Citrus Sinensis ID: 039444

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHccEEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHcccccccccccHHHHHHHHHHcccEEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
gsieesklkssnfpiytpyvDEVKQVIEREGSFDILQLETFHVSWLEgfvendnegldkyargkHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK
Flexible Loop (DISEMBL)
gsieesklkssnfpiytpyVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLvssicgddaiaeEIYRRYEIKVTDEILEKGRGAFANLLISLVKK
Low Complexity Region (SEG)
GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK
Disordered region (IsUnstruct)
************FPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISL***
Disordered Region (DISOPRED)
GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEG*********DKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK
Disordered Region (DISEMBL)
********KSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK
Disordered Region (DISPRO)
GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFV*NDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q8H0D2	384	3,7-dimethylxanthine N-me	N/A	no	0.983	0.309	0.410	6e-18
Q8H0D3	384	Caffeine synthase 1 OS=Co	N/A	no	0.983	0.309	0.395	9e-18
A4GE70	384	3,7-dimethylxanthine N-me	N/A	no	0.983	0.309	0.395	1e-17
Q9AVK1	385	Probable caffeine synthas	N/A	no	0.983	0.309	0.395	2e-17
Q9AVL9	385	Probable caffeine synthas	N/A	no	0.983	0.309	0.395	3e-17
Q8H0G0	384	Theobromine synthase 2 OS	N/A	no	0.983	0.309	0.379	5e-17
A4GE69	372	7-methylxanthosine syntha	N/A	no	0.942	0.306	0.421	5e-17
Q84PP7	384	Monomethylxanthine methyl	N/A	no	0.983	0.309	0.379	5e-17
Q9AVK0	372	7-methylxanthosine syntha	N/A	no	0.942	0.306	0.421	6e-17
Q9AVJ9	378	Monomethylxanthine methyl	N/A	no	0.983	0.314	0.373	7e-15

>sp|Q8H0D2|DXMT1_COFAR 3,7-dimethylxanthine N-methyltransferase OS=Coffea arabica GN=DXMT1 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIY P  +EVK ++E EGSF+IL LETF V +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKCIVEEEGSFEILYLETFKVPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +V+S  G +AI  ++  R   K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIFEPIVASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of paraxanthine to caffeine. Can also convert 7-methylxanthine to theobromine and theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.
Coffea arabica (taxid: 13443)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6EC: 0

>sp|Q8H0D3|CCS1_COFAR Caffeine synthase 1 OS=Coffea arabica GN=CCS1 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIY P  +EVK+++E EGSF+IL LETF+  +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFYAPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +++S  G +AI  ++  R   K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|A4GE70|DXMT1_COFCA 3,7-dimethylxanthine N-methyltransferase OS=Coffea canephora GN=DXMT1 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIY P  +EVK+++E EGSF+IL LETF+  +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +++S  G +AI  ++  R   K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine to theobromine and of theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9AVK1|CS3_COFAR Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDN------ 54
           G +EE KL S N PIY   V+E+K ++E EGSF+IL LETF + +  GF  +D+      
Sbjct: 253 GHLEEEKLDSFNVPIYAASVEELKCIVEEEGSFEILYLETFKLRYDAGFSIDDDCQVRSH 312

Query: 55  --EGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
             E  D++AR  HV  L+R+V E ++++  G +AI  +I+ R+      +++  G+G + 
Sbjct: 313 SPEYSDEHARAAHVASLLRSVYEPILANHFG-EAIIPDIFHRFATNAA-KVIRLGKGFYN 370

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 371 NLIISLAKK 379

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q9AVL9|CS4_COFAR Probable caffeine synthase 4 OS=Coffea arabica GN=CS4 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGL--- 57
           G + E KL S N PIYT  V+EVK ++E EGSF+IL L+TF + +  GF  +D+  +   
Sbjct: 253 GRLGEEKLDSFNVPIYTASVEEVKCMVEEEGSFEILYLQTFKLRYDAGFSIDDDCQVRSH 312

Query: 58  -----DKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  L+R+V E +++S  G +AI  +I+ R+      +++  G+G + 
Sbjct: 313 SPVYSDEHARAAHVASLIRSVYEPILASHFG-EAIIPDIFHRFATNAA-KVIRLGKGFYN 370

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 371 NLIISLAKK 379

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q8H0G0|CTS2_COFAR Theobromine synthase 2 OS=Coffea arabica GN=CTS2 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGL--- 57
           G +EE KL S N P +TP  +EVK ++E EGSF+IL LETF   +  GF  +D+  +   
Sbjct: 252 GHLEEEKLASFNLPFFTPSAEEVKCIVEEEGSFEILYLETFKAHYDAGFSIDDDYPVRSH 311

Query: 58  -----DKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++ + ++V  L+R+V E +++S  G +AI  +++ R   K   ++L  G+G + 
Sbjct: 312 FQVYGDEHIKAEYVASLIRSVYEPILASHFG-EAIMPDLFHRLA-KHAAKVLHLGKGCYN 369

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 370 NLIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine. Does not have 1-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

>sp|A4GE69|XMT1_COFCA 7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 76/121 (62%), Gaps = 7/121 (5%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+IL LETF V +  GF  +     D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307

Query: 61  ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
            + ++V   VRAV E +++S  G +AI  +I+ R+  K   ++L  G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365

Query: 121 K 121
           K
Sbjct: 366 K 366

Involved in the biosynthesis of caffeine. Specific for xanthosine. Cannot use xanthosine 5'-monophosphate (XMP) as substrate. Directly produces 7-methylxanthine, and therefore the methyl transfer and nucleoside cleavage may be coupled. Catalyzes the 7-N-methylation of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

>sp|Q84PP7|MXMT2_COFAR Monomethylxanthine methyltransferase 2 OS=Coffea arabica GN=MXMT2 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGL--- 57
           G +EE KL S N P +TP  +EVK ++E EGSF+IL LETF   +  GF  +D+  +   
Sbjct: 252 GHLEEEKLASFNLPFFTPSAEEVKCIVEEEGSFEILYLETFKAHYDAGFSIDDDYPVRSH 311

