Citrus Sinensis ID: 039477

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEccccEEEEEEEEcEEcccEEEEEEEEEEEEcccccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHEEEEEEEEEcccccEEEEEEEcccHHHHccEEEEEEEEEEccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
GSPQIAKEIIEAIdnenyitnYKVIEGNLLELYKSFSstvkvtpkenddgslVHWIFEYEklnedvpdptgkLQILIDVAKDIDAHLLSQQP
Flexible Loop (DISEMBL)
GSPQIAKEIIeaidnenyiTNYKVIEGNLLELYKSFSSTVkvtpkenddgSLVHWIFEYEKlnedvpdpTGKLQILIDVAKDIDAHLLSQQP
Low Complexity Region (SEG)
GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP
Disordered region (IsUnstruct)
*******EIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAH******
Disordered Region (DISOPRED)
****IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLS***
Disordered Region (DISEMBL)
GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP
Disordered Region (DISPRO)
*SPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
Q9SSK7	316	MLP-like protein 34 OS=Ar	yes	no	0.989	0.287	0.505	2e-21
Q9SSK9	335	MLP-like protein 28 OS=Ar	no	no	0.967	0.265	0.461	6e-19
Q9SSK5	158	MLP-like protein 43 OS=Ar	no	no	0.989	0.575	0.439	1e-18
Q941R6	171	MLP-like protein 31 OS=Ar	no	no	0.989	0.532	0.461	4e-18
Q9C7I7	152	MLP-like protein 165 OS=A	no	no	0.978	0.592	0.417	2e-14
Q9C7I3	151	MLP-like protein 168 OS=A	no	no	0.978	0.596	0.4	2e-14
P85524	150	Kirola OS=Actinidia delic	N/A	no	0.934	0.573	0.420	8e-13
Q93VR4	155	MLP-like protein 423 OS=A	no	no	0.956	0.567	0.423	4e-11
Q06394	159	Major latex protein 146 O	N/A	no	0.967	0.559	0.355	7e-11
P19825	159	Major latex protein 15 OS	N/A	no	0.956	0.553	0.382	4e-10

>sp|Q9SSK7|MLP34_ARATH MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE IEA+D E  +  ++VIEG+L++ YKSF  T++VTPK    GS+VHW FEYE
Sbjct: 226 GEAKVAKERIEAVDPEKNLITFRVIEGDLMKEYKSFVITIQVTPKHGGSGSVVHWHFEYE 285

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K+NE+V  P   LQ  ++V+K+ID HLL+++
Sbjct: 286 KINEEVAHPETLLQFAVEVSKEIDEHLLAEE 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK9|MLP28_ARATH MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 66/91 (72%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE IEA++ +  +  ++VIEG+L++ YKSF  T++VTPK    GS+VHW  EYE
Sbjct: 83  GEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYE 142

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K++E+V  P   LQ  ++V+K+ID HLL+++
Sbjct: 143 KISEEVAHPETLLQFCVEVSKEIDEHLLAEE 173

Can bind steroids (in vitro), and may also bind other types of hydrophobic ligands.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSK5|MLP43_ARATH MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP43 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 64/91 (70%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G   + K  IEA+D E  +  +KV+EG+L+  YKSF+ T++VTPK+ + GS+ HW  EYE
Sbjct: 68  GKLTVGKNKIEAVDPEKNLITFKVLEGDLMNEYKSFAFTLQVTPKQGESGSIAHWHLEYE 127

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K++E+V  P   LQ  ++++K+ID HLL+++
Sbjct: 128 KISEEVAHPETLLQFCVEISKEIDEHLLAEE 158

Arabidopsis thaliana (taxid: 3702)

>sp|Q941R6|MLP31_ARATH MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 64/91 (70%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE IEA++ E  +  ++VIEG+LL+ YKSF  T++VTPK    GS+VHW  EYE
Sbjct: 81  GEAKVAKERIEAVEPEKNLITFRVIEGDLLKEYKSFVITIQVTPKRGGPGSVVHWHVEYE 140

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K+++ V  P   L   ++V+K+ID HLL+++
Sbjct: 141 KIDDKVAHPETFLDFCVEVSKEIDEHLLNEE 171

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7I7|ML165_ARATH MLP-like protein 165 OS=Arabidopsis thaliana GN=MLP165 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKV-TPKENDDGSLVHWIFEY 59
           G P+++K++IE ID E  +   +V+EG L + YKSF  T+KV +PK    GS+V W  +Y
Sbjct: 61  GEPRVSKDMIEVIDEEKNVIQLRVLEGPLKKEYKSFLKTMKVMSPKHGGPGSVVKWNMKY 120

Query: 60  EKLNEDVPDPTGKLQILIDVAKDIDAHLLSQ 90
           E+++++V  P   LQ  ++V K+ID +LLS+
Sbjct: 121 ERIDQNVDHPNRLLQFFVEVTKEIDQYLLSK 151

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7I3|ML168_ARATH MLP-like protein 168 OS=Arabidopsis thaliana GN=MLP168 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 59/90 (65%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G P+++K++IEAID +  +  ++V+EG L E Y  FS T+KV+PK+   GS+V W  +YE
Sbjct: 61  GEPKVSKDMIEAIDMKMNMIQWRVLEGPLKEEYNIFSKTMKVSPKQGGSGSVVKWNLKYE 120

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQ 90
           +++E V      LQ  ++   +ID +LLS+
Sbjct: 121 RIDEKVAHLERLLQFFVECVNEIDQYLLSE 150

Arabidopsis thaliana (taxid: 3702)

>sp|P85524|KIRO_ACTDE Kirola OS=Actinidia deliciosa PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  + AK+I+EAID E     +K++EG+L+ELYK+F   V+V  K   +   V W F YE
Sbjct: 64  GKEKTAKDIVEAIDEETKSVTFKIVEGDLMELYKTFIIIVQVDTKGEHNS--VTWTFHYE 121

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLL 88
           KL EDV +P   +   I++ KDI+ + L
Sbjct: 122 KLKEDVEEPNTLMNFCIEITKDIETYHL 149

Actinidia deliciosa (taxid: 3627)

>sp|Q93VR4|ML423_ARATH MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 4/92 (4%)

Query: 1   GSP--QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFE 58
           GSP  +I+ E IEA+D EN   +Y +I G +LE YK+F  T+ V PK  D GSL+ W  E
Sbjct: 63  GSPLVKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKGTITVIPK--DGGSLLKWSGE 120

Query: 59  YEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQ 90
           +EK   ++ DP       +   K+ID +LL Q
Sbjct: 121 FEKTAHEIDDPHVIKDFAVKNFKEIDEYLLKQ 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q06394|ML146_PAPSO Major latex protein 146 OS=Papaver somniferum GN=MLP146 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G P   KE     ++E    ++ V+ G+L+  YK F +T+ V PK N  G +V W  +YE
Sbjct: 70  GKPLSCKEKT-TYNDETRTIHHMVVAGDLMNDYKKFDATLVVNPKSNGHGCIVKWTIDYE 128

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQ 90
           K+NED P P G L     + +D+ +HL + 
Sbjct: 129 KMNEDSPVPFGYLACYQQITEDLSSHLCAS 158

Not known; MLPs constitute up to 50% of the soluble latex protein.

Papaver somniferum (taxid: 3469)

>sp|P19825|MLP15_PAPSO Major latex protein 15 OS=Papaver somniferum GN=MLP15 PE=2 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G P   KE     ++E    N+  IEG ++  YK F +T+ V PK N  GS+V WI +YE
Sbjct: 70  GKPLTVKEKT-TYNDETRTINHNGIEGGMMNDYKKFVATLVVKPKANGQGSIVTWIVDYE 128

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLS 89
           K+NED P P   L       +D+++HL +
Sbjct: 129 KINEDSPVPFDYLAFFQQNIEDLNSHLCA 157

Not known; MLPs constitute up to 50% of the soluble latex protein.

Papaver somniferum (taxid: 3469)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
13172242	156	major latex-like protein [Prunus persica	1.0	0.589	0.543	2e-21
30698757	316	MLP-like protein 34 [Arabidopsis thalian	0.989	0.287	0.505	6e-20
297789656	245	hypothetical protein ARALYDRAFT_497302 [	0.978	0.367	0.494	8e-20
297841835	316	predicted protein [Arabidopsis lyrata su	0.989	0.287	0.494	9e-20
255587428	151	Major latex protein, putative [Ricinus c	0.934	0.569	0.522	3e-19
255590991	151	Major latex protein, putative [Ricinus c	0.923	0.562	0.540	5e-19
297841843	159	bet v I allergen family protein [Arabido	0.989	0.572	0.483	6e-19
15223272	159	polyketide cyclase, dehydrase and lipid	0.989	0.572	0.494	1e-18
224140773	120	predicted protein [Populus trichocarpa]	0.923	0.708	0.528	2e-18
224111490	158	predicted protein [Populus trichocarpa]	0.989	0.575	0.510	1e-17

>gi|13172242|gb|AAK14060.1|AF239177_1 major latex-like protein [Prunus persica]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 64/92 (69%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE+IEAID E  +  +KVIEG+LLE YKSF  T+  TPK +  GS+VHW  EYE
Sbjct: 65  GKAKVAKELIEAIDAEKNLITFKVIEGDLLEHYKSFKITIHATPKAHGQGSIVHWTMEYE 124

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92
           K + D+ DP   LQ  +DV+KD+DAHL S Q 
Sbjct: 125 KHHGDIEDPHTLLQFAVDVSKDVDAHLTSAQA 156

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698757|ref|NP_850976.1| MLP-like protein 34 [Arabidopsis thaliana] gi|79321108|ref|NP_001031265.1| MLP-like protein 34 [Arabidopsis thaliana] gi|21542143|sp|Q9SSK7.1|MLP34_ARATH RecName: Full=MLP-like protein 34 gi|5902401|gb|AAD55503.1|AC008148_13 Unknown protein [Arabidopsis thaliana] gi|13926294|gb|AAK49615.1|AF372899_1 At1g70850/F15H11_10 [Arabidopsis thaliana] gi|16197688|emb|CAC83579.1| major latex-like protein [Arabidopsis thaliana] gi|16323244|gb|AAL15356.1| At1g70850/F15H11_10 [Arabidopsis thaliana] gi|110740285|dbj|BAF02039.1| hypothetical protein [Arabidopsis thaliana] gi|332197006|gb|AEE35127.1| MLP-like protein 34 [Arabidopsis thaliana] gi|332197008|gb|AEE35129.1| MLP-like protein 34 [Arabidopsis thaliana]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE IEA+D E  +  ++VIEG+L++ YKSF  T++VTPK    GS+VHW FEYE
Sbjct: 226 GEAKVAKERIEAVDPEKNLITFRVIEGDLMKEYKSFVITIQVTPKHGGSGSVVHWHFEYE 285

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K+NE+V  P   LQ  ++V+K+ID HLL+++
Sbjct: 286 KINEEVAHPETLLQFAVEVSKEIDEHLLAEE 316

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297789656|ref|XP_002862771.1| hypothetical protein ARALYDRAFT_497302 [Arabidopsis lyrata subsp. lyrata] gi|297308487|gb|EFH39029.1| hypothetical protein ARALYDRAFT_497302 [Arabidopsis lyrata subsp. lyrata]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 67/91 (73%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE IEA+D E  +  ++VIEG+L++ YKSF  T++VTPK    GS+VHW FEYE
Sbjct: 155 GEAKVAKERIEAVDPEKNLITFRVIEGDLMKEYKSFVITIQVTPKHGGSGSVVHWHFEYE 214

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K+NE+V  P   LQ  ++++K+ID HLL+++
Sbjct: 215 KINEEVAHPETLLQFAVEISKEIDEHLLAEE 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841835|ref|XP_002888799.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334640|gb|EFH65058.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 67/91 (73%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE IEA+D E  +  ++VIEG+L++ YKSF  T++VTPK    GS+VHW FEYE
Sbjct: 226 GEAKVAKERIEAVDPEKNLITFRVIEGDLMKEYKSFVITIQVTPKHGGSGSVVHWHFEYE 285

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K+NE+V  P   LQ  ++++K+ID HLL+++
Sbjct: 286 KINEEVAHPETLLQFAVEISKEIDEHLLAEE 316

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587428|ref|XP_002534267.1| Major latex protein, putative [Ricinus communis] gi|223525605|gb|EEF28116.1| Major latex protein, putative [Ricinus communis]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 66/88 (75%), Gaps = 2/88 (2%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE++E ID+ N  T +KVIEG++L+ YKSF   V+ TP+   +GS VHWI EYE
Sbjct: 64  GKAKVAKELVEDIDDVNMSTTFKVIEGDILKEYKSFKFVVQATPQ--GEGSTVHWILEYE 121

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLL 88
           KLN ++P+PT  L+ ++D+ KDIDAHL+
Sbjct: 122 KLNANIPEPTSLLEFVVDLTKDIDAHLV 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590991|ref|XP_002535412.1| Major latex protein, putative [Ricinus communis] gi|223523187|gb|EEF26971.1| Major latex protein, putative [Ricinus communis]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 2/87 (2%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE++E ID+ N  T +KVIEG+LL+ YKSF   V+ TPK    GS+VHW   YE
Sbjct: 64  GKAKVAKEVVEDIDDVNMSTTFKVIEGDLLKEYKSFKFVVQATPKGK--GSIVHWTLVYE 121

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHL 87
           KLN ++P+PT  L+  +DV KDIDAHL
Sbjct: 122 KLNANIPEPTSMLEFAVDVTKDIDAHL 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841843|ref|XP_002888803.1| bet v I allergen family protein [Arabidopsis lyrata subsp. lyrata] gi|297334644|gb|EFH65062.1| bet v I allergen family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 68/91 (74%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AK+ IE++D ++    YKV+EG+LL+ Y SF +T +VTPKE + GS+ HW FEYE
Sbjct: 69  GEAKVAKQRIESLDPDHNRVTYKVVEGDLLKEYTSFVTTFQVTPKEGEPGSVAHWHFEYE 128

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K+NE+V  P   LQ+ ++V+K++D HLLS++
Sbjct: 129 KINEEVAHPETLLQLAVEVSKEMDEHLLSEE 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223272|ref|NP_177244.1| polyketide cyclase, dehydrase and lipid transport domain-containing protein [Arabidopsis thaliana] gi|16197678|emb|CAC83598.1| major latex-like protein [Arabidopsis thaliana] gi|26450352|dbj|BAC42292.1| unknown protein [Arabidopsis thaliana] gi|28972985|gb|AAO63817.1| putative Csf-2-related protein [Arabidopsis thaliana] gi|332197012|gb|AEE35133.1| polyketide cyclase, dehydrase and lipid transport domain-containing protein [Arabidopsis thaliana]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 65/91 (71%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  + AK+ IE++D E     Y+V+EG+LL+ Y SF +T +VTPKE + GS+ HW FEYE
Sbjct: 69  GEAKSAKQRIESLDPEKNRITYRVVEGDLLKEYTSFVTTFQVTPKEGEPGSVAHWHFEYE 128

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K+NE+V  P   LQ+  +V+KD+D HLLS++
Sbjct: 129 KINEEVAHPETLLQLATEVSKDMDEHLLSEE 159

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140773|ref|XP_002323753.1| predicted protein [Populus trichocarpa] gi|222866755|gb|EEF03886.1| predicted protein [Populus trichocarpa]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 2/87 (2%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G+P++AKE+IE IDN    T +KVIEG+L+E YKSF   V+ TPK +  GS+VHW   +E
Sbjct: 31  GAPKVAKEVIEDIDNTKLSTTFKVIEGDLMEAYKSFKVIVQATPKGH--GSVVHWTLIFE 88

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHL 87
           KLNE++P PT  L   +D  KDI+AH+
Sbjct: 89  KLNENIPAPTAFLDNAVDFTKDINAHM 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111490|ref|XP_002315876.1| predicted protein [Populus trichocarpa] gi|222864916|gb|EEF02047.1| predicted protein [Populus trichocarpa]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  + AKE+IEAID+E   T +KVIEG++   YK+F   V+ TPK  +   L HW FEYE
Sbjct: 64  GVAKTAKEVIEAIDDEKLSTTFKVIEGDITTEYKNFIIIVQATPK-GEGSCLAHWTFEYE 122

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92
           KLNE+VPDP   L+  I  +KDI+ H L+Q P
Sbjct: 123 KLNENVPDPQTLLEFCIHCSKDIEDHHLTQLP 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2013930	316	MLP34 "AT1G70850" [Arabidopsis	0.989	0.287	0.505	1.1e-21
TAIR|locus:2013920	159	AT1G70880 "AT1G70880" [Arabido	0.978	0.566	0.521	2.7e-20
TAIR|locus:2014000	335	MLP28 "AT1G70830" [Arabidopsis	0.989	0.271	0.461	1.2e-19
TAIR|locus:2013950	158	MLP43 "AT1G70890" [Arabidopsis	0.989	0.575	0.439	2.5e-19
TAIR|locus:2013970	171	MLP31 "AT1G70840" [Arabidopsis	0.989	0.532	0.461	8.3e-19
TAIR|locus:2143809	166	AT5G28010 "AT5G28010" [Arabido	0.989	0.548	0.450	2.2e-18
TAIR|locus:2143804	164	AT5G28000 "AT5G28000" [Arabido	0.989	0.554	0.450	9.5e-18
TAIR|locus:2206737	152	MLP165 "AT1G35260" [Arabidopsi	0.978	0.592	0.417	4.7e-16
TAIR|locus:2206702	151	MLP168 "AT1G35310" [Arabidopsi	0.978	0.596	0.4	6.9e-15
UNIPROTKB|P85524	150	P85524 "Kirola" [Actinidia del	0.923	0.566	0.431	1.8e-14

TAIR|locus:2013930 MLP34 "AT1G70850" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query:     1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
             G  ++AKE IEA+D E  +  ++VIEG+L++ YKSF  T++VTPK    GS+VHW FEYE
Sbjct:   226 GEAKVAKERIEAVDPEKNLITFRVIEGDLMKEYKSFVITIQVTPKHGGSGSVVHWHFEYE 285

Query:    61 KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
             K+NE+V  P   LQ  ++V+K+ID HLL+++
Sbjct:   286 KINEEVAHPETLLQFAVEVSKEIDEHLLAEE 316

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013920 AT1G70880 "AT1G70880" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 48/92 (52%), Positives = 68/92 (73%)

Query:     1 GSPQIAKEIIEAIDNE-NYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
             G  + AK+ IE++D E N IT Y+V+EG+LL+ Y SF +T +VTPKE + GS+ HW FEY
Sbjct:    69 GEAKSAKQRIESLDPEKNRIT-YRVVEGDLLKEYTSFVTTFQVTPKEGEPGSVAHWHFEY 127

Query:    60 EKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
             EK+NE+V  P   LQ+  +V+KD+D HLLS++
Sbjct:   128 EKINEEVAHPETLLQLATEVSKDMDEHLLSEE 159

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2014000 MLP28 "AT1G70830" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 42/91 (46%), Positives = 66/91 (72%)

Query:     1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
             G  ++AKE IEA++ +  +  ++VIEG+L++ YKSF  T++VTPK    GS+VHW  EYE
Sbjct:    83 GEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYE 142

Query:    61 KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
             K++E+V  P   LQ  ++V+K+ID HLL+++
Sbjct:   143 KISEEVAHPETLLQFCVEVSKEIDEHLLAEE 173

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2013950 MLP43 "AT1G70890" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 40/91 (43%), Positives = 64/91 (70%)

Query:     1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
             G   + K  IEA+D E  +  +KV+EG+L+  YKSF+ T++VTPK+ + GS+ HW  EYE
Sbjct:    68 GKLTVGKNKIEAVDPEKNLITFKVLEGDLMNEYKSFAFTLQVTPKQGESGSIAHWHLEYE 127

Query:    61 KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
             K++E+V  P   LQ  ++++K+ID HLL+++
Sbjct:   128 KISEEVAHPETLLQFCVEISKEIDEHLLAEE 158

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2013970 MLP31 "AT1G70840" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 42/91 (46%), Positives = 64/91 (70%)

