAEAGRIEVWDHHA-PQLRCSGVSFVRYIIESKGLYLPSFF-STAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPG   96 (466)
T ss_dssp             EEEEETTEEEEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCEEECCSSCCC
T ss_pred             ceeeCCCcEEEEECCCC-hhhccCCeEEEEEEECCCCEeCCeeC-CCCeEEEEEeCeEEEEEecCCCcchhhcccccccc
Confidence            44678899999998766 99999999999999999999999999 5999999999999999999999871   10 00  


Q ss_pred             -------hhhhh---------H-HHH-------------HHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEE
Q 039441          407 -------QREQQ---------E-EEE-------------EEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLT  456 (539)
Q Consensus       407 -------~~g~~---------~-~~~-------------~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~  456 (539)
                             ++|++         + +++             .+...++++++ .+|++|||++||+|++||++|+|+++|++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv-~~l~~GDvi~iPaG~~~~~~N~g~e~L~~  175 (466)
T 3kgl_A           97 GGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKV-EHIRTGDTIATHPGVAQWFYNDGNQPLVI  175 (466)
T ss_dssp             C-----------------------------------------CCEEESCE-EEEETTEEEEECTTCEEEEECCSSSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceee-ccccCCCEEEECCCCcEEEEeCCCCcEEE
Confidence                   00000         0 000             12345778887 59999999999999999999999999999


Q ss_pred             EEEeecCCC-------Cccccccccc----------------hhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecC
Q 039441          457 VGFSLNARN-------NQRNFLAGKI----------------NIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG  513 (539)
Q Consensus       457 v~F~~na~n-------~~~~fLAG~~----------------svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~  513 (539)
                      |++.+.+++       ...+||||+.                |||++|++++|++||||+.++|++|+..+++.++||..
T Consensus       176 l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~~~G~Iv~v  255 (466)
T 3kgl_A          176 VSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRV  255 (466)
T ss_dssp             EEEEESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTCCSCSEEEC
T ss_pred             EEEEcCCCcccccCCceeeeEecCCCccccccccccccccCCCccccCCHHHHHHHhCCCHHHHHHHhccccCceeEEEe
Confidence            998765422       2568999986                89999999999999999999999999888755578866


Q ss_pred             C
Q 039441          514 P  514 (539)
Q Consensus       514 p  514 (539)
                      +
T Consensus       256 ~  256 (466)
T 3kgl_A          256 Q  256 (466)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=99.95  E-value=1e-27  Score=259.76  Aligned_cols=187  Identities=19%  Similarity=0.325  Sum_probs=144.3

Q ss_pred             CcceecCCCCCc--ccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCC
Q 039441          323 TAPFNLLSRKPI--YNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSS  400 (539)
Q Consensus       323 ~~~fnl~~~~p~--~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs  400 (539)
                      ...++|.+..|.  +.+.+|.+..++ .+.|.|+++++++++++|+||||++|||| ++++|+||++|+|+++||+|+|+
T Consensus         9 c~~~~L~a~~P~~~~~se~G~~e~~~-~~~~~l~~~gv~~~r~~i~pggl~~Ph~~-~~~~i~yV~~G~g~vg~v~pgc~   86 (493)
T 2d5f_A            9 CQLNNLNALEPDHRVESEGGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSYS-PYPQMIIVVQGKGAIGFAFPGCP   86 (493)
T ss_dssp             TCCSCCCCBCCCEEEECSSEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECEEEEEECCTTCC
T ss_pred             CCcccCCCCCCcceeecCCcEEEEeC-CCChhhccCCEEEEEEEeCCCcEeCceec-CCCeEEEEEeCEEEEEEEeCCCc
Confidence            346778777664  667889876665 55699999999999999999999999999 68999999999999999999987


Q ss_pred             c-cchhhhhhhhHHH-HHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC--CC-----Cccccc
Q 039441          401 R-WSQESQREQQEEE-EEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA--RN-----NQRNFL  471 (539)
Q Consensus       401 ~-~s~~~~~g~~~~~-~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na--~n-----~~~~fL  471 (539)
                      + ..+...+..++.+ .+....+.++++ .+|++||||+||+|++||++|+++++|++|++...+  .|     +..+||
T Consensus        87 et~~~~~~~~~~~~~~~~~~~~d~~qkv-~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~n~~nqld~~~~~F~L  165 (493)
T 2d5f_A           87 ETFEKPQQQSSRRGSRSQQQLQDSHQKI-RHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYL  165 (493)
T ss_dssp             CCEEECC-------------CSEEESCE-EEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEES
T ss_pred             cccccccccccccccccccccccccceE-EEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCcCcccccccccceeec
Confidence            5 1110000000000 000022344445 489999999999999999999999999999987633  12     367899


Q ss_pred             ccc---------------------------------chhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEec
Q 039441          472 AGK---------------------------------INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVA  512 (539)
Q Consensus       472 AG~---------------------------------~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~  512 (539)
                      ||+                                 +|||++|++++||+||+|+.++|++|+..+++.++||.
T Consensus       166 aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~e~La~aF~v~~~~v~kl~~~~~~~g~Iv~  239 (493)
T 2d5f_A          166 AGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVT  239 (493)
T ss_dssp             SSCCCCSCGGGTC---------------------CCCCGGGGSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEE
T ss_pred             cCCccccchhhhhhcccccccccccccccccccccccchhhcCCHHHHHhHhCCCHHHHHHhhhcccCcccEEE
Confidence            984                                 48999999999999999999999999988875557886

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.95  E-value=1.1e-27  Score=257.10  Aligned_cols=184  Identities=19%  Similarity=0.279  Sum_probs=144.2

Q ss_pred             ecCCCCCc--ccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCc-c-
Q 039441          327 NLLSRKPI--YNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR-W-  402 (539)
Q Consensus       327 nl~~~~p~--~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~-~-  402 (539)
                      +|....|.  +.+.+|.+..|++.+ +.|+|++|++++++|.||||++|||| +|++|+||++|+|+++||.|+|++ . 
T Consensus        18 ~l~a~eP~~~i~se~G~~e~~d~~~-~~l~~~gvs~~R~~i~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~   95 (465)
T 3qac_A           18 RLTALEPTNRIQAERGLTEVWDSNE-QEFRCAGVSVIRRTIEPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYE   95 (465)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC-
T ss_pred             cCCCCCCccceeCCCcEEEEECCCC-hhhcccceEEEEEEEcCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceee
Confidence            45455554  678899999998655 68999999999999999999999999 999999999999999999998765 1 


Q ss_pred             -chh----------hhhhhhH-HHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCC------
Q 039441          403 -SQE----------SQREQQE-EEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNAR------  464 (539)
Q Consensus       403 -s~~----------~~~g~~~-~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~------  464 (539)
                       +++          +++|+.+ +++.+...+.++++ .+|++||||+||+|++||++|+|+++|++|++.+.++      
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqk~-~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nqld  174 (465)
T 3qac_A           96 SGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKI-RHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLD  174 (465)
T ss_dssp             -----------------------------CCCCCCE-EEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCSC
T ss_pred             cchhccccccccccccccccccccccccccccccce-eeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCcccccc
Confidence             100          0111111 11222345666766 7999999999999999999999999999998776542      


Q ss_pred             --CCcccccccc----------------------chhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecC
Q 039441          465 --NNQRNFLAGK----------------------INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG  513 (539)
Q Consensus       465 --n~~~~fLAG~----------------------~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~  513 (539)
                        ++..+||||+                      .|||++|++++|+.||||+.+++++|+..+++.+.||..
T Consensus       175 ~~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv  247 (465)
T 3qac_A          175 KNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRV  247 (465)
T ss_dssp             SSSCCEEESSSCCCCSCC--------------CCCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC
T ss_pred             cccceeEEecCCCccccccccccccccccccccccchhhcCCHHHHHHHhCCCHHHHHHhhhccccceeEEEe
Confidence              3456899997                      489999999999999999999999999887755567754

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.95  E-value=2.4e-27  Score=224.73  Aligned_cols=129  Identities=34%  Similarity=0.723  Sum_probs=121.4

Q ss_pred             CCCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCC
Q 039441          161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHE  240 (539)
Q Consensus       161 ~~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg  240 (539)
                      +|||+|+.++|++++++++|.+++|..|+.++++|+|+..+.++.++++|+++++|||+++++|+||++|++++++++++
T Consensus         1 ~~p~~f~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~   80 (178)
T 1dgw_A            1 NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPD   80 (178)
T ss_dssp             CCTTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETT
T ss_pred             CCCceechhhcccceEcCCCEEEEEcccCCcchhcCCcCcEEEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCC
Confidence            58999999999999999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             CceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCcee
Q 039441          241 RRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRV  289 (539)
Q Consensus       241 ~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~~  289 (539)
                      +..++.|++||+|+||+|++||++|+++.++|+++.++++.++||.|..
T Consensus        81 ~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~  129 (178)
T 1dgw_A           81 GRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVED  129 (178)
T ss_dssp             EEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCE
T ss_pred             CcEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEE
Confidence            9899999999999999999999999986568999999999888886543

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.95  E-value=2.7e-27  Score=254.48  Aligned_cols=182  Identities=20%  Similarity=0.315  Sum_probs=142.4

Q ss_pred             ecCCCCCc--ccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCc-cc
Q 039441          327 NLLSRKPI--YNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR-WS  403 (539)
Q Consensus       327 nl~~~~p~--~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~-~s  403 (539)
                      +|....|.  +.+++|.+..++. +.|.|+++++++++++|.|||+++|||| +|++|+||++|+|++++|+|+|+. ..
T Consensus        31 ~l~a~eP~~~v~se~G~~~~~~~-~~~~l~~~gvs~~r~~i~pggl~~Ph~h-~a~ei~yVl~G~g~vg~v~p~~~~tf~  108 (459)
T 2e9q_A           31 NLRAQDPVRRAEAEAGFTEVWDQ-DNDEFQCAGVNMIRHTIRPKGLLLPGFS-NAPKLIFVAQGFGIRGIAIPGCAETYQ  108 (459)
T ss_dssp             SCCCBCCCEEEEETTEEEEECCT-TSHHHHHHTEEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEECCTTCCCCEE
T ss_pred             cCCcCCCCceEecCCcEEEecCC-CChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEeeEEEEEEEeCCCcchhc
Confidence            44444444  7889999888765 5599999999999999999999999999 799999999999999999999864 11


Q ss_pred             hhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCC--C-----Ccccccccc--
Q 039441          404 QESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNAR--N-----NQRNFLAGK--  474 (539)
Q Consensus       404 ~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~--n-----~~~~fLAG~--  474 (539)
                      +.. +.+++  .+....+..++ ..+|++||||+||+|++||++|+|+++|++|++.++++  |     +..+||||.  
T Consensus       109 ~~~-~~~~~--~~~~~~d~~q~-~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~  184 (459)
T 2e9q_A          109 TDL-RRSQS--AGSAFKDQHQK-IRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPE  184 (459)
T ss_dssp             ECC-C---------CCCEEECC-CEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCC
T ss_pred             cch-hhccc--cccccccccce-eEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCcc
Confidence            000 00000  00011122222 36899999999999999999999999999999876542  2     456899985  


Q ss_pred             ----------------------chhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCC
Q 039441          475 ----------------------INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGP  514 (539)
Q Consensus       475 ----------------------~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p  514 (539)
                                            +|||++||++||++||+|+.++|++|+..+++.++||...
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~~  246 (459)
T 2e9q_A          185 QVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVD  246 (459)
T ss_dssp             CCSSTTCC------------CCCCTTTTSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEECC
T ss_pred             ccchhhhccccccccccccccccchhhcCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEeC
Confidence                                  3899999999999999999999999998877555888754

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.94  E-value=7.1e-27  Score=252.71  Aligned_cols=178  Identities=20%  Similarity=0.307  Sum_probs=140.5

Q ss_pred             CcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCc-c--ch-hh--
Q 039441          333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR-W--SQ-ES--  406 (539)
Q Consensus       333 p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~-~--s~-~~--  406 (539)
                      ..+...+|.+..|+ .++|.|+++||++++++|.||||++|||| +|++|+||++|++.++||.|+|++ .  ++ .+  
T Consensus        24 ~~i~se~G~~e~w~-~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~-~a~el~yV~qG~g~~G~v~Pgcpet~~~~~~~~~~  101 (531)
T 3fz3_A           24 NRIQAEAGQIETWN-FNQGDFQCAGVAASRITIQRNGLHLPSYS-NAPQLIYIVQGRGVLGAVFSGCPETFEESQQSSQQ  101 (531)
T ss_dssp             EEEEETTEEEEECC-TTSHHHHHHTEEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEECCTTCCCCEECCCC----
T ss_pred             hhcccCCceEEEeC-CCChhhccCcceEEEEEecCCCEeCCccC-CCCeEEEEEECcEEEEEEcCCCccccccccccccc
Confidence            34678899988887 56999999999999999999999999999 599999999999999999999987 1  00 00  


Q ss_pred             --------------------hhhh--------------hHH----------------HHHHhhh--cceeeEEeeeCCCc
Q 039441          407 --------------------QREQ--------------QEE----------------EEEEESS--RELQKISANLSPGV  434 (539)
Q Consensus       407 --------------------~~g~--------------~~~----------------~~~e~~~--~~y~~~~~~L~~GD  434 (539)
                                          ++|+              +.+                ++.+...  ++++++ .+|++||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv-~~vr~GD  180 (531)
T 3fz3_A          102 GRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKT-RRIREGD  180 (531)
T ss_dssp             ---------------------------------------------------------------CCSCEESCC-EEEETTE
T ss_pred             cccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceee-ecccCCc
Confidence                                0000              000                0011123  677777 5899999


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEEEEEeecCC-------CCcccccccc---------------------------------
Q 039441          435 VFIIPPGHPIALVASPNEKLLTVGFSLNAR-------NNQRNFLAGK---------------------------------  474 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~v~F~~na~-------n~~~~fLAG~---------------------------------  474 (539)
                      |++||+|.+||++|+|+++|++|++.+.++       ++..|||||+                                 
T Consensus       181 viaiPaG~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (531)
T 3fz3_A          181 VVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPR  260 (531)
T ss_dssp             EEEECTTCCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC--------------------------
T ss_pred             EEEECCCCeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCcccccccccccccccccccccccccccccccc
Confidence            999999999999999999999998765431       2456899997                                 


Q ss_pred             --------chhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecC
Q 039441          475 --------INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG  513 (539)
Q Consensus       475 --------~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~  513 (539)
                              .|||++|+.++||.||||+.+++++|+..++..+.||..
T Consensus       261 ~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~kLq~~~~~rg~IVrv  307 (531)
T 3fz3_A          261 QQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQIIQV  307 (531)
T ss_dssp             ------CCSSGGGGSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEEEC
T ss_pred             hhhhcccCCCeeecCCHHHHHHHHCCCHHHHHHHhcccccCceEEEe
Confidence                    389999999999999999999999999877644467633

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.93  E-value=4.7e-26  Score=247.02  Aligned_cols=178  Identities=19%  Similarity=0.308  Sum_probs=137.8

Q ss_pred             CcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCcc---chh----
Q 039441          333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW---SQE----  405 (539)
Q Consensus       333 p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~---s~~----  405 (539)
                      ..+.+.+|.+..+++ +.|.|+|++|++++++|.|||+++|||| +|++|+||++|+|+++||.|+|+.-   ++.    
T Consensus        24 ~~~~se~G~~e~~~~-~~~~l~~~gvs~~r~~i~p~gl~lPh~~-~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~  101 (510)
T 3c3v_A           24 NRIESEGGYIETWNP-NNQEFECAGVALSRLVLRRNALRRPFYS-NAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRR  101 (510)
T ss_dssp             EEEEETTEEEEECCT-TSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECCEEEEEECTTCCCCEEEECCC---
T ss_pred             hhhccCCceEEEeCC-CCcccccCcEEEEEEEECCCCCccceec-CCCeEEEEEeCEEEEEEEeCCCccccccccccccc
Confidence            346788999887775 4599999999999999999999999998 7999999999999999999998641   000    


Q ss_pred             ---hhhhhhHHHH--HHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCC-------Cccccccc
Q 039441          406 ---SQREQQEEEE--EEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARN-------NQRNFLAG  473 (539)
Q Consensus       406 ---~~~g~~~~~~--~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n-------~~~~fLAG  473 (539)
                         .++|++.+++  .....+.++++ .+|++||||+||+|.+||++|.|+++|++|++++.++.       +..+||||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~qkv-~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~~r~F~LaG  180 (510)
T 3c3v_A          102 YQSQRPPRRLQEEDQSQQQQDSHQKV-HRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAG  180 (510)
T ss_dssp             -----------------CEEEEESCC-EEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSCCCCEESSC
T ss_pred             cccccccccccccccccccccccceE-EEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCCcccccccccceeEecC
Confidence               0111211111  11122344544 68999999999999999999999999999987765421       35688998


Q ss_pred             c----------------------------------------------------------chhcccCcHHHHHHHcCCC-H
Q 039441          474 K----------------------------------------------------------INIMNQVERETMEVAFNVP-A  494 (539)
Q Consensus       474 ~----------------------------------------------------------~svL~~~p~evLa~AF~vs-~  494 (539)
                      +                                                          .|||++|++++|++||||+ .
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~~~La~af~v~~~  260 (510)
T 3c3v_A          181 NHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFLAQAFQVDDR  260 (510)
T ss_dssp             CCCCTTGGGCC------------------------------------------------CCTGGGSCHHHHHHHHTCCCH
T ss_pred             CcccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceecCCHHHHHHHhCCCHH
Confidence            2                                                          3799999999999999999 9


Q ss_pred             HHHHHhhcCCC--CceeEecC
Q 039441          495 RLIERVFGTNP--KESYFVAG  513 (539)
Q Consensus       495 e~v~kL~~~q~--e~~~fv~~  513 (539)
                      +++++|+..++  +.++||..
T Consensus       261 ~~~~~l~~~~~~~~~g~Iv~v  281 (510)
T 3c3v_A          261 QIVQNLRGENESEEQGAIVTV  281 (510)
T ss_dssp             HHHHHHTTTTCCTTSCSEEEC
T ss_pred             HHHHHhhccccccccccEEEe
Confidence            99999998776  34578875

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.93  E-value=7e-26  Score=244.59  Aligned_cols=175  Identities=21%  Similarity=0.302  Sum_probs=135.3

Q ss_pred             CCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCc-c--chh-hh
Q 039441          332 KPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR-W--SQE-SQ  407 (539)
Q Consensus       332 ~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~-~--s~~-~~  407 (539)
                      .-.+.+++|.+..++.. .|.|++++|++++++|.|||+++|||| +|++|+||++|+|++++|.|+|+. .  +.. ++
T Consensus        23 ~~~v~se~G~~e~~~~~-~~~l~~~gvs~~r~~l~Pggl~~Ph~~-~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~  100 (476)
T 1fxz_A           23 DNRIESEGGLIETWNPN-NKPFQCAGVALSRCTLNRNALRRPSYT-NGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQ  100 (476)
T ss_dssp             SCEEEETTEEEEECCTT-SHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC---------
T ss_pred             ceEEecCCceEEeeCCC-ChhhccCceEEEEEEEcCCCEecceec-CCceEEEEEecEEEEEEEcCCCcchhhccccccc
Confidence            34568899998887754 599999999999999999999999998 699999999999999999999864 1  100 00


Q ss_pred             hhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCC-------CCcccccccc------
Q 039441          408 REQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNAR-------NNQRNFLAGK------  474 (539)
Q Consensus       408 ~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~-------n~~~~fLAG~------  474 (539)
                      ++++     ....+.++++ .+|++||||+||+|.+||++|+|+++|++|+++..+.       +...++|||.      
T Consensus       101 ~~~~-----~~~~d~~qk~-~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~  174 (476)
T 1fxz_A          101 RGQS-----SRPQDRHQKI-YNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFL  174 (476)
T ss_dssp             --------------CCCCE-EEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTH
T ss_pred             cccc-----cccccccceE-EEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCccceeeccCCcccccc
Confidence            1110     0011223333 6899999999999999999999999999998775431       1356889984      


Q ss_pred             ------------------------chhcccCcHHHHHHHcCCCHHHHHHhhcCCC--CceeEecCC
Q 039441          475 ------------------------INIMNQVERETMEVAFNVPARLIERVFGTNP--KESYFVAGP  514 (539)
Q Consensus       475 ------------------------~svL~~~p~evLa~AF~vs~e~v~kL~~~q~--e~~~fv~~p  514 (539)
                                              .|||++||++|||+||+|+.++|++|+..++  +.++||+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~v~  240 (476)
T 1fxz_A          175 KYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVK  240 (476)
T ss_dssp             HHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECS
T ss_pred             ccccccccccccccccccccccccchhhhcCCHHHHHhhhCCCHHHHHhhhccccccccccEEEeC
Confidence                                    3799999999999999999999999998776  345888754

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.93  E-value=5.7e-26  Score=240.22  Aligned_cols=170  Identities=18%  Similarity=0.281  Sum_probs=142.8

Q ss_pred             cceecC--C-CCCcccCCCceEEEe--CCcccccccccc-eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecC
Q 039441          324 APFNLL--S-RKPIYNNNFGRFFEA--TPKDYQQLQEID-AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP  397 (539)
Q Consensus       324 ~~fnl~--~-~~p~~sn~~G~i~~~--~~~~fP~L~~l~-isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p  397 (539)
                      .||.+.  + ..+.+.+++|.+..+  ...++|.|++++ +++++++|.|||+++|||| +|++|+||++|+|+++||.+
T Consensus        12 ~p~~f~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~-~a~ei~yVl~G~~~v~~v~~   90 (397)
T 2phl_A           12 NPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKP   90 (397)
T ss_dssp             CTTEECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEET
T ss_pred             CCcEeccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEec-CCCeEEEEEeeeEEEEEEeC
Confidence            455554  4 448899999999997  334568999997 9999999999999999998 99999999999999999999


Q ss_pred             CCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE------EEeCCCCeEEEEcCC-CCcEEEEEEeecCCCC--cc
Q 039441          398 LSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV------FIIPPGHPIALVASP-NEKLLTVGFSLNARNN--QR  468 (539)
Q Consensus       398 ~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV------~vVPaG~~h~i~n~g-ne~l~~v~F~~na~n~--~~  468 (539)
                      ++                         ..+..|++|||      ++||+|.+||++|.+ +++|.+|+++..++++  ..
T Consensus        91 ~~-------------------------~~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~~~~~  145 (397)
T 2phl_A           91 DD-------------------------RREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHE  145 (397)
T ss_dssp             TT-------------------------EEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCE
T ss_pred             CC-------------------------cEEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCcccee
Confidence            75                         24689999999      999999999999998 7899999876544333  34


Q ss_pred             cccccc---chhcccCcHHHHHHHcCCCHHHHHHhhcCCC--CceeEecCChhhhh
Q 039441          469 NFLAGK---INIMNQVERETMEVAFNVPARLIERVFGTNP--KESYFVAGPEEQQQ  519 (539)
Q Consensus       469 ~fLAG~---~svL~~~p~evLa~AF~vs~e~v~kL~~~q~--e~~~fv~~p~~~~~  519 (539)
                      ++|||.   .|||++||++||++||+++.+++++|+..+.  +.++||..+..+++
T Consensus       146 f~L~G~~~~~s~~~~~~~~vLa~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~~~~~  201 (397)
T 2phl_A          146 FFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIK  201 (397)
T ss_dssp             EECCCBTTBCCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTTHH
T ss_pred             eeccCCCchhHHhhcCCHHHHHHHhCCCHHHHHhhhhcccccccCceEEcCcccch
Confidence            788885   4799999999999999999999999994443  23489988866544

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.92  E-value=4e-25  Score=235.15  Aligned_cols=154  Identities=23%  Similarity=0.337  Sum_probs=130.3

Q ss_pred             cceecC--CCCCcccCCCceEEEeCCcc--ccccccc-ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCC
Q 039441          324 APFNLL--SRKPIYNNNFGRFFEATPKD--YQQLQEI-DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL  398 (539)
Q Consensus       324 ~~fnl~--~~~p~~sn~~G~i~~~~~~~--fP~L~~l-~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~  398 (539)
                      .||.+.  +-...+.+++|.+..|...+  .+.|.++ ++++++++|.|||+++||| ++|++|+||++|+|++++|.++
T Consensus         5 ~p~~f~~~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Phh-~~A~ei~yV~~G~g~~g~V~~~   83 (418)
T 3s7i_A            5 NPFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKH-ADADNILVIQQGQATVTVANGN   83 (418)
T ss_dssp             CTTEECGGGEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEE-ESEEEEEEEEESEEEEEEECSS
T ss_pred             CCcccccccccceEEcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeeee-CCCCeEEEEEEeeEEEEEEecC
Confidence            455554  44488999999999996533  4677773 6999999999999999995 7999999999999999999997


Q ss_pred             CCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCC-CCcEEEEEEeecCCCC---cccccccc
Q 039441          399 SSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASP-NEKLLTVGFSLNARNN---QRNFLAGK  474 (539)
Q Consensus       399 gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~g-ne~l~~v~F~~na~n~---~~~fLAG~  474 (539)
                      +                         ..+.+|++||||+||+|.+||++|.+ ++.|.+++|.++++++   ..++|||.
T Consensus        84 ~-------------------------~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~  138 (418)
T 3s7i_A           84 N-------------------------RKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASS  138 (418)
T ss_dssp             C-------------------------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCC
T ss_pred             C-------------------------EEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCC
Confidence            5                         45689999999999999999999975 4679999887665444   45678987


Q ss_pred             c---hhcccCcHHHHHHHcCCCHHHHHHhhcC
Q 039441          475 I---NIMNQVERETMEVAFNVPARLIERVFGT  503 (539)
Q Consensus       475 ~---svL~~~p~evLa~AF~vs~e~v~kL~~~  503 (539)
                      .   +||++||.+||++||+++.++|++|+..
T Consensus       139 ~~~~s~~~gf~~evLa~af~v~~~~v~kl~~~  170 (418)
T 3s7i_A          139 RDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLE  170 (418)
T ss_dssp             SSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTS
T ss_pred             cchhHHhhcCCHHHHHHHHCcCHHHHHhhhcc
Confidence            4   7999999999999999999999999954

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.92  E-value=1.1e-24  Score=233.17  Aligned_cols=169  Identities=24%  Similarity=0.390  Sum_probs=140.1

Q ss_pred             cceecCC---CCCcccCCCceEEEeCC--cccccccccc-eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecC
Q 039441          324 APFNLLS---RKPIYNNNFGRFFEATP--KDYQQLQEID-AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP  397 (539)
Q Consensus       324 ~~fnl~~---~~p~~sn~~G~i~~~~~--~~fP~L~~l~-isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p  397 (539)
                      .||.+..   ..+.+.+.+|++..++.  .++|.|.+++ +++++++|.|||+++|| |++|++|+||++|+|+++++++
T Consensus        21 ~p~~f~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~   99 (434)
T 2ea7_A           21 NPFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNP   99 (434)
T ss_dssp             CTTEECTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECS
T ss_pred             CCeEEeccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeC
Confidence            3455544   44888899999999743  5678999987 99999999999999999 6799999999999999999998


Q ss_pred             CCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCC-CCcEEEEEEeecCCCC---ccccccc
Q 039441          398 LSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASP-NEKLLTVGFSLNARNN---QRNFLAG  473 (539)
Q Consensus       398 ~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~g-ne~l~~v~F~~na~n~---~~~fLAG  473 (539)
                      ++                         ..+..|++|||++||+|.+||++|++ +++|.+|++...++++   ..++|+|
T Consensus       100 ~~-------------------------~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g  154 (434)
T 2ea7_A          100 DS-------------------------RDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSS  154 (434)
T ss_dssp             SC-------------------------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSC
T ss_pred             CC-------------------------CEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecC
Confidence            64                         35678999999999999999999998 7899999987554343   3457888


Q ss_pred             c---chhcccCcHHHHHHHcCCCHHHHHHhh-cCCC---------CceeEecCChhhh
Q 039441          474 K---INIMNQVERETMEVAFNVPARLIERVF-GTNP---------KESYFVAGPEEQQ  518 (539)
Q Consensus       474 ~---~svL~~~p~evLa~AF~vs~e~v~kL~-~~q~---------e~~~fv~~p~~~~  518 (539)
                      +   .+||++||++||++||+++.++|++|+ ..++         ..++||+.+..++
T Consensus       155 ~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~~~q~~g~Iv~~~~~~~  212 (434)
T 2ea7_A          155 TEAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQI  212 (434)
T ss_dssp             CSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTCC---------CCCSSSEEECCHHHH
T ss_pred             CcchhhhhhcCCHHHHHHHhCCCHHHHHhhhhcccccccccccccccceEEECCcccC
Confidence            6   369999999999999999999999999 5432         2249999876654

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.91  E-value=4.2e-24  Score=229.12  Aligned_cols=170  Identities=21%  Similarity=0.338  Sum_probs=140.4

Q ss_pred             CcceecCCCCCcccCCCceEEEeCC--cccccccccc-eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCC
Q 039441          323 TAPFNLLSRKPIYNNNFGRFFEATP--KDYQQLQEID-AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLS  399 (539)
Q Consensus       323 ~~~fnl~~~~p~~sn~~G~i~~~~~--~~fP~L~~l~-isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~g  399 (539)
                      ++.|...+..+.+.+.+|++..++.  .++|.|++++ +++++++|.|||++.|| |+++++|+||++|+|+++++.+++
T Consensus        48 p~vf~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~  126 (445)
T 2cav_A           48 PYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG  126 (445)
T ss_dssp             TTEECGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEETTE
T ss_pred             CeEEchhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeCCC
Confidence            3445544544567788999999765  3456888887 99999999999999999 569999999999999999999864


Q ss_pred             CccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCC-CCcEEEEEEeecCCCC---ccccccccc
Q 039441          400 SRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASP-NEKLLTVGFSLNARNN---QRNFLAGKI  475 (539)
Q Consensus       400 s~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~g-ne~l~~v~F~~na~n~---~~~fLAG~~  475 (539)
                                               ..+..|++|||++||+|.+||++|++ +++|.+|++.+.++++   ..++|||..
T Consensus       127 -------------------------~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~  181 (445)
T 2cav_A          127 -------------------------RDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK  181 (445)
T ss_dssp             -------------------------EEEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCS
T ss_pred             -------------------------CEEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCC
Confidence                                     25678999999999999999999998 7899999877655444   245789873


Q ss_pred             ---hhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCChhhh
Q 039441          476 ---NIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQ  518 (539)
Q Consensus       476 ---svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~~~~  518 (539)
                         +||++||++||++||+++.+++++|+..+++.++||+.+..++
T Consensus       182 ~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~g~Iv~~~~~~~  227 (445)
T 2cav_A          182 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQI  227 (445)
T ss_dssp             SCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECCCC--
T ss_pred             chhhhhhcCCHHHHHHHhCCCHHHHHhhhcccCCCCcEEEeCCcch
Confidence               8999999999999999999999999965543358998886543

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.91  E-value=4.9e-24  Score=226.90  Aligned_cols=170  Identities=22%  Similarity=0.356  Sum_probs=140.5

Q ss_pred             cceecC---CCCCcccCCCceEEEeCC--cccccccccc-eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecC
Q 039441          324 APFNLL---SRKPIYNNNFGRFFEATP--KDYQQLQEID-AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP  397 (539)
Q Consensus       324 ~~fnl~---~~~p~~sn~~G~i~~~~~--~~fP~L~~l~-isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p  397 (539)
                      .||.+.   +..+.+.+.+|++..++.  .+.+.|.+++ +++++++|.||++++|| |++|++|+||++|+|++++|++
T Consensus         9 ~p~~f~~~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~   87 (416)
T 1uij_A            9 NPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNN   87 (416)
T ss_dssp             CTTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECS
T ss_pred             CCeEecccccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEEC
Confidence            455444   445678899999999754  4458899987 99999999999999999 5699999999999999999998


Q ss_pred             CCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC-CCCcEEEEEEeecCCCC---ccccccc
Q 039441          398 LSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS-PNEKLLTVGFSLNARNN---QRNFLAG  473 (539)
Q Consensus       398 ~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~-gne~l~~v~F~~na~n~---~~~fLAG  473 (539)
                      ++                         ..+..|++|||++||+|.+||++|+ ++++|++|++...++++   ..++|+|
T Consensus        88 ~~-------------------------~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g  142 (416)
T 1uij_A           88 DD-------------------------RDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSS  142 (416)
T ss_dssp             SC-------------------------EEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSC
T ss_pred             CC-------------------------CeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecC
Confidence            53                         4567899999999999999999999 49999999987644332   3457888


Q ss_pred             cc---hhcccCcHHHHHHHcCCCHHHHHHhh-cCCC----CceeEecCChhhhh
Q 039441          474 KI---NIMNQVERETMEVAFNVPARLIERVF-GTNP----KESYFVAGPEEQQQ  519 (539)
Q Consensus       474 ~~---svL~~~p~evLa~AF~vs~e~v~kL~-~~q~----e~~~fv~~p~~~~~  519 (539)
                      ..   +||++||++||++||+++.+++++|+ ..++    ..++||+.+..+++
T Consensus       143 ~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~g~Iv~~~~~~~~  196 (416)
T 1uij_A          143 TQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIR  196 (416)
T ss_dssp             BSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTCTTCGGGSBSSSEEECCHHHHH
T ss_pred             CcccchhhhcCCHHHHHHHhCcCHHHHHhhhhccccccccCcceEEEeCCcccc
Confidence            64   69999999999999999999999999 6552    23589998765544

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.90  E-value=4e-23  Score=198.82  Aligned_cols=155  Identities=19%  Similarity=0.246  Sum_probs=135.8

Q ss_pred             CCcceec-CCCCCcccCCCce-EEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCC-
Q 039441          322 STAPFNL-LSRKPIYNNNFGR-FFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL-  398 (539)
Q Consensus       322 ~~~~fnl-~~~~p~~sn~~G~-i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~-  398 (539)
                      ..+.|++ +.+++.++|..|. ++.++..++|.|.++++++.++.|.||++..||||+++++|+||++|+++++++++. 
T Consensus        34 ~df~~~~~~~~~~~~~~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~  113 (201)
T 1fi2_A           34 DDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLD  113 (201)
T ss_dssp             SCTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGG
T ss_pred             cceEEeeeecCCCCccCCCCcEEEEEecccCCCcccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCC
Confidence            4567887 7777776766555 899999999999999999999999999999999999999999999999999999764 


Q ss_pred             --CCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccch
Q 039441          399 --SSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKIN  476 (539)
Q Consensus       399 --gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~s  476 (539)
                        +                        ++++..|++||+++||+|.+|++.|.+++++.++++.... ++....++  .+
T Consensus       114 ~~~------------------------~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~-~p~~~~~~--~~  166 (201)
T 1fi2_A          114 SGN------------------------KLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQ-NPGIVFVP--LT  166 (201)
T ss_dssp             GTT------------------------CEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSS-CCCCEEHH--HH
T ss_pred             CCC------------------------eEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCC-CCCeEehh--hH
Confidence              2                        4567899999999999999999999999999999887655 66666665  46


Q ss_pred             hccc---CcHHHHHHHcCCCHHHHHHhhcC
Q 039441          477 IMNQ---VERETMEVAFNVPARLIERVFGT  503 (539)
Q Consensus       477 vL~~---~p~evLa~AF~vs~e~v~kL~~~  503 (539)
                      +|..   ||++||+++|+++.++|++|++.
T Consensus       167 ~~~~~~~~~~~vl~~af~~~~~~v~~l~~~  196 (201)
T 1fi2_A          167 LFGSDPPIPTPVLTKALRVEAGVVELLKSK  196 (201)
T ss_dssp             HHHCSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HhcCCCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence            8876   99999999999999999999864

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.87  E-value=6.5e-22  Score=169.29  Aligned_cols=89  Identities=38%  Similarity=0.687  Sum_probs=85.2

Q ss_pred             ceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccc-cchhcccCcHHHHHHHcCCCHHHHHHh
Q 039441          422 ELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERV  500 (539)
Q Consensus       422 ~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG-~~svL~~~p~evLa~AF~vs~e~v~kL  500 (539)
                      +|++++.+|++|||||||+|||++++|+.  +|+||+|.||+++|+++|||| ++|+|++||.+||++||+++.+++++|
T Consensus         2 ~~~~~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tna~~~~~~~LAG~~~Svl~~l~~evla~aF~~s~ee~~~l   79 (93)
T 1dgw_Y            2 QLRRYAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEEL   79 (93)
T ss_dssp             CEEEEEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSTTBSTTTSCHHHHHHHSSSCTHHHHHH
T ss_pred             ccchhhceecCCcEEEECCCCceeEEecC--CeEEEEEEecCCCCeeeeccCCcccHHHhCCHHHHHHHcCCCHHHHHHH
Confidence            58999999999999999999999999984  499999999999999999999 999999999999999999999999999


Q ss_pred             hcCCCCceeEecC
Q 039441          501 FGTNPKESYFVAG  513 (539)
Q Consensus       501 ~~~q~e~~~fv~~  513 (539)
                      +.+|+++ +|+++
T Consensus        80 ~~~q~e~-~~~~~   91 (93)
T 1dgw_Y           80 LENQKES-YFVDG   91 (93)
T ss_dssp             TTSCCCC-SEECC
T ss_pred             HhcCCCc-eeccC
Confidence            9999887 89987

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.86  E-value=3.3e-22  Score=166.51  Aligned_cols=76  Identities=45%  Similarity=0.844  Sum_probs=73.9

Q ss_pred             cceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCC
Q 039441          324 APFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLS  399 (539)
Q Consensus       324 ~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~g  399 (539)
                      .||||++++|+|+|.+|+++++++.+||+|++++||+++++|.||||++|||||+|++|+||++|+++++||++++
T Consensus         2 ~pfnl~~~~p~~~n~~G~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g   77 (79)
T 1dgw_X            2 KPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQ   77 (79)
T ss_dssp             CCEETTSSCCSEECSSEEEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC-
T ss_pred             CccccccCCCCccCCCCcEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999986

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.85  E-value=1.7e-20  Score=195.66  Aligned_cols=260  Identities=16%  Similarity=0.142  Sum_probs=163.0

Q ss_pred             cCCCceeecCccceeEec-------CCceEEEeeccCcccccccC-cceeeEEEeeeCCCeeecccccCCCcEEEEEece
Q 039441          160 ENNPYYFHSQRFRYRVRS-------DSGHMRVLQRFSQKSHLLRG-IDNYRLAILEANPSTLVVPHHSDAETILVLLKGK  231 (539)
Q Consensus       160 ~~~py~f~~~~f~~~v~s-------e~G~i~vl~~f~~~s~~l~g-v~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~  231 (539)
                      ...|++|.=...+..+..       ++...++|...+....-... ...+.+.++++.|++...||+++..+|+||++|+
T Consensus        51 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~rr~l~~~np~~~g~~~~~~~l~~~~~~l~PG~~~~~H~H~~~e~~yVl~G~  130 (354)
T 2d40_A           51 NCAPAYWNYQEIRPLLLESGGLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGK  130 (354)
T ss_dssp             CSCCEEECSTTTCCCC-----------------EECCSSCTTSCCSSSSCEEEEEEECTTCEEEEEEESSCEEEEEEECS
T ss_pred             CCcCceeCHHHHHHHHHHhhhccCcCCCCEEEEEecCCCcCCccccCCcEEEEEEEECCCCCcCCeecCcceEEEEEEEE
Confidence            456788876655444433       22233333332322110011 2356677888899999999999999999999999


Q ss_pred             EEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCC---CCCCceeccccCccE-EEcChhh-hh
Q 039441          232 GVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVN---TPGQFRVQQRQQGTI-KRASQEQ-LK  306 (539)
Q Consensus       232 g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n---~pg~f~~~~q~~G~I-vrv~~eq-l~  306 (539)
                      |.++.|..   +.+.|++||+|+||+|++|++.|.+ +++++++.+.+..-   ....|...- +..+. ...+..+ .+
T Consensus       131 g~~t~v~g---~~~~l~~GD~~~iP~g~~H~~~n~~-~~~~~~l~v~d~p~~~~l~~~~~~~~-~~~~~~~~~p~~~~~~  205 (354)
T 2d40_A          131 GAFTAVDG---ERTPMNEGDFILTPQWRWHDHGNPG-DEPVIWLDGLDLPLVNILGCGFAEDY-PEEQQPVTRKEGDYLP  205 (354)
T ss_dssp             SCEEEETT---EEEECCTTCEEEECTTSCEEEECCS-SSCEEEEEEECHHHHHHHTCCCEEEC-C--CCCCCSCTTTHHH
T ss_pred             EEEEEECC---EEEEEcCCCEEEECCCCcEEeEeCC-CCCEEEEEEECchhHhhcCceeeecC-ccccCcCcCCcchhhh
Confidence            99977754   5899999999999999999999998 57788888776421   011121100 00000 0001111 00


Q ss_pred             h----cCccccccCCCCCCCC-cceecCC-----------CCCcccCCCceEEEeCCc-ccccccccceeEEEEEEcCCc
Q 039441          307 A----LSHHASSRRRHGRGST-APFNLLS-----------RKPIYNNNFGRFFEATPK-DYQQLQEIDAGVTYVEINQGG  369 (539)
Q Consensus       307 ~----l~~~~~~~~~~~~~~~-~~fnl~~-----------~~p~~sn~~G~i~~~~~~-~fP~L~~l~isva~v~L~pGg  369 (539)
                      .    +.|..   ......++ ..|....           ..+. ...++.+..+++. .++++..  |++..+.|.||+
T Consensus       206 ~~~~~~~p~~---~~~~~~sp~~~y~~~~~~~~l~~~~~~~~~~-~~~G~~~~~~np~t~~~~~~t--i~~~~~~l~pG~  279 (354)
T 2d40_A          206 RYAANMLPLR---HQTGNSSPIFNYRYDRSREVLHDLTRLGDAD-EWDGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGF  279 (354)
T ss_dssp             HHSSSEECSS---CCCCSSCSCCEECHHHHHHHHHHHHTTSCCB-TTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTC
T ss_pred             hhccCCCCcc---ccccCCCcceeccHHHHHHHHHhhhhccccC-CCCCeEEEEeCCCcCCCCCCc--ceeEEEEECCCC
Confidence            0    01100   00000011 2232211           1111 1235567777754 5777765  778889999999


Q ss_pred             eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441          370 MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS  449 (539)
Q Consensus       370 m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~  449 (539)
                      +..||||+++ +|.||++|+|+++|   ++                          .+.++++||+|+||++++|++.|+
T Consensus       280 ~~~~H~h~~~-ev~~v~~G~g~~~v---~~--------------------------~~~~~~~GD~~~vP~~~~H~~~n~  329 (354)
T 2d40_A          280 ASRVARTTDS-TIYHVVEGSGQVII---GN--------------------------ETFSFSAKDIFVVPTWHGVSFQTT  329 (354)
T ss_dssp             BCCCBEESSC-EEEEEEEEEEEEEE---TT--------------------------EEEEEETTCEEEECTTCCEEEEEE
T ss_pred             CCCceecCCc-EEEEEEeCeEEEEE---CC--------------------------EEEEEcCCCEEEECCCCeEEEEeC
Confidence            9999999887 99999999999999   32                          236899999999999999999995


Q ss_pred             CCCcEEEEEEeec
Q 039441          450 PNEKLLTVGFSLN  462 (539)
Q Consensus       450 gne~l~~v~F~~n  462 (539)
                        +++.+++|.+.
T Consensus       330 --e~~~l~~~~d~  340 (354)
T 2d40_A          330 --QDSVLFSFSDR  340 (354)
T ss_dssp             --EEEEEEEEESH
T ss_pred             --CCEEEEEEcCH
Confidence              67888887543

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.83  E-value=8.5e-20  Score=188.85  Aligned_cols=154  Identities=11%  Similarity=0.136  Sum_probs=130.2

Q ss_pred             CcceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCcc
Q 039441          323 TAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW  402 (539)
Q Consensus       323 ~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~  402 (539)
                      ...|++.+..+. .+.+|++..++..+||.+..  +++..+.|.||+++.||||+++.+|+||++|+++++|+++++.  
T Consensus        20 ~~~~~~~~~~~~-~~~~G~~~~~~~~~~p~~~~--~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~--   94 (361)
T 2vqa_A           20 AFTYAFSKTPLV-LYDGGTTKQVGTYNFPVSKG--MAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGK--   94 (361)
T ss_dssp             CSEECGGGSCCE-EETTEEEEEESTTTCTTCCS--CEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSC--
T ss_pred             ceEEEcccCCce-ecCCceEEEeChhhCccccc--eeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCc--
Confidence            467788777664 55899999999999999875  7999999999999999999889999999999999999998752  


Q ss_pred             chhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCc
Q 039441          403 SQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVE  482 (539)
Q Consensus       403 s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p  482 (539)
                                            .....|++||+++||+|.+|++.|.+++++.++.+++.+ +...+...+..+||+++|
T Consensus        95 ----------------------~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~p  151 (361)
T 2vqa_A           95 ----------------------VEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDG-TFSEGATFSVTDWLSHTP  151 (361)
T ss_dssp             ----------------------EEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESST-TCCTTSSEEHHHHHHTSC
T ss_pred             ----------------------EEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCC-CccccceecHhHHHHhCC
Confidence                                  234789999999999999999999988999999877665 222111112379999999


Q ss_pred             HHHHHHHcCCCHHHHHHhhcCC
Q 039441          483 RETMEVAFNVPARLIERVFGTN  504 (539)
Q Consensus       483 ~evLa~AF~vs~e~v~kL~~~q  504 (539)
                      .++|+++|+++.+.+++|...+
T Consensus       152 ~~vLa~~~~v~~~~~~~l~~~~  173 (361)
T 2vqa_A          152 IAWVEENLGWTAAQVAQLPKKQ  173 (361)
T ss_dssp             HHHHHHHHTCCHHHHTTSCSSC
T ss_pred             HHHHHHHhCcCHHHHHhccccC
Confidence            9999999999999999998654

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.81  E-value=6.8e-18  Score=171.96  Aligned_cols=257  Identities=18%  Similarity=0.185  Sum_probs=157.3

Q ss_pred             cCCCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEe
Q 039441          160 ENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVS  238 (539)
Q Consensus       160 ~~~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~  238 (539)
                      ...|||+.......+. ..+..+++|-.  .    ...-..+.+.++++.|++...+|||. +.+++||++|++.+++  
T Consensus        12 ~~~~~v~r~~~~~~~~-~~g~~~~~l~~--~----~~~~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~--   82 (337)
T 1y3t_A           12 EKMPYLLRSGEGERYL-FGRQVATVMAN--G----RSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL--   82 (337)
T ss_dssp             SSCCEEECTTCSEEEE-ETTEEEEEEEC--H----HHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE--
T ss_pred             CCCCEEecCCCccEEE-ECCeEEEEEee--c----CCCCCeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE--
Confidence            4568998877765433 34455554321  0    00113667778888999998889888 9999999999999986  


Q ss_pred             CCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCcee-ccccCccEE------EcChhhhhh----
Q 039441          239 HERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRV-QQRQQGTIK------RASQEQLKA----  307 (539)
Q Consensus       239 pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~~-~~q~~G~Iv------rv~~eql~~----  307 (539)
                        ...++.|++||+|+||+|++|.+.|.++  .++++.++.+.....-|.. +....+...      ..+.+.+..    
T Consensus        83 --~~~~~~l~~Gd~~~~p~~~~H~~~n~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~  158 (337)
T 1y3t_A           83 --DGERYLLISGDYANIPAGTPHSYRMQSH--RTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAV  158 (337)
T ss_dssp             --TTEEEEECTTCEEEECTTCCEEEEECST--TEEEEEEEETTSSTHHHHHHSEECSCSSCCSSCCCCCTTCTTGGGTSS
T ss_pred             --CCEEEEECCCCEEEECCCCcEEEEECCC--CeEEEEEECCCCHHHHHHHhCcccccccCCCCCCcccCHHHHHHhHhh
Confidence              2367999999999999999999999974  4778887776532111111 100000000      000000100    


Q ss_pred             -----cCc---cccc-cCC--CCCCCCcceecCC-CCCcccCCCceEEEeCCcccccccccceeEEEEEEcC-Cceecce
Q 039441          308 -----LSH---HASS-RRR--HGRGSTAPFNLLS-RKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQ-GGMMVPH  374 (539)
Q Consensus       308 -----l~~---~~~~-~~~--~~~~~~~~fnl~~-~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~p-Ggm~~PH  374 (539)
                           +.+   ...+ .|.  .......+|.+.. ..+.+...+..+..+.+.   ......+ +..+.+.| |+...+|
T Consensus       159 ~gv~~~~~~~~~~~~~~~~~~~l~~~~~~~v~r~~~~~~~~~~g~~~~~l~~~---~~~~~~~-~~~~~~~p~g~~~~~h  234 (337)
T 1y3t_A          159 ATIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQ---KNTDGQF-IVVSSEGPKGDRIVDH  234 (337)
T ss_dssp             CEECCCCCCCSSCSCEECCBCSCCSSSCCEEECTTCSEEEEETTEEEEEEECG---GGTTTSC-EEEEEEECSCCCCCCE
T ss_pred             ccEEEcCCCCccccccchhhhcCCCCCCCEEECCCCcCEEEECCcEEEEEecc---cccCCcE-EEEEEEcCCCCCCCCc
Confidence                 000   0000 000  0011122333332 222333333334444321   1122223 44556666 6777899


Q ss_pred             ecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcE
Q 039441          375 YNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKL  454 (539)
Q Consensus       375 whpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l  454 (539)
                      ||+.+.+++||++|++.+.+   ++                        +  +..|++||+++||++.+|++.|.++ ++
T Consensus       235 ~H~~~~e~~~vl~G~~~~~i---~~------------------------~--~~~l~~GD~~~ip~~~~H~~~n~~~-~~  284 (337)
T 1y3t_A          235 YHEYHTETFYCLEGQMTMWT---DG------------------------Q--EIQLNPGDFLHVPANTVHSYRLDSH-YT  284 (337)
T ss_dssp             ECSSCEEEEEEEESCEEEEE---TT------------------------E--EEEECTTCEEEECTTCCEEEEECSS-SE
T ss_pred             CCCCCcEEEEEEeCEEEEEE---CC------------------------E--EEEECCCCEEEECCCCeEEEEECCC-Ce
Confidence            99889999999999999987   22                        1  2579999999999999999999987 88


Q ss_pred             EEEEEeecC
Q 039441          455 LTVGFSLNA  463 (539)
Q Consensus       455 ~~v~F~~na  463 (539)
                      .++.+.+.+
T Consensus       285 ~~l~v~~~~  293 (337)
T 1y3t_A          285 KMVGVLVPG  293 (337)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEcCc
Confidence            888876444

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.75  E-value=6.9e-17  Score=160.81  Aligned_cols=191  Identities=11%  Similarity=0.073  Sum_probs=132.2

Q ss_pred             eeEEEeeeCCCeeeccc-c-cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          201 YRLAILEANPSTLVVPH-H-SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh-~-~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      +-+.++++.|++-..++ | ..+.+++||++|++.+++    +.+++.|++||.++||+|++|++.|.+ +++++++.+.
T Consensus        59 ~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~----~~~~~~L~~Gd~~~~~~~~~H~~~N~~-~~~~~~l~v~  133 (261)
T 1rc6_A           59 FVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA----EGKTFALSEGGYLYCPPGSLMTFVNAQ-AEDSQIFLYK  133 (261)
T ss_dssp             SEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE----TTEEEEEETTEEEEECTTCCCEEEECS-SSCEEEEEEE
T ss_pred             EEEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeCC-CCCEEEEEEE
Confidence            34556677999877654 3 357899999999999987    346899999999999999999999998 5778877766


Q ss_pred             ccCCC-CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccC-CCc-eEEEeCCcccccccc
Q 039441          279 QPVNT-PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNN-NFG-RFFEATPKDYQQLQE  355 (539)
Q Consensus       279 d~~n~-pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn-~~G-~i~~~~~~~fP~L~~  355 (539)
                      ..... +|.     .+.-.|+                            +..+-.+.... .+| .+..+.+.+    ..
T Consensus       134 ~~~~~~~g~-----~p~~~v~----------------------------~~~~~~~~~~~~~~~~~~~~l~~~~----~~  176 (261)
T 1rc6_A          134 RRYVPVEGY-----APWLVSG----------------------------NASELERIHYEGMDDVILLDFLPKE----LG  176 (261)
T ss_dssp             EECCCCTTC-----CCCCEEE----------------------------EGGGSCCC-------CEEEECSCCS----TT
T ss_pred             eccccCCCC-----CCceEEc----------------------------CHHHCCcccCCCCcceEEEEecCcc----cC
Confidence            43211 110     0111111                            11111111111 122 223333221    13


Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .++.+..+.|.||+...+|||+...+++||++|++.+.+=   +                        +.  ..|++||+
T Consensus       177 ~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~---~------------------------~~--~~l~~GD~  227 (261)
T 1rc6_A          177 FDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLD---N------------------------NW--IPVKKGDY  227 (261)
T ss_dssp             CSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESS---S------------------------CE--EEEETTCE
T ss_pred             CceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEEC---C------------------------EE--EEeCCCCE
Confidence            4688999999999999999998889999999999998752   1                        12  57999999


Q ss_pred             EEeCCCCeEEEEcCCC-CcEEEEEEeec
Q 039441          436 FIIPPGHPIALVASPN-EKLLTVGFSLN  462 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gn-e~l~~v~F~~n  462 (539)
                      ++||+|.+|++.|.++ +++.++.+.+.
T Consensus       228 i~~~~~~~H~~~n~g~~~~~~~l~~~d~  255 (261)
T 1rc6_A          228 IFMGAYSLQAGYGVGRGEAFSYIYSKDC  255 (261)
T ss_dssp             EEECSSEEEEEEEC----CEEEEEEEEC
T ss_pred             EEECCCCcEEeEeCCCCcCEEEEEEecC
Confidence            9999999999999988 99999987654

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.73  E-value=7.6e-16  Score=160.19  Aligned_cols=221  Identities=19%  Similarity=0.171  Sum_probs=144.4

Q ss_pred             eeCCCeeec---ccccC-CCcEEEEEeceEEEEEEe-CCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccC
Q 039441          207 EANPSTLVV---PHHSD-AETILVLLKGKGVITLVS-HERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV  281 (539)
Q Consensus       207 ~l~P~~l~l---Ph~~d-A~~~~yV~~G~g~i~~v~-pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~  281 (539)
                      .+.|++...   ||||. ..+++||++|++.+.+=. ++...++.|++||+++||+|++|++.|.++ .. +++.++.+.
T Consensus        53 ~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~-~~-~~l~v~~p~  130 (350)
T 1juh_A           53 TNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP-DT-EMTGVIVPG  130 (350)
T ss_dssp             EEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECST-TE-EEEEEEESS
T ss_pred             EEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCC-CC-EEEEEEcCc
Confidence            346777665   78776 999999999999998877 455579999999999999999999999985 44 667766654


Q ss_pred             CCCCCcee-ccc-------------------------------cCccEEEcChhhhhhcC-ccccccCCCCCCCCccee-
Q 039441          282 NTPGQFRV-QQR-------------------------------QQGTIKRASQEQLKALS-HHASSRRRHGRGSTAPFN-  327 (539)
Q Consensus       282 n~pg~f~~-~~q-------------------------------~~G~Ivrv~~eql~~l~-~~~~~~~~~~~~~~~~fn-  327 (539)
                      ....-|.. +..                               .-|+++..+..+++.|. ..+.+   .......+++ 
T Consensus       131 ~~~~~f~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~---~~~w~~~~~~~  207 (350)
T 1juh_A          131 GFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGTAPA---NTVWHTGANAL  207 (350)
T ss_dssp             CTTHHHHHHSEECCCTTCCSSCCC--------------CGGGGGGTCEECTTCCCCCCCBTTEESS---SSCSSSSCCCC
T ss_pred             cHHHHHHHhccccccccccccCCcccccCccccCHHHHHHHHHHcCCEeccccCChhHhhcccccc---CCccccCcccc
Confidence            32111110 110                               11122111111111111 00000   1122345777 


Q ss_pred             cC-CCCCcc-cCCCceEEE---------eCCcccccccccceeEEEEEEcCC--ceecceecCCCCEEEEEEeceEEEEE
Q 039441          328 LL-SRKPIY-NNNFGRFFE---------ATPKDYQQLQEIDAGVTYVEINQG--GMMVPHYNSKATTIVLVVEGRGRFEM  394 (539)
Q Consensus       328 l~-~~~p~~-sn~~G~i~~---------~~~~~fP~L~~l~isva~v~L~pG--gm~~PHwhpnA~ei~yV~~G~g~v~v  394 (539)
                      |. +.+|.| .++.|..+.         ..-...+.++...+++..+.+.++  |...|+|+...++++||++|++.++|
T Consensus       208 l~~~~~p~~~~~~~g~~~~~~~~g~v~~~~l~~~~~~~~~~f~~~~i~~~~~~~g~~~~~h~~~~~~~~~vleG~~~i~i  287 (350)
T 1juh_A          208 ASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQI  287 (350)
T ss_dssp             CSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEE
T ss_pred             cCCCCCceEECCCccchhhcccCCcEEEEEEEeCCcCceeEEEEEEEeeccccCCCCCCcccCCCcEEEEEEeeEEEEEE
Confidence            54 566777 666665332         011112344555688999999884  55677776799999999999999999


Q ss_pred             ecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          395 GGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       395 V~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      -...                            ...|++||+++||+|.+|.+.|.++. ..++.+..
T Consensus       288 ~g~~----------------------------~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~  325 (350)
T 1juh_A          288 GDYA----------------------------ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSS  325 (350)
T ss_dssp             TTSC----------------------------CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEE
T ss_pred             CCeE----------------------------EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEec
Confidence            7631                            15799999999999999999998553 66666554

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.71  E-value=1.2e-15  Score=161.11  Aligned_cols=266  Identities=14%  Similarity=0.130  Sum_probs=165.6

Q ss_pred             ccCCCceeecCccce-------eEecCCceEEEeeccCcccccccCc-ceeeEEEeeeCCCeeecccccCCCcEEEEEec
Q 039441          159 EENNPYYFHSQRFRY-------RVRSDSGHMRVLQRFSQKSHLLRGI-DNYRLAILEANPSTLVVPHHSDAETILVLLKG  230 (539)
Q Consensus       159 ~~~~py~f~~~~f~~-------~v~se~G~i~vl~~f~~~s~~l~gv-~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G  230 (539)
                      ..--|++++-...+.       .+..+.|.-++|...+........+ ..+-..+..+.|+...-+|.+.+.++.||++|
T Consensus        73 ~~~~p~~w~~~~~~~~l~~~~~~~~~~~~~RR~~~L~nP~~~~~~~~t~~L~a~~~~l~PG~~~~~HrH~~~ev~~IleG  152 (394)
T 3bu7_A           73 PKSAPVHWKWSDLRREVLRAIDLVRPEDAGRRVVYLRNPQRKDVSAACGWLFSGIQTMKAGERAGAHRHAASALRFIMEG  152 (394)
T ss_dssp             CSSCCCEECHHHHHHHHHHHHHHSCSSCSSCCCEECCCGGGGGGTCSBTTBEEEEEEECTTCBCCCEEESSCEEEEEEEC
T ss_pred             CCcccceecHHHHHHHHHHhhcccCcccCceEEEEEeCCcccCcCccCCeeEEEEEEECCCCCcCCccCCcceEEEEEEe
Confidence            445688888666554       3455666666666666543222221 23444666779999999998888899999999


Q ss_pred             eEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe-cCCCceEEEEEEeccC--C-CCCCcee-ccccCccEEEcChhh-
Q 039441          231 KGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN-QDNVDRLHVAKLLQPV--N-TPGQFRV-QQRQQGTIKRASQEQ-  304 (539)
Q Consensus       231 ~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N-~g~~e~L~iv~l~d~~--n-~pg~f~~-~~q~~G~Ivrv~~eq-  304 (539)
                      +|..+.|+   .+.+.+++||+|++|+|..|++.| +| +++|+++.++|-.  + ..-.|.. ...+...+ ..+... 
T Consensus       153 ~G~~t~v~---G~~~~~~~GD~i~~P~g~~H~~~N~~g-de~l~~l~v~d~Pl~~~l~~~f~e~~~~~~~~~-~~~~~~~  227 (394)
T 3bu7_A          153 SGAYTIVD---GHKVELGANDFVLTPNGTWHEHGILES-GTECIWQDGLDIPLTNCLEANFYEVHPNDYQTT-DIPLNDS  227 (394)
T ss_dssp             SCEEEEET---TEEEEECTTCEEEECTTCCEEEEECTT-CCCEEEEEEECHHHHHHTTCCCEEECTTSSCCC-CCCTTHH
T ss_pred             eEEEEEEC---CEEEEEcCCCEEEECcCCCEEEEcCCC-CCCEEEEEcccchhhhhcCccccccCcccccCc-cCCccch
Confidence            99887774   358899999999999999999999 87 5899999888731  1 1112211 00000000 000000 


Q ss_pred             h-----hhcCccccccCCCCCCCC-cceec-------C--CCCCcccCCCceEEE-eCCcccccccccceeEEEEEEcCC
Q 039441          305 L-----KALSHHASSRRRHGRGST-APFNL-------L--SRKPIYNNNFGRFFE-ATPKDYQQLQEIDAGVTYVEINQG  368 (539)
Q Consensus       305 l-----~~l~~~~~~~~~~~~~~~-~~fnl-------~--~~~p~~sn~~G~i~~-~~~~~fP~L~~l~isva~v~L~pG  368 (539)
                      .     -.|.|.. . .+....++ ..|..       .  .....-....|.... +++.+=... ...|.+..+.|.||
T Consensus       228 ~~~~~~~~l~p~~-~-~~~~~~sP~~~y~w~~~~~~L~~~~~~~~~~~~~~~~l~l~nP~~g~~~-~~tl~~~~~~l~PG  304 (394)
T 3bu7_A          228 PLTYGGPALLPQL-D-KWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLILRYTNPQTGGHP-MLTMGASMQMLRPG  304 (394)
T ss_dssp             HHHHCSTTEEESS-C-CCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTTTBEEEEECCTTTSSCS-SSSCEEEEEEECTT
T ss_pred             hhhhcCccccccc-c-cccCCCCCcEEecHHHHHHHHHHhhhccCcCcCCceEEEEeCCCCCCCC-CCeeeEEEEEECCC
Confidence            0     0000000 0 00000011 01111       0  000111222344333 343321111 23488999999999


Q ss_pred             ceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEc
Q 039441          369 GMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA  448 (539)
Q Consensus       369 gm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n  448 (539)
                      +...||.|+ ..++.||++|+|.+.|   ++                        ++  ..+++||+|+||+|..|.+.|
T Consensus       305 ~~~~~HrH~-~~~v~~VleG~G~~~V---~g------------------------e~--~~~~~GD~~~iP~g~~H~~~N  354 (394)
T 3bu7_A          305 EHTKAHRHT-GNVIYNVAKGQGYSIV---GG------------------------KR--FDWSEHDIFCVPAWTWHEHCN  354 (394)
T ss_dssp             CBCCCEEES-SCEEEEEEECCEEEEE---TT------------------------EE--EEECTTCEEEECTTCCEEEEE
T ss_pred             CcCCCcccC-CcEEEEEEeCeEEEEE---CC------------------------EE--EEEeCCCEEEECCCCeEEeEe
Confidence            999999996 5579999999997766   22                        22  579999999999999999999


Q ss_pred             CC-CCcEEEEEEeec
Q 039441          449 SP-NEKLLTVGFSLN  462 (539)
Q Consensus       449 ~g-ne~l~~v~F~~n  462 (539)
                      .+ ++++.+++|.+.
T Consensus       355 ~g~~e~~~ll~i~D~  369 (394)
T 3bu7_A          355 TQERDDACLFSFNDF  369 (394)
T ss_dssp             CCSSCCEEEEEEESH
T ss_pred             CCCCCCeEEEEeeCH
Confidence            87 788999998643

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.71  E-value=4.4e-16  Score=153.56  Aligned_cols=185  Identities=12%  Similarity=0.131  Sum_probs=129.9

Q ss_pred             eEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEE-eCCCCeEEEEecCCCceEEEEEEecc
Q 039441          202 RLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVIS-VPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       202 Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~-iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      .+.++++.|++..-+||+...+++||++|++.+++    ...++.|.+||.++ ||+|++|.+.|.++ ++++++-+.+.
T Consensus        35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~----~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~-~~~~~l~i~r~  109 (243)
T 3h7j_A           35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV----GDVTRKMTALESAYIAPPHVPHGARNDTD-QEVIAIDIKRL  109 (243)
T ss_dssp             EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE----TTEEEEEETTTCEEEECTTCCEEEEECSS-SCEEEEEEEEC
T ss_pred             EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE----CCEEEEECCCCEEEEcCCCCcEeeEeCCC-CcEEEEEEecc
Confidence            45566789999999999999999999999999987    23578999999885 99999999999984 66665544321


Q ss_pred             CCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEeCCcccccccccceeE
Q 039441          281 VNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGV  360 (539)
Q Consensus       281 ~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isv  360 (539)
                      ...+                      .+..        ..+ -..+.|..... .          .....+.+....+.+
T Consensus       110 ~~~e----------------------~~~~--------p~g-~~~~~L~~~~~-~----------~~~~~~~~~~~~~~~  147 (243)
T 3h7j_A          110 KADE----------------------TYTS--------PED-YFLDIFKTRDL-L----------PGMEVTFFVEDWVEI  147 (243)
T ss_dssp             CTTC----------------------CCCC--------CTT-SEECCEECSCS-B----------TTBCEEEEEETTEEE
T ss_pred             Cccc----------------------cCCC--------chh-hhhhhccCccc-c----------cCcceeeeccceeEE
Confidence            1000                      0000        000 00001110000 0          000111122334677


Q ss_pred             EEEEEcC-CceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441          361 TYVEINQ-GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP  439 (539)
Q Consensus       361 a~v~L~p-Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP  439 (539)
                      ..+.|.| |+...+|||+ ..+++||++|++.+.+-.                           +.  ..|++||+++||
T Consensus       148 ~~~~~~p~g~~~~~H~H~-~~e~~~Vl~G~~~~~i~~---------------------------~~--~~l~~Gd~i~ip  197 (243)
T 3h7j_A          148 MLAKIPGNGGEMPFHKHR-NEQIGICIGGGYDMTVEG---------------------------CT--VEMKFGTAYFCE  197 (243)
T ss_dssp             EEEEECTTTEEEEEECCS-SEEEEEECSSCEEEEETT---------------------------EE--EEECTTCEEEEC
T ss_pred             EEEEECCCCCcCCCEeCC-CcEEEEEEECEEEEEECC---------------------------EE--EEECCCCEEEEC
Confidence            8889999 9999999996 479999999999887532                           12  469999999999


Q ss_pred             CCCeEEEEcCCCCcEEEEEEeecC
Q 039441          440 PGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +|.+|.+.|.+++++.++.+.+.+
T Consensus       198 ~~~~H~~~n~~~~~~~~l~v~~p~  221 (243)
T 3h7j_A          198 PREDHGAINRSEKESKSINIFFPP  221 (243)
T ss_dssp             TTCCEEEEECSSSCEEEEEEEESC
T ss_pred             CCCcEEeEeCCCCCEEEEEEEcCC
Confidence            999999999999999998876543

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.70  E-value=8.3e-16  Score=154.31  Aligned_cols=189  Identities=13%  Similarity=0.166  Sum_probs=134.5

Q ss_pred             eeEEEeeeCCCeeeccc--ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          201 YRLAILEANPSTLVVPH--HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh--~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      +-+.++++.|++-..++  +..+.+++||++|+..+++    +.+++.|++||.++||+|++|++.|.+ ++.++++.+.
T Consensus        62 ~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~----~~~~~~L~~GD~~~~~~~~~H~~~N~~-~~~~~~l~v~  136 (274)
T 1sef_A           62 FVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD----GQETHELEAGGYAYFTPEMKMYLANAQ-EADTEVFLYK  136 (274)
T ss_dssp             SEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTSCCEEEESS-SSCEEEEEEE
T ss_pred             EEEEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeCC-CCCEEEEEEE
Confidence            34556677999876544  3457899999999999887    235899999999999999999999998 5778777766


Q ss_pred             ccCC-CCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcc-c-CCCceEEEeCCcccccccc
Q 039441          279 QPVN-TPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIY-N-NNFGRFFEATPKDYQQLQE  355 (539)
Q Consensus       279 d~~n-~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~-s-n~~G~i~~~~~~~fP~L~~  355 (539)
                      .... .+|.     .+.-.|+++                            .+..+.. . ..+..+..+.+...    .
T Consensus       137 ~~y~~~~g~-----~p~~~v~~~----------------------------~d~~~~~~~~~~g~~~~~l~~~~~----~  179 (274)
T 1sef_A          137 KRYQPLAGH-----QPYKVVGSI----------------------------HDQQPEEYEGMTDVLLWSLLPKEF----D  179 (274)
T ss_dssp             EECCCCTTC-----CCCCEEEEG----------------------------GGSCCEEGGGCTTEEEEECSCSST----T
T ss_pred             eeeeeCCCC-----CCcceeCCh----------------------------HHCCccccCCCCCeEEEEeCCccc----C
Confidence            4321 1110     111122221                            1111111 1 12233444443222    2


Q ss_pred             cceeEEEEEEcCCceecc-eecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          356 IDAGVTYVEINQGGMMVP-HYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       356 l~isva~v~L~pGgm~~P-HwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      .++.+..+.|.||+...+ ||| ...+++||++|++.+.+-.                           +.  ..|++||
T Consensus       180 ~~~~~~~~~l~pg~~~~~~H~H-~~~E~~yVl~G~~~~~i~~---------------------------~~--~~l~~GD  229 (274)
T 1sef_A          180 FDMNMHILSFEPGASHAYIETH-VQEHGAYLISGQGMYNLDN---------------------------EW--YPVEKGD  229 (274)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCC-SCCEEEEEEECEEEEEETT---------------------------EE--EEEETTC
T ss_pred             CCEEEEEEEECCCCccCcceec-cCeEEEEEEeCEEEEEECC---------------------------EE--EEECCCC
Confidence            368899999999999988 999 5689999999999997621                           12  5799999


Q ss_pred             EEEeCCCCeEEEEcCCC-CcEEEEEEee
Q 039441          435 VFIIPPGHPIALVASPN-EKLLTVGFSL  461 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gn-e~l~~v~F~~  461 (539)
                      +++||++.+|++.|.++ +++.++++.+
T Consensus       230 ~i~i~~~~~H~~~n~~~~~~~~~l~~~~  257 (274)
T 1sef_A          230 YIFMSAYVPQAAYAVGREEPLMYVYSKD  257 (274)
T ss_dssp             EEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             EEEECCCCCEEEEeCCCCCCEEEEEEEc
Confidence            99999999999999988 8899988754

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.70  E-value=8.4e-17  Score=168.11  Aligned_cols=150  Identities=13%  Similarity=0.187  Sum_probs=124.1

Q ss_pred             cceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccc
Q 039441          324 APFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWS  403 (539)
Q Consensus       324 ~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s  403 (539)
                      ..|++.+..+. ...+|+++.++...+|.+.  ++++..+.|.||++..||||+ +.+|+||++|++++++++.++    
T Consensus        48 ~~~~~~~~~~~-~~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g----  119 (385)
T 1j58_A           48 MKFSFSDTHNR-LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKG----  119 (385)
T ss_dssp             CEECGGGSCCE-EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTS----
T ss_pred             eEEEcccCCcc-ccCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCC----
Confidence            67788777664 4579999999999999988  599999999999999999997 999999999999999999865    


Q ss_pred             hhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcH
Q 039441          404 QESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVER  483 (539)
Q Consensus       404 ~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~  483 (539)
                                          +.+...|++||+++||+|.+|++.|.+ +++.|+.++..........+ ...+||+.+|.
T Consensus       120 --------------------~~~~~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~p~  177 (385)
T 1j58_A          120 --------------------RSFIDDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFSENSTF-QLTDWLAHTPK  177 (385)
T ss_dssp             --------------------CEEEEEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESCTTCCGGGEE-EHHHHHHTSCH
T ss_pred             --------------------cEEEEEeCCCCEEEECCCCeEEEEECC-CCEEEEEEECCCCccccchh-hhhhhhhcccH
Confidence                                344568999999999999999999986 46888875544422221111 12689999999


Q ss_pred             HHHHHHcCCCHHHHHHhhcC
Q 039441          484 ETMEVAFNVPARLIERVFGT  503 (539)
Q Consensus       484 evLa~AF~vs~e~v~kL~~~  503 (539)
                      ++|+++|+++.+++++|...
T Consensus       178 evla~~~~vs~~~~~~l~~~  197 (385)
T 1j58_A          178 EVIAANFGVTKEEISNLPGK  197 (385)
T ss_dssp             HHHHHHHTCCTGGGTTSCSS
T ss_pred             HHHHHHhCCCHHHHHhcccc
Confidence            99999999999999998764

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.69  E-value=2.2e-15  Score=147.20  Aligned_cols=187  Identities=17%  Similarity=0.293  Sum_probs=129.6

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      +..++++.+.|++.+-+|.++.++++||++|++.+++    +-+++.|++||++++|+|++|.+.|..   +++++.++-
T Consensus        36 ~~~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i----~~~~~~l~~Gd~~~~p~~~~H~~~a~~---~~~~l~i~~  108 (227)
T 3rns_A           36 NSYISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI----ENNKKTISNGDFLEITANHNYSIEARD---NLKLIEIGE  108 (227)
T ss_dssp             SEEEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE----SSCEEEEETTEEEEECSSCCEEEEESS---SEEEEEEEE
T ss_pred             CcEEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC---CcEEEEEEe
Confidence            5577888889999998998899999999999999987    235799999999999999999999975   355555443


Q ss_pred             cCCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceE-EEeCCcccccccccce
Q 039441          280 PVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRF-FEATPKDYQQLQEIDA  358 (539)
Q Consensus       280 ~~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i-~~~~~~~fP~L~~l~i  358 (539)
                      ...            +...  ....++.+.            ....|++.+..+ |.. ++.. ..+       ..+-++
T Consensus       109 ~~~------------~~~~--~~~~~~~l~------------~~~~~~~~d~~~-~~~-g~~~~~~l-------~~~~~~  153 (227)
T 3rns_A          109 KIG------------DGNM--ENKTLKMLE------------SASAFNLAEVVE-YQE-GKIVSKNL-------VAKPNL  153 (227)
T ss_dssp             CC------------------------------------------CCEESGGGSC-CCT-TCEEEEEE-------EEETTE
T ss_pred             ecc------------cchh--hhhHhhcCC------------ccccCcHHHccc-cCC-CCEEEEEE-------EECCCe
Confidence            100            0000  000011111            123455544332 222 3321 111       122358


Q ss_pred             eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441          359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII  438 (539)
Q Consensus       359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV  438 (539)
                      .+..+.+.||+...+|||+ ..+++||++|++.+.+=   +                        +  ...|++||.++|
T Consensus       154 ~~~~~~~~~G~~~~~H~H~-~~e~~~Vl~G~~~~~i~---g------------------------~--~~~l~~Gd~i~i  203 (227)
T 3rns_A          154 VMTIMSFWKGESLDPHKAP-GDALVTVLDGEGKYYVD---G------------------------K--PFIVKKGESAVL  203 (227)
T ss_dssp             EEEEEEECTTCEEEEECCS-SEEEEEEEEEEEEEEET---T------------------------E--EEEEETTEEEEE
T ss_pred             EEEEEEECCCCccCCEECC-CcEEEEEEeEEEEEEEC---C------------------------E--EEEECCCCEEEE
Confidence            8899999999999999996 67999999999998762   2                        1  357999999999


Q ss_pred             CCCCeEEEEcCCCCcEEEEEE
Q 039441          439 PPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       439 PaG~~h~i~n~gne~l~~v~F  459 (539)
                      |+|.+|++.|. .+++.++.+
T Consensus       204 p~~~~H~~~~~-~~~~~~ll~  223 (227)
T 3rns_A          204 PANIPHAVEAE-TENFKMLLI  223 (227)
T ss_dssp             CTTSCEEEECC-SSCEEEEEE
T ss_pred             CCCCcEEEEeC-CCCEEEEEE
Confidence            99999999993 345666543

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.63  E-value=1.4e-14  Score=146.19  Aligned_cols=195  Identities=15%  Similarity=0.187  Sum_probs=132.8

Q ss_pred             eeeEEEeeeCCCeee-cc-cccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          200 NYRLAILEANPSTLV-VP-HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~-lP-h~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .+-+.++++.|++-. .| |++...+++||++|++.+.+=    .+++.|++||.++||+|++|++.|.+ +++++++.+
T Consensus        67 ~~~~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~----g~~~~L~~GD~i~ip~~~~H~~~N~g-~~~~~~l~v  141 (278)
T 1sq4_A           67 TFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQ----GQVHAMQPGGYAFIPPGADYKVRNTT-GQHTRFHWI  141 (278)
T ss_dssp             SCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEES----SCEEEECTTEEEEECTTCCEEEECCS-SSCEEEEEE
T ss_pred             cEEEEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEEC----CEEEEECCCCEEEECCCCcEEEEECC-CCCEEEEEE
Confidence            445556667999877 45 447889999999999999872    35789999999999999999999998 477887776


Q ss_pred             eccCCC-CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCc--eEEEeCCccccccc
Q 039441          278 LQPVNT-PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFG--RFFEATPKDYQQLQ  354 (539)
Q Consensus       278 ~d~~n~-pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G--~i~~~~~~~fP~L~  354 (539)
                      ...... +|.-    .+.-.+..+     ..+.+.             ++      +  ...+.  ....+.    |.-.
T Consensus       142 ~~~y~~~~g~~----~p~~~vgn~-----~di~~~-------------~~------~--~~~~~~~~~r~l~----p~~~  187 (278)
T 1sq4_A          142 RKHYQKVDGVP----LPEAFVTNE-----QDIQPL-------------VM------P--DTEGRWSTTRFVD----MSDM  187 (278)
T ss_dssp             EEECCCCTTCC----CCCCEEEEG-----GGSCCE-------------EC------S--SGGGCEEEECSSC----TTCT
T ss_pred             EeccccCCCCc----CCcccccch-----hhcCcc-------------cC------C--CCCCceeEEEEec----CCCc
Confidence            643211 1100    011011111     001100             00      0  00011  111222    2222


Q ss_pred             ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      ..++.+..++|.||+-...|.+..-.+.+||++|+|.+.+   ++                        +  ...|++||
T Consensus       188 ~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~------------------------~--~~~v~~GD  238 (278)
T 1sq4_A          188 RHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQ------------------------D--WVEVEAGD  238 (278)
T ss_dssp             TCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TT------------------------E--EEEEETTC
T ss_pred             CCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CC------------------------E--EEEeCCCC
Confidence            4579999999999999886443356789999999998865   22                        1  25899999


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          435 VFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      ++++++|.+|++.|.|+++|+||.+.+-
T Consensus       239 ~~~~~~~~~h~~~n~g~~~~~yl~~~d~  266 (278)
T 1sq4_A          239 FMWLRAFCPQACYSGGPGRFRYLLYKDV  266 (278)
T ss_dssp             EEEEEESCCEEEECCSSSCEEEEEEEEC
T ss_pred             EEEECCCCCEEEEcCCCCCEEEEEEEEc
Confidence            9999999999999999999999976544

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.60  E-value=9.6e-14  Score=139.65  Aligned_cols=191  Identities=11%  Similarity=0.106  Sum_probs=136.2

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      +.+.+.+++|.|++-..+|++.+.+++||++|+..|.+=   ..+++.|++||.++||+|..|++.|.   ++.+++.+.
T Consensus        68 ~~f~~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~---~g~~~~L~~Gds~y~p~~~~H~~~N~---~~Ar~l~V~  141 (266)
T 4e2q_A           68 SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNT---SSSSKKLTVDSYAYLPPNFHHSLDCV---ESATLVVFE  141 (266)
T ss_dssp             CSSEEEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC-----CCCEEECTTEEEEECTTCCCEEEES---SCEEEEEEE
T ss_pred             CcEEEEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEEC---CCcEEEEcCCCEEEECCCCCEEEEeC---CCEEEEEEE
Confidence            466677888899998877888999999999999988762   12479999999999999999999995   346655554


Q ss_pred             ccCCC-CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCccc-CCCceEEEeCCccccccccc
Q 039441          279 QPVNT-PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYN-NNFGRFFEATPKDYQQLQEI  356 (539)
Q Consensus       279 d~~n~-pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~s-n~~G~i~~~~~~~fP~L~~l  356 (539)
                      ..... +|      ..-..|+.                           |..+-++.-- ...-....+.+.++    ..
T Consensus       142 k~y~~~~g------~~p~~~v~---------------------------~~~dv~~~~~~g~~~~~r~l~p~~~----~~  184 (266)
T 4e2q_A          142 RRYEYLGS------HTTELIVG---------------------------STDKQPLLETPGEVFELRKLLPMSV----AY  184 (266)
T ss_dssp             EECCCCTT------CCCCCEEE---------------------------EGGGSCCBCCTTCCSEEEESSCCST----TC
T ss_pred             eEeeeCCC------CCCceeeC---------------------------cHhHCCCcccCCCcEEEEEccCccc----cc
Confidence            32110 00      00111111                           1111111111 11112445555543    55


Q ss_pred             ceeEEEEEEcCCceecc-eecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          357 DAGVTYVEINQGGMMVP-HYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       357 ~isva~v~L~pGgm~~P-HwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      ++.|..++|+|||.... |.| ...+.+||++|+|.+.+=.                             -...|++||+
T Consensus       185 d~~~~~~t~~PG~~~p~~e~H-~~eh~~~vL~G~g~y~l~~-----------------------------~~~~V~~GD~  234 (266)
T 4e2q_A          185 DFNIHTMDFQPGEFLNVKEVH-YNQHGLLLLEGQGIYRLGD-----------------------------NWYPVQAGDV  234 (266)
T ss_dssp             SEEEEEEEECTTCBCSSCCCC-SCCEEEEEEECEEEEEETT-----------------------------EEEEEETTCE
T ss_pred             ceEEEEEEECCCcCcCCceEc-ccceEEEEEeceEEEEECC-----------------------------EEEEecCCCE
Confidence            89999999999999986 666 5669999999999886422                             1257999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +++|++.+|++.|+|++++.+|-.++-
T Consensus       235 i~~~~~~~h~~~n~G~e~~~yl~ykd~  261 (266)
T 4e2q_A          235 IWMAPFVPQWYAALGKTRSRYLLYKDV  261 (266)
T ss_dssp             EEECTTCCEEEEEESSSCEEEEEEEEC
T ss_pred             EEECCCCcEEEEeCCCCCEEEEEEccc
Confidence            999999999999999999999976654

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.58  E-value=3e-13  Score=133.86  Aligned_cols=190  Identities=14%  Similarity=0.112  Sum_probs=130.7

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+-+.++++.|++-..+++  ..+++||++|++.+++    ..+++.|++||.++||+|++|++.|.   .+++++.+..
T Consensus        49 ~~~~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~n~---~~~~~l~v~~  119 (246)
T 1sfn_A           49 RFVQFTAEMPAGAQATESV--YQRFAFVLSGEVDVAV----GGETRTLREYDYVYLPAGEKHMLTAK---TDARVSVFEK  119 (246)
T ss_dssp             SSEEEEEEECTTCEEECCS--SEEEEEEEEEEEEEEC----SSCEEEECTTEEEEECTTCCCEEEEE---EEEEEEEEEE
T ss_pred             cEEEEEEEECCCCcCCCCc--eeEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeC---CCEEEEEEEe
Confidence            3445566779998776665  8899999999998886    23579999999999999999999998   4465555443


Q ss_pred             cCCC-CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCc-ccCCCce-EEEeCCccccccccc
Q 039441          280 PVNT-PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPI-YNNNFGR-FFEATPKDYQQLQEI  356 (539)
Q Consensus       280 ~~n~-pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~-~sn~~G~-i~~~~~~~fP~L~~l  356 (539)
                      .... +|.    ..+. .++.                           |..+-.+. +....|. +..+.+.+   + ..
T Consensus       120 ~y~~~~g~----~~p~-~~vg---------------------------~~~dv~~~~~~~~~g~~~r~l~p~~---~-~~  163 (246)
T 1sfn_A          120 PYQTVEGV----QAPG-VYWG---------------------------NERENPGYPFEGDDHLIARKLLPDE---P-AF  163 (246)
T ss_dssp             CCCCBTTB----CCCC-CEEE---------------------------ETTTCCCEETTSCTTEEEEECSCCC---T-TC
T ss_pred             eeccCCCC----cCCc-eeec---------------------------cHhhCCccccCCCCCeEEEEeCCCc---c-CC
Confidence            2110 000    0000 1111                           11111111 1111232 33333322   1 45


Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..++|.||+-...|.+....+.+||++|++.+.+   ++                        +.  ..|++||.+
T Consensus       164 ~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~------------------------~~--~~l~~GD~~  214 (246)
T 1sfn_A          164 DFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EE------------------------NY--YPVTAGDII  214 (246)
T ss_dssp             SEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TT------------------------EE--EEEETTCEE
T ss_pred             CeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CC------------------------EE--EEcCCCCEE
Confidence            78999999999999886544467899999999999876   22                        23  589999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +++++.+|++.|.+++++.+|.+++-+
T Consensus       215 ~~~~~~pH~~~n~g~~~~~yl~~kd~~  241 (246)
T 1sfn_A          215 WMGAHCPQWYGALGRNWSKYLLYKDMN  241 (246)
T ss_dssp             EECTTCCEEEEEESSSCEEEEEEEECS
T ss_pred             EECCCCCEEEEcCCCCCEEEEEEEecc
Confidence            999999999999999999999887654

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.57  E-value=2.1e-13  Score=142.71  Aligned_cols=223  Identities=18%  Similarity=0.188  Sum_probs=142.9

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+-..+..+.|++-.-+|-|..+++.||++|+|..++|+.   +.+.+++||+|++|+|+.|.+.|+| +++|+++.++
T Consensus       101 ~~L~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG---~~~~~~~GD~v~iP~g~~H~~~N~g-de~l~~l~v~  176 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNG---DPVRMSRGDLLLTPGWCFHGHMNDT-DQPMAWIDGL  176 (368)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETT---EEEEEETTCEEEECTTCCEEEEECS-SSCEEEEEEE
T ss_pred             CceEEEEEEECCCCccCceecccceEEEEEecceEEEEECC---EEEEEeCCCEEEECCCCcEEeEeCC-CCCeEEEEec
Confidence            34566667779999999997788899999999997566643   6899999999999999999999998 5899999988


Q ss_pred             ccCC---CCCCcee-ccc---cCccEEEcChhh-h---hhcCccccccCCCCCCCC---ccee-----cCC-----CCCc
Q 039441          279 QPVN---TPGQFRV-QQR---QQGTIKRASQEQ-L---KALSHHASSRRRHGRGST---APFN-----LLS-----RKPI  334 (539)
Q Consensus       279 d~~n---~pg~f~~-~~q---~~G~Ivrv~~eq-l---~~l~~~~~~~~~~~~~~~---~~fn-----l~~-----~~p~  334 (539)
                      |-.-   ..-.|.. ...   ++-.. ..+.+. +   ..|.|...  ......++   +++.     |..     ....
T Consensus       177 D~Pl~~~l~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~l~P~~~--~~~~~~sP~~~ypw~~~~~aL~~~~~l~~~~~  253 (368)
T 3nw4_A          177 DIPFSQQMDVGFFEFGSDRVTDYATP-NFSRGERLWCHPGLRPLSG--LQNTVASPIGAYRWEFTDRALTEQLLLEDEGQ  253 (368)
T ss_dssp             CHHHHHHHTCCCEEECCSSCSCCCCC-SSCHHHHHHCSTTCCCGGG--CSCCSSCSCCEECHHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHhhcCceeeecccccccccccc-cCCcccchhhccccccccc--cCCCCCCCceecCHHHHHHHHHhhhhhhhccC
Confidence            8421   1112221 100   00000 000000 0   01111100  00001111   1111     111     1111


Q ss_pred             ccCCC-ce--EEEeCCcc-cccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhh
Q 039441          335 YNNNF-GR--FFEATPKD-YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQ  410 (539)
Q Consensus       335 ~sn~~-G~--i~~~~~~~-fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~  410 (539)
                      ..... |.  +..+++.+ -+.+..  |++....|.||.-..||=|+ +..|.||++|+|.+.|   ++           
T Consensus       254 ~~~~~~g~~~~~y~NP~tg~~~~pt--i~~~~~~L~pG~~t~~hRht-~s~Vy~V~eG~G~~~I---~~-----------  316 (368)
T 3nw4_A          254 PATVAPGHAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNEV-GSTVFQVFEGAGAVVM---NG-----------  316 (368)
T ss_dssp             SCSSBTTEEEEECBCTTTSSBSSSS--CEEEEEEECTTCBCCCEEES-SCEEEEEEESCEEEEE---TT-----------
T ss_pred             CCcccCceEEEEEeCCCCCCCcchh--HHhheEEECCCCccCCeecc-ccEEEEEEeCcEEEEE---CC-----------
Confidence            11111 33  34444432 345554  88899999999999999994 6699999999999988   22           


Q ss_pred             hHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          411 QEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       411 ~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                                   ++  +++++||+|+||.+.+|...|.  +++.+++|.+.
T Consensus       317 -------------~~--~~w~~gD~fvvP~w~~h~~~n~--~~a~Lf~~~D~  351 (368)
T 3nw4_A          317 -------------ET--TKLEKGDMFVVPSWVPWSLQAE--TQFDLFRFSDA  351 (368)
T ss_dssp             -------------EE--EEECTTCEEEECTTCCEEEEES--SSEEEEEEESH
T ss_pred             -------------EE--EEecCCCEEEECCCCcEEEEeC--CCEEEEEEeCH
Confidence                         23  5799999999999999999997  46777776543

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.27  E-value=4e-11  Score=115.02  Aligned_cols=102  Identities=16%  Similarity=0.189  Sum_probs=77.8

Q ss_pred             CceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEeCC----CceeeecCCCc
Q 039441          179 SGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVSHE----RRESFNMEHGD  251 (539)
Q Consensus       179 ~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg----~~~~~~v~~GD  251 (539)
                      ++.+.+  .+....+.|.  |+..++   +++.|++...||||. +.+|+||++|++.+++++.+    ...++.|++||
T Consensus        53 G~~v~~--~~~~~~p~l~~~~~~~~~---~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD  127 (201)
T 1fi2_A           53 GSAVTE--LDVAEWPGTNTLGVSMNR---VDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGE  127 (201)
T ss_dssp             SEEEEE--ESTTTCGGGTTSSCEEEE---EEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTC
T ss_pred             CcEEEE--EecccCCCcccCceEEEE---EEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCC
Confidence            444554  2344445555  444444   555999999999887 68999999999999999764    33489999999


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCc
Q 039441          252 VISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQF  287 (539)
Q Consensus       252 V~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f  287 (539)
                      +++||+|++||+.|.+ +++++++.++.+. +|+..
T Consensus       128 ~~~iP~g~~H~~~N~g-~~~~~~l~v~~~~-~p~~~  161 (201)
T 1fi2_A          128 TFVIPRGLMHFQFNVG-KTEAYMVVSFNSQ-NPGIV  161 (201)
T ss_dssp             EEEECTTCCEEEEECS-SSCEEEEEEESSS-CCCCE
T ss_pred             EEEECCCCeEEEEeCC-CCCEEEEEEECCC-CCCeE
Confidence            9999999999999998 4789988888643 34443

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.01  E-value=1.3e-09  Score=95.28  Aligned_cols=79  Identities=19%  Similarity=0.277  Sum_probs=67.1

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+.++.|.||+...+|||+...++.||++|++.+.+-..                          +.  ..|++||++
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~--------------------------~~--~~l~~Gd~~   89 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNG--------------------------IV--THLKAGDIA   89 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTT--------------------------CE--EEEETTEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCC--------------------------eE--EEeCCCCEE
Confidence            57889999999999999999878999999999998865221                          12  579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +||+|.+|.+.|.+++++.++++.+..
T Consensus        90 ~i~~~~~H~~~n~~~~~~~~l~v~~p~  116 (125)
T 3h8u_A           90 IAKPGQVHGAMNSGPEPFIFVSVVAPG  116 (125)
T ss_dssp             EECTTCCCEEEECSSSCEEEEEEEEST
T ss_pred             EECCCCEEEeEeCCCCCEEEEEEECCC
Confidence            999999999999999999999876543

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=99.00  E-value=6e-08  Score=96.04  Aligned_cols=183  Identities=15%  Similarity=0.196  Sum_probs=116.7

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+.+.++.+ .+.+.+-.|. .++++||++|+.+|+.   + -....+++||+++||+|+.+-|...+. -++  +.+.
T Consensus        45 ~~~~~G~~~~-~g~~~v~~~p-~dE~~~VleG~~~lt~---~-g~~~~~~~Gd~~~ip~G~~~~w~~~~~-~~~--~y~~  115 (238)
T 3myx_A           45 QGIAAGIVEF-GTALSVEAYP-YTEMLVMHRGSVTLTS---G-TDSVTLSTGESAVIGRGTQVRIDAQPE-SLW--AFCA  115 (238)
T ss_dssp             TSEEEEEEEE-CSEEEESSCS-SEEEEEEEESEEEEEE---T-TEEEEEETTCEEEECTTCCEEEEECTT-EEE--EEEE
T ss_pred             CCeEEEEEEe-ccccccccCC-CcEEEEEEEeEEEEEC---C-CeEEEEcCCCEEEECCCCEEEEEecCC-eEE--EEEe
Confidence            4566777888 7777764433 3899999999999997   2 478889999999999999999999873 333  2222


Q ss_pred             cc-CCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEeCCcccccccccc
Q 039441          279 QP-VNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEID  357 (539)
Q Consensus       279 d~-~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~  357 (539)
                      -+ ...|       .+.| |+.+..+  ..|.|..         ...+=.+.+..|...     ...+...     .+-.
T Consensus       116 ~~~~~~p-------~~~~-~~~i~~~--~~l~P~~---------~p~p~~~l~G~P~~~-----~~~~~~~-----~~g~  166 (238)
T 3myx_A          116 STQASGP-------DKSG-ITALDRL--ALLTPSS---------PPDPSIMISPLPQCR-----SNNLFED-----TAST  166 (238)
T ss_dssp             ECSCCSC-------CCCS-EEEECTT--CCCEEEC---------CCCGGGBSSCCCCEE-----EEEEEEC-----SSSS
T ss_pred             ccCCCCC-------CCCc-cEEecCC--CCCCCCC---------CCChhheecCCchhe-----eeEEEEC-----CCCC
Confidence            22 2223       1244 5555432  1122210         011122333344321     1111110     1224


Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      +++..-..+||..+ + |+-..+|++||++|+..++.  .+|                        ..  .+|++||+++
T Consensus       167 ~~~GiW~~tpG~~~-~-~~~~~~E~~~ILeG~v~lt~--~~G------------------------~~--~~~~aGD~~~  216 (238)
T 3myx_A          167 LRIGVWDSTPYERI-S-RPHKIHELMNLIEGRVVLSL--ENG------------------------SS--LTVNTGDTVF  216 (238)
T ss_dssp             CEEEEEEECCEEBC-C-EECSSCEEEEEEECCEEEEE--TTS------------------------CE--EEECTTCEEE
T ss_pred             EEEeEEEeCCCEEE-C-CcCCCCEEEEEEEeEEEEEe--CCC------------------------CE--EEECCCCEEE
Confidence            78888899998844 3 22268899999999998864  333                        12  4699999999


Q ss_pred             eCCCCeEEEEcC
Q 039441          438 IPPGHPIALVAS  449 (539)
Q Consensus       438 VPaG~~h~i~n~  449 (539)
                      ||+|+...+.-.
T Consensus       217 ~P~G~~~tWev~  228 (238)
T 3myx_A          217 VAQGAPCKWTST  228 (238)
T ss_dssp             ECTTCEEEEEES
T ss_pred             ECCCCEEEEEEC
Confidence            999999888766

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.00  E-value=2.9e-09  Score=101.41  Aligned_cols=83  Identities=16%  Similarity=0.308  Sum_probs=72.1

Q ss_pred             ceeEEEEEEcCCce------ecceecC--CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEe
Q 039441          357 DAGVTYVEINQGGM------MVPHYNS--KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISA  428 (539)
Q Consensus       357 ~isva~v~L~pGgm------~~PHwhp--nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~  428 (539)
                      ++.+..+.|.||+.      ..+|||+  +..++.||++|++.+.+-...+                        +.+..
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g------------------------~~~~~  121 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEG------------------------DAKWI  121 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTC------------------------CEEEE
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCC------------------------cEEEE
Confidence            57888889999998      7899998  4689999999999999987644                        35667


Q ss_pred             eeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          429 NLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       429 ~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      .|++||+++||+|.+|.+.|.+++++.++++...+
T Consensus       122 ~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~  156 (190)
T 1x82_A          122 SMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD  156 (190)
T ss_dssp             EECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred             EECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence            89999999999999999999999999999876543

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.00  E-value=4.1e-09  Score=87.69  Aligned_cols=79  Identities=16%  Similarity=0.226  Sum_probs=67.9

Q ss_pred             ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      .-++.+..+.+.||+...+|||+...+++||++|++.+.+-   +                        +  ...|++||
T Consensus        25 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~---~------------------------~--~~~l~~Gd   75 (105)
T 1v70_A           25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG---E------------------------E--EALLAPGM   75 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET---T------------------------E--EEEECTTC
T ss_pred             CCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC---C------------------------E--EEEeCCCC
Confidence            44688999999999999999998788999999999998762   1                        1  25799999


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          435 VFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +++||+|.+|.+.|.+++++.++.+.+.
T Consensus        76 ~~~ip~~~~H~~~~~~~~~~~~~~v~~p  103 (105)
T 1v70_A           76 AAFAPAGAPHGVRNESASPALLLVVTAP  103 (105)
T ss_dssp             EEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred             EEEECCCCcEEeEeCCCCCEEEEEEeCC
Confidence            9999999999999988888998877543

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=98.99  E-value=2e-09  Score=99.11  Aligned_cols=84  Identities=19%  Similarity=0.342  Sum_probs=70.4

Q ss_pred             CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeC-----CCceeeecCCCcEEEeCCCCeEEEEecCCCce
Q 039441          197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSH-----ERRESFNMEHGDVISVPAGTTYYLSNQDNVDR  271 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~p-----g~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~  271 (539)
                      |...+.+.++++.|++..-+|||+..+++||++|++.+.+-..     +....+.|++||+++||+|++|++.|.+.+++
T Consensus        37 g~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~  116 (163)
T 1lr5_A           37 GMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHED  116 (163)
T ss_dssp             CCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSC
T ss_pred             CCCcEEEEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCC
Confidence            4455677777789999988999999999999999999988553     23378999999999999999999999873477


Q ss_pred             EEEEEEecc
Q 039441          272 LHVAKLLQP  280 (539)
Q Consensus       272 L~iv~l~d~  280 (539)
                      ++++.++.+
T Consensus       117 ~~~l~i~~~  125 (163)
T 1lr5_A          117 LQVLVIISR  125 (163)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEECC
Confidence            888887764

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=98.99  E-value=1.5e-09  Score=94.89  Aligned_cols=78  Identities=12%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             eeeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .+.+.++++.|++..-+|||. ..+++||++|++.+.+   ++..++.|++||+++||+|++|++.|.+ +++++++.++
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~---~~~~~~~l~~Gd~~~i~~~~~H~~~n~~-~~~~~~l~v~  113 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ---GNGIVTHLKAGDIAIAKPGQVHGAMNSG-PEPFIFVSVV  113 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC---STTCEEEEETTEEEEECTTCCCEEEECS-SSCEEEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE---CCCeEEEeCCCCEEEECCCCEEEeEeCC-CCCEEEEEEE
Confidence            456667777999999999888 4899999999998865   2346899999999999999999999998 5889888888


Q ss_pred             ccC
Q 039441          279 QPV  281 (539)
Q Consensus       279 d~~  281 (539)
                      .+.
T Consensus       114 ~p~  116 (125)
T 3h8u_A          114 APG  116 (125)
T ss_dssp             EST
T ss_pred             CCC
Confidence            764

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=98.98  E-value=3.4e-09  Score=96.26  Aligned_cols=85  Identities=19%  Similarity=0.200  Sum_probs=71.0

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .++.+..+.+.||+...+|||+...+++||++|++.+.+-.....                       ..++..|.+||+
T Consensus        41 ~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~-----------------------~~~~~~l~~Gd~   97 (148)
T 2oa2_A           41 DHLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDN-----------------------LHFQEEVFDDYA   97 (148)
T ss_dssp             SSCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTB-----------------------CCEEEEEETTCE
T ss_pred             CceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccc-----------------------ceeeEEECCCCE
Confidence            357888999999999999999888899999999999988543210                       124468999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ++||+|.+|.+.|.+++++.++++...+
T Consensus        98 i~ip~g~~H~~~n~~~~~~~~l~i~~~~  125 (148)
T 2oa2_A           98 ILIPAGTWHNVRNTGNRPLKLYSIYAPP  125 (148)
T ss_dssp             EEECTTCEEEEEECSSSCEEEEEEEESC
T ss_pred             EEECCCCcEEEEECCCCCEEEEEEECCC
Confidence            9999999999999988899988876554

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=98.96  E-value=2e-09  Score=99.14  Aligned_cols=86  Identities=20%  Similarity=0.224  Sum_probs=70.1

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..+.|.||+...+||| ...+++||++|++.+.+-.....-                    ....-...|++||++
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H-~~~E~~~Vl~G~~~~~~~~~~~~~--------------------~~~~~~~~l~~Gd~i   98 (163)
T 1lr5_A           40 EVEVWLQTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKY--------------------PGQPQEIPFFQNTTF   98 (163)
T ss_dssp             SEEEEEEEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSS--------------------CCSCEEEEECTTEEE
T ss_pred             cEEEEEEEECCCCcCCCeEC-CCCeEEEEEeCEEEEEECCccccc--------------------cCccEEEEeCCCCEE
Confidence            58889999999999999999 578999999999999887642100                    001234689999999


Q ss_pred             EeCCCCeEEEEcCC-CCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASP-NEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~g-ne~l~~v~F~~na  463 (539)
                      +||+|.+|.+.|.+ ++++.++++...+
T Consensus        99 ~ip~~~~H~~~n~~~~~~~~~l~i~~~~  126 (163)
T 1lr5_A           99 SIPVNDPHQVWNSDEHEDLQVLVIISRP  126 (163)
T ss_dssp             EECTTCCEEEECCCSSSCEEEEEEEESS
T ss_pred             EECCCCcEEeEeCCCCCCEEEEEEECCC
Confidence            99999999999998 8899999876554

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=98.95  E-value=3e-09  Score=97.69  Aligned_cols=79  Identities=18%  Similarity=0.292  Sum_probs=69.1

Q ss_pred             cceeEEEEEEcCCc-eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          356 IDAGVTYVEINQGG-MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       356 l~isva~v~L~pGg-m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      .++.+..+.|.||+ ...+|||+...+++||++|++.+.+-.                           +.  ..|++||
T Consensus        44 ~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~---------------------------~~--~~l~~Gd   94 (162)
T 3l2h_A           44 RHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEN---------------------------DQ--YPIAPGD   94 (162)
T ss_dssp             CSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETT---------------------------EE--EEECTTC
T ss_pred             CeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECC---------------------------EE--EEeCCCC
Confidence            35899999999999 589999999999999999999987521                           12  5799999


Q ss_pred             EEEeCCC-CeEEEEcCCCCcEEEEEEeecC
Q 039441          435 VFIIPPG-HPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       435 V~vVPaG-~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +++||+| .+|.+.|.+++++.++++.+.+
T Consensus        95 ~i~i~~~~~~H~~~n~~~~~~~~l~v~~p~  124 (162)
T 3l2h_A           95 FVGFPCHAAAHSISNDGTETLVCLVIGQRL  124 (162)
T ss_dssp             EEEECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred             EEEECCCCceEEeEeCCCCCEEEEEEECCC
Confidence            9999998 9999999999999999887665

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=98.95  E-value=3.3e-09  Score=97.36  Aligned_cols=80  Identities=20%  Similarity=0.400  Sum_probs=68.7

Q ss_pred             CcceeeEEEeeeCCCe-eeccccc-CCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCC-CeEEEEecCCCceEE
Q 039441          197 GIDNYRLAILEANPST-LVVPHHS-DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAG-TTYYLSNQDNVDRLH  273 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~-l~lPh~~-dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG-~~h~i~N~g~~e~L~  273 (539)
                      |...+.+.++++.|++ ...+||| +..+++||++|++.+.+    ...++.|++||+++||+| ++|++.|.+ +++++
T Consensus        42 g~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~----~~~~~~l~~Gd~i~i~~~~~~H~~~n~~-~~~~~  116 (162)
T 3l2h_A           42 GLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM----ENDQYPIAPGDFVGFPCHAAAHSISNDG-TETLV  116 (162)
T ss_dssp             TCCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTSCCEEEECCS-SSCEE
T ss_pred             CCCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE----CCEEEEeCCCCEEEECCCCceEEeEeCC-CCCEE
Confidence            6667778888889999 5788988 89999999999999885    235799999999999998 999999998 58888


Q ss_pred             EEEEeccC
Q 039441          274 VAKLLQPV  281 (539)
Q Consensus       274 iv~l~d~~  281 (539)
                      ++.+..+.
T Consensus       117 ~l~v~~p~  124 (162)
T 3l2h_A          117 CLVIGQRL  124 (162)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCC
Confidence            88877653

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.93  E-value=1.6e-09  Score=92.76  Aligned_cols=81  Identities=14%  Similarity=0.166  Sum_probs=68.6

Q ss_pred             cccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCC
Q 039441          354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG  433 (539)
Q Consensus       354 ~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G  433 (539)
                      .+-.+.|.+++|.||+-...|+|+...++.||+.|++.++.  +++                        ......|++|
T Consensus        13 en~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~------------------------~~~~~~l~~G   66 (98)
T 3lag_A           13 DNDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDG------------------------TRSLAQLKTG   66 (98)
T ss_dssp             ESSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTS------------------------CEECCCBCTT
T ss_pred             cCCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCC------------------------ceEEEEecCC
Confidence            34468999999999999999999999999999999998754  333                        1234679999


Q ss_pred             cEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          434 VVFIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      |+++||+|..|.+.|.|+.+|.||.+.
T Consensus        67 ~~~~ip~G~~H~~~N~g~~pl~~IeVE   93 (98)
T 3lag_A           67 RSYARKAGVQHDVRNESTAEIVFLEIE   93 (98)
T ss_dssp             CCEEECTTCEEEEBCCSSSCEEEEEEE
T ss_pred             cEEEEcCCCcEECEECCCCeEEEEEEE
Confidence            999999999999999999999999864

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=98.92  E-value=6.9e-09  Score=86.27  Aligned_cols=76  Identities=16%  Similarity=0.216  Sum_probs=63.4

Q ss_pred             eeeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .+.+.++++.|++-.-+|+++ ..+++||++|++.+.+    ....+.|.+||+++||+|++|++.|.+ +++++++.++
T Consensus        27 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~~~v~  101 (105)
T 1v70_A           27 RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV----GEEEALLAPGMAAFAPAGAPHGVRNES-ASPALLLVVT  101 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTSCEEEECCS-SSCEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCC-CCCEEEEEEe
Confidence            355666777999988888776 4789999999999876    236899999999999999999999987 4778888777


Q ss_pred             cc
Q 039441          279 QP  280 (539)
Q Consensus       279 d~  280 (539)
                      .+
T Consensus       102 ~p  103 (105)
T 1v70_A          102 AP  103 (105)
T ss_dssp             ES
T ss_pred             CC
Confidence            64

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=98.92  E-value=7.5e-09  Score=87.73  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=64.9

Q ss_pred             eeeEEEeeeCCCeeeccc--ccC-CCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          200 NYRLAILEANPSTLVVPH--HSD-AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh--~~d-A~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      .+.+.++++.|++...+|  +++ ..+++||++|++.+.+    ...++.|++||+++||+|++|++.|.+ +++++++.
T Consensus        20 ~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~i~~~~~H~~~~~~-~~~~~~~~   94 (113)
T 2gu9_A           20 QVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV----DGHTQALQAGSLIAIERGQAHEIRNTG-DTPLKTVN   94 (113)
T ss_dssp             TEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE----TTEEEEECTTEEEEECTTCCEEEECCS-SSCEEEEE
T ss_pred             cEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEcCC-CCCEEEEE
Confidence            445666677999988777  777 8999999999999887    236799999999999999999999987 47788888


Q ss_pred             EeccCC
Q 039441          277 LLQPVN  282 (539)
Q Consensus       277 l~d~~n  282 (539)
                      ++.+..
T Consensus        95 v~~~~~  100 (113)
T 2gu9_A           95 FYHPPA  100 (113)
T ss_dssp             EEESCC
T ss_pred             EECCCC
Confidence            776543

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=98.90  E-value=1.2e-08  Score=86.37  Aligned_cols=80  Identities=19%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             ccceeEEEEEEcCCceecce--ecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCC
Q 039441          355 EIDAGVTYVEINQGGMMVPH--YNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSP  432 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PH--whpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~  432 (539)
                      .-++.+..+.+.||+...+|  ||++..+++||++|++.+.+   ++                        +.  ..|++
T Consensus        18 ~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~------------------------~~--~~l~~   68 (113)
T 2gu9_A           18 LRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DG------------------------HT--QALQA   68 (113)
T ss_dssp             ETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TT------------------------EE--EEECT
T ss_pred             CCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CC------------------------EE--EEeCC
Confidence            34688999999999999988  99779999999999999877   21                        12  57999


Q ss_pred             CcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          433 GVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       433 GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ||+++||+|.+|.+.|.+++++.++.+...+
T Consensus        69 Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~   99 (113)
T 2gu9_A           69 GSLIAIERGQAHEIRNTGDTPLKTVNFYHPP   99 (113)
T ss_dssp             TEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred             CCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence            9999999999999999888889988876543

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.89  E-value=6.1e-09  Score=103.17  Aligned_cols=104  Identities=14%  Similarity=0.134  Sum_probs=75.0

Q ss_pred             CCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEe-------cCC-CCccchhhhh
Q 039441          337 NNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMG-------GPL-SSRWSQESQR  408 (539)
Q Consensus       337 n~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV-------~p~-gs~~s~~~~~  408 (539)
                      +.+|.++.+-.   +...+.++++..+.+.||+...||||+++.|+.||++|++.+.+-       ... ..+  .    
T Consensus        25 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~--~----   95 (239)
T 2xlg_A           25 TPANEIFDIAS---CSAKDIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVG--G----   95 (239)
T ss_dssp             CTTCCEEEEEE---EEETTEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTT--T----
T ss_pred             cCCceEEEEec---cCCCCCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCccccc--c----
Confidence            34555544321   122344688999999999999999999999999999999999771       111 000  0    


Q ss_pred             hhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEE-EEEe
Q 039441          409 EQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLT-VGFS  460 (539)
Q Consensus       409 g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~-v~F~  460 (539)
                                 +..-+.....|++||+++||+|.+|.+.|.+++++.+ +.+.
T Consensus        96 -----------~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A           96 -----------AGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             -----------TCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEEEEE
T ss_pred             -----------cccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEE
Confidence                       0000345678999999999999999999998888887 5544

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=98.89  E-value=8.7e-09  Score=96.18  Aligned_cols=80  Identities=8%  Similarity=0.158  Sum_probs=68.7

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+-+.++++.|++...+||+...+++||++|++.+.+    +..++.|++||+++||+|++|++.|.+.++++++++++
T Consensus        54 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~  129 (167)
T 3ibm_A           54 PAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL----DDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIV  129 (167)
T ss_dssp             SSEEEEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE----TTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEE
T ss_pred             CcEEEEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEE
Confidence            35566777889999999999999999999999999876    23589999999999999999999999844789888888


Q ss_pred             ccCC
Q 039441          279 QPVN  282 (539)
Q Consensus       279 d~~n  282 (539)
                      .+..
T Consensus       130 ~~~~  133 (167)
T 3ibm_A          130 DSDR  133 (167)
T ss_dssp             ESSC
T ss_pred             eCCc
Confidence            7643

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=98.89  E-value=9.9e-09  Score=88.77  Aligned_cols=75  Identities=20%  Similarity=0.307  Sum_probs=62.7

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceee-ecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESF-NMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~-~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .+.+.++++.|++..-+||++..+++||++|++.+.+   + ...+ .|++||+++||+|++|++.|.+ +.++.++.+.
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~-~~~~~~l~~Gd~i~ip~~~~H~~~~~~-~~~~~~l~i~  100 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---E-DQEPHNYKEGNIVYVPFNVKMLIQNIN-SDILEFFVVK  100 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE---T-TSCCEEEETTCEEEECTTCEEEEECCS-SSEEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE---C-CEEEEEeCCCCEEEECCCCcEEeEcCC-CCCEEEEEEE
Confidence            4455666779999888999999999999999999887   2 2456 9999999999999999999998 4778777764


Q ss_pred             c
Q 039441          279 Q  279 (539)
Q Consensus       279 d  279 (539)
                      .
T Consensus       101 ~  101 (117)
T 2b8m_A          101 A  101 (117)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.87  E-value=1.3e-08  Score=96.92  Aligned_cols=81  Identities=21%  Similarity=0.228  Sum_probs=68.2

Q ss_pred             eeeEEEeeeCCCee------ecccccC---CCcEEEEEeceEEEEEEeC-CCceeeecCCCcEEEeCCCCeEEEEecCCC
Q 039441          200 NYRLAILEANPSTL------VVPHHSD---AETILVLLKGKGVITLVSH-ERRESFNMEHGDVISVPAGTTYYLSNQDNV  269 (539)
Q Consensus       200 ~~Rl~il~l~P~~l------~lPh~~d---A~~~~yV~~G~g~i~~v~p-g~~~~~~v~~GDV~~iPaG~~h~i~N~g~~  269 (539)
                      ++.+.++++.|++.      ..+|||.   .++++||++|++.+.+-.. |....+.|++||+++||+|++|++.|.+ +
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g-~  144 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIG-D  144 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECS-S
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECC-c
Confidence            56677778899998      6688774   4799999999999998765 3445799999999999999999999998 5


Q ss_pred             ceEEEEEEeccC
Q 039441          270 DRLHVAKLLQPV  281 (539)
Q Consensus       270 e~L~iv~l~d~~  281 (539)
                      ++++++.++.+.
T Consensus       145 ~~~~~l~v~~~~  156 (190)
T 1x82_A          145 EPFIFLAIYPAD  156 (190)
T ss_dssp             SCEEEEEEEETT
T ss_pred             ccEEEEEEECCC
Confidence            789888887654

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=98.87  E-value=1.3e-08  Score=94.93  Aligned_cols=78  Identities=22%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .++.+..+.|.||+...+||| ...+++||++|++.+.+-.                           +  ...|++||+
T Consensus        54 ~~~~~~~~~l~pG~~~~~H~H-~~~E~~~Vl~G~~~~~i~~---------------------------~--~~~l~~Gd~  103 (167)
T 3ibm_A           54 PAFETRYFEVEPGGYTTLERH-EHTHVVMVVRGHAEVVLDD---------------------------R--VEPLTPLDC  103 (167)
T ss_dssp             SSEEEEEEEECTTCBCCCBBC-SSCEEEEEEESEEEEEETT---------------------------E--EEEECTTCE
T ss_pred             CcEEEEEEEECCCCCCCCccC-CCcEEEEEEeCEEEEEECC---------------------------E--EEEECCCCE
Confidence            358899999999999999999 5899999999999987621                           1  357999999


Q ss_pred             EEeCCCCeEEEEcCC-CCcEEEEEEeecC
Q 039441          436 FIIPPGHPIALVASP-NEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG~~h~i~n~g-ne~l~~v~F~~na  463 (539)
                      ++||+|.+|.+.|.+ ++++.++++...+
T Consensus       104 i~ip~~~~H~~~n~~~~~~~~~l~i~~~~  132 (167)
T 3ibm_A          104 VYIAPHAWHQIHATGANEPLGFLCIVDSD  132 (167)
T ss_dssp             EEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred             EEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence            999999999999998 8999999876554

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=98.85  E-value=1.8e-08  Score=87.78  Aligned_cols=76  Identities=16%  Similarity=0.192  Sum_probs=63.1

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+.+..+++.|++..-+||+..++++||++|++.+.+  .  ..++.|++||+++||+|++|++.|.+ +..+.++.++
T Consensus        34 ~~~~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~--~~~~~l~~Gd~i~ip~~~~H~~~~~~-~~~~~~~~v~  108 (114)
T 3fjs_A           34 HRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--D--GAQRRLHQGDLLYLGAGAAHDVNAIT-NTSLLVTVVL  108 (114)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--T--TEEEEECTTEEEEECTTCCEEEEESS-SEEEEEEEEC
T ss_pred             CCEEEEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--C--CEEEEECCCCEEEECCCCcEEEEeCC-CcEEEEEEEe
Confidence            45667777779999999999999999999999999886  2  24799999999999999999999997 4556555544


Q ss_pred             c
Q 039441          279 Q  279 (539)
Q Consensus       279 d  279 (539)
                      .
T Consensus       109 p  109 (114)
T 3fjs_A          109 V  109 (114)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.85  E-value=1.2e-08  Score=86.01  Aligned_cols=79  Identities=19%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .++.+..++|.||+-..+|.|+...+++||++|++.+.+-+.                           .....|++||+
T Consensus        16 ~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g---------------------------~~~~~l~~Gd~   68 (97)
T 2fqp_A           16 ERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEG---------------------------SVTSQLTRGVS   68 (97)
T ss_dssp             SSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTE---------------------------EEEEEECTTCC
T ss_pred             CeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCC---------------------------CEEEEEcCCCE
Confidence            358899999999999999999877789999999999876321                           02357999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      +++|+|.+|.+.|.+++++.+|.+..
T Consensus        69 ~~~p~~~~H~~~N~g~~~~~~l~v~~   94 (97)
T 2fqp_A           69 YTRPEGVEHNVINPSDTEFVFVEIEI   94 (97)
T ss_dssp             EEECTTCEEEEECCSSSCEEEEEEEE
T ss_pred             EEeCCCCcccCEeCCCCcEEEEEEEE
Confidence            99999999999999999999987653

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=98.83  E-value=2.2e-08  Score=90.89  Aligned_cols=83  Identities=13%  Similarity=0.197  Sum_probs=65.8

Q ss_pred             eeeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEeCCC--ceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          200 NYRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVSHER--RESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~--~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      .+.+.++++.|++...+||++ .++++||++|++.+.+-....  ..++.|.+||+++||+|++|++.|.+ +++++++.
T Consensus        42 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~-~~~~~~l~  120 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTG-NRPLKLYS  120 (148)
T ss_dssp             SCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECS-SSCEEEEE
T ss_pred             ceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECC-CCCEEEEE
Confidence            345666677999988899876 569999999999998743221  12489999999999999999999998 57788888


Q ss_pred             EeccCCC
Q 039441          277 LLQPVNT  283 (539)
Q Consensus       277 l~d~~n~  283 (539)
                      ++.+...
T Consensus       121 i~~~~~~  127 (148)
T 2oa2_A          121 IYAPPQH  127 (148)
T ss_dssp             EEESCCS
T ss_pred             EECCCCC
Confidence            7766543

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.83  E-value=3.3e-08  Score=86.27  Aligned_cols=75  Identities=21%  Similarity=0.309  Sum_probs=64.2

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+.+.++++.|++..-+|+|...+++||++|++.+.+    ....+.|.+||+++||+|++|.+.|.++  .++++.++.
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~~l~v~~  113 (126)
T 4e2g_A           40 NLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI----GEETRVLRPGMAYTIPGGVRHRARTFED--GCLVLDIFS  113 (126)
T ss_dssp             SCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE----TTEEEEECTTEEEEECTTCCEEEECCTT--CEEEEEEEE
T ss_pred             CeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEECCC--CEEEEEEEC
Confidence            4566677779999999999999999999999999877    2357999999999999999999999974  577777776


Q ss_pred             c
Q 039441          280 P  280 (539)
Q Consensus       280 ~  280 (539)
                      +
T Consensus       114 p  114 (126)
T 4e2g_A          114 P  114 (126)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=98.83  E-value=2.2e-08  Score=86.51  Aligned_cols=76  Identities=12%  Similarity=0.244  Sum_probs=64.9

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEe-eeCCCcE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISA-NLSPGVV  435 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~-~L~~GDV  435 (539)
                      ++.+..+.+.||+...+||| ...+++||++|++.+.+-..                           .  . .|++||+
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H-~~~e~~~Vl~G~~~~~i~~~---------------------------~--~~~l~~Gd~   75 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYS-NSYVHLIIIKGEMTLTLEDQ---------------------------E--PHNYKEGNI   75 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEEC-SSCEEEEEEESEEEEEETTS---------------------------C--CEEEETTCE
T ss_pred             ceEEEEEEECCCCcCCCEeC-CCcEEEEEEeCEEEEEECCE---------------------------E--EEEeCCCCE
Confidence            57788899999999999999 67899999999999887211                           1  4 7999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      ++||+|.+|.+.|.++.++.++.+...
T Consensus        76 i~ip~~~~H~~~~~~~~~~~~l~i~~~  102 (117)
T 2b8m_A           76 VYVPFNVKMLIQNINSDILEFFVVKAP  102 (117)
T ss_dssp             EEECTTCEEEEECCSSSEEEEEEEECS
T ss_pred             EEECCCCcEEeEcCCCCCEEEEEEECC
Confidence            999999999999998888888887543

>2l37_A Ribosome-inactivating protein luffin P1; hydrolase; NMR {Luffa aegyptiaca}

Probab=98.82  E-value=2.9e-09  Score=78.19  Aligned_cols=41  Identities=29%  Similarity=0.653  Sum_probs=37.7

Q ss_pred             CCchhhHHHHHHHhhhhccchHhHHHHHHHHHHHHhhhhhh
Q 039441           99 RDPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQKGQRR  139 (539)
Q Consensus        99 ~~p~~~~~~c~~~c~~~~~~~~~~~~c~~~c~~~~~~~~~~  139 (539)
                      .||.++|.+|+++|+.+.++++++.+|+++|+++|++++++
T Consensus         1 ~dP~~el~~C~~~C~~q~q~~eq~q~C~qrCee~y~e~~~~   41 (43)
T 2l37_A            1 GSPRTEYEACRVRCQVAEHGVERQRRCQQVCEKRLREREGR   41 (43)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhcc
Confidence            48999999999999999998898899999999999988754

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=98.79  E-value=1.4e-08  Score=90.39  Aligned_cols=80  Identities=18%  Similarity=0.236  Sum_probs=67.0

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+.+.++++.|++...+|||+..+++||++|++.+.+...+  .++.|++||+++||+|++|++.|.+ +++++++.++
T Consensus        37 ~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~--~~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~l~i~  113 (145)
T 3ht1_A           37 DRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQG--RTEEVGPGEAIFIPRGEPHGFVTGP-GQTCRFLVVA  113 (145)
T ss_dssp             CSEEEEEEEEEEEEECCCEECSSCEEEEEEEECEEEEEGGGT--EEEEECTTCEEEECTTCCBEEECCT-TCCEEEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEeECC--EEEEECCCCEEEECCCCeEEeEcCC-CCCEEEEEEE
Confidence            456677777799999999999999999999999988742333  6899999999999999999999998 4678877777


Q ss_pred             ccC
Q 039441          279 QPV  281 (539)
Q Consensus       279 d~~  281 (539)
                      .+.
T Consensus       114 ~~~  116 (145)
T 3ht1_A          114 PCE  116 (145)
T ss_dssp             ESC
T ss_pred             CCC
Confidence            543

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.79  E-value=4.3e-08  Score=85.50  Aligned_cols=76  Identities=17%  Similarity=0.230  Sum_probs=64.2

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      -++.+..+.+.||+...+|||+. .+++||++|++.+.+   ++                        +.  ..|++||+
T Consensus        39 ~~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~---~~------------------------~~--~~l~~Gd~   88 (126)
T 4e2g_A           39 KNLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI---GE------------------------ET--RVLRPGMA   88 (126)
T ss_dssp             SSCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEE---TT------------------------EE--EEECTTEE
T ss_pred             CCeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEE---CC------------------------EE--EEeCCCCE
Confidence            36899999999999999999975 899999999999977   21                        12  57999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      ++||+|.+|.+.|.++ ++.++.+.+.
T Consensus        89 ~~ip~~~~H~~~~~~~-~~~~l~v~~p  114 (126)
T 4e2g_A           89 YTIPGGVRHRARTFED-GCLVLDIFSP  114 (126)
T ss_dssp             EEECTTCCEEEECCTT-CEEEEEEEES
T ss_pred             EEECCCCcEEeEECCC-CEEEEEEECC
Confidence            9999999999999876 6777765543

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.78  E-value=4.5e-08  Score=92.28  Aligned_cols=77  Identities=8%  Similarity=0.040  Sum_probs=62.6

Q ss_pred             eeEEEeeeCCCeeec---ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec-CCCceEEEEE
Q 039441          201 YRLAILEANPSTLVV---PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ-DNVDRLHVAK  276 (539)
Q Consensus       201 ~Rl~il~l~P~~l~l---Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~-g~~e~L~iv~  276 (539)
                      +.+.++++.|++...   +||++..+++||++|++.+.+=..+....+.|++||.++||+|++|++.|. + +++++++.
T Consensus       117 ~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~-~~~~~~l~  195 (198)
T 2bnm_A          117 LVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKG-TGSAKLIA  195 (198)
T ss_dssp             CEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTT-SCCEEEEE
T ss_pred             ceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeCCCCceEEEecCC-CCCeEEEE
Confidence            444555569999776   588888999999999999987333344789999999999999999999999 7 47787776


Q ss_pred             Ee
Q 039441          277 LL  278 (539)
Q Consensus       277 l~  278 (539)
                      ++
T Consensus       196 v~  197 (198)
T 2bnm_A          196 VN  197 (198)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.78  E-value=2.5e-08  Score=92.53  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             CcccCCCceEEEeCCcccccccccceeEEEEEEcCCcee-cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhh
Q 039441          333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMM-VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQ  411 (539)
Q Consensus       333 p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~-~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~  411 (539)
                      |......|..+..-.   +.+....+.+..+.|.||+.. .+|||+...+++||++|++.+.+-.               
T Consensus        21 p~~~~~~G~~~~~l~---~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~---------------   82 (163)
T 3i7d_A           21 RLNAAMDGRSSLRLG---DAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQ---------------   82 (163)
T ss_dssp             GGGGGGTTEEEEEHH---HHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETT---------------
T ss_pred             CccccCCCeEEEEcc---cCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECC---------------
Confidence            333455677554432   223334689999999999965 7999987789999999999987622               


Q ss_pred             HHHHHHhhhcceeeEEeeeCCCcEEEeCCC--CeEEEEcCCCCcEEEEEEeecC
Q 039441          412 EEEEEEESSRELQKISANLSPGVVFIIPPG--HPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       412 ~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG--~~h~i~n~gne~l~~v~F~~na  463 (539)
                                  +  ...|++||+++||+|  .+|.+.|.+++++.++++.+.+
T Consensus        83 ------------~--~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~  122 (163)
T 3i7d_A           83 ------------G--EHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRT  122 (163)
T ss_dssp             ------------E--EEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred             ------------E--EEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence                        1  257999999999999  9999999999999999887665

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.78  E-value=1.5e-08  Score=85.48  Aligned_cols=77  Identities=10%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             ceeeEEEeeeCCCeeecccccCCC-cEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAE-TILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~-~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      ..+.+..+++.|++-.-+|+|..+ +++||++|++.+.+  .++...+.|.+||+++||+|++|++.|.+ +++++++.+
T Consensus        16 ~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g-~~~~~~l~v   92 (97)
T 2fqp_A           16 ERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGSVTSQLTRGVSYTRPEGVEHNVINPS-DTEFVFVEI   92 (97)
T ss_dssp             SSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEEEEEEECTTCCEEECTTCEEEEECCS-SSCEEEEEE
T ss_pred             CeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCCEEEEEcCCCEEEeCCCCcccCEeCC-CCcEEEEEE
Confidence            345566667799998778877776 59999999998875  22226889999999999999999999998 467777665


Q ss_pred             e
Q 039441          278 L  278 (539)
Q Consensus       278 ~  278 (539)
                      -
T Consensus        93 ~   93 (97)
T 2fqp_A           93 E   93 (97)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.76  E-value=5.1e-08  Score=90.27  Aligned_cols=78  Identities=19%  Similarity=0.305  Sum_probs=67.7

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .++.+..+.|.||+...+|||+ ..+++||++|++.+.+ .  +                        +  ...|++||+
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~v~v-~--g------------------------~--~~~l~~Gd~   91 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHA-HVHAVMIHRGHGQCLV-G--E------------------------T--ISDVAQGDL   91 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCS-SCEEEEEEEEEEEEEE-T--T------------------------E--EEEEETTCE
T ss_pred             CcEEEEEEEECCCCccCceeCC-CcEEEEEEeCEEEEEE-C--C------------------------E--EEEeCCCCE
Confidence            4688899999999999999995 5799999999999875 2  1                        2  257999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ++||+|.+|.+.|.+++++.++++....
T Consensus        92 i~ip~~~~H~~~n~g~~~~~~l~i~~~~  119 (156)
T 3kgz_A           92 VFIPPMTWHQFRANRGDCLGFLCVVNAA  119 (156)
T ss_dssp             EEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred             EEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence            9999999999999999999999877654

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.75  E-value=4.4e-08  Score=85.77  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=66.3

Q ss_pred             ccccceeEEEEEEcCCceec-ceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeC
Q 039441          353 LQEIDAGVTYVEINQGGMMV-PHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLS  431 (539)
Q Consensus       353 L~~l~isva~v~L~pGgm~~-PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~  431 (539)
                      +...++.+..+.+.||+... ||||+....+.||++|++.+.+-   +                        +.  ..|+
T Consensus        21 ~~~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~---~------------------------~~--~~l~   71 (125)
T 3cew_A           21 LALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID---G------------------------EK--IELQ   71 (125)
T ss_dssp             HTCSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET---T------------------------EE--EEEE
T ss_pred             cCCCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC---C------------------------EE--EEeC
Confidence            33456888899999999988 89995554566699999998762   1                        22  5799


Q ss_pred             CCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          432 PGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       432 ~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +||+++||+|.+|.+.|.+++++.++++...+
T Consensus        72 ~Gd~i~i~~~~~H~~~~~~~~~~~~~~i~~~~  103 (125)
T 3cew_A           72 AGDWLRIAPDGKRQISAASDSPIGFLCIQVKA  103 (125)
T ss_dssp             TTEEEEECTTCCEEEEEBTTBCEEEEEEEEET
T ss_pred             CCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence            99999999999999999888889888776554

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.75  E-value=5.7e-08  Score=85.00  Aligned_cols=77  Identities=12%  Similarity=0.201  Sum_probs=66.9

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      ..+.+..+.+.||+...+||| +..+++||++|++.+.+   ++                        +  ...|++||+
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H-~~~Ei~~v~~G~~~~~i---~~------------------------~--~~~l~~Gd~   81 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSH-NEYELFIVIQGNAIIRI---ND------------------------E--DFPVTKGDL   81 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCC-SSEEEEEEEESEEEEEE---TT------------------------E--EEEEETTCE
T ss_pred             CCcEEEEEEECCCCccCCEec-CCeEEEEEEeCEEEEEE---CC------------------------E--EEEECCCcE
Confidence            458889999999999999999 79999999999999877   22                        1  257999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      ++||+|.+|.+.|.+++++.++++..+
T Consensus        82 ~~i~~~~~H~~~~~~~~~~~~~~i~f~  108 (128)
T 4i4a_A           82 IIIPLDSEHHVINNNQEDFHFYTIWWD  108 (128)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEEEEEC
T ss_pred             EEECCCCcEEeEeCCCCCEEEEEEEEC
Confidence            999999999999988888888876544

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.75  E-value=4.5e-08  Score=84.06  Aligned_cols=73  Identities=10%  Similarity=0.009  Sum_probs=61.6

Q ss_pred             eeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          201 YRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      +.+..+++.|++..-+|+|+..+++||++|++.+.+    ....+.|.+||+++||+|++|++.|.+   +++++.++.+
T Consensus        34 ~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~l~v~~p  106 (116)
T 2pfw_A           34 LMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV----DGVIKVLTAGDSFFVPPHVDHGAVCPT---GGILIDTFSP  106 (116)
T ss_dssp             EEEEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEEESS---CEEEEEEEES
T ss_pred             eEEEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE----CCEEEEeCCCCEEEECcCCceeeEeCC---CcEEEEEECC
Confidence            556667779999888899999999999999999887    235899999999999999999999987   3566666654

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.75  E-value=3.5e-08  Score=91.57  Aligned_cols=80  Identities=15%  Similarity=0.250  Sum_probs=67.6

Q ss_pred             CcceeeEEEeeeCCCeee-cccccCC-CcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCC--CeEEEEecCCCceE
Q 039441          197 GIDNYRLAILEANPSTLV-VPHHSDA-ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAG--TTYYLSNQDNVDRL  272 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~-lPh~~dA-~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG--~~h~i~N~g~~e~L  272 (539)
                      +...+.+.++++.|++.. .+|||.. ++++||++|++.+.+    ...++.|++||+++||+|  ++|++.|.+ ++++
T Consensus        39 ~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~----~~~~~~l~~GD~i~ip~~~~~~H~~~n~~-~~~~  113 (163)
T 3i7d_A           39 GLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD----DQGEHPMVPGDCAAFPAGDPNGHQFVNRT-DAPA  113 (163)
T ss_dssp             TCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCCCBEEECCS-SSCE
T ss_pred             CCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE----CCEEEEeCCCCEEEECCCCCcceEEEECC-CCCE
Confidence            556677888888999966 5887776 799999999999886    225899999999999999  999999998 5788


Q ss_pred             EEEEEeccC
Q 039441          273 HVAKLLQPV  281 (539)
Q Consensus       273 ~iv~l~d~~  281 (539)
                      +++.+..+.
T Consensus       114 ~~l~v~~p~  122 (163)
T 3i7d_A          114 TFLVVGTRT  122 (163)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEECCC
Confidence            888888754

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=98.75  E-value=4.2e-08  Score=87.23  Aligned_cols=80  Identities=20%  Similarity=0.321  Sum_probs=66.6

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .++.+..+.+.||+...+|||+ ..+++||++|++.+.+...+                         +  ...|++||+
T Consensus        37 ~~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~~~~~-------------------------~--~~~l~~Gd~   88 (145)
T 3ht1_A           37 DRFVLTEFEVSPNGSTPPHFHE-WEHEIYVLEGSMGLVLPDQG-------------------------R--TEEVGPGEA   88 (145)
T ss_dssp             CSEEEEEEEEEEEEECCCEECS-SCEEEEEEEECEEEEEGGGT-------------------------E--EEEECTTCE
T ss_pred             CcEEEEEEEECCCCcCCCccCC-CceEEEEEEeEEEEEEeECC-------------------------E--EEEECCCCE
Confidence            3688999999999999999995 56778999999998742222                         1  257999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ++||+|.+|.+.|.+++++.++.+...+
T Consensus        89 ~~ip~~~~H~~~~~~~~~~~~l~i~~~~  116 (145)
T 3ht1_A           89 IFIPRGEPHGFVTGPGQTCRFLVVAPCE  116 (145)
T ss_dssp             EEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred             EEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence            9999999999999988899988876554

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.75  E-value=3.4e-08  Score=88.14  Aligned_cols=75  Identities=15%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+.+..+.+.||+...+|||+...+++||++|++.+.+-   +                        +  ...|++||++
T Consensus        56 ~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~---~------------------------~--~~~l~~Gd~i  106 (133)
T 1o4t_A           56 ARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN---G------------------------K--DVPIKAGDVC  106 (133)
T ss_dssp             EEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET---T------------------------E--EEEEETTEEE
T ss_pred             eEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEEC---C------------------------E--EEEeCCCcEE
Confidence            467889999999999999997789999999999998762   1                        1  2579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      +||+|.+|.+.|.+++++.++++.
T Consensus       107 ~i~~~~~H~~~n~~~~~~~~l~v~  130 (133)
T 1o4t_A          107 FTDSGESHSIENTGNTDLEFLAVI  130 (133)
T ss_dssp             EECTTCEEEEECCSSSCEEEEEEE
T ss_pred             EECCCCcEEeEECCCCCEEEEEEE
Confidence            999999999999988899888764

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.75  E-value=2.7e-08  Score=92.09  Aligned_cols=78  Identities=12%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+-+.++++.|++..-+||++..+++||++|++.+.+    +.+++.|.+||+++||+|++|.+.|.+ ++++++++++
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v----~g~~~~l~~Gd~i~ip~~~~H~~~n~g-~~~~~~l~i~  116 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV----GETISDVAQGDLVFIPPMTWHQFRANR-GDCLGFLCVV  116 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCCEEEECCS-SSCEEEEEEE
T ss_pred             CcEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence            34556666779999999999999999999999999986    235899999999999999999999998 5889888888


Q ss_pred             ccC
Q 039441          279 QPV  281 (539)
Q Consensus       279 d~~  281 (539)
                      ...
T Consensus       117 ~~~  119 (156)
T 3kgz_A          117 NAA  119 (156)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            643

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.73  E-value=3.2e-08  Score=92.57  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+-+.++++.|++...+||+...+++||++|++.+.+    +..++.|.+||+++||+|++|++.|.+ +++++++++.
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v----~g~~~~l~~GD~i~ip~g~~H~~~n~~-~~~~~~l~i~  125 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV----GRAVSAVAPYDLVTIPGWSWHQFRAPA-DEALGFLCMV  125 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEECCT-TSCEEEEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence            34556667789999999999999999999999999876    235899999999999999999999998 5888888877


Q ss_pred             cc
Q 039441          279 QP  280 (539)
Q Consensus       279 d~  280 (539)
                      .+
T Consensus       126 ~~  127 (166)
T 3jzv_A          126 NA  127 (166)
T ss_dssp             ES
T ss_pred             cc
Confidence            64

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.73  E-value=7.4e-08  Score=90.12  Aligned_cols=78  Identities=18%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .++.+..+.|.||+...+|||+ ..+++||++|++.+.+   ++                        +  ...|++||+
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~~~v---~g------------------------~--~~~l~~GD~  100 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQ-HAHGVMILKGRGHAMV---GR------------------------A--VSAVAPYDL  100 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCS-SCEEEEEEEECEEEEE---TT------------------------E--EEEECTTCE
T ss_pred             CeEEEEEEEECCCCccCceeCC-CcEEEEEEeCEEEEEE---CC------------------------E--EEEeCCCCE
Confidence            4688899999999999999996 5799999999999865   21                        2  257999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ++||+|.+|.+.|.+++++.++++....
T Consensus       101 i~ip~g~~H~~~n~~~~~~~~l~i~~~~  128 (166)
T 3jzv_A          101 VTIPGWSWHQFRAPADEALGFLCMVNAE  128 (166)
T ss_dssp             EEECTTCCEEEECCTTSCEEEEEEEESS
T ss_pred             EEECCCCcEEeEeCCCCCEEEEEEEccC
Confidence            9999999999999999999999876554

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.72  E-value=5.8e-08  Score=84.91  Aligned_cols=73  Identities=19%  Similarity=0.409  Sum_probs=60.8

Q ss_pred             eeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          201 YRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      +.+..+++.|+....|||++..+++||++|++.+.+    +..++.|++||++.||+|++|++.|.+ ++++.++.+.
T Consensus        34 ~~~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i----~~~~~~l~~Gd~~~i~~~~~H~~~~~~-~~~~~~~~i~  106 (128)
T 4i4a_A           34 FGGAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI----NDEDFPVTKGDLIIIPLDSEHHVINNN-QEDFHFYTIW  106 (128)
T ss_dssp             SEEEEEEECTTEECCCBCCSSEEEEEEEESEEEEEE----TTEEEEEETTCEEEECTTCCEEEEECS-SSCEEEEEEE
T ss_pred             cEEEEEEECCCCccCCEecCCeEEEEEEeCEEEEEE----CCEEEEECCCcEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence            334445559999999999999999999999999887    335899999999999999999999987 4666665544

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.71  E-value=1.7e-08  Score=86.29  Aligned_cols=76  Identities=13%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             eeeEEEeeeCCCeeecccccCCC-cEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          200 NYRLAILEANPSTLVVPHHSDAE-TILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~-~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .+|+.-++++|++-+-.|+|..+ ++.||+.|+++|.. ..+......+.+||.++||+|+.|++.|.| +.+|+||-+
T Consensus        16 ~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~-~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g-~~pl~~IeV   92 (98)
T 3lag_A           16 EVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA-PDGTRSLAQLKTGRSYARKAGVQHDVRNES-TAEIVFLEI   92 (98)
T ss_dssp             SEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC-TTSCEECCCBCTTCCEEECTTCEEEEBCCS-SSCEEEEEE
T ss_pred             eEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe-CCCceEEEEecCCcEEEEcCCCcEECEECC-CCeEEEEEE
Confidence            45556666699999988866555 66677799988754 223345788999999999999999999999 688988765

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.70  E-value=8.4e-08  Score=87.33  Aligned_cols=97  Identities=24%  Similarity=0.316  Sum_probs=76.0

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .++.+..+.+.||+...+|||+. .+++||++|++.+.+=..                           . ...|.+||+
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~~~~---------------------------~-~~~l~~Gd~   96 (147)
T 2f4p_A           46 FNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERGK---------------------------P-ARILKKGDV   96 (147)
T ss_dssp             SSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETTS---------------------------C-CEEEETTCE
T ss_pred             CcEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEECCE---------------------------E-EEEECCCCE
Confidence            36889999999999999999965 899999999999875221                           1 146999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHH
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEV  488 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~  488 (539)
                      ++||+|.+|++.|.++.++.++++.......       ...||..+..+....
T Consensus        97 i~ip~~~~H~~~n~~~~~~~~l~v~~~~~~~-------~~~wl~~v~~e~~~~  142 (147)
T 2f4p_A           97 VEIPPNVVHWHGAAPDEELVHIGISTQVHLG-------PAEWLGSVTEEEYRK  142 (147)
T ss_dssp             EEECTTCCEEEEEBTTBCEEEEEEECCGGGC-------CCEECCCCCHHHHHH
T ss_pred             EEECCCCcEEeEeCCCCCEEEEEEEccCCCC-------CceecccCCHHHhhh
Confidence            9999999999999988899998876553111       135666666665544

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=98.70  E-value=6.5e-08  Score=85.58  Aligned_cols=74  Identities=14%  Similarity=0.328  Sum_probs=59.9

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+-+.++++.|++-. +.|.+.++++||++|++.+.+   + .+++.|++||+++||+|+.|++.|.+  +.++++.+..
T Consensus        39 ~~~~~~~~~~pG~~~-~~H~~~~E~~~Vl~G~~~~~~---~-g~~~~l~~GD~v~ip~g~~H~~~~~~--~~~~~l~v~~  111 (119)
T 3lwc_A           39 PITIGYGRYAPGQSL-TETMAVDDVMIVLEGRLSVST---D-GETVTAGPGEIVYMPKGETVTIRSHE--EGALTAYVTY  111 (119)
T ss_dssp             CCEEEEEEECTTCEE-EEECSSEEEEEEEEEEEEEEE---T-TEEEEECTTCEEEECTTCEEEEEEEE--EEEEEEEEEE
T ss_pred             CEEEEEEEECCCCCc-CccCCCCEEEEEEeCEEEEEE---C-CEEEEECCCCEEEECCCCEEEEEcCC--CCeEEEEEEC
Confidence            455667777999855 444599999999999999988   2 36889999999999999999998875  5666777665


Q ss_pred             c
Q 039441          280 P  280 (539)
Q Consensus       280 ~  280 (539)
                      |
T Consensus       112 P  112 (119)
T 3lwc_A          112 P  112 (119)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.69  E-value=4.9e-08  Score=86.05  Aligned_cols=79  Identities=9%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      ..++.+..+.+.||+...+|||+ ..+++||++|++.+.+-   +                        +.  ..|++||
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i~---~------------------------~~--~~l~~Gd   94 (126)
T 1vj2_A           45 APNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLKE---Q------------------------GE--ETVEEGF   94 (126)
T ss_dssp             CSSEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEECS---S------------------------CE--EEEETTE
T ss_pred             CCCEEEEEEEECCCCcCCceeCC-CcEEEEEEEeEEEEEEC---C------------------------EE--EEECCCC
Confidence            34688999999999999999995 88999999999988752   1                        12  5799999


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          435 VFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +++||+|.+|.+.|.+++++.++++...+
T Consensus        95 ~i~ip~g~~H~~~~~~~~~~~~l~v~~~~  123 (126)
T 1vj2_A           95 YIFVEPNEIHGFRNDTDSEVEFLCLIPKE  123 (126)
T ss_dssp             EEEECTTCCEEEECCSSSCEEEEEEEEGG
T ss_pred             EEEECCCCcEEeEeCCCCCEEEEEEEccC
Confidence            99999999999999888889988876543

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.69  E-value=2e-07  Score=87.86  Aligned_cols=81  Identities=14%  Similarity=0.118  Sum_probs=66.8

Q ss_pred             cccceeEEEEEEcCCceec---ceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeee
Q 039441          354 QEIDAGVTYVEINQGGMMV---PHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANL  430 (539)
Q Consensus       354 ~~l~isva~v~L~pGgm~~---PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L  430 (539)
                      ....+.+..+.|.||+...   +|||+. .+++||++|++.+.+-..+.                         .-...|
T Consensus       113 ~~~~~~~~~~~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~~~~-------------------------~~~~~l  166 (198)
T 2bnm_A          113 RAPSLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGDKEN-------------------------PKEALL  166 (198)
T ss_dssp             TSTTCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESCTTS-------------------------CEEEEE
T ss_pred             CCCcceEEEEEEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECCcCC-------------------------cccEEE
Confidence            3456889999999999987   588855 89999999999998744211                         233689


Q ss_pred             CCCcEEEeCCCCeEEEEcC-CCCcEEEEEEe
Q 039441          431 SPGVVFIIPPGHPIALVAS-PNEKLLTVGFS  460 (539)
Q Consensus       431 ~~GDV~vVPaG~~h~i~n~-gne~l~~v~F~  460 (539)
                      ++||.++||++.+|.+.|. +++++.++++.
T Consensus       167 ~~GD~~~~~~~~~H~~~n~~~~~~~~~l~v~  197 (198)
T 2bnm_A          167 PTGASMFVEEHVPHAFTAAKGTGSAKLIAVN  197 (198)
T ss_dssp             CTTCEEEECTTCCEEEEESTTSCCEEEEEEE
T ss_pred             CCCCEEEeCCCCceEEEecCCCCCeEEEEEe
Confidence            9999999999999999998 88899888754

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.69  E-value=5.1e-08  Score=101.53  Aligned_cols=77  Identities=14%  Similarity=0.141  Sum_probs=67.9

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+.+..+.|.||+...|||| ...+|.||++|+|.++.|+.                          +.  ..|++||+|
T Consensus        99 ~l~~~~~~l~PG~~~~~H~H-~~~e~~yVl~G~g~~t~v~g--------------------------~~--~~l~~GD~~  149 (354)
T 2d40_A           99 TLYAGLQLIMPGEVAPSHRH-NQSALRFIVEGKGAFTAVDG--------------------------ER--TPMNEGDFI  149 (354)
T ss_dssp             SCEEEEEEECTTCEEEEEEE-SSCEEEEEEECSSCEEEETT--------------------------EE--EECCTTCEE
T ss_pred             cEEEEEEEECCCCCcCCeec-CcceEEEEEEEEEEEEEECC--------------------------EE--EEEcCCCEE
Confidence            58899999999999999999 57799999999999877754                          23  579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +||+|.+|.+.|.+++++.|++|.+.
T Consensus       150 ~iP~g~~H~~~n~~~~~~~~l~v~d~  175 (354)
T 2d40_A          150 LTPQWRWHDHGNPGDEPVIWLDGLDL  175 (354)
T ss_dssp             EECTTSCEEEECCSSSCEEEEEEECH
T ss_pred             EECCCCcEEeEeCCCCCEEEEEEECc
Confidence            99999999999999999999987643

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.69  E-value=9.7e-08  Score=83.55  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             ceeeEEEeeeCCCeeec-ccccCCCcEEE-EEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          199 DNYRLAILEANPSTLVV-PHHSDAETILV-LLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~l-Ph~~dA~~~~y-V~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      ..+.+.++++.|++... |||++..+++| |++|++.+.+    ....+.|++||+++||+|++|++.|.+ ++++.++.
T Consensus        24 ~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i----~~~~~~l~~Gd~i~i~~~~~H~~~~~~-~~~~~~~~   98 (125)
T 3cew_A           24 TGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI----DGEKIELQAGDWLRIAPDGKRQISAAS-DSPIGFLC   98 (125)
T ss_dssp             SSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE----TTEEEEEETTEEEEECTTCCEEEEEBT-TBCEEEEE
T ss_pred             CCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCcEEEEcCC-CCCEEEEE
Confidence            44556667779999886 79888776555 9999999887    236799999999999999999999987 46787777


Q ss_pred             EeccCC
Q 039441          277 LLQPVN  282 (539)
Q Consensus       277 l~d~~n  282 (539)
                      +..+.+
T Consensus        99 i~~~~~  104 (125)
T 3cew_A           99 IQVKAG  104 (125)
T ss_dssp             EEEETT
T ss_pred             EEcCCc
Confidence            665544

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.68  E-value=4.8e-08  Score=86.13  Aligned_cols=76  Identities=20%  Similarity=0.243  Sum_probs=62.9

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+.+.++++.|++...+|+++..+++||++|++.+.+  .  ..++.|.+||+++||+|++|++.|.+ ++++.++.++.
T Consensus        47 ~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~--~~~~~l~~Gd~i~ip~g~~H~~~~~~-~~~~~~l~v~~  121 (126)
T 1vj2_A           47 NFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--E--QGEETVEEGFYIFVEPNEIHGFRNDT-DSEVEFLCLIP  121 (126)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC--S--SCEEEEETTEEEEECTTCCEEEECCS-SSCEEEEEEEE
T ss_pred             CEEEEEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE--C--CEEEEECCCCEEEECCCCcEEeEeCC-CCCEEEEEEEc
Confidence            3445566669999888999999999999999998876  2  35789999999999999999999987 46777776664


Q ss_pred             c
Q 039441          280 P  280 (539)
Q Consensus       280 ~  280 (539)
                      +
T Consensus       122 ~  122 (126)
T 1vj2_A          122 K  122 (126)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.68  E-value=1.9e-07  Score=83.24  Aligned_cols=73  Identities=21%  Similarity=0.286  Sum_probs=61.0

Q ss_pred             eeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          201 YRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      +-+..+++.|++-..||+++ ..+++||++|++.+.+    ...++.|.+||+++||+|++|++.|.+ +++++++.+.
T Consensus        57 ~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i----~~~~~~l~~Gd~i~i~~~~~H~~~n~~-~~~~~~l~v~  130 (133)
T 1o4t_A           57 RLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD----NGKDVPIKAGDVCFTDSGESHSIENTG-NTDLEFLAVI  130 (133)
T ss_dssp             EEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE----TTEEEEEETTEEEEECTTCEEEEECCS-SSCEEEEEEE
T ss_pred             EEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE----CCEEEEeCCCcEEEECCCCcEEeEECC-CCCEEEEEEE
Confidence            34556677999988888886 6999999999999876    236899999999999999999999998 4677776654

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.67  E-value=1.2e-07  Score=81.15  Aligned_cols=64  Identities=20%  Similarity=0.432  Sum_probs=55.9

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      .+.+.++++.|++..-+|+++..+++||++|++.+.+  .  ...+.|.+||+++||+|++|++.|.+
T Consensus        39 ~~~~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~--~~~~~l~~Gd~~~ip~~~~H~~~~~~  102 (115)
T 1yhf_A           39 DLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--D--QETYRVAEGQTIVMPAGIPHALYAVE  102 (115)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--T--TEEEEEETTCEEEECTTSCEEEEESS
T ss_pred             ceEEEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--C--CEEEEECCCCEEEECCCCCEEEEECC
Confidence            3456667779999988999999999999999999876  2  25789999999999999999999987

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.67  E-value=3.7e-07  Score=78.23  Aligned_cols=74  Identities=16%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..+.+.||+...+|||+ ..+++||++|++.+.+   ++                        +  ...|.+||++
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~---~~------------------------~--~~~l~~Gd~~   82 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHR-HSQVSYVVEGEFHVNV---DG------------------------V--IKVLTAGDSF   82 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCS-SEEEEEEEEECEEEEE---TT------------------------E--EEEECTTCEE
T ss_pred             ceEEEEEEECCCCcCCcEECC-cceEEEEEeeEEEEEE---CC------------------------E--EEEeCCCCEE
Confidence            478899999999999999996 8999999999999887   22                        2  2579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +||+|.+|.+.|.+  +..++.+...
T Consensus        83 ~ip~~~~H~~~~~~--~~~~l~v~~p  106 (116)
T 2pfw_A           83 FVPPHVDHGAVCPT--GGILIDTFSP  106 (116)
T ss_dssp             EECTTCCEEEEESS--CEEEEEEEES
T ss_pred             EECcCCceeeEeCC--CcEEEEEECC
Confidence            99999999999986  4666665543

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.66  E-value=8.5e-08  Score=90.18  Aligned_cols=75  Identities=8%  Similarity=0.105  Sum_probs=60.7

Q ss_pred             eeeEEEeeeCCCeeec--ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          200 NYRLAILEANPSTLVV--PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~l--Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .+.+.++++.|++...  +||++..+++||++|++.+.+    +-+++.|++||+++||+|++|++.|.++ +++ ++.+
T Consensus       103 ~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~----~~~~~~l~~GD~i~i~~~~~H~~~n~~~-~~~-~l~v  176 (192)
T 1y9q_A          103 GLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF----DEQWHELQQGEHIRFFSDQPHGYAAVTE-KAV-FQNI  176 (192)
T ss_dssp             TEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE----TTEEEEECTTCEEEEECSSSEEEEESSS-CEE-EEEE
T ss_pred             cEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE----CCEEEEeCCCCEEEEcCCCCeEeECCCC-CcE-EEEE
Confidence            3445556669998765  667788999999999999877    2468999999999999999999999984 677 6666


Q ss_pred             ecc
Q 039441          278 LQP  280 (539)
Q Consensus       278 ~d~  280 (539)
                      +.+
T Consensus       177 ~~~  179 (192)
T 1y9q_A          177 VAY  179 (192)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            654

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.66  E-value=1.1e-07  Score=86.43  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=63.3

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+.+.++++.|++...+|+++..+++||++|++.+.+   ++...+.|.+||+++||+|++|++.|.+ +.++.++.++.
T Consensus        47 ~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~~~~l~~Gd~i~ip~~~~H~~~n~~-~~~~~~l~v~~  122 (147)
T 2f4p_A           47 NTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKPARILKKGDVVEIPPNVVHWHGAAP-DEELVHIGIST  122 (147)
T ss_dssp             SCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSCCEEEETTCEEEECTTCCEEEEEBT-TBCEEEEEEEC
T ss_pred             cEEEEEEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEEEEEECCCCEEEECCCCcEEeEeCC-CCCEEEEEEEc
Confidence            3445556669999888999999999999999999876   2222489999999999999999999998 57788777776


Q ss_pred             c
Q 039441          280 P  280 (539)
Q Consensus       280 ~  280 (539)
                      +
T Consensus       123 ~  123 (147)
T 2f4p_A          123 Q  123 (147)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=98.64  E-value=9.9e-08  Score=83.10  Aligned_cols=72  Identities=18%  Similarity=0.225  Sum_probs=60.2

Q ss_pred             ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      .-++.+.++.|.||+...+|||+. .+++||++|++.+.+=   +                        +  +..|++||
T Consensus        33 ~~~~~v~~~~l~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i~---~------------------------~--~~~l~~Gd   82 (114)
T 3fjs_A           33 EHRLEVMRMVLPAGKQVGSHSVAG-PSTIQCLEGEVEIGVD---G------------------------A--QRRLHQGD   82 (114)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSS-CEEEEEEESCEEEEET---T------------------------E--EEEECTTE
T ss_pred             CCCEEEEEEEECCCCccCceeCCC-cEEEEEEECEEEEEEC---C------------------------E--EEEECCCC
Confidence            446899999999999999999965 6999999999998762   1                        1  36799999


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEE
Q 039441          435 VFIIPPGHPIALVASPNEKLLT  456 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~  456 (539)
                      +++||+|.+|.+.|.++..+.+
T Consensus        83 ~i~ip~~~~H~~~~~~~~~~~~  104 (114)
T 3fjs_A           83 LLYLGAGAAHDVNAITNTSLLV  104 (114)
T ss_dssp             EEEECTTCCEEEEESSSEEEEE
T ss_pred             EEEECCCCcEEEEeCCCcEEEE
Confidence            9999999999999986544433

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.62  E-value=1.2e-07  Score=83.84  Aligned_cols=76  Identities=13%  Similarity=0.146  Sum_probs=56.0

Q ss_pred             eEEEeeeCCCeeecccccCC-CcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          202 RLAILEANPSTLVVPHHSDA-ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       202 Rl~il~l~P~~l~lPh~~dA-~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      .++.+.+.|++...+|||+. .+++||++|++.+.+-  + ...+.|++||+++||+|++|++.|.++  .++++.++.+
T Consensus        44 ~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~--~-~~~~~l~~Gd~~~ip~g~~H~~~~~~~--~~~~l~~~~p  118 (134)
T 2o8q_A           44 HVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYE--D-IGAVMLEAGGSAFQPPGVRHRELRHSD--DLEVLEIVSP  118 (134)
T ss_dssp             EEEEECC-----CCCEEECCSCEEEEEEESEEEEEET--T-TEEEEEETTCEEECCTTCCEEEEEECT--TCEEEEEESS
T ss_pred             EEEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEEC--C-cEEEEecCCCEEEECCCCcEEeEeCCC--CeEEEEEECC
Confidence            34444445888888898886 9999999999998772  2 278999999999999999999999874  3577767765


Q ss_pred             CC
Q 039441          281 VN  282 (539)
Q Consensus       281 ~n  282 (539)
                      ..
T Consensus       119 ~~  120 (134)
T 2o8q_A          119 AG  120 (134)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>2l37_A Ribosome-inactivating protein luffin P1; hydrolase; NMR {Luffa aegyptiaca}

Probab=98.62  E-value=4e-08  Score=72.09  Aligned_cols=34  Identities=29%  Similarity=0.756  Sum_probs=30.9

Q ss_pred             CChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhCC
Q 039441           45 QDPEEEYKQCKQLCEKQ-------EAVQRRCERHYKEQQGG   78 (539)
Q Consensus        45 ~dp~~~~~~c~~~c~~q-------~~c~~~ce~~~~~~~~~   78 (539)
                      .||+++|++|+++|+.+       ++|+++|+++|++++++
T Consensus         1 ~dP~~el~~C~~~C~~q~q~~eq~q~C~qrCee~y~e~~~~   41 (43)
T 2l37_A            1 GSPRTEYEACRVRCQVAEHGVERQRRCQQVCEKRLREREGR   41 (43)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhcc
Confidence            49999999999999987       39999999999998854

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.61  E-value=4.9e-07  Score=76.35  Aligned_cols=75  Identities=17%  Similarity=0.289  Sum_probs=60.1

Q ss_pred             ccceeEEEEEEcCCceecceecCCCCEE-EEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCC
Q 039441          355 EIDAGVTYVEINQGGMMVPHYNSKATTI-VLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG  433 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PHwhpnA~ei-~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G  433 (539)
                      +-++.+..+.+.||+...+|||+...++ +||++|++.+.+-.  +                        +.  ..|.+|
T Consensus        30 ~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~--~------------------------~~--~~l~~G   81 (110)
T 2q30_A           30 SENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG--D------------------------AV--IPAPRG   81 (110)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG--G------------------------CE--EEECTT
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC--C------------------------EE--EEECCC
Confidence            3457888999999999999999766788 89999999886521  1                        12  579999


Q ss_pred             cEEEeCCCCeEEEEcCCCCcEEEEEE
Q 039441          434 VVFIIPPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~gne~l~~v~F  459 (539)
                      |+++||+|.+|.+.|.++  ..++.+
T Consensus        82 d~~~ip~~~~H~~~~~~~--~~~l~~  105 (110)
T 2q30_A           82 AVLVAPISTPHGVRAVTD--MKVLVT  105 (110)
T ss_dssp             EEEEEETTSCEEEEESSS--EEEEEE
T ss_pred             CEEEeCCCCcEEEEEcCC--cEEEEE
Confidence            999999999999999765  445543

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.61  E-value=3.7e-07  Score=78.10  Aligned_cols=76  Identities=18%  Similarity=0.349  Sum_probs=62.5

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      -++.+..+.+.||+...+|||+ ..+++||++|.+.+.+   ++                        +.  ..|.+||+
T Consensus        38 ~~~~~~~~~~~~g~~~~~H~H~-~~e~~~vl~G~~~~~~---~~------------------------~~--~~l~~Gd~   87 (115)
T 1yhf_A           38 QDLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQ------------------------ET--YRVAEGQT   87 (115)
T ss_dssp             TTEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TT------------------------EE--EEEETTCE
T ss_pred             CceEEEEEEECCCCccCCEECC-CcEEEEEEeCEEEEEE---CC------------------------EE--EEECCCCE
Confidence            3578899999999999999995 6899999999999875   21                        12  57999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ++||+|.+|.+.|.+  ++.++++.+.+
T Consensus        88 ~~ip~~~~H~~~~~~--~~~~~~v~~~~  113 (115)
T 1yhf_A           88 IVMPAGIPHALYAVE--AFQMLLVVVKP  113 (115)
T ss_dssp             EEECTTSCEEEEESS--CEEEEEEEECS
T ss_pred             EEECCCCCEEEEECC--CceEEEEEEcc
Confidence            999999999999986  46666655443

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.61  E-value=9.3e-08  Score=84.55  Aligned_cols=74  Identities=16%  Similarity=0.112  Sum_probs=54.3

Q ss_pred             EEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441          360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP  439 (539)
Q Consensus       360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP  439 (539)
                      +..+.+.||+...+|||+...+++||++|++.+.+-..                            -...|++||+++||
T Consensus        45 ~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~~----------------------------~~~~l~~Gd~~~ip   96 (134)
T 2o8q_A           45 VIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYEDI----------------------------GAVMLEAGGSAFQP   96 (134)
T ss_dssp             EEEECC-----CCCEEECCSCEEEEEEESEEEEEETTT----------------------------EEEEEETTCEEECC
T ss_pred             EEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEECCc----------------------------EEEEecCCCEEEEC
Confidence            44444558999999999778999999999999877331                            12579999999999


Q ss_pred             CCCeEEEEcCCCCcEEEEEEeec
Q 039441          440 PGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +|.+|.+.|.++ .+.++++...
T Consensus        97 ~g~~H~~~~~~~-~~~~l~~~~p  118 (134)
T 2o8q_A           97 PGVRHRELRHSD-DLEVLEIVSP  118 (134)
T ss_dssp             TTCCEEEEEECT-TCEEEEEESS
T ss_pred             CCCcEEeEeCCC-CeEEEEEECC
Confidence            999999999766 4677765544

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.60  E-value=1.8e-07  Score=78.97  Aligned_cols=75  Identities=16%  Similarity=0.314  Sum_probs=59.0

Q ss_pred             eeeEEEeeeCCCeeecccccCC-CcE-EEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          200 NYRLAILEANPSTLVVPHHSDA-ETI-LVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA-~~~-~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .+.+.++++.|++...+|+|+. .++ +||++|++.+.+   +....+.|.+||+++||+|++|++.|.++   ..++.+
T Consensus        32 ~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~---~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~---~~~l~~  105 (110)
T 2q30_A           32 NFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG---DGDAVIPAPRGAVLVAPISTPHGVRAVTD---MKVLVT  105 (110)
T ss_dssp             SCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC---GGGCEEEECTTEEEEEETTSCEEEEESSS---EEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe---CCCEEEEECCCCEEEeCCCCcEEEEEcCC---cEEEEE
Confidence            4556666779999888898875 687 899999998875   21357899999999999999999999874   445555


Q ss_pred             ecc
Q 039441          278 LQP  280 (539)
Q Consensus       278 ~d~  280 (539)
                      +.|
T Consensus       106 ~~p  108 (110)
T 2q30_A          106 IAP  108 (110)
T ss_dssp             EES
T ss_pred             ECC
Confidence            543

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.59  E-value=1.5e-06  Score=87.32  Aligned_cols=203  Identities=13%  Similarity=0.152  Sum_probs=117.0

Q ss_pred             ecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCcee----
Q 039441          214 VVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRV----  289 (539)
Q Consensus       214 ~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~~----  289 (539)
                      ..=||-+.++|+|+++|..+|-+++.|......|++||++.+|+|++|.=+-..+   . +++++.+.-.+|..+-    
T Consensus        44 ~d~H~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv~HsP~r~~e---t-~gLviE~~R~~~~~D~l~wy  119 (286)
T 2qnk_A           44 KDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFAN---T-VGLVVERRRLETELDGLRYY  119 (286)
T ss_dssp             CCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTCCEEEEECTT---C-EEEEEEECCCTTCCEEEEEE
T ss_pred             ccCcCCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCCCcCCcccCC---e-EEEEEeecCCCCCccceEEE
Confidence            4446788999999999999999999877788999999999999999999998653   2 3344544443343321    


Q ss_pred             ccccCccEEEcC------hhhh-------------hhcCcccccc---CC---CCCCCCcceecC----CCCCcccCCCc
Q 039441          290 QQRQQGTIKRAS------QEQL-------------KALSHHASSR---RR---HGRGSTAPFNLL----SRKPIYNNNFG  340 (539)
Q Consensus       290 ~~q~~G~Ivrv~------~eql-------------~~l~~~~~~~---~~---~~~~~~~~fnl~----~~~p~~sn~~G  340 (539)
                      -.+-..++..+.      ..||             +-=.|...+-   ++   .......||+|.    ...+.+.+ .|
T Consensus       120 c~~c~~~~~e~~f~~~dl~~ql~~~~~~f~~~~~~rtc~p~~~~~~~~~p~~~~~~~~~~pf~Lk~Wl~~h~~ei~s-~~  198 (286)
T 2qnk_A          120 VGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLLKEPPFPLSTRSIMEPMSLDAWLDSHHRELQA-GT  198 (286)
T ss_dssp             STTSSSEEEEEEECCSSHHHHHHHHHHHHHTSHHHHHSCCCGGGSCSSCSSCCCCCCCCCCEEHHHHHHHTHHHHHT-TC
T ss_pred             cCCCCCEEEEEEEEEechHHhhHHHHHHHhcCcccccCCCChhhcccCCCCCCccccccCCcCHHHHHHhhhHHHhc-CC
Confidence            111111221110      0111             1111111000   11   112344567763    23333322 11


Q ss_pred             eEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhh
Q 039441          341 RFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESS  420 (539)
Q Consensus       341 ~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~  420 (539)
                      .+ .+...+        .....+-+.+|.-...-  .....|+++++|+..|+|-.                        
T Consensus       199 ~~-sLFg~~--------~eteV~l~G~Ges~~~~--~~~d~wiWqLEGss~Vt~~~------------------------  243 (286)
T 2qnk_A          199 PL-SLFGDT--------YETQVIAYGQGSSEGLR--QNVDVWLWQLEGSSVVTMGG------------------------  243 (286)
T ss_dssp             CE-ESSCTT--------SSEEEEEECSEEEEECC--CSSCEEEEEEESCEEEEETT------------------------
T ss_pred             cc-ccccCC--------CceEEEEEcCCcccccc--CcCcEEEEEEcCceEEEECC------------------------
Confidence            21 111111        11122225566443332  34589999999999765532                        


Q ss_pred             cceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          421 RELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       421 ~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                           .++.|++||.+.||++..|.+....+  ..+|.+..++
T Consensus       244 -----q~~~L~~~DsLLIpa~~~y~~~r~~g--sv~L~I~~~p  279 (286)
T 2qnk_A          244 -----RRLSLAPDDSLLVLAGTSYAWERTQG--SVALSVTQDP  279 (286)
T ss_dssp             -----EEEEECTTEEEEECTTCCEEEEECTT--CEEEEEEECG
T ss_pred             -----eEEeccCCCEEEecCCCeEEEEecCC--eEEEEEEECc
Confidence                 23679999999999999999998644  5555544444

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.58  E-value=5.6e-07  Score=88.18  Aligned_cols=163  Identities=15%  Similarity=0.134  Sum_probs=110.8