Query: 58  -----DKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++ + ++V  L+R+V E +++S  G +AI  +++ R   K   ++L  G+G + 
Sbjct: 312 FQVYGDEHIKAEYVASLIRSVYEPILASHFG-EAIMPDLFHRLA-KHAAKVLHLGKGCYN 369

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 370 NLIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and with a lower activity of paraxanthine to caffeine.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

>sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 76/121 (62%), Gaps = 7/121 (5%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+IL LETF V +  GF  +     D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307

Query: 61  ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
            + ++V   VRAV E +++S  G +AI  +I+ R+  K   ++L  G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365

Query: 121 K 121
           K
Sbjct: 366 K 366

Involved in the biosynthesis of caffeine. Specific for xanthosine and could not use xanthosine 5'-monophosphate (XMP) as substrate. Catalyzes the 7-N-methylation activity of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

>sp|Q9AVJ9|MXMT1_COFAR Monomethylxanthine methyltransferase 1 OS=Coffea arabica GN=MXMT1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 4/123 (3%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P +TP  +EVK ++E EGS +IL LETF   +   F  +D+  +  +
Sbjct: 252 GLLEEEKLDSFNIPFFTPSAEEVKCIVEEEGSCEILYLETFKAHYDAAFSIDDDYPVRSH 311

Query: 61  --ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISL 118
              + ++V  L+R+V E +++S  G +AI  +++ R   K   ++L  G+G + NL+ISL
Sbjct: 312 EQIKAEYVASLIRSVYEPILASHFG-EAIMPDLFHRLA-KHAAKVLHMGKGCYNNLIISL 369

Query: 119 VKK 121
            KK
Sbjct: 370 AKK 372

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of paraxanthine to caffeine. Has a 5-fold preference for 7mX.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
296085033	549	unnamed protein product [Vitis vinifera]	0.975	0.214	0.404	2e-18
225447527	383	PREDICTED: probable caffeine synthase 4-	0.975	0.308	0.404	5e-18
30023550	384	3,7-dimethylxanthine N-methyltransferase	0.983	0.309	0.418	8e-17
296085034	226	unnamed protein product [Vitis vinifera]	0.975	0.522	0.398	2e-16
75151760	384	RecName: Full=3,7-dimethylxanthine N-met	0.983	0.309	0.410	3e-16
359745165	384	N-methyltransferase [Coffea arabica]	0.983	0.309	0.395	4e-16
75151761	384	RecName: Full=Caffeine synthase 1 gi|264	0.983	0.309	0.395	4e-16
334305745	384	RecName: Full=3,7-dimethylxanthine N-met	0.983	0.309	0.395	4e-16
20271030	386	N-methyltransferase [Coffea liberica]	0.983	0.308	0.410	6e-16
75168231	385	RecName: Full=Probable caffeine synthase	0.983	0.309	0.395	8e-16

>gi|296085033|emb|CBI28448.3| unnamed protein product [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 80/121 (66%), Gaps = 3/121 (2%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVE-NDNEGLDK 59
           GSI+ES+L S N P++ P  ++V+ VI+RE SF +L+LETF + W +   + N ++  DK
Sbjct: 254 GSIQESELDSLNIPLFMPSPEQVRSVIQRESSFTLLRLETFKLDWADNIDDGNKDQVFDK 313

Query: 60  YARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLV 119
           Y R K+V   +RAV E +++S  G  A+ + ++ R+ +KV + I E G+G + NL+ISL 
Sbjct: 314 YGRAKYVVMYIRAVGEPILASHFG-GAVMDSLFHRFFMKVVENI-ETGKGIYTNLVISLS 371

Query: 120 K 120
           +
Sbjct: 372 R 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447527|ref|XP_002267308.1| PREDICTED: probable caffeine synthase 4-like [Vitis vinifera]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 80/121 (66%), Gaps = 3/121 (2%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVE-NDNEGLDK 59
           GSI+ES+L S N P++ P  ++V+ VI+RE SF +L+LETF + W +   + N ++  DK
Sbjct: 254 GSIQESELDSLNIPLFMPSPEQVRSVIQRESSFTLLRLETFKLDWADNIDDGNKDQVFDK 313

Query: 60  YARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLV 119
           Y R K+V   +RAV E +++S  G  A+ + ++ R+ +KV + I E G+G + NL+ISL 
Sbjct: 314 YGRAKYVVMYIRAVGEPILASHFG-GAVMDSLFHRFFMKVVENI-ETGKGIYTNLVISLS 371

Query: 120 K 120
           +
Sbjct: 372 R 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30023550|dbj|BAC75663.1| 3,7-dimethylxanthine N-methyltransferase [Coffea arabica]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 80/129 (62%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIY P  +EVK ++E EGSF+IL LETF V +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKCIVEEEGSFEILYLETFKVPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +V+S  G +AI  ++  R   K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIFEPIVASHFG-EAIMPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +L+ISL KK
Sbjct: 370 SLIISLAKK 378

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085034|emb|CBI28449.3| unnamed protein product [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 5/123 (4%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGL--D 58
           G ++ESKL   N P+Y P  +EV+ V+ REGSF++L+LETF + W +  +++ N+ L  D
Sbjct: 102 GFVQESKLDRCNIPLYMPTAEEVRDVVRREGSFNLLRLETFRLDW-DAHIDDGNKDLVFD 160

Query: 59  KYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISL 118
           ++ R K+V   +RAV E L  S  G D I ++++ R+ +KV D+I E G+    N  +SL
Sbjct: 161 RFERAKYVVMGMRAVAEPLRISHFG-DGIMDDLFHRFFMKVADDI-EAGKDICINHTVSL 218