Query:     1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
             G  ++AKE IEA++ E  +  ++VIEG+LL+ YKSF  T++VTPK    GS+VHW  EYE
Sbjct:    81 GEAKVAKERIEAVEPEKNLITFRVIEGDLLKEYKSFVITIQVTPKRGGPGSVVHWHVEYE 140

Query:    61 KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
             K+++ V  P   L   ++V+K+ID HLL+++
Sbjct:   141 KIDDKVAHPETFLDFCVEVSKEIDEHLLNEE 171

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2143809 AT5G28010 "AT5G28010" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 41/91 (45%), Positives = 62/91 (68%)

Query:     1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
             G  ++AKE IE ++ E  +  ++VIEG+++  YKSF  T++VTPKE   GS+V W  EYE
Sbjct:    76 GQAKVAKERIELVEPEKKLIKFRVIEGDVMAEYKSFLITIQVTPKEGGTGSVVKWHIEYE 135

Query:    61 KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
             K++E+VP P   L    ++ K+ID HLLS++
Sbjct:   136 KIDENVPHPENLLPFFAEMTKEIDEHLLSEE 166

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2143804 AT5G28000 "AT5G28000" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 41/91 (45%), Positives = 61/91 (67%)

Query:     1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
             G  ++AKE IE ++ E  +  ++VIEG++L +YK+F  T+ VTPKE   GS+  W  EYE
Sbjct:    74 GKAKVAKERIELVEPEKKLIKFRVIEGDVLAVYKNFFITISVTPKEGGVGSVAKWHLEYE 133

Query:    61 KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
             K + +VPDP   L  L ++ K+ID HLLS++
Sbjct:   134 KNDVNVPDPENFLPFLAEMTKEIDEHLLSEE 164

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2206737 MLP165 "AT1G35260" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 38/91 (41%), Positives = 61/91 (67%)

Query:     1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKV-TPKENDDGSLVHWIFEY 59
             G P+++K++IE ID E  +   +V+EG L + YKSF  T+KV +PK    GS+V W  +Y
Sbjct:    61 GEPRVSKDMIEVIDEEKNVIQLRVLEGPLKKEYKSFLKTMKVMSPKHGGPGSVVKWNMKY 120

Query:    60 EKLNEDVPDPTGKLQILIDVAKDIDAHLLSQ 90
             E+++++V  P   LQ  ++V K+ID +LLS+
Sbjct:   121 ERIDQNVDHPNRLLQFFVEVTKEIDQYLLSK 151

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2206702 MLP168 "AT1G35310" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 36/90 (40%), Positives = 59/90 (65%)

Query:     1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
             G P+++K++IEAID +  +  ++V+EG L E Y  FS T+KV+PK+   GS+V W  +YE
Sbjct:    61 GEPKVSKDMIEAIDMKMNMIQWRVLEGPLKEEYNIFSKTMKVSPKQGGSGSVVKWNLKYE 120

Query:    61 KLNEDVPDPTGKLQILIDVAKDIDAHLLSQ 90
             +++E V      LQ  ++   +ID +LLS+
Sbjct:   121 RIDEKVAHLERLLQFFVECVNEIDQYLLSE 150

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

UNIPROTKB|P85524 P85524 "Kirola" [Actinidia deliciosa (taxid:3627)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 38/88 (43%), Positives = 54/88 (61%)

Query:     1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
             G  + AK+I+EAID E     +K++EG+L+ELYK+F   V+V  K   +   V W F YE
Sbjct:    64 GKEKTAKDIVEAIDEETKSVTFKIVEGDLMELYKTFIIIVQVDTKGEHNS--VTWTFHYE 121

Query:    61 KLNEDVPDPTGKLQILIDVAKDIDA-HL 87
             KL EDV +P   +   I++ KDI+  HL
Sbjct:   122 KLKEDVEEPNTLMNFCIEITKDIETYHL 149

GO:0016068 "type I hypersensitivity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	3e-29
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	5e-28
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	3e-22
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	1e-06

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  101 bits (254), Expect = 3e-29
 Identities = 44/89 (49%), Positives = 63/89 (70%), Gaps = 1/89 (1%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G P++ KE IEA D +N    Y V+EG++LE YKSF +T++V PK N  GS+V W  EYE
Sbjct: 62  GKPKVVKERIEADDEKNKTITYSVLEGDVLEDYKSFITTLQVIPKSNG-GSIVKWTIEYE 120

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLS 89
           K+ +DVP+P   L+ ++ + KDI+AHLL+
Sbjct: 121 KIGDDVPEPEKYLKFVVKLTKDIEAHLLA 149

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 98.6 bits (246), Expect = 5e-28
 Identities = 42/90 (46%), Positives = 63/90 (70%), Gaps = 1/90 (1%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++ KE IEA+D+E     ++V+EG+++E YKSF  T++VTPK    GS+V W  EYE
Sbjct: 63  GKEEVFKERIEAVDDEKKTITFRVLEGDVMEEYKSFKGTIQVTPKSGG-GSVVKWTLEYE 121

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQ 90
           K+NEDVP+P   +  ++++ KDID HLL +
Sbjct: 122 KINEDVPEPEKYMDFVVELTKDIDEHLLKE 151

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score = 83.8 bits (208), Expect = 3e-22
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLEL-YKSFSSTVKVTPKENDDGSLVHWIFEY 59
           G  +  KE I+A+D EN    Y VIEG++L+  YKS+   +K  PK  D G +V W  EY
Sbjct: 59  GKVKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKG-DGGCVVKWTIEY 117

Query: 60  EKLNEDVPDPTGKLQILIDVAKDIDAHLLSQ 90
           EK  +  P             K   A     
Sbjct: 118 EKKGDAEPPEEEIKAGKEKALKMFKAVEAYL 148

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
                 +E + A+D+     +Y+++EG L    K++ +T++VTP E D G+ V W  E+ 
Sbjct: 54  KDGGTVRERLLALDDAERRYSYRIVEGPLP--VKNYVATIRVTP-EGDGGTRVTWTAEF- 109

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHL 87
               D P+          +     A L
Sbjct: 110 ----DPPEGLTDELARAFLTGVYRAGL 132

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	99.95
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	99.9
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	98.67
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	98.26
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	98.14
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	97.67
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	97.22
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	97.13
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	97.05
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	96.97
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	96.94
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	96.53
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	96.47
PRK10724	158	hypothetical protein; Provisional	96.22
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	96.15
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	96.12
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	95.94
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	94.95
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	94.06
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	93.28
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	91.1
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	90.06
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	89.94
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	88.98
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	88.82
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	88.63
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	88.47
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	87.39
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	84.85
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	84.84
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	84.47
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	81.72
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	81.56
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	80.28
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	80.17

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.95  E-value=1.2e-26  Score=153.82  Aligned_cols=89  Identities=46%  Similarity=0.726  Sum_probs=84.7

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVA   80 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~   80 (92)
                      |++.++|||++++|+++|+++|+++||+++..+.+|.++++++|.++| +|+++|+++|++.++..++|+.+++++.+|+
T Consensus        63 ~~~~~~Kekve~~D~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g-~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~  141 (151)
T PF00407_consen   63 GPFKYVKEKVEAIDEENKTITYTVIEGDVLGDYKSFKSTIQKIPKGDG-GCVVKWTIEYEKKGEDVPPPEKYLDFAVGMF  141 (151)
T ss_dssp             SSEEEEEEEEEEEETTTTEEEEEEEEETTGTTTEEEEEEEEEEEETTS-CEEEEEEEEEEESSTSCHHHHHHHHHHHHHH
T ss_pred             CCcceeEEEEEeecCCCcEEEEEEEeccccccEEEEEEEEEecCCCCC-ceEEEEEEEEEecCCCCCCcHHHHHHHHHHH
Confidence            567899999999999999999999999999889999999999999888 8999999999999998888999999999999


Q ss_pred             HHHHHHHhcC
Q 039477           81 KDIDAHLLSQ   90 (92)
Q Consensus        81 k~ie~~l~~~   90 (92)
                      |+||+||++|
T Consensus       142 K~ieayLlan  151 (151)
T PF00407_consen  142 KAIEAYLLAN  151 (151)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcC
Confidence            9999999997

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=99.90  E-value=1.8e-22  Score=132.76  Aligned_cols=88  Identities=33%  Similarity=0.466  Sum_probs=81.4

Q ss_pred             CceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHH
Q 039477            2 SPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVA   80 (92)
Q Consensus         2 ~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~   80 (92)
                      +++++||||+++|+++|+++|++++|+++ .+|++|.++++|.|.+++ +|+++|+++|++.++.+++|+.+++.+..++
T Consensus        60 ~~~~~kE~l~~~D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~-~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~  138 (148)
T cd07816          60 KVKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDG-GCVVKWTIEYEKKGDAEPPEEEIKAGKEKAL  138 (148)
T ss_pred             cceEEEEEEEEEcccccEEEEEEEecccccCceEEEEEEEEEEECCCC-CEEEEEEEEEEECCCCCCCHHHHHhHHHHHH
Confidence            45689999999999999999999999997 479999999999999666 8999999999999999899999999999999


Q ss_pred             HHHHHHHhcC
Q 039477           81 KDIDAHLLSQ   90 (92)
Q Consensus        81 k~ie~~l~~~   90 (92)
                      ++++.|++.+
T Consensus       139 ~~~~~~~~~~  148 (148)
T cd07816         139 KMFKAVEAYL  148 (148)
T ss_pred             HHHHHHHhcC
Confidence            9999998753

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=98.67  E-value=6.7e-07  Score=56.02  Aligned_cols=80  Identities=24%  Similarity=0.413  Sum_probs=60.5

Q ss_pred             eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChh---hHHHHHHHHH
Q 039477            4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPT---GKLQILIDVA   80 (92)
Q Consensus         4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~---~~~~~~~~~~   80 (92)
                      ..+++++..+|+.++.+.|++.+|+.  ++.++..+++|.|.++| +|.|+|+..|++.+. .+.+.   ...+.+...+
T Consensus        57 ~~~~~~i~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l  132 (140)
T cd07821          57 GTVRERLLALDDAERRYSYRIVEGPL--PVKNYVATIRVTPEGDG-GTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGL  132 (140)
T ss_pred             CEEEEEehhcCccCCEEEEEecCCCC--CcccceEEEEEEECCCC-ccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHH
Confidence            35678999999887899999999866  78889999999998776 899999999999865 22221   1133344666


Q ss_pred             HHHHHHH
Q 039477           81 KDIDAHL   87 (92)
Q Consensus        81 k~ie~~l   87 (92)
                      +.|.+++
T Consensus       133 ~~L~~~~  139 (140)
T cd07821         133 AALKAAL  139 (140)
T ss_pred             HHHHHhh
Confidence            7777665

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.26  E-value=4.3e-05  Score=48.61  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=52.1

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHH-----HHHHHHH
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQ-----ILIDVAK   81 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~-----~~~~~~k   81 (92)
                      ..++...++.++.++|++++|+    +..+.++.++.|.+++++|.++|.+.+++... .  |..+..     ....+++
T Consensus        64 ~~~~~~~~~~~~~i~~~~~~g~----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~-~--p~~l~~~~~~~~~~~~l~  136 (144)
T cd08866          64 VLELREREEFPRELDFEMVEGD----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF-A--PVFLVEFVLRQDLPTNLL  136 (144)
T ss_pred             EEEEEEecCCCceEEEEEcCCc----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC-C--CHHHHHHHHHHHHHHHHH
Confidence            3445666666899999999884    56789999999988733899999999998753 2  223322     3335666


Q ss_pred             HHHHHH
Q 039477           82 DIDAHL   87 (92)
Q Consensus        82 ~ie~~l   87 (92)
                      +|.+.+
T Consensus       137 ~lr~~a  142 (144)
T cd08866         137 AIRAEA  142 (144)
T ss_pred             HHHHHH
Confidence            666543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=98.14  E-value=0.00034  Score=43.58  Aligned_cols=52  Identities=19%  Similarity=0.351  Sum_probs=45.4

Q ss_pred             eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEE
Q 039477            4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK   61 (92)
Q Consensus         4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~   61 (92)
                      ..+++++..++++++.+.|++.  ..  ++..+..++++.|.++  ||.++|+.+|+.
T Consensus        57 ~~~~~~i~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~--gt~v~~~~~~~~  108 (139)
T PF10604_consen   57 GTVREEITEYDPEPRRITWRFV--PS--GFTNGTGRWRFEPVGD--GTRVTWTVEFEP  108 (139)
T ss_dssp             SEEEEEEEEEETTTTEEEEEEE--SS--SSCEEEEEEEEEEETT--TEEEEEEEEEEE
T ss_pred             cceeEEEEEecCCCcEEEEEEE--ec--ceeEEEEEEEEEEcCC--CEEEEEEEEEEE
Confidence            4689999999988999999996  33  6778899999999875  599999999998

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=97.67  E-value=0.0018  Score=40.98  Aligned_cols=53  Identities=15%  Similarity=0.109  Sum_probs=43.6

Q ss_pred             EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCC
Q 039477            9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE   64 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~   64 (92)
                      ....+|++.+.+.|..++++.  .+..+.++.+|.|.+++ +|.|+|+.+|+....
T Consensus        61 ~~~~~~~~~~~i~~~~~~~~~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~  113 (142)
T cd08861          61 SRRVLDPEGRRIVFRQEEPPP--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGID  113 (142)
T ss_pred             EEEEEcCCCCEEEEEEeeCCC--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCC
Confidence            344578878999999998655  57788999999998766 899999999998853

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=97.22  E-value=0.019  Score=35.53  Aligned_cols=55  Identities=7%  Similarity=-0.037  Sum_probs=41.4

Q ss_pred             eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEc
Q 039477            4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL   62 (92)
Q Consensus         4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~   62 (92)
                      ....+++.++|+ .+.+.|+...++.  ..-....+++|.|.+++ +|.+.|...|...
T Consensus        58 ~~~~~~v~~~~p-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~T~~~~~~~~~g~  112 (141)
T cd07822          58 RSFKPRVTEVEP-PRRLAWRGGLPFP--GLLDGEHSFELEPLGDG-GTRFVHRETFSGL  112 (141)
T ss_pred             EEEEEEEEEEcC-CCEeEEEecCCCC--cEeeEEEEEEEEEcCCC-cEEEEEeeEEEEE
Confidence            456788888876 5789999887765  33346678889997555 8999999887643

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=97.13  E-value=0.0078  Score=38.05  Aligned_cols=49  Identities=12%  Similarity=0.248  Sum_probs=39.9

Q ss_pred             EEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            8 EIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         8 Erl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      .++. ++. .+++++..++|    +++.+.++.++.|.++| +|.|+|...|++.+
T Consensus        61 ~~~~-~~~-~~~i~~~~~~g----~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~  109 (138)
T cd07813          61 SRVT-LVP-PESIEAELVDG----PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKS  109 (138)
T ss_pred             EEEE-ecC-CCEEEEEecCC----ChhhceeEEEEEECCCC-CEEEEEEEEEEECC
Confidence            3444 555 67889988888    46678899999998876 89999999999985

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=97.05  E-value=0.021  Score=34.13  Aligned_cols=56  Identities=14%  Similarity=0.209  Sum_probs=44.5

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED   65 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~   65 (92)
                      ..+.++..+++ +..++|++..++.  . ..+..++++.+.+++ +|.++|+..+......
T Consensus        59 ~~~~~v~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~  114 (141)
T cd07812          59 TLTSEVTEVDP-PRPGRFRVTGGGG--G-VDGTGEWRLEPEGDG-GTRVTYTVEYDPPGPL  114 (141)
T ss_pred             cceEEEEEecC-CCceEEEEecCCC--C-cceeEEEEEEECCCC-cEEEEEEEEEecCCcc
Confidence            45778887776 7789999998876  3 578888999988764 7999999999987643

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=96.97  E-value=0.03  Score=34.49  Aligned_cols=49  Identities=16%  Similarity=0.199  Sum_probs=38.7

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEE
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK   61 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~   61 (92)
                      .+++++..+| .++.+.|....|++  .   +..++++.|.++  +|.++|+.+|..
T Consensus        60 ~~~~~v~~~~-p~~~~~~~~~~~~~--~---~~~~~~~~~~~~--~t~v~~~~~~~~  108 (140)
T cd08865          60 ELTYEITEYE-PGRRVVFRGSSGPF--P---YEDTYTFEPVGG--GTRVRYTAELEP  108 (140)
T ss_pred             EEEEEEEEec-CCcEEEEEecCCCc--c---eEEEEEEEEcCC--ceEEEEEEEEcc
Confidence            4578888877 56889999877644  2   678899988754  799999999986

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=96.94  E-value=0.021  Score=36.00  Aligned_cols=79  Identities=8%  Similarity=0.003  Sum_probs=49.2

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC--CC-ChhhHHHHHHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED--VP-DPTGKLQILIDVAK   81 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~--~~-~~~~~~~~~~~~~k   81 (92)
                      .+..++..+++ ++.++|+..-.+.  +......++++.|.++| +|.++++..|...+..  .. ........+...+.
T Consensus        62 ~~~~~v~~~~p-~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~g-~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~  137 (144)
T cd07825          62 RITNHVVAFEE-NRLIAWRPGPAGQ--EPGGHRWRWELEPIGPG-RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLD  137 (144)
T ss_pred             EEEEEEEEECC-CCEEEEEccCCCC--CCCceeEEEEEEECCCC-cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHH
Confidence            34556777765 5568998642222  22334567888887766 8999999998866431  11 12223455667788


Q ss_pred             HHHHHH
Q 039477           82 DIDAHL   87 (92)
Q Consensus        82 ~ie~~l   87 (92)
                      .|++++
T Consensus       138 ~L~~~~  143 (144)
T cd07825         138 RLATLA  143 (144)
T ss_pred             HHHHHh
Confidence            888776

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=96.53  E-value=0.086  Score=32.68  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             CCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477           17 NYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus        17 ~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      .+.++|+..+|.   +...+....++.|.++  +|.|+|+.+++...
T Consensus        73 ~~~i~~~~~~~~---~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~  114 (140)
T cd07819          73 AGSVSWTLVEGE---GNRSQEGSYTLTPKGD--GTRVTFDLTVELTV  114 (140)
T ss_pred             CCcEEEEEeccc---ceeEEEEEEEEEECCC--CEEEEEEEEEEecC
Confidence            678999999875   4777889999999865  69999999999865

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=96.47  E-value=0.076  Score=32.88  Aligned_cols=56  Identities=5%  Similarity=-0.101  Sum_probs=41.5

Q ss_pred             eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      ..++.++..+| .++.+.|+...++. .+.-....+++|.|.+ + +|.++|+.++....
T Consensus        57 ~~~~~~i~~~~-~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~T~v~~~~~~~~~~  112 (139)
T cd07814          57 GWVSGEVLEVE-PPRRLVFTWAFSDE-TPGPETTVTVTLEETG-G-GTRLTLTHSGFPEE  112 (139)
T ss_pred             EeccEEEEEEc-CCCeEEEEecccCC-CCCCceEEEEEEEECC-C-CEEEEEEEEccChH
Confidence            35677888887 45789999988753 1233467788888887 3 79999999988764

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>PRK10724 hypothetical protein; Provisional

Probab=96.22  E-value=0.056  Score=35.91  Aligned_cols=50  Identities=16%  Similarity=0.309  Sum_probs=38.7

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      ..|.. ++. .+++.+.+++|    +++.+.+..+|.|.+++ +|.|+...+|+-..
T Consensus        76 ~srv~-~~~-~~~I~~~~~~G----pF~~l~g~W~f~p~~~~-~t~V~~~l~fef~s  125 (158)
T PRK10724         76 TTRNQ-LTS-NQSILMQLVDG----PFKKLIGGWKFTPLSQE-ACRIEFHLDFEFTN  125 (158)
T ss_pred             EEEEE-ecC-CCEEEEEecCC----ChhhccceEEEEECCCC-CEEEEEEEEEEEch
Confidence            34444 343 44789999988    47789999999998766 79999999999664

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=96.15  E-value=0.16  Score=32.21  Aligned_cols=51  Identities=16%  Similarity=0.108  Sum_probs=37.7