Q ss_pred             eeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          201 YRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      ....++++.|++.+-+|.|...+.+||++|.-.    +.    ...+.+||.+++|+|+.|.....+  . +.++..+  
T Consensus        43 ~~~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~----d~----~~~~~~Gd~~~~P~g~~H~p~a~~--g-c~~~vk~--  109 (223)
T 3o14_A           43 RATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ----DE----HGDYPAGTYVRNPPTTSHVPGSAE--G-CTIFVKL--  109 (223)
T ss_dssp             EEEEEEEECTTEECCCEECTTCEEEEEEEEEEE----ET----TEEEETTEEEEECTTCEECCEESS--C-EEEEEEE--
T ss_pred             cEEEEEEECCCCCcccccCCCCEEEEEEEeEEE----EC----CeEECCCeEEEeCCCCccccEeCC--C-CEEEEEe--
Confidence            456788999999999999999999999999954    22    458999999999999999888732  2 4333322  


Q ss_pred             CCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCccc-CCCce-EEEeCCcccccccccce
Q 039441          281 VNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYN-NNFGR-FFEATPKDYQQLQEIDA  358 (539)
Q Consensus       281 ~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~s-n~~G~-i~~~~~~~fP~L~~l~i  358 (539)
                          ++|..+..+  .+ ..                             +...... ...|. +..+...       ..-
T Consensus       110 ----~~~~~~d~~--~v-~~-----------------------------~~~~W~~~~~~Gv~~~~L~~~-------~~E  146 (223)
T 3o14_A          110 ----WQFDPADRT--QF-SK-----------------------------NMEAELGAPVEGISTSLLHED-------ERE  146 (223)
T ss_dssp             ----SCSCTTCCB--CE-EE-----------------------------ETTTTCCCCBTTEEEEEEEEC-------SSC
T ss_pred             ----cCCCCCccc--cc-cc-----------------------------chhcccccCCCCeEEEEEecC-------CCc
Confidence                222221111  01 00                             0000000 01333 3333322       236


Q ss_pred             eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441          359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII  438 (539)
Q Consensus       359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV  438 (539)
                      .++++.+.||+.+.+|.| ...|| ||++|...    ..+                             ..+.+|+-+..
T Consensus       147 ~v~l~r~~~G~~~~~~~h-gG~Ei-lVL~G~~~----d~~-----------------------------~~~~~GsWlR~  191 (223)
T 3o14_A          147 TVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVT----VND-----------------------------EVLGRNAWLRL  191 (223)
T ss_dssp             EEEEEEECTTCEEEECCS-SCEEE-EEEEEEEE----ETT-----------------------------EEECTTEEEEE
T ss_pred             EEEEEEECCCCccCCCCC-CcEEE-EEEEeEEE----ECC-----------------------------ceECCCeEEEe
Confidence            778899999999999999 88997 99999963    221                             35899999999


Q ss_pred             CCCCeEEEEcCCCCcEE
Q 039441          439 PPGHPIALVASPNEKLL  455 (539)
Q Consensus       439 PaG~~h~i~n~gne~l~  455 (539)
                      |.|..|...++ .++..
T Consensus       192 P~gs~h~~~ag-~~g~~  207 (223)
T 3o14_A          192 PEGEALSATAG-ARGAK  207 (223)
T ss_dssp             CTTCCEEEEEE-EEEEE
T ss_pred             CCCCccCcEEC-CCCeE
Confidence            99999999884 34444

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=98.57  E-value=3.1e-07  Score=81.16  Aligned_cols=73  Identities=18%  Similarity=0.293  Sum_probs=59.5

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      ..+++.++.+.||+-.  |||....+++||++|++.+++   ++                        +.  ..|++||+
T Consensus        38 ~~~~~~~~~~~pG~~~--~~H~~~~E~~~Vl~G~~~~~~---~g------------------------~~--~~l~~GD~   86 (119)
T 3lwc_A           38 GPITIGYGRYAPGQSL--TETMAVDDVMIVLEGRLSVST---DG------------------------ET--VTAGPGEI   86 (119)
T ss_dssp             CCCEEEEEEECTTCEE--EEECSSEEEEEEEEEEEEEEE---TT------------------------EE--EEECTTCE
T ss_pred             CCEEEEEEEECCCCCc--CccCCCCEEEEEEeCEEEEEE---CC------------------------EE--EEECCCCE
Confidence            3589999999999854  677789999999999999988   23                        22  57999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      ++||+|.+|.+.|.+ +...+|.+.
T Consensus        87 v~ip~g~~H~~~~~~-~~~~~l~v~  110 (119)
T 3lwc_A           87 VYMPKGETVTIRSHE-EGALTAYVT  110 (119)
T ss_dssp             EEECTTCEEEEEEEE-EEEEEEEEE
T ss_pred             EEECCCCEEEEEcCC-CCeEEEEEE
Confidence            999999999998874 556665443

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.57  E-value=2.9e-07  Score=86.52  Aligned_cols=79  Identities=13%  Similarity=0.091  Sum_probs=64.2

Q ss_pred             cccceeEEEEEEcCCceec--ceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeC
Q 039441          354 QEIDAGVTYVEINQGGMMV--PHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLS  431 (539)
Q Consensus       354 ~~l~isva~v~L~pGgm~~--PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~  431 (539)
                      ....+.+..+++.||+...  +||| ...+++||++|++.+.+   ++                        +.  ..|+
T Consensus       100 ~~~~~~~~~~~~~pg~~~~~~~H~h-~~~E~~~Vl~G~~~~~~---~~------------------------~~--~~l~  149 (192)
T 1y9q_A          100 ADTGLEIFEITLLDHHQQMSSPHAL-GVIEYIHVLEGIMKVFF---DE------------------------QW--HELQ  149 (192)
T ss_dssp             TTTTEEEEEEEECTTCEEEECCCST-TCEEEEEEEESCEEEEE---TT------------------------EE--EEEC
T ss_pred             CCCcEEEEEEEECCCCCccCCCCCC-CCEEEEEEEEeEEEEEE---CC------------------------EE--EEeC
Confidence            3456889999999999987  4554 56899999999999876   22                        12  5799


Q ss_pred             CCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          432 PGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       432 ~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +||+++||+|.+|.+.|.+++++ ++.+...+
T Consensus       150 ~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~  180 (192)
T 1y9q_A          150 QGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYP  180 (192)
T ss_dssp             TTCEEEEECSSSEEEEESSSCEE-EEEEEECC
T ss_pred             CCCEEEEcCCCCeEeECCCCCcE-EEEEEecC
Confidence            99999999999999999988888 77765443

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.56  E-value=2.4e-07  Score=79.60  Aligned_cols=72  Identities=18%  Similarity=0.354  Sum_probs=59.6

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ++.+.++.+.|+.-..+|+++..+++||++|++.+.+    ...++.|++||+++||+|++|++.|.+   +++++.+.
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i----~~~~~~l~~Gd~i~i~~~~~H~~~~~~---~~~~~~i~  108 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITF----DDQKIDLVPEDVLMVPAHKIHAIAGKG---RFKMLQIT  108 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE----TTEEEEECTTCEEEECTTCCBEEEEEE---EEEEEEEE
T ss_pred             CceEEEEEECCCCccccEECCCCeEEEEEeCEEEEEE----CCEEEEecCCCEEEECCCCcEEEEeCC---CcEEEEEE
Confidence            3557777789998888899999999999999999877    235899999999999999999999974   45544443

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.56  E-value=1.9e-07  Score=91.76  Aligned_cols=77  Identities=12%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             eeeEEEeeeCC-CeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANP-STLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P-~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .+.+.++++.| ++...+|++...+++||++|++.+.+  .  ...+.|++||+++||+|++|++.|.+ +++++++.++
T Consensus       144 ~~~~~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i--~--~~~~~l~~Gd~i~ip~~~~H~~~n~~-~~~~~~l~v~  218 (243)
T 3h7j_A          144 WVEIMLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV--E--GCTVEMKFGTAYFCEPREDHGAINRS-EKESKSINIF  218 (243)
T ss_dssp             TEEEEEEEECTTTEEEEEECCSSEEEEEECSSCEEEEE--T--TEEEEECTTCEEEECTTCCEEEEECS-SSCEEEEEEE
T ss_pred             eeEEEEEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE--C--CEEEEECCCCEEEECCCCcEEeEeCC-CCCEEEEEEE
Confidence            35677888999 88888898999999999999999876  2  25788999999999999999999998 5788888888


Q ss_pred             ccC
Q 039441          279 QPV  281 (539)
Q Consensus       279 d~~  281 (539)
                      .|.
T Consensus       219 ~p~  221 (243)
T 3h7j_A          219 FPP  221 (243)
T ss_dssp             ESC
T ss_pred             cCC
Confidence            753

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.56  E-value=1.6e-07  Score=92.98  Aligned_cols=78  Identities=14%  Similarity=0.105  Sum_probs=61.0

Q ss_pred             eeeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEe---C--CCc-----------eeeecCCCcEEEeCCCCeEE
Q 039441          200 NYRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVS---H--ERR-----------ESFNMEHGDVISVPAGTTYY  262 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~---p--g~~-----------~~~~v~~GDV~~iPaG~~h~  262 (539)
                      .+.+..+++.|++...||||. +++|+||++|++.+.+-.   +  +..           .++.+++||+++||+|++|+
T Consensus        42 ~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~  121 (239)
T 2xlg_A           42 GFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHG  121 (239)
T ss_dssp             EEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEE
T ss_pred             CEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEE
Confidence            344555566999998999766 899999999999996611   0  111           28899999999999999999


Q ss_pred             EEecCCCceEEE-EEEe
Q 039441          263 LSNQDNVDRLHV-AKLL  278 (539)
Q Consensus       263 i~N~g~~e~L~i-v~l~  278 (539)
                      +.|.++ +++++ +.++
T Consensus       122 ~~N~~~-~~~~~~l~~~  137 (239)
T 2xlg_A          122 FVNPTD-KTLPIVFVWM  137 (239)
T ss_dssp             EECCSS-SCEEEEEEEE
T ss_pred             EEeCCC-CCEEEEEEEE
Confidence            999984 66777 5555

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.55  E-value=2.5e-07  Score=80.50  Aligned_cols=61  Identities=16%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             cccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          217 HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       217 h~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      +|++.++++||++|++.+.+  .+....+.|++||.++||||++|.+.|.+++..+++++++-
T Consensus        49 ~~~~~~E~~~Vl~G~~~l~~--~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~~  109 (112)
T 2opk_A           49 YDSPQDEWVMVVSGSAGIEC--EGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVHC  109 (112)
T ss_dssp             BCCSSEEEEEEEESCEEEEE--TTCSSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             ccCCccEEEEEEeCeEEEEE--CCEEEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEE
Confidence            67889999999999999987  22222389999999999999999999998654666666654

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.54  E-value=2.8e-07  Score=92.21  Aligned_cols=76  Identities=20%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             eeeEEEeeeCCCeeecc-cccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANPSTLVVP-HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lP-h~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .+.+.++++.|++..-+ |++...+++||++|++.+.+    +.+.+.|++||+++||+|++|++.|.++.++++++++.
T Consensus       181 ~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i----~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~~  256 (274)
T 1sef_A          181 DMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL----DNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSK  256 (274)
T ss_dssp             SEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEeCCCCCCEEEEEEE
Confidence            55677778899998876 88899999999999999987    23689999999999999999999999843778877765


Q ss_pred             c
Q 039441          279 Q  279 (539)
Q Consensus       279 d  279 (539)
                      +
T Consensus       257 ~  257 (274)
T 1sef_A          257 D  257 (274)
T ss_dssp             E
T ss_pred             c
Confidence            5

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.53  E-value=2.3e-07  Score=91.95  Aligned_cols=77  Identities=17%  Similarity=0.090  Sum_probs=61.7

Q ss_pred             eeeEEEeeeCCCeeeccccc-CCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANPSTLVVPHHS-DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~-dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .+.+.++++.|++-.-+||+ ...+++||++|++.+.+    ..+.+.|++||+++||+|++|++.|.++.++++++.+.
T Consensus       178 ~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i----~~~~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~~  253 (261)
T 1rc6_A          178 DMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL----DNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSK  253 (261)
T ss_dssp             SEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES----SSCEEEEETTCEEEECSSEEEEEEEC----CEEEEEEE
T ss_pred             ceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE----CCEEEEeCCCCEEEECCCCcEEeEeCCCCcCEEEEEEe
Confidence            34567777899998777865 67899999999999876    23689999999999999999999999843789888877


Q ss_pred             cc
Q 039441          279 QP  280 (539)
Q Consensus       279 d~  280 (539)
                      |.
T Consensus       254 d~  255 (261)
T 1rc6_A          254 DC  255 (261)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.51  E-value=6e-07  Score=90.99  Aligned_cols=78  Identities=15%  Similarity=0.234  Sum_probs=66.4

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      ..+.+..+.+.||+...+|||+++.+++||++|++.+.+   ++                        +.  ..|++||+
T Consensus        44 ~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~---~~------------------------~~--~~l~~Gd~   94 (337)
T 1y3t_A           44 DLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DG------------------------ER--YLLISGDY   94 (337)
T ss_dssp             SSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TT------------------------EE--EEECTTCE
T ss_pred             CeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE---CC------------------------EE--EEECCCCE
Confidence            368899999999999999999779999999999999986   22                        22  57999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ++||+|.+|.+.|.++ ++.++.+.+.+
T Consensus        95 ~~~p~~~~H~~~n~~~-~~~~~~~~~p~  121 (337)
T 1y3t_A           95 ANIPAGTPHSYRMQSH-RTRLVSYTMKG  121 (337)
T ss_dssp             EEECTTCCEEEEECST-TEEEEEEEETT
T ss_pred             EEECCCCcEEEEECCC-CeEEEEEECCC
Confidence            9999999999999876 58787765544

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.51  E-value=2.5e-07  Score=86.95  Aligned_cols=105  Identities=14%  Similarity=0.173  Sum_probs=66.7

Q ss_pred             CCceeecCc--cceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCC-Ceeeccc-ccCCCcEEEEEeceEEEEEE
Q 039441          162 NPYYFHSQR--FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANP-STLVVPH-HSDAETILVLLKGKGVITLV  237 (539)
Q Consensus       162 ~py~f~~~~--f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P-~~l~lPh-~~dA~~~~yV~~G~g~i~~v  237 (539)
                      .+++|....  ......++.+.+++...|++..      ..+-..+|+|.| ++-.-|+ ++++.+++||++|+..|++ 
T Consensus        53 ~~ia~~~~~~~t~~v~~~~~~~~~fa~~fs~~~------~~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl-  125 (166)
T 2vpv_A           53 EIIAFAPNLSQTEQVKDTKDENFALEIMFDKHK------EYFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV-  125 (166)
T ss_dssp             --------------------CBCCCCEECCTTT------CSCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE-
T ss_pred             eeEEECCCCCceEecCCCCCCCEEEEEeecCCc------ccceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE-
Confidence            456665432  2333334446665555555432      133455677899 7655554 6889999999999999998 


Q ss_pred             eCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          238 SHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       238 ~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                         ...++.|.+||.++||+|.+|.|.|.++ ..++++.+
T Consensus       126 ---~g~~~~L~~Gds~~iP~g~~H~~~N~~d-~~Arll~V  161 (166)
T 2vpv_A          126 ---CKNKFLSVKGSTFQIPAFNEYAIANRGN-DEAKMFFV  161 (166)
T ss_dssp             ---TTEEEEEETTCEEEECTTCEEEEEECSS-SCEEEEEE
T ss_pred             ---CCEEEEEcCCCEEEECCCCCEEEEECCC-CCEEEEEE
Confidence               3478999999999999999999999984 66666654

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.49  E-value=4.6e-07  Score=83.89  Aligned_cols=76  Identities=14%  Similarity=0.221  Sum_probs=61.2

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+...+++++  +-..|+|++.++++||++|++.|++  .|  +++.|++||+|+||+|+.|.+.|.   +.++++++..
T Consensus        65 ~~s~g~~~~e--~~~~~~~~~~eE~~yVLeG~~~l~i--~g--~~~~l~~GD~i~iP~G~~h~~~n~---~~a~~l~V~~  135 (151)
T 4axo_A           65 RLGCGMMEMK--ETTFDWTLNYDEIDYVIDGTLDIII--DG--RKVSASSGELIFIPKGSKIQFSVP---DYARFIYVTY  135 (151)
T ss_dssp             SCEEEEEEEE--EEEEEEECSSEEEEEEEEEEEEEEE--TT--EEEEEETTCEEEECTTCEEEEEEE---EEEEEEEEEE
T ss_pred             cEEEEEEEEc--CccccEeCCCcEEEEEEEeEEEEEE--CC--EEEEEcCCCEEEECCCCEEEEEeC---CCEEEEEEEC
Confidence            4556666666  3345677899999999999999996  22  689999999999999999999997   4688888888


Q ss_pred             cCCCC
Q 039441          280 PVNTP  284 (539)
Q Consensus       280 ~~n~p  284 (539)
                      |.+.+
T Consensus       136 P~~~~  140 (151)
T 4axo_A          136 PADWA  140 (151)
T ss_dssp             CSCC-
T ss_pred             CCCcc
Confidence            76654

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.48  E-value=2.4e-07  Score=87.48  Aligned_cols=79  Identities=16%  Similarity=0.210  Sum_probs=66.2

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ....+.++++.|++-..+|++...+++||++|+..+.+=   ..+++.|++||++ ||+|++|++.|.+ +++++++.++
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld---~ge~~~L~~GDsi-~~~g~~H~~~N~g-~~~ar~l~V~  151 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELD---DGAKRTVRQGGII-VQRGTNHLWRNTT-DKPCRIAFIL  151 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECG---GGCEEEECTTCEE-EECSCCBEEECCS-SSCEEEEEEE
T ss_pred             CCeEEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEEC---CCeEEEECCCCEE-EeCCCcEEEEeCC-CCCEEEEEEE
Confidence            345566677799999999988989999999999998752   1357899999999 9999999999998 5789998888


Q ss_pred             ccCC
Q 039441          279 QPVN  282 (539)
Q Consensus       279 d~~n  282 (539)
                      .+..
T Consensus       152 ~P~~  155 (172)
T 3es1_A          152 IEAP  155 (172)
T ss_dssp             EECC
T ss_pred             cCCC
Confidence            7543

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.48  E-value=5.7e-07  Score=95.04  Aligned_cols=78  Identities=12%  Similarity=0.051  Sum_probs=68.0

Q ss_pred             ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      .-.|.+..+.|.||....+|.|.. .++.||++|+|.++.++.                          ++  ..+++||
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~-~ev~~IleG~G~~t~v~G--------------------------~~--~~~~~GD  170 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAA-SALRFIMEGSGAYTIVDG--------------------------HK--VELGAND  170 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESS-CEEEEEEECSCEEEEETT--------------------------EE--EEECTTC
T ss_pred             CCeeEEEEEEECCCCCcCCccCCc-ceEEEEEEeeEEEEEECC--------------------------EE--EEEcCCC
Confidence            346889999999999999999955 599999999998877754                          23  4799999


Q ss_pred             EEEeCCCCeEEEEc-CCCCcEEEEEEee
Q 039441          435 VFIIPPGHPIALVA-SPNEKLLTVGFSL  461 (539)
Q Consensus       435 V~vVPaG~~h~i~n-~gne~l~~v~F~~  461 (539)
                      +|++|.|..|.+.| .++++|.||++.+
T Consensus       171 ~i~~P~g~~H~~~N~~gde~l~~l~v~d  198 (394)
T 3bu7_A          171 FVLTPNGTWHEHGILESGTECIWQDGLD  198 (394)
T ss_dssp             EEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred             EEEECcCCCEEEEcCCCCCCEEEEEccc
Confidence            99999999999999 9999999998553

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.45  E-value=1.6e-06  Score=80.78  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=69.9

Q ss_pred             ceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEe--ceEEEEEecCCCCcc
Q 039441          325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVE--GRGRFEMGGPLSSRW  402 (539)
Q Consensus       325 ~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~--G~g~v~vV~p~gs~~  402 (539)
                      ..+|.+- |.....+|....+-...    ..+.+++..+.+  ++-..+|||+...|+.||++  |+|.+.+   ++   
T Consensus        19 iv~~~ei-~~~~~~~G~srR~l~~~----~~fp~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~i---dg---   85 (157)
T 4h7l_A           19 MISLSEI-EAVACPCGWAQRAFGHD----AGTSVSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIEL---NG---   85 (157)
T ss_dssp             EEETTTS-CCEEETTEEEEEESCGG----GCCSCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEE---TT---
T ss_pred             EEEhhhC-CCccCCCCeeeEEeEcC----CCCcEEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEE---CC---
Confidence            3444433 33455688865544321    122345555555  45568999988999999999  9999987   22   


Q ss_pred             chhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          403 SQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       403 s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                                           +.  ..|++||+++||+|..|.+.+    ++.+|++.+-+
T Consensus        86 ---------------------e~--~~l~~GD~v~IPpg~~H~i~g----~l~~L~I~~Pp  119 (157)
T 4h7l_A           86 ---------------------QS--YPLTKLLAISIPPLVRHRIVG----EATIINIVSPP  119 (157)
T ss_dssp             ---------------------EE--EECCTTEEEEECTTCCEEEES----CEEEEEEEESS
T ss_pred             ---------------------EE--EEeCCCCEEEECCCCeEeeEC----CEEEEEEECCC
Confidence                                 22  579999999999999999973    59999987665

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.45  E-value=4.4e-07  Score=81.81  Aligned_cols=73  Identities=16%  Similarity=0.294  Sum_probs=59.3

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+...++++.|+.  .++|++.++++||++|++.|++   + -+++.|++||+++||+|++|.+.|.   ++++++.++.
T Consensus        56 ~~~~~~~~~~pG~--~~~h~~~~E~~~VLeG~~~l~~---~-g~~~~l~~GD~i~~p~g~~h~~~~~---~~~~~l~v~~  126 (133)
T 2pyt_A           56 SMAAGFMQWDNAF--FPWTLNYDEIDMVLEGELHVRH---E-GETMIAKAGDVMFIPKGSSIEFGTP---TSVRFLYVAW  126 (133)
T ss_dssp             SSEEEEEEEEEEE--EEEECSSEEEEEEEEEEEEEEE---T-TEEEEEETTCEEEECTTCEEEEEEE---EEEEEEEEEE
T ss_pred             cEEEEEEEECCCC--ccccCCCCEEEEEEECEEEEEE---C-CEEEEECCCcEEEECCCCEEEEEeC---CCEEEEEEEc
Confidence            4567777889993  4556689999999999999987   2 4678999999999999999999985   4677777775


Q ss_pred             cC
Q 039441          280 PV  281 (539)
Q Consensus       280 ~~  281 (539)
                      +.
T Consensus       127 p~  128 (133)
T 2pyt_A          127 PA  128 (133)
T ss_dssp             ST
T ss_pred             CC
Confidence            43

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.44  E-value=6.4e-07  Score=93.86  Aligned_cols=77  Identities=13%  Similarity=0.094  Sum_probs=66.8

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      -.|.+.+..|.||+...+|-|. ..+|.||++|+|...+|+.                          ++  ..+++||+
T Consensus       101 ~~L~a~~~~l~PG~~~~~HrH~-~~ev~~VleG~G~~~~vdG--------------------------~~--~~~~~GD~  151 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVVNG--------------------------DP--VRMSRGDL  151 (368)
T ss_dssp             SSCEEEEEEECTTCEEEEEEES-SCEEEECSSCEEEEEEETT--------------------------EE--EEEETTCE
T ss_pred             CceEEEEEEECCCCccCceecc-cceEEEEEecceEEEEECC--------------------------EE--EEEeCCCE
Confidence            4689999999999999999995 5699999999996455543                          23  57999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      |+||+|..|.+.|++++++.|+++.+
T Consensus       152 v~iP~g~~H~~~N~gde~l~~l~v~D  177 (368)
T 3nw4_A          152 LLTPGWCFHGHMNDTDQPMAWIDGLD  177 (368)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred             EEECCCCcEEeEeCCCCCeEEEEecc
Confidence            99999999999999999999998654

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.41  E-value=1.8e-06  Score=82.74  Aligned_cols=81  Identities=14%  Similarity=0.253  Sum_probs=65.2

Q ss_pred             eeEEEEEEcCCc----------eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEE
Q 039441          358 AGVTYVEINQGG----------MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKIS  427 (539)
Q Consensus       358 isva~v~L~pGg----------m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~  427 (539)
                      .++..+.+.|+.          .+.+|+|+. .+|.||++|+|.+.|-..++                        +.++
T Consensus        74 ~~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~-~Ei~yVleG~G~f~i~d~~d------------------------~~~~  128 (191)
T 1vr3_A           74 SWMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKED------------------------KWIR  128 (191)
T ss_dssp             CEEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTS------------------------CEEE
T ss_pred             CceeEEEECCCcCcchhhhhccCCcceECCc-ceEEEEEeceEEEEECCCCC------------------------eEEE
Confidence            356777787776          347899976 89999999999999987533                        2455


Q ss_pred             eeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          428 ANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       428 ~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ..|++||+++||+|.+|+..++.+..+..|-|+...
T Consensus       129 i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~  164 (191)
T 1vr3_A          129 ISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE  164 (191)
T ss_dssp             EEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred             EEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence            689999999999999999999877678888777654

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.40  E-value=1.2e-06  Score=88.11  Aligned_cols=76  Identities=16%  Similarity=0.259  Sum_probs=65.5

Q ss_pred             ceeeEEEeeeCCCeeecc-cccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLVVP-HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lP-h~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .+|-+.+++++|++..-. |+|.....+||++|+|++.+    +...+.|++||++++|++.+||++|.| +++|++|+.
T Consensus       184 ~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l----~~~~~~V~~GD~i~~~~~~~h~~~n~G-~e~~~yl~y  258 (266)
T 4e2q_A          184 YDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL----GDNWYPVQAGDVIWMAPFVPQWYAALG-KTRSRYLLY  258 (266)
T ss_dssp             CSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEES-SSCEEEEEE
T ss_pred             cceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEE----CCEEEEecCCCEEEECCCCcEEEEeCC-CCCEEEEEE
Confidence            467778889999999864 67888899999999999986    336899999999999999999999999 589987765


Q ss_pred             ec
Q 039441          278 LQ  279 (539)
Q Consensus       278 ~d  279 (539)
                      =|
T Consensus       259 kd  260 (266)
T 4e2q_A          259 KD  260 (266)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.37  E-value=1.5e-06  Score=81.55  Aligned_cols=73  Identities=12%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             eeEEEEEEcC-CceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          358 AGVTYVEINQ-GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       358 isva~v~L~p-Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +.+..+.|.| |+...|+.+..+.+++||++|++.++|-.                           +  ++.|.+||.+
T Consensus        88 ~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g---------------------------~--~~~L~~Gds~  138 (166)
T 2vpv_A           88 FASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCK---------------------------N--KFLSVKGSTF  138 (166)
T ss_dssp             CEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETT---------------------------E--EEEEETTCEE
T ss_pred             ceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECC---------------------------E--EEEEcCCCEE
Confidence            6777899999 88889988889999999999999998822                           1  2579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEE
Q 039441          437 IIPPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F  459 (539)
                      +||+|.+|.+.|.++.++.++..
T Consensus       139 ~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A          139 QIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             EECTTCEEEEEECSSSCEEEEEE
T ss_pred             EECCCCCEEEEECCCCCEEEEEE
Confidence            99999999999999988777653

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.37  E-value=1.1e-06  Score=85.52  Aligned_cols=64  Identities=17%  Similarity=0.366  Sum_probs=57.1

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe-cC
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN-QD  267 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N-~g  267 (539)
                      .+.+.++++.|++..-+|++..++++||++|++.+.+    +...+.|++||.++||+|++|++.| .+
T Consensus       152 ~~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i----~g~~~~l~~Gd~i~ip~~~~H~~~~~~~  216 (227)
T 3rns_A          152 NLVMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV----DGKPFIVKKGESAVLPANIPHAVEAETE  216 (227)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE----TTEEEEEETTEEEEECTTSCEEEECCSS
T ss_pred             CeEEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE----CCEEEEECCCCEEEECCCCcEEEEeCCC
Confidence            4677888889999999999999999999999999986    2358999999999999999999999 64

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.36  E-value=1.5e-06  Score=74.47  Aligned_cols=72  Identities=14%  Similarity=0.267  Sum_probs=58.7

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..+.+.||.-..+||| ...+++||++|++.+.+   ++                        +  ...|++||++
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h-~~~e~~~vl~G~~~~~i---~~------------------------~--~~~l~~Gd~i   86 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEY-FGDTLYLILQGEAVITF---DD------------------------Q--KIDLVPEDVL   86 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCC-SSCEEEEEEEEEEEEEE---TT------------------------E--EEEECTTCEE
T ss_pred             CceEEEEEECCCCccccEEC-CCCeEEEEEeCEEEEEE---CC------------------------E--EEEecCCCEE
Confidence            46677888999999999999 57899999999999876   21                        1  2579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      +||+|.+|.+.|.  +++.++.+.
T Consensus        87 ~i~~~~~H~~~~~--~~~~~~~i~  108 (114)
T 2ozj_A           87 MVPAHKIHAIAGK--GRFKMLQIT  108 (114)
T ss_dssp             EECTTCCBEEEEE--EEEEEEEEE
T ss_pred             EECCCCcEEEEeC--CCcEEEEEE
Confidence            9999999999996  356666544

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.35  E-value=1.2e-06  Score=73.00  Aligned_cols=68  Identities=19%  Similarity=0.330  Sum_probs=51.4

Q ss_pred             eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441          359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII  438 (539)
Q Consensus       359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV  438 (539)
                      .+....+.  +...+|||+.+.+++||++|++.+.+-..                           .  ..|.+||+++|
T Consensus        32 ~~~~~~~~--~~~~~H~H~~~~e~~~v~~G~~~~~~~~~---------------------------~--~~l~~Gd~~~i   80 (102)
T 3d82_A           32 QFKLVKVE--GEFVWHEHADTDEVFIVMEGTLQIAFRDQ---------------------------N--ITLQAGEMYVI   80 (102)
T ss_dssp             EEEEEEEE--EECCCBCCTTCCEEEEEEESEEEEECSSC---------------------------E--EEEETTEEEEE
T ss_pred             EEEEEEEC--CCCCceeCCCCcEEEEEEeCEEEEEECCE---------------------------E--EEEcCCCEEEE
Confidence            33344443  45789999877999999999998865221                           2  46999999999


Q ss_pred             CCCCeEEEEcCCCCcEEEEEE
Q 039441          439 PPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       439 PaG~~h~i~n~gne~l~~v~F  459 (539)
                      |+|.+|.+.|.+  +..++.+
T Consensus        81 p~~~~H~~~~~~--~~~~l~i   99 (102)
T 3d82_A           81 PKGVEHKPMAKE--ECKIMII   99 (102)
T ss_dssp             CTTCCBEEEEEE--EEEEEEE
T ss_pred             CCCCeEeeEcCC--CCEEEEE
Confidence            999999999973  4555554

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.34  E-value=8.3e-07  Score=75.45  Aligned_cols=70  Identities=11%  Similarity=0.086  Sum_probs=53.2

Q ss_pred             EEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441          360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP  439 (539)
Q Consensus       360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP  439 (539)
                      ...+.+.||.. .+|||+...++.||++|++.+.+-.. .                         .  ..|++||+++||
T Consensus        30 ~~~~~~~~g~~-~~H~H~~~~E~~~Vl~G~~~~~~~~~-~-------------------------~--~~l~~Gd~~~ip   80 (107)
T 2i45_A           30 QFHLVKLLGDY-GWHTHGYSDKVLFAVEGDMAVDFADG-G-------------------------S--MTIREGEMAVVP   80 (107)
T ss_dssp             EEEEEEEEEEC-CCBCC--CCEEEEESSSCEEEEETTS-C-------------------------E--EEECTTEEEEEC
T ss_pred             EEEEEECCCCC-cceeCCCCCEEEEEEeCEEEEEECCC-c-------------------------E--EEECCCCEEEEC
Confidence            34466778874 59999777999999999999876431 1                         2  579999999999


Q ss_pred             CCCeEEEEcCCCCcEEEEEEe
Q 039441          440 PGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~F~  460 (539)
                      +|.+|.+.|.  +++.++.|.
T Consensus        81 ~~~~H~~~~~--~~~~~l~i~   99 (107)
T 2i45_A           81 KSVSHRPRSE--NGCSLVLIE   99 (107)
T ss_dssp             TTCCEEEEEE--EEEEEEEEE
T ss_pred             CCCcEeeEeC--CCeEEEEEE
Confidence            9999999995  356666654

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.32  E-value=2e-06  Score=89.24  Aligned_cols=81  Identities=11%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             ceeEEEEEEcCCceec---ceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCC
Q 039441          357 DAGVTYVEINQGGMMV---PHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG  433 (539)
Q Consensus       357 ~isva~v~L~pGgm~~---PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G  433 (539)
                      .+.+. ..+.|++...   ||||++..|++||++|++.+.+-..++.                        .....|++|
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~------------------------~~~~~L~~G  101 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNET------------------------QQTRVLSSG  101 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSC------------------------CEEEEEETT
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCc------------------------eEEEEECCC
Confidence            35666 5666766655   8999889999999999999988774431                        234689999


Q ss_pred             cEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          434 VVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      |+++||+|.+|.+.|.+++. .+|.+.+.+
T Consensus       102 D~v~ip~g~~H~~~n~~~~~-~~l~v~~p~  130 (350)
T 1juh_A          102 DYGSVPRNVTHTFQIQDPDT-EMTGVIVPG  130 (350)
T ss_dssp             CEEEECTTEEEEEEECSTTE-EEEEEEESS
T ss_pred             CEEEECCCCcEEEEeCCCCC-EEEEEEcCc
Confidence            99999999999999987765 776655444

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.32  E-value=1.5e-06  Score=87.49  Aligned_cols=78  Identities=18%  Similarity=0.179  Sum_probs=67.7

Q ss_pred             ceeeEEEeeeCCCeeecc-cccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLVVP-HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lP-h~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .++.+.+++++|++-.-. |++.-.+.+||++|+|++.+    +...+.|++||++++++|.+|+++|.| +++|++|++
T Consensus       189 ~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~----~~~~~~v~~GD~~~~~~~~~h~~~n~g-~~~~~yl~~  263 (278)
T 1sq4_A          189 HDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL----NQDWVEVEAGDFMWLRAFCPQACYSGG-PGRFRYLLY  263 (278)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE----TTEEEEEETTCEEEEEESCCEEEECCS-SSCEEEEEE
T ss_pred             CCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCCEEEEcCC-CCCEEEEEE
Confidence            478888999999997764 56777789999999999886    346899999999999999999999999 589999998


Q ss_pred             eccC
Q 039441          278 LQPV  281 (539)
Q Consensus       278 ~d~~  281 (539)
                      .|..
T Consensus       264 ~d~n  267 (278)
T 1sq4_A          264 KDVN  267 (278)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            8854

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.31  E-value=7.2e-06  Score=71.16  Aligned_cols=80  Identities=16%  Similarity=0.230  Sum_probs=58.2

Q ss_pred             cccceeEEEEEEcCCceecce--ecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeC
Q 039441          354 QEIDAGVTYVEINQGGMMVPH--YNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLS  431 (539)
Q Consensus       354 ~~l~isva~v~L~pGgm~~PH--whpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~  431 (539)
                      .+-++.+.++. .+|....++  +|....++.||++|++.+.+=..                           .....|+
T Consensus        27 ~~~~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~~---------------------------~~~~~l~   78 (112)
T 2opk_A           27 ERKGLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGD---------------------------TAPRVMR   78 (112)
T ss_dssp             EETTEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEETTC---------------------------SSCEEEC
T ss_pred             cCCCEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEECCE---------------------------EEEEEEC
Confidence            34456666664 445555552  55578999999999999977332                           1014699


Q ss_pred             CCcEEEeCCCCeEEEEcCCCC-cEEEEEEee
Q 039441          432 PGVVFIIPPGHPIALVASPNE-KLLTVGFSL  461 (539)
Q Consensus       432 ~GDV~vVPaG~~h~i~n~gne-~l~~v~F~~  461 (539)
                      +||.++||+|.+|.+.|.+++ ...||++..
T Consensus        79 ~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~~  109 (112)
T 2opk_A           79 PGDWLHVPAHCRHRVAWTDGGEPTVWLAVHC  109 (112)
T ss_dssp             TTEEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             CCCEEEECCCCcEEEEeCCCCCCEEEEEEEE
Confidence            999999999999999998765 577777653

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.31  E-value=1.3e-06  Score=82.53  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=65.7

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+.+++|.||+-..+|.| ...+++||++|++.+.+-..                          +.  ..|++||++
T Consensus        78 G~~~~~v~l~PG~~~~~H~H-~~eE~~~VLeGel~l~ld~g--------------------------e~--~~L~~GDsi  128 (172)
T 3es1_A           78 GSVIRVVDMLPGKESPMHRT-NSIDYGIVLEGEIELELDDG--------------------------AK--RTVRQGGII  128 (172)
T ss_dssp             SEEEEEEEECTTCBCCCBCC-SEEEEEEEEESCEEEECGGG--------------------------CE--EEECTTCEE
T ss_pred             CeEEEEEEECCCCCCCCeec-CceEEEEEEeCEEEEEECCC--------------------------eE--EEECCCCEE
Confidence            67888999999999999998 56789999999999875321                          12  469999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                       ||+|.+|.+.|.+++++.++++.+.+
T Consensus       129 -~~~g~~H~~~N~g~~~ar~l~V~~P~  154 (172)
T 3es1_A          129 -VQRGTNHLWRNTTDKPCRIAFILIEA  154 (172)
T ss_dssp             -EECSCCBEEECCSSSCEEEEEEEEEC
T ss_pred             -EeCCCcEEEEeCCCCCEEEEEEEcCC
Confidence             99999999999999999999877665

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.31  E-value=1.3e-06  Score=81.31  Aligned_cols=67  Identities=18%  Similarity=0.272  Sum_probs=54.9

Q ss_pred             CCCeeecccccC-CCcEEEEEe--ceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCC
Q 039441          209 NPSTLVVPHHSD-AETILVLLK--GKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTP  284 (539)
Q Consensus       209 ~P~~l~lPh~~d-A~~~~yV~~--G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~p  284 (539)
                      .+++...+|||. ..+++||++  |+|.+.+    .-+.+.|++||+++||+|+.|++.+     +|+++.++.|...+
T Consensus        53 ~~g~~~~~H~H~~~~E~~yVLe~~G~g~v~i----dge~~~l~~GD~v~IPpg~~H~i~g-----~l~~L~I~~Pp~~~  122 (157)
T 4h7l_A           53 QITKAARTHYHREHQEIYVVLDHAAHATIEL----NGQSYPLTKLLAISIPPLVRHRIVG-----EATIINIVSPPFDP  122 (157)
T ss_dssp             EECSCCCCBBCSSCEEEEEEEEECTTCEEEE----TTEEEECCTTEEEEECTTCCEEEES-----CEEEEEEEESSCCT
T ss_pred             eCCCCccceECCCCcEEEEEEecCcEEEEEE----CCEEEEeCCCCEEEECCCCeEeeEC-----CEEEEEEECCCCCC
Confidence            445556788774 679999999  9999987    2368999999999999999999984     48999988876543

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.29  E-value=1.1e-06  Score=74.78  Aligned_cols=64  Identities=13%  Similarity=0.200  Sum_probs=49.4

Q ss_pred             eeeCCCeeecccccCC-CcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          206 LEANPSTLVVPHHSDA-ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       206 l~l~P~~l~lPh~~dA-~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      +.+.|+.+. +|||+. .+++||++|++.+.+=  + ..++.|++||+++||+|++|++.|.+   +++++.
T Consensus        33 ~~~~~g~~~-~H~H~~~~E~~~Vl~G~~~~~~~--~-~~~~~l~~Gd~~~ip~~~~H~~~~~~---~~~~l~   97 (107)
T 2i45_A           33 LVKLLGDYG-WHTHGYSDKVLFAVEGDMAVDFA--D-GGSMTIREGEMAVVPKSVSHRPRSEN---GCSLVL   97 (107)
T ss_dssp             EEEEEEECC-CBCC--CCEEEEESSSCEEEEET--T-SCEEEECTTEEEEECTTCCEEEEEEE---EEEEEE
T ss_pred             EEECCCCCc-ceeCCCCCEEEEEEeCEEEEEEC--C-CcEEEECCCCEEEECCCCcEeeEeCC---CeEEEE
Confidence            344787754 888876 9999999999998762  2 25799999999999999999999953   455443

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.28  E-value=1.3e-06  Score=75.26  Aligned_cols=59  Identities=24%  Similarity=0.341  Sum_probs=49.3

Q ss_pred             EeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          205 ILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       205 il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      +.++.|+.+.  .+++..+++||++|++.+.+   +...++.|++||+++||+|++|.+.|.++
T Consensus        35 ~~~~~pg~~~--~hH~~~E~~~Vl~G~~~~~i---~~g~~~~l~~GD~i~ip~g~~H~~~n~~~   93 (101)
T 1o5u_A           35 IWEKEVSEFD--WYYDTNETCYILEGKVEVTT---EDGKKYVIEKGDLVTFPKGLRCRWKVLEP   93 (101)
T ss_dssp             EEEECSEEEE--EECSSCEEEEEEEEEEEEEE---TTCCEEEEETTCEEEECTTCEEEEEEEEE
T ss_pred             EEEeCCCccc--ccCCceEEEEEEeCEEEEEE---CCCCEEEECCCCEEEECCCCcEEEEeCCC
Confidence            5566898764  34789999999999999987   22367999999999999999999999863

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.28  E-value=2.7e-06  Score=76.68  Aligned_cols=71  Identities=14%  Similarity=0.211  Sum_probs=58.2

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+.+..+.+.||   ..|||....|++||++|++.+++=   +                        +.  ..|++||++
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~~---g------------------------~~--~~l~~GD~i  103 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRHE---G------------------------ET--MIAKAGDVM  103 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEET---T------------------------EE--EEEETTCEE
T ss_pred             cEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEEC---C------------------------EE--EEECCCcEE
Confidence            588999999999   457887899999999999999872   2                        23  479999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      +||+|.+|.+.|.  +++.++.+..
T Consensus       104 ~~p~g~~h~~~~~--~~~~~l~v~~  126 (133)
T 2pyt_A          104 FIPKGSSIEFGTP--TSVRFLYVAW  126 (133)
T ss_dssp             EECTTCEEEEEEE--EEEEEEEEEE
T ss_pred             EECCCCEEEEEeC--CCEEEEEEEc
Confidence            9999999999874  4677776543

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.27  E-value=3.9e-06  Score=82.71  Aligned_cols=76  Identities=14%  Similarity=0.208  Sum_probs=63.8

Q ss_pred             ceeeEEEeeeCCCeeecc-cccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLVVP-HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lP-h~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .++-+.+++++|++-.-. +++...+.+||++|++.+++    +...+.|++||.+++++|.+|+++|.+ +++++++.+
T Consensus       163 ~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~----~~~~~~l~~GD~~~~~~~~pH~~~n~g-~~~~~yl~~  237 (246)
T 1sfn_A          163 FDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL----EENYYPVTAGDIIWMGAHCPQWYGALG-RNWSKYLLY  237 (246)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEES-SSCEEEEEE
T ss_pred             CCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE----CCEEEEcCCCCEEEECCCCCEEEEcCC-CCCEEEEEE
Confidence            356677888899987654 56778899999999999987    346789999999999999999999998 588877665


Q ss_pred             ec
Q 039441          278 LQ  279 (539)
Q Consensus       278 ~d  279 (539)
                      =|
T Consensus       238 kd  239 (246)
T 1sfn_A          238 KD  239 (246)
T ss_dssp             EE
T ss_pred             Ee
Confidence            55

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.26  E-value=2.3e-06  Score=71.15  Aligned_cols=62  Identities=13%  Similarity=0.416  Sum_probs=49.4

Q ss_pred             eeeEEEeeeCCCeeecccccCC-CcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          200 NYRLAILEANPSTLVVPHHSDA-ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA-~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      .+.+.+..+.  +...+||++. .+++||++|++.+.+  .+  ..+.|.+||+++||+|++|++.|.+
T Consensus        30 ~~~~~~~~~~--~~~~~H~H~~~~e~~~v~~G~~~~~~--~~--~~~~l~~Gd~~~ip~~~~H~~~~~~   92 (102)
T 3d82_A           30 DYQFKLVKVE--GEFVWHEHADTDEVFIVMEGTLQIAF--RD--QNITLQAGEMYVIPKGVEHKPMAKE   92 (102)
T ss_dssp             TEEEEEEEEE--EECCCBCCTTCCEEEEEEESEEEEEC--SS--CEEEEETTEEEEECTTCCBEEEEEE
T ss_pred             CCEEEEEEEC--CCCCceeCCCCcEEEEEEeCEEEEEE--CC--EEEEEcCCCEEEECCCCeEeeEcCC
Confidence            3445555553  4566888876 999999999998876  22  5789999999999999999999984

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.25  E-value=3e-06  Score=81.30  Aligned_cols=68  Identities=24%  Similarity=0.367  Sum_probs=55.6

Q ss_pred             eeecccccCCCcEEEEEeceEEEEEEeCCC-ceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          212 TLVVPHHSDAETILVLLKGKGVITLVSHER-RESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       212 ~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~-~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      +++.+|+++.++|+||++|+|.+.+-..+. .....|++||+|.||+|+.||+.+.. +..+..+-+|.+
T Consensus        95 ~~~~~H~H~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~-~~~~~airlF~~  163 (191)
T 1vr3_A           95 MFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDE-KNYVKAMRLFVG  163 (191)
T ss_dssp             HHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECT-TCCEEEEEEESS
T ss_pred             cCCcceECCcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCC-CCCEEEEEEECC
Confidence            355678888899999999999999876533 33579999999999999999999876 466777777764

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.25  E-value=4.7e-07  Score=85.97  Aligned_cols=68  Identities=18%  Similarity=0.309  Sum_probs=53.9

Q ss_pred             eeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          212 TLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       212 ~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      +++.+|+|+.+++.||++|+|.+.+...+......|++||+|.||+|+.||+.+.+ +..+..+-+|.+
T Consensus        91 ~~~~~H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~-~~~~~~ir~F~~  158 (179)
T 1zrr_A           91 KFLNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGS-EPNFTAIRIFDN  158 (179)
T ss_dssp             HHHSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSS-CSSCEEEEEECC
T ss_pred             ccccceECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCC-CceEEEEEeccC
Confidence            34667888899999999999999877333333567999999999999999999866 356777777753

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.21  E-value=1.3e-06  Score=77.88  Aligned_cols=66  Identities=11%  Similarity=0.162  Sum_probs=53.8

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      ..+...++++.|+.+.. |++..++++||++|++.|++  . +.+.+.|++||+++||+|++|.|.|.+.
T Consensus        47 g~~~~g~w~~~pG~~~~-~~~~~~E~~~Vl~G~~~l~~--~-~g~~~~l~~GD~~~ip~g~~h~~~~~~~  112 (123)
T 3bcw_A           47 GKVESGVWESTSGSFQS-NTTGYIEYCHIIEGEARLVD--P-DGTVHAVKAGDAFIMPEGYTGRWEVDRH  112 (123)
T ss_dssp             TTEEEEEEEEEEEEEEC-CCTTEEEEEEEEEEEEEEEC--T-TCCEEEEETTCEEEECTTCCCEEEEEEE
T ss_pred             CCEEEEEEEECCCceee-EcCCCcEEEEEEEEEEEEEE--C-CCeEEEECCCCEEEECCCCeEEEEECCc
Confidence            34667788889998875 33333999999999999986  2 3457899999999999999999999863

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=98.20  E-value=2.2e-06  Score=70.97  Aligned_cols=71  Identities=30%  Similarity=0.333  Sum_probs=55.2

Q ss_pred             eecCccceeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccc-cCCCcEEEEEeceEEEEEEeCCC
Q 039441          166 FHSQRFRYRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHH-SDAETILVLLKGKGVITLVSHER  241 (539)
Q Consensus       166 f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~-~dA~~~~yV~~G~g~i~~v~pg~  241 (539)
                      |...+-...+.+..|.+..  ....+-|.|.  ||+..|+-|   .|+|+..||| ..|.+|+||++|++.+++|.+.+
T Consensus         4 fnl~~~~p~~~n~~G~~~~--~~~~~~P~Ln~lgls~~r~~l---~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g   77 (79)
T 1dgw_X            4 FNLRSRDPIYSNNYGKLYE--ITPEKNSQLRDLDILLNCLQM---NEGALFVPHYNSRATVILVANEGRAEVELVGLEQ   77 (79)
T ss_dssp             EETTSSCCSEECSSEEEEE--ECTTTCHHHHTTTEEEEEEEE---CTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC-
T ss_pred             cccccCCCCccCCCCcEEE--EChhhCcccCcCCcceEEEEE---cCCcCcCCccCCCCcEEEEEEeceEEEEEecCCC
Confidence            4444445778899998743  3333336777  678888877   9999999997 58999999999999999999864

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.16  E-value=1e-05  Score=74.85  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=58.4

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+++.++.+. ++  ..|||....++.||++|++.+++   ++                        +.  ..|++||++
T Consensus        65 ~~s~g~~~~e-~~--~~~~~~~~eE~~yVLeG~~~l~i---~g------------------------~~--~~l~~GD~i  112 (151)
T 4axo_A           65 RLGCGMMEMK-ET--TFDWTLNYDEIDYVIDGTLDIII---DG------------------------RK--VSASSGELI  112 (151)
T ss_dssp             SCEEEEEEEE-EE--EEEEECSSEEEEEEEEEEEEEEE---TT------------------------EE--EEEETTCEE
T ss_pred             cEEEEEEEEc-Cc--cccEeCCCcEEEEEEEeEEEEEE---CC------------------------EE--EEEcCCCEE
Confidence            4788888887 33  35788899999999999999986   32                        22  579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +||+|.+|.+.|.  +.+.++++.+-+
T Consensus       113 ~iP~G~~h~~~n~--~~a~~l~V~~P~  137 (151)
T 4axo_A          113 FIPKGSKIQFSVP--DYARFIYVTYPA  137 (151)
T ss_dssp             EECTTCEEEEEEE--EEEEEEEEEECS
T ss_pred             EECCCCEEEEEeC--CCEEEEEEECCC
Confidence            9999999999997  567777765443

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.16  E-value=1.3e-06  Score=82.88  Aligned_cols=68  Identities=13%  Similarity=0.179  Sum_probs=54.5

Q ss_pred             eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441          370 MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS  449 (539)
Q Consensus       370 m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~  449 (539)
                      ++.+|+|+. .+|.||++|+|.+.|. .++                        +.+...|++||+++||+|.+|+..+.
T Consensus        92 ~~~~H~H~~-~Ei~~Vl~G~g~~~i~-~~d------------------------~~~~~~l~~GDli~IP~g~~H~~~~~  145 (179)
T 1zrr_A           92 FLNEHTHGE-DEVRFFVEGAGLFCLH-IGD------------------------EVFQVLCEKNDLISVPAHTPHWFDMG  145 (179)
T ss_dssp             HHSCBEESS-CEEEEEEESCCCCCEE-CSS------------------------CEEEEECCCSCEEEECTTCCBCCCCS
T ss_pred             cccceECCh-heEEEEEcceEEEEEE-eCC------------------------EEEEEEECCCCEEEECCCCeEeeecC
Confidence            357899975 8999999999999887 322                        35556799999999999999999887


Q ss_pred             CCCcEEEEEEeecC
Q 039441          450 PNEKLLTVGFSLNA  463 (539)
Q Consensus       450 gne~l~~v~F~~na  463 (539)
                      .+..+..+-|+.++
T Consensus       146 ~~~~~~~ir~F~~~  159 (179)
T 1zrr_A          146 SEPNFTAIRIFDNP  159 (179)
T ss_dssp             SCSSCEEEEEECCG
T ss_pred             CCceEEEEEeccCC
Confidence            66567777666554

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.05  E-value=2.4e-05  Score=76.25  Aligned_cols=98  Identities=23%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             CcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhH
Q 039441          333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQE  412 (539)
Q Consensus       333 p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~  412 (539)
                      +.|.+++|....+.+...  ...-+|.+.++.|.||+....|.|+ +.|+.||++|.+.+.+-...              
T Consensus       109 ~~f~~~~a~~elvGP~g~--~~s~~l~lG~v~l~PG~~yP~HsHp-~EEiy~VLsG~~e~~v~~g~--------------  171 (217)
T 4b29_A          109 RDFLNRFGWFELAGPSGH--FLTQSLRVTVGYWGPGLDYGWHEHL-PEELYSVVSGRALFHLRNAP--------------  171 (217)
T ss_dssp             HHHHHHEEEEEEEETTSS--EECSSCEEEEEEECSSCEEEEEECS-SEEEEEEEEECEEEEETTSC--------------
T ss_pred             hhHHhCceEEEEECCCCC--CCCCeEEEEEEEECCCCcCCCCCCC-CceEEEEEeCCEEEEECCCC--------------
Confidence            356677888777765433  2334699999999999999999996 78999999999999885331              


Q ss_pred             HHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          413 EEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       413 ~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                                    ...+.+||++++|+|.+|++.+ ++++|..+.+-+.
T Consensus       172 --------------~~~l~pGd~v~ipsgv~Ha~rt-~dePllalwvW~G  206 (217)
T 4b29_A          172 --------------DLMLEPGQTRFHPANAPHAMTT-LTDPILTLVLWRG  206 (217)
T ss_dssp             --------------CEEECTTCEEEECTTCCEEEEC-CSSCEEEEEEEES
T ss_pred             --------------EEecCCCCEEEcCCCCceeEEE-CCccEEEEEEEeC
Confidence                          1469999999999999999985 5788865543333

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.96  E-value=3.6e-05  Score=78.58  Aligned_cols=85  Identities=18%  Similarity=0.294  Sum_probs=69.6

Q ss_pred             EEEeeeCCCeeeccccc-CCCcEEEEEeceEEEEEEeCCCceeeecCC-C---cEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          203 LAILEANPSTLVVPHHS-DAETILVLLKGKGVITLVSHERRESFNMEH-G---DVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       203 l~il~l~P~~l~lPh~~-dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~-G---DV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      ..+.+++|+..+--||+ +..+++||++|+++|.+=++...+.+.+.. |   |+++||+|.+|.|.|.+ +++|+++.+
T Consensus       274 ~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~-~~~~~~~~~  352 (369)
T 3st7_A          274 VSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLG-DTDMVTIMW  352 (369)
T ss_dssp             EEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECS-SSCEEEEEE
T ss_pred             EEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcC-CCcEEEEEe
Confidence            34556699999999965 566999999999999998887777788877 8   99999999999999998 468988888


Q ss_pred             eccCC---CCCCce
Q 039441          278 LQPVN---TPGQFR  288 (539)
Q Consensus       278 ~d~~n---~pg~f~  288 (539)
                      .+..-   .|.+|.
T Consensus       353 ~~~~y~~~~~d~~~  366 (369)
T 3st7_A          353 VNEMFDPNQPDTYF  366 (369)
T ss_dssp             ESSCCCSSSCCCEE
T ss_pred             cCcccCCCCCcccc
Confidence            87653   355553

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=97.96  E-value=2.5e-05  Score=76.07  Aligned_cols=75  Identities=16%  Similarity=0.184  Sum_probs=62.5

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+++.++.|.|++..-.|.+.+++++||++|.+.+.+   ++...+.+.+||++++|+|++|++-+ + +++|.++.+.
T Consensus       130 ~~l~lG~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v---~~g~~~~l~pGd~v~ipsgv~Ha~rt-~-dePllalwvW  204 (217)
T 4b29_A          130 QSLRVTVGYWGPGLDYGWHEHLPEELYSVVSGRALFHL---RNAPDLMLEPGQTRFHPANAPHAMTT-L-TDPILTLVLW  204 (217)
T ss_dssp             SSCEEEEEEECSSCEEEEEECSSEEEEEEEEECEEEEE---TTSCCEEECTTCEEEECTTCCEEEEC-C-SSCEEEEEEE
T ss_pred             CeEEEEEEEECCCCcCCCCCCCCceEEEEEeCCEEEEE---CCCCEEecCCCCEEEcCCCCceeEEE-C-CccEEEEEEE
Confidence            46778888889999977777889999999999998887   33468899999999999999999985 4 4788655554

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=97.92  E-value=1.4e-05  Score=68.64  Aligned_cols=69  Identities=10%  Similarity=0.043  Sum_probs=51.6

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      +.+....+.||...   ||-...+++||++|++.+.+-  ++                        +.  ..|++||+++
T Consensus        31 ~~~~~~~~~pg~~~---~hH~~~E~~~Vl~G~~~~~i~--~g------------------------~~--~~l~~GD~i~   79 (101)
T 1o5u_A           31 EKWPIWEKEVSEFD---WYYDTNETCYILEGKVEVTTE--DG------------------------KK--YVIEKGDLVT   79 (101)
T ss_dssp             GGSCEEEECSEEEE---EECSSCEEEEEEEEEEEEEET--TC------------------------CE--EEEETTCEEE
T ss_pred             eEEEEEEeCCCccc---ccCCceEEEEEEeCEEEEEEC--CC------------------------CE--EEECCCCEEE
Confidence            44556778888753   334689999999999999873  12                        12  5799999999


Q ss_pred             eCCCCeEEEEcCCCCcEEEE
Q 039441          438 IPPGHPIALVASPNEKLLTV  457 (539)
Q Consensus       438 VPaG~~h~i~n~gne~l~~v  457 (539)
                      ||+|.+|.+.|.++....++
T Consensus        80 ip~g~~H~~~n~~~~~~~yv   99 (101)
T 1o5u_A           80 FPKGLRCRWKVLEPVRKHYN   99 (101)
T ss_dssp             ECTTCEEEEEEEEEEEEEEE
T ss_pred             ECCCCcEEEEeCCCeeEEEE
Confidence            99999999999765444443

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.88  E-value=4.4e-05  Score=77.95  Aligned_cols=81  Identities=20%  Similarity=0.212  Sum_probs=65.4

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCC---c
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG---V  434 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G---D  434 (539)
                      ..+...++.||.+...|||.+..++++|++|++.+.+-++...                       +.+...+. |   +
T Consensus       272 ~q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~-----------------------~~~~~~~~-~~~~~  327 (369)
T 3st7_A          272 GQVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDD-----------------------EIIEYYVS-GDKLE  327 (369)
T ss_dssp             CEEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCC-----------------------CCEEEEEE-TTBCC
T ss_pred             ceEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCC-----------------------cEEEEEec-CCcce
Confidence            3456778899999999999999999999999999988755431                       23433332 6   9


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          435 VFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +++||.|+.|.+.|.++++++++.+.+.
T Consensus       328 ~~~ip~g~~h~~~n~~~~~~~~~~~~~~  355 (369)
T 3st7_A          328 VVDIPVGYTHNIENLGDTDMVTIMWVNE  355 (369)
T ss_dssp             EEEECTTEEEEEEECSSSCEEEEEEESS
T ss_pred             EEEeCCCceEEeEEcCCCcEEEEEecCc
Confidence            9999999999999999889988875433

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.86  E-value=4.5e-05  Score=71.81  Aligned_cols=59  Identities=20%  Similarity=0.347  Sum_probs=52.7

Q ss_pred             CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      .||+-..=|+++.++++||++|..+|.+.+.|......|++||++.+|+|++|+-+..+
T Consensus        43 Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           43 GPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             SCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             CCCcCccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccC
Confidence            46777777888999999999999999999877677899999999999999999998764

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=97.82  E-value=0.00011  Score=68.18  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=68.5

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +..++++.+.||+.+.+|.|+. .+.+||++|...+   ..++                            ..+.+||.+
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~---~e~~----------------------------~~~~~Gd~~   88 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTG-TVIVYTVQGSWRY---KEHD----------------------------WVAHAGSVV   88 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESS-CEEEEEEESCEEE---TTSS----------------------------CCBCTTCEE
T ss_pred             CeEEEEEEECCCCCcccccCCC-CEEEEEEEeEEEE---eCCC----------------------------eEECCCeEE
Confidence            4788999999999999999965 7889999999864   2221                            258999999


Q ss_pred             EeCCCCeEEEEcC--CCCcEEEEEEeecCCCCccccccccchhcccCcHHHH
Q 039441          437 IIPPGHPIALVAS--PNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETM  486 (539)
Q Consensus       437 vVPaG~~h~i~n~--gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evL  486 (539)
                      +.|+|..|...+.  +++++.++...+.+    ..|+....++++-++....
T Consensus        89 ~~P~g~~H~~~~~~~~~e~~~~~~~~~G~----l~~~~~~g~~~~~~d~~~~  136 (159)
T 3ebr_A           89 YETASTRHTPQSAYAEGPDIITFNIVAGE----LLYLDDKDNIIAVENWKTS  136 (159)
T ss_dssp             EECSSEEECEEESSSSSSCEEEEEEEESC----EEEECTTCCEEEEECHHHH
T ss_pred             EECCCCcceeEeCCCCCCCEEEEEEecCc----cEecCCCCCEEEEcCHHHH
Confidence            9999999999997  67787766645443    1233333445544444333

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=97.82  E-value=3e-05  Score=69.00  Aligned_cols=72  Identities=15%  Similarity=0.141  Sum_probs=54.7

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+.+....++||.... |+|. ..+++||++|++.+.+-  ++                        ..  ..|++||++
T Consensus        48 ~~~~g~w~~~pG~~~~-~~~~-~~E~~~Vl~G~~~l~~~--~g------------------------~~--~~l~~GD~~   97 (123)
T 3bcw_A           48 KVESGVWESTSGSFQS-NTTG-YIEYCHIIEGEARLVDP--DG------------------------TV--HAVKAGDAF   97 (123)
T ss_dssp             TEEEEEEEEEEEEEEC-CCTT-EEEEEEEEEEEEEEECT--TC------------------------CE--EEEETTCEE
T ss_pred             CEEEEEEEECCCceee-EcCC-CcEEEEEEEEEEEEEEC--CC------------------------eE--EEECCCCEE
Confidence            4888899999998753 5542 28999999999998762  33                        12  469999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEE
Q 039441          437 IIPPGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~  458 (539)
                      +||+|.+|.+.|.+.....++.
T Consensus        98 ~ip~g~~h~~~~~~~~rK~yv~  119 (123)
T 3bcw_A           98 IMPEGYTGRWEVDRHVKKIYFV  119 (123)
T ss_dssp             EECTTCCCEEEEEEEEEEEEEE
T ss_pred             EECCCCeEEEEECCceeEEEEE
Confidence            9999999999997554334443

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=97.72  E-value=0.0001  Score=65.93  Aligned_cols=59  Identities=15%  Similarity=0.268  Sum_probs=48.0

Q ss_pred             cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          215 VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       215 lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      -||.++.-++.||++|+|.+.+    ...++.|++||++.||+|++|++.+.+++.+...+.+
T Consensus        32 ~p~~h~~~~i~~v~~G~~~~~i----~~~~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i   90 (164)
T 2arc_A           32 RPLGMKGYILNLTIRGQGVVKN----QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV   90 (164)
T ss_dssp             ETTCCSSEEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEE
T ss_pred             cccCCCceEEEEEEEeEEEEEE----CCEEEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEE
Confidence            4888999999999999999987    3368999999999999999999998753244443333

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=97.64  E-value=0.00016  Score=68.11  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=51.1

Q ss_pred             CCCeeecccccCCCcEEEEEeceEEEEEEeCC----CceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHE----RRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg----~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      .||+-.-=||.+.++|+||++|..+|.+.+.|    ......|++||++.+|+|++|+=+-..
T Consensus        42 GPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~  104 (176)
T 1zvf_A           42 GPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFA  104 (176)
T ss_dssp             SSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECT
T ss_pred             CCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccC
Confidence            46675666789999999999999999999966    346799999999999999999997764

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=97.61  E-value=7.9e-05  Score=67.79  Aligned_cols=98  Identities=7%  Similarity=-0.095  Sum_probs=64.1

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      -.+.++.+.||+.+.+|+|+. .+.+||++|+....    .+.                       ......|++||.++
T Consensus        44 ~~~~~~~~~pG~~~p~H~H~~-~ee~~VL~G~~~~~----~g~-----------------------~~~~~~~~~Gd~~~   95 (145)
T 2o1q_A           44 SWTAIFDCPAGSSFAAHVHVG-PGEYFLTKGKMDVR----GGK-----------------------AAGGDTAIAPGYGY   95 (145)
T ss_dssp             EEEEEEEECTTEEECCEEESS-CEEEEEEEEEEEET----TCG-----------------------GGTSEEEESSEEEE
T ss_pred             cEEEEEEECCCCCCCccCCCC-CEEEEEEEeEEEEc----CCC-----------------------EecceEeCCCEEEE
Confidence            468889999999999999975 56699999999852    220                       01125689999999


Q ss_pred             eCCCCeEE-EEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHH
Q 039441          438 IPPGHPIA-LVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVA  489 (539)
Q Consensus       438 VPaG~~h~-i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~A  489 (539)
                      +|+|..|. ..+.  ++..++.+++.+    ..|+....+...-++......+
T Consensus        96 ~p~g~~H~p~~~~--e~~~~l~~~~gp----~~f~~~~g~~~~~~d~~~~~~~  142 (145)
T 2o1q_A           96 ESANARHDKTEFP--VASEFYMSFLGP----LTFVKPDGSPIAVIGWEDAQGA  142 (145)
T ss_dssp             ECTTCEESCCEEE--EEEEEEEEEESC----EEEECTTSCEEEEECHHHHHHH
T ss_pred             ECcCCccCCeECC--CCeEEEEEECCc----ceecCCCCCEeEEecHHHHHHh
Confidence            99999999 4333  345555444333    1344333444444554444443

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=97.59  E-value=0.00017  Score=65.53  Aligned_cols=71  Identities=11%  Similarity=-0.066  Sum_probs=55.9

Q ss_pred             eEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCcee--eecCCCcEEEeCCCCeEE-EEecCCCceEEEEEEe
Q 039441          202 RLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRES--FNMEHGDVISVPAGTTYY-LSNQDNVDRLHVAKLL  278 (539)
Q Consensus       202 Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~--~~v~~GDV~~iPaG~~h~-i~N~g~~e~L~iv~l~  278 (539)
                      .+++++++|++.+-+|.|...+.+||++|+...    ......  ..|++||.+++|+|..|. ..+.+   .+.++.++
T Consensus        45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~----~~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~~e---~~~~l~~~  117 (145)
T 2o1q_A           45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV----RGGKAAGGDTAIAPGYGYESANARHDKTEFPV---ASEFYMSF  117 (145)
T ss_dssp             EEEEEEECTTEEECCEEESSCEEEEEEEEEEEE----TTCGGGTSEEEESSEEEEECTTCEESCCEEEE---EEEEEEEE
T ss_pred             EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE----cCCCEecceEeCCCEEEEECcCCccCCeECCC---CeEEEEEE
Confidence            467788899999999988889999999999974    233334  789999999999999999 55543   35555555


Q ss_pred             c
Q 039441          279 Q  279 (539)
Q Consensus       279 d  279 (539)
                      +
T Consensus       118 ~  118 (145)
T 2o1q_A          118 L  118 (145)
T ss_dssp             E
T ss_pred             C
Confidence            5

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=97.55  E-value=0.01  Score=58.64  Aligned_cols=180  Identities=14%  Similarity=0.123  Sum_probs=111.0

Q ss_pred             eeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCC--CeEEEEecCCCceEEEEEEeccCCC
Q 039441          207 EANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAG--TTYYLSNQDNVDRLHVAKLLQPVNT  283 (539)
Q Consensus       207 ~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG--~~h~i~N~g~~e~L~iv~l~d~~n~  283 (539)
                      .+.|++-+-|| |.+-+-|.||++|...-.  +. .-....|++|||-.+-||  +.|.-.|..+++.|+++-|.-.   
T Consensus        47 ~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS-~Gn~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv~---  120 (242)
T 1tq5_A           47 VIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DS-MGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM---  120 (242)
T ss_dssp             EECTTCEEEEEEECSCEEEEEEEESEEEEE--ES-SSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEEC---
T ss_pred             eeCCCCcCCCcCCCCcEEEEEEEEeEEEEE--eC-CCCcEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEEc---
Confidence            34887655677 899999999999974321  21 124567999999999666  8899999765567776654421   


Q ss_pred             CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEeC-CcccccccccceeEEE
Q 039441          284 PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEAT-PKDYQQLQEIDAGVTY  362 (539)
Q Consensus       284 pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~-~~~fP~L~~l~isva~  362 (539)
                      |                 . . +...|              .|.-.. -|...  .|++.... ..+-|.-...++.+..
T Consensus       121 P-----------------~-~-k~~~P--------------~y~~~~-~p~~~--~g~~iag~~g~~~p~~~~~~~~~~~  164 (242)
T 1tq5_A          121 P-----------------E-E-NGITP--------------RYEQRR-FDAVQ--GKQLVLSPDARDGSLKVHQDMELYR  164 (242)
T ss_dssp             C-----------------S-S-CSCCC--------------EEEEEC-CCCCS--SEEEEEESSCGGGCEECSSSCEEEE
T ss_pred             c-----------------h-h-cCCCC--------------cceeec-CCchh--CCEEEEecCCCCCcEeccCCCEEEE
Confidence            1                 1 0 11111              111111 11111  23322221 1122332334688888


Q ss_pred             EEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCC
Q 039441          363 VEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGH  442 (539)
Q Consensus       363 v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~  442 (539)
                      +.|.+|+-+.....+.-.-++||++|++.+     ++                            ..|.+||.+++..+-
T Consensus       165 ~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v-----~g----------------------------~~l~~gd~~~~~~~~  211 (242)
T 1tq5_A          165 WALLKDEQSVHQIAAERRVWIQVVKGNVTI-----NG----------------------------VKASTSDGLAIWDEQ  211 (242)
T ss_dssp             EEECTTCEEEECCCTTCEEEEEEEESEEEE-----TT----------------------------EEEETTCEEEEESCS
T ss_pred             EEECCCCEEEeecCCCcEEEEEEccCcEEE-----CC----------------------------EEeCCCCEEEECCCC
Confidence            999999977554444556789999999876     22                            148899999998887


Q ss_pred             eEEEEcCCCCcEEEEEEeecC
Q 039441          443 PIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       443 ~h~i~n~gne~l~~v~F~~na  463 (539)
                      ...+.|.  ++..+|.|....
T Consensus       212 ~l~l~a~--~~a~~Ll~~~~~  230 (242)
T 1tq5_A          212 AISIHAD--SDSEVLLFDLPP  230 (242)
T ss_dssp             CEEEEES--SSEEEEEEEECC
T ss_pred             eEEEEeC--CCCEEEEEECCc
Confidence            7777774  456666665443

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=97.50  E-value=0.013  Score=58.37  Aligned_cols=191  Identities=14%  Similarity=0.119  Sum_probs=114.4

Q ss_pred             Ccceee-EEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCC--CeEEEEecCCCceE
Q 039441          197 GIDNYR-LAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAG--TTYYLSNQDNVDRL  272 (539)
Q Consensus       197 gv~~~R-l~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG--~~h~i~N~g~~e~L  272 (539)
                      +....| +.-.++.|++-+-|| |.+-+-|.||++|...-.  +. .-....|++|||-.+-||  +.|.-.|..+++.|
T Consensus        59 ~fg~l~vln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS-~Gn~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l  135 (256)
T 2vec_A           59 GYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DS-EGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPL  135 (256)
T ss_dssp             SCCCEEEEEEEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ET-TSCEEEEETTEEEEECCCTTCCEEEEECCSSSCE
T ss_pred             cCCceEeccccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eC-CCCEEEECCCeEEEEECCCCeEEEEEECCCCceE
Confidence            444444 233445887666677 888889999999984322  21 234677999999999776  68999998656778


Q ss_pred             EEEEEeccCCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEe-CCcccc
Q 039441          273 HVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEA-TPKDYQ  351 (539)
Q Consensus       273 ~iv~l~d~~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~-~~~~fP  351 (539)
                      +++-|.-.                   ++....   .|.-           ..+.+.   +    ...++..- +..+-|
T Consensus       136 ~~lQlWi~-------------------l~p~~~---~P~y-----------q~~~~p---~----~~~~lIag~~G~~~p  175 (256)
T 2vec_A          136 TRMQLWLD-------------------ACPQRE---NPLI-----------QKLALN---M----GKQQLIASPEGAMGS  175 (256)
T ss_dssp             EEEEEEEE-------------------CCTTSC---CCSE-----------EEEECC---C----SSEEEEEESSCGGGC
T ss_pred             EEEEEEEe-------------------CChhcC---CCCc-----------eEEcCC---C----CCEEEEEeCCCCCCc
Confidence            77665531                   100000   0000           001111   0    01121111 111223


Q ss_pred             cccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeC
Q 039441          352 QLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLS  431 (539)
Q Consensus       352 ~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~  431 (539)
                      .--..++.+..+.|.+|+-+.....++- -++||++|++.|.  ...                          .-...|.
T Consensus       176 ~~~~~~~~~~~~~L~~g~~~~~~~~~~~-~~l~v~~G~v~v~--g~~--------------------------~~~~~l~  226 (256)
T 2vec_A          176 LQLRQQVWLHHIVLDKGESANFQLHGPR-AYLQSIHGKFHAL--THH--------------------------EEKAALT  226 (256)
T ss_dssp             EECSSSCEEEEEEECTTCEEEEECSSSE-EEEEEEESCEEEE--ETT--------------------------EEEEEEC
T ss_pred             eEccCCcEEEEEEECCCCEEEEecCCCe-EEEEEEECEEEEC--Ccc--------------------------ccceEEC
Confidence            2223468888899999998765554333 8899999988763  111                          0123589


Q ss_pred             CCcEEEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          432 PGVVFIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       432 ~GDV~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      +||.++|-.+-...+.+.  ++..+|.|..
T Consensus       227 ~gd~~~l~~~~~l~l~a~--~~a~~LL~dl  254 (256)
T 2vec_A          227 CGDGAFIRDEANITLVAD--SPLRALLIDL  254 (256)
T ss_dssp             TTCEEEEESCSEEEEEES--SSEEEEEEEE
T ss_pred             CCCEEEECCCCeEEEEeC--CCCEEEEEEe
Confidence            999999988877777774  4567766553

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=97.48  E-value=0.028  Score=56.47  Aligned_cols=200  Identities=14%  Similarity=0.100  Sum_probs=112.7

Q ss_pred             CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeC-----C-CceeeecCCCcEEEeCCCCeEEEEecCCCc
Q 039441          197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSH-----E-RRESFNMEHGDVISVPAGTTYYLSNQDNVD  270 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~p-----g-~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e  270 (539)
                      |..-+.+.+++|+|+.-+.-.--+-...+.++.|++.|++=..     + ....|+=.+.|.++||.|+..-|...++  
T Consensus        25 ~~~y~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~--  102 (270)
T 2qjv_A           25 GWEYVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETD--  102 (270)
T ss_dssp             TSSSCEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSS--
T ss_pred             CcEEeEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEEEecCC--
Confidence            5555667778889988766555566667778899999987210     0 1112222236999999999888888763  


Q ss_pred             eEEEEEEeccCCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEeCCccc
Q 039441          271 RLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDY  350 (539)
Q Consensus       271 ~L~iv~l~d~~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~f  350 (539)
                       ++|+..--+...  .|.        ...++.+++....       .+.+               +| --.|..+-..++
T Consensus       103 -~~~~v~sAp~~~--~~p--------~r~i~~~d~~~~~-------rG~g---------------~n-~R~V~~i~~~~~  148 (270)
T 2qjv_A          103 -LELAVCSAPGFG--ELP--------VRLISPQEVGVEH-------RGXG---------------RN-QRLVHNILPDSQ  148 (270)
T ss_dssp             -EEEEEEEEECCS--CCC--------CEEECGGGSEEEE-------ESSG---------------GG-CEEEEEEECTTS
T ss_pred             -ceEEEEeeecCC--cCC--------cEEECHHHCCeEe-------ccCc---------------cc-hhhhhhhcCCCC
Confidence             554443333221  000        0111111111000       0000               11 112323222234


Q ss_pred             ccccccceeEEEEEEcCCcee---cceecCCC--C------EEEEE-Ee---ceEEEEEecCCCCccchhhhhhhhHHHH
Q 039441          351 QQLQEIDAGVTYVEINQGGMM---VPHYNSKA--T------TIVLV-VE---GRGRFEMGGPLSSRWSQESQREQQEEEE  415 (539)
Q Consensus       351 P~L~~l~isva~v~L~pGgm~---~PHwhpnA--~------ei~yV-~~---G~g~v~vV~p~gs~~s~~~~~g~~~~~~  415 (539)
                      |.   -.|-|..+ |+|||.-   .||-|...  .      |+.|. +.   |-|.--|..++++-              
T Consensus       149 ~a---~~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~--------------  210 (270)
T 2qjv_A          149 LA---DSLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSL--------------  210 (270)
T ss_dssp             CC---SSCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSS--------------
T ss_pred             Cc---ceEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCC--------------
Confidence            43   34667766 9999987   99999754  5      88876 43   44544444444321              


Q ss_pred             HHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          416 EEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       416 ~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                               -.+..|+-||+++||.|+ |-..+...-.+=+|-+.
T Consensus       211 ---------de~~~V~~~d~VlvP~Gy-Hp~~a~pGy~~YylwvM  245 (270)
T 2qjv_A          211 ---------DECMAVYNRDVVXVPXGY-HPVATIAGYDNYYLNVM  245 (270)
T ss_dssp             ---------EEEEEEETTCEEEESSSB-CCEEECTTCEEEEEEEE
T ss_pred             ---------ceEEEEECCCEEecCCCc-CCCcCCCCcccEEEEEE
Confidence                     124789999999999999 88766533333355433

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=97.48  E-value=0.00025  Score=65.84  Aligned_cols=73  Identities=14%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec--CCCceEEEEEE
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ--DNVDRLHVAKL  277 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~--g~~e~L~iv~l  277 (539)
                      ...++++++.|++.+-+|.|...+.+||++|+....   ..   ...+.+||.++.|+|+.|...+.  + ++.++++.+
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~---e~---~~~~~~Gd~~~~P~g~~H~~~~~~~~-~e~~~~~~~  113 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK---EH---DWVAHAGSVVYETASTRHTPQSAYAE-GPDIITFNI  113 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESSCEEEEEEESCEEET---TS---SCCBCTTCEEEECSSEEECEEESSSS-SSCEEEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCCCEEEEEEEeEEEEe---CC---CeEECCCeEEEECCCCcceeEeCCCC-CCCEEEEEE
Confidence            466788889999999999888899999999997642   21   14799999999999999999998  5 366766554


Q ss_pred             ec
Q 039441          278 LQ  279 (539)
Q Consensus       278 ~d  279 (539)
                      .+
T Consensus       114 ~~  115 (159)
T 3ebr_A          114 VA  115 (159)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=97.46  E-value=0.00051  Score=62.52  Aligned_cols=70  Identities=7%  Similarity=0.036  Sum_probs=53.5

Q ss_pred             CCceecceecCCCCEEEEEEeceEEEEEecCC-CCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE
Q 039441          367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL-SSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA  445 (539)
Q Consensus       367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~-gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~  445 (539)
                      ++++...|-|.++++++||++|+.++.+-... .+.                      .--.-.|++|++++||+|.-|.
T Consensus        38 ~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~----------------------~d~~V~l~~Ge~yvVPkGveH~   95 (140)
T 3d0j_A           38 IEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKF----------------------NIELTLMEKGKVYNVPAECWFY   95 (140)
T ss_dssp             TTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEE----------------------EEEEEECCTTCCEEECTTCEEE
T ss_pred             cccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCC----------------------ccceEEecCCCEEEeCCCccCc
Confidence            44788889999999999999999999988531 100                      1223579999999999999999


Q ss_pred             EEcCCCCcEEEEEEe
Q 039441          446 LVASPNEKLLTVGFS  460 (539)
Q Consensus       446 i~n~gne~l~~v~F~  460 (539)
                      -.+..  ...++-|.
T Consensus        96 p~a~~--e~~vLLiE  108 (140)
T 3d0j_A           96 SITQK--DTKMMYVQ  108 (140)
T ss_dssp             EEECT--TCEEEEEE
T ss_pred             ccCCC--ceEEEEEE
Confidence            99964  35555444

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=97.44  E-value=0.00068  Score=61.72  Aligned_cols=56  Identities=27%  Similarity=0.392  Sum_probs=45.7

Q ss_pred             eeeccc-ccCCCcEEEEEeceEEEEEEeCCC----ceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          212 TLVVPH-HSDAETILVLLKGKGVITLVSHER----RESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       212 ~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~----~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      .+.-.| |.+.|+++||++|+.+|-+-+.+.    -....+++|+++.||+|+-|--....
T Consensus        40 ~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~  100 (140)
T 3d0j_A           40 GIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQK  100 (140)
T ss_dssp             TCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECT
T ss_pred             cCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCC
Confidence            444444 889999999999999999875321    23688999999999999999998865

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=97.44  E-value=0.00037  Score=65.13  Aligned_cols=74  Identities=14%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             eeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC-CceEEEEEEec
Q 039441          201 YRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN-VDRLHVAKLLQ  279 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~-~e~L~iv~l~d  279 (539)
                      ..+.++++.|++.+-+|.|...+.+||++|+....    +. ..+.+.+||.+++|+|+.|...+..+ .+.+.++.+.+
T Consensus        43 ~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~----~~-~~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~  117 (165)
T 3cjx_A           43 LMVMRASFAPGLTLPLHFHTGTVHMYTISGCWYYT----EY-PGQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLS  117 (165)
T ss_dssp             EEEEEEEECTTCBCCEEEESSCEEEEEEESEEEET----TC-TTSCEETTEEEEECTTCEECEECCTTCSSCEEEEEEEE
T ss_pred             cEEEEEEECCCCcCCcccCCCCEEEEEEEEEEEEC----CC-ceEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEe
Confidence            45778889999999999999999999999998752    21 14678999999999999999999653 33665554443

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=97.36  E-value=0.0012  Score=58.87  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=47.5

Q ss_pred             ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCC
Q 039441          371 MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASP  450 (539)
Q Consensus       371 ~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~g  450 (539)
                      ..||.| +..+|+||++|+|.+.+   ++                        +  ...|++||+++||+|.+|...+.+
T Consensus        31 ~~p~~h-~~~~i~~v~~G~~~~~i---~~------------------------~--~~~l~~Gd~~~i~p~~~H~~~~~~   80 (164)
T 2arc_A           31 DRPLGM-KGYILNLTIRGQGVVKN---QG------------------------R--EFVCRPGDILLFPPGEIHHYGRHP   80 (164)
T ss_dssp             EETTCC-SSEEEEEEEEECEEEEE---TT------------------------E--EEEECTTCEEEECTTCCEEEEECT
T ss_pred             ccccCC-CceEEEEEEEeEEEEEE---CC------------------------E--EEEecCCeEEEEcCCCCEEEEeCC
Confidence            358887 78899999999999977   21                        1  257999999999999999988865


Q ss_pred             C-CcEEEEEEeec
Q 039441          451 N-EKLLTVGFSLN  462 (539)
Q Consensus       451 n-e~l~~v~F~~n  462 (539)
                      + ++..++.+..+
T Consensus        81 ~~~~~~~~~i~f~   93 (164)
T 2arc_A           81 EAREWYHQWVYFR   93 (164)
T ss_dssp             TSSEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEC
Confidence            3 55655544433

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=97.30  E-value=0.001  Score=62.79  Aligned_cols=93  Identities=14%  Similarity=0.102  Sum_probs=63.2

Q ss_pred             eeEEEEEEcCCceecceecCC------CCEEEEEEeceEEEEEecCCCCccch---hhhhhhhHHHHHHhhhcceeeE-E
Q 039441          358 AGVTYVEINQGGMMVPHYNSK------ATTIVLVVEGRGRFEMGGPLSSRWSQ---ESQREQQEEEEEEESSRELQKI-S  427 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpn------A~ei~yV~~G~g~v~vV~p~gs~~s~---~~~~g~~~~~~~e~~~~~y~~~-~  427 (539)
                      ...-.+.|.||.+.+.|+||.      -.|=.+|+.|.+++.+  .+......   -. .|.         ...|.+- .
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~-dg~---------~~~~~a~~~  120 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPP-QED---------REHYTVWHE  120 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCC-GGG---------GGGCCCCEE
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceecc-CCc---------eeeecCCcE
Confidence            778899999999999999999      8888889999977766  32110000   00 000         0011111 1