Query: 119 VKK 121
            K+
Sbjct: 219 TKR 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75151760|sp|Q8H0D2.1|DXMT1_COFAR RecName: Full=3,7-dimethylxanthine N-methyltransferase; Short=CaDXMT1; AltName: Full=Caffeine synthase 7; Short=CtCS7 gi|26453395|dbj|BAC43761.1| tentative caffeine synthase 7 [Coffea arabica]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIY P  +EVK ++E EGSF+IL LETF V +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKCIVEEEGSFEILYLETFKVPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +V+S  G +AI  ++  R   K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIFEPIVASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359745165|gb|AEV57593.1| N-methyltransferase [Coffea arabica]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIY P  +EVK+++E EGSF+IL LETF+  +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFYAPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +++S  G +AI  ++  R   K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75151761|sp|Q8H0D3.1|CCS1_COFAR RecName: Full=Caffeine synthase 1 gi|26453393|dbj|BAC43760.1| caffeine synthase 1 [Coffea arabica]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIY P  +EVK+++E EGSF+IL LETF+  +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFYAPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +++S  G +AI  ++  R   K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334305745|sp|A4GE70.1|DXMT1_COFCA RecName: Full=3,7-dimethylxanthine N-methyltransferase; Short=DXMT gi|146386465|pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase gi|90110982|gb|ABD90686.1| 3,7-dimethylxanthine methyltransferase [Coffea canephora]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIY P  +EVK+++E EGSF+IL LETF+  +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +++S  G +AI  ++  R   K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20271030|gb|AAM18507.1|AF494417_1 N-methyltransferase [Coffea liberica]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGL--- 57
           G +EE KL S N P+Y P  +EVK ++E EGSF+IL LETF V +  GF  +D+  L   
Sbjct: 252 GHLEEEKLDSFNLPVYIPSTEEVKCIVEEEGSFEILYLETFKVLYDAGFSIDDDYPLRSH 311

Query: 58  -----DKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++ + ++V   VRAV E +++S  G +AI  +I+ R+  K   ++L  G+G + 
Sbjct: 312 VQVYSDEHIKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYN 369

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 370 NLIISLAKK 378

Source: Coffea liberica

Species: Coffea liberica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75168231|sp|Q9AVK1.1|CS3_COFAR RecName: Full=Probable caffeine synthase 3; Short=CtCS3; AltName: Full=Methyltransferase-like 2; Short=CaMTL2 gi|13365749|dbj|BAB39214.1| theobromine synthase [Coffea arabica]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDN------ 54
           G +EE KL S N PIY   V+E+K ++E EGSF+IL LETF + +  GF  +D+      
Sbjct: 253 GHLEEEKLDSFNVPIYAASVEELKCIVEEEGSFEILYLETFKLRYDAGFSIDDDCQVRSH 312

Query: 55  --EGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
             E  D++AR  HV  L+R+V E ++++  G +AI  +I+ R+      +++  G+G + 
Sbjct: 313 SPEYSDEHARAAHVASLLRSVYEPILANHFG-EAIIPDIFHRFATNAA-KVIRLGKGFYN 370

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 371 NLIISLAKK 379

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2013149	389	JMT "jasmonic acid carboxyl me	0.975	0.303	0.325	3.4e-12
TAIR|locus:2080747	379	BSMT1 [Arabidopsis thaliana (t	0.933	0.298	0.330	2.3e-10
TAIR|locus:2144466	368	AT5G38020 [Arabidopsis thalian	0.991	0.326	0.294	4.5e-09
TAIR|locus:2095572	368	AT3G21950 [Arabidopsis thalian	0.991	0.326	0.317	5.8e-09
TAIR|locus:2053458	359	AT2G14060 [Arabidopsis thalian	0.768	0.259	0.346	2.5e-08
TAIR|locus:2179929	415	NAMT1 [Arabidopsis thaliana (t	0.950	0.277	0.305	2.5e-08
TAIR|locus:2115400	371	AT4G36470 [Arabidopsis thalian	0.818	0.266	0.330	4.4e-08
TAIR|locus:2179969	385	AT5G04380 "AT5G04380" [Arabido	0.975	0.306	0.314	7.7e-08
TAIR|locus:2154845	354	AT5G66430 [Arabidopsis thalian	0.966	0.330	0.290	6.3e-07
TAIR|locus:2161008	387	GAMT2 "AT5G56300" [Arabidopsis	0.801	0.250	0.297	6.7e-05

TAIR|locus:2013149 JMT "jasmonic acid carboxyl methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 41/126 (32%), Positives = 69/126 (54%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGL--- 57
             G IEE K+ + N P Y    +E+K VIE+EGSF I +LE   + W  G +  ++  L   
Sbjct:   264 GIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEISPIDWEGGSISEESYDLVIR 323

Query:    58 ---DKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANL 114
                +  A G+ V+  +RAVVE ++    G++ + +E++ RY  K+  E        +A +
Sbjct:   324 SKPEALASGRRVSNTIRAVVEPMLEPTFGEN-VMDELFERYA-KIVGEYFYVSSPRYAIV 381

Query:   115 LISLVK 120
             ++SLV+
Sbjct:   382 ILSLVR 387

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009694 "jasmonic acid metabolic process" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0030795 "jasmonate O-methyltransferase activity" evidence=IMP;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2080747 BSMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 40/121 (33%), Positives = 69/121 (57%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
             G + ESKL + N P Y P V E+K+VI++EGSF+I +LE+ H   L  + E D+     +
Sbjct:   267 GLVSESKLDAFNMPFYDPNVQELKEVIQKEGSFEINELES-HGFDLGHYYEEDD-----F 320

Query:    61 ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
               G++    +RAV E ++ +  G++ I + ++ +Y   VT     + +    +L++SL K
Sbjct:   321 EAGRNEANGIRAVSEPMLIAHFGEEII-DTLFDKYAYHVTQHANCRNKTT-VSLVVSLTK 378

Query:   121 K 121
             K
Sbjct:   379 K 379

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006952 "defense response" evidence=IEP

