Citrus Sinensis ID: 039493

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75
Protein Sequence
MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFAGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAVLN
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHcccccccccccHHHHcccccHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEcccccccEEEEEHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHccHHHHHHHEcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHHcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHcccccccccccccHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHcHHccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccHHHHHHHccccHHHHHHccccccccccccccccccccHHHHHHHHHHcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEHHHHHcHHHHHHHHHHHHHHHEEccHHcc
Coil and Loop (DISEMBL)
mlselgrrpmignsegsfgddFEKEIGMLLREQRRQETDDCERElnlyrsgsapptvegslsavgglfgaadnnmAFSELSrakagnnngfsseeelrsdpayLSYYYSnvnlnprlpppllskeDWRFAQRLrgessmlgelddrrkvnggagnsgsggnrslfsmppgfdtrkqQSESAQDKLRssadwggdgliglsgiglgskQKSLAEIFQDdlgratpvtgnpsrpasrnafdESIESISSAEAELANLRHDlksganvqgtsavqtigppssYTYAAVLGsslsrsttpdpqlvarapspcptaigsgrvgasekrgmtssnsfsgvssgiNESADLVAALSgmnlstngvlnednqlpsQIEQDIENHQNYLHgiqggqnhikqnkymkksdsgnlqmppglqsakMSYSDlaksngggldlnnasllTDRRVelqkpavptsnsylkgsptstlngggglnsqyqnvdnlpnyglggyalspsmASVMAgqlgagnlpplyENVAAASamavpgmdsrvlgggfasgqnlsatseshnlnragsqmgggalqfpfvdpvylqyLRSSEYAAQLAAlndpsvdrnflgNSYMNLLELQKAYLGVLlspqksqyggplgskssgsnhhgycgtpgfglgmsypgsplanpvipnspvgpgspirhndpnlrfagmrnlaggvmgpwhldasmdesfgSSLLeefksnktkcfelSEIAGHVVEFRYAMLLAHLMLHFSAVLN
Flexible Loop (DISEMBL)
mlselgrrpmignsegsfgddfEKEIGMLLREQRRQETDDCERELNlyrsgsapptveGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLrgessmlgelddrrkvnggagnsgsggnrslFSMPPGFDTRKQQSESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLgratpvtgnpsrpasrnaFDESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLvarapspcptaigsgrvgasekrGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKpavptsnsylkgsptSTLNGGGGLNSQYQNVDNLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFAGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAVLN
Low Complexity Region (SEG)
MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAylsyyysnvnlnprlpppllSKEDWRFAQRLRGESSMLGELDDRRKVnggagnsgsggnrsLFSMPPGFDTRKQQSESAQDKLRSSADWggdgliglsgiglgsKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDesiesissaeaeLANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTssnsfsgvssGINESADLVAALSGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFAGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAVLN
Disordered region (IsUnstruct)
*****************************************************************GLF*********************************AYLSYYYSNVNLNPRL*********W***************************************************************WGGDGLIGLSGIGLG****************************************************************************YA*********************************************************************************************************************************************************************************************YQNVDNLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMA*************************************GALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLL**********************YCGTPGFGLG*******************************RFAGMRNLAGGVMGPWHLDASM***F**SLLEEFKSNKTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAV**
Disordered Region (DISOPRED)
************************EIGM**********************GSAPPTVEGSLSAVGGL****************************ELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDW********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KSNKTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAVLN
Disordered Region (DISEMBL)
MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGF*****************ADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSS***********VARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKS************SNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFAGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAVLN
Disordered Region (DISPRO)
******************GDDFEKEIGMLLREQRR***********************GS*******************************SSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLRG********************************************************************L*SKQKSLAEIFQDDLGRATPVTG************************************************************************LVARAP*P***********************************DLV****GMNL****************EQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFAGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAVLN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAxxxxxxxxxxxxxxxxxxxxxLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFAGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAVLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	749	2.2.26 [Sep-21-2011]
Q9ZW06	972	Pumilio homolog 2 OS=Arab	yes	no	0.847	0.653	0.523	1e-177
Q9ZW07	968	Pumilio homolog 1 OS=Arab	no	no	0.841	0.650	0.511	1e-171
Q9ZW02	964	Pumilio homolog 3 OS=Arab	no	no	0.835	0.649	0.502	1e-165
Q9SS47	1003	Pumilio homolog 4 OS=Arab	no	no	0.460	0.343	0.341	1e-40
Q9LJX4	961	Pumilio homolog 5 OS=Arab	no	no	0.148	0.115	0.408	3e-14

>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1

 Score =  622 bits (1605), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 386/738 (52%), Positives = 477/738 (64%), Gaps = 103/738 (13%)

Query: 1   MLSELGRRPMI-GNSEGSFGDDFEKEIGMLLREQRRQ--ETDDCERELNLYRSGSAPPTV 57
           M+ ELGRRPM  GN + SFGDD+EKEIG+LL EQ+R+  E D+ ERELNLYRSGSAPPTV
Sbjct: 1   MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTV 60

Query: 58  EGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRL 117
           +GS+SA GGL  +      F E      GN  G   +EE R DPAYLSYYY+N+ LNPRL
Sbjct: 61  DGSVSAAGGL-FSGGGGAPFLEFGGGNKGNGFG-GDDEEFRKDPAYLSYYYANMKLNPRL 118

Query: 118 PPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQ 177
           PPPL+S+ED R AQRL+G S++LG + DRRKVN          ++SLFSMPPGFD RKQ 
Sbjct: 119 PPPLMSREDLRVAQRLKGSSNVLGGVGDRRKVND---------SQSLFSMPPGFDQRKQH 169

Query: 178 SESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNA 237
               +    SS++W  +GLIGL G+G+G KQKS A+IFQ D+G   PVT  PSRPASRN 
Sbjct: 170 EFEVEKTSASSSEWDANGLIGLPGLGIGGKQKSFADIFQADMGHGHPVTKQPSRPASRNT 229

Query: 238 FDESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPD 297
           FDE+++S                   N    SA Q IG PS Y+YAAVLGSSLSR+ TPD
Sbjct: 230 FDENVDS------------------KNNLSPSASQGIGAPSPYSYAAVLGSSLSRNGTPD 271

Query: 298 PQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNG 357
           PQ +AR PSPC T IGSGRV +++KR  ++ + F+G   G+NES+DLV ALSGMNLS +G
Sbjct: 272 PQAIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNG---GLNESSDLVNALSGMNLSGSG 328

Query: 358 VLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSY 417
            L+E      Q EQD+E  +NY+ G+QGG N + Q+ +  KSD                 
Sbjct: 329 GLDER----GQAEQDVEKVRNYMFGLQGGHNEVNQHGFPNKSD----------------- 367

Query: 418 SDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVD 477
                                   + QK      NS L+G+  ST N GGG+ +QYQ++D
Sbjct: 368 ------------------------QAQKATGLLRNSQLRGAQGSTYNDGGGVATQYQHLD 403

Query: 478 NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASG 536
           + PNY L  Y L+P++AS+MA QLG  N  P+YEN +AASAM   GMDSR+ GGG+ +SG
Sbjct: 404 S-PNYCLNNYGLNPAVASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHGGGYVSSG 462

Query: 537 QNLSATSESHNLNRAGSQM--GGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNF 594
           QNL   SES NL R  ++M  GG  LQ    DP+Y Q      YA  L  LNDPS+D NF
Sbjct: 463 QNL---SESRNLGRFSNRMMGGGTGLQSHMADPMYHQ------YADSLDLLNDPSMDVNF 513

Query: 595 LGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPL 654
           +GNSYMN+LELQ+AYLG     QKSQYG P   KS   N H   G+P FG   SYPGSPL
Sbjct: 514 MGNSYMNMLELQRAYLGA----QKSQYGVPY--KSGSPNSHTDYGSPTFG---SYPGSPL 564

Query: 655 ANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKS 713
           A+ ++PNS V P SP+R  + N+R+ +  RN AGGVMG WH+DAS+DE FGSS+LEEFKS
Sbjct: 565 AHHLLPNSLVSPCSPMRRGEVNMRYPSATRNYAGGVMGSWHMDASLDEGFGSSMLEEFKS 624

Query: 714 NKTKCFELSEIAGHVVEF 731
           NKT+ FEL+EIAGHVVEF
Sbjct: 625 NKTRGFELAEIAGHVVEF 642

Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1

 Score =  603 bits (1555), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 378/739 (51%), Positives = 476/739 (64%), Gaps = 109/739 (14%)

Query: 1   MLSELGRRPMI-GNSEGSFGDDFEKEIGMLLREQRRQ--ETDDCERELNLYRSGSAPPTV 57
           M+ ELGRRPM  GN + SFGDD+EKEIG+LL EQ+R+  E D+ ERELNL+RSGSAPPTV
Sbjct: 1   MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLFRSGSAPPTV 60

Query: 58  EGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRL 117
           +GS+SA GGL  +      F E      GN  G   +EE R DPAYLSYYY+N+ LNPRL
Sbjct: 61  DGSVSAAGGL-FSGGGGAPFLEFGGVNKGNGFG-GDDEEFRKDPAYLSYYYANMKLNPRL 118