Q ss_pred             eeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          428 ANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       428 ~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      -.|++||.+.||+|.+|++.|. .+++.+..|.+..
T Consensus       121 i~L~pGesvtIppg~~H~f~ag-eegvli~EvSt~~  155 (175)
T 2y0o_A          121 IELEPGGQYTIPPNTKHWFQAG-EEGAVVTEMSSTS  155 (175)
T ss_dssp             EEECTTCEEEECTTCCEEEEEE-EEEEEEEEEEECC
T ss_pred             EEECCCCEEEECCCCcEEEEeC-CCCEEEEEEeCCC
Confidence            3699999999999999999994 3456666665543

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.30  E-value=0.0016  Score=61.33  Aligned_cols=59  Identities=14%  Similarity=0.167  Sum_probs=49.2

Q ss_pred             cCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE
Q 039441          366 NQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA  445 (539)
Q Consensus       366 ~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~  445 (539)
                      .||+-+.=|.| ...++.||++|...+.+.+.+                         +.-+..|++||+|+||+|.+|.
T Consensus        43 Gpn~r~d~H~h-~~dE~FyvlkG~m~i~v~d~g-------------------------~~~~v~l~eGE~f~lP~gvpH~   96 (174)
T 1yfu_A           43 GPNHRTDYHDD-PLEEFFYQLRGNAYLNLWVDG-------------------------RRERADLKEGDIFLLPPHVRHS   96 (174)
T ss_dssp             SCBCCCCEEEC-SSCEEEEEEESCEEEEEEETT-------------------------EEEEEEECTTCEEEECTTCCEE
T ss_pred             CCCcCccCcCC-CCceEEEEEeeEEEEEEEcCC-------------------------ceeeEEECCCCEEEeCCCCCcC
Confidence            46666777877 899999999999999999853                         2334689999999999999999


Q ss_pred             EEcCC
Q 039441          446 LVASP  450 (539)
Q Consensus       446 i~n~g  450 (539)
                      -.+.+
T Consensus        97 P~r~~  101 (174)
T 1yfu_A           97 PQRPE  101 (174)
T ss_dssp             EEBCC
T ss_pred             ccccC
Confidence            88864

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.28  E-value=0.0058  Score=57.61  Aligned_cols=82  Identities=13%  Similarity=0.007  Sum_probs=62.1

Q ss_pred             EEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeC---CCcEEEeC
Q 039441          363 VEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLS---PGVVFIIP  439 (539)
Q Consensus       363 v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~---~GDV~vVP  439 (539)
                      ....+|.++..|||..-.++++|++|+..+-+|+-...+..-                .  +.....|.   ....++||
T Consensus        58 s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTf----------------g--~~~~v~Ls~~~n~~~L~IP  119 (174)
T 3ejk_A           58 SEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTS----------------G--RLAQVTLGRPDNYRLLRIP  119 (174)
T ss_dssp             EEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTT----------------T--CEEEEEEETTTBCEEEEEC
T ss_pred             EECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCC----------------C--eEEEEEECCccCceEEEeC
Confidence            345799999999998899999999999999999864311000                0  24456676   67899999


Q ss_pred             CCCeEEEEcCCCCcEEEEEEeec
Q 039441          440 PGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +|++|-+.+.++++..++.+.+.
T Consensus       120 ~G~aHgf~~lsd~~av~ly~~s~  142 (174)
T 3ejk_A          120 PQVWYGFAATGDTPALVANCTDI  142 (174)
T ss_dssp             TTCEEEEEECTTSCEEEEEEESS
T ss_pred             CCcEEEEEEccCCCEEEEEECCC
Confidence            99999999987756776655443

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=97.23  E-value=0.0012  Score=61.59  Aligned_cols=74  Identities=11%  Similarity=0.119  Sum_probs=57.4

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +..+.++.+.||+.+.+|+|+ ..+.+||++|....+   .++                           +..+.+||.+
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~-g~ee~~VL~G~f~~~---~~~---------------------------~~~~~aGd~~   90 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHT-GTVHMYTISGCWYYT---EYP---------------------------GQKQTAGCYL   90 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEES-SCEEEEEEESEEEET---TCT---------------------------TSCEETTEEE
T ss_pred             CcEEEEEEECCCCcCCcccCC-CCEEEEEEEEEEEEC---CCc---------------------------eEEECCCeEE
Confidence            467899999999999999995 579999999998762   111                           1357999999


Q ss_pred             EeCCCCeEEEEcCC--CCcEEEEEEee
Q 039441          437 IIPPGHPIALVASP--NEKLLTVGFSL  461 (539)
Q Consensus       437 vVPaG~~h~i~n~g--ne~l~~v~F~~  461 (539)
                      ++|+|..|...+..  +++..+|.+.+
T Consensus        91 ~~P~g~~H~~~a~~~~~~gci~l~v~~  117 (165)
T 3cjx_A           91 YEPGGSIHQFNTPRDNEGQTEVIFMLS  117 (165)
T ss_dssp             EECTTCEECEECCTTCSSCEEEEEEEE
T ss_pred             EeCCCCceeeEeCCCCCCCcEEEEEEe
Confidence            99999999999964  23564444333

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.20  E-value=0.0014  Score=57.95  Aligned_cols=63  Identities=17%  Similarity=0.308  Sum_probs=49.9

Q ss_pred             eeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          201 YRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      +...+-+..|+.+.... ...++++||++|+++|+.-   ..+...|++||+++||+|..--|.-..
T Consensus        42 ~~~GvWe~tPG~~~~~~-~~~~E~~~iLeG~~~lt~d---dG~~~~l~aGD~~~~P~G~~gtWev~e  104 (116)
T 3es4_A           42 TIVAVWMAEPGIYNYAG-RDLEETFVVVEGEALYSQA---DADPVKIGPGSIVSIAKGVPSRLEILS  104 (116)
T ss_dssp             CEEEEEEECSEEEEECC-CSEEEEEEEEECCEEEEET---TCCCEEECTTEEEEECTTCCEEEEECS
T ss_pred             EEEEEEecCCceeECee-CCCcEEEEEEEeEEEEEeC---CCeEEEECCCCEEEECCCCeEEEEEeE
Confidence            34556677999988754 3345999999999999852   245789999999999999998886654

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=97.03  E-value=0.0068  Score=56.89  Aligned_cols=87  Identities=13%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..+...||.-..+|=|.++.-+++|++|+...++....+..                   .. ..-...|.+||++
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~-------------------~~-~~~~~~l~~G~~~  127 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEH-------------------AE-LSNSYFVHEGECL  127 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSS-------------------EE-EEEEEEEETTCEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCc-------------------ee-ecceEEeCCCcEE
Confidence            468889999999999999998899999999999999887543210                   00 1234578999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ++|.+.+|.+.|.++++.+.|-+..-+
T Consensus       128 ~~~~~~iH~V~N~~~~~aVSlHvY~pp  154 (171)
T 3eqe_A          128 ISTKGLIHKMSNPTSERMVSLHVYSPP  154 (171)
T ss_dssp             EECTTCEEEEECCSSSCEEEEEEEESC
T ss_pred             EeCCCCEEEEECCCCCCEEEEEEeCCC
Confidence            999999999999988877777655443

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=97.03  E-value=0.0025  Score=60.20  Aligned_cols=78  Identities=14%  Similarity=0.230  Sum_probs=55.8

Q ss_pred             eeeEEEeeeCCCeeecccccC-------CCcEEEEEeceEEEEEEeCCCc-------------------eeeecCCCcEE
Q 039441          200 NYRLAILEANPSTLVVPHHSD-------AETILVLLKGKGVITLVSHERR-------------------ESFNMEHGDVI  253 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~d-------A~~~~yV~~G~g~i~~v~pg~~-------------------~~~~v~~GDV~  253 (539)
                      .|-..+|.+.|+...-.|+|.       -.+=++|+.|.+.+.+  ++..                   ....|++||.+
T Consensus        52 ~Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesv  129 (175)
T 2y0o_A           52 RYCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQY  129 (175)
T ss_dssp             SEEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEE
T ss_pred             CceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCceeeecCCcEEEECCCCEE
Confidence            488888999998877777443       3466669999977766  4422                   23489999999


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEEeccCC
Q 039441          254 SVPAGTTYYLSNQDNVDRLHVAKLLQPVN  282 (539)
Q Consensus       254 ~iPaG~~h~i~N~g~~e~L~iv~l~d~~n  282 (539)
                      .||+|+.||+.|..  +. .+|.-+.+.|
T Consensus       130 tIppg~~H~f~age--eg-vli~EvSt~~  155 (175)
T 2y0o_A          130 TIPPNTKHWFQAGE--EG-AVVTEMSSTS  155 (175)
T ss_dssp             EECTTCCEEEEEEE--EE-EEEEEEEECC
T ss_pred             EECCCCcEEEEeCC--CC-EEEEEEeCCC
Confidence            99999999999932  22 4455555444

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=96.98  E-value=0.0043  Score=58.27  Aligned_cols=81  Identities=16%  Similarity=0.315  Sum_probs=64.8

Q ss_pred             eeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeC-CC-c---eeeecCCCcEEEeCCCCeEEEEecCCCceEE
Q 039441          200 NYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSH-ER-R---ESFNMEHGDVISVPAGTTYYLSNQDNVDRLH  273 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~p-g~-~---~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~  273 (539)
                      .+-|.+|...|+..--+| |.++..+++|++|+.+.++-.. ++ .   .+..+.+||++++|+|.+|.+.|.++ +..+
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~-~~aV  146 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTS-ERMV  146 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSS-SCEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCC-CCEE
Confidence            456777788999999888 7788999999999999886542 22 1   35678999999999999999999985 6776


Q ss_pred             EEEEeccC
Q 039441          274 VAKLLQPV  281 (539)
Q Consensus       274 iv~l~d~~  281 (539)
                      .|-+.-+.
T Consensus       147 SlHvY~pp  154 (171)
T 3eqe_A          147 SLHVYSPP  154 (171)
T ss_dssp             EEEEEESC
T ss_pred             EEEEeCCC
Confidence            66666543

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=96.97  E-value=0.0026  Score=62.80  Aligned_cols=64  Identities=17%  Similarity=0.413  Sum_probs=52.6

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      .+...+.+..|+. ..+.+++.++++||++|+++|+.  . .-+...+++||+++||+|+.--|.-..
T Consensus       166 ~~~~GiW~~tpG~-~~~~~~~~~E~~~ILeG~v~lt~--~-~G~~~~~~aGD~~~~P~G~~~tWev~e  229 (238)
T 3myx_A          166 TLRIGVWDSTPYE-RISRPHKIHELMNLIEGRVVLSL--E-NGSSLTVNTGDTVFVAQGAPCKWTSTG  229 (238)
T ss_dssp             SCEEEEEEECCEE-BCCEECSSCEEEEEEECCEEEEE--T-TSCEEEECTTCEEEECTTCEEEEEESS
T ss_pred             CEEEeEEEeCCCE-EECCcCCCCEEEEEEEeEEEEEe--C-CCCEEEECCCCEEEECCCCEEEEEECc
Confidence            4566778889988 55667789999999999999974  2 345789999999999999998888764

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=96.93  E-value=0.011  Score=55.58  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=68.5

Q ss_pred             EEEeeeCCCeeecccccCCCcEEEEEeceE-EEEEEeCCCce-e----eecCCCcE--EEeCCCCeEEEEecCCCceEEE
Q 039441          203 LAILEANPSTLVVPHHSDAETILVLLKGKG-VITLVSHERRE-S----FNMEHGDV--ISVPAGTTYYLSNQDNVDRLHV  274 (539)
Q Consensus       203 l~il~l~P~~l~lPh~~dA~~~~yV~~G~g-~i~~v~pg~~~-~----~~v~~GDV--~~iPaG~~h~i~N~g~~e~L~i  274 (539)
                      .+.+-|.++.+-..|-.+|++|.|...|.+ .+.++.+++.. +    -+|..|++  ++||+|+.+...+.++ ..+.|
T Consensus        51 ~IYfLL~~g~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~g-~~~LV  129 (170)
T 1yud_A           51 SIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQD-GFSLV  129 (170)
T ss_dssp             EEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEESCEEECTTCEEEEEESSS-SEEEE
T ss_pred             EEEEEECCCCCCeeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCceeEEEECCCCEEEEEECCC-CcEEE
Confidence            334445888888888889999999999997 78888887653 2    36889999  9999999999999853 67777


Q ss_pred             EEEeccCCCCCCceec
Q 039441          275 AKLLQPVNTPGQFRVQ  290 (539)
Q Consensus       275 v~l~d~~n~pg~f~~~  290 (539)
                      -++..|+.....|.+.
T Consensus       130 ~C~VaPGF~f~dfel~  145 (170)
T 1yud_A          130 GCMVSPGFTFDDFELF  145 (170)
T ss_dssp             EEEESSCCCGGGCCBC
T ss_pred             EEEECCCccCCceEEc
Confidence            8888877666666653

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=96.91  E-value=0.024  Score=53.20  Aligned_cols=114  Identities=14%  Similarity=0.180  Sum_probs=79.3

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceE-EEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRG-RFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g-~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      ..++.+.-|.+|.....|-+ +|+||-|...|.+ .+.++.+++..                    .-.++-.+|..|++
T Consensus        48 ~~T~IYfLL~~g~~S~~HRv-~sdEiW~~~~G~pL~l~l~~~dg~~--------------------~~~~LG~dv~~Ge~  106 (170)
T 1yud_A           48 LWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGEL--------------------TTAQLGLDLAAGER  106 (170)
T ss_dssp             SCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCE--------------------EEEEESSCTTTTEE
T ss_pred             cceEEEEEECCCCCCeeEEc-CCCEEEEEEcCCCEEEEEEcCCCCE--------------------EEEEeCCCcccCce
Confidence            36778888999998888876 7999999999996 88899998631                    00234456889999


Q ss_pred             --EEeCCCCeEEEEcCCCCcEEEEEEeecCCCCc-cccccccchhcccCcHHHHHHHcCCCHHHHHHhh
Q 039441          436 --FIIPPGHPIALVASPNEKLLTVGFSLNARNNQ-RNFLAGKINIMNQVERETMEVAFNVPARLIERVF  501 (539)
Q Consensus       436 --~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~-~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~  501 (539)
                        +|||+|..+...+.+. +..+|+-.+.+-+.- .+-|         ++++.|.+.|---.+.|.+|-
T Consensus       107 pQ~vVP~G~wqaa~~~~g-~~~LV~C~VaPGF~f~dfel---------~~~~~L~~~~P~~~~~I~~lt  165 (170)
T 1yud_A          107 PQFLVPKGCIFGSAMNQD-GFSLVGCMVSPGFTFDDFEL---------FSQEALLAMYPQHKAVVQKLS  165 (170)
T ss_dssp             SCEEECTTCEEEEEESSS-SEEEEEEEESSCCCGGGCCB---------CBHHHHHHSCCTTHHHHTTSC
T ss_pred             eEEEECCCCEEEEEECCC-CcEEEEEEECCCccCCceEE---------cCHHHHHhHCchhHHHHHHhh
Confidence              9999999999988732 455554455542211 1122         356666666766566666654

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=96.72  E-value=0.045  Score=58.50  Aligned_cols=64  Identities=23%  Similarity=0.492  Sum_probs=43.4

Q ss_pred             eeEEEEEEc--CCc-eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          358 AGVTYVEIN--QGG-MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       358 isva~v~L~--pGg-m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      +++.++++.  +++ ...  .......|++|++|+|.+..  .++                        ..-...|++||
T Consensus       357 F~v~~~~~~~~~~~~~~~--~~~~~~~illv~~G~g~i~~--~~~------------------------~~~~~~l~~G~  408 (440)
T 1pmi_A          357 FSVLQTIFDKSKGGKQVI--EGLNGPSIVIATNGKGTIQI--TGD------------------------DSTKQKIDTGY  408 (440)
T ss_dssp             CEEEEEECCTTTCCEEEE--CCCSSCEEEEEEESEEEEEE--TTC------------------------GGGCEEEETTC
T ss_pred             EEEEEEEecCCCCceeEE--ecCCCcEEEEEEeCeEEEEe--CCc------------------------ccceEEeccCC
Confidence            677778887  443 222  23367899999999999865  111                        00003689999


Q ss_pred             EEEeCCCCeEEEEcC
Q 039441          435 VFIIPPGHPIALVAS  449 (539)
Q Consensus       435 V~vVPaG~~h~i~n~  449 (539)
                      +|+||++..+.+.+.
T Consensus       409 ~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          409 VFFVAPGSSIELTAD  423 (440)
T ss_dssp             EEEECTTCCEEEEEC
T ss_pred             EEEEeCCCcEEEEEe
Confidence            999999976666664

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=96.69  E-value=0.0075  Score=56.77  Aligned_cols=68  Identities=13%  Similarity=0.128  Sum_probs=48.7

Q ss_pred             CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441          367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL  446 (539)
Q Consensus       367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i  446 (539)
                      ||.-+-=|+| ...++.||++|...+.+.+.+.+.                   .  +..+..|++||+|++|+|.+|.-
T Consensus        43 Pn~r~D~H~~-~~eE~Fy~lkG~m~l~v~d~g~~~-------------------~--~~~dv~i~eGdmfllP~gvpHsP  100 (176)
T 1zvf_A           43 PNERTDYHIN-PTPEWFYQKKGSMLLKVVDETDAE-------------------P--KFIDIIINEGDSYLLPGNVPHSP  100 (176)
T ss_dssp             SBCCSCEEEC-SSCEEEEEEESCEEEEEEECSSSS-------------------C--EEEEEEECTTEEEEECTTCCEEE
T ss_pred             CCcCCcCcCC-CCceEEEEEeCEEEEEEEcCCCcc-------------------c--ceeeEEECCCCEEEcCCCCCcCC
Confidence            4454445543 689999999999999999853111                   0  13456899999999999999998


Q ss_pred             EcCCCCcEEEE
Q 039441          447 VASPNEKLLTV  457 (539)
Q Consensus       447 ~n~gne~l~~v  457 (539)
                      .+.. +...+|
T Consensus       101 ~r~~-e~v~lv  110 (176)
T 1zvf_A          101 VRFA-DTVGIV  110 (176)
T ss_dssp             EECT-TCEEEE
T ss_pred             cccC-CcEEEE
Confidence            7763 334433

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=96.67  E-value=0.0082  Score=64.20  Aligned_cols=162  Identities=16%  Similarity=0.212  Sum_probs=90.0

Q ss_pred             ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccC-CC-------------
Q 039441          218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV-NT-------------  283 (539)
Q Consensus       218 ~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~-n~-------------  283 (539)
                      -+|.++++|+.+|++.|....    =...|++||+++||.|+.|.+.=.+ ..+..|+=++... ..             
T Consensus       175 NaDGD~Livpq~G~l~i~TEf----G~L~v~pgei~VIPRGi~frv~l~~-p~Rgyi~E~~g~~f~LP~lGpiGanglan  249 (471)
T 1eyb_A          175 NSDGDFLIVPQKGNLLIYTEF----GKMLVQPNEICVIQRGMRFSIDVFE-ETRGYILEVYGVHFELPDLGPIGANGLAN  249 (471)
T ss_dssp             ESSEEEEEEEEESCEEEEETT----EEEEECTTEEEEECTTCCEEEECSS-SEEEEEEEEESCCEECCCCGGGTTSCBSC
T ss_pred             cCCCCEEEEEEeCCEEEEEec----ccEEeccCCEEEECCccEEEEeeCC-CceEEEEEccCCccccccccccccCCccC
Confidence            378899999999999887522    1467999999999999999987665 4445455444421 11             


Q ss_pred             CCCcee-----c--ccc--CccEEEcChhhhhhcC----ccccccCCCCCCCCcceecCCCCCcccCCCceEEEeCCccc
Q 039441          284 PGQFRV-----Q--QRQ--QGTIKRASQEQLKALS----HHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDY  350 (539)
Q Consensus       284 pg~f~~-----~--~q~--~G~Ivrv~~eql~~l~----~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~f  350 (539)
                      |..|..     .  ..+  --+|+|.... +....    |-.-- .|.+.-.++.|||..-.|+-+..   .--.++.-|
T Consensus       250 ~RDF~~PvA~~ed~~~~~~~~vv~K~~G~-l~~~~~~hsPfDVV-aWhGn~~PYkydl~~F~pI~svs---~dH~dPSIf  324 (471)
T 1eyb_A          250 PRDFLIPIAWYEDRQVPGGYTVINKYQGK-LFAAKQDVSPFNVV-AWHGNYTPYKYNLKNFMVINSVA---FDHADPSIF  324 (471)
T ss_dssp             GGGEEEECCCCCCCEEEEEEEEEEEETTE-EEEEEEEECSCCEE-EEEESCCCEEEEGGGCBCCCCSS---SSCCCGGGG
T ss_pred             hhhccCccccccccCCCccEEEEEEeCCe-eEEEecCCCCceEE-eEcCcccCeEechHHcccccccc---cccCCCCcc
Confidence            222322     0  011  1245555322 32221    11001 12233467788887655543310   011122222


Q ss_pred             ccccc----cceeEE-------EEEEcCCceecceecCCC-CEEEEEEece
Q 039441          351 QQLQE----IDAGVT-------YVEINQGGMMVPHYNSKA-TTIVLVVEGR  389 (539)
Q Consensus       351 P~L~~----l~isva-------~v~L~pGgm~~PHwhpnA-~ei~yV~~G~  389 (539)
                      -.|..    -|+.+.       +-...++++..|.||.|. .|+++.+.|.
T Consensus       325 tVltaps~~pg~av~dFViFpPRw~v~e~TfrpPyyHrNv~SEfmgli~G~  375 (471)
T 1eyb_A          325 TVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGH  375 (471)
T ss_dssp             EEEEEECSSTTCEEEEEEEECSEEECCSSSCCSCCCBCCSCEEEEEECCC-
T ss_pred             eEEEccCCCCCceEEeEeecCCccCCCCCccCCCCCccchhhhhhhhcccc
Confidence            22222    123322       225789999999999984 5699999987

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=96.62  E-value=0.014  Score=51.50  Aligned_cols=69  Identities=17%  Similarity=0.211  Sum_probs=50.4

Q ss_pred             eeEEEEEEcCCceecceecCCCC-EEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKAT-TIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~-ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +.+..=..+||.+...+   ..+ |++|||+|++.++.-  +|.                        .  .+|++||++
T Consensus        42 ~~~GvWe~tPG~~~~~~---~~~~E~~~iLeG~~~lt~d--dG~------------------------~--~~l~aGD~~   90 (116)
T 3es4_A           42 TIVAVWMAEPGIYNYAG---RDLEETFVVVEGEALYSQA--DAD------------------------P--VKIGPGSIV   90 (116)
T ss_dssp             CEEEEEEECSEEEEECC---CSEEEEEEEEECCEEEEET--TCC------------------------C--EEECTTEEE
T ss_pred             EEEEEEecCCceeECee---CCCcEEEEEEEeEEEEEeC--CCe------------------------E--EEECCCCEE
Confidence            45556689999886433   444 999999999999764  331                        1  469999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEE
Q 039441          437 IIPPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F  459 (539)
                      +||+|+.-.+.-.  +.+.=+.|
T Consensus        91 ~~P~G~~gtWev~--e~vrK~~~  111 (116)
T 3es4_A           91 SIAKGVPSRLEIL--SSFRKLAT  111 (116)
T ss_dssp             EECTTCCEEEEEC--SCEEEEEE
T ss_pred             EECCCCeEEEEEe--EEEeEEEE
Confidence            9999999888665  34544444

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=96.58  E-value=0.015  Score=56.20  Aligned_cols=83  Identities=12%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEec--CCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGG--PLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~--p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      .+.+..+...||.-..+|-|.+ ..+++|++|....++..  +++..        -            -..-...|.+|+
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~g~~--------l------------~~~~~~~l~~G~  136 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRP--------V------------LHGEPTRLEPGH  136 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCE--------E------------ECSCCEEECTTC
T ss_pred             CEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCCCcc--------c------------cccceEEeCCCC
Confidence            4788899999999999999986 89999999999999865  22210        0            000135699999


Q ss_pred             EEEeCC--CCeEEEEcC-CCCcEEEEEEe
Q 039441          435 VFIIPP--GHPIALVAS-PNEKLLTVGFS  460 (539)
Q Consensus       435 V~vVPa--G~~h~i~n~-gne~l~~v~F~  460 (539)
                      |++|+.  |..|-+.|. ++++...|-+.
T Consensus       137 v~~~~~~~g~iH~V~N~~~~~~avsLHvY  165 (208)
T 2gm6_A          137 VEAVSPTVGDIHRVHNAYDDRVSISIHVY  165 (208)
T ss_dssp             EEEEBTTTBCCEEEEESCSSSCEEEEEEE
T ss_pred             EEEECCCCCCeEEeccCCCCCcEEEEEEE
Confidence            999999  999999987 67777777544

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=96.50  E-value=0.036  Score=50.39  Aligned_cols=100  Identities=12%  Similarity=0.090  Sum_probs=71.4

Q ss_pred             eeEecCCceEEEeeccCcccccccCcceeeEEEeee-CCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCC
Q 039441          173 YRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEA-NPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHG  250 (539)
Q Consensus       173 ~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l-~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~G  250 (539)
                      +.+..+-|.+.+++.++.-.  |   ...|+..+.- .|+..+=+| |....+++++++|+..|.+-+.....++.|...
T Consensus        11 ~~i~D~RG~L~~~e~~~~ip--f---~ikRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~   85 (141)
T 2pa7_A           11 KKIIDSRGSLVAIEENKNIP--F---SIKRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSP   85 (141)
T ss_dssp             CEEEETTEEEEEEETTTTSS--S---CCCEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCT
T ss_pred             CcEecCCCcEEEEeccCCCC--C---CccEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCC
Confidence            45677889998877633211  2   2345555443 588899999 888999999999999999944334556777555


Q ss_pred             c-EEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          251 D-VISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       251 D-V~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      + .+.||+|+.|-+.|.+++  .+++.+.+
T Consensus        86 ~~gL~IppgvWh~~~~~s~~--avllvlas  113 (141)
T 2pa7_A           86 AVGLYVGPAVWHEMHDFSSD--CVMMVLAS  113 (141)
T ss_dssp             TEEEEECTTCEEEEECCCTT--CEEEEEES
T ss_pred             CcEEEeCCCEEEEEEEcCCC--eEEEEECC
Confidence            4 499999999999999753  44455544

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=96.44  E-value=0.12  Score=51.93  Aligned_cols=183  Identities=15%  Similarity=0.184  Sum_probs=109.0

Q ss_pred             CCCeeeccc-ccCCCcEEEEEeceEEEEEEeCC-CceeeecCCCcEEEeCCCC--eEEEEecCCCceEEEEEEeccCCCC
Q 039441          209 NPSTLVVPH-HSDAETILVLLKGKGVITLVSHE-RRESFNMEHGDVISVPAGT--TYYLSNQDNVDRLHVAKLLQPVNTP  284 (539)
Q Consensus       209 ~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg-~~~~~~v~~GDV~~iPaG~--~h~i~N~g~~e~L~iv~l~d~~n~p  284 (539)
                      .|++=+-|| |.+-+-|.||++|..    .+.+ .-..-.|++|||-.+-||.  .|.=.|.. +..++.+-|.-     
T Consensus        47 ~~~~gf~~HPHrg~EtVTyvl~G~~----~H~DS~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~-~~~~~~lQlWv-----  116 (277)
T 2p17_A           47 FERGTFDVHPHRGIETVTYVISGEL----EHFDSKAGHSTLGPGDVQWMTAGRGVVHKEDPAS-GSTVHSLQLWV-----  116 (277)
T ss_dssp             ECTTCCCCEEECSEEEEEEEEESCE----EEEETTTEEEEECTTCEEEEECTTCEEEEEEECT-TCCEEEEEEEE-----
T ss_pred             CCCCCCCCCCCCCcEEEEEEEEeEE----EEeeCCCCceEECCCeEEEEeCCCCEEEEeecCC-CCCEEEEEEEe-----
Confidence            455545566 899999999999983    2222 1245679999999999865  68888875 46666544332     


Q ss_pred             CCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcce-ecCC-CCCcccCCCceEEEeC----Ccccccccccce
Q 039441          285 GQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPF-NLLS-RKPIYNNNFGRFFEAT----PKDYQQLQEIDA  358 (539)
Q Consensus       285 g~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~f-nl~~-~~p~~sn~~G~i~~~~----~~~fP~L~~l~i  358 (539)
                                    .++.. .+...|              .| .+.. .-|.+...++.+..+-    ..+-|.--..++
T Consensus       117 --------------nLP~~-~k~~~P--------------~y~~~~~~~ip~~~~~g~~~rviaG~~~g~~~p~~~~~~~  167 (277)
T 2p17_A          117 --------------NLPSA-YKMTEP--------------RYQNLRSKDMPVRKEEGATIRVFSGSSKGVKAPTKNIVPV  167 (277)
T ss_dssp             --------------ECCGG-GTTCCC--------------EEEEECGGGSCEEEETTEEEEEEESEETTEECCCCCSSCE
T ss_pred             --------------eCChh-hcCCCC--------------cceeeccccCCeeeeCCeEEEEEEcCccCCCCceecCCCC
Confidence                          12211 011111              11 1111 1122222233333322    112233234468


Q ss_pred             eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441          359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII  438 (539)
Q Consensus       359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV  438 (539)
                      .+..+.|.+|+-+.-...+.-.-++||++|.+.+   +  +.                          ...|.+||.+++
T Consensus       168 ~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v---~--g~--------------------------~~~l~~~d~~~~  216 (277)
T 2p17_A          168 TMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVF---G--AD--------------------------NIEGKAGQALFF  216 (277)
T ss_dssp             EEEEEEECTTCEEEEEEETTCEEEEEEEESEEEE---T--TT--------------------------TEEEETTEEEEE
T ss_pred             EEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEE---C--CC--------------------------ceEeCCCcEEEE
Confidence            8889999999988666555567899999999766   1  10                          024889999999


Q ss_pred             CC-C----CeEEEEcCCCCcEEEEEEeecC
Q 039441          439 PP-G----HPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       439 Pa-G----~~h~i~n~gne~l~~v~F~~na  463 (539)
                      .. |    -...+.|..  +..+|.|.-.+
T Consensus       217 ~~~~~~~~~~l~l~a~~--~a~~Ll~~G~P  244 (277)
T 2p17_A          217 SRHNRGEETELNVTARE--KLRLLLYAGEP  244 (277)
T ss_dssp             CCCCTTCEEEEEEEESS--SEEEEEEEECC
T ss_pred             cCCCCCccceEEEEeCC--CcEEEEEeccc
Confidence            86 7    666677753  46666655443

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=96.42  E-value=0.0095  Score=59.95  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=44.7

Q ss_pred             ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCC
Q 039441          371 MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASP  450 (539)
Q Consensus       371 ~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~g  450 (539)
                      .-=| |....|+.|+++|...+.|++.+                         +.-+-.|++|++|++|+|.+|.=.+..
T Consensus        44 ~d~H-~~~~dE~FyqlkG~m~l~~~d~g-------------------------~~~~V~i~eGemfllP~gv~HsP~r~~   97 (286)
T 2qnk_A           44 KDYH-IEEGEEVFYQLEGDMVLRVLEQG-------------------------KHRDVVIRQGEIFLLPARVPHSPQRFA   97 (286)
T ss_dssp             CCEE-ECSSCEEEEEEESCEEEEEEETT-------------------------EEEEEEECTTEEEEECTTCCEEEEECT
T ss_pred             ccCc-CCCCCeEEEEEeCeEEEEEEeCC-------------------------ceeeEEECCCeEEEeCCCCCcCCcccC
Confidence            5446 55789999999999999999853                         233468999999999999999988864

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=96.40  E-value=0.047  Score=49.65  Aligned_cols=101  Identities=12%  Similarity=0.082  Sum_probs=67.8

Q ss_pred             cccCCCceEEEeCC-cccccccccceeEEEEE-EcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhh
Q 039441          334 IYNNNFGRFFEATP-KDYQQLQEIDAGVTYVE-INQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQ  411 (539)
Q Consensus       334 ~~sn~~G~i~~~~~-~~fP~L~~l~isva~v~-L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~  411 (539)
                      .+...-|.+..+.. .+.|. . . -.+..+. +.||..+.+|.|...++++++++|+..|.+-+...            
T Consensus        12 ~i~D~RG~L~~~e~~~~ipf-~-i-kRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~------------   76 (141)
T 2pa7_A           12 KIIDSRGSLVAIEENKNIPF-S-I-KRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNI------------   76 (141)
T ss_dssp             EEEETTEEEEEEETTTTSSS-C-C-CEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSC------------
T ss_pred             cEecCCCcEEEEeccCCCCC-C-c-cEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcE------------
Confidence            34445677777765 34443 1 1 2333333 44899999999999999999999999998833211            


Q ss_pred             HHHHHHhhhcceeeEEeeeCC-CcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          412 EEEEEEESSRELQKISANLSP-GVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       412 ~~~~~e~~~~~y~~~~~~L~~-GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                                   .-+..|.+ -..+.||+|..|.+.+.+.. .+++.|....
T Consensus        77 -------------~~~~~L~~~~~gL~IppgvWh~~~~~s~~-avllvlas~~  115 (141)
T 2pa7_A           77 -------------IQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVLASDY  115 (141)
T ss_dssp             -------------EEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEEESSC
T ss_pred             -------------EEEEEECCCCcEEEeCCCEEEEEEEcCCC-eEEEEECCCC
Confidence                         22234543 34699999999999998654 6666655443

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=96.38  E-value=0.54  Score=47.46  Aligned_cols=189  Identities=14%  Similarity=0.095  Sum_probs=109.4

Q ss_pred             eCCCeeeccc-ccCCCcEEEEE-eceEEEEEEeCCCceeeecCCCcEEEeCCCC--eEEEEecCCCceEEEEEEeccCCC
Q 039441          208 ANPSTLVVPH-HSDAETILVLL-KGKGVITLVSHERRESFNMEHGDVISVPAGT--TYYLSNQDNVDRLHVAKLLQPVNT  283 (539)
Q Consensus       208 l~P~~l~lPh-~~dA~~~~yV~-~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~--~h~i~N~g~~e~L~iv~l~d~~n~  283 (539)
                      +.|++-+-|| |.+-+-|.||+ +|...--  +. --..-.|++|||-.+-||.  .|.=.|.+ +..++.+-|.-    
T Consensus        47 ~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~--DS-~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~-~~~~~~lQlWv----  118 (290)
T 1j1l_A           47 GGRPGGFPDHPHRGFETVSYLLEGGSMAHE--DF-CGHTGKMNPGDLQWMTAGRGILHAEMPCS-EEPAHGLQLWV----  118 (290)
T ss_dssp             ECTTCBEEEEEEBSEEEEEEECSSSCEEEE--ET-TSCEEEECTTCEEEEECTTCEEEEEEECS-SSCEEEEEEEE----
T ss_pred             cCCCCCCCCCCCCCeEEEEEECcceEEEEe--eC-CCCceEECCCcEEEEeCCCCEEEEeEcCC-CCCEEEEEEEe----
Confidence            3566445666 88888888988 7764321  11 1235679999999998865  57778874 46676555442    


Q ss_pred             CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCccee-cCC-CCCcccCCCceEEEeCCcc----cccccccc
Q 039441          284 PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFN-LLS-RKPIYNNNFGRFFEATPKD----YQQLQEID  357 (539)
Q Consensus       284 pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fn-l~~-~~p~~sn~~G~i~~~~~~~----fP~L~~l~  357 (539)
                                     .++.. .+.+.|              .|. +.. .-|.....+..+..+....    -|.....+
T Consensus       119 ---------------nLP~~-~k~~~P--------------~y~~~~~~~ip~~~~~g~~v~viaG~~~g~~~p~~~~~~  168 (290)
T 1j1l_A          119 ---------------NLRSS-EKMVEP--------------QYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTP  168 (290)
T ss_dssp             ---------------ECCGG-GTTSCC--------------EEEEECGGGSCCCEETTEEEEEEESEETTEECCCCCSSC
T ss_pred             ---------------cCChh-hcCCCC--------------cceecccccCCcEeECCEEEEEEcCCcccCCCceeccCC
Confidence                           12211 011111              111 110 1122222233444443321    23333446


Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      +.+..+.|.+|+-+.....+.-.-++||++|.+.+   ....                          ....+.++.+++
T Consensus       169 ~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v---~g~~--------------------------~~~~~~~~~~~~  219 (290)
T 1j1l_A          169 TLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYI---GPDD--------------------------AQQKIEPHHTAV  219 (290)
T ss_dssp             EEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEE---SCTT--------------------------SCEEECTTEEEE
T ss_pred             cEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEE---CCcc--------------------------cceeccCceEEE
Confidence            88888999999988655555567899999999876   2110                          002366677777


Q ss_pred             eCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          438 IPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       438 VPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ...|-...+.|..+++..+|.|.--+
T Consensus       220 l~~gd~~~i~~~a~~~a~~LLl~G~P  245 (290)
T 1j1l_A          220 LGEGDSVQVENKDPKRSHFVLIAGEP  245 (290)
T ss_dssp             ECSCSEEEEECCSSSCEEEEEEEECC
T ss_pred             ecCCCEEEEEEcCCCCcEEEEEEccc
Confidence            77777777776435567777665443

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=96.37  E-value=0.006  Score=59.62  Aligned_cols=51  Identities=10%  Similarity=0.096  Sum_probs=44.8

Q ss_pred             ecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec
Q 039441          214 VVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       214 ~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~  266 (539)
                      +-+||+|.-+|+||++|+|.  .++..+...+.|.+||++.||+|.+|.+...
T Consensus        22 ~~~~~~~~~~i~~v~~G~~~--~i~~~~~~~~~l~~g~l~~i~p~~~h~~~~~   72 (276)
T 3gbg_A           22 FNNLYINDYKMFWIDSGIAK--LIDKNCLVSYEINSSSIILLKKNSIQRFSLT   72 (276)
T ss_dssp             EEEEECSSCEEEEESSSCEE--EEETTTTEEEEECTTEEEEECTTCEEEEEEE
T ss_pred             ccHhhhcceEEEEEecCceE--EECCccceeEEEcCCCEEEEcCCCceeeccc
Confidence            35789999999999999999  6675555589999999999999999998876

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=96.34  E-value=0.012  Score=57.49  Aligned_cols=66  Identities=14%  Similarity=0.144  Sum_probs=52.6

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +..+.++.+.||+.+.+|.| ...+.+||++|...    +.+                             ..+.+||.+
T Consensus        42 g~~~~lvr~~pG~~~p~H~H-~g~Ee~~VL~G~f~----d~~-----------------------------~~~~~Gd~~   87 (223)
T 3o14_A           42 ARATSIVRYAPGSRFSAHTH-DGGEEFIVLDGVFQ----DEH-----------------------------GDYPAGTYV   87 (223)
T ss_dssp             CEEEEEEEECTTEECCCEEC-TTCEEEEEEEEEEE----ETT-----------------------------EEEETTEEE
T ss_pred             ccEEEEEEECCCCCcccccC-CCCEEEEEEEeEEE----ECC-----------------------------eEECCCeEE
Confidence            34678999999999999999 57899999999964    221                             358999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEE
Q 039441          437 IIPPGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~  458 (539)
                      ++|+|..|...+  ++++.++.
T Consensus        88 ~~P~g~~H~p~a--~~gc~~~v  107 (223)
T 3o14_A           88 RNPPTTSHVPGS--AEGCTIFV  107 (223)
T ss_dssp             EECTTCEECCEE--SSCEEEEE
T ss_pred             EeCCCCccccEe--CCCCEEEE
Confidence            999999998887  34454443

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=96.32  E-value=0.017  Score=59.59  Aligned_cols=96  Identities=16%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             EEEcC-CceecceecCCCCEEEEEEeceEEEEEe-cCCCCc--cc--hhhhhhhhHHHHHHhhhcc------eeeEEeee
Q 039441          363 VEINQ-GGMMVPHYNSKATTIVLVVEGRGRFEMG-GPLSSR--WS--QESQREQQEEEEEEESSRE------LQKISANL  430 (539)
Q Consensus       363 v~L~p-Ggm~~PHwhpnA~ei~yV~~G~g~v~vV-~p~gs~--~s--~~~~~g~~~~~~~e~~~~~------y~~~~~~L  430 (539)
                      +-+.| |+.+.|||. ..+.++..+.|+=++.+. .|....  ..  ..+...- .-.-.......      -..+...|
T Consensus       145 ~~~gp~g~~~~~H~D-~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~L  222 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFD-AYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYY-PDDLQSYWKGDPPKEDLPDAEIVNL  222 (342)
T ss_dssp             EEEECSSCCCCSEEC-SSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----C-CHHHHHHCCSCCCCTTCCSSEEEEE
T ss_pred             EEEeCCCCCCCCeEC-ChhcEEEEEEEEEEEEEecCCccccccCcccccccccc-cccccccchhhccccccCCceEEEE
Confidence            44555 889999997 446888889999999999 665221  00  0000000 00000000000      12456789


Q ss_pred             CCCcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          431 SPGVVFIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       431 ~~GDV~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      .+|||++||+|+.|+..+.+++...-|+|.
T Consensus       223 ~pGD~LyiP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          223 TPGTMLYLPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             CTTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred             CCCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence            999999999999999999854444455554

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=96.31  E-value=0.021  Score=55.67  Aligned_cols=72  Identities=6%  Similarity=0.074  Sum_probs=50.9

Q ss_pred             eeEEEEEEcCCce--ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          358 AGVTYVEINQGGM--MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       358 isva~v~L~pGgm--~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      +-+....|....-  +.+||| +..+|+||++|.|.  .++..+                         .....|.+||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~G~~~--~i~~~~-------------------------~~~~~l~~g~l   58 (276)
T 3gbg_A            7 FQTNVYRMSKFDTYIFNNLYI-NDYKMFWIDSGIAK--LIDKNC-------------------------LVSYEINSSSI   58 (276)
T ss_dssp             EEEEEEEECTTCEEEEEEEEC-SSCEEEEESSSCEE--EEETTT-------------------------TEEEEECTTEE
T ss_pred             hhhhhhhhhcccchhccHhhh-cceEEEEEecCceE--EECCcc-------------------------ceeEEEcCCCE
Confidence            3344555555544  478998 99999999999999  444421                         11367999999


Q ss_pred             EEeCCCCeEEEEcC--CCCcEEEE
Q 039441          436 FIIPPGHPIALVAS--PNEKLLTV  457 (539)
Q Consensus       436 ~vVPaG~~h~i~n~--gne~l~~v  457 (539)
                      ++||+|.+|.+...  .+++...+
T Consensus        59 ~~i~p~~~h~~~~~~~~~~~~~~~   82 (276)
T 3gbg_A           59 ILLKKNSIQRFSLTSLSDENINVS   82 (276)
T ss_dssp             EEECTTCEEEEEEEECCSSCEEEE
T ss_pred             EEEcCCCceeeccccCCCcceEEE
Confidence            99999999998765  33444433

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=96.30  E-value=0.072  Score=50.12  Aligned_cols=106  Identities=10%  Similarity=0.102  Sum_probs=71.4

Q ss_pred             eEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccc-cCCCcEEEEEeceEEEEEEeCCCc-------eee
Q 039441          174 RVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH-SDAETILVLLKGKGVITLVSHERR-------ESF  245 (539)
Q Consensus       174 ~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~-~dA~~~~yV~~G~g~i~~v~pg~~-------~~~  245 (539)
                      ++..+-|.+..  .|..+...+.  ...+.-+....|+.++=.|| ....++++|++|+..+.+++-...       ..+
T Consensus        30 ~~~D~RG~f~e--~~~~~~~~~~--~f~Q~n~s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v  105 (174)
T 3ejk_A           30 QIPAEGGPVLH--MLRLDSPQFS--QFGEIYFSEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQV  105 (174)
T ss_dssp             EECCTTSCEEC--CCCTTCTTCC--CCCEEEEEEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEE
T ss_pred             cEecCCcCEEE--EEecCccCCC--CeeEEEEEECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEE
Confidence            44566677653  4444332221  22333444558999998885 468899999999999999885432       456


Q ss_pred             ecC---CCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCC
Q 039441          246 NME---HGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTP  284 (539)
Q Consensus       246 ~v~---~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~p  284 (539)
                      .|.   ..-.++||+|++|-++|..+ ++.+++.+.+....|
T Consensus       106 ~Ls~~~n~~~L~IP~G~aHgf~~lsd-~~av~ly~~s~~Y~p  146 (174)
T 3ejk_A          106 TLGRPDNYRLLRIPPQVWYGFAATGD-TPALVANCTDIPHRQ  146 (174)
T ss_dssp             EEETTTBCEEEEECTTCEEEEEECTT-SCEEEEEEESSCCCT
T ss_pred             EECCccCceEEEeCCCcEEEEEEccC-CCEEEEEECCCccCC
Confidence            666   56799999999999999974 356666666544333

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=96.30  E-value=0.05  Score=55.68  Aligned_cols=59  Identities=24%  Similarity=0.313  Sum_probs=40.9

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      +++.++.+..+. ..  -...+..|+.|++|+|.+..   ++                        .  ...|++||.|+
T Consensus       251 F~~~~~~~~~~~-~~--~~~~~~~il~v~~G~~~l~~---~~------------------------~--~~~l~~G~~~~  298 (319)
T 1qwr_A          251 FSVYKWDINGEA-EM--AQDESFLICSVIEGSGLLKY---ED------------------------K--TCPLKKGDHFI  298 (319)
T ss_dssp             CEEEEEEEEEEE-EE--CCCSSCEEEEEEEEEEEEEE---TT------------------------E--EEEEETTCEEE
T ss_pred             EEEEEEEECCce-EE--ccCCccEEEEEEcCeEEEEE---CC------------------------E--EEEEcCCcEEE
Confidence            566677776442 21  22367899999999998865   22                        1  24799999999


Q ss_pred             eCCCCeEEEEc
Q 039441          438 IPPGHPIALVA  448 (539)
Q Consensus       438 VPaG~~h~i~n  448 (539)
                      ||++..-+.+.
T Consensus       299 vpa~~~~~~i~  309 (319)
T 1qwr_A          299 LPAQMPDFTIK  309 (319)
T ss_dssp             ECTTCCCEEEE
T ss_pred             EeCCCceEEEE
Confidence            99987544443

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=96.30  E-value=0.0072  Score=55.87  Aligned_cols=76  Identities=7%  Similarity=-0.062  Sum_probs=55.1

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .+..+.++.+.||+.+.+|||| ..+.+|||+|.....    .|.                      |. -+..+.+|+.
T Consensus        44 ~g~~t~lvr~~pG~~~p~H~H~-g~ee~~VL~G~~~~~----~Gd----------------------~~-~~~~~~aGsY   95 (153)
T 3bal_A           44 TSSWTAIFNCPAGSSFASHIHA-GPGEYFLTKGKMEVR----GGE----------------------QE-GGSTAYAPSY   95 (153)
T ss_dssp             TTEEEEEEEECTTEEECCEEES-SCEEEEEEESEEEET----TCG----------------------GG-TSEEEESSEE
T ss_pred             cceEEEEEEeCCCCCccCccCC-CCEEEEEEEEEEEec----Ccc----------------------cc-CccccCCCeE
Confidence            3578889999999999999995 668899999998662    220                      00 1345789999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      ++-|+|..|+.....+ +.+++.+.
T Consensus        96 v~ePpGs~H~p~~~~~-~~~~~~~~  119 (153)
T 3bal_A           96 GFESSGALHGKTFFPV-ESQFYMTF  119 (153)
T ss_dssp             EEECTTCEESCCEESS-CEEEEEEE
T ss_pred             EEcCCCCcccceeCCC-CeEEEEEE
Confidence            9999999998654423 34444333

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=96.16  E-value=0.036  Score=56.27  Aligned_cols=57  Identities=18%  Similarity=0.216  Sum_probs=39.4

Q ss_pred             eeEEEEEEcCCceecceecCCCC-EEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKAT-TIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~-ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +++.++.+.. ....  -. .+. .|+.|++| |.+..   ++                        ..  ..|++|+++
T Consensus       230 F~v~~~~~~~-~~~~--~~-~~~~~il~v~~G-~~i~~---~~------------------------~~--~~l~~G~~~  275 (300)
T 1zx5_A          230 FGLEVVDVTG-TAEI--KT-GGVMNILYAAEG-YFILR---GK------------------------ET--ADLHRGYSC  275 (300)
T ss_dssp             EEEEEEEEEE-EEEE--EC-CSBCEEEEEEES-CEEEE---SS------------------------SE--EEECTTCEE
T ss_pred             EEEEEEEECC-ceEE--ec-CCceEEEEEccc-EEEEe---CC------------------------eE--EEEccceEE
Confidence            5666777764 3222  23 667 89999999 88765   22                        12  369999999


Q ss_pred             EeCCCCeEEEEc
Q 039441          437 IIPPGHPIALVA  448 (539)
Q Consensus       437 vVPaG~~h~i~n  448 (539)
                      +||++..-+.+.
T Consensus       276 ~ipa~~~~~~i~  287 (300)
T 1zx5_A          276 LVPASTDSFTVE  287 (300)
T ss_dssp             EECTTCCEEEEE
T ss_pred             EEeCCCceEEEE
Confidence            999998655554

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=96.12  E-value=0.041  Score=57.98  Aligned_cols=60  Identities=17%  Similarity=0.221  Sum_probs=42.1

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+++.++.|.++..   ++..++..|+.|++|+|.+..  .+                         ..  ..|++||++
T Consensus       323 ~F~v~~~~l~~~~~---~~~~~~~~il~v~~G~~~l~~--~~-------------------------~~--~~l~~G~~~  370 (394)
T 2wfp_A          323 DFAFSLHDLALQET---SIGQHSAAILFCVEGEAVLRK--DE-------------------------QR--LVLKPGESA  370 (394)
T ss_dssp             SCEEEEEECCSSCE---EECCSSCEEEEEEEEEEEEEE--TT-------------------------EE--EEECTTCEE
T ss_pred             EEEEEEEEEcCCeE---EecCCCcEEEEEEeceEEEEE--CC-------------------------eE--EEEccCcEE
Confidence            36777788876533   334467899999999998654  21                         12  479999999


Q ss_pred             EeCCCCeEEEEc
Q 039441          437 IIPPGHPIALVA  448 (539)
Q Consensus       437 vVPaG~~h~i~n  448 (539)
                      +||++..-+.+.
T Consensus       371 fvpa~~~~~~i~  382 (394)
T 2wfp_A          371 FIGADESPVNAS  382 (394)
T ss_dssp             EECGGGCCEEEE
T ss_pred             EEeCCCceEEEE
Confidence            999986444443

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=95.92  E-value=0.035  Score=52.48  Aligned_cols=87  Identities=21%  Similarity=0.189  Sum_probs=50.9

Q ss_pred             EEEcC-CceecceecCCCCEEEEEEeceEEEEEecCCCCc-----cchhhhhhhh--HHH-HHHh--hhcceeeEEeeeC
Q 039441          363 VEINQ-GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR-----WSQESQREQQ--EEE-EEEE--SSRELQKISANLS  431 (539)
Q Consensus       363 v~L~p-Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~-----~s~~~~~g~~--~~~-~~e~--~~~~y~~~~~~L~  431 (539)
                      +-|.+ |+...+|+.+ .+.++.++.|+=++.++.|....     ..........  -.. .-+.  .-..-+.+...|+
T Consensus       128 ~wiG~~gs~t~~H~D~-~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~  206 (235)
T 4gjz_A          128 AWFGPQGTISPLHQDP-QQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILS  206 (235)
T ss_dssp             EEEECTTCEEEEECCS-SEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEEC
T ss_pred             EEEeCCCCCceeeecc-ccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEEC
Confidence            33444 4555567765 46788999999999999885321     0000000000  000 0000  0001134567899


Q ss_pred             CCcEEEeCCCCeEEEEcCC
Q 039441          432 PGVVFIIPPGHPIALVASP  450 (539)
Q Consensus       432 ~GDV~vVPaG~~h~i~n~g  450 (539)
                      +||+++||+|+.|++.|.+
T Consensus       207 pGD~LyiP~gW~H~V~~l~  225 (235)
T 4gjz_A          207 PGEILFIPVKYWHYVRALD  225 (235)
T ss_dssp             TTCEEEECTTCEEEEEESS
T ss_pred             CCCEEEeCCCCcEEEEECC
Confidence            9999999999999999984

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=95.91  E-value=0.047  Score=52.59  Aligned_cols=80  Identities=14%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEe--CCC-c----eeeecCCCcEEEeCC--CCeEEEEecCCCc
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVS--HER-R----ESFNMEHGDVISVPA--GTTYYLSNQDNVD  270 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~--pg~-~----~~~~v~~GDV~~iPa--G~~h~i~N~g~~e  270 (539)
                      .+-+.+|...|+...-+|-|....+++|++|....++-.  +++ .    ....+.+||+++|++  |.+|-+.|...++
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~~  157 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDR  157 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             CEEEEEEEeCCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCCC
Confidence            345677788999999999555699999999999888754  222 1    367899999999999  9999999984456


Q ss_pred             eEEEEEEec
Q 039441          271 RLHVAKLLQ  279 (539)
Q Consensus       271 ~L~iv~l~d  279 (539)
                      ..+.|-++-
T Consensus       158 ~avsLHvY~  166 (208)
T 2gm6_A          158 VSISIHVYG  166 (208)
T ss_dssp             CEEEEEEES
T ss_pred             cEEEEEEEc
Confidence            565555443

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=95.91  E-value=0.015  Score=54.98  Aligned_cols=60  Identities=25%  Similarity=0.401  Sum_probs=46.0

Q ss_pred             CCCeeecccccC-CCcEEEEEeceEEEEEEeCCCc-----------------------------------eeeecCCCcE
Q 039441          209 NPSTLVVPHHSD-AETILVLLKGKGVITLVSHERR-----------------------------------ESFNMEHGDV  252 (539)
Q Consensus       209 ~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~~-----------------------------------~~~~v~~GDV  252 (539)
                      -|.+-..|.|.| .+-|+.++.|+=+..+..|...                                   ....|++||+
T Consensus       131 G~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~  210 (235)
T 4gjz_A          131 GPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEI  210 (235)
T ss_dssp             ECTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTCE
T ss_pred             eCCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCCE
Confidence            555544554444 5778889999999999887531                                   1246899999


Q ss_pred             EEeCCCCeEEEEecCC
Q 039441          253 ISVPAGTTYYLSNQDN  268 (539)
Q Consensus       253 ~~iPaG~~h~i~N~g~  268 (539)
                      ++||+|..|++.|.+.
T Consensus       211 LyiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          211 LFIPVKYWHYVRALDL  226 (235)
T ss_dssp             EEECTTCEEEEEESSS
T ss_pred             EEeCCCCcEEEEECCC
Confidence            9999999999999973

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=95.74  E-value=0.12  Score=49.44  Aligned_cols=87  Identities=8%  Similarity=-0.007  Sum_probs=65.8

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecC-CCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP-LSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p-~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .+++..+...||.-..+|=|.++.-+++|++|....++..- ....                  ..--..-...|.+|||
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~------------------~~l~~~~~~~l~~G~v  130 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKS------------------NEMIKKSERTLRENQC  130 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSC------------------CCCCEEEEEEECTTCE
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCc------------------ccccccceEEeCCCCE
Confidence            37788899999999999999889999999999999998663 2110                  0000123467999999


Q ss_pred             EEe-CCCCeEEEEcCC-CCcEEEEEEee
Q 039441          436 FII-PPGHPIALVASP-NEKLLTVGFSL  461 (539)
Q Consensus       436 ~vV-PaG~~h~i~n~g-ne~l~~v~F~~  461 (539)
                      .++ |.+..|.+.|.+ ++..+-|-+..
T Consensus       131 ~~~~~~~giH~V~N~s~~~~avSlHvY~  158 (200)
T 3eln_A          131 AYINDSIGLHRVENVSHTEPAVSLHLYS  158 (200)
T ss_dssp             EEECTTTCEEEEECCCSSCCEEEEEEEE
T ss_pred             EEecCCCcEEEEECCCCCCCEEEEEeCC
Confidence            999 889999999987 56666554443

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=95.67  E-value=0.07  Score=51.15  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=60.0

Q ss_pred             ceeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEe-CCC-------ceeeecCCCcEEEe-CCCCeEEEEecCC
Q 039441          199 DNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVS-HER-------RESFNMEHGDVISV-PAGTTYYLSNQDN  268 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~-pg~-------~~~~~v~~GDV~~i-PaG~~h~i~N~g~  268 (539)
                      ..+.|.+|...|+..--+| |.++-.+++|++|.-+.+... ++.       .....+.+|||.+| |++-+|.+.|.+.
T Consensus        68 ~~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~  147 (200)
T 3eln_A           68 GKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSH  147 (200)
T ss_dssp             GTCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCS
T ss_pred             CceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCC
Confidence            3466778888999999999 777999999999999888755 222       12578999999999 8888999999874


Q ss_pred             CceEE
Q 039441          269 VDRLH  273 (539)
Q Consensus       269 ~e~L~  273 (539)
                      ++..+
T Consensus       148 ~~~av  152 (200)
T 3eln_A          148 TEPAV  152 (200)
T ss_dssp             SCCEE
T ss_pred             CCCEE
Confidence            45544

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=95.52  E-value=0.087  Score=56.33  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=52.3

Q ss_pred             EEEEcCCceec--ceecCCCCEEEEEEeceEEEEEecCCCCc--cchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          362 YVEINQGGMMV--PHYNSKATTIVLVVEGRGRFEMGGPLSSR--WSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       362 ~v~L~pGgm~~--PHwhpnA~ei~yV~~G~g~v~vV~p~gs~--~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      .+-+.|+|-..  |||. ..+.+++.+.|+=++.+..|..+-  .++-.   -     +....  -..++..|.+|||++
T Consensus       142 n~y~~~~g~~g~~~H~D-~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d---~-----~~~~~--~~~~~~~L~pGD~LY  210 (442)
T 2xdv_A          142 NVYITPAGSQGLPPHYD-DVEVFILQLEGEKHWRLYHPTVPLAREYSVE---A-----EERIG--RPVHEFMLKPGDLLY  210 (442)
T ss_dssp             EEEEECTTCBCSCSEEC-SSEEEEEEEESCEEEEEECCSSTTCSSCEEC---C-----TTTSC--SCSEEEEECTTCEEE
T ss_pred             ceEECCCCCCCccceEC-CcceEEEEEEeEEEEEEccCCCCccccCCCC---c-----hhhcC--CcceEEEECCCcEEE
Confidence            34556666555  9996 567788889999999998886321  00000   0     00000  023567899999999


Q ss_pred             eCCCCeEEEEcCC
Q 039441          438 IPPGHPIALVASP  450 (539)
Q Consensus       438 VPaG~~h~i~n~g  450 (539)
                      ||+|++|+..+.+
T Consensus       211 iP~g~~H~~~s~~  223 (442)
T 2xdv_A          211 FPRGTIHQADTPA  223 (442)
T ss_dssp             ECTTCEEEEECCS
T ss_pred             ECCCceEEEEecC
Confidence            9999999999874

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=95.49  E-value=0.13  Score=48.78  Aligned_cols=75  Identities=17%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             cCCceecceec--CCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeCC
Q 039441          366 NQGGMMVPHYN--SKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIPP  440 (539)
Q Consensus       366 ~pGgm~~PHwh--pnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVPa  440 (539)
                      .+|.++..|||  ..-.++++|++|+...-+|+-.-.+                   +.| +.....|.+  +..++||+
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~S-------------------pTfg~~~~~~Ls~~n~~~L~IP~  116 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNS-------------------DTYGEWTGVRLSDENRREFFIPE  116 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTC-------------------TTTTCEEEEEEETTTCCEEEECT
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCC-------------------CCCCeEEEEEecCCCCCEEEeCC
Confidence            48999999999  6678999999999988788764211                   011 244556754  68999999


Q ss_pred             CCeEEEEcCCCCcEEEEEEe
Q 039441          441 GHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       441 G~~h~i~n~gne~l~~v~F~  460 (539)
                      |++|-+.+.++. ..++.+.
T Consensus       117 G~aHgf~~lsd~-a~~~y~~  135 (185)
T 1ep0_A          117 GFAHGFLALSDE-CIVNYKC  135 (185)
T ss_dssp             TEEEEEEECSSE-EEEEEEE
T ss_pred             CeEEEEEEcCCC-eEEEEec
Confidence            999999998654 5555433

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=95.47  E-value=0.022  Score=52.57  Aligned_cols=64  Identities=13%  Similarity=-0.030  Sum_probs=50.6

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCC-ceeeecCCCcEEEeCCCCeEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHER-RESFNMEHGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~-~~~~~v~~GDV~~iPaG~~h~i~N~  266 (539)
                      ..-..||++.|++.+-+|+|...+.+||++|.-...   .|. +....+.+|+.++-|+|+.|+..-.
T Consensus        45 g~~t~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~---~Gd~~~~~~~~aGsYv~ePpGs~H~p~~~  109 (153)
T 3bal_A           45 SSWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVR---GGEQEGGSTAYAPSYGFESSGALHGKTFF  109 (153)
T ss_dssp             TEEEEEEEECTTEEECCEEESSCEEEEEEESEEEET---TCGGGTSEEEESSEEEEECTTCEESCCEE
T ss_pred             ceEEEEEEeCCCCCccCccCCCCEEEEEEEEEEEec---CccccCccccCCCeEEEcCCCCcccceeC
Confidence            345667788999999999999999999999987542   221 1245678999999999999986543

>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}

Probab=94.34  E-value=0.0028  Score=44.07  Aligned_cols=32  Identities=25%  Similarity=0.857  Sum_probs=27.7

Q ss_pred             CChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Q 039441           45 QDPEEEYKQCKQLCEKQ-------EAVQRRCERHYKEQQ   76 (539)
Q Consensus        45 ~dp~~~~~~c~~~c~~q-------~~c~~~ce~~~~~~~   76 (539)
                      ..|+++|+.|+.-|+--       +.|+..||+.+++++
T Consensus         2 ekpqqeleecqnvcrmkrwstemvhrcekkceekferqq   40 (41)
T 2lqx_A            2 EKPQQELEECQNVCRMKRWSTEMVHRCEKKCEEKFERQQ   40 (41)
Confidence            46999999999999866       489999999998765

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=95.32  E-value=0.09  Score=56.87  Aligned_cols=92  Identities=18%  Similarity=0.285  Sum_probs=57.3

Q ss_pred             EEEEcCCcee--cceecCCCCEEEEEEeceEEEEEecCCCCc----cchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          362 YVEINQGGMM--VPHYNSKATTIVLVVEGRGRFEMGGPLSSR----WSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       362 ~v~L~pGgm~--~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~----~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .+-+.|+|-.  .|||- .-+.+++-+.|+=+..|..|....    ..+.. .=.     ..+..  -..+...|++|||
T Consensus       167 N~Y~tp~Gs~g~~pH~D-~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~-~~~-----~~~~~--~p~~e~~L~pGDv  237 (489)
T 4diq_A          167 NVYLTPPNSQGFAPHYD-DIEAFVLQLEGRKLWRVYRPRAPTEELALTSSP-NFS-----QDDLG--EPVLQTVLEPGDL  237 (489)
T ss_dssp             EEEEECSSBCCSCCBCC-SSEEEEEEEEECEEEEEECCSSGGGTTCSSCCC-CCC-----GGGCC--CCSEEEEECTTCE
T ss_pred             eEEecCCCcccccCccC-CcceEEEEEeeEEEEEEeCCCCccccCCCcccc-cCC-----ccccc--CcceEEEECCCCE
Confidence            4566677754  59997 446677777888899998876321    00000 000     00000  0235678999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      ++||+|++|+..+.++..-.-|.|.+.
T Consensus       238 LYiP~g~~H~~~s~~~~~SlhlTi~~~  264 (489)
T 4diq_A          238 LYFPRGFIHQAECQDGVHSLHLTLSTY  264 (489)
T ss_dssp             EEECTTCEEEEEBCSSCCEEEEEEEEC
T ss_pred             EEECCCCceEEEecCCCceEEEeeccc
Confidence            999999999999986544444455544

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=95.30  E-value=0.15  Score=48.31  Aligned_cols=75  Identities=16%  Similarity=0.067  Sum_probs=55.2

Q ss_pred             cCCceecceec--CCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeCC
Q 039441          366 NQGGMMVPHYN--SKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIPP  440 (539)
Q Consensus       366 ~pGgm~~PHwh--pnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVPa  440 (539)
                      .+|.++..|||  ..-+++++|++|+...-+|+-.-.+                   +.| +.....|.+  +..++||.
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~S-------------------pTfg~~~~~~Ls~~n~~~L~IP~  117 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGS-------------------PTFGQWVGERLSAENKRQMWIPA  117 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTS-------------------TTTTCEEEEEEETTTCCEEEECT
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCC-------------------CCCCeEEEEEeCCCcCCEEEeCC
Confidence            48999999999  6678999999999987777764211                   111 244556654  68999999


Q ss_pred             CCeEEEEcCCCCcEEEEEEe
Q 039441          441 GHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       441 G~~h~i~n~gne~l~~v~F~  460 (539)
                      |++|-+.+.++. ..++.+.
T Consensus       118 G~aHgf~~lsd~-a~~~y~~  136 (184)
T 2ixk_A          118 GFAHGFVVLSEY-AEFLYKT  136 (184)
T ss_dssp             TEEEEEEECSSE-EEEEEEE
T ss_pred             CeEEEEEEcCCC-EEEEEeC
Confidence            999999998654 5555433

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=95.16  E-value=0.25  Score=47.56  Aligned_cols=73  Identities=16%  Similarity=0.100  Sum_probs=54.6

Q ss_pred             cCCceecceecCC---CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeC
Q 039441          366 NQGGMMVPHYNSK---ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIP  439 (539)
Q Consensus       366 ~pGgm~~PHwhpn---A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVP  439 (539)
                      .+|.++..|||..   -+++++|++|+...-+|+-.-.+                   +.| +.....|.+  +..++||
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~S-------------------pTfG~~~~v~Ls~~n~~~L~IP  115 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGS-------------------PTFGQWDSVLMDQQDPRAVYLP  115 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTC-------------------TTTTCEEEEEECSSSCCEEEEC
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCC-------------------CCCCeEEEEEecCCCCCEEEeC
Confidence            5899999999954   58999999999988888874211                   011 245567765  5899999


Q ss_pred             CCCeEEEEcCCCCcEEEEE
Q 039441          440 PGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~  458 (539)
                      .|++|-+.+.++. .+++.
T Consensus       116 ~G~aHgf~~lsd~-a~~~y  133 (205)
T 1oi6_A          116 VGVGHAFVALEDD-TVMSY  133 (205)
T ss_dssp             TTCEEEEEECSTT-EEEEE
T ss_pred             CCeeEEEEEccCC-eEEEE
Confidence            9999999998665 44443

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=95.08  E-value=0.055  Score=55.86  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=58.7

Q ss_pred             EEEc-CCceecceecCCCCEEEEEEeceEEEEEecCCCCc--cch--hh-hhhhhH---HHHHHhhhc---ceeeEEeee
Q 039441          363 VEIN-QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR--WSQ--ES-QREQQE---EEEEEESSR---ELQKISANL  430 (539)
Q Consensus       363 v~L~-pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~--~s~--~~-~~g~~~---~~~~e~~~~---~y~~~~~~L  430 (539)
                      +-|. +|+...+|+.+. +.|..++.|+=++.++.|....  ...  .. ..+...   ....-+.-+   .-..+...|
T Consensus       187 l~iG~~gs~t~~H~D~~-~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l  265 (349)
T 3d8c_A          187 LLIGMEGNVTPAHYGEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV  265 (349)
T ss_dssp             EEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred             EEEECCCCCccceECCh-hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEE
Confidence            4454 667888999866 7899999999999999886311  000  00 000000   000000000   013567889


Q ss_pred             CCCcEEEeCCCCeEEEEcCCCCc-EEEEEEe
Q 039441          431 SPGVVFIIPPGHPIALVASPNEK-LLTVGFS  460 (539)
Q Consensus       431 ~~GDV~vVPaG~~h~i~n~gne~-l~~v~F~  460 (539)
                      ++||+++||+|+.|++.|.++.. -..|.|.
T Consensus       266 ~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w  296 (349)
T 3d8c_A          266 GPGDVLYIPMYWWHHIESLLNGGITITVNFW  296 (349)
T ss_dssp             CTTCEEEECTTCEEEEEECTTSCCEEEEEEE
T ss_pred             CCCCEEEECCCCcEEEEEcCCCCcEEEEEEE
Confidence            99999999999999999986433 3334443

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=95.08  E-value=0.17  Score=48.51  Aligned_cols=73  Identities=7%  Similarity=-0.036  Sum_probs=56.3

Q ss_pred             cCCceecceecCCCCEEEEEEe-ceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeE
Q 039441          366 NQGGMMVPHYNSKATTIVLVVE-GRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI  444 (539)
Q Consensus       366 ~pGgm~~PHwhpnA~ei~yV~~-G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h  444 (539)
                      .+|.++..|+| .-.++++|++ |+...-+|+-. .+..-    |              +.....|..+..++||.|++|
T Consensus        68 ~~GvlRGlH~h-~q~Klv~~~~~G~v~dV~VDlR-~SpTf----g--------------~~~~v~Ls~~~~L~IP~G~aH  127 (197)
T 1nxm_A           68 RKNVLRGLHAE-PWDKYISVADGGKVLGTWVDLR-EGETF----G--------------NTYQTVIDASKSIFVPRGVAN  127 (197)
T ss_dssp             ETTBEEEEEEC-SSCEEEEECSSCCEEEEEEECB-SSTTT----T--------------CEEEEEECTTEEEEECTTEEE
T ss_pred             CCCCcceeeec-ccceEEEEcCCCEEEEEEEECC-CCCCC----C--------------eEEEEEeCCCcEEEeCCCeEE
Confidence            68999999999 5679999999 99988888876 22000    0              245667888999999999999


Q ss_pred             EEEcCCCCcEEEEEE
Q 039441          445 ALVASPNEKLLTVGF  459 (539)
Q Consensus       445 ~i~n~gne~l~~v~F  459 (539)
                      -..+.++. .+++..
T Consensus       128 gf~~lsd~-a~~~y~  141 (197)
T 1nxm_A          128 GFQVLSDF-VAYSYL  141 (197)
T ss_dssp             EEEECSSE-EEEEEE
T ss_pred             EEEeccCC-eEEEEE
Confidence            99998553 555543

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=95.06  E-value=3.3  Score=41.69  Aligned_cols=167  Identities=14%  Similarity=0.172  Sum_probs=87.8

Q ss_pred             cCCCcEEE-EEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC-CCceEEEEEEeccCCCCCCceeccccCcc
Q 039441          219 SDAETILV-LLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD-NVDRLHVAKLLQPVNTPGQFRVQQRQQGT  296 (539)
Q Consensus       219 ~dA~~~~y-V~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g-~~e~L~iv~l~d~~n~pg~f~~~~q~~G~  296 (539)
                      +...|++. .+.|.|.|++  .|  .+|+|..-|.++||.|+..++.... ...+++|+..--+...          .--
T Consensus        76 l~~rE~~iV~l~G~~~V~v--dG--~~f~lg~~dalYVp~g~~~v~~as~da~~~a~fav~sAPa~~----------~~P  141 (282)
T 1xru_A           76 LERRELGVINIGGAGTITV--DG--QCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAHT----------TYP  141 (282)
T ss_dssp             TTTEEEEEEECSSCEEEEE--TT--EEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECSS----------CCC
T ss_pred             cCCcEEEEEEccCeEEEEE--CC--EEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEccccCC----------CCC
Confidence            44445554 5678888887  22  5789999999999999976666533 2234544443333221          000


Q ss_pred             EEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEE-eCCcccccccccceeEEEEEEcCCce---ec
Q 039441          297 IKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFE-ATPKDYQQLQEIDAGVTYVEINQGGM---MV  372 (539)
Q Consensus       297 Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~-~~~~~fP~L~~l~isva~v~L~pGgm---~~  372 (539)
                      ..+++.+++.....       +..             .. ++.-.|.- +.+..+   ....+-+..-.|+|||.   ++
T Consensus       142 ~r~I~~~dv~~~~r-------G~~-------------~~-sn~R~I~~il~~~~~---~~~qllmg~evltpgg~WSSyP  197 (282)
T 1xru_A          142 TKKVTPDEVSPVTL-------GDN-------------LT-SNRRTINKYFVPDVL---ETCQLSMGLTELAPGNLWNTMP  197 (282)
T ss_dssp             CEEECHHHHCCEEE-------CCG-------------GG-TCCEEEEEEESTTTC---CCSSCEEEEEEECTTCCEESCS
T ss_pred             CEEECHHHCCeeec-------cCC-------------CC-CCcEEEEEeeCCCCC---chhhEEEEEEEEeCCCCcCCCC
Confidence            11222222211110       110             00 00111221 121222   33357788888999984   69


Q ss_pred             ceecCCCCEEEEEEe--c-eEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEE
Q 039441          373 PHYNSKATTIVLVVE--G-RGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALV  447 (539)
Q Consensus       373 PHwhpnA~ei~yV~~--G-~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~  447 (539)
                      ||-|=+-.|..|..+  . ...++++....                        ....-.|+-||+++||..|+|.-.
T Consensus       198 pHkHDrr~EeyyYF~l~~~gfv~q~~g~p~------------------------Etrhi~V~n~daVlvP~wh~h~~~  251 (282)
T 1xru_A          198 CHTHERRMEVYFYFNMDDDACVFHMMGQPQ------------------------ETRHIVMHNEQAVISPSWSIHSGV  251 (282)
T ss_dssp             EEECTTEEEEEEEESCCTTCCEEEEEEETT------------------------EEEEEEECSSEEEEECTTCEEEEE
T ss_pred             CccCCCCceEEEEEEeCCCCEEEEEeCCCC------------------------CeeEEEEECCCEEEeCCCCCCCCC
Confidence            999965666666665  1 12333332210                        122236899999999966777744

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=95.04  E-value=0.2  Score=47.97  Aligned_cols=74  Identities=20%  Similarity=0.241  Sum_probs=54.7

Q ss_pred             cCCceecceecCC---CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeC
Q 039441          366 NQGGMMVPHYNSK---ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIP  439 (539)
Q Consensus       366 ~pGgm~~PHwhpn---A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVP  439 (539)
                      .+|.++..|||..   -.++++|++|+...-+|+-.-.+                   +.| +.....|.+  +..++||
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~S-------------------pTfG~~~~v~Ls~en~~~L~IP  133 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSS-------------------PTFGKYVKAELNEENHYMLWIP  133 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTS-------------------TTTTCEEEEEEETTTCCEEEEC
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCC-------------------CCCCeEEEEEecCCCCCEEEeC
Confidence            5899999999954   58999999999988788764211                   011 245566764  7999999


Q ss_pred             CCCeEEEEcCCCCcEEEEEE
Q 039441          440 PGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~F  459 (539)
                      .|++|-+.+.++ +..++.+
T Consensus       134 ~G~aHgf~~lsd-~a~~ly~  152 (196)
T 1wlt_A          134 PGFAHGFQALED-SIVIYFI  152 (196)
T ss_dssp             TTEEEEEEESSS-EEEEEEE
T ss_pred             CCeEEEEEEcCC-CeEEEEE
Confidence            999999999865 4444443

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=95.03  E-value=0.11  Score=53.19  Aligned_cols=87  Identities=16%  Similarity=0.295  Sum_probs=52.5

Q ss_pred             EEEEc-CCceecceecCCCCEEEEEEeceEEEEEecCCCCcc----chhhhhhhhHHHHHHhhhc---ceeeEEeeeCCC
Q 039441          362 YVEIN-QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW----SQESQREQQEEEEEEESSR---ELQKISANLSPG  433 (539)
Q Consensus       362 ~v~L~-pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~----s~~~~~g~~~~~~~e~~~~---~y~~~~~~L~~G  433 (539)
                      .+-|. +|+-..+||.+. +.+..++.|+=++.++.|.....    ...+.. -.-....-+.-+   ....+...|++|
T Consensus       170 ~l~~g~~g~~~~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~-~d~~~~d~~~~p~~~~~~~~~~~L~pG  247 (338)
T 3al5_A          170 VFRISSPGLQLWTHYDVM-DNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEV-LNIDNPDLAKYPLFSKARRYECSLEAG  247 (338)
T ss_dssp             EEEEECTTCEEEEECCSS-EEEEEECSSCEEEEEECGGGGGGGTEETTEESC-CCSSSCCTTTCTTGGGCCEEEEEECTT
T ss_pred             eeEECCCCCCccceECCc-ccEEEEEEEEEEEEEECcccccccccCCCCccc-ccCCCcchhhCcccccCCCEEEEECCC
Confidence            34444 455667799754 67888999999999998853210    000000 000000000000   113567889999


Q ss_pred             cEEEeCCCCeEEEEcCC
Q 039441          434 VVFIIPPGHPIALVASP  450 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~g  450 (539)
                      |+++||+|+.|++.|.+
T Consensus       248 D~LyiP~gWwH~v~~l~  264 (338)
T 3al5_A          248 DVLFIPALWFHNVISEE  264 (338)
T ss_dssp             CEEEECTTCEEEEEESS
T ss_pred             CEEEECCCCeEEEeeCC
Confidence            99999999999999984

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=94.91  E-value=0.15  Score=49.17  Aligned_cols=73  Identities=14%  Similarity=0.125  Sum_probs=54.9

Q ss_pred             cCCceecceecC---CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeC
Q 039441          366 NQGGMMVPHYNS---KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIP  439 (539)
Q Consensus       366 ~pGgm~~PHwhp---nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVP  439 (539)
                      .+|.++..|||.   .-.++++|++|++..-+|+-.-.+                   +.| +.....|.+  +..++||
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~S-------------------pTfg~~~~~~Ls~~n~~~L~IP  138 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDS-------------------PTFKQWRGYILSADNHRQLLVP  138 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTS-------------------TTTTCEEEEEEETTTCCEEEEC
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCC-------------------CCCCeEEEEEecCCCCCEEEeC
Confidence            689999999994   268999999999988888864211                   111 345566764  8999999


Q ss_pred             CCCeEEEEcCCCCcEEEEE
Q 039441          440 PGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~  458 (539)
                      .|++|-+.+.++. ..++.
T Consensus       139 ~G~aHGF~~Lsd~-a~~~Y  156 (205)
T 3ryk_A          139 KGFAHGFCTLVPH-TIVMY  156 (205)
T ss_dssp             TTEEEEEEECSSS-EEEEE
T ss_pred             CCceEEEEEcCCC-EEEEE
Confidence            9999999998654 44443

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=94.91  E-value=0.25  Score=46.76  Aligned_cols=73  Identities=15%  Similarity=0.060  Sum_probs=53.9

Q ss_pred             cCCceecceecC---CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeC
Q 039441          366 NQGGMMVPHYNS---KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIP  439 (539)
Q Consensus       366 ~pGgm~~PHwhp---nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVP  439 (539)
                      .+|.++..|||.   .-.++++|++|+...-+|+-.-.+                   +.| +.....|.+  +..++||
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~S-------------------pTfg~~~~~~Ls~~n~~~L~IP  115 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKES-------------------PTFGQWVGVNLSAENKRQLWIP  115 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTC-------------------TTTTCEEEEEEETTTCCEEEEC
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCC-------------------CCCCeEEEEEecCCCCCEEEeC
Confidence            489999999995   568999999999988788764211                   111 244556654  6899999


Q ss_pred             CCCeEEEEcCCCCcEEEEE
Q 039441          440 PGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~  458 (539)
                      .|++|-+.+.++. ..++.
T Consensus       116 ~G~aHgf~~lsd~-a~~~y  133 (183)
T 1dzr_A          116 EGFAHGFVTLSEY-AEFLY  133 (183)
T ss_dssp             TTEEEEEEECSSE-EEEEE
T ss_pred             CCeEEEEEEcCCC-eEEEE
Confidence            9999999998654 44443

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=94.67  E-value=0.088  Score=54.29  Aligned_cols=64  Identities=17%  Similarity=0.243  Sum_probs=47.8

Q ss_pred             EEeeeCC-CeeecccccCCCcEEEEEeceEEEEEE-eCCC----------------------------------ceeeec
Q 039441          204 AILEANP-STLVVPHHSDAETILVLLKGKGVITLV-SHER----------------------------------RESFNM  247 (539)
Q Consensus       204 ~il~l~P-~~l~lPh~~dA~~~~yV~~G~g~i~~v-~pg~----------------------------------~~~~~v  247 (539)
                      .++-+-| ++.+-|||-..+-++..+.|+=++.+. .|..                                  .....|
T Consensus       143 ~~~~~gp~g~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L  222 (342)
T 1vrb_A          143 AIVYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNL  222 (342)
T ss_dssp             EEEEEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEE
T ss_pred             ceEEEeCCCCCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEE
Confidence            3345566 666667776666677778899888888 5441                                  023578


Q ss_pred             CCCcEEEeCCCCeEEEEecC
Q 039441          248 EHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       248 ~~GDV~~iPaG~~h~i~N~g  267 (539)
                      ++|||++||+|..|+..+.+
T Consensus       223 ~pGD~LyiP~gwwH~v~s~~  242 (342)
T 1vrb_A          223 TPGTMLYLPRGLWHSTKSDQ  242 (342)
T ss_dssp             CTTCEEEECTTCEEEEECSS
T ss_pred             CCCcEEEeCCCccEEEEECC
Confidence            99999999999999999985

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=94.54  E-value=0.41  Score=46.73  Aligned_cols=73  Identities=12%  Similarity=0.023  Sum_probs=53.8

Q ss_pred             cCCceecceecCC---CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeC
Q 039441          366 NQGGMMVPHYNSK---ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIP  439 (539)
Q Consensus       366 ~pGgm~~PHwhpn---A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVP  439 (539)
                      .+|.++..|||..   -+++++|++|+...-+|+-.-.+                   +.| +.....|.+  +..++||
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~S-------------------pTfG~~~~v~Ls~~n~~~L~IP  134 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGS-------------------PTFGRWDSVLLDDQDRRTIYVS  134 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTC-------------------TTTTCEEEEEEETTTCCEEEEC
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCC-------------------CCCCcEEEEEecCCCCcEEEeC
Confidence            5899999999954   48999999999988888764211                   111 245556755  5899999


Q ss_pred             CCCeEEEEcCCCCcEEEEE
Q 039441          440 PGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~  458 (539)
                      .|++|-+.+.++. .+++.
T Consensus       135 ~G~aHgF~~Lsd~-a~vly  152 (225)
T 1upi_A          135 EGLAHGFLALQDN-STVMY  152 (225)
T ss_dssp             TTCEEEEEECSSS-EEEEE
T ss_pred             CCeeEEEEEcCCC-EEEEE
Confidence            9999999998665 44443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=94.44  E-value=0.32  Score=47.21  Aligned_cols=74  Identities=12%  Similarity=-0.051  Sum_probs=53.7

Q ss_pred             cCCceecceecCC---CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCC--CcEEEeCC
Q 039441          366 NQGGMMVPHYNSK---ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSP--GVVFIIPP  440 (539)
Q Consensus       366 ~pGgm~~PHwhpn---A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~--GDV~vVPa  440 (539)
                      .+|.++..|||..   -+++++|++|+...-+|+-.-.+..-    |              +.....|.+  +..++||.
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTf----G--------------~~~~v~Ls~~n~~~L~IP~  124 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTY----G--------------CWEGTRLDDVSRRAVYLSE  124 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTT----T--------------CEEEEEEETTTCCEEEECT
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCC----C--------------eEEEEEecCCCCCEEEeCC
Confidence            4899999999954   58999999999987778764211000    0              245556765  58999999


Q ss_pred             CCeEEEEcCCCCcEEEEE
Q 039441          441 GHPIALVASPNEKLLTVG  458 (539)
Q Consensus       441 G~~h~i~n~gne~l~~v~  458 (539)
                      |++|-+.+.++. .+++.
T Consensus       125 G~aHgF~~Lsd~-a~~ly  141 (216)
T 2c0z_A          125 GIGHGFCAISDE-ATLCY  141 (216)
T ss_dssp             TEEEEEEECSSE-EEEEE
T ss_pred             CeeEEEEEcCCC-eEEEE
Confidence            999999998664 44443

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=94.29  E-value=0.19  Score=51.75  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=54.2

Q ss_pred             CCceecceecCCCC-EEEEEEeceEEEEEecCCCCc-----cchhhhhhhhHHHHHH-------hhh-----cceeeEEe
Q 039441          367 QGGMMVPHYNSKAT-TIVLVVEGRGRFEMGGPLSSR-----WSQESQREQQEEEEEE-------ESS-----RELQKISA  428 (539)
Q Consensus       367 pGgm~~PHwhpnA~-ei~yV~~G~g~v~vV~p~gs~-----~s~~~~~g~~~~~~~e-------~~~-----~~y~~~~~  428 (539)
                      +|+....|+.+..+ .|..++.|+=++.++.|.-+.     ....++  ......-+       ...     ...+.+..
T Consensus       181 ~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~--~~~~~~~~w~~~~~P~~~~~~~p~~~~~~~~  258 (336)
T 3k2o_A          181 PRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGG--NQQDEAITWFNVIYPRTQLPTWPPEFKPLEI  258 (336)
T ss_dssp             TTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHG--GGTTCHHHHHHHTGGGGGSTTSCGGGCCEEE
T ss_pred             CCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccC--CCccchhhhhhhhCcchhhhcccccCceEEE
Confidence            46777889988754 799999999999999997532     000000  00000000       000     01234567