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccce-eEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELY-KSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~-~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      ..++..++ .++.+.|++..++.   + .....++.+.|. ++ ||.++|+.+|+...
T Consensus        67 ~~~v~~~~-p~~~i~~~~~~~~~---~~~~~~~~~~~~~~-~~-gT~v~~~~~~~~~~  118 (150)
T cd07818          67 EMEITESV-PNERIEYELRFIKP---FEATNDVEFTLEPV-GG-GTKVTWGMSGELPF  118 (150)
T ss_pred             EEEEEecC-CCcEEEEEEEecCC---ccccceEEEEEEEc-CC-ceEEEEEEEecCCc
Confidence            44566665 46779999985433   3 367899999998 44 79999999998664

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=96.12  E-value=0.14  Score=31.68  Aligned_cols=52  Identities=21%  Similarity=0.247  Sum_probs=37.5

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      ....++..++ .++.+.|....|.    + .+..+++|.|.+++ +|.+++++.|++..
T Consensus        56 ~~~~~v~~~~-~~~~i~~~~~~~~----~-~~~~~~~f~~~~~~-~T~vt~~~~~~~~~  107 (139)
T cd07817          56 EWDAEITEQV-PNERIAWRSVEGA----D-PNAGSVRFRPAPGR-GTRVTLTIEYEPPG  107 (139)
T ss_pred             EEEEEEeccC-CCCEEEEEECCCC----C-CcceEEEEEECCCC-CeEEEEEEEEECCc
Confidence            3445555444 4556999887764    2 46688889887665 89999999999775

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=95.94  E-value=0.2  Score=31.14  Aligned_cols=52  Identities=8%  Similarity=0.006  Sum_probs=36.3

Q ss_pred             EEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            8 EIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         8 Erl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      -++..+|+ ++.+.++....+. .....+..++++.|. ++ ||.++|+++|+..+
T Consensus        63 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~-gT~v~~~~~~~~~g  114 (144)
T cd05018          63 VELSDLDP-PESYTITGEGKGG-AGFVKGTARVTLEPD-GG-GTRLTYTADAQVGG  114 (144)
T ss_pred             EEEEecCC-CcEEEEEEEEcCC-CceEEEEEEEEEEec-CC-cEEEEEEEEEEEcc
Confidence            44444443 4667777654322 145678999999997 45 89999999999765

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=94.95  E-value=0.55  Score=29.93  Aligned_cols=52  Identities=10%  Similarity=0.036  Sum_probs=32.3

Q ss_pred             EEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477           10 IEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus        10 l~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      +..++...+.+.++.-..+.. ..--....++++.| .++ +|.++|+++++..+
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~l~~-~~~-gT~v~~~~~~~~~g  115 (146)
T cd07823          63 LLEDDEAARRAVLEATGKDARGQGTAEATVTLRLSP-AGG-GTRVTVDTDLALTG  115 (146)
T ss_pred             EEeccCCCcEEEEEEEEecCCCcceEEEEEEEEEEe-cCC-cEEEEEEEEEEEee
Confidence            444444677777775542111 11114566777878 334 89999999998654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=94.06  E-value=0.82  Score=28.15  Aligned_cols=50  Identities=8%  Similarity=-0.104  Sum_probs=34.2

Q ss_pred             EEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEc
Q 039477            6 AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL   62 (92)
Q Consensus         6 ~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~   62 (92)
                      +..++..+++ .+.++++....     ...+..+++|.|.+++ +|.+.|+.+|...
T Consensus        59 ~~~~i~~~~p-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~t~l~~~~~~~~~  108 (138)
T cd08862          59 STFTVTELRP-GHSFTWTGPAP-----GISAVHRHEFEAKPDG-GVRVTTSESLSGP  108 (138)
T ss_pred             eEEEEEEecC-CCEEEEEecCC-----CEEEEEEEEEEEcCCC-cEEEEEEEEeecc
Confidence            4567777774 45677765432     2334578888887655 8999999988753

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=93.28  E-value=0.6  Score=29.41  Aligned_cols=49  Identities=16%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEc
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL   62 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~   62 (92)
                      +-++..++ .++.+++..+.|+    +..+..+..+.|.++  ||.++++++|+..
T Consensus        64 ~~~it~~~-p~~~f~~~~~~G~----~~~w~h~~~f~~~~~--gT~vt~~v~~~~p  112 (137)
T cd07820          64 TTEITEVE-PPRRFVDEQVSGP----FRSWRHTHRFEAIGG--GTLMTDRVEYRLP  112 (137)
T ss_pred             EEEEEEEc-CCCeEEEEeccCC----chhCEEEEEEEECCC--ceEEEEEEEEeCC
Confidence            34445554 4667888888774    455667777878654  7999999999974

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=91.10  E-value=1.6  Score=28.96  Aligned_cols=80  Identities=10%  Similarity=0.103  Sum_probs=50.6

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCC-C---ChhhHHH-HHHHHHH
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDV-P---DPTGKLQ-ILIDVAK   81 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~-~---~~~~~~~-~~~~~~k   81 (92)
                      +=++..+|+..++++-..-+|.. ..+-..++.+++.|.++  +|++.|.+.-+-.+--. .   -.+...+ +...+|+
T Consensus        61 ~~~~~~v~~~~~~~~i~g~G~~~-~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~  137 (146)
T COG3427          61 RVRFVNVDEPPRSITINGSGGGA-AGFADGTVDVQLEPSGE--GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFD  137 (146)
T ss_pred             EEEEccccCCCcEEEEEeecccc-cceeeeeeEEEEEEcCC--CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34556678888888888877433 46777888999988765  59999999966543210 0   0111122 2335667


Q ss_pred             HHHHHHhc
Q 039477           82 DIDAHLLS   89 (92)
Q Consensus        82 ~ie~~l~~   89 (92)
                      +|.++|.+
T Consensus       138 ~l~~~l~~  145 (146)
T COG3427         138 CLSSELAA  145 (146)
T ss_pred             HHHHHHhc
Confidence            77666643

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=90.06  E-value=3.7  Score=26.59  Aligned_cols=75  Identities=13%  Similarity=0.026  Sum_probs=47.0

Q ss_pred             EEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHH
Q 039477            6 AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDA   85 (92)
Q Consensus         6 ~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~   85 (92)
                      ..-++..+| .++.+.|+...++.     .-..+++|.+.+ + ||.++.+.++.+..   ............++..|.+
T Consensus        65 ~~~~v~e~~-p~~~l~~~~~~~~~-----~~~~~~~l~~~~-~-gT~v~~~~~~~~~~---~~~~~~~~GW~~~L~~Lk~  133 (157)
T cd08899          65 ATGTILACE-PPRLLAFTWGEGGG-----ESEVRFELAPEG-D-GTRLTLTHRLLDER---FGAGAVGAGWHLCLDVLEA  133 (157)
T ss_pred             cceEEEEEc-CCcEEEEEecCCCC-----CceEEEEEEEcC-C-CEEEEEEEeccCch---hhhhhhcccHHHHHHHHHH
Confidence            345666665 45677887765542     235577777754 4 79998888876543   1223334456677888888


Q ss_pred             HHhcCC
Q 039477           86 HLLSQQ   91 (92)
Q Consensus        86 ~l~~~~   91 (92)
                      |+-+.+
T Consensus       134 ~~e~~~  139 (157)
T cd08899         134 ALEGGP  139 (157)
T ss_pred             HHcCCC
Confidence            877655

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=89.94  E-value=3.6  Score=26.25  Aligned_cols=52  Identities=19%  Similarity=0.160  Sum_probs=32.4

Q ss_pred             EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      ++..+|+.++.. ..+-..+.. .-.+..+.+++...+++ +|.+.|+++++-.+
T Consensus        59 ~~~~~~~~~~~~-~~~~g~g~~-~~~~~~~~~~~~~~~~~-~T~v~~~~~~~~~G  110 (140)
T PF06240_consen   59 RITEIDPPESYT-LEFEGRGRG-GGSSASANITLSLEDDG-GTRVTWSADVEVGG  110 (140)
T ss_dssp             EEEEEETTTEEE-EEEEEEECT-CCEEEEEEEEEEECCCT-CEEEEEEEEEEEEC
T ss_pred             EEEEcCCCcceE-eeeeccCCc-cceEEEEEEEEEcCCCC-CcEEEEEEEEEEcc
Confidence            455666666552 444333332 23345667777766666 59999999999765

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=88.98  E-value=4.2  Score=25.79  Aligned_cols=76  Identities=12%  Similarity=-0.058  Sum_probs=39.6

Q ss_pred             EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCC-CChhhHHHHHHHHHHHHHHHH
Q 039477            9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDV-PDPTGKLQILIDVAKDIDAHL   87 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~-~~~~~~~~~~~~~~k~ie~~l   87 (92)
                      ++..++ ..+.+.|+---.+.  +-.....++++.|.+ + +|.++.+..|....... .......+....++..|++||
T Consensus        66 ~~~ei~-p~~~l~~t~~~~~~--~~~~s~v~~~l~~~~-~-gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l  140 (142)
T cd07826          66 VYHEVT-PPERIVQTEEFEGL--PDGVALETVTFTELG-G-RTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELL  140 (142)
T ss_pred             EEEEEc-CCCEEEEEeEecCC--CCCceEEEEEEEECC-C-CEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            445554 34445554322221  112245678888864 4 79999876653211100 011122345667889999988


Q ss_pred             hc
Q 039477           88 LS   89 (92)
Q Consensus        88 ~~   89 (92)
                      .+
T Consensus       141 ~~  142 (142)
T cd07826         141 AS  142 (142)
T ss_pred             hC
Confidence            64

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=88.82  E-value=1.9  Score=28.65  Aligned_cols=46  Identities=20%  Similarity=0.379  Sum_probs=36.4

Q ss_pred             eeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477           13 IDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus        13 ~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      +++..+++.-++++|    |++-..++.++.|-+++ +|.|+--++|+-.+
T Consensus        68 ~~~~~~~I~~~l~~G----PFk~L~~~W~F~pl~~~-~ckV~f~ldfeF~s  113 (146)
T COG2867          68 LKPTARSIDMKLIDG----PFKYLKGGWQFTPLSED-ACKVEFFLDFEFKS  113 (146)
T ss_pred             ecCchhhhhhhhhcC----ChhhhcCceEEEECCCC-ceEEEEEEEeeehh
Confidence            445555777777777    66778899999997555 89999999999875

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=88.63  E-value=4.4  Score=25.50  Aligned_cols=72  Identities=15%  Similarity=0.123  Sum_probs=39.0

Q ss_pred             EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCC-ChhhHHHHHHHHHHHHHHHH
Q 039477            9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVP-DPTGKLQILIDVAKDIDAHL   87 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~-~~~~~~~~~~~~~k~ie~~l   87 (92)
                      ++.+++ .++.+.|+...++.     ....+++|.|.+ + +|.++.+..|........ ......+....++..|++||
T Consensus        66 ~v~e~~-p~~~l~~t~~~~~~-----~~~v~~~~~~~~-~-gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l  137 (139)
T cd08894          66 VFLEIE-PPERIVYDHGSGPP-----RFRLTVTFEEQG-G-KTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYL  137 (139)
T ss_pred             EEEEEc-CCCEEEEEeccCCC-----cEEEEEEEEECC-C-CEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            455564 45667776644321     145678888865 4 799888866432110000 00111234557788888877


Q ss_pred             h
Q 039477           88 L   88 (92)
Q Consensus        88 ~   88 (92)
                      .
T Consensus       138 ~  138 (139)
T cd08894         138 A  138 (139)
T ss_pred             h
Confidence            4

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=88.47  E-value=4.6  Score=25.57  Aligned_cols=41  Identities=15%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             CCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477           15 NENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus        15 ~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      +..+.+.+.. +|++  .   ...+++|.|.++  ||.|+++.+++..+
T Consensus        73 ~p~~~~~~~~-~g~~--~---~~~~~~~~~~~~--gt~vt~~~~~~~~~  113 (146)
T cd07824          73 EPLSLLEVRA-SGDL--E---GVGRWTLAPDGS--GTVVRYDWEVRTTK  113 (146)
T ss_pred             cCCcEEEEEE-EEee--e---EEEEEEEEEcCC--CEEEEEEEEEEcCH
Confidence            4566788874 5654  2   257788888643  79999999999754

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=87.39  E-value=4.1  Score=25.26  Aligned_cols=78  Identities=9%  Similarity=-0.006  Sum_probs=43.0

Q ss_pred             EEEEEeeCCCCEEEEEEEecc----c-ccceeEEEEEEEEEeeCCCCceEEEEEEE-EEEcCCCCC--ChhhHHHHHHHH
Q 039477            8 EIIEAIDNENYITNYKVIEGN----L-LELYKSFSSTVKVTPKENDDGSLVHWIFE-YEKLNEDVP--DPTGKLQILIDV   79 (92)
Q Consensus         8 Erl~~~D~~~~~~~y~i~eg~----~-~~~~~~~~~ti~v~p~~~g~~~~v~W~~~-ye~~~~~~~--~~~~~~~~~~~~   79 (92)
                      =++..++ .++.+.|+...+.    . ...-.....+++|.|.++  +|.++++-. |...+....  ......+....+
T Consensus        59 ~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~  135 (145)
T cd08898          59 VTVVEVD-PPRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIAG--GTLLTVTESGFDALPAERRAEAYRMNEGGWDEQ  135 (145)
T ss_pred             EEEEEeC-CCcEEEEEecCCCcccccccCCCCceEEEEEEEecCC--cEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHH
Confidence            3555554 5677777765432    1 001223457888888753  799999876 432211100  111223455678


Q ss_pred             HHHHHHHHh
Q 039477           80 AKDIDAHLL   88 (92)
Q Consensus        80 ~k~ie~~l~   88 (92)
                      +..|++||-
T Consensus       136 l~~L~~~le  144 (145)
T cd08898         136 LENLVAYVE  144 (145)
T ss_pred             HHHHHHHhc
Confidence            888888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=84.85  E-value=7.6  Score=24.45  Aligned_cols=74  Identities=22%  Similarity=0.217  Sum_probs=42.5

Q ss_pred             EEEEeeCCCCEEEEEE--EecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHH
Q 039477            9 IIEAIDNENYITNYKV--IEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAH   86 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i--~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~   86 (92)
                      ++.+++ ..+.+.|+-  -.++.  +...-..++.+.|.+ + +|.++.+-..-..++. ...+........++..|+++
T Consensus        67 ~~~~~~-p~~~l~~t~~~~~~~~--~~~~s~v~~~l~~~~-~-gT~l~~~~~~~~~~~~-~~~~~~~~GW~~~l~~L~~~  140 (143)
T cd08900          67 RYHDIV-PDERIVYTYTMHIGGT--LLSASLATVEFAPEG-G-GTRLTLTEQGAFLDGD-DDPAGREQGTAALLDNLAAE  140 (143)
T ss_pred             EEEEec-CCceEEEEEeeccCCc--cccceEEEEEEEECC-C-CEEEEEEEEEeccccc-chhhhHHHHHHHHHHHHHHH
Confidence            455565 455565554  22322  222244678888864 3 7999888775433221 12334455667788888888


Q ss_pred             Hh
Q 039477           87 LL   88 (92)
Q Consensus        87 l~   88 (92)
                      |-
T Consensus       141 l~  142 (143)
T cd08900         141 LE  142 (143)
T ss_pred             Hh
Confidence            74

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=84.84  E-value=7.7  Score=24.55  Aligned_cols=75  Identities=11%  Similarity=-0.059  Sum_probs=43.6

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHH
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAH   86 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~   86 (92)
                      .=++..++ .++.++|+..-.+-..+ .....++.+.+.+ + +|.++++...-+..   .......+....++..|++|
T Consensus        71 ~g~v~~v~-p~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~-~T~lt~~~~~~~~~---~~~~~~~~GW~~~l~~L~~~  143 (146)
T cd08895          71 GGRFLELV-PNERIVYTDVFDDPSLS-GEMTMTWTLSPVS-G-GTDVTIVQSGIPDG---IPPEDCELGWQESLANLAAL  143 (146)
T ss_pred             EEEEEEEc-CCCEEEEEEEecCCCCC-ceEEEEEEEEecC-C-CEEEEEEEeCCCch---hhhhHHHHHHHHHHHHHHHH
Confidence            33566675 45566666432211102 2336778887765 3 79999888743211   12334456677888899888


Q ss_pred             Hh
Q 039477           87 LL   88 (92)
Q Consensus        87 l~   88 (92)
                      |-
T Consensus       144 le  145 (146)
T cd08895         144 VE  145 (146)
T ss_pred             hc
Confidence            74

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=84.47  E-value=8.1  Score=24.46  Aligned_cols=76  Identities=8%  Similarity=-0.106  Sum_probs=39.9

Q ss_pred             EEEEEEeeCCCCEEEEE--EEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH-----HHHHHHH
Q 039477            7 KEIIEAIDNENYITNYK--VIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK-----LQILIDV   79 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~--i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~-----~~~~~~~   79 (92)
                      .=++.++|+ .+++.|+  +.++.....-..-..++++.|.+ + ||+++.+..+...    ...+..     .+....+
T Consensus        64 ~g~v~~i~p-~~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~-~-gT~Ltl~~~~~~~----~~~~~~~~~~~~~GW~~~  136 (146)
T cd08896          64 PGCFLEVVP-GERLVFTDALTPGWRPAEKPFMTAIITFEDEG-G-GTRYTARARHWTE----ADRKQHEEMGFHDGWGTA  136 (146)
T ss_pred             eEEEEEEeC-CCEEEEEEeecCCcCCCCCCcEEEEEEEEecC-C-cEEEEEEEEeCCH----HHHHHHHHcCHHHHHHHH
Confidence            345666764 4555555  32221110111135678888864 3 7998876543211    011111     3456688


Q ss_pred             HHHHHHHHhc
Q 039477           80 AKDIDAHLLS   89 (92)
Q Consensus        80 ~k~ie~~l~~   89 (92)
                      +..|++||.+
T Consensus       137 l~~L~~~l~~  146 (146)
T cd08896         137 ADQLAALAES  146 (146)
T ss_pred             HHHHHHHHhC
Confidence            8899998753

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=81.72  E-value=11  Score=23.94  Aligned_cols=77  Identities=9%  Similarity=-0.135  Sum_probs=40.8

Q ss_pred             EEEEeeCCCCEEEEEEEecc-c--ccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC-CCC---hhhHHHHHHHHHH
Q 039477            9 IIEAIDNENYITNYKVIEGN-L--LELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED-VPD---PTGKLQILIDVAK   81 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~eg~-~--~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~-~~~---~~~~~~~~~~~~k   81 (92)
                      ++.+++ ..+.++|+-.-++ .  .... .-..++++.|.+++ +|+++.+-..-..... ...   .....+....++.
T Consensus        65 ~v~~v~-p~~~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~-gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~  141 (149)
T cd08891          65 TVLAWE-PPSRLVFTWQINADWRPDPDK-ASEVEVRFEAVGAE-GTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLE  141 (149)
T ss_pred             EEEEEc-CCCEEEEEeccCCCcCcCCCC-ceEEEEEEEECCCC-CeEEEEEEecccccCcchhhHHHHhcccCcHHHHHH
Confidence            456665 4556666644111 1  1111 23577888886534 7998888776433210 001   1122334556788


Q ss_pred             HHHHHHh
Q 039477           82 DIDAHLL   88 (92)
Q Consensus        82 ~ie~~l~   88 (92)
                      .|+++|-
T Consensus       142 ~L~~~l~  148 (149)
T cd08891         142 RYAAAAE  148 (149)
T ss_pred             HHHHHhc
Confidence            8888763

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=81.56  E-value=12  Score=24.22  Aligned_cols=47  Identities=17%  Similarity=0.299  Sum_probs=34.9