Query: 118 PPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQ 177
           PPPL+S+ED R AQRL+G +++LG + DRRKVN          NRSLFSMPPGF+  K  
Sbjct: 119 PPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVND---------NRSLFSMPPGFEGEKTG 169

Query: 178 SESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNA 237
           +        S+++W  +GLIGL G+GLG KQKS A+IFQ D+G   PV   PSRPASRN 
Sbjct: 170 A--------SASEWDANGLIGLPGLGLGGKQKSFADIFQADMGHGHPVAQQPSRPASRNT 221

Query: 238 FDESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPD 297
           FDE+++S                   N    SA Q IG PS Y+YAAVLGSSLSR+ TPD
Sbjct: 222 FDENVDS------------------NNNLSPSASQGIGAPSPYSYAAVLGSSLSRNGTPD 263

Query: 298 PQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNG 357
           PQ +AR PSPC T IGSGR+ +++KR  ++ + F+GV+SG+NES+DLV ALSG+NLS + 
Sbjct: 264 PQAIARVPSPCLTPIGSGRMSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSCSV 323

Query: 358 VLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSY 417
            L++     SQ EQD+E  +NY+ G+QGG N + Q+++  KSD  +              
Sbjct: 324 GLDDR----SQAEQDVEKVRNYMFGLQGGHNEVNQHEFPNKSDQAH-------------- 365

Query: 418 SDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVD 477
               K+ G                          NS L+G   S  NGG GL + YQ +D
Sbjct: 366 ----KATGS-----------------------LRNSQLRGPHGSAYNGGVGLANPYQQLD 398

Query: 478 NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASG 536
           + PNY L  YAL+P++AS+MA QLG  N  P+Y+NV   SA+   GMDSR  G GF +SG
Sbjct: 399 S-PNYCLNNYALNPAVASMMANQLGNNNFAPMYDNV---SALGFSGMDSRHHGRGFVSSG 454

Query: 537 QNLSATSESHNLNRAGSQM--GGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNF 594
           QNLS   ES NL R  ++M  GG  LQ   VDP+Y      ++YA  L  LNDPS+DRNF
Sbjct: 455 QNLS---ESRNLGRFSNRMMGGGAGLQSHMVDPMY------NQYADSLDLLNDPSMDRNF 505

Query: 595 LG-NSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSP 653
           +G +SYM++LELQ+AYLG     QKSQYG P   KS   N H Y G+P FG  MSYPGSP
Sbjct: 506 MGGSSYMDMLELQRAYLGA----QKSQYGVPY--KSGSPNSHSYYGSPTFGSNMSYPGSP 559

Query: 654 LANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFK 712
           LA+  +PNS + P SP+R ++ N+RF +  RN +GG+MG WH+DAS DE FGSS+LEEFK
Sbjct: 560 LAHHGMPNSLMSPYSPMRRDEVNMRFPSATRNYSGGLMGSWHMDASFDEGFGSSMLEEFK 619

Query: 713 SNKTKCFELSEIAGHVVEF 731
           SNKT+ FELSEIAGHVVEF
Sbjct: 620 SNKTRGFELSEIAGHVVEF 638

Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1

 Score =  583 bits (1503), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 371/738 (50%), Positives = 463/738 (62%), Gaps = 112/738 (15%)

Query: 1   MLSELGRRPMI-GNSEGSFGDDFEKEIGMLLREQRRQ--ETDDCERELNLYRSGSAPPTV 57
           M+ ELGRRPM  GN + SFGDD+EKEIG+LL EQ+R+  E D+ ERELNLYRSGSAPPTV
Sbjct: 2   MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTV 61

Query: 58  EGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRL 117
           +GSLSA GGL  +     +F E      GN  G   +EE R DPAYLSYYY+N+ LNPRL
Sbjct: 62  DGSLSAAGGL-FSGGGGASFLEFGGVNKGNGFG-GDDEEFRKDPAYLSYYYANMKLNPRL 119

Query: 118 PPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQ 177
           PPPL+S+ED R AQRL+G +++LG + DRRKVN          +RSLFSMPPGF+  K  
Sbjct: 120 PPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVND---------SRSLFSMPPGFEAGKPG 170

Query: 178 SESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNA 237
           +        S+++W  +GLIGL     G KQKS A+IFQ D+G   PV   PSRPASRN 
Sbjct: 171 A--------SASEWDANGLIGLGL---GGKQKSFADIFQADMGH--PVVQQPSRPASRNT 217

Query: 238 FDESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPD 297
           FDE+++S                   N    SA Q IG PS Y YAAVLGSSLSR+ TPD
Sbjct: 218 FDENVDS------------------NNNLSPSASQGIGAPSPYCYAAVLGSSLSRNGTPD 259

Query: 298 PQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNG 357
           PQ +AR PSPC T IGSGRV +++KR  ++ + F+GV+SG+NES+DLV ALSG+NLS  G
Sbjct: 260 PQGIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTG 319

Query: 358 VLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSY 417
            L+E      Q EQD+E  +NY+ G+Q G N +  + +  +SD        G  S +   
Sbjct: 320 GLDER----GQAEQDVEKVRNYMFGLQDGHNEVNPHGFPNRSDQAR-----GTASCR--- 367

Query: 418 SDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVD 477
                                             NS ++GS  S  N G G+ + YQ+ D
Sbjct: 368 ----------------------------------NSQMRGSQGSAYNSGSGVANPYQHHD 393

Query: 478 NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASG 536
           + PNY    YAL+P++AS+MA QLG  N  P+YEN  A++ +    MDSR+ GG F +SG
Sbjct: 394 S-PNY----YALNPAVASMMANQLGTNNYSPMYEN--ASATLGYSAMDSRLHGGSFVSSG 446

Query: 537 QNLSATSESHNLNRAGSQMGGGALQFP--FVDPVYLQYLRSSEYAAQLAALNDPSVDRNF 594
           QNL   SES N+ R G++M  G    P    DP+Y QY R SE A     LNDPS+DRN+
Sbjct: 447 QNL---SESRNIGRVGNRMMEGGTGHPSHLADPMYHQYARFSENADSFDLLNDPSMDRNY 503

Query: 595 LGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPL 654
            GNSYMN+LE+Q+AYLG     QKSQYG P   KS   N H Y G+P FG  MSYPGSPL
Sbjct: 504 -GNSYMNMLEIQRAYLG----SQKSQYGLPY--KSGSPNSHSYYGSPTFGSNMSYPGSPL 556

Query: 655 ANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKS 713
           A+  +PNS + P SP+R  + N+R+ A  RN  GGVMG WH+DAS+DE FGSS+LEEFKS
Sbjct: 557 AHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKS 616

Query: 714 NKTKCFELSEIAGHVVEF 731
           NKT+ FELSEIAGHVVEF
Sbjct: 617 NKTRGFELSEIAGHVVEF 634

Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/390 (34%), Positives = 202/390 (51%), Gaps = 45/390 (11%)

Query: 20  DDFEKEIGMLLREQRRQET--DDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADN--NM 75
           D F++E+  LL++ R Q++   + ER+++++RSGSAPPTVEG L A+   +   +N  + 
Sbjct: 26  DRFQRELESLLQQHRNQQSFGRERERDIDVHRSGSAPPTVEGLLRAMDNQYLNNNNSDHR 85

Query: 76  AFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLRG 135
               +S     N     S++ELR  P YLSYYYSN + NPRLPPPLLS+EDWR AQR   
Sbjct: 86  DVGNISSITTSNGVELLSDDELRWHPEYLSYYYSNEHSNPRLPPPLLSREDWRVAQRFHN 145

Query: 136 ESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSESAQDKLRSSA------ 189
             S+   + + RK      NS      SLFS+ PG     +Q+E+   +LR++       
Sbjct: 146 SESVFDPVGEWRKKTVEVDNSS-----SLFSVQPGVPV--EQAENDLMELRNAVAQGRSQ 198

Query: 190 -----DWGGDGLIGLSGI-GLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDESIE 243
                D G + LIGLSG  GLG ++KS A+I Q+ L R   +    SRPAS N F +  +
Sbjct: 199 KVQRLDQGREDLIGLSGYSGLGPRRKSFADILQEGLERDAALGSQLSRPASCNTFRDMKD 258

Query: 244 SISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLS----RSTTPDPQ 299
           +     A L+N      +G      +   ++   +  +   +LGS++S    R+ TPD  
Sbjct: 259 A-----AVLSN----FSAGGFDSPLAFHDSLHSTAKNSPNTMLGSTMSSPVPRNRTPDSH 309

Query: 300 LVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGIN--ESADLVAALSGMNLSTNG 357
           LV R+ +     IG+ RVG  EK+     N+F           +AD+   LS +N+S   
Sbjct: 310 LVGRSTASGLPPIGT-RVGPVEKK-----NTFGTAIQNCESYTAADVADTLSRLNMSEMS 363

Query: 358 VLNEDNQLPSQIEQDIENHQNYLHGIQGGQ 387
            + E N + SQ++ ++EN  + +  I  G 
Sbjct: 364 QVKE-NHMQSQLQVELENQSDVMRYIPNGH 392

Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2

 Score = 81.3 bits (199), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 16  GSFG--DDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADN 73
           G FG  D   +++G L++  R    D   +  +  RS SAPP++EGS +A+  L    + 
Sbjct: 26  GIFGSLDMAVEDLGFLMKRNRLDSGDQTGKFPS--RSESAPPSMEGSFAALRNLLKQQEG 83

Query: 74  NMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRL 133
           + +   LSRA       + SEEE+RSDPAY++YY SN+NLNPRLPPPL+S+E+    +  
Sbjct: 84  SSS-EVLSRAI----ENYDSEEEIRSDPAYVAYYLSNINLNPRLPPPLISRENQHLLRHF 138

Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	749
225434877	1065	PREDICTED: pumilio homolog 1-like [Vitis	0.963	0.677	0.720	0.0
147775244	1039	hypothetical protein VITISV_024967 [Viti	0.929	0.669	0.700	0.0
224059464	1065	predicted protein [Populus trichocarpa]	0.963	0.677	0.704	0.0
224106433	998	predicted protein [Populus trichocarpa]	0.895	0.672	0.674	0.0
449496651	1043	PREDICTED: LOW QUALITY PROTEIN: pumilio	0.930	0.668	0.655	0.0
449450756	1043	PREDICTED: pumilio homolog 1-like [Cucum	0.930	0.668	0.655	0.0
356557841	1054	PREDICTED: pumilio homolog 2-like [Glyci	0.945	0.671	0.685	0.0
356538984	1047	PREDICTED: pumilio homolog 2-like [Glyci	0.939	0.672	0.663	0.0
357454231	1047	Pumilio-like protein [Medicago truncatul	0.937	0.670	0.666	0.0
357472855	1025	Pumilio-like protein [Medicago truncatul	0.917	0.670	0.650	0.0

>gi|225434877|ref|XP_002283191.1| PREDICTED: pumilio homolog 1-like [Vitis vinifera]

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/747 (72%), Positives = 623/747 (83%), Gaps = 25/747 (3%)

Query: 1   MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGS 60
           MLSELGRRPM+ N +GSFGDD EK+IG+LLREQRRQE DD E+ELNLYRSGSAPPTVEGS
Sbjct: 1   MLSELGRRPMLKNGDGSFGDDLEKDIGLLLREQRRQEADDYEKELNLYRSGSAPPTVEGS 60

Query: 61  LSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPP 120
           ++AVGGLFG       F +      GN NGF+SEEELRSDPAYLSYYYSNVNLNPRLPPP
Sbjct: 61  MNAVGGLFGGGAAFPGFPD-----DGNGNGFASEEELRSDPAYLSYYYSNVNLNPRLPPP 115

Query: 121 LLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSES 180
           LLSKEDWRFAQRL+G SS LG + DRRK+N    +SGS G RS++SMPPGF++RK+++E+
Sbjct: 116 LLSKEDWRFAQRLKGGSSGLGGIGDRRKMN--RNDSGSVG-RSMYSMPPGFNSRKEETEA 172

Query: 181 AQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDE 240
             +KL  SA+WGGDGLIGLSG+GLGSKQKSLAEIFQDDLGR TPV+G+PSRPASRNAFDE
Sbjct: 173 DSEKLCGSAEWGGDGLIGLSGLGLGSKQKSLAEIFQDDLGRTTPVSGHPSRPASRNAFDE 232

Query: 241 SIESISSAEAELANLRHDLKS------GANVQGTSAVQTIGPPSSYTYAAVLGSSLSRST 294
           + E + S EAEL +LR +LKS      GA+VQG+S VQ IG P+SYTYA+VLG SLSRST
Sbjct: 233 NAEPLGSVEAELGHLRRELKSADVLRSGASVQGSSTVQNIGAPTSYTYASVLGGSLSRST 292

Query: 295 TPDPQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLS 354
           TPDPQL+ARAPSPC T IG GR   SEKRG+  S+SF+ V   +NESADLVAALSGM+LS
Sbjct: 293 TPDPQLIARAPSPCLTPIGGGRTAISEKRGINGSSSFNSVPPSMNESADLVAALSGMDLS 352

Query: 355 TNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAK 414
           TNGV++E+N LPSQIEQD+ENHQ+YL  +QGGQ++IKQ+ Y+KKS+SG+LQ+P   QS K
Sbjct: 353 TNGVIDEENHLPSQIEQDVENHQSYLFNLQGGQSNIKQHSYLKKSESGHLQIPSAPQSGK 412

Query: 415 MSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQ 474
            SYSD  KSNG G +LNN SL+ DR+ EL K +VP+ NSYLKGS  S+ NGGGGL S YQ
Sbjct: 413 ASYSDSVKSNGVGSELNN-SLMADRQAELHKSSVPSGNSYLKGSSMSSHNGGGGLPSHYQ 471

Query: 475 N-VD----NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVL 529
             VD    ++PNYGLG Y+++P++AS+MA QLGA NLPPL+ENVAAASAM VPG+DSRVL
Sbjct: 472 QFVDSTNSSIPNYGLGAYSMNPALASMMASQLGAANLPPLFENVAAASAMGVPGIDSRVL 531

Query: 530 GGGFASGQNL-SATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRS-SEYAAQLAALND 587
           G G ASG N+ +ATSES NLNR G+ M G ALQ PFVDP+YLQYLR+    AAQ+AALND
Sbjct: 532 GAGLASGPNIGAATSESQNLNRIGNHMAGNALQAPFVDPMYLQYLRTAEYAAAQVAALND 591

Query: 588 PSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGM 647
           PSVDRN+LGNSY++LL LQKAYLG LLSPQKSQYG PLGSKSSGSNHHGY G P FG+GM
Sbjct: 592 PSVDRNYLGNSYVDLLGLQKAYLGALLSPQKSQYGVPLGSKSSGSNHHGYYGNPAFGVGM 651

Query: 648 SYPGSPLANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDA--SMDESFG 704
           SYPGSPLA+PVIPNSP+GPGSPIRHND N+R+ +GMRNLAGGVM PWHLDA  +MDE F 
Sbjct: 652 SYPGSPLASPVIPNSPIGPGSPIRHNDLNMRYPSGMRNLAGGVMAPWHLDAGCNMDEGFA 711

Query: 705 SSLLEEFKSNKTKCFELSEIAGHVVEF 731
           SSLLEEFKSNKTKCFELSEIAGHVVEF
Sbjct: 712 SSLLEEFKSNKTKCFELSEIAGHVVEF 738

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775244|emb|CAN61602.1| hypothetical protein VITISV_024967 [Vitis vinifera]

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/747 (70%), Positives = 607/747 (81%), Gaps = 51/747 (6%)

Query: 1   MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGS 60
           MLSELGRRPM+ N +GSFGDD EK+IG+LLREQRRQE DD E+ELNLYRSGSAPPTVEGS
Sbjct: 1   MLSELGRRPMLKNGDGSFGDDLEKDIGLLLREQRRQEADDYEKELNLYRSGSAPPTVEGS 60

Query: 61  LSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPP 120
           ++A                               EELRSDPAYLSYYYSNVNLNPRLPPP
Sbjct: 61  MNA-------------------------------EELRSDPAYLSYYYSNVNLNPRLPPP 89

Query: 121 LLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSES 180
           LLSKEDWRFAQRL+G SS LG + DRRK+N    +SGS G RS++SMPPGF++RK+++E+
Sbjct: 90  LLSKEDWRFAQRLKGGSSGLGGIGDRRKMN--RNDSGSVG-RSMYSMPPGFNSRKEETEA 146

Query: 181 AQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDE 240
             +KL  SA+WGG+GLIGLSG+GLGSKQKSLAEIFQDDLGR TPV+G+PSRPASRNAFDE
Sbjct: 147 DSEKLCGSAEWGGEGLIGLSGLGLGSKQKSLAEIFQDDLGRTTPVSGHPSRPASRNAFDE 206

Query: 241 SIESISSAEAELANLRHDLKS------GANVQGTSAVQTIGPPSSYTYAAVLGSSLSRST 294
           + E + S EAEL +LR +LKS      GA+VQG+S VQ IG P+SYTYA+VLG SLSRST
Sbjct: 207 NAEPLGSVEAELGHLRRELKSADVLRSGASVQGSSTVQNIGAPTSYTYASVLGGSLSRST 266

Query: 295 TPDPQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLS 354
           TPDPQL+ARAPSPC T IG GR   SEKRG+  S+SF+ V   +NESADLVAALSGM+LS
Sbjct: 267 TPDPQLIARAPSPCLTPIGGGRTAISEKRGINGSSSFNSVPPSMNESADLVAALSGMDLS 326

Query: 355 TNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAK 414
           TNGV++E+N LPSQIEQD+ENHQ+YL  +QGGQ++IKQ+ Y+KKS+SG+LQ+P   QS K
Sbjct: 327 TNGVIDEENHLPSQIEQDVENHQSYLFNLQGGQSNIKQHSYLKKSESGHLQIPSAPQSGK 386