Q ss_pred             eeCCCcEEEeCCCCeEEEEcCCC
Q 039441          429 NLSPGVVFIIPPGHPIALVASPN  451 (539)
Q Consensus       429 ~L~~GDV~vVPaG~~h~i~n~gn  451 (539)
                      .|++||+++||+|+.|++.|.++
T Consensus       259 ~l~pGd~l~iP~gw~H~v~~~~~  281 (336)
T 3k2o_A          259 LQKPGETVFVPGGWWHVVLNLDT  281 (336)
T ss_dssp             EECTTCEEEECTTCEEEEEESSC
T ss_pred             EECCCCEEEeCCCCcEEEecCCC
Confidence            89999999999999999999854

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=94.20  E-value=0.58  Score=44.97  Aligned_cols=74  Identities=11%  Similarity=0.104  Sum_probs=55.2

Q ss_pred             cCCceecceecC---CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeC
Q 039441          366 NQGGMMVPHYNS---KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIP  439 (539)
Q Consensus       366 ~pGgm~~PHwhp---nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVP  439 (539)
                      .+|.++..||+.   .-+++++|++|+...-+|+-.-.+                   +.| +.+...|.+  +..++||
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~S-------------------pTfG~w~~v~Ls~en~~~l~IP  112 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGS-------------------PTFGRWEIVPMDAERNTAVYLT  112 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTC-------------------TTTTCEEEEEEETTTCCEEEEC
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCC-------------------CCCCeEEEEEecCCCCCEEEeC
Confidence            689999999994   468999999999988888874321                   111 234456654  8899999


Q ss_pred             CCCeEEEEcCCCCcEEEEEE
Q 039441          440 PGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~F  459 (539)
                      .|++|-..+.++. ..++-.
T Consensus       113 ~GfaHGF~~Lsd~-a~~~Y~  131 (201)
T 4hn1_A          113 AGLGRAFLSLTDD-ATLVFL  131 (201)
T ss_dssp             TTCEEEEEECSTT-EEEEEE
T ss_pred             CcceEEEeecCCC-eEEEEe
Confidence            9999999998654 555443

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=94.02  E-value=1.8  Score=43.63  Aligned_cols=60  Identities=15%  Similarity=0.074  Sum_probs=39.3

Q ss_pred             cccccCCCcEEE-EEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC-CceEEEEEEe
Q 039441          215 VPHHSDAETILV-LLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN-VDRLHVAKLL  278 (539)
Q Consensus       215 lPh~~dA~~~~y-V~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~-~e~L~iv~l~  278 (539)
                      .+..+..-|++. .+.|.|.|++  .|  .+|+|..-|.++||.|+..++....+ ..+++|+..-
T Consensus        72 ~~~fl~~rE~~iV~lgG~~~V~v--dg--~~f~lg~~dalYVp~G~~~v~~as~d~~~~a~fav~s  133 (289)
T 1ywk_A           72 VDYFLERRELGVINIGGPGFIEI--DG--AKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISC  133 (289)
T ss_dssp             SSSTTTTEEEEEEECSSCEEEEE--TT--EEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEE
T ss_pred             ccccCCCcEEEEEEccCeEEEEE--CC--EEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEc
Confidence            344455566665 4677888877  22  57899999999999998866665422 2345444433

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=93.72  E-value=0.11  Score=44.09  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=29.7

Q ss_pred             eeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccC
Q 039441          244 SFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV  281 (539)
Q Consensus       244 ~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~  281 (539)
                      ...|++|||+.||+|.++.+.+..   .|.+|++-.+.
T Consensus         7 ~~~l~~G~v~vVPq~~~v~~~A~~---~le~v~F~tna   41 (93)
T 1dgw_Y            7 AATLSEGDIIVIPSSFPVALKAAS---DLNMVGIGVNA   41 (93)
T ss_dssp             EEEECTTCEEEECTTCCEEEEESS---SEEEEEEEESC
T ss_pred             hceecCCcEEEECCCCceeEEecC---CeEEEEEEecC
Confidence            568999999999999999999984   39988875544

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=93.58  E-value=0.19  Score=51.80  Aligned_cols=59  Identities=14%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             CCCeeecccccCCCcEEEEEeceEEEEEEeCCCc------------------------------------eeeecCCCcE
Q 039441          209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERR------------------------------------ESFNMEHGDV  252 (539)
Q Consensus       209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~------------------------------------~~~~v~~GDV  252 (539)
                      .+++..-+||-..+-|..++.|+=++.+..|...                                    ....|++||+
T Consensus       191 ~~gs~t~~H~D~~~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~  270 (349)
T 3d8c_A          191 MEGNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDV  270 (349)
T ss_dssp             CTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEECTTCE
T ss_pred             CCCCCccceECChhcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEECCCCE
Confidence            3455655555445678888999999998876521                                    2357899999


Q ss_pred             EEeCCCCeEEEEecC
Q 039441          253 ISVPAGTTYYLSNQD  267 (539)
Q Consensus       253 ~~iPaG~~h~i~N~g  267 (539)
                      ++||+|..|++.|.+
T Consensus       271 LyiP~gWwH~V~~l~  285 (349)
T 3d8c_A          271 LYIPMYWWHHIESLL  285 (349)
T ss_dssp             EEECTTCEEEEEECT
T ss_pred             EEECCCCcEEEEEcC
Confidence            999999999999997

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=93.27  E-value=0.33  Score=52.06  Aligned_cols=89  Identities=17%  Similarity=0.152  Sum_probs=54.2

Q ss_pred             cCCceecceecCCC-CEEEEEEeceEEEEEecCCCCccc-hhh--hhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCC
Q 039441          366 NQGGMMVPHYNSKA-TTIVLVVEGRGRFEMGGPLSSRWS-QES--QREQQEEEEEEESSRELQKISANLSPGVVFIIPPG  441 (539)
Q Consensus       366 ~pGgm~~PHwhpnA-~ei~yV~~G~g~v~vV~p~gs~~s-~~~--~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG  441 (539)
                      .+|+....|+.+.+ +.|..|+.|+=+.-++.|+-.... ...  .-+.+...--.....  +.+...|.+||+++||.|
T Consensus       204 p~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~--~~~~v~l~pGE~LfIPsG  281 (451)
T 2yu1_A          204 VRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVS--DCQRIELKQGYTFVIPSG  281 (451)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSS--CCEEEEECTTCEEEECTT
T ss_pred             cCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccc--cceEEEECCCcEEEeCCC
Confidence            46677777888874 568899999999999999732100 000  000000000000001  234567999999999999


Q ss_pred             CeEEEEcCCCCcEEEE
Q 039441          442 HPIALVASPNEKLLTV  457 (539)
Q Consensus       442 ~~h~i~n~gne~l~~v  457 (539)
                      |.|++.|..+ .+.+-
T Consensus       282 WwH~V~nled-sIait  296 (451)
T 2yu1_A          282 WIHAVYTPTD-TLVFG  296 (451)
T ss_dssp             CEEEEECSSC-EEEEE
T ss_pred             ceEEEecCCC-eEEEe
Confidence            9999999843 34443

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=93.23  E-value=0.65  Score=44.45  Aligned_cols=80  Identities=14%  Similarity=0.070  Sum_probs=62.6

Q ss_pred             eeEEEeeeCCCeeecccccCCCcEEEEEe-ceEEEEEEeCC------CceeeecCCCcEEEeCCCCeEEEEecCCCceEE
Q 039441          201 YRLAILEANPSTLVVPHHSDAETILVLLK-GKGVITLVSHE------RRESFNMEHGDVISVPAGTTYYLSNQDNVDRLH  273 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~dA~~~~yV~~-G~g~i~~v~pg------~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~  273 (539)
                      .+.-.....++.++=.|++...++++|+. |+....+|+-.      ....+.|..+-.++||+|++|=+++..+  ...
T Consensus        60 ~Q~n~S~s~~GvlRGlH~h~q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd--~a~  137 (197)
T 1nxm_A           60 LQNNVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSD--FVA  137 (197)
T ss_dssp             CEEEEEEEETTBEEEEEECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSS--EEE
T ss_pred             EEEEEEECCCCCcceeeecccceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccC--CeE
Confidence            45555555789999999888999999999 99988888875      3356778789999999999999999974  355


Q ss_pred             EEEEeccCC
Q 039441          274 VAKLLQPVN  282 (539)
Q Consensus       274 iv~l~d~~n  282 (539)
                      ++.+.+...
T Consensus       138 ~~y~~s~~Y  146 (197)
T 1nxm_A          138 YSYLVNDYW  146 (197)
T ss_dssp             EEEEESSCC
T ss_pred             EEEECCCcc
Confidence            555555433

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=93.14  E-value=0.71  Score=44.12  Aligned_cols=79  Identities=9%  Similarity=0.085  Sum_probs=59.3

Q ss_pred             eeeEEEeeeCCCeeecccccC----CCcEEEEEeceEEEEEEeCCC-------ceeeecC--CCcEEEeCCCCeEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSD----AETILVLLKGKGVITLVSHER-------RESFNME--HGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~d----A~~~~yV~~G~g~i~~v~pg~-------~~~~~v~--~GDV~~iPaG~~h~i~N~  266 (539)
                      ..+.-+....++.++=.||+.    ..++++|++|+....+|+-..       ...+.|.  .+-.++||+|++|-++|.
T Consensus        64 f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~l  143 (196)
T 1wlt_A           64 VIQTNMSFSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQAL  143 (196)
T ss_dssp             EEEEEEEEECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEES
T ss_pred             EEEEEEEECCCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEc
Confidence            345555556799999999876    489999999999888888643       2456665  478999999999999999


Q ss_pred             CCCceEEEEEEecc
Q 039441          267 DNVDRLHVAKLLQP  280 (539)
Q Consensus       267 g~~e~L~iv~l~d~  280 (539)
                      .+  ...++.+.+.
T Consensus       144 sd--~a~~ly~~s~  155 (196)
T 1wlt_A          144 ED--SIVIYFITHN  155 (196)
T ss_dssp             SS--EEEEEEEESS
T ss_pred             CC--CeEEEEEeCC
Confidence            74  3444554443

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=92.96  E-value=0.31  Score=52.71  Aligned_cols=70  Identities=24%  Similarity=0.352  Sum_probs=46.3

Q ss_pred             CCCeeec-ccccCCCcEEEEEeceEEEEEEeCCCc---------------------eeeecCCCcEEEeCCCCeEEEEec
Q 039441          209 NPSTLVV-PHHSDAETILVLLKGKGVITLVSHERR---------------------ESFNMEHGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       209 ~P~~l~l-Ph~~dA~~~~yV~~G~g~i~~v~pg~~---------------------~~~~v~~GDV~~iPaG~~h~i~N~  266 (539)
                      .|++.-+ |||=+-+-++.-+.|+=+..+..|...                     ....|++|||++||+|++|+..+.
T Consensus       172 p~Gs~g~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~  251 (489)
T 4diq_A          172 PPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQ  251 (489)
T ss_dssp             CSSBCCSCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEEEBC
T ss_pred             CCCcccccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEEEec
Confidence            4454434 555555555555666666666665421                     146899999999999999999999


Q ss_pred             CCCceEEEEEEe
Q 039441          267 DNVDRLHVAKLL  278 (539)
Q Consensus       267 g~~e~L~iv~l~  278 (539)
                      ++.-.+.+-.-+
T Consensus       252 ~~~~SlhlTi~~  263 (489)
T 4diq_A          252 DGVHSLHLTLST  263 (489)
T ss_dssp             SSCCEEEEEEEE
T ss_pred             CCCceEEEeecc
Confidence            754455544433

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=92.89  E-value=0.28  Score=53.08  Aligned_cols=78  Identities=19%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             cCCceecceecCCCC-EEEEEEeceEEEEEecCCCCc------cchhhhhhhhHHHHHHh-h-hcceeeEEeeeCCCcEE
Q 039441          366 NQGGMMVPHYNSKAT-TIVLVVEGRGRFEMGGPLSSR------WSQESQREQQEEEEEEE-S-SRELQKISANLSPGVVF  436 (539)
Q Consensus       366 ~pGgm~~PHwhpnA~-ei~yV~~G~g~v~vV~p~gs~------~s~~~~~g~~~~~~~e~-~-~~~y~~~~~~L~~GDV~  436 (539)
                      .+|+....|+.+..+ .|..|+.|+=++-++.|.-..      +....   .    +.+. . ...-+-+...|++||++
T Consensus       274 ~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~---~----~~~~~~~~~~~~~~~~~l~pGe~l  346 (488)
T 3kv5_D          274 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSV---T----QSEVFFGDKVDKCYKCVVKQGHTL  346 (488)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCS---S----GGGSCGGGSSSCCEEEEEETTCEE
T ss_pred             CCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCC---c----cchhhhcccccceEEEeeCCCCEE
Confidence            577888889988755 678899999999999885211      00000   0    0000 0 00013445679999999


Q ss_pred             EeCCCCeEEEEcCC
Q 039441          437 IIPPGHPIALVASP  450 (539)
Q Consensus       437 vVPaG~~h~i~n~g  450 (539)
                      +||+|+.|+++|..
T Consensus       347 fIPsGWwH~V~nle  360 (488)
T 3kv5_D          347 FVPTGWIHAVLTSQ  360 (488)
T ss_dssp             EECTTCEEEEEEEE
T ss_pred             EeCCCceEEeeCCC
Confidence            99999999999973

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=92.87  E-value=0.12  Score=53.00  Aligned_cols=58  Identities=24%  Similarity=0.351  Sum_probs=43.2

Q ss_pred             CCeeecccccCCCcEEEEEeceEEEEEEeCCC-------------------------------ceeeecCCCcEEEeCCC
Q 039441          210 PSTLVVPHHSDAETILVLLKGKGVITLVSHER-------------------------------RESFNMEHGDVISVPAG  258 (539)
Q Consensus       210 P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~-------------------------------~~~~~v~~GDV~~iPaG  258 (539)
                      |++..-+||-..+-|..++.|+=++.+..|..                               .....|++||+++||+|
T Consensus       176 ~g~~~~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD~LyiP~g  255 (338)
T 3al5_A          176 PGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPAL  255 (338)
T ss_dssp             TTCEEEEECCSSEEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTCEEEECTT
T ss_pred             CCCCccceECCcccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCCEEEECCC
Confidence            44444456544556667788998888887631                               12457899999999999


Q ss_pred             CeEEEEecC
Q 039441          259 TTYYLSNQD  267 (539)
Q Consensus       259 ~~h~i~N~g  267 (539)
                      ..|++.|.+
T Consensus       256 WwH~v~~l~  264 (338)
T 3al5_A          256 WFHNVISEE  264 (338)
T ss_dssp             CEEEEEESS
T ss_pred             CeEEEeeCC
Confidence            999999996

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=92.77  E-value=1.1  Score=43.19  Aligned_cols=104  Identities=11%  Similarity=0.113  Sum_probs=69.5

Q ss_pred             eEecCCceEEEeeccCccc-ccccC---cceeeEEEeeeCCCeeecccccC----CCcEEEEEeceEEEEEEeCCC----
Q 039441          174 RVRSDSGHMRVLQRFSQKS-HLLRG---IDNYRLAILEANPSTLVVPHHSD----AETILVLLKGKGVITLVSHER----  241 (539)
Q Consensus       174 ~v~se~G~i~vl~~f~~~s-~~l~g---v~~~Rl~il~l~P~~l~lPh~~d----A~~~~yV~~G~g~i~~v~pg~----  241 (539)
                      ++..+-|.+.  +.|.... ....|   ....+.-+....++.++=.||+.    ..++++|++|+....+|+-..    
T Consensus        18 ~~~D~RG~f~--e~~~~~~f~~~~g~~~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpT   95 (205)
T 1oi6_A           18 VFADDRGLLI--LPYQEEAFVEAHGGPLFRVAQTIHSMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPT   95 (205)
T ss_dssp             CEEETTEEEE--CSCBHHHHHHHHSSCCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTT
T ss_pred             eEecCCcCEE--EEeehhhhHhhcCCCCCCEEEEEEEeCCCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCC
Confidence            3455667764  3455432 11112   23445555556789999899776    489999999999888888652    


Q ss_pred             ---ceeeecCC--CcEEEeCCCCeEEEEecCCCceEEEEEEeccC
Q 039441          242 ---RESFNMEH--GDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV  281 (539)
Q Consensus       242 ---~~~~~v~~--GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~  281 (539)
                         ...+.|..  +-.++||+|++|-++|..++  ..++.+.+..
T Consensus        96 fG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~--a~~~y~~s~~  138 (205)
T 1oi6_A           96 FGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD--TVMSYMLSRS  138 (205)
T ss_dssp             TTCEEEEEECSSSCCEEEECTTCEEEEEECSTT--EEEEEEESSC
T ss_pred             CCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC--eEEEEecCCc
Confidence               23556654  68999999999999999854  3445545433

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=92.73  E-value=0.42  Score=51.04  Aligned_cols=66  Identities=23%  Similarity=0.360  Sum_probs=47.1

Q ss_pred             CCCeeec-ccccCCCcEEEEEeceEEEEEEeCCCc-----------------eeeecCCCcEEEeCCCCeEEEEecCC-C
Q 039441          209 NPSTLVV-PHHSDAETILVLLKGKGVITLVSHERR-----------------ESFNMEHGDVISVPAGTTYYLSNQDN-V  269 (539)
Q Consensus       209 ~P~~l~l-Ph~~dA~~~~yV~~G~g~i~~v~pg~~-----------------~~~~v~~GDV~~iPaG~~h~i~N~g~-~  269 (539)
                      .+++.-+ |||-+.+-++..+.|+=+..+..|..+                 ....|++|||++||+|+.||..+.++ .
T Consensus       147 ~~g~~g~~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~~~~  226 (442)
T 2xdv_A          147 PAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLA  226 (442)
T ss_dssp             CTTCBCSCSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEECCSSSC
T ss_pred             CCCCCCccceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEecCCCc
Confidence            4555544 666555666667779888888777521                 24689999999999999999999862 2


Q ss_pred             ceEEE
Q 039441          270 DRLHV  274 (539)
Q Consensus       270 e~L~i  274 (539)
                      ..+.+
T Consensus       227 ~Slhl  231 (442)
T 2xdv_A          227 HSTHV  231 (442)
T ss_dssp             CEEEE
T ss_pred             ceeec
Confidence            34544

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=92.54  E-value=0.18  Score=51.16  Aligned_cols=71  Identities=15%  Similarity=0.095  Sum_probs=46.5

Q ss_pred             eeCCCeeecccccCCCcEEEEEeceEEE--EEEe-CCCc-----eeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          207 EANPSTLVVPHHSDAETILVLLKGKGVI--TLVS-HERR-----ESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       207 ~l~P~~l~lPh~~dA~~~~yV~~G~g~i--~~v~-pg~~-----~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      +|.||+.+.|| .|.-++.+...|..++  .++. |++.     ..+..++|.+|+|-...+||..|.++..++  .+++
T Consensus        97 rL~PG~~I~~H-rD~~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~RI--hLv~  173 (290)
T 1e5r_A           97 RNLKNAIVIPH-RDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQ--SLCV  173 (290)
T ss_dssp             EEEESEEEEEE-CCC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCCC--EEEE
T ss_pred             EeCCCCEeeCc-cCccccccccCCceEEEeeEecCCCcEEEECCEEEecCCCCEEEEcCCCeeEEEcCCCCCeE--EEEE
Confidence            77999999888 4544445455676544  4443 3332     468899999999999999999999865554  4455


Q ss_pred             cc
Q 039441          279 QP  280 (539)
Q Consensus       279 d~  280 (539)
                      |-
T Consensus       174 D~  175 (290)
T 1e5r_A          174 DF  175 (290)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=92.53  E-value=0.86  Score=43.09  Aligned_cols=104  Identities=10%  Similarity=0.062  Sum_probs=69.5

Q ss_pred             eEecCCceEEEeeccCcccccccC--cceeeEEEeeeCCCeeeccccc---CCCcEEEEEeceEEEEEEeCCC-------
Q 039441          174 RVRSDSGHMRVLQRFSQKSHLLRG--IDNYRLAILEANPSTLVVPHHS---DAETILVLLKGKGVITLVSHER-------  241 (539)
Q Consensus       174 ~v~se~G~i~vl~~f~~~s~~l~g--v~~~Rl~il~l~P~~l~lPh~~---dA~~~~yV~~G~g~i~~v~pg~-------  241 (539)
                      ++..+-|.+.  +.|....-.-.|  ....+.-.....++.++=.||+   ...++++|++|+....+|+-..       
T Consensus        21 ~~~D~RG~f~--e~~~~~~~~~~g~~~~f~Q~n~S~s~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~   98 (185)
T 1ep0_A           21 VYTDERGYFM--ETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGE   98 (185)
T ss_dssp             EEEETTEEEE--CCCCHHHHHHTTCCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTC
T ss_pred             eEecCCccEE--EEeehhhHHhcCCCCCEEEEEEEeCcCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCe
Confidence            4556667763  345543310012  2234444445568999988866   7789999999999888888653       


Q ss_pred             ceeeecC--CCcEEEeCCCCeEEEEecCCCceEEEEEEeccC
Q 039441          242 RESFNME--HGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV  281 (539)
Q Consensus       242 ~~~~~v~--~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~  281 (539)
                      ...+.|.  .+-.++||+|++|-++|..++  ..++.+.+..
T Consensus        99 ~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~--a~~~y~~s~~  138 (185)
T 1ep0_A           99 WTGVRLSDENRREFFIPEGFAHGFLALSDE--CIVNYKCTEL  138 (185)
T ss_dssp             EEEEEEETTTCCEEEECTTEEEEEEECSSE--EEEEEEESSC
T ss_pred             EEEEEecCCCCCEEEeCCCeEEEEEEcCCC--eEEEEecCCc
Confidence            2345554  378999999999999999743  5555555543

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=92.48  E-value=0.36  Score=51.64  Aligned_cols=91  Identities=15%  Similarity=0.116  Sum_probs=55.1

Q ss_pred             EEEcCCceecceecCCCC-EEEEEEeceEEEEEecCCCCc-cchhhhhhhhHHHHHHh-h-hcceeeEEeeeCCCcEEEe
Q 039441          363 VEINQGGMMVPHYNSKAT-TIVLVVEGRGRFEMGGPLSSR-WSQESQREQQEEEEEEE-S-SRELQKISANLSPGVVFII  438 (539)
Q Consensus       363 v~L~pGgm~~PHwhpnA~-ei~yV~~G~g~v~vV~p~gs~-~s~~~~~g~~~~~~~e~-~-~~~y~~~~~~L~~GDV~vV  438 (539)
                      +-=.+|+....|+.+.++ .|..|+.|+=+.-++.|.-.. .....-... .. +.+. . ...-+-+...+++||+++|
T Consensus       236 ~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s-~~-~~~~~~~~~~~~~~~v~l~pGetlfI  313 (447)
T 3kv4_A          236 LMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSS-SN-QNEMFFGDQVDKCYKCSVKQGQTLFI  313 (447)
T ss_dssp             EEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTC-SS-GGGSCGGGGSSCCEEEEEETTCEEEE
T ss_pred             EEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccC-cc-hhhhhccccccceEEEEECCCcEEec
Confidence            333567777889888755 678899999999999886311 000000000 00 0000 0 0011335568999999999


Q ss_pred             CCCCeEEEEcCCCCcEEE
Q 039441          439 PPGHPIALVASPNEKLLT  456 (539)
Q Consensus       439 PaG~~h~i~n~gne~l~~  456 (539)
                      |+|+.|+++|..+ .+.+
T Consensus       314 PsGWwH~V~nled-sIai  330 (447)
T 3kv4_A          314 PTGWIHAVLTPVD-CLAF  330 (447)
T ss_dssp             CTTCEEEEEESSC-EEEE
T ss_pred             CCCCeEEEecCCC-EEEE
Confidence            9999999999843 3443

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=92.44  E-value=0.8  Score=44.11  Aligned_cols=74  Identities=11%  Similarity=0.120  Sum_probs=56.0

Q ss_pred             CCCeeecccccC----CCcEEEEEeceEEEEEEeCCCc-------eeeecC--CCcEEEeCCCCeEEEEecCCCceEEEE
Q 039441          209 NPSTLVVPHHSD----AETILVLLKGKGVITLVSHERR-------ESFNME--HGDVISVPAGTTYYLSNQDNVDRLHVA  275 (539)
Q Consensus       209 ~P~~l~lPh~~d----A~~~~yV~~G~g~i~~v~pg~~-------~~~~v~--~GDV~~iPaG~~h~i~N~g~~e~L~iv  275 (539)
                      .|+.++=.||+.    ..++++|++|+....+|+-...       ..+.|.  .+-.++||+|++|-++|..++  ..++
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~--a~~~  155 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH--TIVM  155 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS--EEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC--EEEE
Confidence            789999999875    6899999999999988885421       355665  488999999999999999853  4444


Q ss_pred             EEeccCCCC
Q 039441          276 KLLQPVNTP  284 (539)
Q Consensus       276 ~l~d~~n~p  284 (539)
                      .+.+....|
T Consensus       156 Y~~s~~Y~p  164 (205)
T 3ryk_A          156 YKVDEYYSA  164 (205)
T ss_dssp             EEESSCCCT
T ss_pred             EEcCCCcCC
Confidence            444443333

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=92.38  E-value=1.4  Score=43.07  Aligned_cols=106  Identities=12%  Similarity=0.105  Sum_probs=70.7

Q ss_pred             eEecCCceEEEeeccCccc-ccccC--cceeeEEEeeeCCCeeecccccC----CCcEEEEEeceEEEEEEeCCCc----
Q 039441          174 RVRSDSGHMRVLQRFSQKS-HLLRG--IDNYRLAILEANPSTLVVPHHSD----AETILVLLKGKGVITLVSHERR----  242 (539)
Q Consensus       174 ~v~se~G~i~vl~~f~~~s-~~l~g--v~~~Rl~il~l~P~~l~lPh~~d----A~~~~yV~~G~g~i~~v~pg~~----  242 (539)
                      ++..+-|.+.  +.|.... ....|  ....+.-+....++.++=.||+.    ..++++|++|++...+|+-...    
T Consensus        38 ~~~D~RG~F~--e~~~~~~~~~~~gi~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTf  115 (225)
T 1upi_A           38 IHVDSRGLFF--EWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTF  115 (225)
T ss_dssp             EEEETTEEEE--CSCCHHHHHHHHSSCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTT
T ss_pred             eEecCCcCEE--EEeehhhHHHhcCCCCCeEEEEEEeCCCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCC
Confidence            4566667765  3455432 11112  23445555556799999999876    4899999999998888875422    


Q ss_pred             ---eeeecCC--CcEEEeCCCCeEEEEecCCCceEEEEEEeccCCC
Q 039441          243 ---ESFNMEH--GDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNT  283 (539)
Q Consensus       243 ---~~~~v~~--GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~  283 (539)
                         ..+.|..  +-.++||+|++|-++|..++  .+++.+.+....
T Consensus       116 G~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~--a~vly~~s~~Y~  159 (225)
T 1upi_A          116 GRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN--STVMYLCSAEYN  159 (225)
T ss_dssp             TCEEEEEEETTTCCEEEECTTCEEEEEECSSS--EEEEEEESSCCC
T ss_pred             CcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC--EEEEEecCCccC
Confidence               3455544  68999999999999999854  345555554333

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=92.32  E-value=0.86  Score=43.97  Aligned_cols=74  Identities=14%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEe--CCCc-----eeeecCCCcEEEeCCC--CeEEEEecCCCc
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVS--HERR-----ESFNMEHGDVISVPAG--TTYYLSNQDNVD  270 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~--pg~~-----~~~~v~~GDV~~iPaG--~~h~i~N~g~~e  270 (539)
                      .+-|.+|...|+...-+|=|.+..++.|++|.-+.+.-.  +++.     ....+.+||+++|+++  .+|-+.|...++
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d~  151 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSDR  151 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             CEEEEEEEECCCCcCCCCCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCCC
Confidence            455777888999999999444999999999999887744  2222     2478999999999987  899999985445


Q ss_pred             eEE
Q 039441          271 RLH  273 (539)
Q Consensus       271 ~L~  273 (539)
                      ..+
T Consensus       152 ~av  154 (211)
T 3uss_A          152 TSI  154 (211)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            443

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=92.32  E-value=0.87  Score=43.01  Aligned_cols=104  Identities=12%  Similarity=0.029  Sum_probs=68.4

Q ss_pred             eEecCCceEEEeeccCccc-ccccC--cceeeEEEeeeCCCeeeccccc---CCCcEEEEEeceEEEEEEeCCC------
Q 039441          174 RVRSDSGHMRVLQRFSQKS-HLLRG--IDNYRLAILEANPSTLVVPHHS---DAETILVLLKGKGVITLVSHER------  241 (539)
Q Consensus       174 ~v~se~G~i~vl~~f~~~s-~~l~g--v~~~Rl~il~l~P~~l~lPh~~---dA~~~~yV~~G~g~i~~v~pg~------  241 (539)
                      ++..+-|.+..  .|.... ....|  ....+.-+....++.++=.||+   ...++++|++|+...-+|+-..      
T Consensus        21 ~~~D~RG~f~e--~~~~~~~~~~~g~~~~f~Q~n~S~s~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg   98 (184)
T 2ixk_A           21 VFGDDRGFFFE--SYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFG   98 (184)
T ss_dssp             EEEETTEEEEE--EEEHHHHHHHHSSCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTT
T ss_pred             eEecCCccEEE--EeehhhhHhhcCCCCCEEEEEEEeCCCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCC
Confidence            45566676653  444332 11112  2234444444568999988866   6789999999999888888543      


Q ss_pred             -ceeeecCC--CcEEEeCCCCeEEEEecCCCceEEEEEEeccC
Q 039441          242 -RESFNMEH--GDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV  281 (539)
Q Consensus       242 -~~~~~v~~--GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~  281 (539)
                       ...+.|..  +-.++||+|++|-++|..++  ..++.+.+..
T Consensus        99 ~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~--a~~~y~~s~~  139 (184)
T 2ixk_A           99 QWVGERLSAENKRQMWIPAGFAHGFVVLSEY--AEFLYKTTDF  139 (184)
T ss_dssp             CEEEEEEETTTCCEEEECTTEEEEEEECSSE--EEEEEEESSC
T ss_pred             eEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC--EEEEEeCCCc
Confidence             23455543  68999999999999999743  5555555543

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=92.26  E-value=0.5  Score=48.66  Aligned_cols=60  Identities=20%  Similarity=0.184  Sum_probs=45.9

Q ss_pred             CCCeeecccccCCC---cEEEEEeceEEEEEEeCCCc----------------------------------------eee
Q 039441          209 NPSTLVVPHHSDAE---TILVLLKGKGVITLVSHERR----------------------------------------ESF  245 (539)
Q Consensus       209 ~P~~l~lPh~~dA~---~~~yV~~G~g~i~~v~pg~~----------------------------------------~~~  245 (539)
                      -|.+-..|-|.|..   .|..++.|+=++.++.|...                                        ...
T Consensus       179 G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~~~~  258 (336)
T 3k2o_A          179 GPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEI  258 (336)
T ss_dssp             ECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCCEEE
T ss_pred             CCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCceEEE
Confidence            55544555565554   49999999999999987631                                        023


Q ss_pred             ecCCCcEEEeCCCCeEEEEecCC
Q 039441          246 NMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       246 ~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      .+++||+++||+|..|++.|.++
T Consensus       259 ~l~pGd~l~iP~gw~H~v~~~~~  281 (336)
T 3k2o_A          259 LQKPGETVFVPGGWWHVVLNLDT  281 (336)
T ss_dssp             EECTTCEEEECTTCEEEEEESSC
T ss_pred             EECCCCEEEeCCCCcEEEecCCC
Confidence            57999999999999999999973

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=92.20  E-value=0.28  Score=51.26  Aligned_cols=80  Identities=19%  Similarity=0.245  Sum_probs=53.0

Q ss_pred             EEEcCCceecceecCCCC-EEEEEEeceEEEEEecCCCCc------cchhhhhhhhHHHHHHh-hh-cceeeEEeeeCCC
Q 039441          363 VEINQGGMMVPHYNSKAT-TIVLVVEGRGRFEMGGPLSSR------WSQESQREQQEEEEEEE-SS-RELQKISANLSPG  433 (539)
Q Consensus       363 v~L~pGgm~~PHwhpnA~-ei~yV~~G~g~v~vV~p~gs~------~s~~~~~g~~~~~~~e~-~~-~~y~~~~~~L~~G  433 (539)
                      +-=.+|+....|+.+..+ .|..|+.|+=+.-++.|....      +..+.   .    +.+. .. ..-+-+...+++|
T Consensus       152 ~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~---~----~~e~~~~~~~~~~~ev~l~pG  224 (371)
T 3k3o_A          152 LMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSS---N----QNEMFFGDQVDKCYKCSVKQG  224 (371)
T ss_dssp             EEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTST---T----GGGSCGGGTSSCCEEEEEETT
T ss_pred             EEcCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCC---c----cchhhcccccCceEEEEECCC
Confidence            334577888889988866 477899999999999886321      00000   0    0000 00 0013355689999


Q ss_pred             cEEEeCCCCeEEEEcC
Q 039441          434 VVFIIPPGHPIALVAS  449 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~  449 (539)
                      |+++||+|+.|+++|.
T Consensus       225 EtLfIPsGWwH~V~nl  240 (371)
T 3k3o_A          225 QTLFIPTGWIHAVLTP  240 (371)
T ss_dssp             CEEEECTTCEEEEEEE
T ss_pred             cEEEeCCCCeEEEecC
Confidence            9999999999999997

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=91.82  E-value=1.4  Score=42.61  Aligned_cols=107  Identities=8%  Similarity=0.038  Sum_probs=70.9

Q ss_pred             eeEecCCceEEEeeccCccc-ccccC--cceeeEEEeeeCCCeeecccccC----CCcEEEEEeceEEEEEEeCCC----
Q 039441          173 YRVRSDSGHMRVLQRFSQKS-HLLRG--IDNYRLAILEANPSTLVVPHHSD----AETILVLLKGKGVITLVSHER----  241 (539)
Q Consensus       173 ~~v~se~G~i~vl~~f~~~s-~~l~g--v~~~Rl~il~l~P~~l~lPh~~d----A~~~~yV~~G~g~i~~v~pg~----  241 (539)
                      .++..+-|.+.  +.|.... ....|  ....+.-+....++.++=.||+.    ..++++|++|++...+|+-..    
T Consensus        26 ~~~~D~RG~F~--e~~~~~~~~~~~gi~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpT  103 (216)
T 2c0z_A           26 EQRADPRGVFL--DWYHVDRFAEAIGRPLRLAQANLSVSVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPT  103 (216)
T ss_dssp             EEEEETTEEEE--ECCCHHHHHHHHSSCCCCCEEEEEEEETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTT
T ss_pred             CeEecCCcCEE--EEeehhHHHHhcCCCCCEEEEEEEeCCCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCC
Confidence            34566677765  3555433 11112  22344444455789999999876    489999999999888888642    


Q ss_pred             ---ceeeecCC--CcEEEeCCCCeEEEEecCCCceEEEEEEeccCCC
Q 039441          242 ---RESFNMEH--GDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNT  283 (539)
Q Consensus       242 ---~~~~~v~~--GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~  283 (539)
                         ...+.|..  +-.++||+|++|-++|..++  .+++.+.+....
T Consensus       104 fG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~--a~~ly~~s~~Y~  148 (216)
T 2c0z_A          104 YGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE--ATLCYLSSGTYD  148 (216)
T ss_dssp             TTCEEEEEEETTTCCEEEECTTEEEEEEECSSE--EEEEEEESSCCC
T ss_pred             CCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC--eEEEEecCCccC
Confidence               23555544  57999999999999999753  445555554333

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=91.80  E-value=1.7  Score=40.92  Aligned_cols=80  Identities=9%  Similarity=-0.007  Sum_probs=58.0

Q ss_pred             eeEEEeeeCCCeeeccccc----CCCcEEEEEeceEEEEEEeCCC-------ceeeecCC--CcEEEeCCCCeEEEEecC
Q 039441          201 YRLAILEANPSTLVVPHHS----DAETILVLLKGKGVITLVSHER-------RESFNMEH--GDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~----dA~~~~yV~~G~g~i~~v~pg~-------~~~~~v~~--GDV~~iPaG~~h~i~N~g  267 (539)
                      .+.-.....++.++=.||+    ...++++|++|+....+|+-..       ...+.|..  +-.++||+|++|-++|..
T Consensus        47 ~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~ls  126 (183)
T 1dzr_A           47 VQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLS  126 (183)
T ss_dssp             CEEEEEEEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECS
T ss_pred             EEEEEEeCCCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcC
Confidence            4444444568999988876    5689999999999888888652       23455543  689999999999999997


Q ss_pred             CCceEEEEEEeccCC
Q 039441          268 NVDRLHVAKLLQPVN  282 (539)
Q Consensus       268 ~~e~L~iv~l~d~~n  282 (539)
                      ++  ..++.+.+...
T Consensus       127 d~--a~~~y~~s~~Y  139 (183)
T 1dzr_A          127 EY--AEFLYKATNYY  139 (183)
T ss_dssp             SE--EEEEEEESSCC
T ss_pred             CC--eEEEEEcCCcc
Confidence            53  44555554433

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=91.70  E-value=0.5  Score=49.80  Aligned_cols=81  Identities=19%  Similarity=0.196  Sum_probs=52.1

Q ss_pred             EEEc-CCceecceecCCCC-EEEEEEeceEEEEEecCCCCc------cchhhhhhhhHHHHHHhh-hcceeeEEeeeCCC
Q 039441          363 VEIN-QGGMMVPHYNSKAT-TIVLVVEGRGRFEMGGPLSSR------WSQESQREQQEEEEEEES-SRELQKISANLSPG  433 (539)
Q Consensus       363 v~L~-pGgm~~PHwhpnA~-ei~yV~~G~g~v~vV~p~gs~------~s~~~~~g~~~~~~~e~~-~~~y~~~~~~L~~G  433 (539)
                      +-|. +|+....|+.+..+ .|..++.|+=+.-++.|....      +..+.   .   +.+.-. ...-+-+...+.+|
T Consensus       179 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~---~---~~e~~~~~~~~~~~~v~l~pG  252 (397)
T 3kv9_A          179 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSV---T---QSEVFFGDKVDKCYKCVVKQG  252 (397)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSG---G---GGGSCGGGGSSCCEEEEEETT
T ss_pred             EEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCC---C---cchhhhccccCceEEEEECCC
Confidence            4444 46676779998865 578999999999999886311      00000   0   000000 00013345679999


Q ss_pred             cEEEeCCCCeEEEEcC
Q 039441          434 VVFIIPPGHPIALVAS  449 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~  449 (539)
                      |+++||+|+.|++.|.
T Consensus       253 e~lfIPsGW~H~V~nl  268 (397)
T 3kv9_A          253 HTLFVPTGWIHAVLTS  268 (397)
T ss_dssp             CEEEECTTCEEEEEEE
T ss_pred             CEEEeCCCCeEEccCC
Confidence            9999999999999997

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=91.43  E-value=1.6  Score=42.01  Aligned_cols=82  Identities=11%  Similarity=0.069  Sum_probs=62.6

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecC--CCCccchhhhhhhhHHHHHHhhhcceeeE-EeeeCCC
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP--LSSRWSQESQREQQEEEEEEESSRELQKI-SANLSPG  433 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p--~gs~~s~~~~~g~~~~~~~e~~~~~y~~~-~~~L~~G  433 (539)
                      .+++..+...||--..+|=|. +.-++.|++|....++..-  ++.-        .             ... ...|.+|
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g~~--------~-------------~~~~~~~l~~G  129 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGGRP--------H-------------PSGARRRLEPG  129 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCE--------E-------------ECSCCEEECTT
T ss_pred             CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCCCc--------c-------------cccceEEecCC
Confidence            478889999999999999997 9999999999999988552  2210        0             001 2569999


Q ss_pred             cEEEeCCC--CeEEEEcC-CCCcEEEEEEe
Q 039441          434 VVFIIPPG--HPIALVAS-PNEKLLTVGFS  460 (539)
Q Consensus       434 DV~vVPaG--~~h~i~n~-gne~l~~v~F~  460 (539)
                      ||++++.+  ..|-+.|. +++..+-|-+.
T Consensus       130 ~v~~~~p~~g~IH~V~N~~~d~~avSLHvY  159 (211)
T 3uss_A          130 EVEALSPRIGDVHQVSNAFSDRTSISIHVY  159 (211)
T ss_dssp             CEEEEBTTTBCCEEEEESCSSSCEEEEEEE
T ss_pred             CEEEECCCCCCEEEEccCCCCCCEEEEEEc
Confidence            99999987  89999986 46665555443

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=91.09  E-value=0.52  Score=49.64  Aligned_cols=87  Identities=17%  Similarity=0.152  Sum_probs=53.7

Q ss_pred             EEEEcCCceecceecCCC-CEEEEEEeceEEEEEecCCCCcc-chhhhhhhhHHHHHHh-hh-cceeeEEeeeCCCcEEE
Q 039441          362 YVEINQGGMMVPHYNSKA-TTIVLVVEGRGRFEMGGPLSSRW-SQESQREQQEEEEEEE-SS-RELQKISANLSPGVVFI  437 (539)
Q Consensus       362 ~v~L~pGgm~~PHwhpnA-~ei~yV~~G~g~v~vV~p~gs~~-s~~~~~g~~~~~~~e~-~~-~~y~~~~~~L~~GDV~v  437 (539)
                      .+-=.+|+....|+.+.+ +.|..|+.|+=+.-++.|....- ....-... .. +.+. .. ..-+-+...+++||+++
T Consensus       178 ~~mGp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s-~~-~~e~~~~~~~~~~~ev~l~pGEtlf  255 (392)
T 3pua_A          178 CLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSA-SN-HSEMFFADQVDKCYKCIVKQGQTLF  255 (392)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHS-TT-GGGSCGGGGSSCCEEEEEETTCEEE
T ss_pred             EEEeCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccC-cc-hhhhhhcccccceEEEEECCCcEEe
Confidence            344457888888988885 57889999999998888853110 00000000 00 0000 00 00123456799999999


Q ss_pred             eCCCCeEEEEcCC
Q 039441          438 IPPGHPIALVASP  450 (539)
Q Consensus       438 VPaG~~h~i~n~g  450 (539)
                      ||+|+.|+++|..
T Consensus       256 IPsGWwH~V~nle  268 (392)
T 3pua_A          256 IPSGWIYATLTPV  268 (392)
T ss_dssp             ECTTCEEEEEEEE
T ss_pred             eCCCceEEEecCC
Confidence            9999999999973

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=90.90  E-value=0.48  Score=50.73  Aligned_cols=66  Identities=12%  Similarity=0.208  Sum_probs=48.0

Q ss_pred             eeEEEeeeCCCeeeccccc---CCCcEEEEEeceEEEEEEeCCCc--------------------------eeeecCCCc
Q 039441          201 YRLAILEANPSTLVVPHHS---DAETILVLLKGKGVITLVSHERR--------------------------ESFNMEHGD  251 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~---dA~~~~yV~~G~g~i~~v~pg~~--------------------------~~~~v~~GD  251 (539)
                      +|..+  |-|.+-.-+-|.   .+..|..|+.|+=+.-++.|...                          ....+++||
T Consensus       232 ~r~~~--mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGe  309 (447)
T 3kv4_A          232 QKYCL--MSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQ  309 (447)
T ss_dssp             SCEEE--EECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTC
T ss_pred             eeEEE--EeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCc
Confidence            44444  345444444443   44558999999999988888632                          124689999


Q ss_pred             EEEeCCCCeEEEEecCC
Q 039441          252 VISVPAGTTYYLSNQDN  268 (539)
Q Consensus       252 V~~iPaG~~h~i~N~g~  268 (539)
                      +++||+|..|+++|.++
T Consensus       310 tlfIPsGWwH~V~nled  326 (447)
T 3kv4_A          310 TLFIPTGWIHAVLTPVD  326 (447)
T ss_dssp             EEEECTTCEEEEEESSC
T ss_pred             EEecCCCCeEEEecCCC
Confidence            99999999999999964

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=90.69  E-value=6  Score=37.01  Aligned_cols=112  Identities=13%  Similarity=0.051  Sum_probs=74.8

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceE-EEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc--
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRG-RFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV--  434 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g-~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD--  434 (539)
                      .++.+.-|.+|.+..-|-. +++||-+...|.. .+-++.++|.-                    .-.++-.+|..|+  
T Consensus        53 ~TaIYfLL~~~~~S~~HRv-~sdEiW~~~~G~pL~l~~~~~dG~~--------------------~~~~LG~d~~~Ge~~  111 (172)
T 3loi_A           53 LTMIYYLMQAGQPDPFHRV-KSDETFVHNLGGSMKIHMIHPDGSY--------------------SCSILGNPLEHPEAR  111 (172)
T ss_dssp             CEEEEEEEETTCCEEEEEC-SSEEEEEEEEESCEEEEEECTTSCE--------------------EEEEESCTTTSTTCB
T ss_pred             ceEEEEEEcCCCCccCEEe-cCCEEEEEEcCCCEEEEEEcCCCce--------------------EEEEeCCCcccCCcc
Confidence            5677788899996644443 6999999999975 89999998632                    0023334677888  


Q ss_pred             -EEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhh
Q 039441          435 -VFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVF  501 (539)
Q Consensus       435 -V~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~  501 (539)
                       .+|||+|+...-..   .+..+|+-.+.+.+    ..+    =|.-++++-|.+.|.--.+.|++|-
T Consensus       112 pQ~vVP~G~WqaA~~---~~~~LVsctVaPGF----~f~----dfel~~~~~L~~~~P~~~~~I~~lt  168 (172)
T 3loi_A          112 HQVVVPRRVWFAQEV---DGYCLASVLVAPGF----DFK----DFSLGKREELIKEYPQHRDVIMRCT  168 (172)
T ss_dssp             SEEEECTTCEEEEEE---SSEEEEEEEEESCC----CGG----GCEECCHHHHHHHCGGGHHHHHHTS
T ss_pred             eEEEECCCEEEEEEe---CCcEEEEEEEcCCc----cch----hcEEcCHHHHHHHCchHHHHHHHhc
Confidence             78999999777655   35777765555521    111    1122467777777866667777764

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=90.65  E-value=0.98  Score=48.20  Aligned_cols=65  Identities=17%  Similarity=0.308  Sum_probs=45.9

Q ss_pred             ceeeEEEeeeC--CC-eeecccccCCCcEEEEEeceEEEEEEeCCCcee-eecCCCcEEEeCCCCeEEEEec
Q 039441          199 DNYRLAILEAN--PS-TLVVPHHSDAETILVLLKGKGVITLVSHERRES-FNMEHGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       199 ~~~Rl~il~l~--P~-~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~-~~v~~GDV~~iPaG~~h~i~N~  266 (539)
                      ..+.+..+++.  ++ ...++ -.+.+.|+.|++|+|+|+.  .+.... ..|++||+++|||+....|.+.
T Consensus       355 ~eF~v~~~~~~~~~~~~~~~~-~~~~~~illv~~G~g~i~~--~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          355 AEFSVLQTIFDKSKGGKQVIE-GLNGPSIVIATNGKGTIQI--TGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             SSCEEEEEECCTTTCCEEEEC-CCSSCEEEEEEESEEEEEE--TTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             CeEEEEEEEecCCCCceeEEe-cCCCcEEEEEEeCeEEEEe--CCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            34555556667  44 23332 2367889999999999876  222122 6899999999999987778876

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=90.55  E-value=1.3  Score=42.23  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=55.6

Q ss_pred             eEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCC--Cc-----eeeecCCCcEEEeCCCCeEEEEecCCCceEEE
Q 039441          202 RLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHE--RR-----ESFNMEHGDVISVPAGTTYYLSNQDNVDRLHV  274 (539)
Q Consensus       202 Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg--~~-----~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~i  274 (539)
                      ...+..|.|++-+-||.-..+..+     +.-++++.|.  |.     ++...+.|.+|+|-.-..|+..|.++.  -+|
T Consensus       103 ~a~fs~L~pG~~I~pH~g~~n~~l-----R~HL~L~~p~~~~~i~V~~~~~~w~eGe~~~fDds~~Hev~N~~d~--~Rv  175 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWPHTGPTNCRL-----RMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASS--FRL  175 (197)
T ss_dssp             EEEEEEECTTEEEEEECCSCTTEE-----EEEEEEECCSSSEEEEETTEEECCCBTCEEEECTTSCEEEEECSSS--CEE
T ss_pred             eEEEEEeCCCCCcCCeeCCCCCeE-----EEEEEEEeCCCCcEEEECCEEEEeeCCcEEEEcCCeEEEEEECCCC--CEE
Confidence            467788999999999976544333     6678888875  32     467899999999999999999999743  556


Q ss_pred             EEEec
Q 039441          275 AKLLQ  279 (539)
Q Consensus       275 v~l~d  279 (539)
                      ++++|
T Consensus       176 vL~~D  180 (197)
T 3rcq_A          176 IFIVD  180 (197)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            67776

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=90.37  E-value=0.6  Score=50.01  Aligned_cols=61  Identities=13%  Similarity=0.195  Sum_probs=48.7

Q ss_pred             eCCCeeecccccCC---CcEEEEEeceEEEEEEeCCCce--------------------------eeecCCCcEEEeCCC
Q 039441          208 ANPSTLVVPHHSDA---ETILVLLKGKGVITLVSHERRE--------------------------SFNMEHGDVISVPAG  258 (539)
Q Consensus       208 l~P~~l~lPh~~dA---~~~~yV~~G~g~i~~v~pg~~~--------------------------~~~v~~GDV~~iPaG  258 (539)
                      |-|.+-..|-|.|-   ..|..|+.|+=+.-++.|....                          ...|.+||+++||+|
T Consensus       202 mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPsG  281 (451)
T 2yu1_A          202 MSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSG  281 (451)
T ss_dssp             EECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECTT
T ss_pred             EccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCCC
Confidence            46666666777665   4589999999999999887421                          246789999999999


Q ss_pred             CeEEEEecCC
Q 039441          259 TTYYLSNQDN  268 (539)
Q Consensus       259 ~~h~i~N~g~  268 (539)
                      ..|+++|.++
T Consensus       282 WwH~V~nled  291 (451)
T 2yu1_A          282 WIHAVYTPTD  291 (451)
T ss_dssp             CEEEEECSSC
T ss_pred             ceEEEecCCC
Confidence            9999999973

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=90.10  E-value=2.4  Score=45.42  Aligned_cols=86  Identities=13%  Similarity=0.054  Sum_probs=58.9

Q ss_pred             CceEEEeCCcccccccccceeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHH
Q 039441          339 FGRFFEATPKDYQQLQEIDAGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEE  417 (539)
Q Consensus       339 ~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e  417 (539)
                      -|..+.+.+ .-+.++. |+++.....+. +| -.-.+|.++++++|+-+|.+.+.-..-                    
T Consensus       140 ~Gl~tl~gn-gD~~~~~-G~aI~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG--------------------  196 (471)
T 1eyb_A          140 SGLHTLCGA-GDIKSNN-GLAIHIFLCNT-SMENRCFYNSDGDFLIVPQKGNLLIYTEFG--------------------  196 (471)
T ss_dssp             TTEEEEEEE-SCGGGTC-CEEEEEEEECS-CCCSEEEEESSEEEEEEEEESCEEEEETTE--------------------
T ss_pred             cchhheecc-CCccccc-ceEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEecc--------------------
Confidence            455444443 3333332 56665555554 56 556788899999999999998865443                    


Q ss_pred             hhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEE
Q 039441          418 ESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       418 ~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~  458 (539)
                             ++  .|++||++|||+|..+.+.-.+  +...+.
T Consensus       197 -------~L--~v~pgei~VIPRGi~frv~l~~--p~Rgyi  226 (471)
T 1eyb_A          197 -------KM--LVQPNEICVIQRGMRFSIDVFE--ETRGYI  226 (471)
T ss_dssp             -------EE--EECTTEEEEECTTCCEEEECSS--SEEEEE
T ss_pred             -------cE--EeccCCEEEECCccEEEEeeCC--CceEEE
Confidence                   33  5899999999999999887664  554443

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=89.79  E-value=0.62  Score=50.40  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             eCCCeeecccccC---CCcEEEEEeceEEEEEEeCCCc--------------------------eeeecCCCcEEEeCCC
Q 039441          208 ANPSTLVVPHHSD---AETILVLLKGKGVITLVSHERR--------------------------ESFNMEHGDVISVPAG  258 (539)
Q Consensus       208 l~P~~l~lPh~~d---A~~~~yV~~G~g~i~~v~pg~~--------------------------~~~~v~~GDV~~iPaG  258 (539)
                      |-|.+-.-|-|.|   +..|..|+.|+=+..++.|...                          ....+++||+++||+|
T Consensus       272 mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIPsG  351 (488)
T 3kv5_D          272 MGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTG  351 (488)
T ss_dssp             EECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEECTT
T ss_pred             EcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeCCC
Confidence            3454444444444   4458899999999999988531                          1246899999999999


Q ss_pred             CeEEEEecC
Q 039441          259 TTYYLSNQD  267 (539)
Q Consensus       259 ~~h~i~N~g  267 (539)
                      ..|+++|.+
T Consensus       352 WwH~V~nle  360 (488)
T 3kv5_D          352 WIHAVLTSQ  360 (488)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEeeCCC
Confidence            999999986

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=89.43  E-value=0.4  Score=50.16  Aligned_cols=60  Identities=15%  Similarity=0.218  Sum_probs=45.2

Q ss_pred             eCCCeeecccccC---CCcEEEEEeceEEEEEEeCCCc--------------------------eeeecCCCcEEEeCCC
Q 039441          208 ANPSTLVVPHHSD---AETILVLLKGKGVITLVSHERR--------------------------ESFNMEHGDVISVPAG  258 (539)
Q Consensus       208 l~P~~l~lPh~~d---A~~~~yV~~G~g~i~~v~pg~~--------------------------~~~~v~~GDV~~iPaG  258 (539)
                      |-|.+-.-|-|.|   +..|..|+.|+=+.-++.|...                          ....+++||+++||+|
T Consensus       153 mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIPsG  232 (371)
T 3k3o_A          153 MSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTG  232 (371)
T ss_dssp             EECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEECTT
T ss_pred             EcCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeCCC
Confidence            3555545555544   3458899999999988887632                          1246899999999999


Q ss_pred             CeEEEEecC
Q 039441          259 TTYYLSNQD  267 (539)
Q Consensus       259 ~~h~i~N~g  267 (539)
                      ..|+++|.+
T Consensus       233 WwH~V~nle  241 (371)
T 3k3o_A          233 WIHAVLTPV  241 (371)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEecCC
Confidence            999999986

>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*

Probab=89.40  E-value=9.8  Score=36.46  Aligned_cols=113  Identities=14%  Similarity=0.186  Sum_probs=68.1

Q ss_pred             eeEEEEEEcCCc-eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc--
Q 039441          358 AGVTYVEINQGG-MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV--  434 (539)
Q Consensus       358 isva~v~L~pGg-m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD--  434 (539)
                      .++.+.-|++++ +..-|=. +|++|-|...|.+..-++.+++.-                    .-.++-.+|..|+  
T Consensus        79 ~TaIYfLL~~~~~~S~wHRv-~sdEiW~~h~G~p~~~li~~dg~~--------------------~~~~LG~dl~~Ge~p  137 (203)
T 1xe7_A           79 STLIYYLLTPDSPIGKFHKN-INRIIHILQRGKGQYVLVYPDGQV--------------------KSFKVGFDYKNGEVS  137 (203)
T ss_dssp             CEEEEEEEBTTBCEEEEEEE-SSCEEEEEEEECEEEEEECTTSCE--------------------EEEEESSCGGGTCBS
T ss_pred             eeEEEEEEcCCCCcccceee-CCCEEEEEEcCCccEEEEcCCCCE--------------------EEEEeCCCcccCccc
Confidence            456667788887 6644443 699999999998877778887631                    0023344566676  


Q ss_pred             EEEeCCCCeEEEEcCCCCcE---EEEEEeecCCCCccccccccchhcccCcHH-HHHHHcCCCHHHHHHhh
Q 039441          435 VFIIPPGHPIALVASPNEKL---LTVGFSLNARNNQRNFLAGKINIMNQVERE-TMEVAFNVPARLIERVF  501 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l---~~v~F~~na~n~~~~fLAG~~svL~~~p~e-vLa~AF~vs~e~v~kL~  501 (539)
                      .+|||+|+...-....+...   .+|+-.+.+.+   . .+    =|.-++++ .|.+.|.  .+.+++|.
T Consensus       138 Q~vVPaG~WqaA~~~~~~~~~~~tLVgCtVaPGF---d-F~----dFel~~~~~~L~~~~P--~~~~~~l~  198 (203)
T 1xe7_A          138 QWVVPGGVFKASFLLPNEEFDNGFLISEVVVPGF---D-FE----DHTFLKGEDELKHLVG--PEKAAELA  198 (203)
T ss_dssp             EEEECTTCEEEEEECCCTTTTTCEEEEEEESSCC---C-GG----GEEECCHHHHHHHHHC--HHHHHHTG
T ss_pred             EEEEcCCEEEEeEecCCCCcccceEEEEEecCCc---c-ch----hcEecCCcHHHHHHCC--HHHHHHHH
Confidence            48999999887654322222   56654555521   1 11    12223555 5566664  56666654

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=88.89  E-value=6.6  Score=38.20  Aligned_cols=132  Identities=8%  Similarity=0.059  Sum_probs=74.6

Q ss_pred             eeEEEEEEcCCceecceecC-CCCEEEEEEeceE-EEEEecCCCCc----cchhhhhhhhHH--HHHHhhhc---ceee-
Q 039441          358 AGVTYVEINQGGMMVPHYNS-KATTIVLVVEGRG-RFEMGGPLSSR----WSQESQREQQEE--EEEEESSR---ELQK-  425 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhp-nA~ei~yV~~G~g-~v~vV~p~gs~----~s~~~~~g~~~~--~~~e~~~~---~y~~-  425 (539)
                      .++.+.-|++|...  |||- ++++|-+...|.. .+-++.++|..    .-+.   +...+  ....+...   .|+. 
T Consensus        60 ~TaIYfLL~~g~~S--~~HRv~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~~---~~~P~~~~~~~~~~~~~~~~~~~  134 (225)
T 3m3i_A           60 YTTIYFLCTPESPS--HLHRLCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQP---PAAPQAETDTADARPKYQVYRRV  134 (225)
T ss_dssp             CEEEEEEECSSSCE--EEEECSSEEEEEEEEESCEEEEEEESSSTTTTC---------------------CCSSCEEEEE
T ss_pred             ceeEEEEecCCCCc--ccEEecCCEEEEEECCCCEEEEEEcCCCcccccccccc---cccccccccccccccccCceEEE
Confidence            56677788999975  5553 6999999999985 78888887610    0000   00000  00000000   1222 


Q ss_pred             -EEeeeCCCc--EEEeCCCCeEEEEcCCCC-----cEEEEEEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHH
Q 039441          426 -ISANLSPGV--VFIIPPGHPIALVASPNE-----KLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLI  497 (539)
Q Consensus       426 -~~~~L~~GD--V~vVPaG~~h~i~n~gne-----~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v  497 (539)
                       +-.+|..|+  .+|||+|+...-...++.     +..+|+-.+.+.+    ..+    =|.-++++-|.+.|.--.+.|
T Consensus       135 ~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtVaPGF----dF~----DFel~~~~~L~~~~P~~~~~I  206 (225)
T 3m3i_A          135 LVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIVSPGF----DYR----DFEIFTQAQLMELYPQHEAVI  206 (225)
T ss_dssp             EESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEEESCC----CGG----GCEECBHHHHHHHCGGGHHHH
T ss_pred             EeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEEcCCc----cch----hcEecCHHHHHHHCchHHHHH
Confidence             223456676  579999998877655443     5677765555522    111    112246777777776666777


Q ss_pred             HHhhc
Q 039441          498 ERVFG  502 (539)
Q Consensus       498 ~kL~~  502 (539)
                      .+|-.
T Consensus       207 ~~lt~  211 (225)
T 3m3i_A          207 KQMAY  211 (225)
T ss_dssp             HHHSB
T ss_pred             HHhch
Confidence            77743

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=88.78  E-value=0.48  Score=49.91  Aligned_cols=65  Identities=17%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             eeEEEeeeCCCeeecccccC---CCcEEEEEeceEEEEEEeCCCc--------------------------eeeecCCCc
Q 039441          201 YRLAILEANPSTLVVPHHSD---AETILVLLKGKGVITLVSHERR--------------------------ESFNMEHGD  251 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~d---A~~~~yV~~G~g~i~~v~pg~~--------------------------~~~~v~~GD  251 (539)
                      +|..+  |-|.+-.-+-|.|   ++.|..|+.|+=+.-++.|...                          ....+++||
T Consensus       175 ~r~~~--mGp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGE  252 (392)
T 3pua_A          175 TKYCL--ICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQ  252 (392)
T ss_dssp             SCEEE--EECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTC
T ss_pred             eeEEE--EeCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCc
Confidence            55544  3454444444443   4679999999999988887642                          124679999


Q ss_pred             EEEeCCCCeEEEEecC
Q 039441          252 VISVPAGTTYYLSNQD  267 (539)
Q Consensus       252 V~~iPaG~~h~i~N~g  267 (539)
                      +++||+|..|+++|.+
T Consensus       253 tlfIPsGWwH~V~nle  268 (392)
T 3pua_A          253 TLFIPSGWIYATLTPV  268 (392)
T ss_dssp             EEEECTTCEEEEEEEE
T ss_pred             EEeeCCCceEEEecCC
Confidence            9999999999999986

>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}

Probab=88.26  E-value=0.085  Score=36.68  Aligned_cols=39  Identities=21%  Similarity=0.538  Sum_probs=33.2

Q ss_pred             CCchhhHHHHHHHhhhhccchHhHHHHHHHHHHHHhhhh
Q 039441           99 RDPKWQHEQCLKQCERRESGEQQQQQCKSWCEKHRQKGQ  137 (539)
Q Consensus        99 ~~p~~~~~~c~~~c~~~~~~~~~~~~c~~~c~~~~~~~~  137 (539)
                      ..|++.|..|+.-|..-+-+.+--.+|...|++++..||
T Consensus         2 ekpqqeleecqnvcrmkrwstemvhrcekkceekferqq   40 (41)
T 2lqx_A            2 EKPQQELEECQNVCRMKRWSTEMVHRCEKKCEEKFERQQ   40 (41)
Confidence            358889999999999988566678899999999987765

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=88.49  E-value=1  Score=49.10  Aligned_cols=87  Identities=11%  Similarity=0.137  Sum_probs=52.7

Q ss_pred             EEEEcCCceecceecCCC-CEEEEEEeceEEEEEecCCCCc-cchhhhhhhhHHHHHHhhhcce--eeEEeeeCCCcEEE
Q 039441          362 YVEINQGGMMVPHYNSKA-TTIVLVVEGRGRFEMGGPLSSR-WSQESQREQQEEEEEEESSREL--QKISANLSPGVVFI  437 (539)
Q Consensus       362 ~v~L~pGgm~~PHwhpnA-~ei~yV~~G~g~v~vV~p~gs~-~s~~~~~g~~~~~~~e~~~~~y--~~~~~~L~~GDV~v  437 (539)
                      .+--..|+....|..+.+ +.|..|+.|+=+.-++.|.-.. .-...-... . ....-..+.+  ..+...+.+|++++
T Consensus       300 ~lmg~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s-~-~~~~wfgd~l~~~~~~v~l~pGEtlf  377 (528)
T 3pur_A          300 CLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETS-P-DTTTWFGDIANGAVKRVVIKEGQTLL  377 (528)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHS-S-CCSCCGGGGTTTCCEEEEEETTCEEE
T ss_pred             EEEeCCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccC-C-chhhhhcccccccEEEEEECCCCEEE
Confidence            344457888888988875 4788999999999888875211 000000000 0 0000000111  12345799999999


Q ss_pred             eCCCCeEEEEcCC
Q 039441          438 IPPGHPIALVASP  450 (539)
Q Consensus       438 VPaG~~h~i~n~g  450 (539)
                      ||+|+.|+++|..
T Consensus       378 IPsGW~HaV~tle  390 (528)
T 3pur_A          378 IPAGWIHAVLTPV  390 (528)
T ss_dssp             ECTTCEEEEEEEE
T ss_pred             ecCCceEEEecCC
Confidence            9999999999973

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=87.50  E-value=3  Score=40.02  Aligned_cols=72  Identities=14%  Similarity=0.144  Sum_probs=54.0

Q ss_pred             eeCCCeeecccccC----CCcEEEEEeceEEEEEEeCC--Cc-----eeeecC--CCcEEEeCCCCeEEEEecCCCceEE
Q 039441          207 EANPSTLVVPHHSD----AETILVLLKGKGVITLVSHE--RR-----ESFNME--HGDVISVPAGTTYYLSNQDNVDRLH  273 (539)
Q Consensus       207 ~l~P~~l~lPh~~d----A~~~~yV~~G~g~i~~v~pg--~~-----~~~~v~--~GDV~~iPaG~~h~i~N~g~~e~L~  273 (539)
                      ...++.++=.||..    ..++++|+.|+....+|+-.  .+     ....|.  .+-.++||+|++|=+++..++  ..
T Consensus        50 ~S~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~--a~  127 (201)
T 4hn1_A           50 VSHRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDD--AT  127 (201)
T ss_dssp             EECTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTT--EE
T ss_pred             EcCCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCC--eE
Confidence            34789999999764    68999999999999999854  22     244554  588999999999999999753  33


Q ss_pred             EEEEecc
Q 039441          274 VAKLLQP  280 (539)
Q Consensus       274 iv~l~d~  280 (539)
                      ++...+.
T Consensus       128 ~~Y~~t~  134 (201)
T 4hn1_A          128 LVFLCSS  134 (201)
T ss_dssp             EEEEESS
T ss_pred             EEEeCCC
Confidence            4444443

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=87.50  E-value=3.4  Score=36.84  Aligned_cols=73  Identities=12%  Similarity=0.175  Sum_probs=53.5

Q ss_pred             EEEeeccCcccccccCcceeeEEEeeeCCCeeeccc---ccCCCcE--EEEEeceEEEEEEeCCCc----eeeecCCCcE
Q 039441          182 MRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPH---HSDAETI--LVLLKGKGVITLVSHERR----ESFNMEHGDV  252 (539)
Q Consensus       182 i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh---~~dA~~~--~yV~~G~g~i~~v~pg~~----~~~~v~~GDV  252 (539)
                      ++.++.|+..+                -|.+|+.+|   ...+..|  +-|++|+......+.++.    +..-+.+|+.
T Consensus        11 yk~tP~~t~~t----------------lP~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~   74 (127)
T 3bb6_A           11 TRSTPFWNKQT----------------APAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQF   74 (127)
T ss_dssp             EEECCCBCTTT----------------SCGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBE
T ss_pred             eeecCCCCccc----------------ChHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCc
Confidence            45566788776                788998888   5555555  569999988876665432    3345689999


Q ss_pred             EEeCCCCeEEEEecCCCc
Q 039441          253 ISVPAGTTYYLSNQDNVD  270 (539)
Q Consensus       253 ~~iPaG~~h~i~N~g~~e  270 (539)
                      +.||++..|.|.-..++-
T Consensus        75 ~~i~Pq~wH~Ve~lsdd~   92 (127)
T 3bb6_A           75 AVFPPEKWHNIEAMTDDT   92 (127)
T ss_dssp             EECCSSCEEEEEESSTTC
T ss_pred             eEECCCCcEEEEEcCCCE
Confidence            999999999999754333

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=87.41  E-value=0.81  Score=48.25  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=45.8

Q ss_pred             eCCCeeecccccC---CCcEEEEEeceEEEEEEeCCCc--------------------------eeeecCCCcEEEeCCC
Q 039441          208 ANPSTLVVPHHSD---AETILVLLKGKGVITLVSHERR--------------------------ESFNMEHGDVISVPAG  258 (539)
Q Consensus       208 l~P~~l~lPh~~d---A~~~~yV~~G~g~i~~v~pg~~--------------------------~~~~v~~GDV~~iPaG  258 (539)
                      |-|.+-.-|-|.|   +..|..++.|+=+.-++.|...                          ....+++||+++||+|
T Consensus       181 mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfIPsG  260 (397)
T 3kv9_A          181 MGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTG  260 (397)
T ss_dssp             EECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEECTT
T ss_pred             EcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEeCCC
Confidence            3565555554444   4568999999999999988632                          1236799999999999


Q ss_pred             CeEEEEecC
Q 039441          259 TTYYLSNQD  267 (539)
Q Consensus       259 ~~h~i~N~g  267 (539)
                      ..|+++|.+
T Consensus       261 W~H~V~nle  269 (397)
T 3kv9_A          261 WIHAVLTSQ  269 (397)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEccCCc
Confidence            999999986

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=87.09  E-value=0.66  Score=50.51  Aligned_cols=59  Identities=14%  Similarity=0.225  Sum_probs=43.6

Q ss_pred             CCCeeecccc--cCCCcEEEEEeceEEEEEEeCCCc--------------------------eeeecCCCcEEEeCCCCe
Q 039441          209 NPSTLVVPHH--SDAETILVLLKGKGVITLVSHERR--------------------------ESFNMEHGDVISVPAGTT  260 (539)
Q Consensus       209 ~P~~l~lPh~--~dA~~~~yV~~G~g~i~~v~pg~~--------------------------~~~~v~~GDV~~iPaG~~  260 (539)
                      ..+++.-.|.  ..++.|.+|+.|+=+.-++.|...                          ....+++||+++||+|..
T Consensus       304 ~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsGW~  383 (528)
T 3pur_A          304 MAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWI  383 (528)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEecCCce
Confidence            3344444442  334559999999999988877631                          024688999999999999


Q ss_pred             EEEEecC
Q 039441          261 YYLSNQD  267 (539)
Q Consensus       261 h~i~N~g  267 (539)
                      |.++|..
T Consensus       384 HaV~tle  390 (528)
T 3pur_A          384 HAVLTPV  390 (528)
T ss_dssp             EEEEEEE
T ss_pred             EEEecCC
Confidence            9999985

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=86.46  E-value=3.8  Score=39.06  Aligned_cols=79  Identities=13%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCC-CCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL-SSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~-gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      +|.+..|.||+-..||..|....+      +..++++.|. +..                   ...--.+...++|.+++
T Consensus       103 ~a~fs~L~pG~~I~pH~g~~n~~l------R~HL~L~~p~~~~~-------------------i~V~~~~~~w~eGe~~~  157 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWPHTGPTNCRL------RMHLGLVIPKEGCK-------------------IRCANETKTWEEGKVLI  157 (197)
T ss_dssp             EEEEEEECTTEEEEEECCSCTTEE------EEEEEEECCSSSEE-------------------EEETTEEECCCBTCEEE
T ss_pred             eEEEEEeCCCCCcCCeeCCCCCeE------EEEEEEEeCCCCcE-------------------EEECCEEEEeeCCcEEE
Confidence            588899999999999998765544      3445666664 211                   00001135689999999


Q ss_pred             eCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          438 IPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       438 VPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +=-.+.|...|.++++-.++.|..-
T Consensus       158 fDds~~Hev~N~~d~~RvvL~~D~~  182 (197)
T 3rcq_A          158 FDDSFEHEVWQDASSFRLIFIVDVW  182 (197)
T ss_dssp             ECTTSCEEEEECSSSCEEEEEEEEE
T ss_pred             EcCCeEEEEEECCCCCEEEEEEeee
Confidence            9999999999998887776666543

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=86.10  E-value=1.2  Score=45.26  Aligned_cols=42  Identities=17%  Similarity=0.383  Sum_probs=34.0

Q ss_pred             cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEE
Q 039441          219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLS  264 (539)
Q Consensus       219 ~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~  264 (539)
                      .++..|+.|++|+|+|+.  .  ..++.|++||.++|||++.-|..
T Consensus       267 ~~~~~il~v~~G~~~l~~--~--~~~~~l~~G~~~~vpa~~~~~~i  308 (319)
T 1qwr_A          267 DESFLICSVIEGSGLLKY--E--DKTCPLKKGDHFILPAQMPDFTI  308 (319)
T ss_dssp             CSSCEEEEEEEEEEEEEE--T--TEEEEEETTCEEEECTTCCCEEE
T ss_pred             CCccEEEEEEcCeEEEEE--C--CEEEEEcCCcEEEEeCCCceEEE
Confidence            478889999999999976  2  34679999999999999844433

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=86.07  E-value=1.4  Score=46.23  Aligned_cols=60  Identities=13%  Similarity=0.291  Sum_probs=42.8

Q ss_pred             cceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEE
Q 039441          198 IDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYL  263 (539)
Q Consensus       198 v~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i  263 (539)
                      +..+.+..+++.++...+  -.+++.|+.|++|+|+|+.  .+  .+..|++||+++|||++.-|.
T Consensus       321 ~~~F~v~~~~l~~~~~~~--~~~~~~il~v~~G~~~l~~--~~--~~~~l~~G~~~fvpa~~~~~~  380 (394)
T 2wfp_A          321 VDDFAFSLHDLALQETSI--GQHSAAILFCVEGEAVLRK--DE--QRLVLKPGESAFIGADESPVN  380 (394)
T ss_dssp             SSSCEEEEEECCSSCEEE--CCSSCEEEEEEEEEEEEEE--TT--EEEEECTTCEEEECGGGCCEE
T ss_pred             CCEEEEEEEEEcCCeEEe--cCCCcEEEEEEeceEEEEE--CC--eEEEEccCcEEEEeCCCceEE
Confidence            344556566667654433  3467899999999998765  22  568999999999999964433

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=84.94  E-value=4.5  Score=40.01  Aligned_cols=73  Identities=11%  Similarity=0.229  Sum_probs=55.2

Q ss_pred             EEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCC
Q 039441          362 YVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG  441 (539)
Q Consensus       362 ~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG  441 (539)
                      ...+.||+=+.||=|.+-..|.||++|...-  -++.|.                          ...|++|||-++-||
T Consensus        68 ~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H--~DS~Gn--------------------------~~~i~~GdvQ~MtAG  119 (256)
T 2vec_A           68 QEVLAPGAAFQPRTYPKVDILNVILDGEAEY--RDSEGN--------------------------HVQASAGEALLLSTQ  119 (256)
T ss_dssp             EEEECTTCEEEEECCSSEEEEEEEEESEEEE--EETTSC--------------------------EEEEETTEEEEECCC
T ss_pred             ccccCCCCccCCcCCCCcEEEEEEEeeEEEE--EeCCCC--------------------------EEEECCCeEEEEECC
Confidence            4567888888999997777799999998654  344442                          246999999999877


Q ss_pred             C--eEEEEcCC-CCcEEEEEEeec
Q 039441          442 H--PIALVASP-NEKLLTVGFSLN  462 (539)
Q Consensus       442 ~--~h~i~n~g-ne~l~~v~F~~n  462 (539)
                      .  .|..+|.. ++++.++-+-++
T Consensus       120 ~GI~HsE~n~~~~~~l~~lQlWi~  143 (256)
T 2vec_A          120 PGVSYSEHNLSKDKPLTRMQLWLD  143 (256)
T ss_dssp             TTCCEEEEECCSSSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCceEEEEEEEEe
Confidence            5  78888864 467888866555

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=84.07  E-value=2.5  Score=42.74  Aligned_cols=83  Identities=12%  Similarity=0.086  Sum_probs=52.1

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCc--cchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR--WSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~--~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      +.++++.|.|||.+.||-.|  .+..+...|..|+-|--...+.  ..-                   .-....+++|.+
T Consensus        91 l~~vRlrL~PG~~I~~HrD~--~~l~~~~~~~~RlHIPL~Tnp~~~f~v-------------------dg~~~~m~~GE~  149 (290)
T 1e5r_A           91 LQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPLAFHSN-------------------EDTVIHMRPGEI  149 (290)
T ss_dssp             EEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTTEEEEE-------------------TTEEECCCTTEE
T ss_pred             hheEEEEeCCCCEeeCccCc--cccccccCCceEEEeeEecCCCcEEEE-------------------CCEEEecCCCCE
Confidence            36787899999999999643  3444455777666664333221  000                   012357899999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      +++=...+|+..|.++.+-..+.++.
T Consensus       150 w~~d~~~~H~v~N~g~~~RIhLv~D~  175 (290)
T 1e5r_A          150 WFLDAATVHSAVNFSEISRQSLCVDF  175 (290)
T ss_dssp             EECCTTSCEEEEESSSSCCCEEEEEE
T ss_pred             EEEcCCCeeEEEcCCCCCeEEEEEEe
Confidence            99999999999998886655554454

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=84.02  E-value=6.1  Score=33.46  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=55.8

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +-......|.||-   -++++.+.|++=|+.|...+.+-....                           ...+.+|+-|
T Consensus        22 G~~~TvGVm~pGe---ytF~T~~~E~M~vvsG~~~V~lpg~~e---------------------------w~~~~aGesF   71 (94)
T 2oyz_A           22 GQDVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKRVGEAD---------------------------WTTYSSGESF   71 (94)
T ss_dssp             TEEEEEEEECSEE---EEEEESSCEEEEEEESEEEEEETTCSS---------------------------CEEEETTCEE
T ss_pred             CCCEEEEEEeceE---EEEcCCCeEEEEEEEeEEEEEcCCCCc---------------------------CEEECCCCEE
Confidence            4566677788885   478899999999999999887765431                           2457999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEE
Q 039441          437 IIPPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F  459 (539)
                      .||++.-+-+...  +...++|.
T Consensus        72 ~Vpans~F~l~v~--~~~~YlC~   92 (94)
T 2oyz_A           72 DVEGNSSFELQVK--DATAYLCE   92 (94)
T ss_dssp             EECSSEEEEEEES--SCEEEEEE
T ss_pred             EECCCCEEEEEEc--ccEeEEEE
Confidence            9999999888775  55888874

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A

Probab=84.02  E-value=3.8  Score=39.24  Aligned_cols=98  Identities=15%  Similarity=0.164  Sum_probs=56.7

Q ss_pred             EEEEEEcCCceecceecCCCC--EEEEEEe--ceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          360 VTYVEINQGGMMVPHYNSKAT--TIVLVVE--GRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       360 va~v~L~pGgm~~PHwhpnA~--ei~yV~~--G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      +=.+...+|+...+|.|+++.  -+.||--  +.|.+.+..|.....-.....+..    ......  ......-++||+
T Consensus       105 ~W~~~~~~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~----~~~~~~--~~~~i~P~~G~l  178 (216)
T 2rg4_A          105 IWINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKG----AREELR--TFRSVAPKVGDV  178 (216)
T ss_dssp             EEEEEECTTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCC----SCGGGC--SEEEECCCTTEE
T ss_pred             EEEEEcCCCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCccccc----CcccCC--CeeEecCCCCeE
Confidence            455667899999999998753  3445543  346666666632100000000000    000000  112456799999


Q ss_pred             EEeCCCCeEEEEcC-CCCcEEEEEEeecC
Q 039441          436 FIIPPGHPIALVAS-PNEKLLTVGFSLNA  463 (539)
Q Consensus       436 ~vVPaG~~h~i~n~-gne~l~~v~F~~na  463 (539)
                      +++|.-++|.+.-. ++++-..|+|....
T Consensus       179 vlFpS~l~H~V~p~~~~~~RiSIsFN~~~  207 (216)
T 2rg4_A          179 LLWESWLRHEVPMNMAEEDRISVSFNYAW  207 (216)
T ss_dssp             EEEETTSCEEECCCCSSSCEEEEEEEEEC
T ss_pred             EEECCCCEEeccCCCCCCCEEEEEEEeec
Confidence            99999999998764 34567777876553

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=83.62  E-value=2.1  Score=43.28  Aligned_cols=58  Identities=22%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             ceeeEEEeeeCCCeeecccccCCC-cEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEE
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAE-TILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLS  264 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~-~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~  264 (539)
                      ..+.+..+++.+ ...+..  ++. .|+.|++| |+|+.  .+  .+..|++||+++|||++.-|..
T Consensus       228 ~~F~v~~~~~~~-~~~~~~--~~~~~il~v~~G-~~i~~--~~--~~~~l~~G~~~~ipa~~~~~~i  286 (300)
T 1zx5_A          228 ENFGLEVVDVTG-TAEIKT--GGVMNILYAAEG-YFILR--GK--ETADLHRGYSCLVPASTDSFTV  286 (300)
T ss_dssp             SSEEEEEEEEEE-EEEEEC--CSBCEEEEEEES-CEEEE--SS--SEEEECTTCEEEECTTCCEEEE
T ss_pred             CeEEEEEEEECC-ceEEec--CCceEEEEEccc-EEEEe--CC--eEEEEccceEEEEeCCCceEEE
Confidence            344555555564 333333  777 89999999 98876  22  4568999999999999854443

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=83.06  E-value=2.7  Score=35.61  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=44.7

Q ss_pred             eeeccc-c---cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          212 TLVVPH-H---SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       212 ~l~lPh-~---~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      |+.+|- |   .+++++.=|+.|...|-+  ||..+-..+.+||.+.|||.+-+-|.-..
T Consensus        28 GVm~pGeytF~T~~~E~M~vvsG~~~V~l--pg~~ew~~~~aGesF~Vpans~F~l~v~~   85 (94)
T 2oyz_A           28 GVMLPGEYTFGTQAPERMTVVKGALVVKR--VGEADWTTYSSGESFDVEGNSSFELQVKD   85 (94)
T ss_dssp             EEECSEEEEEEESSCEEEEEEESEEEEEE--TTCSSCEEEETTCEEEECSSEEEEEEESS
T ss_pred             EEEeceEEEEcCCCeEEEEEEEeEEEEEc--CCCCcCEEECCCCEEEECCCCEEEEEEcc
Confidence            345555 3   689999999999987766  88888889999999999999998887653

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=82.99  E-value=12  Score=37.13  Aligned_cols=100  Identities=15%  Similarity=0.233  Sum_probs=59.1

Q ss_pred             CCCceeecC--ccceeEecCCceEEEee-ccCcccccccCcceeeEEEeeeCCCee-ecccccCCCcEEEEEeceEEEEE
Q 039441          161 NNPYYFHSQ--RFRYRVRSDSGHMRVLQ-RFSQKSHLLRGIDNYRLAILEANPSTL-VVPHHSDAETILVLLKGKGVITL  236 (539)
Q Consensus       161 ~~py~f~~~--~f~~~v~se~G~i~vl~-~f~~~s~~l~gv~~~Rl~il~l~P~~l-~lPh~~dA~~~~yV~~G~g~i~~  236 (539)
                      ..|.|-...  .+ +.+..+++.++++- .++...-.+.--....+.-++|+|++- .+|--.+-..++||++|++.|+ 
T Consensus       125 ~~P~y~~~~~~~i-p~~~~~g~~~rviaG~~~g~~~p~~~~~~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v~-  202 (277)
T 2p17_A          125 TEPRYQNLRSKDM-PVRKEEGATIRVFSGSSKGVKAPTKNIVPVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVFG-  202 (277)
T ss_dssp             CCCEEEEECGGGS-CEEEETTEEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEET-
T ss_pred             CCCcceeeccccC-CeeeeCCeEEEEEEcCccCCCCceecCCCCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEEC-
Confidence            345554432  23 33344566677654 233322122222344555566799874 4554445568999999997763 


Q ss_pred             EeCCCceeeecCCCcEEEeCC-C----CeEEEEecC
Q 039441          237 VSHERRESFNMEHGDVISVPA-G----TTYYLSNQD  267 (539)
Q Consensus       237 v~pg~~~~~~v~~GDV~~iPa-G----~~h~i~N~g  267 (539)
                         +.  ...|.+||.++|.. |    ...-|.+..
T Consensus       203 ---g~--~~~l~~~d~~~~~~~~~~~~~~l~l~a~~  233 (277)
T 2p17_A          203 ---AD--NIEGKAGQALFFSRHNRGEETELNVTARE  233 (277)
T ss_dssp             ---TT--TEEEETTEEEEECCCCTTCEEEEEEEESS
T ss_pred             ---CC--ceEeCCCcEEEEcCCCCCccceEEEEeCC
Confidence               21  23699999999986 7    667777754