Q ss_pred             eeCCCCEEEEE-EEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC
Q 039477           13 IDNENYITNYK-VIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED   65 (92)
Q Consensus        13 ~D~~~~~~~y~-i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~   65 (92)
                      +|...+++.+. ..+|    ++.....+.+|+|.++  ||.|++..+|+-.++.
T Consensus        69 ~~~~~~~i~~~~~~~~----p~~~m~~~W~f~~~~~--gT~V~~~~~~~~~~~~  116 (146)
T cd08860          69 LDPVNRTVRARRVETG----PFAYMNIRWEYTEVPE--GTRMRWVQDFEMKPGA  116 (146)
T ss_pred             ecCCCcEEEEEEecCC----CcceeeeeEEEEECCC--CEEEEEEEEEEECCCC
Confidence            56777777763 2222    5778888999999854  5999999999977543

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=80.28  E-value=11  Score=22.97  Aligned_cols=75  Identities=8%  Similarity=-0.139  Sum_probs=41.2

Q ss_pred             EEEEEeeCCCCEEEEEEEecccc--cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHH
Q 039477            8 EIIEAIDNENYITNYKVIEGNLL--ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDA   85 (92)
Q Consensus         8 Erl~~~D~~~~~~~y~i~eg~~~--~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~   85 (92)
                      =++.+++ .++.++|+...++..  ..-.....++.+.|.++  +|.++.+.+-...+.  .........+..+++.|.+
T Consensus        58 ~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~~--~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~  132 (136)
T cd08893          58 GEVLESD-PPRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVGD--VVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKT  132 (136)
T ss_pred             eEEEEec-CCCeEEEEEecCCCcccCCCCCEEEEEEEEecCC--cEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHH
Confidence            3455565 566666666533221  12234666777878643  687777766432221  1122334455677888888


Q ss_pred             HH
Q 039477           86 HL   87 (92)
Q Consensus        86 ~l   87 (92)
                      +|
T Consensus       133 ~~  134 (136)
T cd08893         133 LL  134 (136)
T ss_pred             Hh
Confidence            76

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=80.17  E-value=11  Score=22.96  Aligned_cols=61  Identities=20%  Similarity=0.328  Sum_probs=38.0

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCC-CCceEEEEEEEEEEcCCCCCChhhHHH
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKEN-DDGSLVHWIFEYEKLNEDVPDPTGKLQ   74 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~-g~~~~v~W~~~ye~~~~~~~~~~~~~~   74 (92)
                      ..++. .+...+ +.+..++|    +++.+..+.++.|.++ .+||.++++.+|+..... +.|..+..
T Consensus        54 ~~~~~-~~~~~~-~~~~~~~g----~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~-~~~~~~~~  115 (130)
T PF03364_consen   54 TSRVT-EDPPER-IRFEQISG----PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG-PLPGFLAR  115 (130)
T ss_dssp             EEEEE-EECTTT-EEEESSET----TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS-SSHHHHHH
T ss_pred             EEEEE-EEEeee-eeeeecCC----CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc-HhHHHHHH
Confidence            34444 233333 66676666    6888999999999875 115777788887764332 33544433

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	92
2i9y_A	166	Solution Structure Of Arabidopsis Thaliana Protein		5e-20
1vjh_A	122	Crystal Structure Of Gene Product Of At1g24000 From		5e-04

>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein At1g70830, A Member Of The Major Latex Protein Family Length = 166

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 66/91 (72%)
Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE IEA++ +  +  ++VIEG+L++ YKSF  T++VTPK    GS+VHW  EYE
Sbjct: 76  GEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYE 135
Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K++E+V  P   LQ  ++V+K+ID HLL+++
Sbjct: 136 KISEEVAHPETLLQFCVEVSKEIDEHLLAEE 166

>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From Arabidopsis Thaliana Length = 122

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 6   AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED 65
            K  IEA+D        +     + + +K+   ++ VTP    DGS V W F +EK+++D
Sbjct: 36  GKTEIEAVDLVKKTXTIQXSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKD 95
Query: 66  VPDPTGKLQILIDVAKDIDAHLLS 89
           + DP   +   +   K +D  +L+
Sbjct: 96  IDDPHSIIDESVKYFKKLDEAILN 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	92
1vjh_A	122	BET V I allergen family; structural genomics, cent	4e-31
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	2e-28
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	1e-17
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	1e-16
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	6e-15
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	2e-14
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	1e-13
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	2e-13
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	2e-13
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	2e-12
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	2e-12
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	9e-12
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	8e-08
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	5e-07
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	6e-07
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	3e-06
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	9e-06
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	2e-05
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	8e-04

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score =  105 bits (262), Expect = 4e-31
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query: 3   PQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL 62
            +  K  IEA+D        ++    + + +K+   ++ VTP    DGS V W F +EK+
Sbjct: 33  EKNGKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKV 92

Query: 63  NEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           ++D+ DP   +   +   K +D  +L+ +
Sbjct: 93  HKDIDDPHSIIDESVKYFKKLDEAILNFK 121

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score = 99.3 bits (247), Expect = 2e-28
 Identities = 42/91 (46%), Positives = 66/91 (72%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
           G  ++AKE IEA++ +  +  ++VIEG+L++ YKSF  T++VTPK    GS+VHW  EYE
Sbjct: 76  GEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYE 135

Query: 61  KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           K++E+V  P   LQ  ++V+K+ID HLL+++
Sbjct: 136 KISEEVAHPETLLQFCVEVSKEIDEHLLAEE 166

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score = 71.5 bits (175), Expect = 1e-17
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
            SP   +E I   D  ++    +VIEG  L +    + +T K++  E +D +LV+    Y
Sbjct: 62  VSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIE-EDKTLVNVKISY 120

Query: 60  EKLN--EDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
           +  +  E+   PT   Q  +   + ++ +L +  
Sbjct: 121 DHDSDIEEKVTPTKTSQSTLMYLRRLERYLSNGS 154

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score = 70.1 bits (171), Expect = 1e-16
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
             P   KE    +DNE+ +   ++IEG  L      +  T+ V P    D  ++    EY
Sbjct: 88  EFPHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTG-KDSCVIKSSTEY 146

Query: 60  EKLNEDV--PDPTGKLQILIDVAKDIDAHLLSQ 90
               E V   +P      L  +A  I   +L  
Sbjct: 147 HVKPEFVKIVEPLITTGPLAAMADAISKLVLEH 179

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 63.5 bits (154), Expect = 2e-14
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
           G        ++AID  N   NY +I G  L E  +  S   K+ P   D GS+     ++
Sbjct: 61  GHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGP-DGGSIGKINVKF 119

Query: 60  EKLNEDVPDPTGKL--QILIDVAKDIDAHLLS 89
               + + +          + + K I+ ++L+
Sbjct: 120 HTKGDVLSETVRDQAKFKGLGLFKAIEGYVLA 151

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 61.2 bits (148), Expect = 2e-13
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
                 K  I++ID ENY  +Y +IEG+ L +  +  S   K+       GS++     Y
Sbjct: 62  SQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASP-SGGSIIKSTSHY 120

Query: 60  EKLNEDVPDP---TGKLQILIDVAKDIDAHLLS 89
                            +   ++ K I+ +L  
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKG 153

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score = 60.8 bits (147), Expect = 2e-13
 Identities = 15/91 (16%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 3   PQIAKEIIEAIDNENYITNYKVIEGN-LLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK 61
            +  K+ ++ +D+ N+  +Y VIEG  + +  +  S+ +K+     + GS++    +Y  
Sbjct: 64  FKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATP-NGGSILKINNKYHT 122

Query: 62  LNEDVPDP---TGKLQILIDVAKDIDAHLLS 89
             +            ++   + + ++++LL+
Sbjct: 123 KGDHEVKAEQIKASKEMGETLLRAVESYLLA 153

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 58.5 bits (141), Expect = 2e-12
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
                  + ++AID  N   +Y ++ G  L E  +  S   KV       GS+     ++
Sbjct: 61  DKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGS-GGGSISKVTLKF 119

Query: 60  EKLNEDVPDP---TGKLQILIDVAKDIDAHLLS 89
               +           L       K I+ ++L+
Sbjct: 120 HTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLA 152

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 58.2 bits (140), Expect = 2e-12
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
           G  +     IEAID  N   NY ++ G  L +  +  S   K+     + GS+     + 
Sbjct: 62  GESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGA-NGGSIGKVTIKI 120

Query: 60  EKLNEDVPDPT---GKLQILIDVAKDIDAHLLS 89
           E   +  P+               K I+++L +
Sbjct: 121 ETKGDAQPNEEEGKAAKARGDAFFKAIESYLSA 153

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 56.6 bits (136), Expect = 9e-12
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 6/88 (6%)

Query: 6   AKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE 64
                + ID  N+   Y + EG++L +  +     VK+       GS       Y     
Sbjct: 74  MLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAV--GGGSKGKITVTYHPKPG 131

Query: 65  DVPDPT---GKLQILIDVAKDIDAHLLS 89
              +        +   +  K ++ +L +
Sbjct: 132 CTVNEEEVKIGEKKAYEFYKQVEEYLAA 159

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A Length = 146

 Score = 43.6 bits (102), Expect = 5e-07
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 7   KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
            E +E  +++     Y ++         ++ ST++V      + SLV W   + 
Sbjct: 57  IERLEVFNDKERYYTYSIMNAPFP--VTNYLSTIQVKEGTESNTSLVEWSGTFT 108

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160

 Score = 43.5 bits (102), Expect = 6e-07
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 7   KEIIEAIDNENYITNYKVIEGNL---LELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63
            + + A         Y + EG          ++   + + P   DD + V W   +E  +
Sbjct: 59  LDTLIAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118

Query: 64  EDVPD 68
            +  +
Sbjct: 119 TEAVE 123

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 6   AKEIIEAIDNENYITNYKVIEGNL-LELYKSFSSTVKVTPKEN-DDGSLVHWIFEYEKLN 63
           + E +E +D+++ + +++V+ G   L+ YKS +S  +   +++    ++V   +      
Sbjct: 96  STERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYT----- 150

Query: 64  EDVPD 68
            D+P+
Sbjct: 151 VDIPE 155

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score = 40.8 bits (95), Expect = 9e-06
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 6   AKEIIEAIDNENYITNYKVIEGNL-LELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE 64
           + E++E +D+  +I   +++ G+  L+ Y S + ++     +   G+L    F       
Sbjct: 88  STEVLEILDDNEHILGIRIVGGDHRLKNYSS-TISLHSETIDGKTGTLAIESFVV----- 141

Query: 65  DVPD 68
           DVP+
Sbjct: 142 DVPE 145

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 6   AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED 65
           ++E ++ +D++  +T + +  G      +++ S   V   E ++     W    E    D
Sbjct: 116 SRERLDLLDDDRRVTGFSITGGEH--RLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVD 173

Query: 66  VPDP 69
           VP+ 
Sbjct: 174 VPEG 177

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 6   AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED 65
           + E ++ +D+E  +T + +I G       ++ S   V   E ++      +  Y     D
Sbjct: 112 STERLDILDDERRVTGFSIIGGEH--RLTNYKSVTTVHRFEKENRIWTVVLESYVV---D 166

Query: 66  VPDP 69
           +P+ 
Sbjct: 167 MPEG 170

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.0 bits (82), Expect = 7e-04
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 25/107 (23%)

Query: 1   GSPQIAKEIIEAI-DNENYITNYKVIEGNLLELYKSFSSTVKV-TPKENDDGSLVHWIFE 58
            +P+    I E+I D      N+K +  +  +L     S++ V  P E            
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLNVLEPAEYRK--------M 374

Query: 59  YEKL---NEDVPDPTGKLQIL----------IDVAKDIDAHLLSQQP 92
           +++L         PT  L ++          + V K     L+ +QP
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 7   KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDV 66
            E +E +D+E +I   K+I G+     K++SS + V P+  +  +    I  +     DV
Sbjct: 113 TERLELLDDEEHILGIKIIGGDH--RLKNYSSILTVHPEIIEGRAGTMVIESFVV---DV 167

Query: 67  PD 68
           P 
Sbjct: 168 PQ 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	92
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	99.96
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	99.96
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	99.96
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	99.95
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	99.95
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.95
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	99.95
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	99.95
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	99.94
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	99.94
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	99.94
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	99.94
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	99.94
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.73
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.73
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.68
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.68
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.67
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.66
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.61
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.58
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.58
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.32
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	98.25
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	98.21
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	98.16
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	97.92
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	97.89
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	97.0
2pcs_A	162	Conserved protein; structural genomics, unknown fu	96.98
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	96.89
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	96.66
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	96.5
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	94.8
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	94.69
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	94.57
2il5_A	171	Hypothetical protein; structural genomics, APC2365	94.28
2leq_A	146	Uncharacterized protein; start domains, structural	93.89
3put_A	166	Hypothetical conserved protein; structural genomic	92.97
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	90.17
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	89.47
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	89.39
2lcg_A	142	Uncharacterized protein; start domain, structural	88.31
3qsz_A	189	STAR-related lipid transfer protein; structural ge	87.49
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	86.58
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	83.65
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	83.0
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	82.41

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=99.96  E-value=2.8e-28  Score=161.56  Aligned_cols=91  Identities=18%  Similarity=0.314  Sum_probs=82.9

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQIL   76 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~   76 (92)
                      |+++++||||+++|+++|+++|+++||+++ .+|++|+++++|+|.++| ||+|+|+++|++.++..++|+.+   ++.+
T Consensus        62 ~~~~~~kErl~~iD~~~~~~~y~iiegd~l~~~~~~y~~ti~v~p~~~g-gs~v~wt~~y~~~~~~~~~~~~~k~~~~~~  140 (159)
T 4a8u_A           62 FPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNG-GSILKINNKYHTKGDHEVKAEQIKASKEMG  140 (159)
T ss_dssp             SSCSEEEEEEEEEETTTTEEEEEEEEETTCBTTEEEEEEEEEEEECTTS-CEEEEEEEEEEESSSCCC-CHHHHHHHHHH
T ss_pred             CCccEEEEEEEEEccccCEEEEEEeeCCCCccceEEEEEEEEEEECCCC-ceEEEEEEEEEECCCCcCCHHHHHHHHHHH
Confidence            356799999999999999999999999987 779999999999998877 89999999999999988888765   7788


Q ss_pred             HHHHHHHHHHHhcCCC
Q 039477           77 IDVAKDIDAHLLSQQP   92 (92)
Q Consensus        77 ~~~~k~ie~~l~~~~~   92 (92)
                      .+|||+||+||++||.
T Consensus       141 ~~~~k~ie~yll~np~  156 (159)
T 4a8u_A          141 ETLLRAVESYLLAHSD  156 (159)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhChh
Confidence            9999999999999994

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=99.96  E-value=5.1e-28  Score=159.86  Aligned_cols=89  Identities=18%  Similarity=0.246  Sum_probs=82.3

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHH---H
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQI---L   76 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~---~   76 (92)
                      |+..++||||+++|+++|+++|+++||+++ .+|++|+++++|+|.++| ||+++|+++|++.++..++|+.+++.   +
T Consensus        62 ~~~~~~kErle~iD~~~~~~~y~iieGd~l~~~~~~~~~~ikv~p~~~g-gsvvk~t~~Y~~~~~~~~~ee~~~~~~~~~  140 (154)
T 2wql_A           62 SPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADG-GSITKTTAIFHTKGDAVVPEENIKFADAQN  140 (154)
T ss_dssp             CSCCEEEEEEEEEETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTTS-CEEEEEEEEEEESTTCCCCHHHHHHHHHHH
T ss_pred             CCceEEEEEEEEEehhhCEEEEEEEeccccccceEEEEEEEEEeeCCCC-cEEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999987 899999999999999888 99999999999999988888877554   6


Q ss_pred             HHHHHHHHHHHhcC
Q 039477           77 IDVAKDIDAHLLSQ   90 (92)
Q Consensus        77 ~~~~k~ie~~l~~~   90 (92)
                      .++||+||+||+||
T Consensus       141 ~~~~KaiEayLlan  154 (154)
T 2wql_A          141 TALFKAIEAYLIAN  154 (154)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HhHHHHHHHHHhcC
Confidence            79999999999998

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=99.95  E-value=1.5e-27  Score=159.20  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=82.1

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQIL   76 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~   76 (92)
                      |+++++||||+++|+++|+++|+++||+++ .+|++|+++++|+ .++| ||+|+|+++|++.++..++|+.+   ++.+
T Consensus        69 ~~~~~~kErl~~iD~~~~~~~Y~iieG~~l~~~~~~y~~~i~v~-~~~g-gs~vkwt~~y~~~~~~~~~~e~~k~~~~~~  146 (165)
T 3ie5_A           69 HPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLE-AVGG-GSKGKITVTYHPKPGCTVNEEEVKIGEKKA  146 (165)
T ss_dssp             SSCCEEEEEEEEEEGGGTEEEEEEEEEGGGTTTEEEEEEEEEEE-EETT-EEEEEEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CCCceEEEEEEEEchhcCEEEEEEecCCCCccceEEEEEEEEEE-eCCC-ceEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            356799999999999999999999999987 6899999999999 5555 89999999999999988888876   6888


Q ss_pred             HHHHHHHHHHHhcCCC
Q 039477           77 IDVAKDIDAHLLSQQP   92 (92)
Q Consensus        77 ~~~~k~ie~~l~~~~~   92 (92)
                      .+|||+||+||++||.
T Consensus       147 ~~~~K~ie~yllanp~  162 (165)
T 3ie5_A          147 YEFYKQVEEYLAANPE  162 (165)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhChh
Confidence            9999999999999994

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.95  E-value=2.7e-27  Score=150.89  Aligned_cols=84  Identities=26%  Similarity=0.476  Sum_probs=77.7

Q ss_pred             EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHh
Q 039477            9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLL   88 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~   88 (92)
                      ||+++|+++|+++|+++||+++.+|++|+++++|+|.++++||+|+|+++|++.++..++|+.+++.+.+|||+||+||+
T Consensus        39 ~ie~iD~~~~~~~y~iieGd~~~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yll  118 (122)
T 1vjh_A           39 EIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLDEAIL  118 (122)
T ss_dssp             EEEEEETTTTEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccCEEEEEEEEccccccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999878899999999999986333899999999999999999999999999999999999999


Q ss_pred             cCCC
Q 039477           89 SQQP   92 (92)
Q Consensus        89 ~~~~   92 (92)
                      +||.
T Consensus       119 ~~p~  122 (122)
T 1vjh_A          119 NFKE  122 (122)
T ss_dssp             HC--
T ss_pred             hCCC
Confidence            9983

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.95  E-value=2.4e-27  Score=157.83  Aligned_cols=91  Identities=46%  Similarity=0.847  Sum_probs=84.7

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVA   80 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~   80 (92)
                      |++.++||||+++|+++|+++|+++||+++.+|++|.++++|+|.++|+||+|+|+++|++.++..++|+.+++++.+|+
T Consensus        76 g~~~~~kErl~~iD~~~~~~~y~iieGd~~~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~~~p~~~~~~~~~~~  155 (166)
T 2i9y_A           76 GEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVS  155 (166)
T ss_dssp             TEEEEEEEEEEEEETTTTEEEEEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTTCCTHHHHHHHHHHH
T ss_pred             CCceEEEEEEEEEeccCcEEEEEEEeCCCCCCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999998778999999999999876558999999999999998888999999999999


Q ss_pred             HHHHHHHhcCC
Q 039477           81 KDIDAHLLSQQ   91 (92)
Q Consensus        81 k~ie~~l~~~~   91 (92)
                      |+||+||++||
T Consensus       156 k~ie~~l~~~~  166 (166)
T 2i9y_A          156 KEIDEHLLAEE  166 (166)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHhhCC
Confidence            99999999996

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=99.95  E-value=1.4e-26  Score=152.74  Aligned_cols=89  Identities=19%  Similarity=0.264  Sum_probs=82.4

Q ss_pred             ceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHHHH
Q 039477            3 PQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQILID   78 (92)
Q Consensus         3 ~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~~~   78 (92)
                      +.++||||+++|+++|+++|+++||+++ ..|++|.++++|+|.++| ||+|+|+++|++.++..++|+.+   ++.+.+
T Consensus        63 ~~~~kErl~~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~-gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~  141 (157)
T 1tw0_A           63 TSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGG-GSISKVTLKFHTKGDAPLSDAVRDDALAKGAG  141 (157)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEECTTSCTTEEEEEEEEEEEECSSS-SEEEEEEEEEEESTTCCCCHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEEeccCCEEEEEEEecCCCccceEEEEEEEEEEecCCC-CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999987 479999999999998776 89999999999999988888888   788899