Query: 415 MSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQ 474
            SYSD  KSNG G +LNN SL+ DR+ EL K +VP+ NSYLKGS  S+ NGGGGL S YQ
Sbjct: 387 ASYSDSVKSNGVGSELNN-SLMADRQAELHKSSVPSGNSYLKGSSMSSHNGGGGLPSHYQ 445

Query: 475 N-VD----NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVL 529
             VD    ++PNYGLG Y+++P++AS+MA QLGA NLPPL+ENVAAASAM VPG+DSRVL
Sbjct: 446 QFVDSTNSSIPNYGLGAYSMNPALASMMASQLGAANLPPLFENVAAASAMGVPGIDSRVL 505

Query: 530 GGGFASGQNL-SATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRS-SEYAAQLAALND 587
           G G ASG N+ +ATSES NLNR G+ M G ALQ PFVDP+YLQYLR+    AAQ+AALND
Sbjct: 506 GAGLASGPNIGAATSESQNLNRIGNHMAGNALQAPFVDPMYLQYLRTAEYAAAQVAALND 565

Query: 588 PSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGM 647
           PSVDRN+LGNSY++LL LQKAYLG LLSPQKSQYG PLGSKSSGSNHHGY G P FG+GM
Sbjct: 566 PSVDRNYLGNSYVDLLGLQKAYLGALLSPQKSQYGVPLGSKSSGSNHHGYYGNPAFGVGM 625

Query: 648 SYPGSPLANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDA--SMDESFG 704
           SYPGSPLA+PVIPNSP+GPGSPIRHND N+R+ +GMRNLAGGVM PWHLDA  +MDE F 
Sbjct: 626 SYPGSPLASPVIPNSPIGPGSPIRHNDLNMRYPSGMRNLAGGVMAPWHLDAGCNMDEGFA 685

Query: 705 SSLLEEFKSNKTKCFELSEIAGHVVEF 731
           SSLLEEFKSNKTKCFELSEIAGHVVEF
Sbjct: 686 SSLLEEFKSNKTKCFELSEIAGHVVEF 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059464|ref|XP_002299859.1| predicted protein [Populus trichocarpa] gi|222847117|gb|EEE84664.1| predicted protein [Populus trichocarpa]

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/747 (70%), Positives = 615/747 (82%), Gaps = 25/747 (3%)

Query: 1   MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGS 60
           MLSELGRRPMIG ++GSFGDD EKEIG+LLREQRRQE DD E+ELNLYRSGSAPPTVEGS
Sbjct: 1   MLSELGRRPMIGANDGSFGDDLEKEIGLLLREQRRQEADDREKELNLYRSGSAPPTVEGS 60

Query: 61  LSAVGGLFGAADNNMA-FSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPP 119
           L+AVGGLFG   N  A FS+    K  N NGF+SE+ELRSDPAYLSYYYSNVNLNPRLPP
Sbjct: 61  LNAVGGLFGGGGNGGASFSDFIGGK--NGNGFTSEKELRSDPAYLSYYYSNVNLNPRLPP 118

Query: 120 PLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSE 179
           PLLSKEDWR AQRL+G SS+LG + DRRK  G   +SG+G  RS+FSMPPGF++R Q SE
Sbjct: 119 PLLSKEDWRSAQRLKGGSSVLGGIGDRRK--GSRADSGNG--RSMFSMPPGFESRNQDSE 174

Query: 180 SAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFD 239
              +K+  S +WGGDGLIGL G+GL SKQKS AEIFQDDLGRATPVTG PSRPASRNAF+
Sbjct: 175 VESEKVSGSLEWGGDGLIGLPGLGLASKQKSFAEIFQDDLGRATPVTGPPSRPASRNAFN 234

Query: 240 ESIESISSAEAELANLRHDL------KSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRS 293
           E++E++ SAEAELA+LR +L      +SGAN QG+S VQ IG PS Y+YAA LG+SLSRS
Sbjct: 235 ENVETLGSAEAELAHLRRELSSADTLRSGANGQGSSPVQNIGQPS-YSYAAALGASLSRS 293

Query: 294 TTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNL 353
           TTPDPQ VARAPSPCPT IG GRV  SEKRG  SSNSF GVSSGI E ++LVAA SGMNL
Sbjct: 294 TTPDPQHVARAPSPCPTPIGQGRVSTSEKRGTASSNSFIGVSSGIREPSELVAAFSGMNL 353

Query: 354 STNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSA 413
           +TNG ++E++ LPSQ EQD+++HQNYL G+QGGQNH+KQN Y+ KS+SG+L M    QSA
Sbjct: 354 ATNGGVDEESHLPSQAEQDVDSHQNYLFGLQGGQNHLKQNTYINKSESGHLHMSSVPQSA 413

Query: 414 KMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQY 473
            +SYSDLA+SNGGG +LN+ SL+ DR+VELQK A P+ NSY+KGSPTS L GGGGL +QY
Sbjct: 414 NLSYSDLARSNGGGSNLNSPSLMADRQVELQKLAFPSGNSYMKGSPTSALGGGGGLPAQY 473

Query: 474 QNVD----NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVL 529
           Q++D    +LPNYGL GY+++P++AS++A QLG GNLPPL+ENVAAASAMA+PGMDSRVL
Sbjct: 474 QHLDGINSSLPNYGLSGYSMNPALASMIAQQLGTGNLPPLFENVAAASAMAIPGMDSRVL 533

Query: 530 GGGFASGQNLSATS-ESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAA-QLAALND 587
           G G  SG NL+A S ES+NL R GS + G ALQ PFVDP+YLQYLR+ +YAA QL+A+ND
Sbjct: 534 GSGLGSGTNLTAASLESYNLGRGGSPIAGSALQAPFVDPMYLQYLRTPDYAATQLSAIND 593

Query: 588 PSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGM 647
           PS+DRN+LGNSY+N LE+QKAY   LLS QKSQYG PLG KS  S HHGY G P FG+GM
Sbjct: 594 PSLDRNYLGNSYLNFLEIQKAY--GLLSSQKSQYGVPLGGKSGSSTHHGYFGNPAFGVGM 651

Query: 648 SYPGSPLANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDA--SMDESFG 704
            YPGSPLA+PVIPNSPVGP SP+RHN+ N+RF +GMRNLAGG+MG W LDA  +MDE++ 
Sbjct: 652 PYPGSPLASPVIPNSPVGPASPLRHNELNMRFPSGMRNLAGGIMGHWPLDAGCNMDENYA 711

Query: 705 SSLLEEFKSNKTKCFELSEIAGHVVEF 731
            SLLEEFKSNKTKC ELSEI GHVVEF
Sbjct: 712 PSLLEEFKSNKTKCLELSEIVGHVVEF 738

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106433|ref|XP_002314164.1| predicted protein [Populus trichocarpa] gi|222850572|gb|EEE88119.1| predicted protein [Populus trichocarpa]

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/741 (67%), Positives = 577/741 (77%), Gaps = 70/741 (9%)

Query: 1   MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGS 60
           MLSELGRRPMIG ++GSFGDD EKE+G+LLREQRRQE DD E+ELNLYRSGSAPPTVEGS
Sbjct: 1   MLSELGRRPMIGANDGSFGDDLEKELGLLLREQRRQEADDREKELNLYRSGSAPPTVEGS 60

Query: 61  LSAVGGLFGAADNNMA-FSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPP 119
           L+AVGGLFG   +  A FS+ +  K  N NGF +E+ELRSDPAYLSYYYSNVNLNPRLPP
Sbjct: 61  LNAVGGLFGGGGHGGASFSDFASGK--NGNGFITEKELRSDPAYLSYYYSNVNLNPRLPP 118

Query: 120 PLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSE 179
           PLLSKEDWR AQRL+G SS+LG + DRRK +G    + +G  RS+FSMPPGF++RKQ SE
Sbjct: 119 PLLSKEDWRSAQRLKGGSSVLGGIGDRRKASG----ADNGNGRSMFSMPPGFESRKQDSE 174

Query: 180 SAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFD 239
              + +  S +WGG GLIGL G G  SKQKSLAEIFQDDLGR T VTG PSRPAS NAF+
Sbjct: 175 VESENVSGSTEWGGGGLIGLQGFGFASKQKSLAEIFQDDLGRTTLVTGPPSRPASCNAFN 234

Query: 240 ESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQ 299
           E++E+I            +L+S  N QG+S+VQ IG PSSY+YAA LG+SLS  TTPDPQ
Sbjct: 235 ENVETID-----------NLRSRVNDQGSSSVQNIGQPSSYSYAAALGASLSGRTTPDPQ 283

Query: 300 LVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVL 359
            VARAPSPCPT IG GR   SEKRGM SSNSF+G+SSG+ ESA+  AA SGMNLSTNGV+
Sbjct: 284 HVARAPSPCPTPIGQGRATTSEKRGMASSNSFNGISSGMRESAEFAAAFSGMNLSTNGVI 343

Query: 360 NEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSD 419
           +E++ LPSQ+EQD++NHQNYL G+QGGQNH+KQN Y+KK                     
Sbjct: 344 DEESHLPSQVEQDVDNHQNYLFGLQGGQNHLKQNTYLKK--------------------- 382