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0051707 "response to other organism" evidence=IEP

GO:0052624 "2-phytyl-1,4-naphthoquinone methyltransferase activity" evidence=IDA

GO:0080150 "S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity" evidence=IDA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2144466 AT5G38020 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 38/129 (29%), Positives = 65/129 (50%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFH---VSWLEGFVE--NDNE 55
             G ++ES + S N P Y P   EV++VIE EGSF I   ET      S+  G  E  +D++
Sbjct:   241 GIVKESDVDSFNLPFYNPDESEVREVIESEGSFKISNFETIFGLLFSYKTGRTEVKDDDD 300

Query:    56 GLDKYARGKHVTR---LVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
              LD+  R + + +   ++R++ E ++ +  GD AI + ++ RY   + +           
Sbjct:   301 NLDQSCRFEVIRKRASIIRSITEPMLGAHFGD-AIMDRLFERYTYHLAERYDTLRNKPTV 359

Query:   113 NLLISLVKK 121
                +SL +K
Sbjct:   360 QFFVSLTRK 368

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2095572 AT3G21950 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 41/129 (31%), Positives = 68/129 (52%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFH---VSWLEGF--VENDNE 55
             G ++ES L+S N P Y+P   EVK+VIE EGSF+I   ET      S+  G   V++D++
Sbjct:   241 GVVKESDLESFNLPYYSPDESEVKEVIENEGSFEIKNFETIFGLLFSYKTGHSEVKDDDD 300

Query:    56 GLDKYARGKHV-TR--LVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
              +D   R + V TR  + R+++E ++ +  G+ AI + ++ +Y                 
Sbjct:   301 DVDHSRRFEVVKTRANMTRSIIEPMLVAHFGE-AIIDRLFDKYIYHACQRYDTLRNKPTV 359

Query:   113 NLLISLVKK 121
             N  +SL +K
Sbjct:   360 NFFVSLTRK 368

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2053458 AT2G14060 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 34/98 (34%), Positives = 56/98 (57%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETF-HVS--WLEGFVENDNEGL 57
             G + +S +KS N P Y P  +EV++ I +EGSF+I ++E F HV    ++   E++ + L
Sbjct:   236 GFVNDSMVKSFNMPFYNPNEEEVREFILKEGSFEITKIEKFDHVVPYKIDREEEDEEQSL 295

Query:    58 DKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRY 95
                A  KH +   R + E L+ +  GD AI E ++ +Y
Sbjct:   296 QLEAGIKHAS-WARCITEPLLVAHFGD-AIIEPVFNKY 331

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2179929 NAMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 37/121 (30%), Positives = 64/121 (52%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
             G +  SK+ S   P Y P   E+K+++++EGSF+I  LET H   L G    D     K 
Sbjct:   295 GLVSASKVDSFYLPFYDPNEKEIKEMVQKEGSFEIRDLET-HGYDL-GHCNQDESKRSK- 351

Query:    61 ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
               G++    +RAV E L+++  GD AI   ++ ++   V+  +  + +    ++++SL K
Sbjct:   352 -SGQNEANYIRAVSEPLLAAHFGD-AIINILFNKFACHVSQHVSCRNKTT-VSIVVSLTK 408

Query:   121 K 121
             K
Sbjct:   409 K 409

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

TAIR|locus:2115400 AT4G36470 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 35/106 (33%), Positives = 57/106 (53%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
             G  EE KL S +   Y P  DE++  +++EGSF++ +LE   V   +G  E D       
Sbjct:   258 GETEEEKLDSYDMHFYAPSADEIEGEVDKEGSFELERLEMLEVKKDKGNTEGD------I 311

Query:    61 ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEK 106
             + GK V + VRAV ES++    G+  I ++++  Y   V DE+ ++
Sbjct:   312 SYGKAVAKTVRAVQESMLVQHFGEK-ILDKLFDTYCRMVDDELAKE 356

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IMP

TAIR|locus:2179969 AT5G04380 "AT5G04380" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 38/121 (31%), Positives = 61/121 (50%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
             G +  SK+ S   P Y P  +EVK++I  EGSF I  LE  H   L    E  +    K 
Sbjct:   268 GLLSASKVYSFKMPFYDPNEEEVKEIIRNEGSFQINDLE-MHEFDLGHSKEKCSLQSHKA 326

Query:    61 ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
               G+     +RAV E+++ +  GDD I + ++ +Y   V+     + + +   L++SLV+
Sbjct:   327 KAGQKEASCIRAVTETMLVAHFGDDII-DALFHKYAHHVSQHASCRVKTS-VTLIVSLVR 384

Query:   121 K 121
             K
Sbjct:   385 K 385

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2154845 AT5G66430 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 36/124 (29%), Positives = 65/124 (52%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGL--D 58
             G +  SK+ S N P Y P  +EV ++I  EGSF+I  LE  H   L G   +D + +   
Sbjct:   235 GLVSASKVDSFNIPFYDPSKEEVMEMIRNEGSFEINDLE-IHGFEL-GLSNHDEDYMLHS 292

Query:    59 KYAR-GKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLIS 117
             + ++ G+     +RAV ES++ +  G D I + +++++   V+       +     L++S
Sbjct:   293 QISKAGQREANCIRAVSESMLVADFGVD-IMDTLFKKFAYHVSQHASCTNKTT-VTLVVS 350

Query:   118 LVKK 121
             L++K
Sbjct:   351 LIRK 354

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2161008 GAMT2 "AT5G56300" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 30/101 (29%), Positives = 51/101 (50%)

Query:     1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGL-DK 59
             G I+E      N P Y    +EV   I+R G F I +++   +  +E   E   E   D 
Sbjct:   268 GLIDEETRDGFNIPAYMRSPEEVTAGIDRCGGFKIGKMDFLKI--VEYSDEKQEEWKKDP 325