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=82.82  E-value=24  Score=32.38  Aligned_cols=101  Identities=11%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             CCceEEEeCCcccccccccceeEEEEEEcCCceecceecC--CCCEEEEEEece-EEEEEecCCCCccchhhhhhhhHHH
Q 039441          338 NFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNS--KATTIVLVVEGR-GRFEMGGPLSSRWSQESQREQQEEE  414 (539)
Q Consensus       338 ~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhp--nA~ei~yV~~G~-g~v~vV~p~gs~~s~~~~~g~~~~~  414 (539)
                      .+|...+........-+. -.++.+.-|++|...  |||-  +|+||-|...|. ..+-++.+++..             
T Consensus        21 EGG~yrEt~Rs~~~~~R~-~~TaIYfLL~~g~~S--~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~-------------   84 (154)
T 1znp_A           21 EGGFYHQTFRDKAGGERG-HSTAIYYLLEKGVRS--HWHRVTDAVEVWHYYAGAPIALHLSQDGREV-------------   84 (154)
T ss_dssp             TSSEEEEEEECSSSTTTC-SCEEEEEEEESSCCE--EEEEETTSCEEEEEEEESCEEEEEESSSSCC-------------
T ss_pred             CCccEEEEEeCCCCCCCc-ceeEEEEEecCCCCC--cceeccCCCEEEEeECCCCEEEEEEcCCCcE-------------
Confidence            466655554332222222 245566668888876  5554  599999999997 677788887632             


Q ss_pred             HHHhhhcceeeEEeeeCCCcE--EEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          415 EEEESSRELQKISANLSPGVV--FIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       415 ~~e~~~~~y~~~~~~L~~GDV--~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                             .-.++-.+|..|++  +|||+|+...-...+  +..+|+-.+.+
T Consensus        85 -------~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~g--~~~LVsCtVaP  126 (154)
T 1znp_A           85 -------QTFTLGPAILEGERPQVIVPANCWQSAESLG--DFTLVGCTVSP  126 (154)
T ss_dssp             -------EEEEESSCTTTTEESEEEECTTCEEEEEESS--SEEEEEEEESS
T ss_pred             -------EEEEeCCCcccCcccEEEEcCCEEEEeeECC--CeEEEEEEecC
Confidence                   00234456778875  899999988876553  57777656565

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=82.63  E-value=8  Score=34.08  Aligned_cols=76  Identities=12%  Similarity=0.161  Sum_probs=58.4

Q ss_pred             eEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEE--EEeceEEEEEEeCCCc----eeeecCCCcEEE
Q 039441          181 HMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILV--LLKGKGVITLVSHERR----ESFNMEHGDVIS  254 (539)
Q Consensus       181 ~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~y--V~~G~g~i~~v~pg~~----~~~~v~~GDV~~  254 (539)
                      .++.++.|+..+                -|.+|+..|-..+.-|+-  |++|+.+......++.    +..-+.+|+...
T Consensus        12 ~Yk~tP~~t~~t----------------lP~~l~~~HnTK~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~   75 (119)
T 3dl3_A           12 IQRSTPFFTKDN----------------VPEALLTHHNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFAT   75 (119)
T ss_dssp             EEEECCCBCTTT----------------CCHHHHSSBCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEE
T ss_pred             EeccCCCCChhh----------------chHHHHhccCCCCcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCce
Confidence            345567788876                688888889888888875  8999998887765432    445778999999


Q ss_pred             eCCCCeEEEEecCCCceEE
Q 039441          255 VPAGTTYYLSNQDNVDRLH  273 (539)
Q Consensus       255 iPaG~~h~i~N~g~~e~L~  273 (539)
                      ||+.+.|.|.-.| +-.+.
T Consensus        76 i~Pq~wHrVe~sd-D~~f~   93 (119)
T 3dl3_A           76 SPPQYWHRIELSD-DAQFN   93 (119)
T ss_dssp             ECTTCEEEEEECT-TCEEE
T ss_pred             eCCCceEEEEECC-CeEEE
Confidence            9999999999554 34443

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=81.02  E-value=6.2  Score=35.19  Aligned_cols=74  Identities=14%  Similarity=0.161  Sum_probs=51.9

Q ss_pred             CCceecce---e-cCCCCEEEEEEeceEEEEEecCCCC-ccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCC
Q 039441          367 QGGMMVPH---Y-NSKATTIVLVVEGRGRFEMGGPLSS-RWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG  441 (539)
Q Consensus       367 pGgm~~PH---w-hpnA~ei~yV~~G~g~v~vV~p~gs-~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG  441 (539)
                      |++++.+|   . ++..-..+-|++|+..+-.+...+. .-                     ... --+.+|+..+||++
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~---------------------~~~-~l~~~~~~~~i~Pq   80 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEP---------------------DQV-ILIEAGQFAVFPPE   80 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSC---------------------SEE-EEEEBTBEEECCSS
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcce---------------------eEE-EEeCCCCceEECCC
Confidence            56777888   3 3334466789999999988777653 10                     011 23579999999999


Q ss_pred             CeEEEEcCCCCcEEE-EEEeecC
Q 039441          442 HPIALVASPNEKLLT-VGFSLNA  463 (539)
Q Consensus       442 ~~h~i~n~gne~l~~-v~F~~na  463 (539)
                      ..|.+....+ ++.| |.|...+
T Consensus        81 ~wH~Ve~lsd-d~~f~leFyc~~  102 (127)
T 3bb6_A           81 KWHNIEAMTD-DTYFNIDFFVAP  102 (127)
T ss_dssp             CEEEEEESST-TCEEEEEEEECH
T ss_pred             CcEEEEEcCC-CEEEEEEEEeCC
Confidence            9999998534 5666 7776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	539
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	2e-40
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	2e-09
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	9e-37
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	2e-20
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	1e-36
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	2e-22
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	5e-36
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	3e-18
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	3e-35
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	2e-12
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	2e-34
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	2e-22
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	7e-32
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	1e-10
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	1e-29
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	2e-27
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	1e-07
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	4e-23
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	1e-05
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	5e-20
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	8e-12
d1fxza1	239	b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe	9e-16
d1fxza1	239	b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe	5e-13
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	2e-14
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	0.001
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	3e-14
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	5e-06
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	5e-08
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	2e-04
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	6e-08
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	5e-04
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	9e-07
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	7e-04
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	3e-06
d2f4pa1	134	b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Th	8e-04
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	0.001
d1zrra1	179	b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebs	0.001
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	0.002

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score =  142 bits (359), Expect = 2e-40
 Identities = 70/188 (37%), Positives = 113/188 (60%), Gaps = 14/188 (7%)

Query: 325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
           PFNL SR PIY+N  G+ FE TP+   QL+++D  ++ V++N+G + +PH+NSKA  +++
Sbjct: 9   PFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLV 68

Query: 385 VVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI 444
           + EG    E+ G           +EQQ+ +++EE   E++K  A LS   +F+IP G+P+
Sbjct: 69  INEGEANIELVGI----------KEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPV 118

Query: 445 ALVASPNEKLLTVGFSLNARNNQRNF-LAGKINIMNQVERETMEVAFNVPARLIERVFGT 503
            + A+ +       F +NA NNQRNF    K N+++Q+  +  E+AF   A+ IE +   
Sbjct: 119 VVNATSDLNF--FAFGINAENNQRNFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIK- 175

Query: 504 NPKESYFV 511
           +  ESYFV
Sbjct: 176 SQSESYFV 183

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 26/148 (17%)

Query: 160 ENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPH-H 218
           E+ P+   S+   Y   +  G +  +    +K+  LR + +  L++++ N   L +PH +
Sbjct: 6   EDKPFNLRSRDPIYS--NKLGKLFEIT--PEKNPQLRDL-DVFLSVVDMNEGALFLPHFN 60

Query: 219 SDAETILVLLKGKGVITLV---------------SHERRESFNMEHGDVISVPAGTTYYL 263
           S A  +LV+ +G+  I LV                  R+    +   D+  +PAG    +
Sbjct: 61  SKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVV 120

Query: 264 SNQDNVDRLHVAKLLQPVNTPGQFRVQQ 291
           +   +++          +N     R   
Sbjct: 121 NATSDLNFFAFG-----INAENNQRNFL 143

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score =  131 bits (332), Expect = 9e-37
 Identities = 52/131 (39%), Positives = 89/131 (67%), Gaps = 1/131 (0%)

Query: 159 EENNPYYF-HSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPH 217
           +ENNP+YF  S  F+    + +G +R+LQRF+++S  L  + +YR+   ++ P+T+++PH
Sbjct: 1   DENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH 60

Query: 218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL 277
           H+DA+ +L +L G+ ++TLV+++ R+S+N+  GD   +PAGTTYYL N  +   L +  L
Sbjct: 61  HADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWL 120

Query: 278 LQPVNTPGQFR 288
             PVN PG++ 
Sbjct: 121 AIPVNKPGRYD 131

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 86.1 bits (213), Expect = 2e-20
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 39/191 (20%)

Query: 325 PFNLLSR---KPIYNNNFGRF--FEATPKDYQQLQEI-DAGVTYVEINQGGMMVPHYNSK 378
           PF   S    + ++ N  GR    +   K   QL+ + D  +   +     +++PH+ + 
Sbjct: 5   PFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHH-AD 63

Query: 379 ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII 438
           A  ++ V+ GR    +                              + S NL PG    I
Sbjct: 64  ADFLLFVLSGRAILTLVNND-------------------------DRDSYNLHPGDAQRI 98

Query: 439 PPGHPIALVA---SPNEKLLTVGFSLNARNNQRNFLAGKI----NIMNQVERETMEVAFN 491
           P G    LV      N K++ +   +N      +F         + +       +E +F+
Sbjct: 99  PAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFH 158

Query: 492 VPARLIERVFG 502
                I RV  
Sbjct: 159 SEFEEINRVLF 169

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score =  131 bits (331), Expect = 1e-36
 Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 4/153 (2%)

Query: 161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD 220
           NNPY F S +F    ++  G +R+LQRF++ +  L  + +YR+    + P+TL++PHHSD
Sbjct: 1   NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSD 60

Query: 221 AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP 280
           ++ ++++L+G+ ++ LV+ + R+++ ++ GD I + AGT +YL N DN   L + K    
Sbjct: 61  SDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAIT 120

Query: 281 VNTPGQFRV----QQRQQGTIKRASQEQLKALS 309
              PG          ++  +   A  +     S
Sbjct: 121 FRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEAS 153

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 92.3 bits (229), Expect = 2e-22
 Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 36/200 (18%)

Query: 325 PFNLLSRKPIYNNNFGRF--FEATPKDYQQLQEIDA-GVTYVEINQGGMMVPHYNSKATT 381
            F       ++ N  G     +   +D ++L+ +    V         +++PH+ S +  
Sbjct: 5   LFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDL 63

Query: 382 IVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG 441
           +VLV+EG+    +  P                           + +  L  G    I  G
Sbjct: 64  LVLVLEGQAILVLVNPD-------------------------GRDTYKLDQGDAIKIQAG 98

Query: 442 HPIALVA---SPNEKLLTVGFSLNARNNQRNFLAG----KINIMNQVERETMEVAFNVPA 494
            P  L+    + N ++L    +        +F         + ++   +  +E +++ P 
Sbjct: 99  TPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPY 158

Query: 495 RLIERVFGTNPKESYFVAGP 514
             IE+      +E   V  P
Sbjct: 159 DEIEQTLLQEEQEGVIVKMP 178

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score =  131 bits (330), Expect = 5e-36
 Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 47/203 (23%)

Query: 162 NPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDA 221
           NP++F+S+RF+   ++  GH+RVLQRF+++S  L+ + +YR+    + P+TL++PHH+DA
Sbjct: 1   NPFHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADA 60

Query: 222 ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV 281
           + ++V+L G  ++TLV+++ R+S+N++ GD + VPAGTTYY+ N DN + L +  L  PV
Sbjct: 61  DYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPV 120

Query: 282 NTPGQFR-----------------------------------------------VQQRQQ 294
           N PG+F                                                 ++ Q+
Sbjct: 121 NKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQE 180

Query: 295 GTIKRASQEQLKALSHHASSRRR 317
             I   S++Q++ LS HA S  R
Sbjct: 181 SVIVEISKKQIRELSKHAKSSSR 203

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 81.1 bits (200), Expect = 3e-18
 Identities = 27/203 (13%), Positives = 66/203 (32%), Gaps = 37/203 (18%)

Query: 326 FNLLSRKPIYNNNFGRFFEATPKDYQ--QLQEIDA-GVTYVEINQGGMMVPHYNSKATTI 382
           FN    + ++ N +G        + +  QLQ +    +         +++PH+ + A  +
Sbjct: 5   FNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHH-ADADYL 63

Query: 383 VLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGH 442
           ++++ G     +                              + S NL  G    +P G 
Sbjct: 64  IVILNGTAILTLVNN-------------------------DDRDSYNLQSGDALRVPAGT 98

Query: 443 PIALVA---SPNEKLLTVGFSLNARNNQRNFLAG----KINIMNQVERETMEVAFNVPAR 495
              +V      N +++T+   +N      +F       + + +    +  +E +++    
Sbjct: 99  TYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFE 158

Query: 496 LIERVFGTNPKESYFVAGPEEQQ 518
            I +V     +E         Q+
Sbjct: 159 EINKVLF-GREEGQQQGEERLQE 180

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score =  126 bits (318), Expect = 2e-34
 Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 45/199 (22%)

Query: 161 NNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHS 219
           +NP+YF+S   +    ++  GH+RVLQRF Q+S  L+ +++YRL    + P TL++P  +
Sbjct: 1   DNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA 60

Query: 220 DAETILVLLKGKGVITLVSHERRESF------NMEHGDVISVPAGTTYYLSNQDNVDRLH 273
           DAE +LV+  G  ++ LV  + R  +      N    D   +PAGT +YL N D  + L 
Sbjct: 61  DAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLR 120

Query: 274 VAKLLQPVNTPGQFRV--------------------------------------QQRQQG 295
           + +L  PVN P                                           + +Q+G
Sbjct: 121 IIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEG 180

Query: 296 TIKRASQEQLKALSHHASS 314
            I     EQ+K LS HA S
Sbjct: 181 VIVNIDSEQIKELSKHAKS 199

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 92.7 bits (230), Expect = 2e-22
 Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 31/202 (15%)

Query: 330 SRKPIYNNNFGRFFEATPKD--YQQLQEIDA-GVTYVEINQGGMMVPHYNSKATTIVLVV 386
           S   ++ N +G        D   ++LQ ++   +         +++P   + A  +++V 
Sbjct: 11  SWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQ-ADAELLLVVR 69

Query: 387 EGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL 446
            G     +  P   R                           N        IP G    L
Sbjct: 70  SGSAILVLVKPDDRREYFFLTS-------------------DNPIFSDHQKIPAGTIFYL 110

Query: 447 V-ASPNEKL--LTVGFSLNARNNQRNFLAG---KINIMNQVERETMEVAFNVPARLIERV 500
           V   P E L  + +   +N       FL+    + + + +  +  +E +FN     I RV
Sbjct: 111 VNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRV 170

Query: 501 FGT--NPKESYFVAGPEEQQQR 520
                  +E   V    EQ + 
Sbjct: 171 LFEEEGQQEGVIVNIDSEQIKE 192

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score =  118 bits (296), Expect = 7e-32
 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 32/183 (17%)

Query: 335 YNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEM 394
             N FG   E T         ++  ++ +E+ +G + VPHY SKA  I++V EG    E+
Sbjct: 3   IGNEFGNLTERTDNS------LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVEL 56

Query: 395 GGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKL 454
            GP                 +  + + E +   A LS   VF+IP  +P+A+ A+ N   
Sbjct: 57  VGP-----------------KGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNF 99

Query: 455 LTVGFSLNARNNQRNFLAGKIN------IMNQVERETMEVAFNVPARLIERVFGTNPKES 508
              GF +NA NN RN LAGK +            ++ + + F+     + ++       S
Sbjct: 100 --TGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLIN-KQSGS 156

Query: 509 YFV 511
           YFV
Sbjct: 157 YFV 159

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 14/113 (12%)

Query: 187 RFSQKSHLLRGIDNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRES- 244
            F   +       N  ++ +E     L VPH +S A  ILV+ +G+  + LV  +  +  
Sbjct: 6   EFGNLTERTDNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKET 65

Query: 245 -------FNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQ 290
                    +   DV  +PA     +    NV+          +N     R  
Sbjct: 66  LEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGF-----GINANNNNRNL 113

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score =  117 bits (295), Expect = 1e-29
 Identities = 36/346 (10%), Positives = 92/346 (26%), Gaps = 58/346 (16%)

Query: 181 HMRVLQRFS---QKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLV 237
           H R+ +           L   +N     +   P  +   H         ++ G   +T+V
Sbjct: 49  HNRLEKGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIV 108

Query: 238 SHE-RRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGT 296
             + R    ++  GD+   P+G  + +   +      +       +    F++      T
Sbjct: 109 DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHT 168

Query: 297 ---------------IKRASQEQL--------KALSHHASSRRRHGRGSTAPFNLLSRKP 333
                          I     ++          +L                 + LL ++P
Sbjct: 169 PKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEP 228

Query: 334 IYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFE 393
           I  +  G+ + A   +++  + I + +  V +  G M   H++         + G+ R  
Sbjct: 229 I-ESEGGKVYIADSTNFKVSKTIASAL--VTVEPGAMRELHWHPNTHEWQYYISGKARMT 285

Query: 394 MGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEK 453
           +        +                             G V  +P      +    +E 
Sbjct: 286 VFASDGHARTFN------------------------YQAGDVGYVPFAMGHYVENIGDEP 321

Query: 454 LLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIER 499
           L+ +        +           +  +    ++   ++     + 
Sbjct: 322 LVFLEIF----KDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDV 363

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score =  106 bits (265), Expect = 2e-27
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 26/186 (13%)

Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
           S   IYN   G    AT  D+  L  +     +  + +  M VPHYN  A +I+  + GR
Sbjct: 14  SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGR 73

Query: 390 GRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS 449
              ++                             +     L  G V I+P    +A  + 
Sbjct: 74  ALIQVVNC-----------------------NGERVFDGELQEGRVLIVPQNFVVAARSQ 110

Query: 450 PNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESY 509
            ++    V F           LAG  +++N +  E ++  FN+ ++   ++   NP   +
Sbjct: 111 -SDNFEYVSF-KTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNP-FKF 167

Query: 510 FVAGPE 515
            V   E
Sbjct: 168 LVPPQE 173

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 189 SQKSHLLRGIDNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFN- 246
           S     L  +            + + VPH + +A +I+  L G+ +I +V+      F+ 
Sbjct: 31  SLDFPALSWLR-LSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDG 89

Query: 247 -MEHGDVISVPAGTTYYLSNQDN 268
            ++ G V+ VP        +Q +
Sbjct: 90  ELQEGRVLIVPQNFVVAARSQSD 112

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 94.3 bits (234), Expect = 4e-23
 Identities = 26/183 (14%), Positives = 53/183 (28%), Gaps = 30/183 (16%)

Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
           SR   YN   GR           L++      YV + + G+  PH+N  A +++ V  G+
Sbjct: 19  SRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGK 78

Query: 390 GRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS 449
           GR  +                          +        L  G + ++P    +A    
Sbjct: 79  GRVRVVNC-----------------------QGNAVFDGELRRGQLLVVPQNFVVAEQGG 115

Query: 450 PNEKLLTVGFSLNARNNQRNF-LAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKES 508
                   G          N   +   ++   +  E +  ++N+    + ++        
Sbjct: 116 EQ------GLEYVVFKTHHNAVSSYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGP 169

Query: 509 YFV 511
              
Sbjct: 170 LVN 172

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 189 SQKSHLLRGIDNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFN- 246
           S     LR         +    + +  PH + +A +++ + +GKG + +V+ +    F+ 
Sbjct: 36  SLTLPALRQFG-LSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDG 94

Query: 247 -MEHGDVISVPAGTTYYLSNQDN 268
            +  G ++ VP          + 
Sbjct: 95  ELRRGQLLVVPQNFVVAEQGGEQ 117

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 87.2 bits (216), Expect = 5e-20
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 15/205 (7%)

Query: 327 NLLSRKPIYNNNF-GRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLV 385
           NL + +P +     G   E     + +LQ     V+   +N+ G+ +P Y S    +++V
Sbjct: 7   NLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSY-SPYPQMIIV 65

Query: 386 VEGRGRFEMGGPLSSRWSQES-QREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI 444
           V+G+G      P      ++  Q+  +     ++  ++  +   + + G V +IPPG P 
Sbjct: 66  VQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPY 125

Query: 445 ALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTN 504
               + +E +  V  SL   +N            NQ+++            +        
Sbjct: 126 WTYNTGDEPV--VAISLLDTSNFN----------NQLDQNPRVFYLAGNPDIEHPETMQQ 173

Query: 505 PKESYFVAGPEEQQQRDEAGSGKSL 529
            ++     G ++ Q + +   G S+
Sbjct: 174 QQQQKSHGGRKQGQHQQQEEEGGSV 198

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 63.0 bits (153), Expect = 8e-12
 Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 35/178 (19%)

Query: 173 YRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKG 230
           +RV S+ G   +++ ++ +   L+  G+   +  +   N + L +P +S    ++++++G
Sbjct: 15  HRVESEGG---LIETWNSQHPELQCAGVTVSKRTL---NRNGLHLPSYSPYPQMIIVVQG 68

Query: 231 KGVITLVSHERRESFN--------------------------MEHGDVISVPAGTTYYLS 264
           KG I        E+F                              GDV+ +P G  Y+  
Sbjct: 69  KGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTY 128

Query: 265 NQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGS 322
           N  +   +    LL   N   Q     R          E  + +      +   GR  
Sbjct: 129 NTGDEP-VVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQ 185

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 74.5 bits (183), Expect = 9e-16
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 45/222 (20%)

Query: 326 FNLLSRKPIYNNNF-GRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
             L + KP       G   E    + +  Q     ++   +N+  +  P Y +     + 
Sbjct: 6   QKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSY-TNGPQEIY 64

Query: 385 VVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI 444
           + +G+G F M  P      +E Q  Q ++  +    ++  +   N   G +  +P G   
Sbjct: 65  IQQGKGIFGMIYPGCPSTFEEPQ--QPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAW 122

Query: 445 ALVASPNEKLLTVGFSLNARNNQRNFLAGKI----------------------------- 475
            +  + +  +  V  S+   N+  N L                                 
Sbjct: 123 WMYNNEDTPV--VAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGK 180

Query: 476 ----------NIMNQVERETMEVAFNVPARLIERVFGTNPKE 507
                     +I++    E +E AF+V  ++ + + G N  E
Sbjct: 181 HQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGE 222

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 66.5 bits (162), Expect = 5e-13
 Identities = 26/180 (14%), Positives = 67/180 (37%), Gaps = 32/180 (17%)

Query: 168 SQRFRYRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETIL 225
           + +   R+ S+ G   +++ ++  +   +  G+   R  +   N + L  P +++    +
Sbjct: 10  ALKPDNRIESEGG---LIETWNPNNKPFQCAGVALSRCTL---NRNALRRPSYTNGPQEI 63

Query: 226 VLLKGKGVITLV-----------------------SHERRESFNMEHGDVISVPAGTTYY 262
            + +GKG+  ++                           ++ +N   GD+I+VP G  ++
Sbjct: 64  YIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWW 123

Query: 263 LSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGS 322
           + N ++   +    ++   +   Q     R+        QE LK        + + G+  
Sbjct: 124 MYNNEDTP-VVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQ 182

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 72.2 bits (176), Expect = 2e-14
 Identities = 43/313 (13%), Positives = 78/313 (24%), Gaps = 75/313 (23%)

Query: 206 LEANPSTLVVPH-HSDAETILVLLKGKGVITLV-SHERRESFNMEHGDVISVPAGTTYYL 263
              + +  V+PH H          KG   +     +E +++  +  GD  SVP   T+  
Sbjct: 53  APHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTF 112

Query: 264 SNQDNVDRLHV-------------------------------------AKLLQPVNTPGQ 286
             QD    +                                             ++T   
Sbjct: 113 QIQDPDTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQS 172

Query: 287 FRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGST-APFNL-LSRKPIYNNNFGRFFE 344
           F V      T +  +       +    +       +   P+ +     P Y N+   +  
Sbjct: 173 FDVYAELSFTPRTDTVNGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQI 232

Query: 345 ATPKDYQ---QLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR 401
             P       Q          +      + VP ++        V EGR   ++G      
Sbjct: 233 VAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGD----- 287

Query: 402 WSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA-SPNEKLLTVGFS 460
                    +                  L  G V  IP G      + +   K+L    S
Sbjct: 288 -----YAATE------------------LGSGDVAFIPGGVEFKYYSEAYFSKVL--FVS 322

Query: 461 LNARNNQRNFLAG 473
             +    +N + G
Sbjct: 323 SGSDGLDQNLVNG 335

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 14/142 (9%), Positives = 40/142 (28%), Gaps = 10/142 (7%)

Query: 138 RRREKEGKFNPSSNWQGSEEE---EENNPYYFHSQ-RFRYRVRSDSGHM-RVLQRFSQKS 192
           R     G    ++ W            +PY+  +    +Y        +       +Q  
Sbjct: 184 RTDTVNGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQ 243

Query: 193 HLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDV 252
                +    ++   +  +               + +G+ V+ +       +  +  GDV
Sbjct: 244 DTNYTLSTISMSTTPSTVTVP--TWSFPGACAFQVQEGRVVVQI---GDYAATELGSGDV 298

Query: 253 ISVPAGTTYYLSNQDNVDRLHV 274
             +P G  +   ++    ++  
Sbjct: 299 AFIPGGVEFKYYSEAYFSKVLF 320

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 69.6 bits (170), Expect = 3e-14
 Identities = 25/173 (14%), Positives = 46/173 (26%), Gaps = 24/173 (13%)

Query: 335 YNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEM 394
              N     E    ++     +   +  V+   GG   PH + +AT I +V++G     +
Sbjct: 49  STPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGI 108

Query: 395 GGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKL 454
            G                           +  S  +  G  F+IP G           + 
Sbjct: 109 LGS---------------------LDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEA 147

Query: 455 LTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERV---FGTN 504
             V    +                  +    +  A  V A ++E +   F   
Sbjct: 148 YMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGG 200

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 210 PSTLVVPH-HSDAETILVLLKGKGVITLVSH----ERRESFNMEHGDVISVPAGTTYYLS 264
           P     PH H  A  I +++KG+ ++ ++       +  S  +  G+   +P G  ++  
Sbjct: 81  PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQF 140

Query: 265 NQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIK 298
           N    +   V         PG   V     G+  
Sbjct: 141 NVGKTEAYMVVSFNSQ--NPGIVFVPLTLFGSDP 172

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (125), Expect = 5e-08
 Identities = 38/274 (13%), Positives = 72/274 (26%), Gaps = 57/274 (20%)

Query: 203 LAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYY 262
             +    P  +   H  +   +  +++GKG  T V  ER     M  GD I  P    + 
Sbjct: 56  AGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTP---MNEGDFILTPQWRWHD 112

Query: 263 LSNQDNVD-------------------RLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQE 303
             N  +                          +  QPV       + +     +    Q 
Sbjct: 113 HGNPGDEPVIWLDGLDLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQT 172

Query: 304 QLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYV 363
              +         R+ R      +L         +  +     P           G    
Sbjct: 173 GNSS----PIFNYRYDRSREVLHDLTRLGDADEWDGYKMRYVNPVTGGYPMPSM-GAFLQ 227

Query: 364 EINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL 423
            + +G        +  +TI  VVEG G+  +G                            
Sbjct: 228 LLPKGFASRVARTT-DSTIYHVVEGSGQVIIGN--------------------------- 259

Query: 424 QKISANLSPGVVFIIPPGHPIALVASPNEKLLTV 457
              + + S   +F++P  H ++   + +  L + 
Sbjct: 260 --ETFSFSAKDIFVVPTWHGVSFQTTQDSVLFSF 291

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 9/92 (9%), Positives = 23/92 (25%), Gaps = 4/92 (4%)

Query: 183 RVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR 242
               R+         + +    +             +   TI  +++G G + + +    
Sbjct: 204 GYKMRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGNET-- 261

Query: 243 ESFNMEHGDVISVPAGTTYYLSNQDNVDRLHV 274
             F+    D+  VP           +      
Sbjct: 262 --FSFSAKDIFVVPTWHGVSFQTTQDSVLFSF 291

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 52.4 bits (125), Expect = 6e-08
 Identities = 41/269 (15%), Positives = 69/269 (25%), Gaps = 65/269 (24%)

Query: 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275
            H         +++G+GV T+V+ +      M  GD++  P    +   N  +     + 
Sbjct: 102 EHRHSQNAFRFVVEGEGVWTVVNGDP---VRMSRGDLLLTPGWCFHGHMNDTDQPMAWID 158

Query: 276 KLLQPVNT---PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRK 332
            L  P +     G F     +       +  + + L  H   R   G  +T         
Sbjct: 159 GLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVAS------ 212

Query: 333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTY------------------------VEINQG 368
           PI    +     A  +      E                                   + 
Sbjct: 213 PIGAYRWEFTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRA 272

Query: 369 GMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISA 428
           G      N   +T+  V EG G   M G                           +    
Sbjct: 273 GTETATRNEVGSTVFQVFEGAGAVVMNG---------------------------ETT-- 303

Query: 429 NLSPGVVFIIPPGHPIALVASPNEKLLTV 457
            L  G +F++P   P +L A     L   
Sbjct: 304 KLEKGDMFVVPSWVPWSLQAETQFDLFRF 332

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNV 269
             T     +    T+  + +G G + +          +E GD+  VP+   + L  +   
Sbjct: 272 AGTETATRNEVGSTVFQVFEGAGAVVMNGET----TKLEKGDMFVVPSWVPWSLQAETQF 327

Query: 270 DRLHV 274
           D    
Sbjct: 328 DLFRF 332

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.8 bits (115), Expect = 9e-07
 Identities = 48/317 (15%), Positives = 87/317 (27%), Gaps = 67/317 (21%)

Query: 169 QRFRYRVRSDSGHMRVL--QRFSQKSHLLRGIDNYRLAILEANPSTLVVPH-HSDAETIL 225
           ++  Y +RS  G   +   Q  +  ++     D + + +L          H H D    +
Sbjct: 8   EKMPYLLRSGEGERYLFGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGI 67

Query: 226 VLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG 285
           ++L GK  +TL      E + +  GD  ++PAGT +    Q +  RL            G
Sbjct: 68  LVLDGKLELTLDG----ERYLLISGDYANIPAGTPHSYRMQSHRTRLVS------YTMKG 117

Query: 286 QFRVQQRQQGTIKRASQ--------EQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNN 337
                    G     ++           +  +  A+           P        +   
Sbjct: 118 NVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTEL 177

Query: 338 NFGRFFEATPKDYQQLQEIDA----------------GVTYVEINQGGMMVPHYNSKATT 381
             G                                   V   E  +G  +V HY+   T 
Sbjct: 178 PDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTE 237

Query: 382 IVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG 441
               +EG+      G               +E +              L+PG    +P  
Sbjct: 238 TFYCLEGQMTMWTDG---------------QEIQ--------------LNPGDFLHVPAN 268

Query: 442 HPIAL-VASPNEKLLTV 457
              +  + S   K++ V
Sbjct: 269 TVHSYRLDSHYTKMVGV 285

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 11/90 (12%)

Query: 200 NYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAG 258
            + +   E      +V H H         L+G+  +        +   +  GD + VPA 
Sbjct: 213 QFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT----DGQEIQLNPGDFLHVPAN 268

Query: 259 TTYYLSNQDNVDRLHVAKLLQPVNTPGQFR 288
           T +      +  ++        V  PG F 
Sbjct: 269 TVHSYRLDSHYTKMVG------VLVPGLFE 292

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 30/265 (11%), Positives = 60/265 (22%), Gaps = 72/265 (27%)

Query: 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN------- 268
            H   A  +  +++G G  T+V   +     +   D +  P GT +     ++       
Sbjct: 100 AHRHAASALRFIMEGSGAYTIVDGHK---VELGANDFVLTPNGTWHEHGILESGTECIWQ 156

Query: 269 -------VDRLHVA------KLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSR 315
                   + L            Q  + P            +     +  K  S     +
Sbjct: 157 DGLDIPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLL--K 214

Query: 316 RRHGRGSTAPFNLLSRKP--------IYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQ 367
                   A  N              +   N              +Q +           
Sbjct: 215 YSWEPTYEALLNYAKASDGSPYDGLILRYTNPQTGGHPMLTMGASMQMLRP--------- 265

Query: 368 GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKIS 427
           G     H ++    I  V +G+G   +GG                           ++  
Sbjct: 266 GEHTKAHRHT-GNVIYNVAKGQGYSIVGG---------------------------KRF- 296

Query: 428 ANLSPGVVFIIPPGHPIALVASPNE 452
            + S   +F +P         +   
Sbjct: 297 -DWSEHDIFCVPAWTWHEHCNTQER 320

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVP 256
           G+ N ++  +   P      H      IL++ +GKG         R    ++ GDV+ +P
Sbjct: 31  GVFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARI---LKKGDVVEIP 87

Query: 257 AGTTYYLSNQDNVDRLHVA 275
               ++     + + +H+ 
Sbjct: 88  PNVVHWHGAAPDEELVHIG 106

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 21/182 (11%), Positives = 42/182 (23%), Gaps = 41/182 (22%)

Query: 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ-DNVDRLHV 274
                 ET L ++ G            ++F +  G  +  P G+     N      ++ +
Sbjct: 68  FGGEGIETFLYVISGNITAKAEG----KTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFL 123

Query: 275 AKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPI 334
                          ++R               +S +AS   R          LL   P 
Sbjct: 124 --------------YKRRYV----PVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPK 165

Query: 335 YNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEM 394
                                 D  +  +    G                ++ G+G + +
Sbjct: 166 ELGF------------------DMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL 207

Query: 395 GG 396
             
Sbjct: 208 DN 209

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]} Length = 179

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268
            H    + +   ++G G+  L   +       E  D+ISVPA T ++      
Sbjct: 95  EHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSE 147

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 31/241 (12%), Positives = 65/241 (26%), Gaps = 69/241 (28%)

Query: 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVD-RLH- 273
               +AE +L +++G+  +TL    + +   M+ G    +P G  Y + N      R H 
Sbjct: 83  EQDPNAEAVLFVVEGELSLTL----QGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHW 138

Query: 274 VAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKP 333
           + K  Q V+                  +++ ++ L    +  R          ++     
Sbjct: 139 IRKHYQKVDGVPLPEAFV--------TNEQDIQPLVMPDTEGRWSTTRFVDMSDMRH--- 187

Query: 334 IYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFE 393
                                  D  V  V    GG++           + V+EG+  + 
Sbjct: 188 -----------------------DMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYR 224

Query: 394 MGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEK 453
           +              +  E                 +  G    +    P A  +    +
Sbjct: 225 LNQ------------DWVE-----------------VEAGDFMWLRAFCPQACYSGGPGR 255

Query: 454 L 454
            
Sbjct: 256 F 256

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	539
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	100.0
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	100.0
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	100.0
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	100.0
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	100.0
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	100.0
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.98
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.97
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.97
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.97
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.97
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.97
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	99.96
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.96
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.96
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.96
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.91
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.88
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	99.84
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.82
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.8
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	99.78
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.77
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.76
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.76
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	99.75
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	99.72
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.71
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.71
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	99.7
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.7
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	99.55
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.25
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.25
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.21
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.14
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.14
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.11
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.08
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.06
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.03
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.01
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.0
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	98.98
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.9
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	98.89
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	98.88
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.88
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	98.82
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.82
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.79
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.76
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.74
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.73
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.7
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.69
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.66
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.64
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.63
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.39
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.37
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.32
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.32
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.3
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.14
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.92
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.82
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.62
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	97.54
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	97.5
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.4
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.38
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	97.23
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	97.06
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	96.96
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	96.84
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	96.8
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	96.79
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	96.6
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	96.56
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.49
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	96.38
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.26
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	95.96
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	95.89
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	95.72
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	95.62
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	95.46
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	95.4
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	95.15
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	95.12
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	95.08
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	94.28
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	94.0
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	93.92
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	93.86
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	93.68
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	93.63
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	93.57
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	93.26
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	93.1
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	93.04
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	92.58
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	92.29
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	92.27
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	91.91
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	91.34
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	90.64
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	90.54
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	89.95
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	89.85
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	88.9
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	87.54
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	87.08
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	85.87
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	84.44
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	84.25
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	83.64
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	83.33
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	80.19

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2e-48  Score=406.40  Aligned_cols=290  Identities=11%  Similarity=0.157  Sum_probs=231.0

Q ss_pred             cCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc-eeeecCCCcEEEe
Q 039441          177 SDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR-ESFNMEHGDVISV  255 (539)
Q Consensus       177 se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~-~~~~v~~GDV~~i  255 (539)
                      .++|.++.     .+...|+.+..++.+.|+|+|+++++||||++++|+||++|+|+||+|+++++ .+++|++||||+|
T Consensus        53 ~~gg~~r~-----~~~~~lp~~~~~a~~~~~L~pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~  127 (372)
T d1j58a_          53 EKGGYARE-----VTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF  127 (372)
T ss_dssp             ETTEEEEE-----ECTTTCTTCSSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred             cCCCeeEE-----eehhhChhhhhhhheEEEECCCcCcCCcccCcccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEE
Confidence            46677764     23456777778888889999999999999999999999999999999998865 5778999999999


Q ss_pred             CCCCeEEEEecCCCceEEEEEEeccCCC--CCCcee----ccc-----------cCccEEEcChhhhhhcCccc------
Q 039441          256 PAGTTYYLSNQDNVDRLHVAKLLQPVNT--PGQFRV----QQR-----------QQGTIKRASQEQLKALSHHA------  312 (539)
Q Consensus       256 PaG~~h~i~N~g~~e~L~iv~l~d~~n~--pg~f~~----~~q-----------~~G~Ivrv~~eql~~l~~~~------  312 (539)
                      |+|++||++|.+  +.++++++|++.+.  ..+|..    ...           +...|-++...+..++....      
T Consensus       128 P~G~~H~i~n~~--dg~e~l~vf~~~~~~~~~~f~~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~~i~~~~~p~~~~~  205 (372)
T d1j58a_         128 PSGLPHSIQALE--EGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKD  205 (372)
T ss_dssp             CTTCCEEEEEEE--EEEEEEEEESCTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHH
T ss_pred             CCCCEEEEEeCC--CCcEEEEEECCCCcccccceeeccccccCCHHHHHHhhCCCHHHHhhccccccccccccCCCcchh
Confidence            999999999985  56788888886553  233332    111           22222222222222221100      


Q ss_pred             --cccCCCCCCCCcceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceE
Q 039441          313 --SSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRG  390 (539)
Q Consensus       313 --~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g  390 (539)
                        ...+.+....+++|||+.++| +++.+|+++++++.+||+|++  |++++++|.||+|+.|||||+|++|.||++|+|
T Consensus       206 ~~~~~~~g~~~~~~~~~l~~q~P-~~~~gG~~~~~d~~~fp~~~~--is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g  282 (372)
T d1j58a_         206 DIVEGPNGEVPYPFTYRLLEQEP-IESEGGKVYIADSTNFKVSKT--IASALVTVEPGAMRELHWHPNTHEWQYYISGKA  282 (372)
T ss_dssp             HCCCCTTCCCSSCSEEEGGGSCC-EECSSEEEEEESTTTSTTCCS--CEEEEEEECTTCEEEEEECSSSCEEEEEEESEE
T ss_pred             hhccCCCCCCCCcceeeccccCC-cccCCccEEEeccccCCccCc--eeEEEEEECCCcccCCCCCCCCcEEEEEEECeE
Confidence              000122334567899999998 689999999999999999985  899999999999999999999999999999999


Q ss_pred             EEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCcccc
Q 039441          391 RFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNF  470 (539)
Q Consensus       391 ~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~f  470 (539)
                      +++|+++++                        +..+++|++|||+|||+|++|++.|++++++.||.++.++ .+... 
T Consensus       283 ~v~v~~~~g------------------------~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf~s~-~~~~i-  336 (372)
T d1j58a_         283 RMTVFASDG------------------------HARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDD-HYADV-  336 (372)
T ss_dssp             EEEEEEETT------------------------EEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSS-SCCCE-
T ss_pred             EEEEEcCCC------------------------ceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEEECCC-Cccee-
Confidence            999999876                        4677899999999999999999999999999999988765 33332 


Q ss_pred             ccccchhcccCcHHHHHHHcCCCHHHHHHhhcCC
Q 039441          471 LAGKINIMNQVERETMEVAFNVPARLIERVFGTN  504 (539)
Q Consensus       471 LAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q  504 (539)
                        +..+||+++|++||+++|+++.+++++|++..
T Consensus       337 --~~~~~l~~~P~~vv~~~~~~~~e~~~~l~~~k  368 (372)
T d1j58a_         337 --SLNQWLAMLPETFVQAHLDLGKDFTDVLSKEK  368 (372)
T ss_dssp             --EHHHHHHTSCHHHHHHHHTCCHHHHTTCCSSC
T ss_pred             --eHHHHhhhCCHHHHHHHhCcCHHHHHHHHhcC
Confidence              23689999999999999999999999997653

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=3.4e-41  Score=320.40  Aligned_cols=180  Identities=38%  Similarity=0.692  Sum_probs=157.1

Q ss_pred             CCCcceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCC
Q 039441          321 GSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSS  400 (539)
Q Consensus       321 ~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs  400 (539)
                      ....||||.+++|+|+|++|+++++++.++|+|+++||++++++|+||||++|||||+|++|+||++|+|+++||+|++.
T Consensus         5 ~~~~pfnl~~~~p~~~n~~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~   84 (185)
T d1uika2           5 SEDKPFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQ   84 (185)
T ss_dssp             CSSSCEETTSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC---
T ss_pred             cCCCccccccCCCceeCCCCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCcc
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             ccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccc-cchhcc
Q 039441          401 RWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMN  479 (539)
Q Consensus       401 ~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG-~~svL~  479 (539)
                      .          ..++.+.....|++++++|++||||+||+||+||++|+++  +.+|+|.+++.++..+|+|| .+|||+
T Consensus        85 ~----------~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d--~~~v~~~~~~~~~~~~f~ag~~~~vl~  152 (185)
T d1uika2          85 Q----------QRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSD--LNFFAFGINAENNQRNFLAGSKDNVIS  152 (185)
T ss_dssp             -------------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSS--EEEEEEEETCTTCCEEESSSSSSBGGG
T ss_pred             c----------hhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCC--ccEEEEEEcCCCCcccccccccccccc
Confidence            3          1112233445678999999999999999999999999765  77888888887888888777 589999


Q ss_pred             cCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecC
Q 039441          480 QVERETMEVAFNVPARLIERVFGTNPKESYFVAG  513 (539)
Q Consensus       480 ~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~  513 (539)
                      +||++||++|||++.+++++|+.+|+++ +|+++
T Consensus       153 ~~~~evLa~aF~v~~~~~~kl~~~q~e~-~i~~a  185 (185)
T d1uika2         153 QIPSQVQELAFPGSAKDIENLIKSQSES-YFVDA  185 (185)
T ss_dssp             GSCHHHHHHHSSSCHHHHHHHHHHCCSC-SEEEC
T ss_pred             cCCHHHHHHHhCCCHHHHHHHHhcCCce-EEecC
Confidence            9999999999999999999999999987 99974

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=1e-38  Score=300.63  Aligned_cols=165  Identities=24%  Similarity=0.413  Sum_probs=151.9

Q ss_pred             ceec--CCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCcc
Q 039441          325 PFNL--LSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW  402 (539)
Q Consensus       325 ~fnl--~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~  402 (539)
                      .+|+  .+.+++|++++|+++++++.+||+|++++|++++++|+||||++|||||+|++|+||++|+|+++||++++.  
T Consensus         7 ~~ni~~~~~~d~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~--   84 (174)
T d1fxza2           7 RHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE--   84 (174)
T ss_dssp             EEECSSSSCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSC--
T ss_pred             hhccCCCCCCCcCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCc--
Confidence            4566  467889999999999999999999999999999999999999999999999999999999999999999863  


Q ss_pred             chhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCc
Q 039441          403 SQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVE  482 (539)
Q Consensus       403 s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p  482 (539)
                                           ++++++|++|||++||+|++||++|+ ++++.+++|.++. ++.+++|||.++||++||
T Consensus        85 ---------------------~~~~~~l~~Gdv~vvP~G~~h~~~n~-~~~~~~v~~~~~~-~~~~~~lag~~s~l~~~~  141 (174)
T d1fxza2          85 ---------------------RVFDGELQEGRVLIVPQNFVVAARSQ-SDNFEYVSFKTND-TPMIGTLAGANSLLNALP  141 (174)
T ss_dssp             ---------------------EEEEEEEETTCEEEECTTCEEEEEEC-STTEEEEEEESSS-SCCEEESSSTTCTGGGSC
T ss_pred             ---------------------eeEEEEEcCCcEEEECCCCEEEEEeC-CCCeEEEEEEccC-CCCcccccchhhhhhcCC
Confidence                                 57889999999999999999999997 5689999988775 888999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHhhcCCCCceeEecCCh
Q 039441          483 RETMEVAFNVPARLIERVFGTNPKESYFVAGPE  515 (539)
Q Consensus       483 ~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~  515 (539)
                      ++||++||+++.+++++|+.+|++. +|+|+++
T Consensus       142 ~~vl~~af~v~~eei~~lk~~q~~~-~~~~P~~  173 (174)
T d1fxza2         142 EEVIQHTFNLKSQQARQIKNNNPFK-FLVPPQE  173 (174)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHSCCCS-SEECCCC
T ss_pred             HHHHHHHHCcCHHHHHHHHhcCCce-EeCCCCC
Confidence            9999999999999999999998776 8887553

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=100.00  E-value=6e-38  Score=301.55  Aligned_cols=154  Identities=39%  Similarity=0.704  Sum_probs=141.2

Q ss_pred             CCCceeec-CccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeC
Q 039441          161 NNPYYFHS-QRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSH  239 (539)
Q Consensus       161 ~~py~f~~-~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~p  239 (539)
                      +|||+|++ ++|+++|+|++|+|++|+.||+++++|+|+.+||+++++|+|+||++|||+||++|+||++|+|+|++|.|
T Consensus         1 ~np~~f~~~~~f~~~~~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p   80 (200)
T d2phla1           1 DNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKP   80 (200)
T ss_dssp             CCTTEECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEET
T ss_pred             CCCeecCchhcccceeECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeecCCCCEEEEEEeeeEEEEEEEC
Confidence            69999975 68999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceee------ecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC--Ccee----------------------
Q 039441          240 ERRESF------NMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG--QFRV----------------------  289 (539)
Q Consensus       240 g~~~~~------~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg--~f~~----------------------  289 (539)
                      +|++++      +|++||||+||||++|||+|+|++++|++++++++.|.++  .|.+                      
T Consensus        81 ~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~~svl~~f~~evLa~aF  160 (200)
T d2phla1          81 DDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASF  160 (200)
T ss_dssp             TTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGGSCHHHHHHHH
T ss_pred             CCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceeccccccccHhHcCCHHHHHHHc
Confidence            998765      7999999999999999999998889999999999988653  3332                      


Q ss_pred             -----------c---cccCccEEEcChhhhhhcCccccc
Q 039441          290 -----------Q---QRQQGTIKRASQEQLKALSHHASS  314 (539)
Q Consensus       290 -----------~---~q~~G~Ivrv~~eql~~l~~~~~~  314 (539)
                                 +   .+.+|.||+++++|+++|++++++
T Consensus       161 ~v~~e~~~kl~~~~~~q~~g~Iv~~~~eq~~~ls~~~~s  199 (200)
T d2phla1         161 NSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSKHAKS  199 (200)
T ss_dssp             TSCHHHHHHHHTCSTTCBSSSEEECCTTTHHHHHHHHHT
T ss_pred             CCCHHHHHHHHhccccccCCceEEcCHHHHHHhhccccC
Confidence                       1   246899999999999999998765

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=4.5e-36  Score=282.35  Aligned_cols=160  Identities=19%  Similarity=0.315  Sum_probs=143.1

Q ss_pred             ceec--CCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCcc
Q 039441          325 PFNL--LSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW  402 (539)
Q Consensus       325 ~fnl--~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~  402 (539)
                      .+||  .+++++|++.+|+++++++.+||+|+++|||+++++|+||||++|||||+|++|+||++|+|+++||++++.  
T Consensus        12 r~ni~~p~~~d~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~--   89 (173)
T d1od5a2          12 HENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGN--   89 (173)
T ss_dssp             EEECCSGGGCSEEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSC--
T ss_pred             ecCCCCcccCCccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCc--
Confidence            4666  467888999999999999999999999999999999999999999999999999999999999999999863  


Q ss_pred             chhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCc
Q 039441          403 SQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVE  482 (539)
Q Consensus       403 s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p  482 (539)
                                           ++++.+|++|||++||+|++||++|. +++++|++|+++. ++..   ++..+||++||
T Consensus        90 ---------------------~~~~~~l~~Gdv~~iP~G~~h~~~n~-~~~~~~v~~~~~~-~~~~---~~~~s~l~~~p  143 (173)
T d1od5a2          90 ---------------------AVFDGELRRGQLLVVPQNFVVAEQGG-EQGLEYVVFKTHH-NAVS---SYIKDVFRAIP  143 (173)
T ss_dssp             ---------------------EEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEESST-TCCE---EEHHHHHHHSC
T ss_pred             ---------------------eEEeEEecCCcEEEECCCCEEEEEcC-CCceEEEEeecCC-chhh---hhHHHHHHhCC
Confidence                                 58889999999999999999999986 6789999988765 4333   34479999999


Q ss_pred             HHHHHHHcCCCHHHHHHhhcCCCCceeEecC
Q 039441          483 RETMEVAFNVPARLIERVFGTNPKESYFVAG  513 (539)
Q Consensus       483 ~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~  513 (539)
                      ++||++||+++.+++++|+.++++. .||++
T Consensus       144 ~evl~~af~v~~e~v~~lk~~~~~~-~i~~P  173 (173)
T d1od5a2         144 SEVLSNSYNLGQSQVRQLKYQGNSG-PLVNP  173 (173)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHSSCSS-SEECC
T ss_pred             HHHHHHHhCcCHHHHHHHHhcCCCC-cccCc
Confidence            9999999999999999999998776 66653

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=3.9e-35  Score=282.44  Aligned_cols=153  Identities=42%  Similarity=0.811  Sum_probs=141.3

Q ss_pred             CCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCC
Q 039441          162 NPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHER  241 (539)
Q Consensus       162 ~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~  241 (539)
                      |||+|+.++|+++|+|++|.|++|+.||.++++|+++.+|+|++++|+|++|++|||+||++|+||++|+|++++|.|++
T Consensus         1 npy~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~   80 (203)
T d1uika1           1 NPFHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDD   80 (203)
T ss_dssp             CTTEECGGGEEEEEECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEECSSC
T ss_pred             CCeeeccccccCceECCCCeEEEecccCccchhhccccceEEEEEEecCCCccccccCCCcEEEEEEEEEEEEEEEeCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCc---ee-----------------------------
Q 039441          242 RESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQF---RV-----------------------------  289 (539)
Q Consensus       242 ~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f---~~-----------------------------  289 (539)
                      .++++|++||||+||+|++||++|+++++.|+|+++.++.|.+++|   .+                             
T Consensus        81 ~~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~~~vl~gf~~~vL~~aF~v~~e~~  160 (203)
T d1uika1          81 RDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEI  160 (203)
T ss_dssp             EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHH
T ss_pred             eEEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccccchhHhCCHHHHHHHhCCCHHHH
Confidence            9999999999999999999999999988999999999998876543   22                             


Q ss_pred             -----c----------cccCccEEEcChhhhhhcCccccc
Q 039441          290 -----Q----------QRQQGTIKRASQEQLKALSHHASS  314 (539)
Q Consensus       290 -----~----------~q~~G~Ivrv~~eql~~l~~~~~~  314 (539)
                           +          .+..|.|++++++|++.|++++++
T Consensus       161 ~kl~~~q~~~~~~~~~~~~~g~iv~~~~eq~r~~~~~~~~  200 (203)
T d1uika1         161 NKVLFGREEGQQQGEERLQESVIVEISKKQIRELSKHAKS  200 (203)
T ss_dssp             HHHTTC------------CCSSEEECCHHHHHHHTTTCBC
T ss_pred             HHHHhcccccccccccccCCCCEeecCHHHHHHHhccCCC
Confidence                 0          125689999999999999988754

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=100.00  E-value=1.4e-34  Score=273.01  Aligned_cols=128  Identities=34%  Similarity=0.736  Sum_probs=124.2

Q ss_pred             CCCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCC
Q 039441          161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHE  240 (539)
Q Consensus       161 ~~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg  240 (539)
                      +|||+|..++|+++|+|++|+|++|+.|++++++|+|+.+|++++++|+|++|++|||+||++|+||++|+|++++|.|+
T Consensus         1 ~npy~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~   80 (178)
T d1dgwa_           1 NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPD   80 (178)
T ss_dssp             CCTTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETT
T ss_pred             CCCeeccccccccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCcccccccCCCCEEEEEEEeEEEEEEecCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCce
Q 039441          241 RRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFR  288 (539)
Q Consensus       241 ~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~  288 (539)
                      ++++++|++||||+||+|++|||+|++++++|+++++++++|.+++|.
T Consensus        81 ~~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~  128 (178)
T d1dgwa_          81 GRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVE  128 (178)
T ss_dssp             EEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCC
T ss_pred             ceEEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCcccc
Confidence            999999999999999999999999999889999999999998887664

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=100.00  E-value=2.5e-33  Score=260.95  Aligned_cols=154  Identities=32%  Similarity=0.561  Sum_probs=135.4

Q ss_pred             cccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHH
Q 039441          334 IYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEE  413 (539)
Q Consensus       334 ~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~  413 (539)
                      .++|++|.+++++.      +.+||+|++++|+||||++|||||+|++|+||++|+|+++||+|++.+            
T Consensus         2 ~~~n~fg~~~~~~~------n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~------------   63 (162)
T d2phla2           2 TIGNEFGNLTERTD------NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNK------------   63 (162)
T ss_dssp             EEEETTEEEEEEEE------TTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--------------
T ss_pred             ccccccCceeecCC------CCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCcc------------
Confidence            46899999999985      457999999999999999999999999999999999999999998742            


Q ss_pred             HHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccch------hcccCcHHHHH
Q 039441          414 EEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKIN------IMNQVERETME  487 (539)
Q Consensus       414 ~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~s------vL~~~p~evLa  487 (539)
                           ....|++++.+|++|||+|||+|++||++|+++  ..+|+|.+++.++..+||||..+      ++++||++||+
T Consensus        64 -----~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~--~~~v~~~~~~~~~~~~flaG~~~sv~~~~~~~~~~~evL~  136 (162)
T d2phla2          64 -----ETLEYESYRAELSKDDVFVIPAAYPVAIKATSN--VNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLG  136 (162)
T ss_dssp             -----CCSCEEEEEEEEETTCEEEECTTCCEEEEESSS--EEEEEEEESCTTCCEEESSSSSSBHHHHHHTSTTHHHHHH
T ss_pred             -----ccccceeeEeeecCCcEEEECCCCEEEEEeCCC--ceEEEEEecCCCCcceeecCccccchhhhcccCCCHHHHH
Confidence                 123457899999999999999999999999854  77888888877888999999742      55789999999


Q ss_pred             HHcCCCHHHHHHhhcCCCCceeEecC
Q 039441          488 VAFNVPARLIERVFGTNPKESYFVAG  513 (539)
Q Consensus       488 ~AF~vs~e~v~kL~~~q~e~~~fv~~  513 (539)
                      +||+++.+++++|+.+|+++ +|+.+
T Consensus       137 ~aF~v~~eevekl~~~q~e~-~~v~a  161 (162)
T d2phla2         137 LTFSGSGDEVMKLINKQSGS-YFVDA  161 (162)
T ss_dssp             HHSSSCHHHHHHHHTTCCCC-SEEEC
T ss_pred             HHhCCCHHHHHHHHhhCCce-EEEeC
Confidence            99999999999999999997 99865

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.98  E-value=3.2e-32  Score=261.43  Aligned_cols=171  Identities=19%  Similarity=0.250  Sum_probs=143.9

Q ss_pred             CCCCcccCCCceEEEeCCc--cccccccc-ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhh
Q 039441          330 SRKPIYNNNFGRFFEATPK--DYQQLQEI-DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQES  406 (539)
Q Consensus       330 ~~~p~~sn~~G~i~~~~~~--~fP~L~~l-~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~  406 (539)
                      +-.+.|+|++|++++++..  +.+.|+++ ++++++++|+||||++|||+ +|++|+||++|+|+++||+|++++     
T Consensus        11 ~f~~~~~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~-nA~~i~yV~~G~G~v~~v~p~~~~-----   84 (200)
T d2phla1          11 SWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDRR-----   84 (200)
T ss_dssp             TEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETTTEE-----
T ss_pred             cccceeECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeecC-CCCEEEEEEeeeEEEEEEECCCCc-----
Confidence            3468899999999999863  56889887 79999999999999999995 999999999999999999999843     


Q ss_pred             hhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCC-CCcEEEEEEeecC--CCCcccccccc---chhccc
Q 039441          407 QREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASP-NEKLLTVGFSLNA--RNNQRNFLAGK---INIMNQ  480 (539)
Q Consensus       407 ~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~g-ne~l~~v~F~~na--~n~~~~fLAG~---~svL~~  480 (539)
                                    ..+...+.+|++||||+||+|++||++|.+ +++|++++|.+++  .++..+||||.   .|||++
T Consensus        85 --------------~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~~svl~~  150 (200)
T d2phla1          85 --------------EYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQE  150 (200)
T ss_dssp             --------------EEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGG
T ss_pred             --------------eeehhhccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceeccccccccHhHc
Confidence                          112345678999999999999999999965 5789999876554  34567899996   489999


Q ss_pred             CcHHHHHHHcCCCHHHHHHhhcCC--CCceeEecCChhhhhh
Q 039441          481 VERETMEVAFNVPARLIERVFGTN--PKESYFVAGPEEQQQR  520 (539)
Q Consensus       481 ~p~evLa~AF~vs~e~v~kL~~~q--~e~~~fv~~p~~~~~~  520 (539)
                      |+++|||+|||++.+++++|+..+  ...++||+.+++|++.
T Consensus       151 f~~evLa~aF~v~~e~~~kl~~~~~~q~~g~Iv~~~~eq~~~  192 (200)
T d2phla1         151 FSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKE  192 (200)
T ss_dssp             SCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTTHHH
T ss_pred             CCHHHHHHHcCCCHHHHHHHHhccccccCCceEEcCHHHHHH
Confidence            999999999999999999998542  2235899999887664

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.97  E-value=1.1e-31  Score=253.14  Aligned_cols=166  Identities=21%  Similarity=0.333  Sum_probs=140.9

Q ss_pred             CcceecCCCCCcccCCCceEEEeCC--ccccccccc-ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCC
Q 039441          323 TAPFNLLSRKPIYNNNFGRFFEATP--KDYQQLQEI-DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLS  399 (539)
Q Consensus       323 ~~~fnl~~~~p~~sn~~G~i~~~~~--~~fP~L~~l-~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~g  399 (539)
                      ++.|++.+..+.|++++|+++.++.  .+.+.|+++ ++++++++|+||||++||| ++|++|+||++|+|+++||++++
T Consensus         3 py~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~a~ev~yV~~G~g~v~~v~~~~   81 (178)
T d1dgwa_           3 PYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDLLVLVLEGQAILVLVNPDG   81 (178)
T ss_dssp             TTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEE-ESSEEEEEEEESEEEEEEEETTE
T ss_pred             CeeccccccccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCccccccc-CCCCEEEEEEEeEEEEEEecCCc
Confidence            4567777778999999999888764  456789988 6999999999999999997 79999999999999999999974


Q ss_pred             CccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCC-CCcEEEEEEeecCCC--Ccc-ccccc--
Q 039441          400 SRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASP-NEKLLTVGFSLNARN--NQR-NFLAG--  473 (539)
Q Consensus       400 s~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~g-ne~l~~v~F~~na~n--~~~-~fLAG--  473 (539)
                                               ..+++|++||||+||+|++||++|.+ +++|.+++|.+++.+  ... ++++|  
T Consensus        82 -------------------------~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~  136 (178)
T d1dgwa_          82 -------------------------RDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTK  136 (178)
T ss_dssp             -------------------------EEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCS
T ss_pred             -------------------------eEEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCcccccccccccc
Confidence                                     46789999999999999999999964 578999998865422  222 34444  


Q ss_pred             -cchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCC
Q 039441          474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGP  514 (539)
Q Consensus       474 -~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p  514 (539)
                       ..|||++||++||++||+++.+++++|+..+++.++|+..|
T Consensus       137 ~~~svl~~~~~evL~~aF~v~~e~~~kl~~~~~~~g~Iv~~P  178 (178)
T d1dgwa_         137 RLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP  178 (178)
T ss_dssp             SCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECC
T ss_pred             CcccHHHhCCHHHHHHHhCCCHHHHHHHHhcccCCCcEEeCc
Confidence             36899999999999999999999999988877666898876

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.97  E-value=2.5e-32  Score=255.83  Aligned_cols=128  Identities=41%  Similarity=0.833  Sum_probs=121.9

Q ss_pred             ccCCCcee-ecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEE
Q 039441          159 EENNPYYF-HSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLV  237 (539)
Q Consensus       159 ~~~~py~f-~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v  237 (539)
                      +.+|||+| ++++|+++++|++|.|++|+.|+.++++|+|+.+|++++++|+|+++++|||+||++|+||++|+|+|++|
T Consensus         1 ~~~~P~~f~~~~~f~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v   80 (170)
T d1uija1           1 DENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLV   80 (170)
T ss_dssp             TTSCTTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEE
T ss_pred             CCCCCeecccccccccccccCCCcEEEEecccccchhhcchhheEEEEEEecCCcccccccCCCCEEEEEEEEEEEEEEE
Confidence            36899999 57789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCC
Q 039441          238 SHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQ  286 (539)
Q Consensus       238 ~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~  286 (539)
                      .|++..+++|++||||+||+|++||++|+++++.|+|+++.+++|.|++
T Consensus        81 ~~~~~~~~~l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~  129 (170)
T d1uija1          81 NNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGR  129 (170)
T ss_dssp             CSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTB
T ss_pred             eCCCcEEEEecCCcEEEECCCCeEEEEEcCCCCcEEEEEecCCcCCCcc
Confidence            9999999999999999999999999999998899999999998887654

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.97  E-value=8e-31  Score=252.15  Aligned_cols=173  Identities=18%  Similarity=0.279  Sum_probs=141.7

Q ss_pred             CcceecCCCCCcccCCCceEEEeCCcc--ccccccc-ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCC
Q 039441          323 TAPFNLLSRKPIYNNNFGRFFEATPKD--YQQLQEI-DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLS  399 (539)
Q Consensus       323 ~~~fnl~~~~p~~sn~~G~i~~~~~~~--fP~L~~l-~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~g  399 (539)
                      ++.|+..+.++.|++++|++++++..+  .+.|+++ ++++++++|+||||++|||+ +|++|+||++|+|+++||+|++
T Consensus         2 py~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~-~a~ev~yV~~G~g~~~~v~~~~   80 (203)
T d1uika1           2 PFHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHA-DADYLIVILNGTAILTLVNNDD   80 (203)
T ss_dssp             TTEECGGGEEEEEECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEECSSC
T ss_pred             CeeeccccccCceECCCCeEEEecccCccchhhccccceEEEEEEecCCCccccccC-CCcEEEEEEEEEEEEEEEeCCC
Confidence            456777777899999999999998755  3567766 89999999999999999985 9999999999999999999986


Q ss_pred             CccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC-CcEEEEEEeecC--CCCcc-cccccc-
Q 039441          400 SRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN-EKLLTVGFSLNA--RNNQR-NFLAGK-  474 (539)
Q Consensus       400 s~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn-e~l~~v~F~~na--~n~~~-~fLAG~-  474 (539)
                                               ..+++|++||||+||+|++||++|+++ +.|.+|+|.+++  .++.. ++++|. 
T Consensus        81 -------------------------~~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~  135 (203)
T d1uika1          81 -------------------------RDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQ  135 (203)
T ss_dssp             -------------------------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCS
T ss_pred             -------------------------eEEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCc
Confidence                                     356789999999999999999999765 679999887644  22333 455553 


Q ss_pred             --chhcccCcHHHHHHHcCCCHHHHHHhhcCCCCc----------eeEecCChhhhhhc
Q 039441          475 --INIMNQVERETMEVAFNVPARLIERVFGTNPKE----------SYFVAGPEEQQQRD  521 (539)
Q Consensus       475 --~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~----------~~fv~~p~~~~~~~  521 (539)
                        .|||++||++||++||+++.+++++|+..+.+.          ++|++.++++++.-
T Consensus       136 ~~~~vl~gf~~~vL~~aF~v~~e~~~kl~~~q~~~~~~~~~~~~~g~iv~~~~eq~r~~  194 (203)
T d1uika1         136 AQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQESVIVEISKKQIREL  194 (203)
T ss_dssp             SCCCGGGGSCHHHHHHHHTSCHHHHHHHTTC------------CCSSEEECCHHHHHHH
T ss_pred             cccchhHhCCHHHHHHHhCCCHHHHHHHHhcccccccccccccCCCCEeecCHHHHHHH
Confidence              489999999999999999999999999776642          47888887775543

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.97  E-value=6.3e-31  Score=258.88  Aligned_cols=178  Identities=19%  Similarity=0.306  Sum_probs=137.4

Q ss_pred             ccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCcc--chhhhhhhhH
Q 039441          335 YNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW--SQESQREQQE  412 (539)
Q Consensus       335 ~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~--s~~~~~g~~~  412 (539)
                      +...+|.+..|+ .+.|.|+|+||++.+++|+|+||++||| ++|+.|+||++|+|+++||+|++++.  ++....+.++
T Consensus        17 ~~sE~G~~E~wd-~~~~qlqcagV~~~r~~I~p~gL~lP~y-s~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~   94 (245)
T d1od5a1          17 VESEGGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSY-SPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRG   94 (245)
T ss_dssp             EEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEE-CSSCEEEEEEECEEEEEECCTTCCCCEEECC-------
T ss_pred             hcccCCeEEeCC-CCCHHHhhcCceeEEEEEcCCccccccc-cCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccc
Confidence            345688776666 6679999999999999999999999999 69999999999999999999999871  1111111111


Q ss_pred             HHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCC-------CCcccccccc-----------
Q 039441          413 EEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNAR-------NNQRNFLAGK-----------  474 (539)
Q Consensus       413 ~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~-------n~~~~fLAG~-----------  474 (539)
                      +++++...+.+++ ..+|++||||+||||++||++|++|++|++|++.+.++       +...++|||.           
T Consensus        95 ~~~~~~~~d~~qk-~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~~~~~~~~~~  173 (245)
T d1od5a1          95 SRSQQQLQDSHQK-IRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQ  173 (245)
T ss_dssp             --------EEESC-EEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCTTTTC-
T ss_pred             cccccccccceee-eecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCcccccchhccc
Confidence            1122223344444 48999999999999999999999999999998865431       2467899996           


Q ss_pred             ----------------------chhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCCh
Q 039441          475 ----------------------INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPE  515 (539)
Q Consensus       475 ----------------------~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~  515 (539)
                                            +|||++|+.++||+||||+.+++++|+..++..+.||...+
T Consensus       174 q~~~~~~~~~~~~~~~~~~~~~~nif~gF~~~~La~Af~v~~e~~~klq~~~~~rG~IVrv~~  236 (245)
T d1od5a1         174 QQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEG  236 (245)
T ss_dssp             --------------------CCCCTTTTSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEECSS
T ss_pred             chhhhhcccccccccccccccCCCeeecCCHHHHHHHHCCCHHHHHHHhCcccCCCcEEEEcC
Confidence                                  28999999999999999999999999965544457887643

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.97  E-value=2.4e-30  Score=253.84  Aligned_cols=183  Identities=19%  Similarity=0.259  Sum_probs=137.8

Q ss_pred             cCCCCCc--ccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchh
Q 039441          328 LLSRKPI--YNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQE  405 (539)
Q Consensus       328 l~~~~p~--~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~  405 (539)
                      |....|.  +.+.+|.+..|+ .+.+.|+|+||++.+++|+|+||++||| ++|+.|+||++|+|+++||+|+|++-...
T Consensus         8 L~a~eP~~ri~sE~G~~E~~d-~~~~qlqcagV~~~r~~I~p~gL~lP~y-~~a~~i~yV~qG~G~~g~v~pgc~et~~~   85 (239)
T d1fxza1           8 LNALKPDNRIESEGGLIETWN-PNNKPFQCAGVALSRCTLNRNALRRPSY-TNGPQEIYIQQGKGIFGMIYPGCPSTFEE   85 (239)
T ss_dssp             CCCBCCSCEEEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEE-ESSCEEEEEEECCEEEEEECTTCCCC---
T ss_pred             cccCCCchhhccCCceEEecC-CCChhhhhccchhheeeeccCceeccee-cCCCeEEEEEeCEEEEEEecCCChhhhcc
Confidence            4444443  677899877666 5669999999999999999999999999 69999999999999999999999871111


Q ss_pred             hhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC-C------CCcccccccc----
Q 039441          406 SQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA-R------NNQRNFLAGK----  474 (539)
Q Consensus       406 ~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na-~------n~~~~fLAG~----  474 (539)
                      +.. .+++++.+...+. +....+|++||||+||||++||++|++|++|++|++.+.+ .      ++..++|||+    
T Consensus        86 ~~~-~~~~~~~~~~~d~-~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e  163 (239)
T d1fxza1          86 PQQ-PQQRGQSSRPQDR-HQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQE  163 (239)
T ss_dssp             ----------------C-CCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCT
T ss_pred             ccc-ccccccccccchh-hhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCCcccc
Confidence            000 0011111112233 3445899999999999999999999999999999966443 1      1356899996    


Q ss_pred             --------------------------chhcccCcHHHHHHHcCCCHHHHHHhhcCC--CCceeEecCC
Q 039441          475 --------------------------INIMNQVERETMEVAFNVPARLIERVFGTN--PKESYFVAGP  514 (539)
Q Consensus       475 --------------------------~svL~~~p~evLa~AF~vs~e~v~kL~~~q--~e~~~fv~~p  514 (539)
                                                +|||++|+.++||+||||+.+++++|+..+  .+.+.||...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~gFs~~~La~Afnv~~e~~~klq~~~~~~~rG~IVrv~  231 (239)
T d1fxza1         164 FLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVK  231 (239)
T ss_dssp             THHHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECS
T ss_pred             cccccccccccccccccccccccccCCCcccccCHHHHHHHHCcCHHHHHHHhcccccccCCCEEEEc
Confidence                                      389999999999999999999999999765  2345788764

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.96  E-value=3e-29  Score=240.77  Aligned_cols=152  Identities=18%  Similarity=0.186  Sum_probs=128.6

Q ss_pred             CCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhh
Q 039441          330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQRE  409 (539)
Q Consensus       330 ~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g  409 (539)
                      ...+..++.+|+++.++..+||+|++++|||++++|.||||++|||||+|+||+||++|+++++++.+....        
T Consensus        44 ~~~~~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~--------  115 (201)
T d2et1a1          44 KAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSG--------  115 (201)
T ss_dssp             SCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGT--------
T ss_pred             cCCCccCCCCcEEEEeehhcCccccccceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCC--------
Confidence            344455567888999999999999999999999999999999999999999999999999999999863210        


Q ss_pred             hhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCcccccccc-chhcccCcHHHHHH
Q 039441          410 QQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGK-INIMNQVERETMEV  488 (539)
Q Consensus       410 ~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~-~svL~~~p~evLa~  488 (539)
                      .             +.++.+|++||||+||+|++||++|.+++++.+++++.+. ++..+.++.. -+.+.+||.+||++
T Consensus       116 ~-------------~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s~-~pg~~~~~~~~f~~~~~~p~eVLa~  181 (201)
T d2et1a1         116 N-------------KLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQ-NPGIVFVPLTLFGSDPPIPTPVLTK  181 (201)
T ss_dssp             T-------------CEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEESSS-CCCCEEHHHHHHHCSSCCCHHHHHH
T ss_pred             c-------------eeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEecCC-CCcceehhhhhhccCCCCCHHHHHH
Confidence            1             5888999999999999999999999999998888766554 7777666521 12234699999999


Q ss_pred             HcCCCHHHHHHhhcC
Q 039441          489 AFNVPARLIERVFGT  503 (539)
Q Consensus       489 AF~vs~e~v~kL~~~  503 (539)
                      ||+++.+++++|+..
T Consensus       182 af~i~~~~v~kLks~  196 (201)
T d2et1a1         182 ALRVEAGVVELLKSK  196 (201)
T ss_dssp             HHTSCHHHHHHHHHT
T ss_pred             HhCCCHHHHHHHHhh
Confidence            999999999999853

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.96  E-value=9.4e-30  Score=249.66  Aligned_cols=106  Identities=19%  Similarity=0.443  Sum_probs=99.4

Q ss_pred             eeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceee-----
Q 039441          173 YRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESF-----  245 (539)
Q Consensus       173 ~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~-----  245 (539)
                      ++|+||||.+++   ||+++++|+  ||+++|++|   +|+||+||||+||+.|+||++|+|++++|.|+|+++|     
T Consensus        15 ~ri~sE~G~~E~---~d~~~~qlqcagV~~~r~~I---~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~   88 (239)
T d1fxza1          15 NRIESEGGLIET---WNPNNKPFQCAGVALSRCTL---NRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQ   88 (239)
T ss_dssp             CEEEETTEEEEE---CCTTSHHHHHHTCEEEEEEE---CTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------
T ss_pred             hhhccCCceEEe---cCCCChhhhhccchhheeee---ccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhccccc
Confidence            589999998875   999999999  999999999   9999999999999999999999999999999998765     


Q ss_pred             ------------------ecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC
Q 039441          246 ------------------NMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG  285 (539)
Q Consensus       246 ------------------~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg  285 (539)
                                        +|++||||+||||++|||||+| +++|++|+|+|++|.++
T Consensus        89 ~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~g-n~~Lv~v~~~d~~n~~N  145 (239)
T d1fxza1          89 PQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNE-DTPVVAVSIIDTNSLEN  145 (239)
T ss_dssp             ------------CCCCEEEECTTEEEEECTTCEEEEEECS-SSCEEEEEEECTTCTTC
T ss_pred             ccccccccccchhhhhhhccccCCEEEecCCceEEEEeCC-CCcEEEEEEeccccccc
Confidence                              9999999999999999999998 69999999999988654

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.96  E-value=3.9e-29  Score=233.98  Aligned_cols=154  Identities=21%  Similarity=0.354  Sum_probs=129.8

Q ss_pred             CcceecCCC---CCcccCCCceEEEeCC--ccccccccc-ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEec
Q 039441          323 TAPFNLLSR---KPIYNNNFGRFFEATP--KDYQQLQEI-DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGG  396 (539)
Q Consensus       323 ~~~fnl~~~---~p~~sn~~G~i~~~~~--~~fP~L~~l-~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~  396 (539)
                      .+||++..+   .+.++|++|++++++.  ...|.|+++ ++++++++|+||||++||| ++|++|+||++|+|+++||+
T Consensus         3 ~~P~~f~~~~~f~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~-~~a~ei~yV~~G~g~v~~v~   81 (170)
T d1uija1           3 NNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHH-ADADFLLFVLSGRAILTLVN   81 (170)
T ss_dssp             SCTTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEE-ESEEEEEEEEESCEEEEEEC
T ss_pred             CCCeecccccccccccccCCCcEEEEecccccchhhcchhheEEEEEEecCCccccccc-CCCCEEEEEEEEEEEEEEEe
Confidence            467887543   4678999999998876  457899998 5999999999999999997 69999999999999999999


Q ss_pred             CCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC-CcEEEEEEeecC--CCCccccc-c
Q 039441          397 PLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN-EKLLTVGFSLNA--RNNQRNFL-A  472 (539)
Q Consensus       397 p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn-e~l~~v~F~~na--~n~~~~fL-A  472 (539)
                      |++                         ..+++|++|||++||+|++||++|+++ +.|.+++|...+  .+....|+ +
T Consensus        82 ~~~-------------------------~~~~~l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~  136 (170)
T d1uija1          82 NDD-------------------------RDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLS  136 (170)
T ss_dssp             SSC-------------------------EEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESS
T ss_pred             CCC-------------------------cEEEEecCCcEEEECCCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccc
Confidence            986                         456789999999999999999999865 568888876543  22333344 4


Q ss_pred             cc---chhcccCcHHHHHHHcCCCHHHHHHhhc
Q 039441          473 GK---INIMNQVERETMEVAFNVPARLIERVFG  502 (539)
Q Consensus       473 G~---~svL~~~p~evLa~AF~vs~e~v~kL~~  502 (539)
                      |.   .|||++||++||++||+++.+++++|+.
T Consensus       137 ~~~~~~svl~~~~~evLa~aF~v~~e~i~kl~~  169 (170)
T d1uija1         137 STQAQQSYLQGFSHNILETSFHSEFEEINRVLF  169 (170)
T ss_dssp             CBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             cCCCcccHhHhCCHHHHHHHhCCCHHHHHHHhc
Confidence            43   5899999999999999999999999974

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.96  E-value=3e-29  Score=246.89  Aligned_cols=105  Identities=25%  Similarity=0.458  Sum_probs=99.3

Q ss_pred             ceeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeee---
Q 039441          172 RYRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFN---  246 (539)
Q Consensus       172 ~~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~---  246 (539)
                      ..+|+||||.+++   ||+++++|+  ||+++|++|   +|+||+||||+||+.|+||++|+|++++|.|||+++|.   
T Consensus        14 ~~r~~sE~G~~E~---wd~~~~qlqcagV~~~r~~I---~p~gL~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~   87 (245)
T d1od5a1          14 DHRVESEGGLIET---WNSQHPELQCAGVTVSKRTL---NRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQ   87 (245)
T ss_dssp             CEEEEETTEEEEE---CCTTSHHHHHHTCEEEEEEE---CTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC
T ss_pred             chhhcccCCeEEe---CCCCCHHHhhcCceeEEEEE---cCCccccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchh
Confidence            3699999999986   999999999  999999999   99999999999999999999999999999999988764   


Q ss_pred             -----------------------cCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCC
Q 039441          247 -----------------------MEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNT  283 (539)
Q Consensus       247 -----------------------v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~  283 (539)
                                             |++||||+||||++|||||+| +++|++|+|+|++|.
T Consensus        88 ~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdg-n~~Lv~v~~~d~~N~  146 (245)
T d1od5a1          88 QQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTG-DEPVVAISLLDTSNF  146 (245)
T ss_dssp             ---------------EEESCEEEEETTEEEEECTTCCEEEEECS-SSCEEEEEEECTTCT
T ss_pred             hcccccccccccccccceeeeecccCCCEEEECCCceEEEEeCC-CCcEEEEEEEcccCc
Confidence                                   999999999999999999987 699999999998875

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=2.6e-24  Score=223.47  Aligned_cols=141  Identities=14%  Similarity=0.186  Sum_probs=124.6

Q ss_pred             cCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHH
Q 039441          336 NNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEE  415 (539)
Q Consensus       336 sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~  415 (539)
                      ...+|++++++..+||+|+.  |+++.+.|+||||++||||++| +|+||++|++++++|+++|                
T Consensus        52 ~~~gg~~r~~~~~~lp~~~~--~a~~~~~L~pga~~~pH~H~~a-e~~yVl~G~~~vt~Vd~~G----------------  112 (372)
T d1j58a_          52 LEKGGYAREVTVRELPISEN--LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKG----------------  112 (372)
T ss_dssp             EETTEEEEEECTTTCTTCSS--CEEEEEEECTTCEEEEEEESSC-EEEEEEEEEEEEEEECTTS----------------
T ss_pred             ccCCCeeEEeehhhChhhhh--hhheEEEECCCcCcCCcccCcc-cEEEEEeCEEEEEEEeCCC----------------
Confidence            35699999999999999985  9999999999999999999876 8999999999999999987                


Q ss_pred             HHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHcCCCHH
Q 039441          416 EEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPAR  495 (539)
Q Consensus       416 ~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e  495 (539)
                              +.+..+|++|||++||+|++|++.|. +++++||.++++. +.....+++..++|+++|.+||++||+++.+
T Consensus       113 --------~~~~~~l~~GDv~~~P~G~~H~i~n~-~dg~e~l~vf~~~-~~~~~~~f~~~~~~~~~p~evLa~af~v~~~  182 (372)
T d1j58a_         113 --------RSFIDDVGEGDLWYFPSGLPHSIQAL-EEGAEFLLVFDDG-SFSENSTFQLTDWLAHTPKEVIAANFGVTKE  182 (372)
T ss_dssp             --------CEEEEEEETTEEEEECTTCCEEEEEE-EEEEEEEEEESCT-TCCGGGEEEHHHHHHTSCHHHHHHHHTCCTG
T ss_pred             --------cEEEEEeccCCEEEECCCCEEEEEeC-CCCcEEEEEECCC-CcccccceeeccccccCCHHHHHHhhCCCHH
Confidence                    35667999999999999999999997 5679999887775 4444445556899999999999999999999


Q ss_pred             HHHHhhcCCC
Q 039441          496 LIERVFGTNP  505 (539)
Q Consensus       496 ~v~kL~~~q~  505 (539)
                      ++++|+..+.
T Consensus       183 ~~~~i~~~e~  192 (372)
T d1j58a_         183 EISNLPGKEK  192 (372)
T ss_dssp             GGTTSCSSCC
T ss_pred             HHhhcccccc
Confidence            9999987653

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.88  E-value=8.6e-22  Score=202.18  Aligned_cols=273  Identities=17%  Similarity=0.175  Sum_probs=167.5

Q ss_pred             CCCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCee--eccccc-CCCcEEEEEeceEEEEEE
Q 039441          161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTL--VVPHHS-DAETILVLLKGKGVITLV  237 (539)
Q Consensus       161 ~~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l--~lPh~~-dA~~~~yV~~G~g~i~~v  237 (539)
                      ..|||...-.-....---++.++.+-.    .+.-.  ..+.+..+.+.|++-  ..|||| ++++++||++|++.+.+.
T Consensus        12 ~~p~vi~~~~~~~~~~~g~~~~~~~~~----~~~t~--g~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~   85 (348)
T d1juha_          12 VRPYVIRHYSHARAVTVDTQLYRFYVT----GPSSG--YAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQ   85 (348)
T ss_dssp             CCCEEECTTCCTTCEEETTEEEEEEEC----HHHHT--TSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEE
T ss_pred             CCCEEecCCCCceEEecCCCEEEEEec----cccCC--CeEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEe
Confidence            468887654432322233344543111    01111  245666677789874  478966 688999999999999998


Q ss_pred             eCC-CceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCcee------ccc------------c-CccE
Q 039441          238 SHE-RRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRV------QQR------------Q-QGTI  297 (539)
Q Consensus       238 ~pg-~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~~------~~q------------~-~G~I  297 (539)
                      +.+ ..+++.|++||+|+||+|++|++.|.++  ..+++.++.++..-.-|..      ...            . .+.+
T Consensus        86 ~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~--~~~~l~v~~pg~~e~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (348)
T d1juha_          86 SGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP--DTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPD  163 (348)
T ss_dssp             ETTSCCEEEEEETTCEEEECTTEEEEEEECST--TEEEEEEEESSCTTHHHHHHSEECCCTTCCSSCCC-----------
T ss_pred             ccCCceEEEEeCCCCEEEECCCCeEeeEeCCC--CcEEEEEECCCcHHHHHHhhCCchhccCCcccccccccchhhccCC
Confidence            865 4578999999999999999999999984  4567777776542111110      000            0 0011