Query: 420 LAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVD-- 477
                               +VELQK AVP+ NSY+KGSPTSTL GGGGL SQYQ++D  
Sbjct: 383 --------------------QVELQKLAVPSGNSYMKGSPTSTLGGGGGLPSQYQHLDGM 422

Query: 478 --NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFAS 535
             +LPNYGLGGY+++P++AS++A QLG GNLPPL+ENVAAASAMA+PGMDSRVLGGG  S
Sbjct: 423 NSSLPNYGLGGYSINPALASMIANQLGTGNLPPLFENVAAASAMAMPGMDSRVLGGGLGS 482

Query: 536 GQNLSATS-ESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYA-AQLAALNDPSVDRN 593
           G NL+A S ESHNL R GS M G ALQ PFVDPVYLQYLR+ EYA  QLAA+NDPSVDR+
Sbjct: 483 GANLTAASLESHNLGRVGSPMAGSALQAPFVDPVYLQYLRTPEYATTQLAAINDPSVDRS 542

Query: 594 FLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSP 653
           +LGNSY+N LE+QKAY    LS QKSQYG PLG KS  SNHHGY G PGFG+GMSYPGSP
Sbjct: 543 YLGNSYLNYLEIQKAY--GFLSSQKSQYGVPLGGKSGSSNHHGYFGNPGFGVGMSYPGSP 600

Query: 654 LANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDA--SMDESFGSSLLEE 710
           LA+PVIPNSPVGPGSPIRHN+ N+RF +GM NLAGG+MGPWHLDA  ++DESF SSLLEE
Sbjct: 601 LASPVIPNSPVGPGSPIRHNELNMRFSSGMSNLAGGIMGPWHLDAGCNIDESFASSLLEE 660

Query: 711 FKSNKTKCFELSEIAGHVVEF 731
           FKSNKTKC ELSEIAGHVVEF
Sbjct: 661 FKSNKTKCLELSEIAGHVVEF 681

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496651|ref|XP_004160189.1| PREDICTED: LOW QUALITY PROTEIN: pumilio homolog 1-like [Cucumis sativus]

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/737 (65%), Positives = 575/737 (78%), Gaps = 40/737 (5%)

Query: 10  MIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSAVGGLFG 69
           M G +EGSFGD+ E EIG+LLREQRRQE DD ERELNLYRSGSAPPTVEGSLSAVGGL G
Sbjct: 1   MFGGNEGSFGDELETEIGLLLREQRRQEADDRERELNLYRSGSAPPTVEGSLSAVGGLVG 60

Query: 70  A-ADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWR 128
             A +  AF+E++ +K  N NGF SEE+LRSDPAYLSYYYSNVNLNPRLPPPL+SKEDW+
Sbjct: 61  GIAGSANAFAEITGSK--NGNGFVSEEQLRSDPAYLSYYYSNVNLNPRLPPPLISKEDWK 118

Query: 129 FAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSESAQDKLRSS 188
            AQRL+G +  LG + D R+ N G  N     NRSLFSMPPGF+ RKQ +E   DK R +
Sbjct: 119 SAQRLKGANLGLGGIGDTRRSNVGPDNI----NRSLFSMPPGFNARKQATEVELDKGRGA 174

Query: 189 ADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDESIESISSA 248
           A+WGGDGLIGL G+GLG+KQKSLAEIFQDD+GR TPVTG PSRPASRNAFD+++E++ + 
Sbjct: 175 AEWGGDGLIGLPGLGLGTKQKSLAEIFQDDMGRTTPVTGLPSRPASRNAFDDNVETMGAT 234

Query: 249 EAELANLRHDL------KSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVA 302
           + ELANLRHDL      ++GAN Q +SA Q+IG PSSYTYAA +G+SLSRS TPDPQLVA
Sbjct: 235 D-ELANLRHDLMISEVMRTGANGQSSSAGQSIGAPSSYTYAAAVGASLSRSNTPDPQLVA 293

Query: 303 RAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVLNED 362
           RAPSPC T IG GRVGASEKR + S NSF+GVSSGINES+DLV+ALSGMNLS +  +NE+
Sbjct: 294 RAPSPCLTPIGGGRVGASEKRNIASPNSFNGVSSGINESSDLVSALSGMNLSPDDTINEE 353

Query: 363 NQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAK 422
             L SQI+QD  N Q Y +G+QGGQNHIKQ  + KK++SG           + S+SDL  
Sbjct: 354 GHLLSQIKQDSNNQQGYAYGLQGGQNHIKQQSFAKKTESGG--------QPRSSFSDLND 405

Query: 423 SNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKG-SPTSTLNGGGGLNSQYQNVD--NL 479
           +NGGG    N+S   DR  EL++ +VP++NSYLKG S  S+ N G    +QYQ+VD  NL
Sbjct: 406 NNGGG---PNSS--RDRHAELKQSSVPSANSYLKGGSHASSHNNG----AQYQHVDGTNL 456

Query: 480 P--NYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQ 537
              N+GL GY++SP +AS+M GQLG+GNLP L+ENVA+ASA+   G++SRVLGG  AS  
Sbjct: 457 TYQNFGLSGYSISPPLASMMPGQLGSGNLPTLFENVASASALGASGLESRVLGGSLASAT 516

Query: 538 NLSATS-ESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLG 596
           NL++++ +SH L + G QM G ALQ  FVDP+YLQYLR+SEYAAQL ALNDPS+DRN+LG
Sbjct: 517 NLTSSAPDSHILGKLGGQMSGNALQASFVDPIYLQYLRTSEYAAQLGALNDPSLDRNYLG 576

Query: 597 NSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLAN 656
           NSYMN LELQKAY+G LLSP KSQY  P   KS  SNHHGY G P FG+ MSYPGSP+A+
Sbjct: 577 NSYMNQLELQKAYVGALLSPPKSQYNVPFSGKSGVSNHHGYFGNPAFGVHMSYPGSPMAS 636

Query: 657 PVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDA-SMDESFGSSLLEEFKSN 714
           PV+ NSPVGPGSPIRHND +LR+ +  RNL GGVM PWHLD  +++ESF SSLLEEFKSN
Sbjct: 637 PVLSNSPVGPGSPIRHNDLHLRYPSAARNL-GGVMSPWHLDVGNINESFSSSLLEEFKSN 695

Query: 715 KTKCFELSEIAGHVVEF 731
           KTKCFELSEIAGHV EF
Sbjct: 696 KTKCFELSEIAGHVFEF 712

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450756|ref|XP_004143128.1| PREDICTED: pumilio homolog 1-like [Cucumis sativus]

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/737 (65%), Positives = 575/737 (78%), Gaps = 40/737 (5%)

Query: 10  MIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSAVGGLFG 69
           M G +EGSFGD+ E EIG+LLREQRRQE DD ERELNLYRSGSAPPTVEGSLSAVGGL G
Sbjct: 1   MFGGNEGSFGDELETEIGLLLREQRRQEADDRERELNLYRSGSAPPTVEGSLSAVGGLVG 60

Query: 70  A-ADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWR 128
             A +  AF+E++ +K  N NGF SEE+LRSDPAYLSYYYSNVNLNPRLPPPL+SKEDW+
Sbjct: 61  GIAGSANAFAEITGSK--NGNGFVSEEQLRSDPAYLSYYYSNVNLNPRLPPPLISKEDWK 118

Query: 129 FAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSESAQDKLRSS 188
            AQRL+G +  LG + D R+ N G  N     NRSLFSMPPGF+ RKQ +E   DK R +
Sbjct: 119 SAQRLKGANLGLGGIGDTRRSNVGPDNI----NRSLFSMPPGFNARKQATEVELDKGRGA 174

Query: 189 ADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDESIESISSA 248
           A+WGGDGLIGL G+GLG+KQKSLAEIFQDD+GR TPVTG PSRPASRNAFD+++E++ + 
Sbjct: 175 AEWGGDGLIGLPGLGLGTKQKSLAEIFQDDMGRTTPVTGLPSRPASRNAFDDNVETMGAT 234

Query: 249 EAELANLRHDL------KSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVA 302
           + ELANLRHDL      ++GAN Q +SA Q+IG PSSYTYAA +G+SLSRS TPDPQLVA
Sbjct: 235 D-ELANLRHDLMISEVMRTGANGQSSSAGQSIGAPSSYTYAAAVGASLSRSNTPDPQLVA 293

Query: 303 RAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVLNED 362
           RAPSPC T IG GRVGASEKR + S NSF+GVSSGINES+DLV+ALSGMNLS +  +NE+
Sbjct: 294 RAPSPCLTPIGGGRVGASEKRNIASPNSFNGVSSGINESSDLVSALSGMNLSPDDTINEE 353

Query: 363 NQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAK 422
             L SQI+QD  N Q Y +G+QGGQNHIKQ  + KK++SG           + S+SDL  
Sbjct: 354 GHLLSQIKQDSNNQQGYAYGLQGGQNHIKQQSFAKKTESGG--------QPRSSFSDLND 405