Query:    60 YARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVT 100
              + G+  T LV+A +  +V +  G D ++ E+++RYE +V+
Sbjct:   326 VSYGRARTNLVQAAIRPMVDAYLGPD-LSHELFKRYENRVS 365

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0010341 "gibberellin carboxyl-O-methyltransferase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	1e-25
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	5e-06

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score = 97.7 bits (244), Expect = 1e-25
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 6/124 (4%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETF-HVSWLEGFVENDNEGLDK 59
           G IEE KL S N PIY P  +EVK++IE+EGSF I +LE   H +       ++++  DK
Sbjct: 211 GLIEEEKLDSFNIPIYAPSPEEVKEIIEKEGSFTIERLEIIKHPNGE--VPWDESDSEDK 268

Query: 60  YARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTD--EILEKGRGAFANLLIS 117
              G+ V   VRAVVE ++ +  G+D + ++++ RY  K+++      +      N+++S
Sbjct: 269 VEDGRFVASSVRAVVEPMLVAHFGEDIM-DKLFDRYAKKLSEHLSKELQNAKKTINVVVS 327

Query: 118 LVKK 121
           L +K
Sbjct: 328 LSRK 331

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
           G +   K  S N P+Y P + + K+V+E  GSF I +LE F      G     NE  D  
Sbjct: 270 GLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFK----GGSPLVVNEPDDAA 325

Query: 61  ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTD---EILEK 106
             G+ +    R+V   LV +  G++ ++ E++ R E + T    E+LEK
Sbjct: 326 EVGRAMANSCRSVAGVLVDAHIGEE-LSNELFLRVERRATSHAKELLEK 373

Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
PLN02668	386	indole-3-acetate carboxyl methyltransferase	100.0
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	100.0

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=100.00  E-value=1.1e-35  Score=242.67  Aligned_cols=114  Identities=29%  Similarity=0.437  Sum_probs=104.6

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHh
Q 039444            1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSS   80 (121)
Q Consensus         1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~   80 (121)
                      |+|++||+||||+|+|+||++||+++|+++|||+|++||+++..|++  .++.  +.|....|+++|+++||++||||++
T Consensus       270 GlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~--~~~~--~~d~~~~g~~~a~~~RA~~E~ll~~  345 (386)
T PLN02668        270 GLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPL--VVNE--PDDAAEVGRAMANSCRSVAGVLVDA  345 (386)
T ss_pred             CCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcc--cccC--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999986  3321  2355678999999999999999999


Q ss_pred             hhCChhHHHHHHHHHHHHHhhhHHHh--cCCceeEEEEEEee
Q 039444           81 ICGDDAIAEEIYRRYEIKVTDEILEK--GRGAFANLLISLVK  120 (121)
Q Consensus        81 HFG~~~I~DeLF~r~~~~v~~~~~~~--~~~~~~~~~vsL~r  120 (121)
                      ||| ++|||+||+||+++++++ ++.  ++.+++++++||+-
T Consensus       346 HFG-~~i~D~lF~r~~~~v~~~-~~~~~~~~~~~~~~~sL~~  385 (386)
T PLN02668        346 HIG-EELSNELFLRVERRATSH-AKELLEKLQFFHIVASLSF  385 (386)
T ss_pred             HcC-HHHHHHHHHHHHHHHHHH-HHhhcccCceEEEEEEEec
Confidence            999 999999999999999999 888  88899999999974

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=100.00  E-value=2.5e-35  Score=236.79  Aligned_cols=118  Identities=38%  Similarity=0.653  Sum_probs=96.3

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHh
Q 039444            1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSS   80 (121)
Q Consensus         1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~   80 (121)
                      |+|++||+|+||+|+|+||++||+++|+++|||+|++||+++..|... ..+.....|...+|+.+|+++||++||||++
T Consensus       214 GlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~  292 (334)
T PF03492_consen  214 GLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFEQPWWSV-PDDESWKEDAKEYARNVANYIRAVFEPLLKA  292 (334)
T ss_dssp             TSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEEEETCCT-CTTT-STTTHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEeeccccc-chhhhcccchhhhHHHHHHhHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999665431 1111123456789999999999999999999


Q ss_pred             hhCChhHHHHHHHHHHHHHhhhHHHhcC---CceeEEEEEEeeC
Q 039444           81 ICGDDAIAEEIYRRYEIKVTDEILEKGR---GAFANLLISLVKK  121 (121)
Q Consensus        81 HFG~~~I~DeLF~r~~~~v~~~~~~~~~---~~~~~~~vsL~rk  121 (121)
                      ||| ++|||+||+||+++++++ ++..+   .+++++++||+||
T Consensus       293 hfG-~ei~D~LF~r~~~~v~~~-~~~~~~~~~~~~~i~~~L~Rk  334 (334)
T PF03492_consen  293 HFG-EEIMDELFERYAKKVAEH-LEKEKSRNMKFVNIVVSLTRK  334 (334)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHH-HHHTHTT-BEEEEEEEEEEE-
T ss_pred             HhC-hHHHHHHHHHHHHHHHHH-HHHhhccCCCcEEEEEEEeeC
Confidence            999 999999999999999999 77655   8899999999998

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		8e-19
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		4e-18
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		2e-11

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 10/129 (7%)
Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIY P  +EVK+++E EGSF+IL LETF+  +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSH 311
Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +++S  G +AI  ++  R   K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369
Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 76/121 (62%), Gaps = 7/121 (5%)
Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+IL LETF V +  GF  +     D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307
Query: 61  ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
            + ++V   VRAV E +++S  G +AI  +I+ R+  K   ++L  G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365
Query: 121 K 121
           K
Sbjct: 366 K 366

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
           G IEE K+   N P YTP   EV+  I +EGSF I  +E   + W     + D  G    
Sbjct: 240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGG-SVE 298
Query: 61  ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
             G +V R +RAV E L+    G +AI E+++ RY++ +  E + K +  F N+++SL++
Sbjct: 299 EEGYNVARCMRAVAEPLLLDHFG-EAIIEDVFHRYKLLII-ERMSKEKTKFINVIVSLIR 356
Query: 121 K 121
           K
Sbjct: 357 K 357