Q ss_pred             HHHHHHHHHhcCCC
Q 039477           79 VAKDIDAHLLSQQP   92 (92)
Q Consensus        79 ~~k~ie~~l~~~~~   92 (92)
                      |+|+||+||++||.
T Consensus       142 ~~k~ie~yll~~p~  155 (157)
T 1tw0_A          142 FFKAIEGYVLANPA  155 (157)
T ss_dssp             HHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999999999984

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=99.94  E-value=2.1e-26  Score=151.90  Aligned_cols=89  Identities=22%  Similarity=0.223  Sum_probs=82.5

Q ss_pred             ceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHHHH
Q 039477            3 PQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQILID   78 (92)
Q Consensus         3 ~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~~~   78 (92)
                      +.++||||+++|+++|+++|+++||+++ ..|++|.++++|+|.++| ||+|+|+++|++.++..++|+.+   ++.+.+
T Consensus        64 ~~~~kErl~~~D~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~-gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~  142 (158)
T 2qim_A           64 SKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANG-GSIGKVTIKIETKGDAQPNEEEGKAAKARGDA  142 (158)
T ss_dssp             EEEEEEEEEEEEGGGTEEEEEEEEESSCCCSEEEEEEEEEEEECSTT-CEEEEEEEEEEESTTCCCCHHHHHHHHHHHHH
T ss_pred             ceeEEEEEEEEecCCCEEEEEEEeccCCccceEEEEEEEEEEecCCC-CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999987 479999999999998776 89999999999999988888888   788899


Q ss_pred             HHHHHHHHHhcCCC
Q 039477           79 VAKDIDAHLLSQQP   92 (92)
Q Consensus        79 ~~k~ie~~l~~~~~   92 (92)
                      |+|+||+||++||.
T Consensus       143 ~~k~ie~yll~~p~  156 (158)
T 2qim_A          143 FFKAIESYLSAHPD  156 (158)
T ss_dssp             HHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHhCcC
Confidence            99999999999984

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=99.94  E-value=2.3e-26  Score=151.83  Aligned_cols=89  Identities=22%  Similarity=0.279  Sum_probs=83.0

Q ss_pred             ceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHHHH
Q 039477            3 PQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQILID   78 (92)
Q Consensus         3 ~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~~~   78 (92)
                      +.++||||+++|+++|+++|++++|+++ .+|++|.++++|.|.++| ||+|+|+++|++.++..++|+.+   ++.+.+
T Consensus        64 ~~~~kErl~~~D~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~-gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~  142 (159)
T 1e09_A           64 YGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSG-GSIIKSTSHYHTKGNVEIKEEHVKAGKEKASN  142 (159)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEECCCTTTGGGEEEEEEEEEECCCTTS-SEEEEEEEEEEECSSCCCCHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEEcCCCCEEEEEEEecccCcccceEEEEEEEEEecCCC-CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999999987 589999999999998776 89999999999999988888887   788899


Q ss_pred             HHHHHHHHHhcCCC
Q 039477           79 VAKDIDAHLLSQQP   92 (92)
Q Consensus        79 ~~k~ie~~l~~~~~   92 (92)
                      |+|+||+||++||.
T Consensus       143 ~~k~ie~yll~~~~  156 (159)
T 1e09_A          143 LFKLIETYLKGHPD  156 (159)
T ss_dssp             HHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhChh
Confidence            99999999999984

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=99.94  E-value=1.2e-26  Score=152.97  Aligned_cols=87  Identities=21%  Similarity=0.242  Sum_probs=73.5

Q ss_pred             eeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHH--HHHHHHH
Q 039477            4 QIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKL--QILIDVA   80 (92)
Q Consensus         4 ~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~--~~~~~~~   80 (92)
                      +++||||+++|+++|+++|++++|+++ .+|++|+++++|+|.++| ||+|+|+++|++.++..+++..++  +.+.+||
T Consensus        65 ~~~kErl~~iD~~~~~~~y~iieg~~l~~~~~~~~~~i~v~p~~~g-gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~  143 (155)
T 2flh_A           65 SYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEED-KTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYL  143 (155)
T ss_dssp             CEEEEEEEEEETTTTEEEEEEEEEGGGGTTCSEEEEEEEEEEEETT-EEEEEEEEEEEC-------CCHHHHHHHHHHHH
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEeccccccCceEEEEEEEEEECCCC-CEEEEEEEEEEECCCCccChhHhhhHHHHHHHH
Confidence            799999999999999999999999987 789999999999999877 899999999999998877778888  8999999


Q ss_pred             HHHHHHHhcCC
Q 039477           81 KDIDAHLLSQQ   91 (92)
Q Consensus        81 k~ie~~l~~~~   91 (92)
                      |+||+||++||
T Consensus       144 k~ie~yll~~~  154 (155)
T 2flh_A          144 RRLERYLSNGS  154 (155)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHhhCC
Confidence            99999999997

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=99.94  E-value=2.6e-26  Score=151.09  Aligned_cols=88  Identities=22%  Similarity=0.278  Sum_probs=81.2

Q ss_pred             ceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHHHH
Q 039477            3 PQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQILID   78 (92)
Q Consensus         3 ~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~~~   78 (92)
                      +.++||||+++|+++|+++|+++||+++ ..|++|.++++|+|.+++ ||+|+|+++|++.++. ++|+.+   ++.+.+
T Consensus        63 ~~~~kErl~~~D~~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~~~-gs~v~w~~~y~~~~~~-~~~~~~~~~~~~~~~  140 (155)
T 1icx_A           63 TSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDG-GSIGKINVKFHTKGDV-LSETVRDQAKFKGLG  140 (155)
T ss_dssp             EEEEEEEEEEEEGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGGG-CEEEEEEEEEEESSSS-CCHHHHTTHHHHHHH
T ss_pred             ceeEEEEEEEEeccCCEEEEEEEecCCCccceEEEEEEEEEEecCCC-CEEEEEEEEEEECCCC-CCHHHHHHHHHHHHH
Confidence            3689999999999999999999999987 479999999999998776 8999999999999988 888777   888999


Q ss_pred             HHHHHHHHHhcCCC
Q 039477           79 VAKDIDAHLLSQQP   92 (92)
Q Consensus        79 ~~k~ie~~l~~~~~   92 (92)
                      |+|+||+||++||.
T Consensus       141 ~~k~ie~yll~~p~  154 (155)
T 1icx_A          141 LFKAIEGYVLAHPD  154 (155)
T ss_dssp             HHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999984

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=99.94  E-value=3.3e-26  Score=156.81  Aligned_cols=90  Identities=26%  Similarity=0.311  Sum_probs=80.9

Q ss_pred             CceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCC--ChhhHHHHHHH
Q 039477            2 SPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVP--DPTGKLQILID   78 (92)
Q Consensus         2 ~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~--~~~~~~~~~~~   78 (92)
                      +++++||||+++|+++|+++|+++||+++ .+|++|+++++|+|.++| ||+++|+++|++.++.++  ++...++.+.+
T Consensus        89 ~~~~vkErle~iDde~~~~sYsiieGd~l~~~~~~y~~tikv~p~~dg-gs~vkWt~~ye~~~~~~~~~e~~~~~~~~~~  167 (201)
T 2vq5_A           89 FPHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKD-SCVIKSSTEYHVKPEFVKIVEPLITTGPLAA  167 (201)
T ss_dssp             SSCEEEEEEEEEETTTTEEEEEEEEEGGGGTTEEEEEEEEEEEEEETT-EEEEEEEEEEEECGGGHHHHTTTCCSHHHHH
T ss_pred             cccEEEEEEEEEchhhCEEEEEEEecCccccceeEEEEEEEEEECCCC-CeEEEEEEEEEECCCCCCCChhHHHHHHHHH
Confidence            45799999999999999999999999987 789999999999999877 899999999999987622  44566889999


Q ss_pred             HHHHHHHHHhcCCC
Q 039477           79 VAKDIDAHLLSQQP   92 (92)
Q Consensus        79 ~~k~ie~~l~~~~~   92 (92)
                      |+|+||+||++||.
T Consensus       168 ~~KaiE~yLlanp~  181 (201)
T 2vq5_A          168 MADAISKLVLEHKS  181 (201)
T ss_dssp             HHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999999999983

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.73  E-value=2.7e-17  Score=111.10  Aligned_cols=63  Identities=19%  Similarity=0.370  Sum_probs=56.7

Q ss_pred             ceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeC-CCC-ceEEEEEEEEEEcCCCCC
Q 039477            3 PQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKE-NDD-GSLVHWIFEYEKLNEDVP   67 (92)
Q Consensus         3 ~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~-~g~-~~~v~W~~~ye~~~~~~~   67 (92)
                      ..++||||+++|+++|+|+|+|++|++  ++++|.++|+|.|.+ +|+ +|+|+|+++|++..+...
T Consensus        85 ~~~vkErL~~~D~~~~~~sY~Iieg~l--p~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~~~  149 (183)
T 3rt2_A           85 ATKSTEVLEILDDNEHILGIRIVGGDH--RLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTK  149 (183)
T ss_dssp             TCEEEEEEEEEETTTTEEEEEEEEESC--SCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCH
T ss_pred             cceEEEEEEEEECCCCEEEEEEecCCc--ceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCCCH
Confidence            478999999999999999999999998  899999999999987 664 799999999998765543

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.73  E-value=1.5e-17  Score=114.35  Aligned_cols=58  Identities=16%  Similarity=0.375  Sum_probs=49.3

Q ss_pred             CceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEE
Q 039477            2 SPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK   61 (92)
Q Consensus         2 ~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~   61 (92)
                      +..++||||+++|+++|+|+|+|++|++  ++++|.++|+|.|.+++++|.|+|+++|++
T Consensus       112 p~~~vkErL~~lDde~~~~sYsIieG~l--pv~~Y~sti~V~p~~~g~~t~V~Wt~~fes  169 (208)
T 3jrs_A          112 PANTSRERLDLLDDDRRVTGFSITGGEH--RLRNYKSVTTVHRFEKEEEEERIWTVVLES  169 (208)
T ss_dssp             SCCEEEEEEEEEETTTTEEEEEEEESSS--SCTTCEEEEEEEEEEC-----CEEEEEEEE
T ss_pred             ccceEEEEEEEEeccCCEEEEEEeeCCc--ceeeEEEEEEEEEccCCCccEEEEEEEEEE
Confidence            3478999999999999999999999998  899999999999976555899999999995

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.68  E-value=6e-16  Score=102.08  Aligned_cols=80  Identities=15%  Similarity=0.200  Sum_probs=62.1

Q ss_pred             eeEEEEEEEeeCCCCEEEEEEEecccccc-----eeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH-HHHHH
Q 039477            4 QIAKEIIEAIDNENYITNYKVIEGNLLEL-----YKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK-LQILI   77 (92)
Q Consensus         4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~-----~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~-~~~~~   77 (92)
                      .+++|||+++|+++|+++|++++|++  +     +++|.++++|.|.++++||+|+|+++|++.++   ..... ...+.
T Consensus        56 g~v~Erl~~~D~~~~~~sY~ii~g~l--~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~~---~~~~~~~~~~~  130 (160)
T 3p51_A           56 GEFLDTLIAYSEIERRIMYSMDEGPS--PVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAST---EAVEYMNTVYR  130 (160)
T ss_dssp             TTEEEEEEEEETTTTEEEEEEEECST--TSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESCS---HHHHHHHHHHH
T ss_pred             CEEEEEEEEEcCCCcEEEEEEecCCC--cccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCHH---HHHHHHHHHHH
Confidence            36899999999999999999999988  6     99999999999987334999999999999742   11122 23344


Q ss_pred             HHHHHHHHHHh
Q 039477           78 DVAKDIDAHLL   88 (92)
Q Consensus        78 ~~~k~ie~~l~   88 (92)
                      ..++.|.+.+-
T Consensus       131 ~~L~~Lk~~~e  141 (160)
T 3p51_A          131 SLLADLAAEFT  141 (160)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHh
Confidence            56666655543

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.68  E-value=8.7e-16  Score=99.62  Aligned_cols=81  Identities=17%  Similarity=0.288  Sum_probs=60.5

Q ss_pred             eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEe-eCCCCceEEEEEEEEEEcCCCCCChhhH-HHHHHHHHH
Q 039477            4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTP-KENDDGSLVHWIFEYEKLNEDVPDPTGK-LQILIDVAK   81 (92)
Q Consensus         4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p-~~~g~~~~v~W~~~ye~~~~~~~~~~~~-~~~~~~~~k   81 (92)
                      .+++|||+++|+++|+++|++++|++  ++++|.++++|.| .+++ ||+|+|+++|++.+...+..... ..++...++
T Consensus        54 ~~~~Erl~~~D~~~~~~~y~iv~g~~--~~~~~~~~~~v~p~~~~~-gt~v~w~~~~~p~g~~~~~~~~~~~~~~~~~L~  130 (146)
T 3f08_A           54 ETIIERLEVFNDKERYYTYSIMNAPF--PVTNYLSTIQVKEGTESN-TSLVEWSGTFTPVAVSDEEAINLVHGIYSDGLK  130 (146)
T ss_dssp             CEEEEEEEEEETTTTEEEEEEEECSS--SEEEEEEEEEEEECSSTT-CEEEEEEEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEEeCCCCEEEEEEecCCC--ceeEEEEEEEEEEecCCC-cEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999988  8999999999999 4555 89999999999843221111111 223335555


Q ss_pred             HHHHHH
Q 039477           82 DIDAHL   87 (92)
Q Consensus        82 ~ie~~l   87 (92)
                      .|.+.+
T Consensus       131 ~Lk~~~  136 (146)
T 3f08_A          131 ALQHAF  136 (146)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            555544

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.67  E-value=6.7e-16  Score=106.33  Aligned_cols=55  Identities=20%  Similarity=0.406  Sum_probs=50.9

Q ss_pred             CceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEE
Q 039477            2 SPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK   61 (92)
Q Consensus         2 ~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~   61 (92)
                      ++.+++|||+++|+++|+|+|+|++|++  ++++|.++|+|.|.++| +  |+|+++|+.
T Consensus       108 p~~~vkErL~~lDd~~~~~sYsIieg~l--pv~~Y~sti~V~p~~~g-g--V~Wt~~fes  162 (211)
T 3k3k_A          108 PANTSTERLDILDDERRVTGFSIIGGEH--RLTNYKSVTTVHRFEKE-N--RIWTVVLES  162 (211)
T ss_dssp             SCEEEEEEEEEEETTTTEEEEEEEEETT--GGGTCEEEEEEEEEEET-T--EEEEEEEEE
T ss_pred             ccceEEEEEEEEeccCCEEEEEEeecCc--ceeEEEEEEEEEECCCC-C--EEEEEEEEE
Confidence            4579999999999999999999999998  89999999999999776 4  999999995

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.66  E-value=1.6e-15  Score=102.92  Aligned_cols=63  Identities=14%  Similarity=0.254  Sum_probs=51.7

Q ss_pred             CceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEee----CCCCceEEEEEEEEEEcCCCC
Q 039477            2 SPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPK----ENDDGSLVHWIFEYEKLNEDV   66 (92)
Q Consensus         2 ~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~----~~g~~~~v~W~~~ye~~~~~~   66 (92)
                      ++.++||||+++|+++|+|+|+|++|++  ++++|.+++++.|.    .++++|+|+|+++|++..+.+
T Consensus        92 p~~~vkErL~~iD~~~~~~sY~iieG~~--~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~~  158 (190)
T 3kl1_A           92 PASTSTERLEFVDDDHRVLSFRVVGGEH--RLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNT  158 (190)
T ss_dssp             SCEEEEEEEEEEETTTTEEEEEEEEESS--SCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTCC
T ss_pred             ccceEEEEEEEEeccCCEEEEEEEecCC--ccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCCC
Confidence            4579999999999999999999999999  67777777777763    223489999999999665543

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.61  E-value=7.1e-15  Score=100.83  Aligned_cols=64  Identities=25%  Similarity=0.353  Sum_probs=56.3

Q ss_pred             CceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCC-C-CceEEEEEEEEEEcCCCCC
Q 039477            2 SPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKEN-D-DGSLVHWIFEYEKLNEDVP   67 (92)
Q Consensus         2 ~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~-g-~~~~v~W~~~ye~~~~~~~   67 (92)
                      ++.++||||+++|+++|+|+|+|++|++  +|++|.++|+|.|.++ | .+|++.|++.+++..+...
T Consensus       108 p~~~vkErL~~lDde~~~~sYsIieG~l--pv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~t~  173 (205)
T 3oqu_A          108 PATTSTERLELLDDEEHILGIKIIGGDH--RLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTK  173 (205)
T ss_dssp             SCSEEEEEEEEEETTTTEEEEEEEEESS--SCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTCCH
T ss_pred             ccceEEEEEEEEECCCCEEEEEEEecCc--ceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCCCH
Confidence            3478999999999999999999999998  8999999999999884 4 2799999999987766543

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.58  E-value=2.1e-14  Score=97.36  Aligned_cols=86  Identities=15%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             ceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeC---CC----CceEEEEEEEEEEcCCCCCC-hhhHHH
Q 039477            3 PQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKE---ND----DGSLVHWIFEYEKLNEDVPD-PTGKLQ   74 (92)
Q Consensus         3 ~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~---~g----~~~~v~W~~~ye~~~~~~~~-~~~~~~   74 (92)
                      ..+++|||+++|+++|+|+|+|++|++  ++++|.++++|.|.+   +|    ++|++.|++.+++..+.+.+ ...+.+
T Consensus        93 ~~~i~ErL~~lDde~~~~sY~Iieg~~--pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~t~e~~~~~v~  170 (189)
T 3oji_A           93 ASTSVEILEVLDEEKRILSFRVLGGEH--RLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVD  170 (189)
T ss_dssp             BSEEEEEEEEEETTTTEEEEEEEECSB--SSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CceEEEEEEEEeccCCEEEEEEEecCC--ccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCCCHHHHHHHHH
Confidence            368999999999999999999999999  899999999999864   33    36999999999876655432 222233


Q ss_pred             -HHHHHHHHHHHHHhcC
Q 039477           75 -ILIDVAKDIDAHLLSQ   90 (92)
Q Consensus        75 -~~~~~~k~ie~~l~~~   90 (92)
                       .+...+++|.+..-+.
T Consensus       171 ~v~~~gL~~L~~~~e~~  187 (189)
T 3oji_A          171 TVVKSNLQNLAVISTAS  187 (189)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence             3345666666654443

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.32  E-value=7e-12  Score=80.31  Aligned_cols=54  Identities=13%  Similarity=0.213  Sum_probs=49.9

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEE
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK   61 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~   61 (92)
                      +++|+|+.+|+.+++++|++++|++  ++++|.++++|.|.+++ +|.++|+++|++
T Consensus        60 ~~~e~i~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~l~~~~~~-gt~v~w~~~f~~  113 (151)
T 2le1_A           60 ELVERLVERDESARRLVYTMPDPPF--PITNHRAVLEVVPRDDR-HCTVVWTAMFDC  113 (151)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEECSS--SEEEEEEEEEEEESSSS-CEEEEEEEEEEE
T ss_pred             EEEEEEEEEeCCCCEEEEEEecCCC--CceeEEEEEEEEECCCC-cEEEEEEEEEEe
Confidence            7899999999999999999999987  89999999999996555 899999999997

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=98.25  E-value=6.8e-05  Score=48.74  Aligned_cols=48  Identities=8%  Similarity=0.259  Sum_probs=41.3