Q ss_pred             EEcChhhhhhc---------Cc-cc-------cccCCC-----CCCCCcceecCCC-CCcccC--CCceEEE---eCCcc
Q 039441          298 KRASQEQLKAL---------SH-HA-------SSRRRH-----GRGSTAPFNLLSR-KPIYNN--NFGRFFE---ATPKD  349 (539)
Q Consensus       298 vrv~~eql~~l---------~~-~~-------~~~~~~-----~~~~~~~fnl~~~-~p~~sn--~~G~i~~---~~~~~  349 (539)
                      ... .+++..+         +. ..       ...|..     ......+|.+... .+.+.+  ..|.+..   .+...
T Consensus       164 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~i~~~~~~~~~t  242 (348)
T d1juha_         164 SST-ISTLQSFDVYAELSFTPRTDTVNGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQA  242 (348)
T ss_dssp             ----CGGGGGGTCEECTTCCCCCCCBTTEESSSSCSSSSCCCCCSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHH
T ss_pred             hhh-hccccccccccccccCCccccccccccccccccccccccccccCcceEeecccCcccccccCCceEEeeeeccccc
Confidence            111 0111100         00 00       000110     1112346766532 333322  2333322   22223


Q ss_pred             cccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEee
Q 039441          350 YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISAN  429 (539)
Q Consensus       350 fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~  429 (539)
                      ++.  ...+++..+.+.||++..||||+++++|+||++|+++++|.+..                            +..
T Consensus       243 ~~~--~~~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~~~----------------------------~~~  292 (348)
T d1juha_         243 QDT--NYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYA----------------------------ATE  292 (348)
T ss_dssp             GGG--CEEEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETTSC----------------------------CEE
T ss_pred             CCc--ccceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeCCcc----------------------------eEE
Confidence            333  23588999999999999999999999999999999999995431                            246


Q ss_pred             eCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccc
Q 039441          430 LSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG  473 (539)
Q Consensus       430 L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG  473 (539)
                      |++||+++||+|.+|.+.|.++ ...++.|...+.....+|+++
T Consensus       293 l~~GD~~~vP~g~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~~~  335 (348)
T d1juha_         293 LGSGDVAFIPGGVEFKYYSEAY-FSKVLFVSSGSDGLDQNLVNG  335 (348)
T ss_dssp             ECTTCEEEECTTCCEEEEESSS-SEEEEEEEESSSSHHHHHHHH
T ss_pred             ecCCCEEEECCCCcEEEEeCCC-CcEEEEEEcCCCchHHHHHhc
Confidence            9999999999999999999865 567777766653445556654

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.84  E-value=7.2e-21  Score=179.56  Aligned_cols=105  Identities=23%  Similarity=0.398  Sum_probs=85.0

Q ss_pred             ccCCCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccc-cCCCcEEEEEeceEEEEEE
Q 039441          159 EENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH-SDAETILVLLKGKGVITLV  237 (539)
Q Consensus       159 ~~~~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~-~dA~~~~yV~~G~g~i~~v  237 (539)
                      ++++||.+...  .+++.+++|.+..  .+..+.+.|+++ ++.++.++|+|+|+++||| .+|++|+||++|+|+|++|
T Consensus         5 ~~~~pfnl~~~--~p~~~n~~G~~~~--~~~~~~p~L~~~-~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v   79 (185)
T d1uika2           5 SEDKPFNLRSR--DPIYSNKLGKLFE--ITPEKNPQLRDL-DVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELV   79 (185)
T ss_dssp             CSSSCEETTSS--CCSEESSSEEEEE--ECTTTCHHHHHH-TEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEE
T ss_pred             cCCCccccccC--CCceeCCCCeEEE--eChhhChhhhhc-CchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEE
Confidence            45788766554  5899999999886  345556888854 4555555669999999997 6999999999999999999


Q ss_pred             eCCCc---------------eeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          238 SHERR---------------ESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       238 ~pg~~---------------~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      .|+|.               .+++|++||||+||+|++||++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d  125 (185)
T d1uika2          80 GIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSD  125 (185)
T ss_dssp             EC------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSS
T ss_pred             ccCccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCC
Confidence            99874               36789999999999999999999874

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.9e-19  Score=181.48  Aligned_cols=238  Identities=16%  Similarity=0.131  Sum_probs=145.5

Q ss_pred             EecCCceEEEeeccCccccccc-CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEE
Q 039441          175 VRSDSGHMRVLQRFSQKSHLLR-GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVI  253 (539)
Q Consensus       175 v~se~G~i~vl~~f~~~s~~l~-gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~  253 (539)
                      +..+.+.-++|...+.....-. ....+.+.|..|.|++..-||+|++++++||++|+|.+++++.   +.+.+.+||+|
T Consensus        27 ~~~~~~~rr~~~l~np~~~~~~~~~~~l~~~~~~l~PG~~~~~H~H~~~e~~~vl~G~g~~t~~~~---~~~~~~~Gd~~  103 (308)
T d2d40a1          27 IGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDG---ERTPMNEGDFI  103 (308)
T ss_dssp             -----------EECCSSCTTSCCSSSSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETT---EEEECCTTCEE
T ss_pred             cCcccCceEEEEeeCCCcCCCcccCccceeeeEEECCCCccccccCchhheEEEEEeeEEEEEecC---EEEEecCCCEE
Confidence            3445555555544443221111 2345678888899999999999999999999999999988874   47899999999


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEEeccCC---CCCCcee----ccccCccEEEcChhhhhhcCcccc--ccCCCCCCCCc
Q 039441          254 SVPAGTTYYLSNQDNVDRLHVAKLLQPVN---TPGQFRV----QQRQQGTIKRASQEQLKALSHHAS--SRRRHGRGSTA  324 (539)
Q Consensus       254 ~iPaG~~h~i~N~g~~e~L~iv~l~d~~n---~pg~f~~----~~q~~G~Ivrv~~eql~~l~~~~~--~~~~~~~~~~~  324 (539)
                      ++|+|+.|++.|+| ++++.++.++|...   ....|..    ..+..   .......+........  ...........
T Consensus       104 ~~P~~~~H~~~n~g-~e~~~~l~~~d~pl~~~l~~~f~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (308)
T d2d40a1         104 LTPQWRWHDHGNPG-DEPVIWLDGLDLPLVNILGCGFAEDYPEEQQPV---TRKEGDYLPRYAANMLPLRHQTGNSSPIF  179 (308)
T ss_dssp             EECTTSCEEEECCS-SSCEEEEEEECHHHHHHHTCCCEEECC--CCCC---CSCTTTHHHHHSSSEECSSCCCCSSCSCC
T ss_pred             EeCCCceEEeEECC-CCCEEEEEEeccchhhhcCeeeeccCccccccc---ccCccchhhhcccccccccccccccCccc
Confidence            99999999999998 68899998886321   0112211    00000   0000000000000000  00000000001


Q ss_pred             ce------e-c---CCCCCcccCCCceEEEeCCccc-ccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEE
Q 039441          325 PF------N-L---LSRKPIYNNNFGRFFEATPKDY-QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFE  393 (539)
Q Consensus       325 ~f------n-l---~~~~p~~sn~~G~i~~~~~~~f-P~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~  393 (539)
                      .|      . |   ....+.-...++.+..+++.+. +.+..  +.+....|.||++..+|+| ++.+|.||++|+|++.
T Consensus       180 ~~~~~~~~~~L~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~t--~~~~~~~l~pG~~~~~h~h-~~~~~~~v~~G~g~~~  256 (308)
T d2d40a1         180 NYRYDRSREVLHDLTRLGDADEWDGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVART-TDSTIYHVVEGSGQVI  256 (308)
T ss_dssp             EECHHHHHHHHHHHHTTSCCBTTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEE-SSCEEEEEEEEEEEEE
T ss_pred             ccchhhHHHHHHHHHhccCCCCCCceEEEeeccccccCccce--eEEEEEEccCCCccCCccC-ChheEEEEEeCcEEEE
Confidence            11      0 0   1111111223455666665543 55554  7788889999999999999 6789999999999988


Q ss_pred             EecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441          394 MGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN  451 (539)
Q Consensus       394 vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn  451 (539)
                      |   ++                        +.  ..+++||||+||+++.|...|+++
T Consensus       257 v---~~------------------------~~--~~~~~GD~~~vP~~~~h~~~~~~d  285 (308)
T d2d40a1         257 I---GN------------------------ET--FSFSAKDIFVVPTWHGVSFQTTQD  285 (308)
T ss_dssp             E---TT------------------------EE--EEEETTCEEEECTTCCEEEEEEEE
T ss_pred             E---CC------------------------EE--EEEeCCCEEEeCCCCeEEEEcCCC
Confidence            7   22                        23  479999999999999999999754

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=5.7e-18  Score=171.63  Aligned_cols=226  Identities=18%  Similarity=0.186  Sum_probs=139.1

Q ss_pred             eeeEEEeeeCCCeeeccccc-CCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          200 NYRLAILEANPSTLVVPHHS-DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~-dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .+.+..+++.|++-.-||+| ++++++||++|++.+.+    .-+++.|.+||++++|+|++|++.|.++  +..++.++
T Consensus        41 ~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~n~~~--~~~~l~~~  114 (330)
T d1y3ta1          41 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL----DGERYLLISGDYANIPAGTPHSYRMQSH--RTRLVSYT  114 (330)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECST--TEEEEEEE
T ss_pred             cEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE----CCEEEEEcCCCEEEeCCCCeEEEEEcCC--CeEEEEEE
Confidence            45666677799999999955 68999999999999975    2357999999999999999999999984  45666666


Q ss_pred             ccCCCCCCcee-c-----cc-cCccEEEcChhhhhhcCccc------cccCC---------CCCCCCcceecCCCCCccc
Q 039441          279 QPVNTPGQFRV-Q-----QR-QQGTIKRASQEQLKALSHHA------SSRRR---------HGRGSTAPFNLLSRKPIYN  336 (539)
Q Consensus       279 d~~n~pg~f~~-~-----~q-~~G~Ivrv~~eql~~l~~~~------~~~~~---------~~~~~~~~fnl~~~~p~~s  336 (539)
                      .+.....-|.. +     .. ..-....+....+.......      ...+.         .......+|.+.......-
T Consensus       115 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~  194 (330)
T d1y3ta1         115 MKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRL  194 (330)
T ss_dssp             ETTSSTHHHHHHSEECSCSSCCSSCCCCCTTCTTGGGTSSCEECCCCCCCSSCSCEECCBCSCCSSSCCEEECTTCSEEE
T ss_pred             CCccHHHhhhhhceecccccCCccccccccccccccccccccccccccccccccccccccccCCccceeeEEEcccCceE
Confidence            65443211111 0     00 00000000000000000000      00000         0000111232222211111


Q ss_pred             CCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHH
Q 039441          337 NNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEE  416 (539)
Q Consensus       337 n~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~  416 (539)
                      ...|.++.+....-...  -.+++..+.+.||+...||||+.++++.||++|++.+.+   ++                 
T Consensus       195 ~~~g~~~~~~~~~~~t~--~~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v---~~-----------------  252 (330)
T d1y3ta1         195 LTGDQLHRIVAAQKNTD--GQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DG-----------------  252 (330)
T ss_dssp             EETTEEEEEEECGGGTT--TSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TT-----------------
T ss_pred             ecCCceEEEcCCCcccC--CcEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEE---CC-----------------
Confidence            11233222222211222  247888999999999999999889999999999999966   22                 


Q ss_pred             HhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          417 EESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       417 e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                             +.  ..|++||+++||+|.+|.+.|.+ +++.+|.+.+.+
T Consensus       253 -------~~--~~~~~Gd~~~vP~g~~H~~~~~~-~~~~~l~~~~p~  289 (330)
T d1y3ta1         253 -------QE--IQLNPGDFLHVPANTVHSYRLDS-HYTKMVGVLVPG  289 (330)
T ss_dssp             -------EE--EEECTTCEEEECTTCCEEEEECS-SSEEEEEEEESS
T ss_pred             -------EE--EEeCCCCEEEECcCCcEEeEeCC-CCeEEEEEECCc
Confidence                   22  57999999999999999999975 468888775443

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.77  E-value=6.4e-18  Score=173.65  Aligned_cols=221  Identities=15%  Similarity=0.156  Sum_probs=145.0

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ..+-..|..|.||...-||+|++++|.||++|+|++++|+.   +.+.+.+||+|++|+|+.|+..|++ ++.+.++.++
T Consensus        85 ~~l~~~~~~l~PGe~~~~H~H~~~~~~~vi~G~g~~t~v~g---~~~~~~~GD~~~~P~~~~H~~~n~~-d~~~~~l~~~  160 (351)
T d2phda1          85 PTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNG---DPVRMSRGDLLLTPGWCFHGHMNDT-DQPMAWIDGL  160 (351)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECEEEEEEETT---EEEEEETTCEEEECTTCCEEEEECS-SSCEEEEEEE
T ss_pred             chhhhheEEECCCCcCCccccccceeEEEEECCcEEEEECC---EEEEEeCCCEEEeCCCceEEEEEcC-CCCEEEEEee
Confidence            35556778889999999999999999999999999998864   4689999999999999999999998 5778888888


Q ss_pred             ccC---CCCCCcee-ccccCccEEEcChhhhhh------cCccccccCCCCCCCCcceec-----------------CCC
Q 039441          279 QPV---NTPGQFRV-QQRQQGTIKRASQEQLKA------LSHHASSRRRHGRGSTAPFNL-----------------LSR  331 (539)
Q Consensus       279 d~~---n~pg~f~~-~~q~~G~Ivrv~~eql~~------l~~~~~~~~~~~~~~~~~fnl-----------------~~~  331 (539)
                      |..   ..+..|.. ...............+..      +.|..   .........+|+.                 ...
T Consensus       161 d~pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~sp~~~yp~~~~~~al~~~~~~~~~~~  237 (351)
T d2phda1         161 DIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLS---GLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQ  237 (351)
T ss_dssp             CHHHHHHTTCCCEEECCC--CCCCCCSSCHHHHHHCSTTEEEGG---GCSCCSSCSCSEECHHHHHHHHHHHHHHHHTTC
T ss_pred             cCchhhhcccccccccccccccccCCccchhhhhccccccCccc---ccccccCCCcccCchHHHHhhhhhhhhcccccc
Confidence            753   11222222 000000000000000000      00000   0000000011111                 011


Q ss_pred             CCcccCCCceEEEeCCcc-cccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhh
Q 039441          332 KPIYNNNFGRFFEATPKD-YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQ  410 (539)
Q Consensus       332 ~p~~sn~~G~i~~~~~~~-fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~  410 (539)
                      .......++.+..+++.+ .+++..  |++....|.||.+..||+| ++.+|.||++|+|+++|   ++           
T Consensus       238 ~~~~~~g~~~l~yvnp~tg~~~~~t--~~~~~~~l~pG~~~~~hrh-~~~~v~~vi~G~g~~~i---~~-----------  300 (351)
T d2phda1         238 PATVAPGHAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNE-VGSTVFQVFEGAGAVVM---NG-----------  300 (351)
T ss_dssp             SCSSBTTEEEEEEBCTTTSSBSBTT--BEEEEEEECTTCBCCCEEE-SSCEEEEEEESCEEEEE---TT-----------
T ss_pred             cccccCcceeEEEeccccCCCcCCc--ceEEEEEecCCCcCCCccc-cCcEEEEEEeCcEEEEE---CC-----------
Confidence            111122344566666554 677766  7788888999999999999 67899999999999987   22           


Q ss_pred             hHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          411 QEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       411 ~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                                   ++  .++++||||+||+++.|.+.|.+  +..+++|.
T Consensus       301 -------------~~--~~~~~gDvf~vP~~~~h~~~n~~--~~~Lf~~~  333 (351)
T d2phda1         301 -------------ET--TKLEKGDMFVVPSWVPWSLQAET--QFDLFRFS  333 (351)
T ss_dssp             -------------EE--EEECTTCEEEECTTCCEEEEESS--CEEEEEEE
T ss_pred             -------------EE--EEEcCCCEEEeCCCCcEEEecCC--CeEEEEEC
Confidence                         23  58999999999999999999964  35555553

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=2.3e-17  Score=164.22  Aligned_cols=201  Identities=16%  Similarity=0.204  Sum_probs=138.1

Q ss_pred             ccccCcceeeEEEeeeCCCee-eccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCc
Q 039441          193 HLLRGIDNYRLAILEANPSTL-VVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVD  270 (539)
Q Consensus       193 ~~l~gv~~~Rl~il~l~P~~l-~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e  270 (539)
                      |++-+-+.+-.-+++++|++- ..|+ +.++.+++||++|++.+++    ..+++.|++||.++||+|+.|++.|.+ ++
T Consensus        58 p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~----~g~~~~L~~Gd~~y~P~g~~h~~~N~g-~~  132 (273)
T d1sq4a_          58 PLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL----QGQVHAMQPGGYAFIPPGADYKVRNTT-GQ  132 (273)
T ss_dssp             CSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE----SSCEEEECTTEEEEECTTCCEEEECCS-SS
T ss_pred             cccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEE----CCEEEEecCCCEEEECCCCcEeeeecC-CC
Confidence            444444556777888899985 4666 4678899999999999986    235789999999999999999999998 57


Q ss_pred             eEEEEEEeccCCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCC-Cce---EEEeC
Q 039441          271 RLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNN-FGR---FFEAT  346 (539)
Q Consensus       271 ~L~iv~l~d~~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~-~G~---i~~~~  346 (539)
                      .++++.+-........    ......++.                           |..+..|..... .+.   ...++
T Consensus       133 ~a~~l~i~k~y~~~~g----~~~p~~~v~---------------------------~~~dv~p~~~~~~~~~~~~~r~~~  181 (273)
T d1sq4a_         133 HTRFHWIRKHYQKVDG----VPLPEAFVT---------------------------NEQDIQPLVMPDTEGRWSTTRFVD  181 (273)
T ss_dssp             CEEEEEEEEECCCCTT----CCCCCCEEE---------------------------EGGGSCCEECSSGGGCEEEECSSC
T ss_pred             CEEEEEEEeccccccc----ccccccccc---------------------------ChhccCcccccCCCceeEEEEeeC
Confidence            8887765432211000    000001111                           111111111111 111   11122


Q ss_pred             CcccccccccceeEEEEEEcCCcee-cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceee
Q 039441          347 PKDYQQLQEIDAGVTYVEINQGGMM-VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQK  425 (539)
Q Consensus       347 ~~~fP~L~~l~isva~v~L~pGgm~-~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~  425 (539)
                      +.++    ..++.+..+.|.||+-. .+|+|+ ..+++||++|+|.+.+   ++                        + 
T Consensus       182 p~d~----~~d~~~~i~~~~PG~~~~~~h~H~-~ee~~~vl~G~~~~~~---~~------------------------~-  228 (273)
T d1sq4a_         182 MSDM----RHDMHVNIVNFEPGGVIPFAETHV-MEHGLYVLEGKAVYRL---NQ------------------------D-  228 (273)
T ss_dssp             TTCT----TCSEEEEEEEECSSSEESCCCCCS-EEEEEEEEECEEEEEE---TT------------------------E-
T ss_pred             Cccc----ccceEEEEEEEccCCccccccccc-cceEEEEEccEEEEEE---CC------------------------E-
Confidence            2221    23689999999999855 479995 5799999999999877   22                        1 


Q ss_pred             EEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          426 ISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       426 ~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                       ...|++||+++||++.+|+++|.|++++.+|.+++-+
T Consensus       229 -~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~~kd~n  265 (273)
T d1sq4a_         229 -WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVN  265 (273)
T ss_dssp             -EEEEETTCEEEEEESCCEEEECCSSSCEEEEEEEECS
T ss_pred             -EEEecCCCEEEECCCCCEEeEeCCCCCEEEEEEEEcC
Confidence             2679999999999999999999999999999877553

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=2.8e-17  Score=161.15  Aligned_cols=192  Identities=11%  Similarity=0.079  Sum_probs=131.5

Q ss_pred             eeEEEeeeCCCeeec-cc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          201 YRLAILEANPSTLVV-PH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       201 ~Rl~il~l~P~~l~l-Ph-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      +-+.+++|.|++-.. |+ +.+..+++||++|++.+++-    .+++.|.+||.++||+|++|.+.|.+ +++++|+.+-
T Consensus        48 f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~~----~~~~~l~~Gd~~~~p~~~~H~~~N~~-~~~~~~l~v~  122 (250)
T d1sefa_          48 FVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDG----QETHELEAGGYAYFTPEMKMYLANAQ-EADTEVFLYK  122 (250)
T ss_dssp             SEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECS----SCEEEEETTEEEEECTTSCCEEEESS-SSCEEEEEEE
T ss_pred             EEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEEC----CEEEEEcCCCEEEEcCCCcEEEEECC-CCCEEEEEEE
Confidence            445567779988654 44 45667899999999988862    35789999999999999999999998 5788877764


Q ss_pred             ccCCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccC--CCceEEEeCCccccccccc
Q 039441          279 QPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNN--NFGRFFEATPKDYQQLQEI  356 (539)
Q Consensus       279 d~~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn--~~G~i~~~~~~~fP~L~~l  356 (539)
                      ......                     ....|.+           ..-+..+..+...+  ...+...+.    |.-...
T Consensus       123 ~~y~~~---------------------~~~~p~~-----------~~~~~~~~e~~~~~~~~~~~~~~~~----p~~~~~  166 (250)
T d1sefa_         123 KRYQPL---------------------AGHQPYK-----------VVGSIHDQQPEEYEGMTDVLLWSLL----PKEFDF  166 (250)
T ss_dssp             EECCCC---------------------TTCCCCC-----------EEEEGGGSCCEEGGGCTTEEEEECS----CSSTTC
T ss_pred             Eecccc---------------------ccccccc-----------cccccccccccccCCccccceEEec----Cccccc
Confidence            321110                     0000000           00011111111111  112222332    222334


Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..+.|.||+....|++....+++||++|+|.+.+   ++                        +.  ..|++||++
T Consensus       167 ~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~---~~------------------------~~--~~~~~GD~i  217 (250)
T d1sefa_         167 DMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DN------------------------EW--YPVEKGDYI  217 (250)
T ss_dssp             SEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TT------------------------EE--EEEETTCEE
T ss_pred             cEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE---CC------------------------EE--EEecCCCEE
Confidence            68999999999999976665588999999999999877   22                        12  579999999


Q ss_pred             EeCCCCeEEEEcCC-CCcEEEEEEeec
Q 039441          437 IIPPGHPIALVASP-NEKLLTVGFSLN  462 (539)
Q Consensus       437 vVPaG~~h~i~n~g-ne~l~~v~F~~n  462 (539)
                      +||++.+|++.|.| ++++.++.+.+.
T Consensus       218 ~~~~~~pH~~~n~G~~~~~~~l~~k~~  244 (250)
T d1sefa_         218 FMSAYVPQAAYAVGREEPLMYVYSKDA  244 (250)
T ss_dssp             EECTTCCEEEEEECSSSCEEEEEEEEC
T ss_pred             EECCCCCEEeEcCCCCCcEEEEEEecC
Confidence            99999999999998 567888866544

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=99.75  E-value=7.5e-17  Score=165.95  Aligned_cols=225  Identities=12%  Similarity=0.074  Sum_probs=145.5

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+-..|..+.|+....+|+|++..|.||+.|+|+.|+|+.+   ...+.+||+|++|+|+.|...|.++++.++.+.+.|
T Consensus        84 ~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v~ge---~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D  160 (355)
T d3bu7a1          84 WLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGH---KVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD  160 (355)
T ss_dssp             TBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTE---EEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred             hhhhheEeeCCCCcCcccccccceeEEEEECCcEEEEECCE---EEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEecc
Confidence            35566777899999999999999999999999999988643   578999999999999999999987667776666555


Q ss_pred             cC---CCCCCcee-ccccC-ccEEEcChhhhhhcCcccccc-CCCCCCCCcce------------ecCCCCCcccCCCce
Q 039441          280 PV---NTPGQFRV-QQRQQ-GTIKRASQEQLKALSHHASSR-RRHGRGSTAPF------------NLLSRKPIYNNNFGR  341 (539)
Q Consensus       280 ~~---n~pg~f~~-~~q~~-G~Ivrv~~eql~~l~~~~~~~-~~~~~~~~~~f------------nl~~~~p~~sn~~G~  341 (539)
                      ..   +....|.. ..... -..........+...+..... ..........+            .+....+.....++.
T Consensus       161 ~Pl~~~l~~~f~e~~p~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~sp~~~ypw~~~~~al~~~~~~~~~~~~~g~~  240 (355)
T d3bu7a1         161 IPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLI  240 (355)
T ss_dssp             HHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTTTBEE
T ss_pred             hHHHhhccceecccCchhcccccCCCccchhhhcccccccccccCCcccCcccccccccchHHHHHHHhcCCCCCCCceE
Confidence            31   11222221 00000 000000000000000000000 00000000011            112233333334556


Q ss_pred             EEEeCCcc-cccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhh
Q 039441          342 FFEATPKD-YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESS  420 (539)
Q Consensus       342 i~~~~~~~-fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~  420 (539)
                      +..+++.+ .+++..  |++....|.||....||+| ++.+|.||++|+|++.|   ++                     
T Consensus       241 l~y~nP~tg~~~~~t--i~~~~~~l~pG~~~~~hrH-~~~~v~~v~~G~g~~~i---~g---------------------  293 (355)
T d3bu7a1         241 LRYTNPQTGGHPMLT--MGASMQMLRPGEHTKAHRH-TGNVIYNVAKGQGYSIV---GG---------------------  293 (355)
T ss_dssp             EEECCTTTSSCSSSS--CEEEEEEECTTCBCCCEEE-SSCEEEEEEECCEEEEE---TT---------------------
T ss_pred             EEeccccccCCCcce--eeEEEEEECCCCccCCcCc-cCcEEEEEEECcEEEEE---CC---------------------
Confidence            76667654 356665  7888889999999999999 56789999999999988   22                     


Q ss_pred             cceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEE-EE
Q 039441          421 RELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV-GF  459 (539)
Q Consensus       421 ~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v-~F  459 (539)
                         +.  +.+++||||+||.+..|...|.++++..+| .|
T Consensus       294 ---~~--~~~~~GDv~~vP~~~~h~~~N~s~~e~~~Lf~~  328 (355)
T d3bu7a1         294 ---KR--FDWSEHDIFCVPAWTWHEHCNTQERDDACLFSF  328 (355)
T ss_dssp             ---EE--EEECTTCEEEECTTCCEEEEECCSSCCEEEEEE
T ss_pred             ---EE--EEeeCCCEEEeCCCCcEEeecCCCCCcEEEEEe
Confidence               23  589999999999999999999887654444 44

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.72  E-value=1.9e-17  Score=154.50  Aligned_cols=100  Identities=17%  Similarity=0.265  Sum_probs=83.1

Q ss_pred             eeEecCCceEEEeeccCccc-cccc--CcceeeEEEeeeCCCeeecccc-cCCCcEEEEEeceEEEEEEeCCCce--eee
Q 039441          173 YRVRSDSGHMRVLQRFSQKS-HLLR--GIDNYRLAILEANPSTLVVPHH-SDAETILVLLKGKGVITLVSHERRE--SFN  246 (539)
Q Consensus       173 ~~v~se~G~i~vl~~f~~~s-~~l~--gv~~~Rl~il~l~P~~l~lPh~-~dA~~~~yV~~G~g~i~~v~pg~~~--~~~  246 (539)
                      ..+..++|+|..   ++..+ |.|.  ||+..|+.|   +|+|+++||| .+|++|+||++|+|++++|.+++.+  +++
T Consensus        17 d~~~~~gG~i~~---~~~~~fP~L~~~~~s~~~~~l---~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~   90 (174)
T d1fxza2          17 DIYNPQAGSVTT---ATSLDFPALSWLRLSAEFGSL---RKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGE   90 (174)
T ss_dssp             SEEETTTEEEEE---ECTTTSGGGTTTTCCEEEEEE---CTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEE
T ss_pred             CcCcCCCeEEEE---ecHHHhhhhhhcCceEEEeee---cCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEE
Confidence            356778999986   55555 7777  778888877   9999999997 5999999999999999999998765  456


Q ss_pred             cCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          247 MEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       247 v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      |++|||++||+|++||++|.+  +.+.++.++..
T Consensus        91 l~~Gdv~vvP~G~~h~~~n~~--~~~~~v~~~~~  122 (174)
T d1fxza2          91 LQEGRVLIVPQNFVVAARSQS--DNFEYVSFKTN  122 (174)
T ss_dssp             EETTCEEEECTTCEEEEEECS--TTEEEEEEESS
T ss_pred             EcCCcEEEECCCCEEEEEeCC--CCeEEEEEEcc
Confidence            999999999999999999976  34566666543

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.71  E-value=1.2e-17  Score=154.22  Aligned_cols=85  Identities=21%  Similarity=0.249  Sum_probs=71.2

Q ss_pred             ccccCcceeeEEEeeeCCCeeecccc-cCCCcEEEEEeceEEEEEEeCCCce--------eeecCCCcEEEeCCCCeEEE
Q 039441          193 HLLRGIDNYRLAILEANPSTLVVPHH-SDAETILVLLKGKGVITLVSHERRE--------SFNMEHGDVISVPAGTTYYL  263 (539)
Q Consensus       193 ~~l~gv~~~Rl~il~l~P~~l~lPh~-~dA~~~~yV~~G~g~i~~v~pg~~~--------~~~v~~GDV~~iPaG~~h~i  263 (539)
                      +.+.+.-+|+++.++|+|+++++||| .+|++|+||++|+|++++|.|++..        +.+|++||||+||+|++||+
T Consensus        12 ~~~~n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~   91 (162)
T d2phla2          12 ERTDNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAI   91 (162)
T ss_dssp             EEEETTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEE
T ss_pred             ecCCCCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEE
Confidence            44556668999999999999999997 8999999999999999999998653        56899999999999999999


Q ss_pred             EecCCCceEEEEEEe
Q 039441          264 SNQDNVDRLHVAKLL  278 (539)
Q Consensus       264 ~N~g~~e~L~iv~l~  278 (539)
                      +|++ +.++.++.+.
T Consensus        92 ~n~~-~~~~v~~~~~  105 (162)
T d2phla2          92 KATS-NVNFTGFGIN  105 (162)
T ss_dssp             EESS-SEEEEEEEES
T ss_pred             EeCC-CceEEEEEec
Confidence            9987 4555444333

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.71  E-value=3.5e-16  Score=152.99  Aligned_cols=190  Identities=14%  Similarity=0.113  Sum_probs=133.5

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .+-.-+++|.|++-.  +.+..++++||++|++.+++    ..+++.|.+||.++||+|+.|.+.|.+ +..++++....
T Consensus        49 ~F~~~~v~~~pGg~~--~~~~~E~~~~Vl~G~~~~~~----~g~~~~l~~G~~~~~P~g~~h~~~n~~-~~~~~~~~~~~  121 (245)
T d1sfna_          49 RFVQFTAEMPAGAQA--TESVYQRFAFVLSGEVDVAV----GGETRTLREYDYVYLPAGEKHMLTAKT-DARVSVFEKPY  121 (245)
T ss_dssp             SSEEEEEEECTTCEE--ECCSSEEEEEEEEEEEEEEC----SSCEEEECTTEEEEECTTCCCEEEEEE-EEEEEEEEECC
T ss_pred             ceEEEEEEECCCCCC--CCCCccEEEEEEECEEEEEE----CCEEEEecCCCEEEeCCCCcEEEEeCC-CccEEEEEeec
Confidence            455667788999853  44577999999999999885    235889999999999999999999998 46666543221


Q ss_pred             c-CCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCC--CcccCCCceEEEeCCccccccccc
Q 039441          280 P-VNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRK--PIYNNNFGRFFEATPKDYQQLQEI  356 (539)
Q Consensus       280 ~-~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~--p~~sn~~G~i~~~~~~~fP~L~~l  356 (539)
                      . ...       ......++.                           +..+..  |......+.+..+.+.+    ...
T Consensus       122 ~~~~~-------~~~P~~~~~---------------------------~~~~~~~~p~~~~~~~~~r~l~p~~----~~~  163 (245)
T d1sfna_         122 QTVEG-------VQAPGVYWG---------------------------NERENPGYPFEGDDHLIARKLLPDE----PAF  163 (245)
T ss_dssp             CCBTT-------BCCCCCEEE---------------------------ETTTCCCEETTSCTTEEEEECSCCC----TTC
T ss_pred             ccccc-------cCCCcceec---------------------------ccccccccCCccccceEEEecCCcc----ccc
Confidence            0 000       000000000                           000000  01112244455554332    344


Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..++|+||+-+.+|+|....+++||++|+|.+.+   ++                        +  ...|++||++
T Consensus       164 ~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i---~~------------------------~--~~~v~~GD~i  214 (245)
T d1sfna_         164 DFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EE------------------------N--YYPVTAGDII  214 (245)
T ss_dssp             SEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TT------------------------E--EEEEETTCEE
T ss_pred             ceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE---CC------------------------E--EEEecCCCEE
Confidence            68899999999999888775588899999999999877   22                        1  2579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      ++|++.+|++.|.|++++.+|.+.+-+
T Consensus       215 ~~~~~~~H~~~n~g~~~~~~l~~k~~~  241 (245)
T d1sfna_         215 WMGAHCPQWYGALGRNWSKYLLYKDMN  241 (245)
T ss_dssp             EECTTCCEEEEEESSSCEEEEEEEECS
T ss_pred             EECCCCCEeeEeCCCCCEEEEEEecCC
Confidence            999999999999999999999877654

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.70  E-value=3.2e-17  Score=152.98  Aligned_cols=98  Identities=15%  Similarity=0.319  Sum_probs=81.8

Q ss_pred             eEecCCceEEEeeccCccc-cccc--CcceeeEEEeeeCCCeeeccccc-CCCcEEEEEeceEEEEEEeCCCcee--eec
Q 039441          174 RVRSDSGHMRVLQRFSQKS-HLLR--GIDNYRLAILEANPSTLVVPHHS-DAETILVLLKGKGVITLVSHERRES--FNM  247 (539)
Q Consensus       174 ~v~se~G~i~vl~~f~~~s-~~l~--gv~~~Rl~il~l~P~~l~lPh~~-dA~~~~yV~~G~g~i~~v~pg~~~~--~~v  247 (539)
                      .+...+|+|..   .+..+ |.|.  ||+..++.|   .|+|+++|||| +|++|+||++|+|++++|++++.+.  ++|
T Consensus        23 ~~n~~gG~i~~---~~~~~fP~L~~lgls~~~v~L---~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l   96 (173)
T d1od5a2          23 FYNPKAGRIST---LNSLTLPALRQFGLSAQYVVL---YRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGEL   96 (173)
T ss_dssp             EEETTTEEEEE---ESTTTCTTHHHHTCEEEEEEE---CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred             ccCCCCeEEEE---ecHHHhhhhhhccceEEEEEE---cCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEe
Confidence            46668999985   55555 7777  677666666   99999999975 9999999999999999999987654  569


Q ss_pred             CCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          248 EHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       248 ~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      ++|||++||+|++||++|.+  +.+.++.++.
T Consensus        97 ~~Gdv~~iP~G~~h~~~n~~--~~~~~v~~~~  126 (173)
T d1od5a2          97 RRGQLLVVPQNFVVAEQGGE--QGLEYVVFKT  126 (173)
T ss_dssp             ETTCEEEECTTCEEEEEEEE--EEEEEEEEES
T ss_pred             cCCcEEEECCCCEEEEEcCC--CceEEEEeec
Confidence            99999999999999999965  5677777765

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.1e-16  Score=154.96  Aligned_cols=191  Identities=11%  Similarity=0.084  Sum_probs=124.9

Q ss_pred             ceeeEEEeeeCCCeeec-cc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          199 DNYRLAILEANPSTLVV-PH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~l-Ph-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      +.+.+.+++|.|++-.- |+ ++++++++||++|++.+.+    ..+++.|.+||++++|+|+.|++.|.+ +++++++.
T Consensus        49 ~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~p~~~~H~~~N~~-~~~~~~l~  123 (253)
T d1rc6a_          49 ASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA----EGKTFALSEGGYLYCPPGSLMTFVNAQ-AEDSQIFL  123 (253)
T ss_dssp             CSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE----TTEEEEEETTEEEEECTTCCCEEEECS-SSCEEEEE
T ss_pred             CceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEE
Confidence            34555666779987654 33 3567789999999999986    235899999999999999999999999 57888776


Q ss_pred             EeccCCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCc-cc-CCCceEEEeCCccccccc
Q 039441          277 LLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPI-YN-NNFGRFFEATPKDYQQLQ  354 (539)
Q Consensus       277 l~d~~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~-~s-n~~G~i~~~~~~~fP~L~  354 (539)
                      +.........                     ..+...           .-+.....+. .. .....+..+.+.    -.
T Consensus       124 v~~~~~~~~~---------------------~~~~~~-----------~~~~~d~~~~~~~~~~~~~~~~~~p~----~~  167 (253)
T d1rc6a_         124 YKRRYVPVEG---------------------YAPWLV-----------SGNASELERIHYEGMDDVILLDFLPK----EL  167 (253)
T ss_dssp             EEEECCCCTT---------------------CCCCCE-----------EEEGGGSCCC-------CEEEECSCC----ST
T ss_pred             EEeccccCCC---------------------ccceee-----------cccccccccccccccceeEEEEecCc----cc
Confidence            6542221100                     000000           0000000000 00 011223333332    22


Q ss_pred             ccceeEEEEEEcCCceec-ceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCC
Q 039441          355 EIDAGVTYVEINQGGMMV-PHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG  433 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~-PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G  433 (539)
                      ..++.+..+.|.||+... +|+| ...+++||++|+|.+.+   ++                        +.  ..|++|
T Consensus       168 ~~~~~~~~~~~~PG~~~~~~h~h-~~ee~~~vl~G~g~~~i---~~------------------------~~--~~~~~G  217 (253)
T d1rc6a_         168 GFDMNMHILSFAPGASHGYIETH-VQEHGAYILSGQGVYNL---DN------------------------NW--IPVKKG  217 (253)
T ss_dssp             TCSEEEEEEEECTTCCBEEEEEE-SSCEEEEEEESEEEEES---SS------------------------CE--EEEETT
T ss_pred             cccEEEEEEEECCCceEeEEEeC-CceEEEEEeCCEEEEEE---CC------------------------EE--EEecCC
Confidence            346899999999998765 6777 78899999999999876   22                        12  579999


Q ss_pred             cEEEeCCCCeEEEEcCCC-CcEEEEEEe
Q 039441          434 VVFIIPPGHPIALVASPN-EKLLTVGFS  460 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~gn-e~l~~v~F~  460 (539)
                      |+++||+|.||+..|.|. +.+.++...
T Consensus       218 D~i~~~~~~ph~~~~~g~~~~~~~~~~~  245 (253)
T d1rc6a_         218 DYIFMGAYSLQAGYGVGRGEAFSYIYSK  245 (253)
T ss_dssp             CEEEECSSEEEEEEEC----CEEEEEEE
T ss_pred             CEEEECCCCCEeeeeCCCCCcEEEEEEE
Confidence            999999999999999985 446666543

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.55  E-value=1.6e-14  Score=137.48  Aligned_cols=106  Identities=16%  Similarity=0.198  Sum_probs=84.0

Q ss_pred             cCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeeccccc-CCCcEEEEEeceEEEEEEeC---CC-ceeeecCC
Q 039441          177 SDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHS-DAETILVLLKGKGVITLVSH---ER-RESFNMEH  249 (539)
Q Consensus       177 se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~-dA~~~~yV~~G~g~i~~v~p---g~-~~~~~v~~  249 (539)
                      .-+|.+..  .+..+-|.|.  ||+.+|+.|   .|+|+..|||| +|++|+||++|+++++++.+   +. ..+..|++
T Consensus        51 ~~g~~vt~--~~~~~fP~Ln~lglS~~rv~l---~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~  125 (201)
T d2et1a1          51 PNGSAVTE--LDVAEWPGTNTLGVSMNRVDF---APGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRA  125 (201)
T ss_dssp             TTSEEEEE--ESTTTCGGGTTSSCEEEEEEE---CTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECT
T ss_pred             CCCcEEEE--eehhcCccccccceeEEEEEE---CCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecC
Confidence            34566553  3444447777  788888888   99999999986 89999999999999999875   33 34789999


Q ss_pred             CcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCcee
Q 039441          250 GDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRV  289 (539)
Q Consensus       250 GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~~  289 (539)
                      ||||+||+|++||++|.+ +++++++.+|++ .+||...+
T Consensus       126 GDv~vvP~G~~H~~~N~g-~~~a~~i~~f~s-~~pg~~~~  163 (201)
T d2et1a1         126 GETFVIPRGLMHFQFNVG-KTEAYMVVSFNS-QNPGIVFV  163 (201)
T ss_dssp             TCEEEECTTCCEEEEECS-SSCEEEEEEESS-SCCCCEEH
T ss_pred             CCEEEECCCCeEEEEEcC-CCCEEEEEEecC-CCCcceeh
Confidence            999999999999999999 577877777753 45665444

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.25  E-value=1.1e-11  Score=106.05  Aligned_cols=78  Identities=22%  Similarity=0.370  Sum_probs=69.2

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .++.+..+.+.|++-+-+|||++++++||++|+|.+.+   ++.+.+.|++||++++|+|++|++.|.+ +++|.++.+.
T Consensus        24 ~~~~v~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v---~~~e~~~v~~Gd~i~ip~~~~H~~~n~~-~e~l~~l~v~   99 (108)
T d2b8ma1          24 EHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQEPHNYKEGNIVYVPFNVKMLIQNIN-SDILEFFVVK   99 (108)
T ss_dssp             SSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSCCEEEETTCEEEECTTCEEEEECCS-SSEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcChhhcccccEEEEEEeeeEEEEE---ecccEEEeecceEeeccCCceEEEEcCC-CCcEEEEEEE
Confidence            45667777889999999999999999999999999987   5556789999999999999999999998 5889998887


Q ss_pred             cc
Q 039441          279 QP  280 (539)
Q Consensus       279 d~  280 (539)
                      .|
T Consensus       100 ~P  101 (108)
T d2b8ma1         100 AP  101 (108)
T ss_dssp             CS
T ss_pred             CC
Confidence            65

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.25  E-value=1.5e-11  Score=112.18  Aligned_cols=86  Identities=19%  Similarity=0.329  Sum_probs=74.3

Q ss_pred             ccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCC-----CceeeecCCCcEEEeCCCCeEEEEecCCC
Q 039441          195 LRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHE-----RRESFNMEHGDVISVPAGTTYYLSNQDNV  269 (539)
Q Consensus       195 l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg-----~~~~~~v~~GDV~~iPaG~~h~i~N~g~~  269 (539)
                      +.|...+.+.+.++.|++-.-|||+++.+++||++|++.+.+-...     ..+.+.|++||+++||+|++|++.|+|++
T Consensus        35 ~~g~~~i~v~~~~l~PG~~~~~H~H~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~  114 (160)
T d1lr5a_          35 NHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH  114 (160)
T ss_dssp             HHCCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSS
T ss_pred             CCCccEEEEEEEEECCCccccceeccccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCCCcEEEEECCCC
Confidence            3466667777778899999999999999999999999999886533     34789999999999999999999999977


Q ss_pred             ceEEEEEEecc
Q 039441          270 DRLHVAKLLQP  280 (539)
Q Consensus       270 e~L~iv~l~d~  280 (539)
                      ++|+++.++.+
T Consensus       115 E~l~~l~i~~~  125 (160)
T d1lr5a_         115 EDLQVLVIISR  125 (160)
T ss_dssp             SCEEEEEEEES
T ss_pred             CCEEEEEEECC
Confidence            99999888763

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=3.3e-11  Score=103.71  Aligned_cols=79  Identities=14%  Similarity=0.203  Sum_probs=67.6

Q ss_pred             ccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCC
Q 039441          353 LQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSP  432 (539)
Q Consensus       353 L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~  432 (539)
                      +.+....++.++|.||+-..+|||++..++.||++|++.+.+-   +                        +.  ..|++
T Consensus        34 ~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~---~------------------------~~--~~l~~   84 (115)
T d1o4ta_          34 MHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN---G------------------------KD--VPIKA   84 (115)
T ss_dssp             TTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET---T------------------------EE--EEEET
T ss_pred             cCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEEc---C------------------------ee--EEeec
Confidence            3344466778999999999999999999999999999988752   1                        12  57999


Q ss_pred             CcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          433 GVVFIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       433 GDV~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      ||+++||+|.+|++.|.++++++|+++.
T Consensus        85 Gd~~~ip~g~~H~~~N~g~~~~~~l~I~  112 (115)
T d1o4ta_          85 GDVCFTDSGESHSIENTGNTDLEFLAVI  112 (115)
T ss_dssp             TEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             cEEEEECCCCeEEEEECCCCCEEEEEEE
Confidence            9999999999999999999999999864

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=1.7e-10  Score=96.53  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=68.0

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      -++.+..+.+.||+-..+|+|+.+.++.||++|++.+.+   ++                        +.  ..|++||+
T Consensus        26 ~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~---~~------------------------~~--~~l~~Gd~   76 (105)
T d1v70a_          26 ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GE------------------------EE--ALLAPGMA   76 (105)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TT------------------------EE--EEECTTCE
T ss_pred             CCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE---ee------------------------eE--EEecceEE
Confidence            358889999999999999999999999999999999875   22                        22  47999999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      ++||+|.+|.+.|.+++++.+|.+..
T Consensus        77 ~~~p~~~~H~~~n~g~~~~~~l~v~~  102 (105)
T d1v70a_          77 AFAPAGAPHGVRNESASPALLLVVTA  102 (105)
T ss_dssp             EEECTTSCEEEECCSSSCEEEEEEEE
T ss_pred             EEeCCCCEEEeEECCCCCEEEEEEEC
Confidence            99999999999999999999998653

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.14  E-value=1.7e-10  Score=98.53  Aligned_cols=75  Identities=12%  Similarity=0.231  Sum_probs=66.7

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..+.|.||.-+.+||| +++++.||++|+|.+.+-+..                          .  ..|++||++
T Consensus        25 ~~~v~~~~l~pG~~~p~H~H-~~~e~~~Vl~G~~~~~v~~~e--------------------------~--~~v~~Gd~i   75 (108)
T d2b8ma1          25 HVQINHIVLPRGEQMPKHYS-NSYVHLIIIKGEMTLTLEDQE--------------------------P--HNYKEGNIV   75 (108)
T ss_dssp             SCEEEEEEEETTCBCCCEEC-SSCEEEEEEESEEEEEETTSC--------------------------C--EEEETTCEE
T ss_pred             CEEEEEEEECCCCcChhhcc-cccEEEEEEeeeEEEEEeccc--------------------------E--EEeecceEe
Confidence            58899999999999999999 588999999999999874321                          1  469999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                      +||+|.+|.+.|.++++|.|+++.
T Consensus        76 ~ip~~~~H~~~n~~~e~l~~l~v~   99 (108)
T d2b8ma1          76 YVPFNVKMLIQNINSDILEFFVVK   99 (108)
T ss_dssp             EECTTCEEEEECCSSSEEEEEEEE
T ss_pred             eccCCceEEEEcCCCCcEEEEEEE
Confidence            999999999999999999999875

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.11  E-value=3.4e-10  Score=103.08  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=77.0

Q ss_pred             ceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhh
Q 039441          340 GRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEES  419 (539)
Q Consensus       340 G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~  419 (539)
                      ....++.+.....++.  |.+.+++|.||+-..||+| ++.+++||++|++.+.+-+.....                  
T Consensus        25 ~~~~~~~~~~~~g~~~--i~v~~~~l~PG~~~~~H~H-~~~e~~~Vl~G~g~~~i~~~~~~~------------------   83 (160)
T d1lr5a_          25 LSHITVAGALNHGMKE--VEVWLQTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKY------------------   83 (160)
T ss_dssp             EEEEEEECHHHHCCSS--EEEEEEEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSS------------------
T ss_pred             ceEEEeecccCCCccE--EEEEEEEECCCccccceec-cccEEEEEEeeeEEEEECCccccc------------------
Confidence            3344444444455554  8999999999999999999 679999999999999886643210                  


Q ss_pred             hcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC-CcEEEEEEeec
Q 039441          420 SRELQKISANLSPGVVFIIPPGHPIALVASPN-EKLLTVGFSLN  462 (539)
Q Consensus       420 ~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn-e~l~~v~F~~n  462 (539)
                        ..+.....|++||+|+||+|.+|.+.|+++ ++|.++++...
T Consensus        84 --~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~i~~~  125 (160)
T d1lr5a_          84 --PGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISR  125 (160)
T ss_dssp             --CCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEES
T ss_pred             --cccceEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEEEECC
Confidence              001234689999999999999999999875 78999987644

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=2.7e-10  Score=95.19  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=65.4

Q ss_pred             ceeeEEEeeeCCCeeecccc-cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLVVPHH-SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~-~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .++.+.++.+.|++..-+|+ .++++++||++|++.+.+   + -..+.|++||++++|+|++|++.|.+ +++++++.+
T Consensus        26 ~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~---~-~~~~~l~~Gd~~~~p~~~~H~~~n~g-~~~~~~l~v  100 (105)
T d1v70a_          26 ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---G-EEEALLAPGMAAFAPAGAPHGVRNES-ASPALLLVV  100 (105)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---T-TEEEEECTTCEEEECTTSCEEEECCS-SSCEEEEEE
T ss_pred             CCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE---e-eeEEEecceEEEEeCCCCEEEeEECC-CCCEEEEEE
Confidence            34667788889999998885 567899999999999876   2 24689999999999999999999998 588998888


Q ss_pred             ecc
Q 039441          278 LQP  280 (539)
Q Consensus       278 ~d~  280 (539)
                      +.|
T Consensus       101 ~~P  103 (105)
T d1v70a_         101 TAP  103 (105)
T ss_dssp             EES
T ss_pred             ECC
Confidence            765

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=1.7e-10  Score=98.90  Aligned_cols=76  Identities=20%  Similarity=0.243  Sum_probs=66.9

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .++.+.+++++|++.+-+|+|+.++++||++|++.+.+    ..+.+.|++||+++||+|++|++.|.+ +++|++|+++
T Consensus        34 ~~~~~~~~~i~pG~~~~~H~H~~~e~~~vl~G~~~~~~----~~~~~~l~~Gd~~~ip~~~~H~~~n~~-~~~~~~l~ii  108 (114)
T d1vj2a_          34 PNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK----EQGEETVEEGFYIFVEPNEIHGFRNDT-DSEVEFLCLI  108 (114)
T ss_dssp             SSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC----SSCEEEEETTEEEEECTTCCEEEECCS-SSCEEEEEEE
T ss_pred             CceEEEEEEECCCCCCCceECCCcEEEEEEEceeEEEE----eeeeeEEecCeEEEEcCCCeEEEEeCC-CCCEEEEEEE
Confidence            34667777889999999999999999999999998886    225799999999999999999999998 6889998887


Q ss_pred             c
Q 039441          279 Q  279 (539)
Q Consensus       279 d  279 (539)
                      -
T Consensus       109 p  109 (114)
T d1vj2a_         109 P  109 (114)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.03  E-value=8.6e-10  Score=103.36  Aligned_cols=83  Identities=17%  Similarity=0.318  Sum_probs=70.5

Q ss_pred             ceeEEEEEEcCCc------eecceecCC--CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEe
Q 039441          357 DAGVTYVEINQGG------MMVPHYNSK--ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISA  428 (539)
Q Consensus       357 ~isva~v~L~pGg------m~~PHwhpn--A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~  428 (539)
                      ++.+....|.||.      |...|||+.  ..|+.||++|+|.+.+-...+.                        ....
T Consensus        66 ~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~------------------------~~~~  121 (190)
T d1x82a_          66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGD------------------------AKWI  121 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCC------------------------EEEE
T ss_pred             CeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCc------------------------eEEE
Confidence            6888999999997      445699974  5699999999999999887652                        3346


Q ss_pred             eeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          429 NLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       429 ~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      .|.+||+++||+|++|.+.|+|+++|.++++...+
T Consensus       122 ~v~~Gd~v~iP~g~~H~~~N~Gde~L~~l~v~~~~  156 (190)
T d1x82a_         122 SMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD  156 (190)
T ss_dssp             EECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred             EecCCcEEEEecceeEEeEECCCCCEEEEEEECCC
Confidence            89999999999999999999999999999876543

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=9.1e-10  Score=94.45  Aligned_cols=71  Identities=21%  Similarity=0.305  Sum_probs=60.1

Q ss_pred             EEEeeeCCCeeeccccc-CCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          203 LAILEANPSTLVVPHHS-DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       203 l~il~l~P~~l~lPh~~-dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      +..++++|++-.-+|+| +.++++||++|++.+.+  .  .+.+.|++||++++|+|.+|++.|++ +++|++++|.
T Consensus        41 ~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~--~--~~~~~l~~Gd~~~ip~g~~H~~~N~g-~~~~~~l~I~  112 (115)
T d1o4ta_          41 FARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--N--GKDVPIKAGDVCFTDSGESHSIENTG-NTDLEFLAVI  112 (115)
T ss_dssp             EEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--T--TEEEEEETTEEEEECTTCEEEEECCS-SSCEEEEEEE
T ss_pred             EEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE--c--CeeEEeeccEEEEECCCCeEEEEECC-CCCEEEEEEE
Confidence            34566799999988976 56899999999998875  2  35789999999999999999999998 5789888765

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=5.4e-10  Score=95.68  Aligned_cols=76  Identities=9%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..+.|.||+...+|+|+ ..+++||++|++.+.+   ++                        +.  ..|++||++
T Consensus        35 ~~~~~~~~i~pG~~~~~H~H~-~~e~~~vl~G~~~~~~---~~------------------------~~--~~l~~Gd~~   84 (114)
T d1vj2a_          35 NFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLK---EQ------------------------GE--ETVEEGFYI   84 (114)
T ss_dssp             SEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEEC---SS------------------------CE--EEEETTEEE
T ss_pred             ceEEEEEEECCCCCCCceECC-CcEEEEEEEceeEEEE---ee------------------------ee--eEEecCeEE
Confidence            478889999999999999995 5799999999998875   21                        12  579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +||+|.+|++.|.+++++.||++..+
T Consensus        85 ~ip~~~~H~~~n~~~~~~~~l~iip~  110 (114)
T d1vj2a_          85 FVEPNEIHGFRNDTDSEVEFLCLIPK  110 (114)
T ss_dssp             EECTTCCEEEECCSSSCEEEEEEEEG
T ss_pred             EEcCCCeEEEEeCCCCCEEEEEEECC
Confidence            99999999999999999999998654

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.98  E-value=1.2e-09  Score=91.47  Aligned_cols=75  Identities=8%  Similarity=0.057  Sum_probs=60.8

Q ss_pred             ceeeEEEeeeCCCeee--cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          199 DNYRLAILEANPSTLV--VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~--lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      .++-+.+++|.|++-.  .||++.+.+++||++|++.+.+    +...+.|++||.++||+|++|++.|.+ ++.+.++.
T Consensus        20 ~~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~----~~~~~~l~~GD~~~~~~~~~H~~~n~~-~~~~~~~v   94 (99)
T d1y9qa2          20 TGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF----DEQWHELQQGEHIRFFSDQPHGYAAVT-EKAVFQNI   94 (99)
T ss_dssp             TTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE----TTEEEEECTTCEEEEECSSSEEEEESS-SCEEEEEE
T ss_pred             CCEEEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEe----cceEEEecCCCEEEECCCCeEEEEeCC-ccCEEEEE
Confidence            3455666677999854  5677899999999999999987    235999999999999999999999998 46665544


Q ss_pred             Ee
Q 039441          277 LL  278 (539)
Q Consensus       277 l~  278 (539)
                      |.
T Consensus        95 i~   96 (99)
T d1y9qa2          95 VA   96 (99)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.90  E-value=3.7e-09  Score=98.98  Aligned_cols=82  Identities=23%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             ceeeEEEeeeCCCeeec------cccc---CCCcEEEEEeceEEEEEEeCCC-ceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          199 DNYRLAILEANPSTLVV------PHHS---DAETILVLLKGKGVITLVSHER-RESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~l------Ph~~---dA~~~~yV~~G~g~i~~v~pg~-~~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      ....+.++.+.|+.+.-      .|||   +.++++||++|+|++.+-++++ ..++.+++||+++||+|++|.+.|+| 
T Consensus        65 ~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~G-  143 (190)
T d1x82a_          65 GDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIG-  143 (190)
T ss_dssp             TCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECS-
T ss_pred             CCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECC-
Confidence            35666777889997653      3654   6789999999999999988764 45789999999999999999999999 


Q ss_pred             CceEEEEEEeccC
Q 039441          269 VDRLHVAKLLQPV  281 (539)
Q Consensus       269 ~e~L~iv~l~d~~  281 (539)
                      +++|++++++.+.
T Consensus       144 de~L~~l~v~~~~  156 (190)
T d1x82a_         144 DEPFIFLAIYPAD  156 (190)
T ss_dssp             SSCEEEEEEEETT
T ss_pred             CCCEEEEEEECCC
Confidence            6899999988643

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=98.89  E-value=7.4e-09  Score=91.88  Aligned_cols=78  Identities=27%  Similarity=0.354  Sum_probs=68.0

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..+++.||+-..+|+||. .+++||++|++.+++-...                          .  ..|++||++
T Consensus        34 ~~~~~~vtf~PG~~~~~H~H~~-~q~~~Vl~G~~~~~~~g~~--------------------------~--~~~~~Gd~v   84 (134)
T d2f4pa1          34 NTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERGKP--------------------------A--RILKKGDVV   84 (134)
T ss_dssp             SCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETTSC--------------------------C--EEEETTCEE
T ss_pred             eeEEEEEEECCCCcCccccCCC-CEEEEEEeCEEEEEECCcc--------------------------e--EEEcCCCeE
Confidence            5899999999999999999964 6999999999998774321                          1  369999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +||+|.+||.-|++++++.+|++..+.
T Consensus        85 ~ippg~~H~~~a~~~~~~~~lai~~~~  111 (134)
T d2f4pa1          85 EIPPNVVHWHGAAPDEELVHIGISTQV  111 (134)
T ss_dssp             EECTTCCEEEEEBTTBCEEEEEEECCG
T ss_pred             EECCCCceECccCCCCcEEEEEEEecC
Confidence            999999999999999999999986554

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.88  E-value=5.4e-09  Score=87.34  Aligned_cols=80  Identities=13%  Similarity=0.092  Sum_probs=65.0

Q ss_pred             cccccccceeEEEEEEcCCcee--cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEE
Q 039441          350 YQQLQEIDAGVTYVEINQGGMM--VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKIS  427 (539)
Q Consensus       350 fP~L~~l~isva~v~L~pGgm~--~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~  427 (539)
                      ||.....++.+..++|.||+-.  .||+| .+.+++||++|++.+.+   ++                        +  .
T Consensus        14 ~p~~~~~~~e~~~~~l~pg~~~~~~~H~h-~~~E~~~Vl~G~~~~~~---~~------------------------~--~   63 (99)
T d1y9qa2          14 FPYAADTGLEIFEITLLDHHQQMSSPHAL-GVIEYIHVLEGIMKVFF---DE------------------------Q--W   63 (99)
T ss_dssp             EEEETTTTEEEEEEEECTTCEEEECCCST-TCEEEEEEEESCEEEEE---TT------------------------E--E
T ss_pred             ecCCCcCCEEEEEEEEeCCcEeccccccC-CcEEEEEEEcCceEEEe---cc------------------------e--E
Confidence            4555566799999999999866  55665 78999999999999976   21                        2  3


Q ss_pred             eeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEE
Q 039441          428 ANLSPGVVFIIPPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       428 ~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F  459 (539)
                      ..|++||.+.||++.+|.+.|.+++++.++.|
T Consensus        64 ~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~vi   95 (99)
T d1y9qa2          64 HELQQGEHIRFFSDQPHGYAAVTEKAVFQNIV   95 (99)
T ss_dssp             EEECTTCEEEEECSSSEEEEESSSCEEEEEEE
T ss_pred             EEecCCCEEEECCCCeEEEEeCCccCEEEEEE
Confidence            57999999999999999999999888755444

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.88  E-value=3.8e-09  Score=102.44  Aligned_cols=80  Identities=20%  Similarity=0.168  Sum_probs=67.2

Q ss_pred             cceeeEEEeeeCCCeee-cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          198 IDNYRLAILEANPSTLV-VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       198 v~~~Rl~il~l~P~~l~-lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      ..++.+.+++++|++.. .+|++..++++||++|+|.+.+    +.+.+.|++||+++||||++||++|+|.++.++++.
T Consensus       165 ~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~----~~~~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l~  240 (250)
T d1sefa_         165 DFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL----DNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVY  240 (250)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEECSSSCEEEEE
T ss_pred             cccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE----CCEEEEecCCCEEEECCCCCEEeEcCCCCCcEEEEE
Confidence            45678888999999987 4578999999999999999887    347899999999999999999999999767776654


Q ss_pred             EeccCC
Q 039441          277 LLQPVN  282 (539)
Q Consensus       277 l~d~~n  282 (539)
                       +.++|
T Consensus       241 -~k~~~  245 (250)
T d1sefa_         241 -SKDAN  245 (250)
T ss_dssp             -EEECS
T ss_pred             -EecCC
Confidence             44444

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=1.4e-08  Score=90.04  Aligned_cols=80  Identities=18%  Similarity=0.264  Sum_probs=67.4

Q ss_pred             CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      +..++.+..+++.|++-.-+|+|+.++++||++|++.+.+   ++.....+++||+++||+|+.||.-|.+ ++.+..|+
T Consensus        31 ~~~~~~~~~vtf~PG~~~~~H~H~~~q~~~Vl~G~~~~~~---~g~~~~~~~~Gd~v~ippg~~H~~~a~~-~~~~~~la  106 (134)
T d2f4pa1          31 GVFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKPARILKKGDVVEIPPNVVHWHGAAP-DEELVHIG  106 (134)
T ss_dssp             CSSSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSCCEEEETTCEEEECTTCCEEEEEBT-TBCEEEEE
T ss_pred             CCceeEEEEEEECCCCcCccccCCCCEEEEEEeCEEEEEE---CCcceEEEcCCCeEEECCCCceECccCC-CCcEEEEE
Confidence            3455667777779999999999999999999999998766   3345689999999999999999999998 57888888


Q ss_pred             Eecc
Q 039441          277 LLQP  280 (539)
Q Consensus       277 l~d~  280 (539)
                      |...
T Consensus       107 i~~~  110 (134)
T d2f4pa1         107 ISTQ  110 (134)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            7653

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.82  E-value=7.2e-09  Score=100.29  Aligned_cols=77  Identities=14%  Similarity=0.190  Sum_probs=66.4

Q ss_pred             ceeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      ..+.+.+++++|++-.-+| |+..++++||++|+|.+.+    +.+.+.|++||++++|+|++||++|+| ++++++|++
T Consensus       163 ~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i----~~~~~~v~~GD~i~~~~~~~H~~~n~g-~~~~~~l~~  237 (245)
T d1sfna_         163 FDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL----EENYYPVTAGDIIWMGAHCPQWYGALG-RNWSKYLLY  237 (245)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE----TTEEEEEETTCEEEECTTCCEEEEEES-SSCEEEEEE
T ss_pred             cceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE----CCEEEEecCCCEEEECCCCCEeeEeCC-CCCEEEEEE
Confidence            4577888999999987655 5899999999999999887    346899999999999999999999999 688987765


Q ss_pred             ecc
Q 039441          278 LQP  280 (539)
Q Consensus       278 ~d~  280 (539)
                      -|.
T Consensus       238 k~~  240 (245)
T d1sfna_         238 KDM  240 (245)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            553

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=6.6e-09  Score=100.77  Aligned_cols=81  Identities=17%  Similarity=0.064  Sum_probs=63.2

Q ss_pred             CcceeeEEEeeeCCCeee-cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEE
Q 039441          197 GIDNYRLAILEANPSTLV-VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA  275 (539)
Q Consensus       197 gv~~~Rl~il~l~P~~l~-lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv  275 (539)
                      ...++.+.+++++|++-. .+|++..++++||++|+|.+.+    +-+.+.|++||+|+||||++||++|+|.++.++++
T Consensus       167 ~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~~~i----~~~~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~  242 (253)
T d1rc6a_         167 LGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL----DNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYI  242 (253)
T ss_dssp             TTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES----SSCEEEEETTCEEEECSSEEEEEEEC----CEEEE
T ss_pred             ccccEEEEEEEECCCceEeEEEeCCceEEEEEeCCEEEEEE----CCEEEEecCCCEEEECCCCCEeeeeCCCCCcEEEE
Confidence            345678888999999865 5788999999999999999877    33689999999999999999999999965655555


Q ss_pred             EEeccCC
Q 039441          276 KLLQPVN  282 (539)
Q Consensus       276 ~l~d~~n  282 (539)
                      +.- ++|
T Consensus       243 ~~~-~~~  248 (253)
T d1rc6a_         243 YSK-DCN  248 (253)
T ss_dssp             EEE-ECS
T ss_pred             EEE-CCC
Confidence            444 444

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.1e-08  Score=101.73  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +|.++...|.||+...||+| ++.++.||++|+|.+++++.                          ++  ..+.+||++
T Consensus        53 ~l~~~~~~l~PG~~~~~H~H-~~~e~~~vl~G~g~~t~~~~--------------------------~~--~~~~~Gd~~  103 (308)
T d2d40a1          53 TLYAGLQLIMPGEVAPSHRH-NQSALRFIVEGKGAFTAVDG--------------------------ER--TPMNEGDFI  103 (308)
T ss_dssp             SCEEEEEEECTTCEEEEEEE-SSCEEEEEEECSSCEEEETT--------------------------EE--EECCTTCEE
T ss_pred             cceeeeEEECCCCccccccC-chhheEEEEEeeEEEEEecC--------------------------EE--EEecCCCEE
Confidence            58899999999999999999 67899999999999988875                          23  469999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      ++|+|.+|...|.|++++.|+.+.+
T Consensus       104 ~~P~~~~H~~~n~g~e~~~~l~~~d  128 (308)
T d2d40a1         104 LTPQWRWHDHGNPGDEPVIWLDGLD  128 (308)
T ss_dssp             EECTTSCEEEECCSSSCEEEEEEEC
T ss_pred             EeCCCceEEeEECCCCCEEEEEEec
Confidence            9999999999999999999998763

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.74  E-value=8.7e-09  Score=101.50  Aligned_cols=78  Identities=21%  Similarity=0.252  Sum_probs=67.7

Q ss_pred             ceeeEEEeeeCCCeee-cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441          199 DNYRLAILEANPSTLV-VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL  277 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~-lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l  277 (539)
                      .++.+.+++++|++-. .+|+|..++++||++|+|++.+    +.+.+.|++||+++||+|++||++|+| +++|++|++
T Consensus       187 ~d~~~~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~~~~~----~~~~~~v~~GD~i~~~~~~ph~~~n~g-~~p~~yl~~  261 (273)
T d1sq4a_         187 HDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL----NQDWVEVEAGDFMWLRAFCPQACYSGG-PGRFRYLLY  261 (273)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE----TTEEEEEETTCEEEEEESCCEEEECCS-SSCEEEEEE
T ss_pred             cceEEEEEEEccCCccccccccccceEEEEEccEEEEEE----CCEEEEecCCCEEEECCCCCEEeEeCC-CCCEEEEEE
Confidence            5678889999999755 5788889999999999999987    346899999999999999999999999 688998877


Q ss_pred             eccCC
Q 039441          278 LQPVN  282 (539)
Q Consensus       278 ~d~~n  282 (539)
                      -| +|
T Consensus       262 kd-~n  265 (273)
T d1sq4a_         262 KD-VN  265 (273)
T ss_dssp             EE-CS
T ss_pred             EE-cC
Confidence            65 44

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.73  E-value=2.2e-08  Score=85.23  Aligned_cols=65  Identities=20%  Similarity=0.435  Sum_probs=57.5

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      +..++++.+.|+.-.-+|+++.++++||++|++.+.+   + .+.+.|++||+++||+|++|++.|.++
T Consensus        36 ~~~i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~---~-~~~~~l~~Gd~~~ip~~~~H~~~a~~~  100 (112)
T d1yhfa1          36 DLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---D-QETYRVAEGQTIVMPAGIPHALYAVEA  100 (112)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---T-TEEEEEETTCEEEECTTSCEEEEESSC
T ss_pred             CcEEEEEEECCCCCcceEECCCCEEEEEEeCEEEEEE---c-cEEEEecCCEEEEcCCCCeEEeEECCC
Confidence            4567778889999999998899999999999999887   2 367999999999999999999999863

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.70  E-value=1.5e-08  Score=88.51  Aligned_cols=75  Identities=16%  Similarity=0.299  Sum_probs=63.1

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .++.+.++++.|+++  |+|++.++++||++|++.|++  .  -.++.|++||+++||+|+.|++.|.+   ++++++++
T Consensus        52 ~~~~~~~~~~~~g~~--~~~~~~~E~~~vl~G~~~~~~--~--g~~~~l~~Gd~~~~p~g~~h~~~~~~---~~~~~~v~  122 (128)
T d2pyta1          52 SSMAAGFMQWDNAFF--PWTLNYDEIDMVLEGELHVRH--E--GETMIAKAGDVMFIPKGSSIEFGTPT---SVRFLYVA  122 (128)
T ss_dssp             CSSEEEEEEEEEEEE--EEECSSEEEEEEEEEEEEEEE--T--TEEEEEETTCEEEECTTCEEEEEEEE---EEEEEEEE
T ss_pred             CceEEEEEEECCCcc--ceeCCccEEEEEEEeEEEEEE--C--CEEEEecCCCEEEECCCCEEEEEeCC---CEEEEEEE
Confidence            356677888899875  788999999999999999985  2  36899999999999999999999975   47778877


Q ss_pred             ccCC
Q 039441          279 QPVN  282 (539)
Q Consensus       279 d~~n  282 (539)
                      .|.|
T Consensus       123 ~Pa~  126 (128)
T d2pyta1         123 WPAN  126 (128)
T ss_dssp             ESTT
T ss_pred             CCCC
Confidence            7653

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.69  E-value=1e-08  Score=103.85  Aligned_cols=82  Identities=11%  Similarity=0.056  Sum_probs=67.9

Q ss_pred             ceeEEEEEEcCCcee--cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          357 DAGVTYVEINQGGMM--VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       357 ~isva~v~L~pGgm~--~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      .+++..+++.||+..  .||||.+++|++||++|++++.+....+.                        .....|.+||
T Consensus        45 ~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~------------------------~~~~~l~~GD  100 (348)
T d1juha_          45 AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNET------------------------QQTRVLSSGD  100 (348)
T ss_dssp             SCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSC------------------------CEEEEEETTC
T ss_pred             eEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCc------------------------eEEEEeCCCC
Confidence            478999999999864  78999999999999999999999886541                        2236799999


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          435 VFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                      +++||+|.+|.+.|.++ +..+|.+.+..
T Consensus       101 ~~~~P~g~~H~~~n~~~-~~~~l~v~~pg  128 (348)
T d1juha_         101 YGSVPRNVTHTFQIQDP-DTEMTGVIVPG  128 (348)
T ss_dssp             EEEECTTEEEEEEECST-TEEEEEEEESS
T ss_pred             EEEECCCCeEeeEeCCC-CcEEEEEECCC
Confidence            99999999999999865 56777655544

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.66  E-value=6.5e-08  Score=84.01  Aligned_cols=75  Identities=8%  Similarity=0.064  Sum_probs=60.9

Q ss_pred             EEeeeCCCeeec---ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          204 AILEANPSTLVV---PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       204 ~il~l~P~~l~l---Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      .++++.|++-..   .++|...+++||++|+..+.+-+....+++.|++||.++||++++|.+.|..+++++.|+.|.
T Consensus        44 ~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~l~Vt  121 (122)
T d2bnma2          44 LVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVN  121 (122)
T ss_dssp             EEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTTSCCEEEEEEE
T ss_pred             EEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEEEcCCCCccEEEEEEE
Confidence            344558887543   335788999999999999998777777899999999999999999999997546777777653

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.64  E-value=6.1e-08  Score=98.42  Aligned_cols=76  Identities=12%  Similarity=0.069  Sum_probs=68.6

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .|.+++..|.||....||+| ++.+|.||++|+|.+++|+..                          +  ..+.+||+|
T Consensus        86 ~l~~~~~~l~PGe~~~~H~H-~~~~~~~vi~G~g~~t~v~g~--------------------------~--~~~~~GD~~  136 (351)
T d2phda1          86 TMWAGIQYLGPRETAPEHRH-SQNAFRFVVEGEGVWTVVNGD--------------------------P--VRMSRGDLL  136 (351)
T ss_dssp             SCEEEEEEECTTCEEEEEEE-SSCEEEEEEECEEEEEEETTE--------------------------E--EEEETTCEE
T ss_pred             hhhhheEEECCCCcCCcccc-ccceeEEEEECCcEEEEECCE--------------------------E--EEEeCCCEE
Confidence            68889999999999999999 799999999999999988752                          3  479999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      ++|+|.+|...|.+++++.|+.+.+
T Consensus       137 ~~P~~~~H~~~n~~d~~~~~l~~~d  161 (351)
T d2phda1         137 LTPGWCFHGHMNDTDQPMAWIDGLD  161 (351)
T ss_dssp             EECTTCCEEEEECSSSCEEEEEEEC
T ss_pred             EeCCCceEEEEEcCCCCEEEEEeec
Confidence            9999999999999999999997653

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.63  E-value=8.4e-08  Score=81.48  Aligned_cols=76  Identities=18%  Similarity=0.350  Sum_probs=62.3

Q ss_pred             ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      .-++.+..+.|.||.-..+|+|+ ..+++||++|++.+.+   ++                        +.  ..|++||
T Consensus        34 ~~~~~i~~~~~~~G~~~~~H~h~-~~~~~~vl~G~~~~~~---~~------------------------~~--~~l~~Gd   83 (112)
T d1yhfa1          34 RQDLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQ------------------------ET--YRVAEGQ   83 (112)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TT------------------------EE--EEEETTC
T ss_pred             CCCcEEEEEEECCCCCcceEECC-CCEEEEEEeCEEEEEE---cc------------------------EE--EEecCCE
Confidence            34678889999999999999996 5899999999999876   22                        12  5799999


Q ss_pred             EEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          435 VFIIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       435 V~vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +++||+|.+|.+.|.++  +.++++.+.
T Consensus        84 ~~~ip~~~~H~~~a~~~--~~~l~~vi~  109 (112)
T d1yhfa1          84 TIVMPAGIPHALYAVEA--FQMLLVVVK  109 (112)
T ss_dssp             EEEECTTSCEEEEESSC--EEEEEEEEC
T ss_pred             EEEcCCCCeEEeEECCC--cEEEEEEEC
Confidence            99999999999999754  666654443

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.39  E-value=7.5e-07  Score=88.75  Aligned_cols=76  Identities=16%  Similarity=0.273  Sum_probs=63.8

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+++..+++.||+...||+|+.+.++.||++|++.+.+-   +                        +.  ..|.+||++
T Consensus        41 ~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~---~------------------------~~--~~l~~Gd~~   91 (330)
T d1y3ta1          41 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLD---G------------------------ER--YLLISGDYA   91 (330)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEET---T------------------------EE--EEECTTCEE
T ss_pred             cEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEEC---C------------------------EE--EEEcCCCEE
Confidence            488999999999999999999999999999999998752   2                        22  579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~n  462 (539)
                      +||+|.+|.+.|.++ +..+|.+.+.
T Consensus        92 ~~p~~~~H~~~n~~~-~~~~l~~~~p  116 (330)
T d1y3ta1          92 NIPAGTPHSYRMQSH-RTRLVSYTMK  116 (330)
T ss_dssp             EECTTCCEEEEECST-TEEEEEEEET
T ss_pred             EeCCCCeEEEEEcCC-CeEEEEEECC
Confidence            999999999999977 4555554433

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.37  E-value=6e-07  Score=91.18  Aligned_cols=74  Identities=19%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK  276 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~  276 (539)
                      ..+...+..|.|+.-..||++.+.+++||++|+|.+++    +..++.+++||+++||+++.|++.|+++.+...++.
T Consensus       254 ~ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i----~g~~~~~~~GDv~~vP~~~~h~~~N~s~~e~~~Lf~  327 (355)
T d3bu7a1         254 LTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV----GGKRFDWSEHDIFCVPAWTWHEHCNTQERDDACLFS  327 (355)
T ss_dssp             SSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE----TTEEEEECTTCEEEECTTCCEEEEECCSSCCEEEEE
T ss_pred             ceeeEEEEEECCCCccCCcCccCcEEEEEEECcEEEEE----CCEEEEeeCCCEEEeCCCCcEEeecCCCCCcEEEEE
Confidence            34556667779999999999999999999999998887    346899999999999999999999998544444333

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.32  E-value=1.2e-06  Score=76.12  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=58.0

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+++....+.||++   |||....|++||++|++.+.+   ++                        +.  ..|++||++
T Consensus        53 ~~~~~~~~~~~g~~---~~~~~~~E~~~vl~G~~~~~~---~g------------------------~~--~~l~~Gd~~  100 (128)
T d2pyta1          53 SMAAGFMQWDNAFF---PWTLNYDEIDMVLEGELHVRH---EG------------------------ET--MIAKAGDVM  100 (128)
T ss_dssp             SSEEEEEEEEEEEE---EEECSSEEEEEEEEEEEEEEE---TT------------------------EE--EEEETTCEE
T ss_pred             ceEEEEEEECCCcc---ceeCCccEEEEEEEeEEEEEE---CC------------------------EE--EEecCCCEE
Confidence            57888899999874   788899999999999999985   22                        23  579999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEEee
Q 039441          437 IIPPGHPIALVASPNEKLLTVGFSL  461 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F~~  461 (539)
                      +||+|..|.+.|.+  ++.++.+.+
T Consensus       101 ~~p~g~~h~~~~~~--~~~~~~v~~  123 (128)
T d2pyta1         101 FIPKGSSIEFGTPT--SVRFLYVAW  123 (128)
T ss_dssp             EECTTCEEEEEEEE--EEEEEEEEE
T ss_pred             EECCCCEEEEEeCC--CEEEEEEEC
Confidence            99999999999974  466665543

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.32  E-value=2.2e-06  Score=74.06  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=61.7

Q ss_pred             ceeEEEEEEcCCceecceec--CCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441          357 DAGVTYVEINQGGMMVPHYN--SKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV  434 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwh--pnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD  434 (539)
                      .|-..++.|.|++-..+.++  -...+++||++|++.+.+-....                         ..+..|++||
T Consensus        40 ~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~-------------------------~~~~~l~~GD   94 (122)
T d2bnma2          40 SLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKEN-------------------------PKEALLPTGA   94 (122)
T ss_dssp             TCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTS-------------------------CEEEEECTTC
T ss_pred             ccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccC-------------------------CEEEEEccCc
Confidence            47778899999987665442  15799999999999998754321                         1235799999


Q ss_pred             EEEeCCCCeEEEEcC-CCCcEEEEEE
Q 039441          435 VFIIPPGHPIALVAS-PNEKLLTVGF  459 (539)
Q Consensus       435 V~vVPaG~~h~i~n~-gne~l~~v~F  459 (539)
                      .++||++.||.+.|. |++++.+|++
T Consensus        95 si~~~~~~pH~~~n~~g~~~a~~l~V  120 (122)
T d2bnma2          95 SMFVEEHVPHAFTAAKGTGSAKLIAV  120 (122)
T ss_dssp             EEEECTTCCEEEEESTTSCCEEEEEE
T ss_pred             EEEeCCCCCEEEEcCCCCccEEEEEE
Confidence            999999999999995 7888888875

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.30  E-value=1.6e-07  Score=86.89  Aligned_cols=67  Identities=18%  Similarity=0.318  Sum_probs=55.7

Q ss_pred             eeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          212 TLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       212 ~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      .|+-.|.|+.+++.||++|+|++.+-..+......+++||+|.||+|+.||+-+.. +..+.+|.+|.
T Consensus        91 kF~~EH~H~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~-~~~~~aiRlF~  157 (179)
T d1zrra1          91 KFLNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGS-EPNFTAIRIFD  157 (179)
T ss_dssp             HHHSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSS-CSSCEEEEEEC
T ss_pred             HhcccccCCCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCC-CCCEEEEEEec
Confidence            35667878889999999999999987765545678999999999999999997665 56677777775

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.14  E-value=6.8e-07  Score=82.54  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=57.7

Q ss_pred             eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441          370 MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS  449 (539)
Q Consensus       370 m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~  449 (539)
                      +...|.|+. .+|.||++|+|++.|-..+                         +.+...+++||+++||+|..||..++
T Consensus        92 F~~EH~H~~-dEvr~vv~G~g~f~v~~~d-------------------------~~~~v~~~~GDli~vPag~~H~F~~~  145 (179)
T d1zrra1          92 FLNEHTHGE-DEVRFFVEGAGLFCLHIGD-------------------------EVFQVLCEKNDLISVPAHTPHWFDMG  145 (179)
T ss_dssp             HHSCBEESS-CEEEEEEESCCCCCEECSS-------------------------CEEEEECCCSCEEEECTTCCBCCCCS
T ss_pred             hcccccCCC-ceEEEEEeCeEEEEEEcCC-------------------------eEEEEEEcCCCEEEeCCCCeEccccC
Confidence            457899964 8999999999999987643                         35667899999999999999999888


Q ss_pred             CCCcEEEEEEeecC
Q 039441          450 PNEKLLTVGFSLNA  463 (539)
Q Consensus       450 gne~l~~v~F~~na  463 (539)
                      .+..+..|.|+.++
T Consensus       146 ~~~~~~aiRlF~~~  159 (179)
T d1zrra1         146 SEPNFTAIRIFDNP  159 (179)
T ss_dssp             SCSSCEEEEEECCG
T ss_pred             CCCCEEEEEEecCC
Confidence            78889999877665

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1.8e-05  Score=72.81  Aligned_cols=69  Identities=14%  Similarity=0.275  Sum_probs=58.7

Q ss_pred             eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441          370 MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS  449 (539)
Q Consensus       370 m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~  449 (539)
                      +..-|.|+ ..+|.||++|+|.+.|-...+                        +.+.-.+.+||+++||+|..||...+
T Consensus        84 F~~EH~H~-~~Evr~vl~G~G~f~v~~~~~------------------------~~iri~~~~GDli~iPag~~HwFtl~  138 (179)
T d1vr3a1          84 FFEEHLHL-DEEIRYILEGSGYFDVRDKED------------------------KWIRISMEKGDMITLPAGIYHRFTLD  138 (179)
T ss_dssp             HHSCEECS-SCEEEEEEEEEEEEEEECTTS------------------------CEEEEEEETTEEEEECTTCCEEEEEC
T ss_pred             HhhceeCC-CcEEEEEEeCcEEEEEECCCC------------------------cEEEEEEeCCCEEEeCCCccEeccCC
Confidence            45789995 589999999999999987654                        46777899999999999999999988


Q ss_pred             CCCcEEEEEEeecC
Q 039441          450 PNEKLLTVGFSLNA  463 (539)
Q Consensus       450 gne~l~~v~F~~na  463 (539)
                      .+..+..+-++++.
T Consensus       139 ~~~~v~aiRlF~~~  152 (179)
T d1vr3a1         139 EKNYVKAMRLFVGE  152 (179)
T ss_dssp             TTCCEEEEEEESSS
T ss_pred             CCCCEEEEEEECCC
Confidence            77778888766554

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=2.2e-05  Score=72.12  Aligned_cols=66  Identities=24%  Similarity=0.385  Sum_probs=54.4

Q ss_pred             ecccccCCCcEEEEEeceEEEEEEeCCCce-eeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          214 VVPHHSDAETILVLLKGKGVITLVSHERRE-SFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       214 ~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~-~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      +--|.|..++|.||+.|+|.+.+-..+.+. ...+++||+|.||||+.||+.-+. +..++++-+|..
T Consensus        85 ~~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~-~~~v~aiRlF~~  151 (179)
T d1vr3a1          85 FEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDE-KNYVKAMRLFVG  151 (179)
T ss_dssp             HSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECT-TCCEEEEEEESS
T ss_pred             hhceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCC-CCCEEEEEEECC
Confidence            347777889999999999999997765554 468899999999999999998665 577877777763

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.62  E-value=0.00037  Score=60.64  Aligned_cols=100  Identities=11%  Similarity=0.076  Sum_probs=69.6

Q ss_pred             cccCCCceEEEeCCcccccccccceeEEEE-EEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhH
Q 039441          334 IYNNNFGRFFEATPKDYQQLQEIDAGVTYV-EINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQE  412 (539)
Q Consensus       334 ~~sn~~G~i~~~~~~~fP~L~~l~isva~v-~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~  412 (539)
                      .+...-|.+..+...+.-.+.-  -.+..+ ...+|.++..|+|...+.+.+|+.|...+.+.+....            
T Consensus         9 ~~~D~RG~l~~i~~~~~~~f~~--kr~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~------------   74 (135)
T d2pa7a1           9 KIIDSRGSLVAIEENKNIPFSI--KRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNII------------   74 (135)
T ss_dssp             EEEETTEEEEEEETTTTSSSCC--CEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCE------------
T ss_pred             ceECCCCCEEEEEccccccccc--ceEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEecccc------------
Confidence            3444468877666544322221  134433 4678999999999999999999999999988876531            