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	1e-27
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	6e-27
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	4e-24

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score =  102 bits (256), Expect = 1e-27
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
           G IEE K+   N P YTP   EV+  I +EGSF I  +E   + W     ++ + G    
Sbjct: 240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW-SSCTKDGDGGGSVE 298

Query: 61  ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
             G +V R +RAV E L+    G+  I E+++ RY++ + +  + K +  F N+++SL++
Sbjct: 299 EEGYNVARCMRAVAEPLLLDHFGEA-IIEDVFHRYKLLIIER-MSKEKTKFINVIVSLIR 356

Query: 121 K 121
           K
Sbjct: 357 K 357

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score =  101 bits (252), Expect = 6e-27
 Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 10/129 (7%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEG---- 56
           G +EE KL S N PIY P  +EVK+++E EGSF+IL LETF+  +  GF  +D+      
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
                D++AR  HV  +VR++ E +++S  G+  I  ++  R         L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFGEA-ILPDLSHRIAKNAAKV-LRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score = 93.7 bits (232), Expect = 4e-24
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
           G +   K    N P+Y P + + K+V++  GSF I +L  +         E D    D  
Sbjct: 258 GLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPD----DAS 313

Query: 61  ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGA-FANLLISLV 119
             G+      R+V   LV +  G++ ++ +++ R E + T    +      F +++ SL 
Sbjct: 314 EVGRAFASSCRSVAGVLVEAHIGEE-LSNKLFSRVESRATSHAKDVLVNLQFFHIVASLS 372

Query: 120 K 120
            
Sbjct: 373 F 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	99.97
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.97
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.96
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	94.44
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	88.22
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	86.8
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	84.45

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=99.97  E-value=2e-31  Score=215.03  Aligned_cols=117  Identities=36%  Similarity=0.616  Sum_probs=106.1

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCcc-ccchhhhHHHHHHHHHHHHHHHHH
Q 039444            1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNE-GLDKYARGKHVTRLVRAVVESLVS   79 (121)
Q Consensus         1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~iRAv~Epll~   79 (121)
                      |+|++||+|+||+|+|+||++|++++|+++|+|+|+++|+++..|++  .+++.+ ..+....|+.+|+++||++||||.
T Consensus       240 Gli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~--~~~~~d~~~~~~~~g~~~a~~~Ra~~e~ll~  317 (359)
T 1m6e_X          240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSS--CTKDGDGGGSVEEEGYNVARCMRAVAEPLLL  317 (359)
T ss_dssp             TCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTC--CSSCTTCCSSTTTTTTHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeeccCc--ccchhhhhhhhhHhHhHhhhhhhhhcchhhH
Confidence            89999999999999999999999999999999999999999999987  333100 113357899999999999999999


Q ss_pred             hhhCChhHHHHHHHHHHHHHhhhHHHhcCCceeEEEEEEeeC
Q 039444           80 SICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK  121 (121)
Q Consensus        80 ~HFG~~~I~DeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk  121 (121)
                      +||| ++|||+||+||+++++++ ++.++.++++++++|+||
T Consensus       318 ~hfG-~~i~d~lf~ry~~~~~~~-~~~~~~~~~~~~~~L~k~  357 (359)
T 1m6e_X          318 DHFG-EAIIEDVFHRYKLLIIER-MSKEKTKFINVIVSLIRK  357 (359)
T ss_dssp             HHHC-HHHHHHHHHHHHHHHHHH-HHSSCCEEEEEEEEEEBC
T ss_pred             Hhcc-HHHHHHHHHHHHHHHHHH-HhhCCCceEEEEEEEEeC
Confidence            9999 999999999999999999 898899999999999997

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.97  E-value=2.9e-31  Score=215.67  Aligned_cols=117  Identities=40%  Similarity=0.678  Sum_probs=105.2

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCcccc---CCCcc--c-c----chhhhHHHHHHHH
Q 039444            1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFV---ENDNE--G-L----DKYARGKHVTRLV   70 (121)
Q Consensus         1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~---~~~~~--~-~----~~~~~~~~~a~~i   70 (121)
                      |+|+++|+|+||+|+|+||++|++++|+++|+|+|+++|+++..|++  .   +++.+  . .    |....|+.+|+++
T Consensus       252 Gli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~g~~~a~~i  329 (384)
T 2efj_A          252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDA--GFSIDDDYQGRSHSPVSCDEHARAAHVASVV  329 (384)
T ss_dssp             TSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEETTT--TCCC---------CCSHHHHHHHHHHHHHHH
T ss_pred             CCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecccc--cccccccccccccccccchHhHhHHHhhhhh
Confidence            89999999999999999999999999999999999999999999987  4   32110  0 1    3457899999999


Q ss_pred             HHHHHHHHHhhhCChhHHHHHHHHHHHHHhhhHHHhcCCceeEEEEEEeeC
Q 039444           71 RAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK  121 (121)
Q Consensus        71 RAv~Epll~~HFG~~~I~DeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk  121 (121)
                      ||++||+|.+||| ++|||+||+||+++++++ ++.++.++++++++|+||
T Consensus       330 Ra~~epll~~hfG-~~i~d~lF~ry~~~~~~~-~~~~~~~~~~~~~~L~k~  378 (384)
T 2efj_A          330 RSIYEPILASHFG-EAILPDLSHRIAKNAAKV-LRSGKGFYDSVIISLAKK  378 (384)
T ss_dssp             HHHHHHHHHHHHC-STTHHHHHHHHHHHHHHH-HHHTCCEEEEEEEEEEEC
T ss_pred             HHhhhhhhHHhcc-HHHHHHHHHHHHHHHHHH-HhhCCCceEEEEEEEEEc
Confidence            9999999999999 999999999999999999 998999999999999997