Query: 423 SNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKG-SPTSTLNGGGGLNSQYQNVD--NL 479
           +NGGG    N+S   DR  EL++ +VP++NSYLKG S  S+ N G    +QYQ+VD  NL
Sbjct: 406 NNGGG---PNSS--RDRHAELKQSSVPSANSYLKGGSHASSHNNG----AQYQHVDGTNL 456

Query: 480 P--NYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQ 537
              N+GL GY++SP +AS+M GQLG+GNLP L+ENVA+ASA+   G++SRVLGG  AS  
Sbjct: 457 TYQNFGLSGYSISPPLASMMPGQLGSGNLPTLFENVASASALGASGLESRVLGGSLASAT 516

Query: 538 NLSATS-ESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLG 596
           NL++++ +SH L + G QM G ALQ  FVDP+YLQYLR+SEYAAQL ALNDPS+DRN+LG
Sbjct: 517 NLTSSAPDSHILGKLGGQMSGNALQASFVDPIYLQYLRTSEYAAQLGALNDPSLDRNYLG 576

Query: 597 NSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLAN 656
           NSYMN LELQKAY+G LLSP KSQY  P   KS  SNHHGY G P FG+ MSYPGSP+A+
Sbjct: 577 NSYMNQLELQKAYVGALLSPPKSQYNVPFSGKSGVSNHHGYFGNPAFGVHMSYPGSPMAS 636

Query: 657 PVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDA-SMDESFGSSLLEEFKSN 714
           PV+ NSPVGPGSPIRHND +LR+ +  RNL GGVM PWHLD  +++ESF SSLLEEFKSN
Sbjct: 637 PVLSNSPVGPGSPIRHNDLHLRYPSAARNL-GGVMSPWHLDVGNINESFSSSLLEEFKSN 695

Query: 715 KTKCFELSEIAGHVVEF 731
           KTKCFELSEIAGHV EF
Sbjct: 696 KTKCFELSEIAGHVFEF 712

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557841|ref|XP_003547219.1| PREDICTED: pumilio homolog 2-like [Glycine max]

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/750 (68%), Positives = 588/750 (78%), Gaps = 42/750 (5%)

Query: 1   MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGS 60
           MLSELG RPM+G +EGSFGD+ EKEIGMLLREQRRQE DD ERELNLYRSGSAPPTVEGS
Sbjct: 1   MLSELGTRPMLGGNEGSFGDELEKEIGMLLREQRRQEVDDRERELNLYRSGSAPPTVEGS 60

Query: 61  LSAVGGLFGAADNNM------AFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLN 114
           LSAVGGLFG             FSE S AK+GN  GFSSEEELRSDPAYLSYYYSNVNLN
Sbjct: 61  LSAVGGLFGGGGGGAGTAAGAVFSEFSGAKSGN--GFSSEEELRSDPAYLSYYYSNVNLN 118

Query: 115 PRLPPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTR 174
           PRLPPPLLSKEDWRF QRL+G +S+LG + DRRKVN    N    G RSLF+ PPGF+ R
Sbjct: 119 PRLPPPLLSKEDWRFTQRLKGGASVLGGIGDRRKVNRADDN----GGRSLFATPPGFNMR 174

Query: 175 KQQSESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPAS 234
           KQ+SE   +  R SA+WGGDGLIGL G+GLGSKQKSLAEIFQDDLG    VTG PSRPAS
Sbjct: 175 KQESEVESENPRGSAEWGGDGLIGLPGLGLGSKQKSLAEIFQDDLGLNASVTGFPSRPAS 234

Query: 235 RNAFDESIESISSAEAELANLRHD------LKSGANVQGTSAVQTIGPPSSYTYAAVLGS 288
           RNAFDE+ + ISS E+ELA+LR D      L+S +NV  +SA Q  GP +SY+YAA LGS
Sbjct: 235 RNAFDENGDIISSVESELAHLRRDSLATDTLRSVSNVPVSSAAQNTGPQASYSYAAALGS 294

Query: 289 SLSRSTTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAAL 348
           SLSRSTTPDPQLVARAPSPCPT IG GRV A+EKRG+ S ++F+GVSSG+NE AD+VAAL
Sbjct: 295 SLSRSTTPDPQLVARAPSPCPTPIGGGRVVAAEKRGINSPDAFNGVSSGVNEPADIVAAL 354

Query: 349 SGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPP 408
           SGMNLS + VL+ D+  PSQ+E D++NHQ YL G+QGGQ+  KQ+ Y+KKS+SG+L    
Sbjct: 355 SGMNLSADDVLDGDSHFPSQVESDVDNHQRYLFGMQGGQDPGKQHAYLKKSESGHLH--- 411

Query: 409 GLQSAKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGG 468
                K +YSD  K+ G   D+NN SL  DR  ELQK AVP +NSY KGSPTS  +GGGG
Sbjct: 412 -----KSAYSDSGKNGGSMSDINNPSL--DRHAELQKCAVPPNNSYFKGSPTSAFSGGGG 464

Query: 469 LNSQYQNVDN----LPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGM 524
           + +QY  +D        YGL GYA +P++AS++A QLG  NLPPL+ENVAAAS MA PGM
Sbjct: 465 VPAQYSPLDGTNSAFTYYGLSGYAGNPALASLVASQLGTSNLPPLFENVAAASVMAAPGM 524

Query: 525 DSRVLGGGFASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSE-YAAQLA 583
           DSR+LGGG +SG  ++A S+ H   R G+Q+ GGALQ PFVDP+YLQY+RSSE  AAQLA
Sbjct: 525 DSRILGGGLSSG--VAAPSDVHGHGRMGNQIAGGALQAPFVDPMYLQYIRSSELAAAQLA 582

Query: 584 ALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGF 643
           ALNDPSVDRN+LGNSYMNLLELQKAYLG LLSPQKSQY  PL +KS GSN HGY G P +
Sbjct: 583 ALNDPSVDRNYLGNSYMNLLELQKAYLGTLLSPQKSQYNVPLSAKSGGSN-HGYYGNPAY 641

Query: 644 GLGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFA-GMRNLAGGVMGPWHLDA-SMDE 701
           GL  SYPGSP+AN  +  SPVG GSPIRHND N+RFA GMRNLA GVMGPWHLDA +MDE
Sbjct: 642 GL--SYPGSPMANS-LSTSPVGSGSPIRHNDLNMRFASGMRNLA-GVMGPWHLDAGNMDE 697

Query: 702 SFGSSLLEEFKSNKTKCFELSEIAGHVVEF 731
           +F SSLLEEFKSNKTKCFELSEI+GHVVEF
Sbjct: 698 NFASSLLEEFKSNKTKCFELSEISGHVVEF 727

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538984|ref|XP_003537980.1| PREDICTED: pumilio homolog 2-like [Glycine max]

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/746 (66%), Positives = 573/746 (76%), Gaps = 42/746 (5%)

Query: 1   MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGS 60
           MLSELGRRPM+G++EGSFGD+ EKEIGMLLREQRRQE DD ERELN+YRSGSAPPTVEGS
Sbjct: 1   MLSELGRRPMLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIYRSGSAPPTVEGS 60

Query: 61  LSAVGGLFGAADNN------MAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLN 114
           LSAVGGLFG A         +AFSE    K  + NG +SEEELRSDPAYLSYYYSNVNLN
Sbjct: 61  LSAVGGLFGGAAGAPATGAPVAFSEFQGTK--DVNGITSEEELRSDPAYLSYYYSNVNLN 118

Query: 115 PRLPPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTR 174
           PRLPPPLLSKEDWRF QRL+G +S LG + DRRKVN    N    G R LF  PPGF+ R
Sbjct: 119 PRLPPPLLSKEDWRFQQRLKGGASALGGIGDRRKVNRTDDN----GGRLLFPTPPGFNMR 174

Query: 175 KQQSESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPAS 234
           KQ+SE   +K R SA+WGGDGLIGL G+G  SKQKS AEIFQDDLG  T +   PSRP+S
Sbjct: 175 KQESEVDNEKTRGSAEWGGDGLIGLPGLG-LSKQKSFAEIFQDDLGHNTSIARLPSRPSS 233

Query: 235 RNAFDESIESISSAEAELANLRHDLKSGANV--QGTSAVQTIGPPSSYTYAAVLGSSLSR 292
           RNAFDE+  S SSA+AELA++ H   + A+V   G+SA Q +GPP+SY+YAA +GSSLSR
Sbjct: 234 RNAFDENDIS-SSADAELAHV-HRESTPADVLRSGSSAAQNVGPPASYSYAAAVGSSLSR 291

Query: 293 STTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMN 352
           STTPDPQLVARAPSPC T IG GR  AS+KR + S ++F+GVSSGINESADLVAALS MN
Sbjct: 292 STTPDPQLVARAPSPCITPIGGGRAIASDKRAIASQDAFNGVSSGINESADLVAALSVMN 351

Query: 353 LSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQS 412
           LS + VL+ +N LPSQ+E D++NHQ YL G QGGQ H KQ+ Y+KKS+S +LQ       
Sbjct: 352 LSADDVLDGENHLPSQVESDVDNHQRYLFGRQGGQEHGKQHAYLKKSESAHLQ------- 404