Q ss_pred             EeeCCCCEEEEEEE-ecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC
Q 039477           12 AIDNENYITNYKVI-EGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED   65 (92)
Q Consensus        12 ~~D~~~~~~~y~i~-eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~   65 (92)
                      .+|+..++++|+.+ +|    |++++.++.+|.|.++  ||.|+|..+|+..++.
T Consensus        70 ~~d~~~~~I~~~~~~~g----Pf~~l~g~W~f~p~~~--gt~V~~~~df~~~~~~  118 (159)
T 3tl1_A           70 VADPVTRTVRAQRVETG----PFQYMNIVWEYAETAE--GTVMRWTQDFAMKPDA  118 (159)
T ss_dssp             EEETTTTEEEEEESSCT----TEEEEEEEEEEEEETT--EEEEEEEEEEEECTTC
T ss_pred             EEcCCCCEEEEEEccCC----ChhhccCEEEEEECCC--CEEEEEEEEEEecCCC
Confidence            48999999999987 55    6899999999999865  6999999999987653

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=98.21  E-value=5.3e-05  Score=49.77  Aligned_cols=48  Identities=10%  Similarity=0.194  Sum_probs=40.1

Q ss_pred             EeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCC
Q 039477           12 AIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE   64 (92)
Q Consensus        12 ~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~   64 (92)
                      .+|+..++++|+.++++   |++.|.++.+|.|.++  ||.|+|+.+|+..++
T Consensus        70 ~~d~~~~~I~~~~l~~g---Pf~~~~g~W~f~p~~~--gt~V~~~~df~~~~~  117 (169)
T 3tvq_A           70 VPDKGSRTVRAHRVETG---PFAYMNLHWTYRAVAG--GTEMRWVQEFDMKPG  117 (169)
T ss_dssp             EEEGGGTEEEEEESSCT---TEEEEEEEEEEEEETT--EEEEEEEEEEEECTT
T ss_pred             EEcCCCcEEEEEEcCCC---ChhheeeEEEEEECCC--CEEEEEEEEEEecCC
Confidence            37899999999876442   6889999999999865  499999999998755

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=98.16  E-value=0.00013  Score=47.37  Aligned_cols=50  Identities=8%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             EeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCC
Q 039477           12 AIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE   64 (92)
Q Consensus        12 ~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~   64 (92)
                      .+|+..+++.|++++++.  +++.+..+.+|.|.+++ +|.|+|+.+|+..+.
T Consensus        70 ~~~~~~~~i~~~~~~~~g--pf~~~~g~w~f~~~~~~-~t~V~~~~~~~~~~~  119 (172)
T 3tfz_A           70 DLDPARRVIAYRQLETAP--IVGHMSGEWRAFTLDAE-RTQLVLTHDFVTRAA  119 (172)
T ss_dssp             EEETTTTEEEEEEEECCT--TEEEEEEEEEEEEEETT-EEEEEEEEEEEECCC
T ss_pred             EEeCCCCEEEEEEeeCCC--ChhhcEEEEEEEECCCC-cEEEEEEEEEEEcCh
Confidence            378889999999998665  78999999999998766 899999999997654

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=97.92  E-value=0.00088  Score=40.53  Aligned_cols=51  Identities=25%  Similarity=0.313  Sum_probs=39.5

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCC
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE   64 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~   64 (92)
                      ..++. .++.++.+.|++.+|++    ..+..+++|.|.++  ||.++|+.+|+..+.
T Consensus        63 ~~~~~-~~~~~~~i~~~~~~g~~----~~~~~~~~~~~~~~--gT~v~~~~~~~~~~~  113 (147)
T 2d4r_A           63 LEEEE-WDDENLRNRFFSPEGDF----DRYEGTWVFLPEGE--GTRVVLTLTYELTIP  113 (147)
T ss_dssp             EEEEE-EETTTTEEEEEEEEESC----SEEEEEEEEEECSS--SEEEEEEEEEECCCT
T ss_pred             EEEEE-EcCCCcEEEEEeccCCh----hheEEEEEEEECCC--CcEEEEEEEEecCCc
Confidence            34444 45788999999998854    56788999999764  599999999997653

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=97.89  E-value=0.00043  Score=44.53  Aligned_cols=47  Identities=17%  Similarity=0.154  Sum_probs=40.2

Q ss_pred             eeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477           13 IDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus        13 ~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      +|++++++.+++++|++   .++..++.+|.|.++| +|.|+|+++|+...
T Consensus        74 ~~~~~~~I~~~~~~g~~---~~~l~g~w~f~p~~~g-~t~V~~~~~~e~~~  120 (161)
T 3p9v_A           74 ADKEAGKITWSPIKGEG---NGVVSGSWTLSAKGDN-ATAVKFQTSAELTV  120 (161)
T ss_dssp             EETTTTEEEEEECTTST---TEEEEEEEEEEESSSS-CEEEEEEEEEEEEE
T ss_pred             EcCCCCEEEEEEecCcc---ceeEEEEEEEEECCCC-eEEEEEEEEEEEcC
Confidence            67778999999998865   3778889999998776 79999999999874

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=97.00  E-value=0.0045  Score=38.62  Aligned_cols=50  Identities=12%  Similarity=0.304  Sum_probs=40.0

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      .-|+. +|+.++++.+++++|    +++.+.++.+|.|.++  +|.|+++++|+..+
T Consensus        67 ~~~v~-~~~~~~~i~~~~~~G----~f~~~~g~w~f~~~~~--gt~v~~~~~~~~~~  116 (148)
T 1t17_A           67 ATRVR-RDKDARSIDVSLLYG----PFKRLNNGWRFMPEGD--ATRVEFVIEFAFKS  116 (148)
T ss_dssp             EEEEE-EETTTCEEEEEESST----TSSCEEEEEEEEEETT--EEEEEEEEEECCSC
T ss_pred             EEEEE-EcCCCcEEEEEECCC----ChhccEEEEEEEECCC--CeEEEEEEEEEECc
Confidence            44555 577777999999998    3567889999999865  49999999999763

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=96.98  E-value=0.026  Score=35.38  Aligned_cols=78  Identities=13%  Similarity=0.153  Sum_probs=46.6

Q ss_pred             EEEEeeCCCCEEEEEEEe-cccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH-----HHHHHHHHHH
Q 039477            9 IIEAIDNENYITNYKVIE-GNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK-----LQILIDVAKD   82 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~e-g~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~-----~~~~~~~~k~   82 (92)
                      ++..+|+. ++++++... |..  +......+++|.|.+++ +|.++|+++++..+.-......+     ...+..++++
T Consensus        66 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~  141 (162)
T 2pcs_A           66 EVTDIKPP-YHYKLLVNGEGGP--GFVNAEGVIDLTPINDE-CTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKK  141 (162)
T ss_dssp             EEEEEETT-TEEEEEEEEEETT--EEEEEEEEEEEEESSSS-EEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCC-cEEEEEEEecCCC--ccEEEEEEEEEEecCCC-cEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence            55556654 566666542 222  45567889999985555 89999999999765321112222     2233456677


Q ss_pred             HHHHHhcC
Q 039477           83 IDAHLLSQ   90 (92)
Q Consensus        83 ie~~l~~~   90 (92)
                      +.++|.+.
T Consensus       142 lk~~~e~~  149 (162)
T 2pcs_A          142 IQKEIAKS  149 (162)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHhccc
Confidence            77766543

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=96.89  E-value=0.011  Score=37.89  Aligned_cols=49  Identities=0%  Similarity=-0.107  Sum_probs=36.3

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEE
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE   60 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye   60 (92)
                      .+..+|+.+|+.. .++|...   +  ++..+..+.++.|.++| +|+|+|+.+|.
T Consensus        74 ~~~~~v~~~~p~~-~~~~~~~---~--p~~~~~~~h~l~p~~~g-gTrvt~~~~~~  122 (155)
T 3ijt_A           74 ELAFTLVEVRENQ-CFSDLTA---T--PFGNVLFEHEILENPDG-TISLRHSVSLT  122 (155)
T ss_dssp             CEEEEECCCBTTT-EEEEEEE---E--TTEEEEEEEEEEECTTS-CEEEEEEEEES
T ss_pred             cEEEEEEEEeCCc-EEEEEEe---c--CCeEEEEEEEEEEcCCC-cEEEEEEEEEE
Confidence            4677899887655 5888643   3  44466777788887666 89999999993

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=96.66  E-value=0.035  Score=34.99  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=36.7

Q ss_pred             EEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            6 AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         6 ~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      ..-++..+ ..++.+.|+..+|+.    ..+..+++|.|.+++++|.|+++++|++.+
T Consensus        62 ~~~~v~e~-~p~~~i~~~~~~g~~----~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~  114 (155)
T 3ggn_A           62 WEAELTAD-EPGKRIAWRSLPGAR----IENSGEVLFRPAPGARGTEVVVRLTYRPPG  114 (155)
T ss_dssp             EEEEEEEE-ETTTEEEEEECTTCS----SCEEEEEEEEECSSSSCEEEEEEEEEC---
T ss_pred             EEEEEEEe-cCCCEEEEEECCCCC----cceEEEEEEEECCCCCceEEEEEEEEECCC
Confidence            34455544 467889999998853    346778889887423389999999999865

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=96.50  E-value=0.063  Score=33.10  Aligned_cols=51  Identities=22%  Similarity=0.260  Sum_probs=33.9

Q ss_pred             EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      ++..+++ .+++.|+....+...+++ +..++++.|.+ + +|.++|+.+|+..+
T Consensus        75 ~~~~~~~-~~~i~~~~~~~~~~~~~~-~~~~~~l~~~~-~-gT~v~~~~~~~~~g  125 (157)
T 2ns9_A           75 SFEDLEK-PSKATVKGSGRGAGSTLD-FTLRFAVEPSG-G-GSRVSWVFEGNVGG  125 (157)
T ss_dssp             EEEEEET-TTEEEEEEEEECSSEEEE-EEEEEEEEEET-T-EEEEEEEEEEEEEE
T ss_pred             EEEecCC-CcEEEEEEEecCCCccEE-EEEEEEEEeCC-C-cEEEEEEEEEEECc
Confidence            4446664 567777653322111343 67899999976 4 89999999998654

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=94.80  E-value=0.35  Score=29.20  Aligned_cols=79  Identities=11%  Similarity=-0.057  Sum_probs=50.9

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDID   84 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie   84 (92)
                      ...-++..+++ ++.+.|+...++.. .-.....++++.|.+ + +|.++|+.++.+..   ............++..|.
T Consensus        66 ~~~~~v~~~~p-~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~-~-gT~l~~~~~~~~~~---~~~~~~~~gw~~~L~~L~  138 (147)
T 1z94_A           66 AFGGRYLELVP-GERIRYTDRFDDAG-LPGDMITTITLAPLS-C-GADLSIVQEGIPDA---IPPENCYLGWQQSLKQLA  138 (147)
T ss_dssp             EEEEEEEEEET-TTEEEEEEEESCCC----CEEEEEEEEEET-T-EEEEEEEEECCCTT---SCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEcC-CCEEEEEEEEeCCC-CCCcEEEEEEEEecC-C-CEEEEEEEEcCCch---hhHHHHHHHHHHHHHHHH
Confidence            45667888874 67888887655321 111356788888875 3 79999998875321   123344455667888888


Q ss_pred             HHHhcC
Q 039477           85 AHLLSQ   90 (92)
Q Consensus        85 ~~l~~~   90 (92)
                      ++|-+.
T Consensus       139 ~~le~~  144 (147)
T 1z94_A          139 ALVEPD  144 (147)
T ss_dssp             HHHSCC
T ss_pred             HHHHhh
Confidence            887654

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=94.69  E-value=0.3  Score=29.78  Aligned_cols=46  Identities=9%  Similarity=-0.000  Sum_probs=33.3

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEE
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK   61 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~   61 (92)
                      .-++..+++ .+.+.|+...+       ....+++|.|.++| +|+++++....+
T Consensus        60 ~~~v~e~~p-~~~l~~~~~~~-------~~~~~~~l~~~~~g-~T~l~~~~~~~~  105 (143)
T 1xn6_A           60 PCKVLEIDE-PNHLSFSWDTD-------GWVVSFDLKDLGDN-KTEFTLIHGGWK  105 (143)
T ss_dssp             CEEEEEEET-TTEEEEEETTT-------TEEEEEEEEEEETT-EEEEEEEEECCC
T ss_pred             eEEEEEEeC-CCEEEEEEeCC-------CEEEEEEEEECCCC-cEEEEEEEEccC
Confidence            457788876 66788887544       35678888898765 799998887443

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=94.57  E-value=0.51  Score=30.08  Aligned_cols=79  Identities=13%  Similarity=0.035  Sum_probs=47.2

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHH-----HHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKL-----QILIDV   79 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~-----~~~~~~   79 (92)
                      ...-++..+++ .+.+.|+...++....-.....+++|.|.+++ +|.++|+..|...    ...+...     ..+..+
T Consensus        84 ~~~~~v~e~~p-~~rl~~~~~~~~~~~~~~~~~v~~~l~~~~~g-gT~lt~~~~~~~~----~~~~~~~~~~~~~Gw~~~  157 (178)
T 1xuv_A           84 AFHGVNHDVTE-PERIISTFEFEGLPEKGHVILDTARFEALPGD-RTKLTSHSVFQTI----EDRDGMLQSGMEEGINDS  157 (178)
T ss_dssp             EEEEEEEEEET-TTEEEEEEEETTSSSSCCCEEEEEEEEEETTT-EEEEEEEEECSSH----HHHHHHHHTTHHHHHHHH
T ss_pred             EEEEEEEEEeC-CCEEEEEEEecCCCCCCCcEEEEEEEEEcCCC-CEEEEEEEEeCCH----HHHHHHHHHhHHHHHHHH
Confidence            35667788874 56778877544321001246778888898655 8999999885211    0112221     345567


Q ss_pred             HHHHHHHHhc
Q 039477           80 AKDIDAHLLS   89 (92)
Q Consensus        80 ~k~ie~~l~~   89 (92)
                      +..|.++|-+
T Consensus       158 L~~Lk~~le~  167 (178)
T 1xuv_A          158 YERLDELLEK  167 (178)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777777643

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=94.28  E-value=0.56  Score=29.39  Aligned_cols=81  Identities=9%  Similarity=0.010  Sum_probs=48.6

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCC-CCC----------ChhhHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE-DVP----------DPTGKL   73 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~-~~~----------~~~~~~   73 (92)
                      ...-++..++ ..+.+.|+...++.  +-.....++++.|.++| +|.++++.+..+..+ ...          ..+...
T Consensus        76 ~~~~~v~e~~-p~~rl~~~~~~~~~--~~~~~~~~~~l~~~~~g-~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (171)
T 2il5_A           76 VIEGIYESLV-MDEYVKMTIGMPGL--SETQDVIEVEFFERETG-GTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMV  151 (171)
T ss_dssp             EEEEEEEEEE-TTTEEEEEESCC----CCCCEEEEEEEEECSSS-SEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEc-CCCEEEEEEEecCC--CCCcEEEEEEEEECCCC-CEEEEEEEEeccCcccccccchhccchhHHHHHHH
Confidence            3556778786 56778888765443  22246778888898765 799999987544311 000          111223


Q ss_pred             HHHHHHHHHHHHHHhc
Q 039477           74 QILIDVAKDIDAHLLS   89 (92)
Q Consensus        74 ~~~~~~~k~ie~~l~~   89 (92)
                      ..+..++..|.++|-+
T Consensus       152 ~Gw~~~L~~L~~~le~  167 (171)
T 2il5_A          152 HGFELMFDKMYHVIET  167 (171)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            3445677888887754

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=93.89  E-value=0.57  Score=28.05  Aligned_cols=79  Identities=11%  Similarity=0.050  Sum_probs=47.2

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEec--ccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIEG--NLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAK   81 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg--~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k   81 (92)
                      .+.-++..+++ ++.+.|+....  ++. .+-.....+++|.|.++  +|.++|+.+..+..   .........+..++.
T Consensus        61 ~~~~~v~~~~p-~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~--gT~l~~~~~~~~~~---~~~~~~~~gw~~~l~  134 (146)
T 2leq_A           61 EDKGTILQFNE-RSILQYSHFSPLTGKPDLPENYHVVTITLTALKK--GVEVELTQDNNETE---KEQKHSEDNWNTMLE  134 (146)
T ss_dssp             EEEEEEEEEET-TTEEEEECBCGGGCCCSCGGGSCEEEEEEEECSS--CEEEEEEEEEESSH---HHHHHHHHHHHHHHH
T ss_pred             cccEEEEEEcC-CCEEEEEEccCccCCCCCCCCceEEEEEEEEcCC--CeEEEEEEecCCch---hhHhhHHhhHHHHHH
Confidence            45677888875 67788877532  110 01224677888888743  79999997644321   112222344556777


Q ss_pred             HHHHHHhc
Q 039477           82 DIDAHLLS   89 (92)
Q Consensus        82 ~ie~~l~~   89 (92)
                      .|.++|-+
T Consensus       135 ~Lk~~le~  142 (146)
T 2leq_A          135 GLKKFLEN  142 (146)
T ss_dssp             HHHHHHGG
T ss_pred             HHHHHHhc
Confidence            88777754

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=92.97  E-value=1.1  Score=28.39  Aligned_cols=81  Identities=14%  Similarity=0.011  Sum_probs=51.4

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEe--cccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIE--GNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKD   82 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~e--g~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~   82 (92)
                      .+.-++.++++ .+.+.|+..-  ++.  +...-..+++|.|.+ + +|.++.+-..-..++. .......+....++..
T Consensus        72 ~~~g~v~ev~p-~~rlv~t~~~~~~~~--~~~~s~vt~~l~~~~-~-gT~ltl~~~~~~~~~~-~~~~~~~~GW~~~L~~  145 (166)
T 3put_A           72 AYDARYIDIVP-DTRIIYAYEMKLGQT--RISASLVTVAFDVEP-S-GTRMVFTEQVVFLDGY-GDNGARLQGTEIGLDN  145 (166)
T ss_dssp             EEEEEEEEEET-TTEEEEEEEEEETTE--EEEEEEEEEEEEECS-S-SEEEEEEEEEEEETTC-CCTTHHHHHHHHHHHH
T ss_pred             EEEEEEEEEcC-CcEEEEEEEecCCCC--CCCceEEEEEEEECC-C-CEEEEEEEEecCccch-hhHHHHHHHHHHHHHH
Confidence            35667888875 5556666542  222  333456788888875 3 7999999887644321 2334555667778889


Q ss_pred             HHHHHhcCC
Q 039477           83 IDAHLLSQQ   91 (92)
Q Consensus        83 ie~~l~~~~   91 (92)
                      |++||-...
T Consensus       146 L~~~le~~~  154 (166)
T 3put_A          146 LELFLVRET  154 (166)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHhcCC
Confidence            998886543

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=90.17  E-value=2.2  Score=26.55  Aligned_cols=79  Identities=13%  Similarity=0.103  Sum_probs=49.3

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEe--cccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIE--GNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKD   82 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~e--g~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~   82 (92)
                      .+.=++.++++ .+.+.|+..-  .+.  +...-..+++|.|.++  ||.++++...-..++. ...+...+....++..
T Consensus        71 ~~~g~v~e~~p-~~rl~~~~~~~~~~~--~~~~s~v~~~l~~~~~--gT~lt~~~~~~~~~~~-~~~~~~~~GW~~~L~~  144 (161)
T 3rd6_A           71 RLDAQFQDIVP-DQRIVFSYRMAIGPQ--PMSASLTTVELTPSGD--GTRLTYTEQGAFFDGV-DSAKGREEGTRGLLEA  144 (161)
T ss_dssp             EEEEEEEEEET-TTEEEEEEEEEETTE--EEEEEEEEEEEEEETT--EEEEEEEEEEEEETTC-CCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEcC-CCEEEEEEEecCCCC--CCCceEEEEEEEECCC--CEEEEEEEEecCcchh-hhHHHHHHHHHHHHHH
Confidence            45667788875 4556666542  222  3344567888888753  7999999887543321 2344555666778888


Q ss_pred             HHHHHhc
Q 039477           83 IDAHLLS   89 (92)
Q Consensus        83 ie~~l~~   89 (92)
                      |++||..
T Consensus       145 L~~~le~  151 (161)
T 3rd6_A          145 LAAELQK  151 (161)
T ss_dssp             HHHHC--
T ss_pred             HHHHHhh
Confidence            8887743