Q ss_pred             HHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441          413 EEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       413 ~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~  460 (539)
                                  ....-.+.+++++||+|++|.+.+.+++ ..++.+.
T Consensus        75 ------------~~~~l~~~~~~l~IPpg~~h~~~~l~~~-s~ll~l~  109 (135)
T d2pa7a1          75 ------------QEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVLA  109 (135)
T ss_dssp             ------------EEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEEE
T ss_pred             ------------ceeecccCCceeeeCCCEeeeEEecCCC-cEEEEEc
Confidence                        1212237889999999999999998654 4454444

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.0034  Score=58.73  Aligned_cols=175  Identities=14%  Similarity=0.143  Sum_probs=108.7

Q ss_pred             eeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCC-ceeeecCCCcEEEeCCC--CeEEEEecCCCceEEEEEEeccCC
Q 039441          207 EANPSTLVVPH-HSDAETILVLLKGKGVITLVSHER-RESFNMEHGDVISVPAG--TTYYLSNQDNVDRLHVAKLLQPVN  282 (539)
Q Consensus       207 ~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~-~~~~~v~~GDV~~iPaG--~~h~i~N~g~~e~L~iv~l~d~~n  282 (539)
                      ++.|++-+-|| |.+-+-|.||++|.    +.+.+. ...-.|++|||-.+-||  +.|.=.|..+++.++++-|.-..+
T Consensus        47 ~~~pg~gf~~HpH~g~eivT~vl~G~----~~H~DS~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQiWi~P~  122 (231)
T d1tq5a1          47 VIEAGQGFGTHPHKDMEILTYVLEGT----VEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIMPE  122 (231)
T ss_dssp             EECTTCEEEEEEECSCEEEEEEEESE----EEEEESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEECCS
T ss_pred             eecCCCCCCCCCcCCeeEEEEEEeEE----EEECCCCCCcEEECCCcEEEEecCCcEEEEeeccccCCCeEEEEEEeCCh
Confidence            34899877777 99999999999994    223332 24567999999998886  467777876566676655543111


Q ss_pred             CCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCce--EEEeCCcccccccccceeE
Q 039441          283 TPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGR--FFEATPKDYQQLQEIDAGV  360 (539)
Q Consensus       283 ~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~--i~~~~~~~fP~L~~l~isv  360 (539)
                      ..                      .+.|              .|....-.    ...++  +...+..+-|.--..++.+
T Consensus       123 ~~----------------------~~~p--------------~y~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~l  162 (231)
T d1tq5a1         123 EN----------------------GITP--------------RYEQRRFD----AVQGKQLVLSPDARDGSLKVHQDMEL  162 (231)
T ss_dssp             SC----------------------SCCC--------------EEEEECCC----CCSSEEEEEESSCGGGCEECSSSCEE
T ss_pred             hH----------------------CCCc--------------ccccceec----cccceEEecccccccCCcccccccEE
Confidence            00                      0011              11110000    00122  2222333334444557889


Q ss_pred             EEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCC
Q 039441          361 TYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPP  440 (539)
Q Consensus       361 a~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPa  440 (539)
                      ..+.|.+|+-......+.-.-++||++|++.+     ++                            ..|.+||.++|-.
T Consensus       163 ~~~~l~~g~~~~~~l~~~~~~~lyvi~G~l~i-----~g----------------------------~~l~~gd~~~l~~  209 (231)
T d1tq5a1         163 YRWALLKDEQSVHQIAAERRVWIQVVKGNVTI-----NG----------------------------VKASTSDGLAIWD  209 (231)
T ss_dssp             EEEEECTTCEEEECCCTTCEEEEEEEESEEEE-----TT----------------------------EEEETTCEEEEES
T ss_pred             EEEEecCCceEEEcccCCccEEEEEEeeEEEE-----CC----------------------------EEccCCCeEEECC
Confidence            99999999887655544556789999999876     22                            2478999988877


Q ss_pred             CCeEEEEcCCCCcEEEEEEe
Q 039441          441 GHPIALVASPNEKLLTVGFS  460 (539)
Q Consensus       441 G~~h~i~n~gne~l~~v~F~  460 (539)
                      +-...+.+..  +..+|.|.
T Consensus       210 ~~~l~i~A~~--~a~~LL~~  227 (231)
T d1tq5a1         210 EQAISIHADS--DSEVLLFD  227 (231)
T ss_dssp             CSCEEEEESS--SEEEEEEE
T ss_pred             CCeEEEEECC--CCEEEEEE
Confidence            7777776653  45665543

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.0038  Score=60.25  Aligned_cols=233  Identities=13%  Similarity=0.086  Sum_probs=137.5

Q ss_pred             cceeEecCCceEEEeeccCcccccccCcceeeE-EEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCC-Cceeeec
Q 039441          171 FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRL-AILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHE-RRESFNM  247 (539)
Q Consensus       171 f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl-~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg-~~~~~~v  247 (539)
                      |..+-.+|++-+++.+.+...  .++.+.-+.+ --+.+.|.+-+-|| |.+-.-|.||++|..   +.+.+ .-....|
T Consensus         9 ~~~~~~~~g~G~~v~R~~~~~--~~~~~~Pf~~~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~---~~H~Ds~G~~~~i   83 (288)
T d1j1la_           9 VLSREQSEGVGARVRRSIGRP--ELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGS---MAHEDFCGHTGKM   83 (288)
T ss_dssp             EECCEEEETBTEEEEECTTST--TCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSC---EEEEETTSCEEEE
T ss_pred             EcCccccccCCEEEEEeCCCC--CccccCceEEeEcCcCCCCCCCCCCCcCCeEEEEEEEeCCe---EEEecCCCCeeEe
Confidence            344555666445555555432  2222211111 00222554434456 999999999999853   22322 2346689


Q ss_pred             CCCcEEEeCCCC--eEEEEecCCCceEEEEEEeccCCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcc
Q 039441          248 EHGDVISVPAGT--TYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAP  325 (539)
Q Consensus       248 ~~GDV~~iPaG~--~h~i~N~g~~e~L~iv~l~d~~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~  325 (539)
                      ++|||-.+-||+  .|.=.|.. .+.++++-|.-                   ..+.. .+...|             ..
T Consensus        84 ~~G~vq~mtAG~Gi~HsE~~~~-~~~~~~lQiWi-------------------nlp~~-~k~~~P-------------~y  129 (288)
T d1j1la_          84 NPGDLQWMTAGRGILHAEMPCS-EEPAHGLQLWV-------------------NLRSS-EKMVEP-------------QY  129 (288)
T ss_dssp             CTTCEEEEECTTCEEEEEEECS-SSCEEEEEEEE-------------------ECCGG-GTTSCC-------------EE
T ss_pred             cCCCEEEEecccceEecccccc-cccceeeEEEe-------------------cCChh-hccccc-------------cc
Confidence            999999988864  56666765 45666544332                   22211 111111             11


Q ss_pred             eecC-CCCCcccCCCceEEEeCC----cccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCC
Q 039441          326 FNLL-SRKPIYNNNFGRFFEATP----KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSS  400 (539)
Q Consensus       326 fnl~-~~~p~~sn~~G~i~~~~~----~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs  400 (539)
                      ..+. +.-|.+......+..+..    ..-|+....++.+..+.|++|+.......+.-..++||++|.+.+.-..    
T Consensus       130 ~~~~~~diP~~~~~~~~~~vi~G~~~g~~~pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g~~----  205 (288)
T d1j1la_         130 QELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDD----  205 (288)
T ss_dssp             EEECGGGSCCCEETTEEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESCTT----
T ss_pred             cccccccCcccccccceEEEEeccccccccccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecCcc----
Confidence            1221 223445544445444332    2236666678999999999999987766666778999999999873111    


Q ss_pred             ccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCcccccc
Q 039441          401 RWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLA  472 (539)
Q Consensus       401 ~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLA  472 (539)
                                               ....+..++++++-.|-...+.++++++..+|.|.=-+ -+.+....
T Consensus       206 -------------------------~~~~l~~~~~~~l~~gd~~~i~~~~~~~a~~LLl~G~P-i~EPv~~~  251 (288)
T d1j1la_         206 -------------------------AQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEP-LREPVIQH  251 (288)
T ss_dssp             -------------------------SCEEECTTEEEEECSCSEEEEECCSSSCEEEEEEEECC-CCSCCEEE
T ss_pred             -------------------------cceeecCceEEEEcCCCeEEEEeCCCCCCEEEEEECCc-CCCCEEee
Confidence                                     12358899999999999888888877888888765333 34444333

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=97.50  E-value=0.0011  Score=68.41  Aligned_cols=67  Identities=22%  Similarity=0.359  Sum_probs=47.0

Q ss_pred             eeEEEEEEcCCceecc-eecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          358 AGVTYVEINQGGMMVP-HYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       358 isva~v~L~pGgm~~P-HwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .++.+++|.++.-... -...+...|++|++|++.+..-....                          .+..|++|++|
T Consensus       357 F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~~~~~~--------------------------~~~~l~~G~~~  410 (440)
T d1pmia_         357 FSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDS--------------------------TKQKIDTGYVF  410 (440)
T ss_dssp             CEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEETTCGG--------------------------GCEEEETTCEE
T ss_pred             eEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEecCCCc--------------------------cEEEeCCceEE
Confidence            5677788876542211 12235789999999999886533321                          12579999999


Q ss_pred             EeCCCCeEEEEcCC
Q 039441          437 IIPPGHPIALVASP  450 (539)
Q Consensus       437 vVPaG~~h~i~n~g  450 (539)
                      +||+|....+.+.+
T Consensus       411 fIpa~~~~~i~~~~  424 (440)
T d1pmia_         411 FVAPGSSIELTADS  424 (440)
T ss_dssp             EECTTCCEEEEECS
T ss_pred             EEcCCceEEEEeec
Confidence            99999998887764

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.40  E-value=0.0011  Score=57.54  Aligned_cols=105  Identities=11%  Similarity=0.094  Sum_probs=74.6

Q ss_pred             eeEecCCceEEEeeccCcccccccCcceeeEEEe-eeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeec-CC
Q 039441          173 YRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAIL-EANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNM-EH  249 (539)
Q Consensus       173 ~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il-~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v-~~  249 (539)
                      ..+..+-|.+.++...+.    +. ...-|+.++ .++|+.++=.| |.....|++|+.|+..+.+.+......+.+ ..
T Consensus         8 ~~~~D~RG~l~~i~~~~~----~~-f~~kr~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~   82 (135)
T d2pa7a1           8 KKIIDSRGSLVAIEENKN----IP-FSIKRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSP   82 (135)
T ss_dssp             CEEEETTEEEEEEETTTT----SS-SCCCEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCT
T ss_pred             CceECCCCCEEEEEcccc----cc-cccceEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccC
Confidence            345667788876544221    11 122355543 46889999888 568899999999999999988877665555 78


Q ss_pred             CcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCC
Q 039441          250 GDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTP  284 (539)
Q Consensus       250 GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~p  284 (539)
                      +++++||+|++|-+.|.+++  ..++.+.+..-+|
T Consensus        83 ~~~l~IPpg~~h~~~~l~~~--s~ll~l~~~~y~~  115 (135)
T d2pa7a1          83 AVGLYVGPAVWHEMHDFSSD--CVMMVLASDYYDE  115 (135)
T ss_dssp             TEEEEECTTCEEEEECCCTT--CEEEEEESSCCCG
T ss_pred             CceeeeCCCEeeeEEecCCC--cEEEEEcCCCCCh
Confidence            99999999999999999743  4455555544444

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=5.9e-05  Score=61.60  Aligned_cols=68  Identities=21%  Similarity=0.300  Sum_probs=52.0

Q ss_pred             cccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec
Q 039441          194 LLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       194 ~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~  266 (539)
                      .|..+...+..+-+..|+.|..  +.+.++++||++|+++|+.  .++ ....+.+||+++||+|..-.|.-.
T Consensus        11 ~l~~lGv~~~gvW~~~pg~f~~--~y~~~E~~~ileG~v~i~~--~~G-~~~~~~aGD~~~~p~G~~~~W~v~   78 (88)
T d1o5ua_          11 KLKELSVEKWPIWEKEVSEFDW--YYDTNETCYILEGKVEVTT--EDG-KKYVIEKGDLVTFPKGLRCRWKVL   78 (88)
T ss_dssp             HHHHHTGGGSCEEEECSEEEEE--ECSSCEEEEEEEEEEEEEE--TTC-CEEEEETTCEEEECTTCEEEEEEE
T ss_pred             HHHhcCCcccceEeecCcEEEE--EcCccEEEEEEEeEEEEEc--CCC-CEEEEeCCCEEEECCCCEEEEEEC
Confidence            4454444555677889998854  4688999999999999864  333 457899999999999999666654

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=97.23  E-value=0.0002  Score=63.06  Aligned_cols=101  Identities=8%  Similarity=-0.065  Sum_probs=67.8

Q ss_pred             cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441          356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV  435 (539)
Q Consensus       356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV  435 (539)
                      .+..+.++.+.||+.+.+|+| .+.+.+||++|+.....-...                           -...+.+|+-
T Consensus        41 tg~~~~l~r~~~G~~~p~H~H-~~~e~~~VL~G~l~~~~g~~~---------------------------~g~~~~~g~y   92 (144)
T d2o1qa1          41 MGSWTAIFDCPAGSSFAAHVH-VGPGEYFLTKGKMDVRGGKAA---------------------------GGDTAIAPGY   92 (144)
T ss_dssp             TTEEEEEEEECTTEEECCEEE-SSCEEEEEEEEEEEETTCGGG---------------------------TSEEEESSEE
T ss_pred             CCcEEEEEEeCCCcCcCCCcc-ccCEEEEEEEEEEEecCCCcC---------------------------CCceEeCCce
Confidence            467889999999999999999 677889999999866321110                           0124679999


Q ss_pred             EEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHH
Q 039441          436 FIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVA  489 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~A  489 (539)
                      ++.|+|.+|..... .++.+++.....+    ..||.-..|+++-+.-+-+..+
T Consensus        93 ~~~Pag~~H~~~~~-~e~~~~~~~~~Gp----~~~ld~dg~~~~~~~~~~~~~~  141 (144)
T d2o1qa1          93 GYESANARHDKTEF-PVASEFYMSFLGP----LTFVKPDGSPIAVIGWEDAQGA  141 (144)
T ss_dssp             EEECTTCEESCCEE-EEEEEEEEEEESC----EEEECTTSCEEEEECHHHHHHH
T ss_pred             eEcCCCCeEccccC-CCCEEEEEEEECC----eEEECCCCCEEEEEcHHHHHHH
Confidence            99999999975433 4555555433332    3456555566666554444333

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0013  Score=67.41  Aligned_cols=56  Identities=14%  Similarity=0.204  Sum_probs=42.8

Q ss_pred             cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       219 ~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      +|+++++||.+|+++|....    =...|++||+++||.|+.+.+.=.+ ..++.|+-++.
T Consensus       149 ADGDeLi~~~~Gsg~l~Tef----G~L~v~pGDyvVIPRG~~frv~~~~-~~r~yiiE~~g  204 (439)
T d1eyba_         149 SDGDFLIVPQKGNLLIYTEF----GKMLVQPNEICVIQRGMRFSIDVFE-ETRGYILEVYG  204 (439)
T ss_dssp             SSEEEEEEEEESCEEEEETT----EEEEECTTEEEEECTTCCEEEECSS-SEEEEEEEEES
T ss_pred             CCCCEEEEEEeCcEEEEEee----eEEEecCCcEEEecCceEEEEecCC-CceEEEEeecC
Confidence            78899999999999987522    1468999999999999988876544 44555554443

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0012  Score=57.61  Aligned_cols=59  Identities=15%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441          216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL  278 (539)
Q Consensus       216 Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~  278 (539)
                      ||-++.=.|.||++|+|.+.+    ...++.|++||++.||+|++|...-..+++.+.++.+.
T Consensus        33 p~g~~~Y~l~yv~~G~G~~~i----~~~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~   91 (161)
T d2arca_          33 PLGMKGYILNLTIRGQGVVKN----QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVY   91 (161)
T ss_dssp             TTCCSSEEEEEEEEECEEEEE----TTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEE
T ss_pred             CCCCCCEEEEEEEEeEEEEEE----CCEEEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEE
Confidence            665677789999999999975    23689999999999999999975443334566655443

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.84  E-value=0.012  Score=57.35  Aligned_cols=59  Identities=19%  Similarity=0.247  Sum_probs=40.2

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      .++.++.+....-..   ...+..|++|++|.+.+.   ..                         ..  ..|++|+.++
T Consensus       229 F~~~~~~~~~~~~~~---~~~~~~il~~~~G~~~i~---~~-------------------------~~--~~l~~G~s~~  275 (299)
T d1zx5a1         229 FGLEVVDVTGTAEIK---TGGVMNILYAAEGYFILR---GK-------------------------ET--ADLHRGYSCL  275 (299)
T ss_dssp             EEEEEEEEEEEEEEE---CCSBCEEEEEEESCEEEE---SS-------------------------SE--EEECTTCEEE
T ss_pred             eEEEEEEecCcEEec---cCCceEEEEEeccEEEEe---CC-------------------------CE--EEEcCCcEEE
Confidence            556666664332221   125679999999998752   21                         12  4699999999


Q ss_pred             eCCCCeEEEEcC
Q 039441          438 IPPGHPIALVAS  449 (539)
Q Consensus       438 VPaG~~h~i~n~  449 (539)
                      ||++...+.+.+
T Consensus       276 iPA~~~~~~i~g  287 (299)
T d1zx5a1         276 VPASTDSFTVES  287 (299)
T ss_dssp             ECTTCCEEEEEE
T ss_pred             EecCCccEEEEc
Confidence            999998877764

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.80  E-value=0.009  Score=58.43  Aligned_cols=59  Identities=25%  Similarity=0.343  Sum_probs=41.1

Q ss_pred             eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441          358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI  437 (539)
Q Consensus       358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v  437 (539)
                      .++.++++. |.+..+  ...+..|++|++|++.+..  .+                         ..  ..|++||.|+
T Consensus       247 F~~~~~~~~-~~~~~~--~~~~~~il~vi~G~~~i~~--~~-------------------------~~--~~l~~G~~~~  294 (315)
T d1qwra_         247 FSVYKWDIN-GEAEMA--QDESFLICSVIEGSGLLKY--ED-------------------------KT--CPLKKGDHFI  294 (315)
T ss_dssp             CEEEEEEEE-EEEEEC--CCSSCEEEEEEEEEEEEEE--TT-------------------------EE--EEEETTCEEE
T ss_pred             EEEEEEEec-CcEEec--cCCCcEEEEEEeCeEEEEE--CC-------------------------EE--EEEecCcEEE
Confidence            566677775 333222  2356899999999998753  22                         12  4699999999


Q ss_pred             eCCCCeEEEEc
Q 039441          438 IPPGHPIALVA  448 (539)
Q Consensus       438 VPaG~~h~i~n  448 (539)
                      ||++..-+.+.
T Consensus       295 ipa~~~~~~i~  305 (315)
T d1qwra_         295 LPAQMPDFTIK  305 (315)
T ss_dssp             ECTTCCCEEEE
T ss_pred             EECCCCCEEEE
Confidence            99998766654

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=96.79  E-value=0.0012  Score=53.54  Aligned_cols=56  Identities=13%  Similarity=0.144  Sum_probs=41.5

Q ss_pred             EEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCC
Q 039441          363 VEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGH  442 (539)
Q Consensus       363 v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~  442 (539)
                      =..+||.+   +|+-..+|++||++|++.++.  .+|.                        .  .++.+||+++||+|+
T Consensus        23 W~~~pg~f---~~~y~~~E~~~ileG~v~i~~--~~G~------------------------~--~~~~aGD~~~~p~G~   71 (88)
T d1o5ua_          23 WEKEVSEF---DWYYDTNETCYILEGKVEVTT--EDGK------------------------K--YVIEKGDLVTFPKGL   71 (88)
T ss_dssp             EEECSEEE---EEECSSCEEEEEEEEEEEEEE--TTCC------------------------E--EEEETTCEEEECTTC
T ss_pred             EeecCcEE---EEEcCccEEEEEEEeEEEEEc--CCCC------------------------E--EEEeCCCEEEECCCC
Confidence            34567765   344478999999999999864  3441                        2  359999999999999


Q ss_pred             eEEEEcC
Q 039441          443 PIALVAS  449 (539)
Q Consensus       443 ~h~i~n~  449 (539)
                      .-.+...
T Consensus        72 ~~~W~v~   78 (88)
T d1o5ua_          72 RCRWKVL   78 (88)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            9665543

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0026  Score=55.37  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=43.2

Q ss_pred             eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE-EEc
Q 039441          370 MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA-LVA  448 (539)
Q Consensus       370 m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~-i~n  448 (539)
                      |.-||-+ ..-.|.||++|+|.+.+=.                           +  +..|++||+|+||+|.+|. ..+
T Consensus        30 ~~Rp~g~-~~Y~l~yv~~G~G~~~i~~---------------------------~--~y~l~~Gdl~li~P~~~H~y~~~   79 (161)
T d2arca_          30 IDRPLGM-KGYILNLTIRGQGVVKNQG---------------------------R--EFVCRPGDILLFPPGEIHHYGRH   79 (161)
T ss_dssp             EEETTCC-SSEEEEEEEEECEEEEETT---------------------------E--EEEECTTCEEEECTTCCEEEEEC
T ss_pred             EECCCCC-CCEEEEEEEEeEEEEEECC---------------------------E--EEEecCCeEEEEcCCCcEEEEeC
Confidence            3455544 4568999999999996422                           2  2689999999999999996 455


Q ss_pred             CCCCcEEE--EEEe
Q 039441          449 SPNEKLLT--VGFS  460 (539)
Q Consensus       449 ~gne~l~~--v~F~  460 (539)
                      .+++++.+  |.|.
T Consensus        80 ~~~~~w~~~wl~F~   93 (161)
T d2arca_          80 PEAREWYHQWVYFR   93 (161)
T ss_dssp             TTSSEEEEEEEEEC
T ss_pred             CCCCCEEEEEEEEe
Confidence            55555554  4453

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=96.56  E-value=0.0041  Score=56.14  Aligned_cols=61  Identities=20%  Similarity=0.323  Sum_probs=52.9

Q ss_pred             eeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec
Q 039441          206 LEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ  266 (539)
Q Consensus       206 l~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~  266 (539)
                      +.--||.=.-=|+-..++|+|-++|...+-++..|......|++||++.+||.++|+-+=.
T Consensus        40 vVGGPN~R~DyH~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHSPqR~  100 (174)
T d1yfua1          40 VVGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             EECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             EecCCcccCccccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCCcccC
Confidence            3445665555577789999999999999999999988899999999999999999999874

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.49  E-value=0.0091  Score=56.78  Aligned_cols=87  Identities=13%  Similarity=0.216  Sum_probs=52.4

Q ss_pred             EEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCcc-----chhhhhh--hhHHHHHHhh---hcceeeEEeeeCCC
Q 039441          364 EINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW-----SQESQRE--QQEEEEEEES---SRELQKISANLSPG  433 (539)
Q Consensus       364 ~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~-----s~~~~~g--~~~~~~~e~~---~~~y~~~~~~L~~G  433 (539)
                      .-.+|+-+.|||.+ .+.++..+.|+=+..+..|.....     .......  ..-.......   ...-..+...|++|
T Consensus       128 ~~~~g~~~~~H~D~-~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pG  206 (319)
T d1vrba1         128 AAKNGGGFKAHFDA-YTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPG  206 (319)
T ss_dssp             EECSSCCCCSEECS-SEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTT
T ss_pred             ecCCCCCCccccCC-CceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCC
Confidence            34567778999984 477888899999999998864320     0000000  0000000000   00012345679999


Q ss_pred             cEEEeCCCCeEEEEcCCC
Q 039441          434 VVFIIPPGHPIALVASPN  451 (539)
Q Consensus       434 DV~vVPaG~~h~i~n~gn  451 (539)
                      ||++||+|+.|+..|.++
T Consensus       207 DvLYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         207 TMLYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             CEEEECTTCEEEEECSSC
T ss_pred             CEEEeCCCceEEeEecCC
Confidence            999999999999998743

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=96.38  E-value=0.0023  Score=55.91  Aligned_cols=61  Identities=13%  Similarity=-0.035  Sum_probs=48.6

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCC-ceeeecCCCcEEEeCCCCeEEE
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHER-RESFNMEHGDVISVPAGTTYYL  263 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~-~~~~~v~~GDV~~iPaG~~h~i  263 (539)
                      .....++++.|++.+-+|+|.+.+.+||++|+-...   .+. ..-..+.+|+-++.|||++|..
T Consensus        42 g~~~~l~r~~~G~~~p~H~H~~~e~~~VL~G~l~~~---~g~~~~g~~~~~g~y~~~Pag~~H~~  103 (144)
T d2o1qa1          42 GSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR---GGKAAGGDTAIAPGYGYESANARHDK  103 (144)
T ss_dssp             TEEEEEEEECTTEEECCEEESSCEEEEEEEEEEEET---TCGGGTSEEEESSEEEEECTTCEESC
T ss_pred             CcEEEEEEeCCCcCcCCCccccCEEEEEEEEEEEec---CCCcCCCceEeCCceeEcCCCCeEcc
Confidence            345677888999999999999999999999996543   221 2235678999999999999974

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.26  E-value=0.0068  Score=57.70  Aligned_cols=64  Identities=16%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             EeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc-----------------------------------eeeecCC
Q 039441          205 ILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR-----------------------------------ESFNMEH  249 (539)
Q Consensus       205 il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~-----------------------------------~~~~v~~  249 (539)
                      +....+++-.-|||-..+-|...+.|+=+..+..|...                                   ....|++
T Consensus       126 ~~~~~~g~~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p  205 (319)
T d1vrba1         126 VYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTP  205 (319)
T ss_dssp             EEEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECT
T ss_pred             EEecCCCCCCccccCCCceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECC
Confidence            33344455556666557777888999999999877531                                   1246999


Q ss_pred             CcEEEeCCCCeEEEEecCC
Q 039441          250 GDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       250 GDV~~iPaG~~h~i~N~g~  268 (539)
                      |||++||+|..|+..|.++
T Consensus       206 GDvLYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         206 GTMLYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             TCEEEECTTCEEEEECSSC
T ss_pred             CCEEEeCCCceEEeEecCC
Confidence            9999999999999999863

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.96  E-value=0.014  Score=53.05  Aligned_cols=75  Identities=15%  Similarity=0.055  Sum_probs=55.8

Q ss_pred             EEcCCceecceecCC---CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEE
Q 039441          364 EINQGGMMVPHYNSK---ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFI  437 (539)
Q Consensus       364 ~L~pGgm~~PHwhpn---A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~v  437 (539)
                      .-.+|.++..||+..   -+++++|++|+...-+|+....+                   ..| +.....|.+  +.+++
T Consensus        53 ~s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S-------------------~t~g~~~~~~L~~~~~~~l~  113 (183)
T d1dzra_          53 KSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKES-------------------PTFGQWVGVNLSAENKRQLW  113 (183)
T ss_dssp             EEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTC-------------------TTTTCEEEEEEETTTCCEEE
T ss_pred             eeccceeEEEEecccccchhhheeeccccEEEEEEeccCCC-------------------CCCCcEEEEeecCCCceEEE
Confidence            447999999999742   47999999999999999975422                   111 355567755  56999


Q ss_pred             eCCCCeEEEEcCCCCcEEEEE
Q 039441          438 IPPGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       438 VPaG~~h~i~n~gne~l~~v~  458 (539)
                      ||.|++|-..+..+ +..++-
T Consensus       114 IP~G~aHGf~~l~~-~~~i~Y  133 (183)
T d1dzra_         114 IPEGFAHGFVTLSE-YAEFLY  133 (183)
T ss_dssp             ECTTEEEEEEECSS-EEEEEE
T ss_pred             EcCCeEEEEEEecC-cceEEE
Confidence            99999999999854 334443

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.015  Score=52.44  Aligned_cols=68  Identities=12%  Similarity=0.144  Sum_probs=53.2

Q ss_pred             EeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc----eeeecCCCcEEEeCCCCeEEEEecCCCceE
Q 039441          205 ILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR----ESFNMEHGDVISVPAGTTYYLSNQDNVDRL  272 (539)
Q Consensus       205 il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~----~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L  272 (539)
                      .+.--||+=--=|+-..++|+|-++|...+-++..+..    ....|++||+|.+||.++|+=+=..+.-.|
T Consensus        37 mvVGGPN~R~DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~tiGL  108 (175)
T d1zvfa1          37 MIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGI  108 (175)
T ss_dssp             EEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEE
T ss_pred             EEEcCCCcccccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCCceEE
Confidence            33446666556677788999999999999999997632    356799999999999999999976543333

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.72  E-value=0.064  Score=49.14  Aligned_cols=75  Identities=12%  Similarity=0.033  Sum_probs=56.0

Q ss_pred             EcCCceecceecC---CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEe
Q 039441          365 INQGGMMVPHYNS---KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFII  438 (539)
Q Consensus       365 L~pGgm~~PHwhp---nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vV  438 (539)
                      -.+|.++..||+.   ..+++++|+.|+...-+|+..-.+                   ..| +.....|..  +..++|
T Consensus        53 S~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S-------------------~Tfgk~~~~~L~~~~~~~i~I  113 (198)
T d2ixca1          53 SSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGS-------------------PTFGRWDSVLLDDQDRRTIYV  113 (198)
T ss_dssp             ECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTC-------------------TTTTCEEEEEEETTTCCEEEE
T ss_pred             eehhhheeeeeecccchhhhhhhhhhceEEEEEEeccccc-------------------ccCCcEEEEEeecCCcceEEE
Confidence            3799999999973   378999999999999999986321                   111 345567766  559999


Q ss_pred             CCCCeEEEEcCCCCcEEEEEE
Q 039441          439 PPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       439 PaG~~h~i~n~gne~l~~v~F  459 (539)
                      |+|++|-..+..+. ..++-+
T Consensus       114 P~G~aHGf~~L~~~-~~i~Y~  133 (198)
T d2ixca1         114 SEGLAHGFLALQDN-STVMYL  133 (198)
T ss_dssp             CTTCEEEEEECSSS-EEEEEE
T ss_pred             cCCcEEEEEeecCc-ceeecc
Confidence            99999999998553 444433

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=95.62  E-value=0.058  Score=49.59  Aligned_cols=72  Identities=17%  Similarity=0.089  Sum_probs=53.6

Q ss_pred             EEEEcCCceecceecCC---CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeee--CCCcE
Q 039441          362 YVEINQGGMMVPHYNSK---ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANL--SPGVV  435 (539)
Q Consensus       362 ~v~L~pGgm~~PHwhpn---A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L--~~GDV  435 (539)
                      ...-.+|.++..||+..   ..++++|++|+....+|+..-.+                   ..| +.....|  ..+.+
T Consensus        51 ~S~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~S-------------------pTfg~~~~~~L~~~~~~~  111 (202)
T d1oi6a_          51 HSMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGS-------------------PTFGQWDSVLMDQQDPRA  111 (202)
T ss_dssp             EEEECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTC-------------------TTTTCEEEEEECSSSCCE
T ss_pred             hhcchhheeeeeeecccccchhheeeeccccEEEEEEecccCC-------------------Cccceeeeeeccccccee
Confidence            33447999999999854   56999999999999999975321                   111 2333445  45679


Q ss_pred             EEeCCCCeEEEEcCCCC
Q 039441          436 FIIPPGHPIALVASPNE  452 (539)
Q Consensus       436 ~vVPaG~~h~i~n~gne  452 (539)
                      ++||.|++|-..+..+.
T Consensus       112 l~IP~G~aHGf~~L~d~  128 (202)
T d1oi6a_         112 VYLPVGVGHAFVALEDD  128 (202)
T ss_dssp             EEECTTCEEEEEECSTT
T ss_pred             EEeccceeEEEeecccc
Confidence            99999999999998654

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.46  E-value=0.053  Score=48.71  Aligned_cols=75  Identities=20%  Similarity=0.184  Sum_probs=54.1

Q ss_pred             EcCCceecceecCC---CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeee--CCCcEEEeC
Q 039441          365 INQGGMMVPHYNSK---ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANL--SPGVVFIIP  439 (539)
Q Consensus       365 L~pGgm~~PHwhpn---A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L--~~GDV~vVP  439 (539)
                      -++|.++..|++..   -+++++|++|+...-+|+..-.+..                -.  +.....|  ..+.+++||
T Consensus        52 s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~T----------------fg--k~~~~~L~~~~~~~l~IP  113 (176)
T d1wlta1          52 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPT----------------FG--KYVKAELNEENHYMLWIP  113 (176)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTT----------------TT--CEEEEEEETTTCCEEEEC
T ss_pred             echheeeecccccccCCccEEEEEeccceEEEEEeeccCCCc----------------cc--eeeeEEeeccccceEEEc
Confidence            47999999999833   3579999999999999988532100                01  2344455  467799999


Q ss_pred             CCCeEEEEcCCCCcEEEEE
Q 039441          440 PGHPIALVASPNEKLLTVG  458 (539)
Q Consensus       440 aG~~h~i~n~gne~l~~v~  458 (539)
                      +|++|-..+..+. ..++.
T Consensus       114 ~G~ahGf~~l~d~-~~i~Y  131 (176)
T d1wlta1         114 PGFAHGFQALEDS-IVIYF  131 (176)
T ss_dssp             TTEEEEEEESSSE-EEEEE
T ss_pred             cceeeEEeecccc-ceEEE
Confidence            9999999998653 33333

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.40  E-value=0.043  Score=49.62  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             cCCceecceecCC--CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeee--CCCcEEEeCC
Q 039441          366 NQGGMMVPHYNSK--ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANL--SPGVVFIIPP  440 (539)
Q Consensus       366 ~pGgm~~PHwhpn--A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L--~~GDV~vVPa  440 (539)
                      .+|.++..||+..  -+++++|++|+...-+|+..-.+                   ..| +.....|  ..+..++||+
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S-------------------~tfgk~~~~~L~~~~~~~l~IP~  114 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNS-------------------DTYGEWTGVRLSDENRREFFIPE  114 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTC-------------------TTTTCEEEEEEETTTCCEEEECT
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCC-------------------CcCCeeeEEEecCCCcceeEecC
Confidence            6999999999743  47899999999999999975321                   111 2344455  4567999999


Q ss_pred             CCeEEEEcCCCCcEEEEEEeec
Q 039441          441 GHPIALVASPNEKLLTVGFSLN  462 (539)
Q Consensus       441 G~~h~i~n~gne~l~~v~F~~n  462 (539)
                      |++|-..+..++ ..++-+.++
T Consensus       115 G~aHGf~~L~d~-~~i~Y~~s~  135 (183)
T d1ep0a_         115 GFAHGFLALSDE-CIVNYKCTE  135 (183)
T ss_dssp             TEEEEEEECSSE-EEEEEEESS
T ss_pred             CceeeeeeccCc-eEEEEeccC
Confidence            999999997543 444443333

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=95.15  E-value=0.08  Score=48.13  Aligned_cols=72  Identities=11%  Similarity=-0.040  Sum_probs=53.5

Q ss_pred             EcCCceecceecC--C-CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCC
Q 039441          365 INQGGMMVPHYNS--K-ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG  441 (539)
Q Consensus       365 L~pGgm~~PHwhp--n-A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG  441 (539)
                      -.+|.++..||+.  . -+++++|++|+...-+|+..-.+..                -.++..+.-....+.+++||+|
T Consensus        53 s~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t----------------~gk~~~~~l~~~~~~~l~IP~G  116 (190)
T d2c0za1          53 SVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPT----------------YGCWEGTRLDDVSRRAVYLSEG  116 (190)
T ss_dssp             EETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTT----------------TTCEEEEEEETTTCCEEEECTT
T ss_pred             hhhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccce----------------eEEEeeeccccccceeEEecCC
Confidence            3689999999963  2 5699999999999999998632100                0112344455678999999999


Q ss_pred             CeEEEEcCCCC
Q 039441          442 HPIALVASPNE  452 (539)
Q Consensus       442 ~~h~i~n~gne  452 (539)
                      ++|-..+.++.
T Consensus       117 ~aHGf~~L~~~  127 (190)
T d2c0za1         117 IGHGFCAISDE  127 (190)
T ss_dssp             EEEEEEECSSE
T ss_pred             cEEEEeecCch
Confidence            99999997543

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.12  E-value=0.072  Score=48.21  Aligned_cols=68  Identities=18%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             cCCceecceec--CCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeCC
Q 039441          366 NQGGMMVPHYN--SKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIPP  440 (539)
Q Consensus       366 ~pGgm~~PHwh--pnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVPa  440 (539)
                      .+|.++..||+  +.-+++++|++|+...-+|+..-.+                   ..| +.....|..  +.+++||+
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S-------------------~Tfgk~~~~~L~~~~~~~l~IP~  117 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGS-------------------PTFGQWVGERLSAENKRQMWIPA  117 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTS-------------------TTTTCEEEEEEETTTCCEEEECT
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCC-------------------CCCCceEEeeecccCccEEEecC
Confidence            68999999997  3357999999999999999875321                   111 345566755  67999999


Q ss_pred             CCeEEEEcCCCC
Q 039441          441 GHPIALVASPNE  452 (539)
Q Consensus       441 G~~h~i~n~gne  452 (539)
                      |++|-..+..++
T Consensus       118 G~aHGf~~L~~~  129 (184)
T d2ixha1         118 GFAHGFVVLSEY  129 (184)
T ss_dssp             TEEEEEEECSSE
T ss_pred             CeEEEEEecCCc
Confidence            999999998543

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.021  Score=55.54  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=53.6

Q ss_pred             EEEcCC-ceecceecCCCCEEEEEEeceEEEEEecCCCCcc-------chhhhhhh-hHHHH-HHh--hhcceeeEEeee
Q 039441          363 VEINQG-GMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW-------SQESQREQ-QEEEE-EEE--SSRELQKISANL  430 (539)
Q Consensus       363 v~L~pG-gm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~-------s~~~~~g~-~~~~~-~e~--~~~~y~~~~~~L  430 (539)
                      +-|.+. +....||-+. +.+..++.|+=++.++.|.....       ...+.... .-... -+.  .-..-+.+...|
T Consensus       173 lwiG~~gs~t~~H~D~~-~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l  251 (335)
T d1h2ka_         173 LLIGMEGNVTPAHYDEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV  251 (335)
T ss_dssp             EEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred             EEEcCCCCCCccccccc-cceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEE
Confidence            445544 4455588754 78899999999999998853210       00000000 00000 000  001113455679


Q ss_pred             CCCcEEEeCCCCeEEEEcCCCCcEEE
Q 039441          431 SPGVVFIIPPGHPIALVASPNEKLLT  456 (539)
Q Consensus       431 ~~GDV~vVPaG~~h~i~n~gne~l~~  456 (539)
                      ++||+++||+|+.|++.|..+..+.+
T Consensus       252 ~pGd~L~iP~~w~H~V~~~~~~~~si  277 (335)
T d1h2ka_         252 GPGDVLYIPMYWWHHIESLLNGGITI  277 (335)
T ss_dssp             CTTCEEEECTTCEEEEEECTTSCCEE
T ss_pred             CCCCEEeeCCCCeEEEEEcCCCCeEE
Confidence            99999999999999999975544433

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=94.28  E-value=0.11  Score=47.33  Aligned_cols=67  Identities=7%  Similarity=-0.034  Sum_probs=51.2

Q ss_pred             cCCceecceecCCCCEEEEEE-eceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeE
Q 039441          366 NQGGMMVPHYNSKATTIVLVV-EGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI  444 (539)
Q Consensus       366 ~pGgm~~PHwhpnA~ei~yV~-~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h  444 (539)
                      .+|.++..||++.+ ++++|+ .|....-+|+...+.                   .-.+.+...|..+..++||+|++|
T Consensus        65 ~kgvlRGlH~q~~~-k~v~~~~~G~i~~V~vD~R~S~-------------------t~g~~~~~~l~~~~~i~IP~G~aH  124 (194)
T d1nxma_          65 RKNVLRGLHAEPWD-KYISVADGGKVLGTWVDLREGE-------------------TFGNTYQTVIDASKSIFVPRGVAN  124 (194)
T ss_dssp             ETTBEEEEEECSSC-EEEEECSSCCEEEEEEECBSST-------------------TTTCEEEEEECTTEEEEECTTEEE
T ss_pred             eeeEEEEEEeccch-hhhhhccccceeEEEEEecccc-------------------ccceeeeeeeccCceEEEecceee
Confidence            68999999999765 556555 699999888875311                   011456677899999999999999


Q ss_pred             EEEcCCCC
Q 039441          445 ALVASPNE  452 (539)
Q Consensus       445 ~i~n~gne  452 (539)
                      -..+..++
T Consensus       125 Gf~tL~d~  132 (194)
T d1nxma_         125 GFQVLSDF  132 (194)
T ss_dssp             EEEECSSE
T ss_pred             EEEeeccc
Confidence            99998654

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=94.00  E-value=0.22  Score=45.08  Aligned_cols=76  Identities=8%  Similarity=0.039  Sum_probs=56.3

Q ss_pred             eEEEeeeCCCeeeccccc----CCCcEEEEEeceEEEEEEeCCCc-------ee--eecCCCcEEEeCCCCeEEEEecCC
Q 039441          202 RLAILEANPSTLVVPHHS----DAETILVLLKGKGVITLVSHERR-------ES--FNMEHGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       202 Rl~il~l~P~~l~lPh~~----dA~~~~yV~~G~g~i~~v~pg~~-------~~--~~v~~GDV~~iPaG~~h~i~N~g~  268 (539)
                      -..+-...++.|+=.||.    ....|++|++|+....+|+....       ..  .+...+.+++||+|.+|-.+...+
T Consensus        47 q~n~S~s~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~  126 (190)
T d2c0za1          47 QANLSVSVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISD  126 (190)
T ss_dssp             EEEEEEEETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS
T ss_pred             eeeehhhhhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCc
Confidence            334445589999989963    35689999999999999986532       12  355789999999999999999873


Q ss_pred             CceEEEEEEec
Q 039441          269 VDRLHVAKLLQ  279 (539)
Q Consensus       269 ~e~L~iv~l~d  279 (539)
                        +..|+...+
T Consensus       127 --~t~i~Y~~s  135 (190)
T d2c0za1         127 --EATLCYLSS  135 (190)
T ss_dssp             --EEEEEEEES
T ss_pred             --hheeEEecC
Confidence              334444444

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.074  Score=51.52  Aligned_cols=62  Identities=19%  Similarity=0.154  Sum_probs=46.4

Q ss_pred             eeCCCeeecccccC-CCcEEEEEeceEEEEEEeCCCc------------------------------------eeeecCC
Q 039441          207 EANPSTLVVPHHSD-AETILVLLKGKGVITLVSHERR------------------------------------ESFNMEH  249 (539)
Q Consensus       207 ~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~~------------------------------------~~~~v~~  249 (539)
                      -|-+.+-..|.|.| .+-|..++.|+=.+.++.|...                                    ....|++
T Consensus       174 wiG~~gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l~p  253 (335)
T d1h2ka_         174 LIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGP  253 (335)
T ss_dssp             EEECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEECT
T ss_pred             EEcCCCCCCccccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEECC
Confidence            34666666664444 4567778999999999877521                                    1246899


Q ss_pred             CcEEEeCCCCeEEEEecCC
Q 039441          250 GDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       250 GDV~~iPaG~~h~i~N~g~  268 (539)
                      ||+++||+|..|++.|.++
T Consensus       254 Gd~L~iP~~w~H~V~~~~~  272 (335)
T d1h2ka_         254 GDVLYIPMYWWHHIESLLN  272 (335)
T ss_dssp             TCEEEECTTCEEEEEECTT
T ss_pred             CCEEeeCCCCeEEEEEcCC
Confidence            9999999999999999864

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.86  E-value=0.25  Score=45.06  Aligned_cols=102  Identities=13%  Similarity=0.101  Sum_probs=66.7

Q ss_pred             eEecCCceEEEeeccCccc-cccc--CcceeeEEEeeeCCCeeeccccc----CCCcEEEEEeceEEEEEEeCCC--c--
Q 039441          174 RVRSDSGHMRVLQRFSQKS-HLLR--GIDNYRLAILEANPSTLVVPHHS----DAETILVLLKGKGVITLVSHER--R--  242 (539)
Q Consensus       174 ~v~se~G~i~vl~~f~~~s-~~l~--gv~~~Rl~il~l~P~~l~lPh~~----dA~~~~yV~~G~g~i~~v~pg~--~--  242 (539)
                      +++.+-|.+..  .|+.+. ..+-  .....-+-+-..++++|+=.||.    ....+++|+.|+....+|+-..  +  
T Consensus        18 ~f~D~RG~f~e--~f~~~~~~~~~~~~~~~~Q~n~S~S~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tf   95 (198)
T d2ixca1          18 IHVDSRGLFFE--WLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTF   95 (198)
T ss_dssp             CEEETTEEEEE--EEEHHHHHHHHSSCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTT
T ss_pred             eeEcCCcCeEE--eecHHHHHHhhccCccceeeeeeeeehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccC
Confidence            45566676642  454322 1111  22222333444589999999974    4779999999999999998542  2  


Q ss_pred             ---eeeecCCCc--EEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          243 ---ESFNMEHGD--VISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       243 ---~~~~v~~GD--V~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                         ..+.|...+  .++||+|.+|-.+...++  ..|+.+.+
T Consensus        96 gk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~--~~i~Y~~s  135 (198)
T d2ixca1          96 GRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN--STVMYLCS  135 (198)
T ss_dssp             TCEEEEEEETTTCCEEEECTTCEEEEEECSSS--EEEEEEES
T ss_pred             CcEEEEEeecCCcceEEEcCCcEEEEEeecCc--ceeecccC
Confidence               356776654  999999999999999743  33444444

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.15  Score=51.82  Aligned_cols=80  Identities=13%  Similarity=0.061  Sum_probs=52.9

Q ss_pred             CceEEEeCCcccccccccceeEEEEEEcCCceec-ceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHH
Q 039441          339 FGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMV-PHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEE  417 (539)
Q Consensus       339 ~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~-PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e  417 (539)
                      -|..+.+. .--|.++. ||++..... .-+|-- -.+|.++++++||.+|+|.+.--.-                    
T Consensus       113 ~Gl~t~~g-~Gd~~~~~-G~aihiy~~-n~sM~~~~f~NADGDeLi~~~~Gsg~l~TefG--------------------  169 (439)
T d1eyba_         113 SGLHTLCG-AGDIKSNN-GLAIHIFLC-NTSMENRCFYNSDGDFLIVPQKGNLLIYTEFG--------------------  169 (439)
T ss_dssp             TTEEEEEE-ESCGGGTC-CEEEEEEEE-CSCCCSEEEEESSEEEEEEEEESCEEEEETTE--------------------
T ss_pred             hceeeecc-cCCccccc-CcEEEEEec-CCCCccceeEcCCCCEEEEEEeCcEEEEEeee--------------------
Confidence            35444443 33344432 455444433 335643 4689999999999999998854432                    


Q ss_pred             hhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCC
Q 039441          418 ESSRELQKISANLSPGVVFIIPPGHPIALVASP  450 (539)
Q Consensus       418 ~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~g  450 (539)
                             .  -.+++||++|||+|..+.+.-.+
T Consensus       170 -------~--L~v~pGDyvVIPRG~~frv~~~~  193 (439)
T d1eyba_         170 -------K--MLVQPNEICVIQRGMRFSIDVFE  193 (439)
T ss_dssp             -------E--EEECTTEEEEECTTCCEEEECSS
T ss_pred             -------E--EEecCCcEEEecCceEEEEecCC
Confidence                   2  36999999999999988776543

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.63  E-value=0.3  Score=43.53  Aligned_cols=71  Identities=11%  Similarity=0.145  Sum_probs=53.3

Q ss_pred             eeCCCeeeccccc----CCCcEEEEEeceEEEEEEeCCC--c-----eeeec--CCCcEEEeCCCCeEEEEecCCCceEE
Q 039441          207 EANPSTLVVPHHS----DAETILVLLKGKGVITLVSHER--R-----ESFNM--EHGDVISVPAGTTYYLSNQDNVDRLH  273 (539)
Q Consensus       207 ~l~P~~l~lPh~~----dA~~~~yV~~G~g~i~~v~pg~--~-----~~~~v--~~GDV~~iPaG~~h~i~N~g~~e~L~  273 (539)
                      ..++|+|+=.||.    ....++||+.|+....+|+...  +     ..+.|  ..+.+++||+|++|-.+...+ . ..
T Consensus        51 ~s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d-~-~~  128 (176)
T d1wlta1          51 FSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALED-S-IV  128 (176)
T ss_dssp             EECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSS-E-EE
T ss_pred             eechheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccc-c-ce
Confidence            4589999999976    3456999999999999998642  2     24555  467799999999999999974 3 33


Q ss_pred             EEEEec
Q 039441          274 VAKLLQ  279 (539)
Q Consensus       274 iv~l~d  279 (539)
                      ++.+.+
T Consensus       129 i~Y~~~  134 (176)
T d1wlta1         129 IYFITH  134 (176)
T ss_dssp             EEEEES
T ss_pred             EEEecC
Confidence            444444

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=93.57  E-value=0.13  Score=52.24  Aligned_cols=77  Identities=16%  Similarity=0.244  Sum_probs=52.4

Q ss_pred             eeEEEeeeCCCe--eecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC--CceEEEEE
Q 039441          201 YRLAILEANPST--LVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN--VDRLHVAK  276 (539)
Q Consensus       201 ~Rl~il~l~P~~--l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~--~e~L~iv~  276 (539)
                      +.+..+++.+..  -....-.+...|++|++|+++|..- .+...+..|++||+++||||+..-|.+.+.  .+.+.++-
T Consensus       357 F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~~-~~~~~~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~~r  435 (440)
T d1pmia_         357 FSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQIT-GDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYR  435 (440)
T ss_dssp             CEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEET-TCGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCEEEE
T ss_pred             eEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEec-CCCccEEEeCCceEEEEcCCceEEEEeecCCCCCceEEEE
Confidence            344445556532  2333345778999999999988752 222347899999999999999988888764  34555544


Q ss_pred             Ee
Q 039441          277 LL  278 (539)
Q Consensus       277 l~  278 (539)
                      .|
T Consensus       436 A~  437 (440)
T d1pmia_         436 AF  437 (440)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.26  E-value=0.29  Score=44.00  Aligned_cols=75  Identities=9%  Similarity=0.006  Sum_probs=55.0

Q ss_pred             EEEeeeCCCeeecccccC----CCcEEEEEeceEEEEEEeCCC--c-----eeeecCC--CcEEEeCCCCeEEEEecCCC
Q 039441          203 LAILEANPSTLVVPHHSD----AETILVLLKGKGVITLVSHER--R-----ESFNMEH--GDVISVPAGTTYYLSNQDNV  269 (539)
Q Consensus       203 l~il~l~P~~l~lPh~~d----A~~~~yV~~G~g~i~~v~pg~--~-----~~~~v~~--GDV~~iPaG~~h~i~N~g~~  269 (539)
                      ..+-..++|+|+=.||..    ...+++|++|+....+|+...  +     .++.|..  +.+++||+|.+|-.+...+ 
T Consensus        49 ~n~S~s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~-  127 (183)
T d1dzra_          49 DNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE-  127 (183)
T ss_dssp             EEEEEEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS-
T ss_pred             eEEeeeccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecC-
Confidence            333445899999999753    468999999999999998542  1     3566654  5599999999999999963 


Q ss_pred             ceEEEEEEec
Q 039441          270 DRLHVAKLLQ  279 (539)
Q Consensus       270 e~L~iv~l~d  279 (539)
                       ...++...+
T Consensus       128 -~~~i~Y~~~  136 (183)
T d1dzra_         128 -YAEFLYKAT  136 (183)
T ss_dssp             -EEEEEEEES
T ss_pred             -cceEEEeCC
Confidence             333444444

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=93.10  E-value=0.076  Score=51.41  Aligned_cols=78  Identities=15%  Similarity=0.198  Sum_probs=51.3

Q ss_pred             ceeeEEEeeeCCCeeecccccCCCcEEEEEec--eEEEEEEeCC-C-----ceeeecCCCcEEEeCCCCeEEEEecCCCc
Q 039441          199 DNYRLAILEANPSTLVVPHHSDAETILVLLKG--KGVITLVSHE-R-----RESFNMEHGDVISVPAGTTYYLSNQDNVD  270 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G--~g~i~~v~pg-~-----~~~~~v~~GDV~~iPaG~~h~i~N~g~~e  270 (539)
                      ...|+.+|.|.|++.+-|| .|-.+..+-..+  +.-|.++.+. |     ..++.+++|.+|++-.+.+|++.|.++..
T Consensus        89 ~~~r~~rirL~pGg~I~pH-~D~~~~~~~~~~~~RiHIPL~Tn~~~~f~v~~~~~~m~~Ge~w~~D~~~~H~v~N~sd~d  167 (290)
T d1e5ra_          89 THLQMARSRNLKNAIVIPH-RDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEIS  167 (290)
T ss_dssp             SSEEEEEEEEEESEEEEEE-CCC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSC
T ss_pred             ceeeeeeeeecCCcEecCC-cCCccccccCCceEEEEEEeecCCceEEEECCEEEECCCCeEEEEcCCCeEEEECCCCCc
Confidence            4567888888999998885 443332221122  4455555443 2     25789999999999999999999998766


Q ss_pred             eEEEEEEec
Q 039441          271 RLHVAKLLQ  279 (539)
Q Consensus       271 ~L~iv~l~d  279 (539)
                      +++  +|+|
T Consensus       168 RIH--LViD  174 (290)
T d1e5ra_         168 RQS--LCVD  174 (290)
T ss_dssp             CCE--EEEE
T ss_pred             eEE--EEEE
Confidence            554  4555

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=93.04  E-value=0.33  Score=43.48  Aligned_cols=77  Identities=17%  Similarity=0.179  Sum_probs=60.0

Q ss_pred             ceeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeC---CC-----ceeeecCCCcEEEeCCC-CeEEEEecCC
Q 039441          199 DNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSH---ER-----RESFNMEHGDVISVPAG-TTYYLSNQDN  268 (539)
Q Consensus       199 ~~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~p---g~-----~~~~~v~~GDV~~iPaG-~~h~i~N~g~  268 (539)
                      ..+-|.+|.-.|+...-+| |.++..|+.|+.|....+.-.-   +.     ..+..+.+|||.++... -+|.|.|.+.
T Consensus        64 ~~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~  143 (186)
T d3elna1          64 GKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSH  143 (186)
T ss_dssp             GTCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCS
T ss_pred             CCeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCC
Confidence            3467888888999999999 7899999999999999998752   21     13578899999988654 4899999875


Q ss_pred             CceEEEE
Q 039441          269 VDRLHVA  275 (539)
Q Consensus       269 ~e~L~iv  275 (539)
                      ++..+.+
T Consensus       144 ~~~avsL  150 (186)
T d3elna1         144 TEPAVSL  150 (186)
T ss_dssp             SCCEEEE
T ss_pred             CCCeEEE
Confidence            5554433

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=4.4  Score=38.28  Aligned_cols=179  Identities=15%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             cCCCcEE-EEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe-cCCCceEEEEEEeccCCCCCCceeccccCcc
Q 039441          219 SDAETIL-VLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN-QDNVDRLHVAKLLQPVNTPGQFRVQQRQQGT  296 (539)
Q Consensus       219 ~dA~~~~-yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N-~g~~e~L~iv~l~d~~n~pg~f~~~~q~~G~  296 (539)
                      +.--+++ ..+.|.|+|++    .-++|.|...|.++||.|....++. .+...+.+|+..--|...          .=-
T Consensus        73 LerRElgiVnlgG~g~V~V----DG~~feL~~rd~lYvg~G~~~V~f~s~da~~pa~fyl~SAPAh~----------~yP  138 (277)
T d1xrua1          73 LERRELGVINIGGAGTITV----DGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAHT----------TYP  138 (277)
T ss_dssp             TTTEEEEEEECSSCEEEEE----TTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECSS----------CCC
T ss_pred             hhccEEEEEEeCCCEEEEE----CCEEEeeCCccEEEeCCCCceEEEeccCCCCCcEEEEEecccCC----------CCC
Confidence            3333444 46788888887    3467899999999999997654443 221222333222222110          000


Q ss_pred             EEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEE-eCCcccccccccceeEEEEEEcCCce---ec
Q 039441          297 IKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFE-ATPKDYQQLQEIDAGVTYVEINQGGM---MV  372 (539)
Q Consensus       297 Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~-~~~~~fP~L~~l~isva~v~L~pGgm---~~  372 (539)
                      ..++..++...+.                  +-+..   .++.-.|+. +.+..++.   -.+-|....|+|||.   ++
T Consensus       139 tr~i~~~da~~~~------------------~G~~~---~sN~R~I~~~i~p~~~~s---~qLlmG~tvl~PGg~WSSyP  194 (277)
T d1xrua1         139 TKKVTPDEVSPVT------------------LGDNL---TSNRRTINKYFVPDVLET---CQLSMGLTELAPGNLWNTMP  194 (277)
T ss_dssp             CEEECHHHHCCEE------------------ECCGG---GTCCEEEEEEESTTTCCC---SSCEEEEEEECTTCCEESCS
T ss_pred             cEEECHHHCCeEe------------------eccCC---CcceEEEEEEecCCCccc---ceEEEEEEEEcCCCccCCCC
Confidence            1111222111000                  00000   001122332 44443433   347788888999985   69


Q ss_pred             ceecCCCCEEEEEEe---ceEEEEEec-CCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEc
Q 039441          373 PHYNSKATTIVLVVE---GRGRFEMGG-PLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA  448 (539)
Q Consensus       373 PHwhpnA~ei~yV~~---G~g~v~vV~-p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n  448 (539)
                      ||-|-+..|..|..+   +...+.+.. |+                         .....-|+-+|+++.|.-++|.-.-
T Consensus       195 pHkHDRrmEeyyYF~l~~~~~Vfh~mGep~-------------------------etrhivv~neqaVisP~wsih~g~g  249 (277)
T d1xrua1         195 CHTHERRMEVYFYFNMDDDACVFHMMGQPQ-------------------------ETRHIVMHNEQAVISPSWSIHSGVG  249 (277)
T ss_dssp             EEECTTEEEEEEEESCCTTCCEEEEEEETT-------------------------EEEEEEECSSEEEEECTTCEEEEEE
T ss_pred             CccCCCCcceEEEEEcCCCceEEEecCCCC-------------------------ceeEEEEECCcEEECCCCcccCCCC
Confidence            999977666666554   222222222 22                         1222358999999999888988655


Q ss_pred             CCCCcEEEEEEe
Q 039441          449 SPNEKLLTVGFS  460 (539)
Q Consensus       449 ~gne~l~~v~F~  460 (539)
                      +.|=.+.|.-..
T Consensus       250 t~~y~fiW~maG  261 (277)
T d1xrua1         250 TKAYTFIWGMVG  261 (277)
T ss_dssp             SSCCEEEEEEEE
T ss_pred             CcceEEEEEEcc
Confidence            555444554433

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.29  E-value=0.32  Score=43.58  Aligned_cols=111  Identities=9%  Similarity=0.049  Sum_probs=69.1

Q ss_pred             CCceeecCccceeEecCCceEEEeeccCccc-cc-ccCcceeeEEEeeeCCCeeecccccC---CCcEEEEEeceEEEEE
Q 039441          162 NPYYFHSQRFRYRVRSDSGHMRVLQRFSQKS-HL-LRGIDNYRLAILEANPSTLVVPHHSD---AETILVLLKGKGVITL  236 (539)
Q Consensus       162 ~py~f~~~~f~~~v~se~G~i~vl~~f~~~s-~~-l~gv~~~Rl~il~l~P~~l~lPh~~d---A~~~~yV~~G~g~i~~  236 (539)
                      ..|+++..    ++.-+-|.+.  +.|+... .. .-+....-..+-...++.|+=.||..   ...+++|+.|+....+
T Consensus        11 gv~ii~~~----~f~D~RG~f~--e~f~~~~~~~~~~~~~~~q~n~s~s~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~   84 (183)
T d1ep0a_          11 GAIIIEPE----VYTDERGYFM--ETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRGEIFDVA   84 (183)
T ss_dssp             TCEEEEEC----EEEETTEEEE--CCCCHHHHHHTTCCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEE
T ss_pred             CcEEEECc----eeECCCcCEE--eehhhHHHHHhCCCceeeEeeeeeeccCceEEeeecCCCcHHhhhcccccEEEEEE
Confidence            34555543    4456667764  3454322 10 01222222223334789999999653   3779999999999999


Q ss_pred             EeCCC--c-----eeeec--CCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441          237 VSHER--R-----ESFNM--EHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP  280 (539)
Q Consensus       237 v~pg~--~-----~~~~v--~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~  280 (539)
                      |+...  +     .++.|  ..+..++||+|++|-.+-..+  ...|+.+.+.
T Consensus        85 vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d--~~~i~Y~~s~  135 (183)
T d1ep0a_          85 VDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSD--ECIVNYKCTE  135 (183)
T ss_dssp             EECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS--EEEEEEEESS
T ss_pred             EeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccC--ceEEEEeccC
Confidence            98642  1     34555  446699999999999999863  3444555543

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=92.27  E-value=0.55  Score=41.81  Aligned_cols=61  Identities=15%  Similarity=0.148  Sum_probs=48.9

Q ss_pred             EEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCC
Q 039441          363 VEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGH  442 (539)
Q Consensus       363 v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~  442 (539)
                      +.=-|+.=.-=|++ -..|+.|=++|...+-|+..+                         +..+..+++||+|.+|+..
T Consensus        40 vVGGPN~R~DyH~~-~~eE~FyQlkG~m~Lkv~e~g-------------------------~~~di~I~EGe~fLLP~~v   93 (174)
T d1yfua1          40 VVGGPNHRTDYHDD-PLEEFFYQLRGNAYLNLWVDG-------------------------RRERADLKEGDIFLLPPHV   93 (174)
T ss_dssp             EECSCBCCCCEEEC-SSCEEEEEEESCEEEEEEETT-------------------------EEEEEEECTTCEEEECTTC
T ss_pred             EecCCcccCccccC-cchhheeeeccceEEEEEeCC-------------------------ceEEEEcCCCcEEEeCCCC
Confidence            44455655555776 578999999999999999864                         3556789999999999999


Q ss_pred             eEEEEcC
Q 039441          443 PIALVAS  449 (539)
Q Consensus       443 ~h~i~n~  449 (539)
                      ||.-.-.
T Consensus        94 pHSPqR~  100 (174)
T d1yfua1          94 RHSPQRP  100 (174)
T ss_dssp             CEEEEBC
T ss_pred             CCCcccC
Confidence            9998663

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=91.91  E-value=0.53  Score=42.87  Aligned_cols=66  Identities=11%  Similarity=0.108  Sum_probs=51.2

Q ss_pred             EEEeeeCCCeeecccccC----CCcEEEEEeceEEEEEEeCCC-------ceeeecC--CCcEEEeCCCCeEEEEecCC
Q 039441          203 LAILEANPSTLVVPHHSD----AETILVLLKGKGVITLVSHER-------RESFNME--HGDVISVPAGTTYYLSNQDN  268 (539)
Q Consensus       203 l~il~l~P~~l~lPh~~d----A~~~~yV~~G~g~i~~v~pg~-------~~~~~v~--~GDV~~iPaG~~h~i~N~g~  268 (539)
                      ..+-..+++.|+=.||..    ...+++|++|+....+|+-..       ...+.|.  .+.+++||+|.+|-.+...+
T Consensus        49 ~n~S~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d  127 (202)
T d1oi6a_          49 TIHSMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALED  127 (202)
T ss_dssp             EEEEEECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECST
T ss_pred             ehhhcchhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccc
Confidence            334455899999999763    468999999999999998532       1345554  56799999999999999974

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=91.34  E-value=1.4  Score=39.01  Aligned_cols=87  Identities=8%  Similarity=0.021  Sum_probs=63.5

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      ++.+..+...||.-..+|=|+++.-|+.|+.|....++..-.....                 ..--..-+..|.+|+|.
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~-----------------~~l~~~~~~~~~~g~v~  127 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKS-----------------NEMIKKSERTLRENQCA  127 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSC-----------------CCCCEEEEEEECTTCEE
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCc-----------------ccccccceEEecCCCEE
Confidence            3778889999999999999999999999999999999986321110                 00001234678999999


Q ss_pred             EeCCC-CeEEEEcCC-CCcEEEEEEe
Q 039441          437 IIPPG-HPIALVASP-NEKLLTVGFS  460 (539)
Q Consensus       437 vVPaG-~~h~i~n~g-ne~l~~v~F~  460 (539)
                      ++... -.|-+.|.+ ++..+.|-+.
T Consensus       128 ~~~~~~~iH~v~N~~~~~~avsLHvY  153 (186)
T d3elna1         128 YINDSIGLHRVENVSHTEPAVSLHLY  153 (186)
T ss_dssp             EECTTTCEEEEECCCSSCCEEEEEEE
T ss_pred             EeCCCCCcceeecCCCCCCeEEEEEe
Confidence            88655 489999975 4565555443

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.64  E-value=0.76  Score=41.13  Aligned_cols=101  Identities=11%  Similarity=0.026  Sum_probs=64.4

Q ss_pred             EecCCceEEEeeccCccc--cccc-CcceeeEEEeeeCCCeeeccccc---CCCcEEEEEeceEEEEEEeCCC-------
Q 039441          175 VRSDSGHMRVLQRFSQKS--HLLR-GIDNYRLAILEANPSTLVVPHHS---DAETILVLLKGKGVITLVSHER-------  241 (539)
Q Consensus       175 v~se~G~i~vl~~f~~~s--~~l~-gv~~~Rl~il~l~P~~l~lPh~~---dA~~~~yV~~G~g~i~~v~pg~-------  241 (539)
                      +.-+-|.+.  +.|+...  ..+. .....-..+-.-++++|+=.||.   ....+++|++|+....+|+...       
T Consensus        22 f~D~RG~f~--e~f~~~~~~~~~~~~~~~~q~n~S~s~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk   99 (184)
T d2ixha1          22 FGDDRGFFF--ESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQ   99 (184)
T ss_dssp             EEETTEEEC--CSCCHHHHHHHHSSCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTC
T ss_pred             EecCCccEE--EeecHHHHHHhhCCCcccccceEEEcccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCc
Confidence            455666654  3455322  1111 22222333444578999988864   3468999999999999998542       


Q ss_pred             ceeeecCC--CcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          242 RESFNMEH--GDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       242 ~~~~~v~~--GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      -..+.|..  +.+++||+|++|-.+-..+ . ..|+...+
T Consensus       100 ~~~~~L~~~~~~~l~IP~G~aHGf~~L~~-~-~~v~Y~~s  137 (184)
T d2ixha1         100 WVGERLSAENKRQMWIPAGFAHGFVVLSE-Y-AEFLYKTT  137 (184)
T ss_dssp             EEEEEEETTTCCEEEECTTEEEEEEECSS-E-EEEEEEES
T ss_pred             eEEeeecccCccEEEecCCeEEEEEecCC-c-eEEEeccc
Confidence            23556655  6689999999999999963 2 33444444

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.54  E-value=0.47  Score=42.31  Aligned_cols=65  Identities=12%  Similarity=0.104  Sum_probs=50.8

Q ss_pred             EEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCC
Q 039441          363 VEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGH  442 (539)
Q Consensus       363 v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~  442 (539)
                      +.=-|+.=.-=|++ -..|+.|=++|...+-|+..+...       |              +..+-.+++||+|.+|+..
T Consensus        38 vVGGPN~R~DyH~~-~~eE~FYQlkGdm~Lkv~~~~~~~-------g--------------k~~di~I~EGe~fLLP~~v   95 (175)
T d1zvfa1          38 IVGGPNERTDYHIN-PTPEWFYQKKGSMLLKVVDETDAE-------P--------------KFIDIIINEGDSYLLPGNV   95 (175)
T ss_dssp             EECSSBCCSCEEEC-SSCEEEEEEESCEEEEEEECSSSS-------C--------------EEEEEEECTTEEEEECTTC
T ss_pred             EEcCCCcccccccC-cchhheeeecCcEEEEEEecCCCC-------C--------------ceeEEeecCCCEEEeCCCC
Confidence            33467777767777 578999999999999999875311       0              3556789999999999999


Q ss_pred             eEEEEcC
Q 039441          443 PIALVAS  449 (539)
Q Consensus       443 ~h~i~n~  449 (539)
                      ||.=.-.
T Consensus        96 PHSPqR~  102 (175)
T d1zvfa1          96 PHSPVRF  102 (175)
T ss_dssp             CEEEEEC
T ss_pred             CCCCCCC
Confidence            9997654

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.95  E-value=5.3  Score=37.35  Aligned_cols=70  Identities=19%  Similarity=0.233  Sum_probs=38.5

Q ss_pred             ceeEEEEEEcCCc---eecceecCCCCEEEEEEe---ceEEEEEec-CCCCccchhhhhhhhHHHHHHhhhcceeeEEee
Q 039441          357 DAGVTYVEINQGG---MMVPHYNSKATTIVLVVE---GRGRFEMGG-PLSSRWSQESQREQQEEEEEEESSRELQKISAN  429 (539)
Q Consensus       357 ~isva~v~L~pGg---m~~PHwhpnA~ei~yV~~---G~g~v~vV~-p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~  429 (539)
                      .+-|..-.|+|||   -++||-|-+..|..|...   +...+.+.. |+-                    +   +.+  -
T Consensus       174 qLlmG~tvl~pGg~WsS~PpH~HDRrmE~YyYFdl~e~~~V~H~mGep~e--------------------T---rhi--v  228 (260)
T d1ywka1         174 QLQMGYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDE--------------------T---KHL--V  228 (260)
T ss_dssp             SCEEEEEEECTTCCCCC--------CEEEEEEESCCTTCCEEEEESSTTS--------------------C---EEE--E
T ss_pred             ceEEEEEEEcCCCccCCcCCcccCCCCceEEEEEcCCCceEEEeeCCCCc--------------------e---EEE--E
Confidence            4777788899998   369999977777776653   112222222 221                    0   222  4


Q ss_pred             eCCCcEEEeCCCCeEEEEcCCC
Q 039441          430 LSPGVVFIIPPGHPIALVASPN  451 (539)
Q Consensus       430 L~~GDV~vVPaG~~h~i~n~gn  451 (539)
                      |+-+|+++.|.=..|.-..+.|
T Consensus       229 v~n~qaVisP~wsiHsg~gt~~  250 (260)
T d1ywka1         229 MSNEQAAISPSWSIHSGVGTSN  250 (260)
T ss_dssp             ECTTEEEEECTTSCCCEEESSC
T ss_pred             EECCcEEEcCCccccCCCCccC
Confidence            8999999999988886555544

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.85  E-value=3.8  Score=34.91  Aligned_cols=103  Identities=11%  Similarity=0.074  Sum_probs=64.5

Q ss_pred             CCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEece-EEEEEecCCCCccchhhhhhhhHHHHH
Q 039441          338 NFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR-GRFEMGGPLSSRWSQESQREQQEEEEE  416 (539)
Q Consensus       338 ~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~-g~v~vV~p~gs~~s~~~~~g~~~~~~~  416 (539)
                      .+|.+.++.......-+. .+++.+.-|+++....-|-..+++||-+...|. ..+-++.+++.-               
T Consensus        18 EGG~f~et~rs~~~~~R~-~~T~IYyLL~~~~~s~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~---------------   81 (140)
T d1znpa1          18 EGGFYHQTFRDKAGGERG-HSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREV---------------   81 (140)
T ss_dssp             TSSEEEEEEECSSSTTTC-SCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCC---------------
T ss_pred             CCceEEEEEECCCCCCCc-ceEEEEEEcCCCCCCccccccCCCeEEEEcCCceEEEEEecCCCCE---------------
Confidence            355555443332222222 356666778899876333323578888888987 778888887632               


Q ss_pred             HhhhcceeeEEeeeCCCc--EEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441          417 EESSRELQKISANLSPGV--VFIIPPGHPIALVASPNEKLLTVGFSLNA  463 (539)
Q Consensus       417 e~~~~~y~~~~~~L~~GD--V~vVPaG~~h~i~n~gne~l~~v~F~~na  463 (539)
                           +-.++-.++..|+  .+|||+|+.......+  ...+|+-.+.+
T Consensus        82 -----~~~~lG~~~~~ge~~q~vVp~g~W~aa~~~g--~~sLvsctVaP  123 (140)
T d1znpa1          82 -----QTFTLGPAILEGERPQVIVPANCWQSAESLG--DFTLVGCTVSP  123 (140)
T ss_dssp             -----EEEEESSCTTTTEESEEEECTTCEEEEEESS--SEEEEEEEESS
T ss_pred             -----EEEEecCCcccCCceeEEECCCeEEeeeECC--CeEEEEeEecC
Confidence                 0023335577787  7899999988776553  46677656665

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=88.90  E-value=1.3  Score=39.69  Aligned_cols=70  Identities=16%  Similarity=0.188  Sum_probs=52.6

Q ss_pred             eeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCC-C------ceeeecCCCcEEEe--CCCCeEEEEecCCCc
Q 039441          201 YRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHE-R------RESFNMEHGDVISV--PAGTTYYLSNQDNVD  270 (539)
Q Consensus       201 ~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg-~------~~~~~v~~GDV~~i--PaG~~h~i~N~g~~e  270 (539)
                      +-|.+|...|+...-||=|....++.|++|.-..+...-. .      .....+.+||+.+|  +.|.+|.|.|..+++
T Consensus        68 f~i~~i~W~pG~~tpiHdH~~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~~~  146 (192)
T d2gm6a1          68 FSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDR  146 (192)
T ss_dssp             CEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             EEEEEEecCCCCCCCCCCCCCceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCCCc
Confidence            5567778899999999944566778899999888777532 1      13567999999887  447899999975344

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.54  E-value=0.44  Score=45.84  Aligned_cols=42  Identities=17%  Similarity=0.383  Sum_probs=34.1

Q ss_pred             cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEE
Q 039441          219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLS  264 (539)
Q Consensus       219 ~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~  264 (539)
                      .++..|+.|++|+|+|+.    ...+..|++||.++|||++..|..
T Consensus       263 ~~~~~il~vi~G~~~i~~----~~~~~~l~~G~~~~ipa~~~~~~i  304 (315)
T d1qwra_         263 DESFLICSVIEGSGLLKY----EDKTCPLKKGDHFILPAQMPDFTI  304 (315)
T ss_dssp             CSSCEEEEEEEEEEEEEE----TTEEEEEETTCEEEECTTCCCEEE
T ss_pred             CCCcEEEEEEeCeEEEEE----CCEEEEEecCcEEEEECCCCCEEE
Confidence            356799999999998874    235688999999999999866544

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=87.08  E-value=1.9  Score=38.44  Aligned_cols=80  Identities=13%  Similarity=0.037  Sum_probs=56.2

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      .+.+..+...||....||=|+. ..++.|++|....++..-....        .         . --..-...|.+|++.
T Consensus        67 ~f~i~~i~W~pG~~tpiHdH~~-w~~~~vl~G~l~e~~y~~~~~~--------~---------~-~~~~~~~~l~~G~v~  127 (192)
T d2gm6a1          67 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSG--------R---------P-VLHGEPTRLEPGHVE  127 (192)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTS--------C---------E-EECSCCEEECTTCEE
T ss_pred             CEEEEEEecCCCCCCCCCCCCC-ceEEEEEcCeEEEEEeeeCCCC--------C---------c-ccccceEEecCCCEE
Confidence            3778889999999999999964 4777899999999887643211        0         0 001123468999997


Q ss_pred             Ee--CCCCeEEEEcC-CCCcEE
Q 039441          437 II--PPGHPIALVAS-PNEKLL  455 (539)
Q Consensus       437 vV--PaG~~h~i~n~-gne~l~  455 (539)
                      +|  +.|..|-+.|. +++...
T Consensus       128 ~~~~~~~~IH~v~N~~~~~~av  149 (192)
T d2gm6a1         128 AVSPTVGDIHRVHNAYDDRVSI  149 (192)
T ss_dssp             EEBTTTBCCEEEEESCSSSCEE
T ss_pred             EECCCCCceeEEecCCCCccEE
Confidence            77  44678999985 454433

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=85.87  E-value=1.4  Score=39.62  Aligned_cols=71  Identities=15%  Similarity=0.101  Sum_probs=54.1

Q ss_pred             eeCCCeeecccccCCCcEEEEE-eceEEEEEEeCCC------ceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441          207 EANPSTLVVPHHSDAETILVLL-KGKGVITLVSHER------RESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ  279 (539)
Q Consensus       207 ~l~P~~l~lPh~~dA~~~~yV~-~G~g~i~~v~pg~------~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d  279 (539)
                      ...+|.|+=.||.....+++|+ .|.....+|+--.      ...+.|..+..++||+|.+|=.+-..+  ...|+.+.+
T Consensus        63 ~S~kgvlRGlH~q~~~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d--~t~i~Y~~s  140 (194)
T d1nxma_          63 FSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSD--FVAYSYLVN  140 (194)
T ss_dssp             EEETTBEEEEEECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSS--EEEEEEEES
T ss_pred             eeeeeEEEEEEeccchhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeecc--ceeEEEecC
Confidence            3478999999988888888886 5888888887542      135778999999999999999999974  233444443

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=84.44  E-value=2.6  Score=33.68  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441          357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF  436 (539)
Q Consensus       357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~  436 (539)
                      +.......|.||-   -++++.+.|++=|+.|...|.+-....                           -..+.+|+-|
T Consensus        21 g~~kTlGVm~pGe---Y~F~T~~~E~MeivsG~l~V~lpg~~e---------------------------w~~~~~G~sF   70 (93)
T d2oyza1          21 GQDVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKRVGEAD---------------------------WTTYSSGESF   70 (93)
T ss_dssp             TEEEEEEEECSEE---EEEEESSCEEEEEEESEEEEEETTCSS---------------------------CEEEETTCEE
T ss_pred             CCeeEEEEEeccE---EEEcCCCCEEEEEEeeEEEEECCCCcc---------------------------cEEeCCCCeE
Confidence            4556667777885   489999999999999998887755431                           1357999999


Q ss_pred             EeCCCCeEEEEcCCCCcEEEEEE
Q 039441          437 IIPPGHPIALVASPNEKLLTVGF  459 (539)
Q Consensus       437 vVPaG~~h~i~n~gne~l~~v~F  459 (539)
                      -||++..+-+...  +...++|.
T Consensus        71 ~Vpans~F~ikv~--~~~~Y~C~   91 (93)
T d2oyza1          71 DVEGNSSFELQVK--DATAYLCE   91 (93)
T ss_dssp             EECSSEEEEEEES--SCEEEEEE
T ss_pred             EECCCCEEEEEEC--cceeeEEE
Confidence            9999999888774  55788874

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.25  E-value=7.4  Score=36.14  Aligned_cols=136  Identities=14%  Similarity=0.133  Sum_probs=82.7

Q ss_pred             cCCCceeecCc-cceeEecCCceEEEeec-cCcccccccCcceeeEEEeeeCCCeee-cccccCCCcEEEEEeceEEEEE
Q 039441          160 ENNPYYFHSQR-FRYRVRSDSGHMRVLQR-FSQKSHLLRGIDNYRLAILEANPSTLV-VPHHSDAETILVLLKGKGVITL  236 (539)
Q Consensus       160 ~~~py~f~~~~-f~~~v~se~G~i~vl~~-f~~~s~~l~gv~~~Rl~il~l~P~~l~-lPh~~dA~~~~yV~~G~g~i~~  236 (539)
                      ...|+|..-.. -.+.+..++..++++-. +....-.+.--....+.-+.|+|++-+ +|--.+...++||+.|.+.|+-
T Consensus       124 ~~~P~y~~~~~~diP~~~~~~~~~~vi~G~~~g~~~pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g  203 (288)
T d1j1la_         124 MVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGP  203 (288)
T ss_dssp             TSCCEEEEECGGGSCCCEETTEEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESC
T ss_pred             cccccccccccccCcccccccceEEEEeccccccccccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecC
Confidence            34576665332 34566777777776432 222221222223444555667998855 4444566679999999998862


Q ss_pred             EeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE-eccCCCCCCceeccccCccEEEcChhhhh
Q 039441          237 VSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL-LQPVNTPGQFRVQQRQQGTIKRASQEQLK  306 (539)
Q Consensus       237 v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l-~d~~n~pg~f~~~~q~~G~Ivrv~~eql~  306 (539)
                          ......+..++++++-+|-..-|.+.+ .++.+++++ ..|.+.|=      -.-|-+|--++++|.
T Consensus       204 ----~~~~~~l~~~~~~~l~~gd~~~i~~~~-~~~a~~LLl~G~Pi~EPv------~~~GPFVmnt~eeI~  263 (288)
T d1j1la_         204 ----DDAQQKIEPHHTAVLGEGDSVQVENKD-PKRSHFVLIAGEPLREPV------IQHGPFVMNTNEEIS  263 (288)
T ss_dssp             ----TTSCEEECTTEEEEECSCSEEEEECCS-SSCEEEEEEEECCCCSCC------EEETTEEESSHHHHH
T ss_pred             ----cccceeecCceEEEEcCCCeEEEEeCC-CCCCEEEEEECCcCCCCE------EeeCCcccCCHHHHH
Confidence                223456889999999999988888876 455665554 45555541      123556666666554

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.64  E-value=1.5  Score=41.71  Aligned_cols=59  Identities=19%  Similarity=0.322  Sum_probs=40.4

Q ss_pred             eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe
Q 039441          200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN  265 (539)
Q Consensus       200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N  265 (539)
                      .+.+-.+++... +.++ -.++..|++|+.|+++|+   .  .++..|++||.++|||.+..|..-
T Consensus       228 ~F~~~~~~~~~~-~~~~-~~~~~~il~~~~G~~~i~---~--~~~~~l~~G~s~~iPA~~~~~~i~  286 (299)
T d1zx5a1         228 NFGLEVVDVTGT-AEIK-TGGVMNILYAAEGYFILR---G--KETADLHRGYSCLVPASTDSFTVE  286 (299)
T ss_dssp             SEEEEEEEEEEE-EEEE-CCSBCEEEEEEESCEEEE---S--SSEEEECTTCEEEECTTCCEEEEE
T ss_pred             ceEEEEEEecCc-EEec-cCCceEEEEEeccEEEEe---C--CCEEEEcCCcEEEEecCCccEEEE
Confidence            344555554432 2222 235678999999999864   2  346889999999999998766553

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=83.33  E-value=2.9  Score=33.94  Aligned_cols=59  Identities=20%  Similarity=0.380  Sum_probs=45.6

Q ss_pred             eeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc-eeeecCCCcEEEeCCCCeEEEEecC
Q 039441          207 EANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR-ESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       207 ~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~-~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      +.++|.++.-.=-.++.|+||++|...+....+|.. ..+.+.+||++..++  .+++....
T Consensus        26 ~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~~--~~~v~A~~   85 (132)
T d1ft9a2          26 IHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS--GCLVEATE   85 (132)
T ss_dssp             EECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESCS--SCEEEESS
T ss_pred             EecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeeccccccccccccc--cccceecc
Confidence            348888888888899999999999999988776543 357789999987665  44555553

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=80.19  E-value=1.9  Score=34.50  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=44.4

Q ss_pred             eeeccc-c---cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441          212 TLVVPH-H---SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD  267 (539)
Q Consensus       212 ~l~lPh-~---~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g  267 (539)
                      |+.+|. |   .+++++.=|+.|...|.+  ||..+-..+..|+-+-|||++.|-|.-..
T Consensus        27 GVm~pGeY~F~T~~~E~MeivsG~l~V~l--pg~~ew~~~~~G~sF~Vpans~F~ikv~~   84 (93)
T d2oyza1          27 GVMLPGEYTFGTQAPERMTVVKGALVVKR--VGEADWTTYSSGESFDVEGNSSFELQVKD   84 (93)
T ss_dssp             EEECSEEEEEEESSCEEEEEEESEEEEEE--TTCSSCEEEETTCEEEECSSEEEEEEESS
T ss_pred             EEEeccEEEEcCCCCEEEEEEeeEEEEEC--CCCcccEEeCCCCeEEECCCCEEEEEECc
Confidence            445555 3   699999999999976655  88778889999999999999999887653