Query: 413 AKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQ 472
                 +   S+  G DLNN SL  DR+VELQK  VP++NSY KGSPTS  + GG +  Q
Sbjct: 405 ------NSRASSRSGSDLNNPSL--DRQVELQKSTVPSNNSYFKGSPTSHFSRGGSMPPQ 456

Query: 473 YQNVD----NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRV 528
           YQ +D    +  NYGL GYA +P++AS+M  QLG GNLPPL+ENVAAASAMA PGMD R+
Sbjct: 457 YQPLDSTNSSFGNYGLSGYAGNPALASLMTNQLGTGNLPPLFENVAAASAMASPGMDLRI 516

Query: 529 LGGGFASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEY-AAQLAALND 587
           LGG        +A S+ HNL R G+Q+ G ALQ PFVDP+YLQYLR+SE+ AAQLAALND
Sbjct: 517 LGG--GLASGAAAPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEFAAAQLAALND 574

Query: 588 PSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGM 647
           PSVDRN+LGNSYMNLLELQKAYLG +LSPQKSQY  PLG KS  S  HGY G P +G+GM
Sbjct: 575 PSVDRNYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGM 634

Query: 648 SYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFA-GMRNLAGGVMGPWHLDA-SMDESFGS 705
           SYPGSP+AN V+  SPVG  SP+RHN+ N+RFA GMRNLA GVMGPWH D  ++DESF S
Sbjct: 635 SYPGSPMANSVVSTSPVGSASPVRHNELNMRFASGMRNLA-GVMGPWHADTGNIDESFAS 693

Query: 706 SLLEEFKSNKTKCFELSEIAGHVVEF 731
           SLLEEFK+NKTKCFELSEIAGHVVEF
Sbjct: 694 SLLEEFKTNKTKCFELSEIAGHVVEF 719

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454231|ref|XP_003597396.1| Pumilio-like protein [Medicago truncatula] gi|87241276|gb|ABD33134.1| Nucleic acid binding NABP [Medicago truncatula] gi|355486444|gb|AES67647.1| Pumilio-like protein [Medicago truncatula]

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/749 (66%), Positives = 584/749 (77%), Gaps = 47/749 (6%)

Query: 1   MLSELGRRPMIGN-SEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEG 59
           MLS++GRRP+IG  +EGSFGD+FEKEIGMLLR+QRR E DD E ELN+YRSGSAPPTVEG
Sbjct: 1   MLSDMGRRPVIGGGNEGSFGDEFEKEIGMLLRDQRRHEVDDHEPELNMYRSGSAPPTVEG 60

Query: 60  SLSAVGGLFGAADNNMA-FSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLP 118
           SLSAVGGLFG      A  SE S       NGF SEEELRSDPAYL YYYSNVNLNPRLP
Sbjct: 61  SLSAVGGLFGGGSTAAAAVSEFS------GNGFGSEEELRSDPAYLQYYYSNVNLNPRLP 114

Query: 119 PPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQS 178
           PPLLSKEDWRF+QRL+G +S +G + DRRKVNG   N G    R++F+ PPGF+ RK+++
Sbjct: 115 PPLLSKEDWRFSQRLKGGASAIGGIGDRRKVNGADENGG----RAVFATPPGFNNRKRET 170

Query: 179 ESAQD-KLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNA 237
           E   D K+R SA+WGGDGLIGL G+GLG+KQKSLAEIFQDD+G  T VTG PSRPASRN 
Sbjct: 171 EVVADEKIRGSAEWGGDGLIGLPGLGLGTKQKSLAEIFQDDMGHNTSVTGFPSRPASRNT 230

Query: 238 FDESIESISSAEAELANLRHD------LKSGANVQGTSAVQTIGPPSSYTYAAVLG-SSL 290
           FDE++E  SSAEAELA+LRHD      L+ G+NVQG+ A Q  GP  SY+YAA LG SSL
Sbjct: 231 FDENVEITSSAEAELAHLRHDSSATDGLRFGSNVQGSPASQNAGPQVSYSYAAALGGSSL 290

Query: 291 SRSTTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSG 350
           SRSTTPDPQ VARAPSPCPT IGSGRV A+EKRG+TS +      SGIN SAD+ +ALSG
Sbjct: 291 SRSTTPDPQHVARAPSPCPTPIGSGRVVAAEKRGITSPDV-----SGINGSADIASALSG 345

Query: 351 MNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGL 410
           MNLST+  L  DN  PSQ+E D+ N+Q YL G+QGGQ+H KQ+ Y+KK++SG+  MP   
Sbjct: 346 MNLSTDDALEGDNHFPSQVESDVNNYQRYLFGMQGGQDHGKQHAYLKKAESGH--MP--- 400

Query: 411 QSAKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLN 470
              K ++SD  K +G G D+ + SL  DR+VE QK AV  +N Y  GSP S  +GGGGL 
Sbjct: 401 ---KTAHSDSGKRSGSGSDMRSPSL--DRQVEHQKSAVSPNNLYFNGSPGSPYSGGGGLP 455

Query: 471 SQYQNVD--NLP--NYGL-GGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMD 525
           +QYQ  D  N P  NYGL GGYA +P++AS MA QLG GN+PPL+ENVAAASAM  PGMD
Sbjct: 456 AQYQPSDGSNSPFNNYGLSGGYAGNPAVASFMANQLGTGNMPPLFENVAAASAMVSPGMD 515

Query: 526 SRVLGGGFASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAA-QLAA 584
           SR+LGGG  SG  +++ S+ H L+R G+Q+ GGALQ P+VDP+YLQY+R+ EYAA QLAA
Sbjct: 516 SRILGGGLPSG--VASPSDVHVLSRMGNQIAGGALQSPYVDPMYLQYMRTPEYAAAQLAA 573

Query: 585 LNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFG 644
           LNDPSVDRN+LGNSYMNLLELQKAYLG LLSPQKSQY  PLG KS GSNHHGY G P +G
Sbjct: 574 LNDPSVDRNYLGNSYMNLLELQKAYLGSLLSPQKSQYNVPLGGKSGGSNHHGYYGNPTYG 633

Query: 645 LGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFA-GMRNLAGGVMGPWHLDA-SMDES 702
           +G+SYPGSP+AN  +  SPVG GSPIRHND N+ FA GMRN+A GVM PWHLDA ++DE+
Sbjct: 634 VGLSYPGSPMANS-LSTSPVGSGSPIRHNDLNMHFASGMRNVA-GVMAPWHLDAVNVDEN 691

Query: 703 FGSSLLEEFKSNKTKCFELSEIAGHVVEF 731
           F SSLLEEFKSNKTKCFELSEI+GHVVEF
Sbjct: 692 FASSLLEEFKSNKTKCFELSEISGHVVEF 720

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472855|ref|XP_003606712.1| Pumilio-like protein [Medicago truncatula] gi|355507767|gb|AES88909.1| Pumilio-like protein [Medicago truncatula]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/742 (65%), Positives = 567/742 (76%), Gaps = 55/742 (7%)

Query: 1   MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGS 60
           MLSELGRRP+IGN+EG FGD+ EKEIGMLLREQRRQE DD ERELN++RSGSAPPTVEGS
Sbjct: 1   MLSELGRRPVIGNNEGCFGDELEKEIGMLLREQRRQEGDDRERELNIFRSGSAPPTVEGS 60

Query: 61  LSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPP 120
           L+AVGGLFGA      FS+    K  + NG  SEEELRSDPAYL YYYSNVNLNPRLPPP
Sbjct: 61  LNAVGGLFGAGGVAGGFSDFPGNK--DVNGVVSEEELRSDPAYLQYYYSNVNLNPRLPPP 118

Query: 121 LLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQ-SE 179
           LLSKEDWRF QRL+G +S +G + DRRK N     +   G RS+FS PPGF+ RKQ+ SE
Sbjct: 119 LLSKEDWRFQQRLKGGASAVGGIGDRRKGN----MTDDSGGRSMFSTPPGFNFRKQERSE 174

Query: 180 SAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFD 239
              +K R SA+WGGDGLIGL  +GL SKQKSLAEIFQDD+ R TPVTG PSRPASRNAFD
Sbjct: 175 VENEKTRGSAEWGGDGLIGLPSLGLRSKQKSLAEIFQDDMERNTPVTGLPSRPASRNAFD 234

Query: 240 ESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLG-SSLSRSTTPDP 298
           E+++ ++++EAELA+          VQG+SA Q IG P+SY+YAA LG SSLSRSTTPDP
Sbjct: 235 ENVDKVNTSEAELAH----------VQGSSATQNIGLPASYSYAAALGGSSLSRSTTPDP 284

Query: 299 QLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGV 358
           Q +ARAPSPC T IG GR  AS+KRG+ S +SF+GVSSG+NESADLVAALSGMNLS +  
Sbjct: 285 QHIARAPSPCLTPIGGGRNVASDKRGIVSPDSFNGVSSGMNESADLVAALSGMNLSAD-- 342