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=89.47  E-value=1.1  Score=27.83  Aligned_cols=78  Identities=6%  Similarity=-0.086  Sum_probs=45.5

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHH
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDA   85 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~   85 (92)
                      .-++.++++ ++.+.|+...++.. .+-.....+++|.|.++  +|.++|+.+-.+.   ....+.....+..++..|.+
T Consensus        63 ~~~v~e~~p-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--gT~l~~~~~~~~~---~~~~~~~~~gw~~~L~~Lk~  136 (160)
T 2lak_A           63 RGSFREVVP-VHRLAYSFGWDGSEVVPPGSSLVEIDLIEQGG--GTLLRLTHSGLPS---AEQCAGHEEGWAHYLGRLTE  136 (160)
T ss_dssp             SCCEEEEET-TTEEEECCCCCSSSCCCTTSCEEEEEEEECSS--SEEEEEEEECCCS---HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcC-CCEEEEEEEecCCCCCCCCcEEEEEEEEECCC--CEEEEEEEeCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence            346777765 66788876543210 01224677888888753  7999998762111   00122223455577788888


Q ss_pred             HHhcC
Q 039477           86 HLLSQ   90 (92)
Q Consensus        86 ~l~~~   90 (92)
                      +|-+.
T Consensus       137 ~le~~  141 (160)
T 2lak_A          137 VAAGR  141 (160)
T ss_dssp             HHHCS
T ss_pred             HHhcC
Confidence            87654

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=89.39  E-value=2.6  Score=26.24  Aligned_cols=78  Identities=13%  Similarity=0.023  Sum_probs=48.9

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEe--cccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIE--GNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKD   82 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~e--g~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~   82 (92)
                      .+.=++.++++ .+.+.|+..-  .+.  +...-..+++|.|.++  ||+++++-..-..++ ....+...+....++..
T Consensus        72 ~~~g~v~e~~p-~~rl~~~~~~~~~~~--~~~~s~v~~~l~~~~~--gT~lt~~~~~~~~~~-~~~~~~~~~GW~~~L~~  145 (162)
T 3q64_A           72 VYTATYQDIVP-DQRIVYSYDMLFGET--RISVSLATIQLFAEGE--GTRLVLTEQGAFLDG-HDTPSTREHGTGVLLDL  145 (162)
T ss_dssp             EEEEEEEEEET-TTEEEEEEEEEETTE--EEEEEEEEEEEEEETT--EEEEEEEEEEEEETT-SSCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEcC-CCEEEEEEEecCCCC--CCCceEEEEEEEEcCC--CEEEEEEEEecCccc-hhHHHHHHHHHHHHHHH
Confidence            45667788864 5566666542  222  2344567888888754  799999988654332 12344555666677777


Q ss_pred             HHHHHh
Q 039477           83 IDAHLL   88 (92)
Q Consensus        83 ie~~l~   88 (92)
                      |++||.
T Consensus       146 L~~~le  151 (162)
T 3q64_A          146 LDAFLD  151 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            877764

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=88.31  E-value=2.9  Score=25.28  Aligned_cols=70  Identities=14%  Similarity=0.022  Sum_probs=45.4

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDID   84 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie   84 (92)
                      .+.-++..+++ .+.+.|+.-      +   ...++++.|.+ + +|.++++..+.    .....+........++..|+
T Consensus        65 ~~~~~v~~~~p-~~~l~~~~~------g---~~~~~~l~~~~-~-gT~l~~~~~~~----~~~~~~~~~~Gw~~~L~~L~  128 (142)
T 2lcg_A           65 DFAGTYTKVVE-NKRIEYAFG------D---RTAKVEFLEAP-Q-GVTVRVSFVAE----TEYPVEQQQQGWQAILNNFK  128 (142)
T ss_dssp             EEEEEEEEEET-TTEEEEEET------T---EEEEEEEEEET-T-EEEEEEEEECC----SSSCHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEEcC-CCEEEEEcC------C---CEEEEEEEEcC-C-CEEEEEEEecC----CHHHHHHHHHHHHHHHHHHH
Confidence            34556777764 667777751      2   56778888875 3 79999987752    11234444555667788888


Q ss_pred             HHHhcC
Q 039477           85 AHLLSQ   90 (92)
Q Consensus        85 ~~l~~~   90 (92)
                      ++|-..
T Consensus       129 ~~le~~  134 (142)
T 2lcg_A          129 RHVESH  134 (142)
T ss_dssp             HHHHHS
T ss_pred             HHHHHH
Confidence            887654

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=87.49  E-value=1.7  Score=27.71  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=36.6

Q ss_pred             eeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH-----HHHHHHHHHHHHHHHhc
Q 039477           33 YKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK-----LQILIDVAKDIDAHLLS   89 (92)
Q Consensus        33 ~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~-----~~~~~~~~k~ie~~l~~   89 (92)
                      ...+.+...+.| +++ +|.+.+....++.+. .  |..+     ......++++|.+++.+
T Consensus       123 ~~~~~~~~~i~p-~~~-~t~vt~~~~~dp~G~-i--P~~lvn~~~~~~~~~~l~~L~k~~~~  179 (189)
T 3qsz_A          123 IPRAKGQWTLVP-DAD-GVDVTYQMHASPGGS-I--PSWLANQTVVETPFGTLKALRSHLRQ  179 (189)
T ss_dssp             CCCEEEEEEEEE-CSS-SEEEEEEEEECSCSS-S--CHHHHHHTTTHHHHHHHHHHHHHHTC
T ss_pred             eeEeeEEEEEEE-CCC-eEEEEEEEEeCCCCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            567888899999 665 899999999998753 2  3333     33445677777776653

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=86.58  E-value=3.6  Score=24.59  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=40.8

Q ss_pred             EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChh---hHHHHHHHHHHHHHH
Q 039477            9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPT---GKLQILIDVAKDIDA   85 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~---~~~~~~~~~~k~ie~   85 (92)
                      ++..+++ ++.+.|+..+|         ..++++.|.+ + +|.++++-...+..    +..   ........++..|.+
T Consensus        58 ~v~~~~p-~~~l~~~~~~g---------~~~~~l~~~~-~-gT~l~~~~~~~~~~----~~~~~~~~~~GW~~~l~~L~~  121 (135)
T 3q6a_A           58 NIERVED-NQLIAFTWGAH---------PITIQFEESE-A-GTVVTTTEKDFDTQ----DVKQLLGQKEGWVYMLSCLKV  121 (135)
T ss_dssp             EEEEEET-TTEEEEEETTE---------EEEEEEEEET-T-EEEEEEEECCCCSS----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcC-CCEEEEEEcCC---------eEEEEEEECC-C-CEEEEEEEcCCCcc----hHHHHhhchhCHHHHHHHHHH
Confidence            5666654 46677776532         6788888864 3 79998885532211    112   234455677888888


Q ss_pred             HHhcC
Q 039477           86 HLLSQ   90 (92)
Q Consensus        86 ~l~~~   90 (92)
                      ||-..
T Consensus       122 ~le~g  126 (135)
T 3q6a_A          122 YLEHG  126 (135)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            87653

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=83.65  E-value=5.4  Score=24.90  Aligned_cols=75  Identities=11%  Similarity=0.029  Sum_probs=45.2

Q ss_pred             eEEEEEEEeeCCCCEEEEEEE--ecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhh-----HHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVI--EGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTG-----KLQILI   77 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~--eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~-----~~~~~~   77 (92)
                      .+.-++..+++ .+.+.|+..  ++..  + ..-..+++|.|.++  ||.++++-.|..    ....+.     ..+...
T Consensus        75 ~~~g~v~e~~p-~~rl~~t~~~~~~~~--~-~~s~vt~~l~~~~~--gT~l~l~~~~~~----~~~~~~~~~~~~~~GW~  144 (164)
T 3pu2_A           75 GLTGRVILAEP-PHRLIHSELYDEDWT--G-GETLVTLQLLPVEG--GTELAMAVDYAT----PEARDAVAASAMATEME  144 (164)
T ss_dssp             EEEEEEEEEET-TTEEEEEEBCC---C--C-SCEEEEEEEEEETT--EEEEEEEEECSS----TTHHHHHHTSTHHHHHH
T ss_pred             EEEEEEEEEcC-CCEEEEEEeccCCCC--C-CCEEEEEEEEEcCC--CEEEEEEEEeCC----HHHHHHHHHhhHHHHHH
Confidence            45567777764 566777664  2112  1 12567888888753  799999888531    111221     234566


Q ss_pred             HHHHHHHHHHhc
Q 039477           78 DVAKDIDAHLLS   89 (92)
Q Consensus        78 ~~~k~ie~~l~~   89 (92)
                      .++..|+++|.+
T Consensus       145 ~~L~~L~~~l~~  156 (164)
T 3pu2_A          145 EAYRHLDVMLAA  156 (164)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            788888888865

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=83.00  E-value=5.9  Score=24.06  Aligned_cols=70  Identities=9%  Similarity=0.053  Sum_probs=43.4

Q ss_pred             EEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHH
Q 039477            6 AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDA   85 (92)
Q Consensus         6 ~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~   85 (92)
                      +.-++..+++ .+.+.|+.. |       ....+++|.|.+ + +|.++.+..+    ......+........++..|++
T Consensus        67 ~~g~v~e~~p-~~~l~~~~~-g-------~~~v~~~l~~~~-~-gT~l~~~~~~----~~~~~~~~~~~Gw~~~L~~L~~  131 (144)
T 2l8o_A           67 FGGVYDQVKT-NDLIEYTIG-D-------GRKVRIVFTHTG-D-TTNIVESFDP----EETNPRELQQSGWQAILNSFKS  131 (144)
T ss_dssp             EEEEEEEEET-TTEEEEEET-T-------CCEEEEEEEECS-S-SEEEEEEECC----CSSSCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEeC-CCEEEEEeC-C-------CeEEEEEEEEcC-C-CEEEEEEEeC----CCHHHHHHHHHHHHHHHHHHHH
Confidence            4456666764 566777742 2       246678888865 4 7998888665    1112334444556677888888


Q ss_pred             HHhcC
Q 039477           86 HLLSQ   90 (92)
Q Consensus        86 ~l~~~   90 (92)
                      +|-..
T Consensus       132 ~le~~  136 (144)
T 2l8o_A          132 YTENN  136 (144)
T ss_dssp             HHGGG
T ss_pred             HHHhH
Confidence            87653

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=82.41  E-value=7.1  Score=24.55  Aligned_cols=79  Identities=14%  Similarity=0.014  Sum_probs=46.3

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEe----cccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhh-----HHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIE----GNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTG-----KLQI   75 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~e----g~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~-----~~~~   75 (92)
                      .+.-++..+++ .+.+.|+..-    |........-..+++|.|.+ + ||+++.+..|...    ...+.     ..+.
T Consensus        75 ~~~g~~~ev~p-~~rlv~t~~~~~~~g~p~~~~~~s~vt~~l~~~~-~-gT~lt~~~~~~~~----~~~~~~~~~g~~~G  147 (168)
T 3uid_A           75 AGYWEITAVDE-PHSFSFLDGFADEDFNPNTDLPVSTNVYTFTEHD-G-GTRATYVGTYASA----EALQQVLDMGVIEG  147 (168)
T ss_dssp             EEEEEEEEEET-TTEEEEEEEEECTTSCBCSSCCCEEEEEEEEEET-T-EEEEEEEEECSCH----HHHHHHHHTTHHHH
T ss_pred             eeEEEEEEEeC-CcEEEEEEeeccCCCCcCCCCCcEEEEEEEEECC-C-CEEEEEEEecCCH----HHHHHHHHhcHHHH
Confidence            35667788875 5556666532    21211112356788888875 4 7999998643211    11121     2345


Q ss_pred             HHHHHHHHHHHHhcC
Q 039477           76 LIDVAKDIDAHLLSQ   90 (92)
Q Consensus        76 ~~~~~k~ie~~l~~~   90 (92)
                      ...++..|++||.+.
T Consensus       148 W~~~L~~L~~~l~~~  162 (168)
T 3uid_A          148 ASSAINQIDALLTAT  162 (168)
T ss_dssp             HHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            567889999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	92
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	5e-30
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	1e-16
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	2e-16
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	5e-16
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	1e-15
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	9e-15
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	7e-13
d3cnwa1	138	d.129.3.8 (A:3-140) Uncharacterized protein XoxI {	7e-06

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  100 bits (252), Expect = 5e-30
 Identities = 23/84 (27%), Positives = 42/84 (50%)

Query: 6   AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED 65
            K  IEA+D        ++    + + +K+   ++ VTP    DGS V W F +EK+++D
Sbjct: 36  GKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKD 95

Query: 66  VPDPTGKLQILIDVAKDIDAHLLS 89
           + DP   +   +   K +D  +L+
Sbjct: 96  IDDPHSIIDESVKYFKKLDEAILN 119

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 67.6 bits (165), Expect = 1e-16
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGN-LLELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
                 K  I++ID ENY  +Y +IEG+ L +  +  S   K+       GS++     Y
Sbjct: 62  SQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASP-SGGSIIKSTSHY 120

Query: 60  EKLNEDVPDP---TGKLQILIDVAKDIDAHLLS 89
                            +   ++ K I+ +L  
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKG 153

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 66.8 bits (163), Expect = 2e-16
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGN-LLELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
           G        I+ ++ E    +Y VI+G+ LL   +S  + V + P   D GS+      +
Sbjct: 61  GPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTA-DGGSICKTTAIF 119

Query: 60  EKLNEDVPDP---TGKLQILIDVAKDIDAHLLS 89
               + V          +    + K ++A+L++
Sbjct: 120 HTKGDAVVPEENIKYANEQNTALFKALEAYLIA 152

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 66.5 bits (162), Expect = 5e-16
 Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGN-LLELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
              +  K+ ++ +D+ N+  NY VIEG  + +  +  S+ +K+     D G ++    +Y
Sbjct: 62  FPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATP-DGGCVLKISNKY 120

Query: 60  EKLNEDVPDP---TGKLQILIDVAKDIDAHLLS 89
                            ++   + + ++++LL+
Sbjct: 121 HTKGNHEVKAEQVKASKEMGETLLRAVESYLLA 153

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 65.3 bits (159), Expect = 1e-15
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGN-LLELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
           G        ++AID  N   NY +I G  L E  +  S   K+ P   D GS+     ++
Sbjct: 61  GHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGP-DGGSIGKINVKF 119

Query: 60  EKLNEDVPDPTGK--LQILIDVAKDIDAHLLS 89
               + + +          + + K I+ ++L+
Sbjct: 120 HTKGDVLSETVRDQAKFKGLGLFKAIEGYVLA 151

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 63.0 bits (153), Expect = 9e-15
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGN-LLELYKSFSSTVKVTPKENDDGSLVHWIFEY 59
           G  +     IEA+D  N   NY ++ G  L +  +  S   K+     + GS+     + 
Sbjct: 61  GETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGA-NGGSIGKVTIKI 119

Query: 60  EKLNEDVPDP---TGKLQILIDVAKDIDAHLLS 89
           E   +  P+               K I+ +L +
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSA 152

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 58.0 bits (140), Expect = 7e-13
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLEL-YKSFSSTVKVTPKENDDGSLVHWIFEY 59
                  + ++AID  N   +Y ++ G  L    +  S   KV       GS+     ++
Sbjct: 61  DKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGS-GGGSISKVTLKF 119

Query: 60  EKLNEDVPDP 69
               +     
Sbjct: 120 HTKGDAPLSD 129

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

 Score = 39.4 bits (91), Expect = 7e-06
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 1   GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
               I + +    D E Y T Y ++         ++ ST++V      + SLV W   + 
Sbjct: 52  DGDTIIERLEVFNDKERYYT-YSIMNAPFP--VTNYLSTIQVKEGTESNTSLVEWSGTFT 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	92
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.96
d1fm4a_	159	Major tree pollen allergen {European white birch (	99.96
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	99.96
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	99.96
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	99.95
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	99.95
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	99.91
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.63
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	98.02
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	96.41
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	95.77
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	95.63
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	95.5
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	93.57
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	93.11
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	91.05
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	88.58
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	86.07
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	84.68

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2e-29  Score=159.32  Aligned_cols=86  Identities=27%  Similarity=0.480  Sum_probs=82.4

Q ss_pred             eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHH
Q 039477            4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDI   83 (92)
Q Consensus         4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~i   83 (92)
                      +..|||++++|++|++++|+++||+++..|++|+++++|+|.++|+||+++|+++|++.++..++|+.+++++.+|+|+|
T Consensus        34 ~~~KerVe~vD~en~sity~vieGdvl~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~~e~~~~~~K~i  113 (120)
T d1vjha_          34 KNGKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKL  113 (120)
T ss_dssp             TTCEEEEEEEETTTTEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHHHHHHHHHHH
T ss_pred             cccEEEEEEEcCCCCEEEEEEEeeccccceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999889999999999999988879999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 039477           84 DAHLLS   89 (92)
Q Consensus        84 e~~l~~   89 (92)
                      |+|||+
T Consensus       114 d~yLL~  119 (120)
T d1vjha_         114 DEAILN  119 (120)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999996

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=99.96  E-value=6.9e-29  Score=163.20  Aligned_cols=91  Identities=16%  Similarity=0.306  Sum_probs=83.6

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQIL   76 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~   76 (92)
                      |+.+++||||+++|+++|+++|+++|||++ ..|++|+++++|+|.++| ||+++|+++|++.++..++|+.+   ++.+
T Consensus        62 ~~~~~~Kerve~iD~~~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~g-g~v~kwt~eYe~~~~~~~~~e~~k~~ke~~  140 (159)
T d1fm4a_          62 FPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDG-GCVLKISNKYHTKGNHEVKAEQVKASKEMG  140 (159)
T ss_dssp             SSSSEEEEEEEEEETTTTEEEEEEEEBTTBTTTEEEEEEEEEEEECTTS-CEEEEEEEEEEESTTCCCCTTTTHHHHHHH
T ss_pred             CCceEEEEEEEEEcccccEEEEEEEeccccccceEEEEEEEEEecCCCC-ceEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999976 899999999999999888 99999999999999887777765   5778


Q ss_pred             HHHHHHHHHHHhcCCC
Q 039477           77 IDVAKDIDAHLLSQQP   92 (92)
Q Consensus        77 ~~~~k~ie~~l~~~~~   92 (92)
                      .+|||+||+||+|||.
T Consensus       141 ~~~~K~iE~YLlanp~  156 (159)
T d1fm4a_         141 ETLLRAVESYLLAHSD  156 (159)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhChh
Confidence            8999999999999994

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=99.96  E-value=2.4e-28  Score=160.59  Aligned_cols=91  Identities=22%  Similarity=0.276  Sum_probs=84.1

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQIL   76 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~   76 (92)
                      |+..++||||+++|+++|+++|+++||+++ ..|++|+.++++.|.+++ ||+++|+++|+++++..++|+.+   ++.+
T Consensus        62 ~~~~~~KErie~iD~~~~~~~y~viEGd~l~~~~~s~~~~~~~~~~~~~-g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~  140 (159)
T d1e09a_          62 SQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSG-GSIIKSTSHYHTKGNVEIKEEHVKAGKEKA  140 (159)
T ss_dssp             SSCEEEEEEEEEEETTTTEEEEEECCCTTTGGGEEEEEEEEEECCCTTS-SEEEEEEEEEEECSSCCCCHHHHHHHHHHH
T ss_pred             CCcEEEEEEEEEEcccccEEEEEEEecccccccEEEEEEEEEEccCCCC-CcEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999987 889999999999998877 89999999999999998888775   4678


Q ss_pred             HHHHHHHHHHHhcCCC
Q 039477           77 IDVAKDIDAHLLSQQP   92 (92)
Q Consensus        77 ~~~~k~ie~~l~~~~~   92 (92)
                      .+|+|+||+||++||.
T Consensus       141 ~~~~K~iEayLlanp~  156 (159)
T d1e09a_         141 SNLFKLIETYLKGHPD  156 (159)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhChh
Confidence            8999999999999994