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.96  E-value=4.2e-29  Score=202.25  Aligned_cols=113  Identities=23%  Similarity=0.349  Sum_probs=102.1

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHh
Q 039444            1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSS   80 (121)
Q Consensus         1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~   80 (121)
                      |+|+++++|+||+|+|+||++|++++|+++|+|+|+++|+++.+|++  .++.  ..+....|+.+|+++||++||||.+
T Consensus       258 G~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~--~~~~--~~~~~~~g~~~a~~~Ra~~e~ll~~  333 (374)
T 3b5i_A          258 GLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPL--VVNE--PDDASEVGRAFASSCRSVAGVLVEA  333 (374)
T ss_dssp             SSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCC--CCSS--TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCc--cccc--cchhHHHHHHHHHHHHHhccchhHh
Confidence            88999999999999999999999999999999999999999999987  3321  2344678999999999999999999


Q ss_pred             hhCChhHHHHHHHHHHHHHhhhHHH--hcCCc--eeEEEEEEe
Q 039444           81 ICGDDAIAEEIYRRYEIKVTDEILE--KGRGA--FANLLISLV  119 (121)
Q Consensus        81 HFG~~~I~DeLF~r~~~~v~~~~~~--~~~~~--~~~~~vsL~  119 (121)
                      ||| ++|||+||+||+++++++ ++  .++++  ++++++||+
T Consensus       334 hfg-~~i~d~lf~ry~~~~~~~-~~~~~~~~~~~~~~~~~~l~  374 (374)
T 3b5i_A          334 HIG-EELSNKLFSRVESRATSH-AKDVLVNLQFFHIVASLSFT  374 (374)
T ss_dssp             TSC-HHHHHHHHHHHHHHHHHT-CHHHHTTCCCEEEEEEEEEC
T ss_pred             hcc-HHHHHHHHHHHHHHHHHh-HHHhhhccccceEEEEEEeC
Confidence            999 999999999999999999 76  66777  899999985

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=94.44  E-value=0.54  Score=34.54  Aligned_cols=78  Identities=15%  Similarity=0.249  Sum_probs=53.3

Q ss_pred             cccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHH
Q 039444           10 SSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAE   89 (121)
Q Consensus        10 SFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~D   89 (121)
                      .+.-|.+.++.+++++++++.| |++..++.+...+..   .         .+...+..++++...+++. ..+ .+-.+
T Consensus       180 ~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~---~---------~~~~~~~~~l~~~~~~~~~-~~~-~~~~~  244 (279)
T 3ccf_A          180 QALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPTTL---A---------EGEFGMANWIQMFASAFLV-GLT-PDQQV  244 (279)
T ss_dssp             GGGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCEEC---S---------SGGGHHHHHHHHHCHHHHT-TCC-HHHHH
T ss_pred             cCcCceeCCCHHHHHHHHHHcC-CEEEEEEEecccccc---c---------CCHHHHHHHHHHhhHHHhc-cCC-HHHHH
Confidence            3455778899999999999999 999888877544321   1         0122334455555545553 577 88888


Q ss_pred             HHHHHHHHHHhhh
Q 039444           90 EIYRRYEIKVTDE  102 (121)
Q Consensus        90 eLF~r~~~~v~~~  102 (121)
                      ++..++.+.+.++
T Consensus       245 ~~~~~~~~~~~~~  257 (279)
T 3ccf_A          245 QLIRKVEATLQDK  257 (279)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            8888888877765

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=88.22  E-value=5.4  Score=29.43  Aligned_cols=80  Identities=11%  Similarity=0.215  Sum_probs=44.9

Q ss_pred             cCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHHHHHHHH
Q 039444           16 YTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRY   95 (121)
Q Consensus        16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~DeLF~r~   95 (121)
                      +.||++++.+.+++.| |++..++.+...+.              ..-..+...+++-.+. +.+.|| ++..+ +|..|
T Consensus       219 ~~~s~~~~~~~l~~aG-f~~~~~~~~~~~y~--------------~tl~~w~~~~~~~~~~-~~~~~~-~~~~~-~w~~y  280 (302)
T 3hem_A          219 RLPRISQVDYYSSNAG-WKVERYHRIGANYV--------------PTLNAWADALQAHKDE-AIALKG-QETCD-IYMHY  280 (302)
T ss_dssp             CCCCHHHHHHHHHHHT-CEEEEEEECGGGHH--------------HHHHHHHHHHHHTHHH-HHHHHC-HHHHH-HHHHH
T ss_pred             CCCCHHHHHHHHHhCC-cEEEEEEeCchhHH--------------HHHHHHHHHHHHhHHH-HHHHhC-HHHHH-HHHHH
Confidence            7899999999999988 88888776532211              1122233333333333 344588 65554 45555


Q ss_pred             HHHHhhhHHHhcCCceeEE
Q 039444           96 EIKVTDEILEKGRGAFANL  114 (121)
Q Consensus        96 ~~~v~~~~~~~~~~~~~~~  114 (121)
                      -.-.+.. .+.......++
T Consensus       281 l~~~~~~-f~~~~~~~~q~  298 (302)
T 3hem_A          281 LRGCSDL-FRDKYTDVCQF  298 (302)
T ss_dssp             HHHHHHH-HHTTSSEEEEE
T ss_pred             HHHHHHH-HhCCCCeEEEE
Confidence            4444444 55554444443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=86.80  E-value=6.9  Score=28.06  Aligned_cols=67  Identities=6%  Similarity=0.003  Sum_probs=42.5