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=99.96  E-value=8.3e-28  Score=157.23  Aligned_cols=89  Identities=19%  Similarity=0.318  Sum_probs=82.7

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQIL   76 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~   76 (92)
                      |++.++|||++++|+++|+++|+++||+++ ..|++|+.+++++|.++| ||+++|+++|++.++..++|+.+   ++.+
T Consensus        61 ~~~~~~Kerve~iD~~~~~~~y~viEGd~l~~~y~s~~~~~~~~~~~~g-gsv~k~t~eYe~~~~~~~~~e~~k~~~e~~  139 (153)
T d2bk0a1          61 GPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADG-GSICKTTAIFHTKGDAVVPEENIKYANEQN  139 (153)
T ss_dssp             SSCCEEEEEEEEEETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTTS-CEEEEEEEEEEESTTCCCCHHHHHHHHHHH
T ss_pred             ccceeeEEEEEEEecCccEEEEEEEecccccccEEEEEEEEEEecCCCC-CeEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            567899999999999999999999999976 889999999999999887 89999999999999998899876   4568


Q ss_pred             HHHHHHHHHHHhcC
Q 039477           77 IDVAKDIDAHLLSQ   90 (92)
Q Consensus        77 ~~~~k~ie~~l~~~   90 (92)
                      .+|||+||+||+||
T Consensus       140 ~~~~K~iE~YLlan  153 (153)
T d2bk0a1         140 TALFKALEAYLIAN  153 (153)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcC
Confidence            89999999999998

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.95  E-value=1.7e-28  Score=161.13  Aligned_cols=91  Identities=22%  Similarity=0.242  Sum_probs=83.5

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQIL   76 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~   76 (92)
                      |+..++||||+++|+++++++|+++||+++ ..|++|+.+++++|.++| ||+++|+++|++.++..++|+.+   ++.+
T Consensus        61 ~~~~~~Kerie~vD~e~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~g-gsv~k~t~eYe~~~~~~~~~e~ik~~~e~~  139 (157)
T d1xdfa1          61 GETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANG-GSIGKVTIKIETKGDAQPNEEEGKAAKARG  139 (157)
T ss_dssp             TEEEEEEEEEEEEEGGGTEEEEEEESSTTSCTTEEEEEEEEEEEECTTS-SEEEEEEEEEEESSSSCCCHHHHHHHHHHH
T ss_pred             CccEEEEEEEEEEechhcEEEEEEEecccccccEEEEEEEEEEEcCCCC-ceEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999999987 889999999999999988 99999999999999988888875   5567


Q ss_pred             HHHHHHHHHHHhcCCC
Q 039477           77 IDVAKDIDAHLLSQQP   92 (92)
Q Consensus        77 ~~~~k~ie~~l~~~~~   92 (92)
                      .+|+|+||+||++||.
T Consensus       140 ~~~~K~iEaYLlanpd  155 (157)
T d1xdfa1         140 DAFFKAIENYLSAHPE  155 (157)
T ss_dssp             HTTTHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHhhCCC
Confidence            8999999999999983

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.95  E-value=2.8e-28  Score=159.86  Aligned_cols=91  Identities=21%  Similarity=0.307  Sum_probs=81.6

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChh--hHHHHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPT--GKLQILI   77 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~--~~~~~~~   77 (92)
                      |+.+++||||+++|++||+++|+++||+++ ..|++|+.+++++|.++| ||+++|+++|++.++..++++  ..++.+.
T Consensus        61 ~~~~~~Kerie~iD~en~~~~y~viEGd~l~~~~~~~~~~~k~~~~~~~-g~i~k~t~eYe~~g~~~~e~~~~~~ke~~~  139 (155)
T d1icxa_          61 GHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDG-GSIGKINVKFHTKGDVLSETVRDQAKFKGL  139 (155)
T ss_dssp             SSEEEEEEEEEEEEGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGGG-CEEEEEEEEEEESSSSCCHHHHTTHHHHHH
T ss_pred             CceEEEEEEEEEEcccccEEEEEEEecccccccEEEEEEEEEEecCCCC-CeEEEEEEEEEECCCCCChhhHHHHHHHHH
Confidence            467899999999999999999999999987 889999999999999887 899999999999987644333  2577899


Q ss_pred             HHHHHHHHHHhcCCC
Q 039477           78 DVAKDIDAHLLSQQP   92 (92)
Q Consensus        78 ~~~k~ie~~l~~~~~   92 (92)
                      +|||+||+||+|||.
T Consensus       140 ~~fK~iE~YLlanPd  154 (155)
T d1icxa_         140 GLFKAIEGYVLAHPD  154 (155)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhhCcC
Confidence            999999999999994

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=99.91  E-value=1.3e-23  Score=136.15  Aligned_cols=83  Identities=19%  Similarity=0.260  Sum_probs=74.4

Q ss_pred             CCceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH---HHHH
Q 039477            1 GSPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK---LQIL   76 (92)
Q Consensus         1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~---~~~~   76 (92)
                      |+..++||||+++|+++|+++|+++||+++ .+|++|+++++++|.++| ||+++|+++|++.++..++++.+   ++.+
T Consensus        61 ~~~~~~kErl~~iD~~~~~~~y~iiEGd~l~~~~~s~~~~~~~~~~~~g-gs~vkw~~~y~~~~~~~~~ee~~k~~k~~~  139 (147)
T d1txca1          61 DKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGG-GSISKVTLKFHTKGDAPLSDAVRDDALAKG  139 (147)
T ss_dssp             TEEEEEEEEEEEEEGGGTEEEEEEEESTTSCTTEEEEEEEEEEEECSTT-CEEEEEEEEEEETTSCCCCHHHHHHHHHHH
T ss_pred             CcceEEEEEEEEEccCCcEEEEEEEccCccccceEEEEEEEEEecCCCC-CcEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            345789999999999999999999999987 899999999999999887 89999999999998887777665   5567


Q ss_pred             HHHHHHHH
Q 039477           77 IDVAKDID   84 (92)
Q Consensus        77 ~~~~k~ie   84 (92)
                      .+|||+||
T Consensus       140 ~~~~KavE  147 (147)
T d1txca1         140 AGFFKAIE  147 (147)
T ss_dssp             HHHHHHHH
T ss_pred             hhhheecC
Confidence            79999997

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.63  E-value=5e-15  Score=92.95  Aligned_cols=80  Identities=18%  Similarity=0.323  Sum_probs=65.2

Q ss_pred             eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHH----HHHHH
Q 039477            4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQ----ILIDV   79 (92)
Q Consensus         4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~----~~~~~   79 (92)
                      .++.|||+.+|+.+|+++|++++|++  ++.+|.++++|.|.++|++|+|+|+++|++.+.   +++....    .+..+
T Consensus        54 ~~~~E~l~~~d~~~~~~~y~~~~~~~--p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~~~---~~~~~~~~~~~~~~~~  128 (138)
T d3cnwa1          54 DTIIERLEVFNDKERYYTYSIMNAPF--PVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEV---SDEEAINLFHGIYSDG  128 (138)
T ss_dssp             CEEEEEEEEEETTTTEEEEEEEECSS--SEEEEEEEEEEEECSSTTCEEEEEEEEEEESSS---CHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEEEEeCCCcEEEEEEecCCC--cceeeEEEEEEEECCCCCeEEEEEEEEEecCCC---CHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999  999999999999988775799999999998653   3333322    34466


Q ss_pred             HHHHHHHHh
Q 039477           80 AKDIDAHLL   88 (92)
Q Consensus        80 ~k~ie~~l~   88 (92)
                      ++.|+++++
T Consensus       129 l~~L~~~f~  137 (138)
T d3cnwa1         129 LKALQQAFL  137 (138)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            777777653

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=0.0002  Score=42.88  Aligned_cols=78  Identities=19%  Similarity=0.214  Sum_probs=53.1

Q ss_pred             EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCC-ChhhH-----HHHHHHHH
Q 039477            7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVP-DPTGK-----LQILIDVA   80 (92)
Q Consensus         7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~-~~~~~-----~~~~~~~~   80 (92)
                      ..++. .++.++.+.|++..|+    +..+.+++++.|.++  ||.+.|+++|+....... -+..+     .+.+..++
T Consensus        62 ~~~~~-~~~~~~~i~~~~~~g~----~~~~~g~w~l~~~~~--gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  134 (146)
T d2d4ra1          62 LEEEE-WDDENLRNRFFSPEGD----FDRYEGTWVFLPEGE--GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLL  134 (146)
T ss_dssp             EEEEE-EETTTTEEEEEEEEES----CSEEEEEEEEEECSS--SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEE-EcCCCCEEEEEEccCC----cceEEEEEEEEecCC--ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            44444 6789999999999985    446889999999764  699999999986532111 12222     22344677


Q ss_pred             HHHHHHHhcCC
Q 039477           81 KDIDAHLLSQQ   91 (92)
Q Consensus        81 k~ie~~l~~~~   91 (92)
                      +++++.+.+..
T Consensus       135 ~~l~~~~~~~s  145 (146)
T d2d4ra1         135 KGLEERVLAAS  145 (146)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhhc
Confidence            77777666543

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=96.41  E-value=0.034  Score=32.70  Aligned_cols=50  Identities=10%  Similarity=0.187  Sum_probs=38.9

Q ss_pred             EEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC
Q 039477           11 EAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED   65 (92)
Q Consensus        11 ~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~   65 (92)
                      ..++...+.+.+....++   ++..+..+++|.|.++  ||.|+|+.+|+-.+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~---~~~~~~~~w~~~~~~~--gT~v~~~~~~~~~~~~  118 (155)
T d2rera1          69 RVPDKGSRTVRAHRVETG---PFAYMNLHWTYRAVAG--GTEMRWVQEFDMKPGA  118 (155)
T ss_dssp             EEEEGGGTEEEEEESSCT---TEEEEEEEEEEEEETT--EEEEEEEEEEEECTTC
T ss_pred             EEEcCCccEEEEEeecCc---cceeeEEEEEEeecCC--ccEEEEEEEEEECCCc
Confidence            446777888877775543   5778899999999864  7999999999977654

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=95.77  E-value=0.018  Score=34.85  Aligned_cols=83  Identities=10%  Similarity=-0.021  Sum_probs=48.1

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCC-ChhhHHHHHHHHHHHH
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVP-DPTGKLQILIDVAKDI   83 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~-~~~~~~~~~~~~~k~i   83 (92)
                      .+.-++..+++. +.++|+.--++....-.....++++.+.++| +|.+.+...|........ ......+....++..|
T Consensus        74 ~~~g~v~~i~~~-~rl~~tw~~~~~~~~~~~~~v~~~~e~~~~g-~t~~~~~~~~~~~~~~~~~~~~g~~~GW~~~L~~L  151 (163)
T d1xuva_          74 AFHGVNHDVTEP-ERIISTFEFEGLPEKGHVILDTARFEALPGD-RTKLTSHSVFQTIEDRDGMLQSGMEEGINDSYERL  151 (163)
T ss_dssp             EEEEEEEEEETT-TEEEEEEEETTSSSSCCCEEEEEEEEEETTT-EEEEEEEEECSSHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             EEEEEEEEecCC-CEEEEEEeccCCCCCCCcEEEEEEEEEeCCC-cEEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888765 5577766433332233345678899898776 788887766532210000 0001123455678888


Q ss_pred             HHHHhc
Q 039477           84 DAHLLS   89 (92)
Q Consensus        84 e~~l~~   89 (92)
                      ++||.+
T Consensus       152 ~~~le~  157 (163)
T d1xuva_         152 DELLEK  157 (163)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888864

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=95.63  E-value=0.081  Score=30.39  Aligned_cols=49  Identities=4%  Similarity=-0.051  Sum_probs=35.5

Q ss_pred             EEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEE
Q 039477            6 AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK   61 (92)
Q Consensus         6 ~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~   61 (92)
                      +..++..++ .++.+++....+     ...+.....+.+.++| +|.++|+.+|..
T Consensus        58 ~~~~v~~~~-p~~~~~~~~~~~-----~~~~~~~~~~~~~~~g-~t~vt~~~~~~g  106 (137)
T d2b79a1          58 LAFTLVEVR-ENQCFSDLTATP-----FGNVLFEHEILENPDG-TISLRHSVSLTD  106 (137)
T ss_dssp             EEEEECCCB-TTTEEEEEEEET-----TEEEEEEEEEEECTTS-CEEEEEEEEECS
T ss_pred             eeeeeeccc-CCcEEEEEeccc-----ceeeeeEEEEccCCCC-cEEEEEEEeccc
Confidence            456777775 456788876433     3446667778888777 899999999964

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=95.50  E-value=0.045  Score=32.60  Aligned_cols=45  Identities=13%  Similarity=0.322  Sum_probs=34.6

Q ss_pred             EeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEc
Q 039477           12 AIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL   62 (92)
Q Consensus        12 ~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~   62 (92)
                      ..+..++.+.....+|    +++......++.|.++  ||.|+|.++|+-.
T Consensus        71 ~~~~~~~~~~~~~~~g----~f~~l~~~W~f~~~~~--~T~V~~~l~fe~~  115 (148)
T d1t17a_          71 RRDKDARSIDVSLLYG----PFKRLNNGWRFMPEGD--ATRVEFVIEFAFK  115 (148)
T ss_dssp             EEETTTCEEEEEESST----TSSCEEEEEEEEEETT--EEEEEEEEEECCS
T ss_pred             eecCCceEEEEeccCc----hhhhcccceeeccCCC--ceEEEEEEEEEEC
Confidence            3566777776666666    4667889999999764  7999999999855

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.57  E-value=0.15  Score=29.97  Aligned_cols=50  Identities=18%  Similarity=0.179  Sum_probs=31.9

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEc
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL   62 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~   62 (92)
                      ..+-++.. +..++.+.|+...|+-  .  .-..++++.|.  |.||.+.|+. |.+.
T Consensus        57 ~~~~~i~~-~~p~~~i~w~~~~~~~--~--~g~v~fr~~~~--g~gt~v~~~~-~~pp  106 (133)
T d2qpva1          57 EVRVNFAP-HNEFGVIDHVVTLPDG--L--KVYNALRVTPN--GSGTEVSFTL-LRLE  106 (133)
T ss_dssp             EEEEEECC-CCSSCBCCEEEECTTS--C--EEEEEEEEEEE--TTEEEEEEEE-ECCT
T ss_pred             cEEEEEEE-cCCCCEEEEEEecCCC--C--EEEEEEEEccC--CCeEEEEEEE-EeCC
Confidence            34445554 6789999999988754  2  22345666654  4478888876 4443

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.11  E-value=0.36  Score=27.15  Aligned_cols=51  Identities=24%  Similarity=0.263  Sum_probs=32.2

Q ss_pred             EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477            9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus         9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      .....+.......+.......  ....+..++++.|.++  ||.++|+.++...+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--gt~v~~~~~~~~~g  115 (147)
T d2ns9a1          65 SFEDLEKPSKATVKGSGRGAG--STLDFTLRFAVEPSGG--GSRVSWVFEGNVGG  115 (147)
T ss_dssp             EEEEEETTTEEEEEEEEECSS--EEEEEEEEEEEEEETT--EEEEEEEEEEEEEE
T ss_pred             eeeeecCCcceeEEEeeeccc--cceeeEEEEEEEecCC--CcEEEEEEEEEeCc
Confidence            333344444333333333333  4667888899988754  69999999998764

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=91.05  E-value=0.74  Score=26.22  Aligned_cols=31  Identities=10%  Similarity=0.231  Sum_probs=23.1

Q ss_pred             ceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477           32 LYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN   63 (92)
Q Consensus        32 ~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~   63 (92)
                      ......+...+.+.+++ +|.++|+++|+..+
T Consensus        85 ~~~~~~~~~~~~~~~~~-~T~v~~~~~~~~~g  115 (147)
T d2pcsa1          85 GFVNAEGVIDLTPINDE-CTQLTYTYSAEVGG  115 (147)
T ss_dssp             EEEEEEEEEEEEESSSS-EEEEEEEEEEEEES
T ss_pred             chhcceeEEeeecccCC-cEEEEEEEEEEECc
Confidence            45556666666666665 89999999999754

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=88.58  E-value=1.3  Score=25.32  Aligned_cols=76  Identities=9%  Similarity=0.004  Sum_probs=39.9

Q ss_pred             eEEEEEEEeeCCCCEEEE--EEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHH
Q 039477            5 IAKEIIEAIDNENYITNY--KVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKD   82 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y--~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~   82 (92)
                      .++-++..+++.+ .+.|  ...+.+-. .-..-..++++.|.++  +|.++.+-.  ... .....+........++..
T Consensus        65 ~~~g~v~~~~p~~-rl~~t~~~~~~~~~-~~~~~~vt~~l~~~~~--gT~l~~~~~--~~~-~~~~~~~~~~GW~~~L~~  137 (143)
T d3elia1          65 KVSGQVTHVKPPQ-SVGFTWGWHDDDDR-RGAESHVMFIVEPCAK--GARLILDHR--ELG-DDEMSLRHEEGWTSSLRK  137 (143)
T ss_dssp             EEEEEEEEEETTT-EEEEEEEEECTTSC-EEEEEEEEEECCBC----CEEEEEEEE--SCS-CHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEcCCCC-EEEEEEeecCCCCC-CCCcEEEEEEEEEcCC--CEEEEEEEE--cCC-CHHHHHHHHHHHHHHHHH
Confidence            4556788887665 4444  44443321 1122345677777654  688876543  111 111122224456678888


Q ss_pred             HHHHH
Q 039477           83 IDAHL   87 (92)
Q Consensus        83 ie~~l   87 (92)
                      |++||
T Consensus       138 L~~~l  142 (143)
T d3elia1         138 LAAEL  142 (143)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88887

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.07  E-value=2.1  Score=25.09  Aligned_cols=82  Identities=9%  Similarity=-0.012  Sum_probs=47.5

Q ss_pred             eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhh-----------HH
Q 039477            5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTG-----------KL   73 (92)
Q Consensus         5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~-----------~~   73 (92)
                      .+.-++.++++ ++.++|+.--.+.  +-.....++.+.+..+| +|.+.++.+..+..........           ..
T Consensus        69 ~~~g~v~e~~p-~~~i~~t~~~~~~--~~~~~~~~~~~~e~~~g-gT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (164)
T d2il5a1          69 VIEGIYESLVM-DEYVKMTIGMPGL--SETQDVIEVEFFERETG-GTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMV  144 (164)
T ss_dssp             EEEEEEEEEET-TTEEEEEESCC----CCCCEEEEEEEEECSSS-SEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEcC-CCEEEEEEeccCC--CCCceEEEEEEEEcCCC-CEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHH
Confidence            34557777864 5556666421111  11113445566565556 8999999998877554332211           12


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 039477           74 QILIDVAKDIDAHLLSQ   90 (92)
Q Consensus        74 ~~~~~~~k~ie~~l~~~   90 (92)
                      .....++..|.+||-+-
T Consensus       145 ~Gw~~~l~~L~~~lE~g  161 (164)
T d2il5a1         145 HGFELMFDKMYHVIETS  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            34567888998888653

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=84.68  E-value=0.74  Score=27.24  Aligned_cols=49  Identities=6%  Similarity=0.013  Sum_probs=30.1

Q ss_pred             EEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhh-----HHHHHHHHHHHHHHHHhcCC
Q 039477           37 SSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTG-----KLQILIDVAKDIDAHLLSQQ   91 (92)
Q Consensus        37 ~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~-----~~~~~~~~~k~ie~~l~~~~   91 (92)
                      ..++++.+.++  ||.++.+..+....    +.+.     ..+....++..|++||-+.+
T Consensus       110 ~v~~~l~~~~~--gT~lt~~~~~~~~~----~~~~~~~~g~~~GW~~~l~~L~~~le~~~  163 (165)
T d1xfsa_         110 TAVIELQPTSS--GTRYTACAMHNTPG----QRKLHEEMGFHEGWGTTITQLEELLKQEK  163 (165)
T ss_dssp             EEEEEEEECSS--SEEEEEEEECSSHH----HHHHHHTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEcCC--cEEEEEEEEcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45777777543  69888875533211    1111     12345678899999997765