Q ss_pred             ccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHHHHHHH
Q 039444           15 IYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRR   94 (121)
Q Consensus        15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~DeLF~r   94 (121)
                      .+.++++++++++++.| |++.+.+.+...+.+              ....+...+++.... +..++| ++..+.+...
T Consensus       191 ~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~  253 (273)
T 3bus_A          191 LSLGGIDEYESDVRQAE-LVVTSTVDISAQARP--------------SLVKTAEAFENARSQ-VEPFMG-AEGLDRMIAT  253 (273)
T ss_dssp             CCCCCHHHHHHHHHHTT-CEEEEEEECHHHHTT--------------HHHHHHHHHHHTHHH-HHHHHC-HHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHcC-CeEEEEEECcHhHHH--------------HHHHHHHHHHHhHHH-HHhhcC-HHHHHHHHHH
Confidence            36789999999999999 888777766322111              112223333343333 457799 8888877777


Q ss_pred             HHHH
Q 039444           95 YEIK   98 (121)
Q Consensus        95 ~~~~   98 (121)
                      +...
T Consensus       254 ~~~~  257 (273)
T 3bus_A          254 FRGL  257 (273)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=84.45  E-value=2.3  Score=30.28  Aligned_cols=71  Identities=14%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             ccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHHHHHHH
Q 039444           15 IYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRR   94 (121)
Q Consensus        15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~DeLF~r   94 (121)
                      .+.++.+++++++++.| |++...+...  |..            ....+.+...+++.+.+.+ .+.+ ++..+++..+
T Consensus       171 ~~~~~~~~~~~~l~~~G-f~~~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~  233 (263)
T 2yqz_A          171 LHAKRLKEVEEALRRLG-LKPRTREVAR--WRE------------ERTPREALEALSERLYSFT-QGLP-EPVHARVMER  233 (263)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCCEEEEEEE--EEE------------EECHHHHHHHHHTTCSGGG-SSSC-HHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcC-CCcceEEEee--eec------------CCCHHHHHHHHHHhhcccc-cCCC-HHHHHHHHHH
Confidence            34568999999999999 8877665442  322            1123444445554444433 5677 8888888888


Q ss_pred             HHHHHhhh
Q 039444           95 YEIKVTDE  102 (121)
Q Consensus        95 ~~~~v~~~  102 (121)
                      +.+.+.++
T Consensus       234 ~~~~l~~~  241 (263)
T 2yqz_A          234 LWAWAEAE  241 (263)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88887776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	5e-28

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  102 bits (256), Expect = 5e-28
 Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 1   GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
           G IEE K+   N P YTP   EV+  I +EGSF I  +E   + W     ++ + G    
Sbjct: 240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW-SSCTKDGDGGGSVE 298

Query: 61  ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
             G +V R +RAV E L+    G +AI E+++ RY++ + +  + K +  F N+++SL++
Sbjct: 299 EEGYNVARCMRAVAEPLLLDHFG-EAIIEDVFHRYKLLIIER-MSKEKTKFINVIVSLIR 356

Query: 121 K 121
           K
Sbjct: 357 K 357

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	91.42
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	90.68

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=1.6e-37  Score=248.75  Aligned_cols=117  Identities=36%  Similarity=0.616  Sum_probs=108.9

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCcc-ccchhhhHHHHHHHHHHHHHHHHH
Q 039444            1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNE-GLDKYARGKHVTRLVRAVVESLVS   79 (121)
Q Consensus         1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~iRAv~Epll~   79 (121)
                      |+|++||+|+||+|+|+||++||+++|+++|||+|+++|+++.+|++  .+++.+ ..|...+|+.+|+++||++||||+
T Consensus       240 GlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~--~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l~  317 (359)
T d1m6ex_         240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSS--CTKDGDGGGSVEEEGYNVARCMRAVAEPLLL  317 (359)
T ss_dssp             TCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTC--CSSCTTCCSSTTTTTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeeeccccc--ccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999988  333222 346778999999999999999999


Q ss_pred             hhhCChhHHHHHHHHHHHHHhhhHHHhcCCceeEEEEEEeeC
Q 039444           80 SICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK  121 (121)
Q Consensus        80 ~HFG~~~I~DeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk  121 (121)
                      +||| ++|||+||+||+++|+++ ++.++.+++++++||+||
T Consensus       318 ~hfg-~~i~D~lF~r~~~~v~~~-~~~~~~~~~~~~~sL~rK  357 (359)
T d1m6ex_         318 DHFG-EAIIEDVFHRYKLLIIER-MSKEKTKFINVIVSLIRK  357 (359)
T ss_dssp             HHHC-HHHHHHHHHHHHHHHHHH-HHSSCCEEEEEEEEEEBC
T ss_pred             HHcC-hHHHHHHHHHHHHHHHhh-HhhcCCceEEEEEEEEec
Confidence            9999 999999999999999999 999999999999999998

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.42  E-value=1.7  Score=31.30  Aligned_cols=25  Identities=16%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             cCCCHHHHHHHHHhcCceeeeeeeee
Q 039444           16 YTPYVDEVKQVIEREGSFDILQLETF   41 (121)
Q Consensus        16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~   41 (121)
                      +.||.+++...+++.| |+|...+.+
T Consensus       202 ~lPsl~~~~~~~e~ag-f~v~~~~~~  226 (285)
T d1kpga_         202 RLPSIPMVQECASANG-FTVTRVQSL  226 (285)
T ss_dssp             CCCCHHHHHHHHHTTT-CEEEEEEEC
T ss_pred             CCCChhhHHHHHHHhc-hhhcccccc
Confidence            5799999999998887 788776544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.68  E-value=1.5  Score=31.39  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=20.6

Q ss_pred             cCCCHHHHHHHHHhcCceeeeeeeee
Q 039444           16 YTPYVDEVKQVIEREGSFDILQLETF   41 (121)
Q Consensus        16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~   41 (121)
                      +.||.+|+.+.+++.| |+|...+.+
T Consensus       192 ~lPS~~~l~~~~e~aG-f~v~~~~~~  216 (280)
T d2fk8a1         192 RLPSTEMMVEHGEKAG-FTVPEPLSL  216 (280)
T ss_dssp             CCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred             cccchHhhhhhHHhhc-cccceeeec
Confidence            6899999999999877 777766654