Query: 359 LNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYS 418
             +++ LPSQ+E D++NHQ YL G+QGGQ+H KQ+ Y+KKS+SG+LQ      S+  S S
Sbjct: 343 --DEDHLPSQVESDVDNHQRYLFGMQGGQDHGKQHPYLKKSESGHLQ------SSGKSRS 394

Query: 419 DLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVD- 477
           +L          NN SL   R+ ELQ    P +NSY KGSPTS  +GGG + +QYQ++D 
Sbjct: 395 EL----------NNLSL--HRQAELQNSTAPLNNSYFKGSPTSHFSGGGNMQAQYQSIDG 442

Query: 478 ---NLPNYGLGGYALSPS-MASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF 533
              +  NYGL GY  +P+ + S+M  Q G  NLPP++ENVAAAS MA PGMDSR+LGG  
Sbjct: 443 MNSSFTNYGLSGYGGNPAALTSLMTNQYGTSNLPPMFENVAAASMMASPGMDSRILGG-- 500

Query: 534 ASGQNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAA-QLAALNDPSVDR 592
                  + S+ HNL R G+Q+ GGALQ PFVDP+YLQY+R+SEYAA QLAALNDPSVDR
Sbjct: 501 GLASGAGSPSDLHNLGRMGNQIAGGALQAPFVDPMYLQYMRTSEYAAAQLAALNDPSVDR 560

Query: 593 NFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGS 652
           N+LGNSYMNLLELQKAYLG +LSPQKSQY   LG KS  SNHHGY G P +G+G+SYPGS
Sbjct: 561 NYLGNSYMNLLELQKAYLGSVLSPQKSQYNAQLGGKSGNSNHHGYYGNPAYGVGLSYPGS 620

Query: 653 PLANPVIPNSPVGPGSPIRHND-PNLRFA-GMRNLAGGVMGPWHLDA-SMDESFGSSLLE 709
           P+AN     SPVG GSPIRHND  N+RFA GMRNLA GVMGPWH+D+ +MDESF SSLLE
Sbjct: 621 PMAN---SGSPVGSGSPIRHNDLNNMRFASGMRNLA-GVMGPWHVDSGNMDESFASSLLE 676

Query: 710 EFKSNKTKCFELSEIAGHVVEF 731
           EFKSNK KCFELSEIAGHVVEF
Sbjct: 677 EFKSNKAKCFELSEIAGHVVEF 698

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	749
TAIR|locus:2043187	972	PUM2 "pumilio 2" [Arabidopsis	0.464	0.358	0.479	1.5e-127
TAIR|locus:2043182	968	PUM1 "pumilio 1" [Arabidopsis	0.447	0.346	0.485	8.2e-124
TAIR|locus:2043047	964	PUM3 "pumilio 3" [Arabidopsis	0.449	0.349	0.465	9.3e-121
TAIR|locus:2076324	1003	PUM4 "pumilio 4" [Arabidopsis	0.778	0.581	0.232	3.1e-20
TAIR|locus:2087560	961	PUM5 "pumilio 5" [Arabidopsis	0.244	0.190	0.317	6.2e-13
TAIR|locus:2117552	861	PUM6 "pumilio 6" [Arabidopsis	0.052	0.045	0.452	0.00028

TAIR|locus:2043187 PUM2 "pumilio 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
 Identities = 179/373 (47%), Positives = 234/373 (62%)

Query:   364 QLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNL-QMPPGLQSAKMSYSDLAK 422
             ++ S  +++  N   +  G+    + +     M  S SG L +     Q  +   + +  
Sbjct:   290 RVSSNDKRNTSNQSPFNGGLNESSDLVNALSGMNLSGSGGLDERGQAEQDVEKVRNYMFG 349

Query:   423 SNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNY 482
               GG  ++N      ++  + QK      NS L+G+  ST N GGG+ +QYQ++D+ PNY
Sbjct:   350 LQGGHNEVNQHGF-PNKSDQAQKATGLLRNSQLRGAQGSTYNDGGGVATQYQHLDS-PNY 407

Query:   483 GLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASGQNLSA 541
              L  Y L+P++AS+MA QLG  N  P+YEN +AASAM   GMDSR+ GGG+ +SGQNLS 
Sbjct:   408 CLNNYGLNPAVASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHGGGYVSSGQNLS- 466

Query:   542 TSESHNLNRAGSQM-GGGA-LQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSY 599
               ES NL R  ++M GGG  LQ    DP+Y QY      A  L  LNDPS+D NF+GNSY
Sbjct:   467 --ESRNLGRFSNRMMGGGTGLQSHMADPMYHQY------ADSLDLLNDPSMDVNFMGNSY 518

Query:   600 MNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVI 659
             MN+LELQ+AYLG     QKSQYG P   KS   N H   G+P FG   SYPGSPLA+ ++
Sbjct:   519 MNMLELQRAYLGA----QKSQYGVPY--KSGSPNSHTDYGSPTFG---SYPGSPLAHHLL 569

Query:   660 PNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKC 718
             PNS V P SP+R  + N+R+ +  RN AGGVMG WH+DAS+DE FGSS+LEEFKSNKT+ 
Sbjct:   570 PNSLVSPCSPMRRGEVNMRYPSATRNYAGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRG 629

Query:   719 FELSEIAGHVVEF 731
             FEL+EIAGHVVEF
Sbjct:   630 FELAEIAGHVVEF 642

GO:0003723 "RNA binding" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0003729 "mRNA binding" evidence=IPI

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2043182 PUM1 "pumilio 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.2e-124, Sum P(3) = 8.2e-124
 Identities = 179/369 (48%), Positives = 231/369 (62%)

Query:   375 NHQNYLHGIQGGQNHIKQNKYMKKSDSG-NLQMPPGLQSAKMSYSDLAKSNG------GG 427
             ++Q+  +G+  G N   ++  +  + SG NL    GL     +  D+ K         GG
Sbjct:   292 SNQSPFNGVTSGLN---ESSDLVNALSGLNLSCSVGLDDRSQAEQDVEKVRNYMFGLQGG 348

Query:   428 LDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGY 487
              +  N     ++  +  K      NS L+G   S  NGG GL + YQ +D+ PNY L  Y
Sbjct:   349 HNEVNQHEFPNKSDQAHKATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDS-PNYCLNNY 407

Query:   488 ALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASGQNLSATSESH 546
             AL+P++AS+MA QLG  N  P+Y+NV   SA+   GMDSR  G GF +SGQNLS   ES 
Sbjct:   408 ALNPAVASMMANQLGNNNFAPMYDNV---SALGFSGMDSRHHGRGFVSSGQNLS---ESR 461

Query:   547 NLNRAGSQM-GGGA-LQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLG-NSYMNLL 603
             NL R  ++M GGGA LQ   VDP+Y      ++YA  L  LNDPS+DRNF+G +SYM++L
Sbjct:   462 NLGRFSNRMMGGGAGLQSHMVDPMY------NQYADSLDLLNDPSMDRNFMGGSSYMDML 515

Query:   604 ELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSP 663
             ELQ+AYLG     QKSQYG P   KS   N H Y G+P FG  MSYPGSPLA+  +PNS 
Sbjct:   516 ELQRAYLGA----QKSQYGVPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSL 569

Query:   664 VGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELS 722
             + P SP+R ++ N+RF +  RN +GG+MG WH+DAS DE FGSS+LEEFKSNKT+ FELS
Sbjct:   570 MSPYSPMRRDEVNMRFPSATRNYSGGLMGSWHMDASFDEGFGSSMLEEFKSNKTRGFELS 629

Query:   723 EIAGHVVEF 731
             EIAGHVVEF
Sbjct:   630 EIAGHVVEF 638

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0003729 "mRNA binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2043047 PUM3 "pumilio 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 9.3e-121, Sum P(3) = 9.3e-121
 Identities = 171/367 (46%), Positives = 223/367 (60%)

Query:   375 NHQNYLHGIQGGQNHIKQNKYMKKSDSG-NLQMPPGLQSAKMSYSDLAKSNGGGLDLNNA 433
             ++Q+  +G+  G N   ++  +  + SG NL    GL     +  D+ K       L + 
Sbjct:   288 SNQSPFNGVTSGLN---ESSDLVNALSGLNLSGTGGLDERGQAEQDVEKVRNYMFGLQDG 344

Query:   434 SLLTD-----RRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGYA 488
                 +      R +  +      NS ++GS  S  N G G+ + YQ+ D+ PNY    YA
Sbjct:   345 HNEVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSGVANPYQHHDS-PNY----YA 399

Query:   489 LSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASGQNLSATSESHN 547
             L+P++AS+MA QLG  N  P+YEN  A++ +    MDSR+ GG F +SGQNLS   ES N
Sbjct:   400 LNPAVASMMANQLGTNNYSPMYEN--ASATLGYSAMDSRLHGGSFVSSGQNLS---ESRN 454

Query:   548 LNRAGSQMGGGALQFP--FVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLEL 605
             + R G++M  G    P    DP+Y QY R SE A     LNDPS+DRN+ GNSYMN+LE+
Sbjct:   455 IGRVGNRMMEGGTGHPSHLADPMYHQYARFSENADSFDLLNDPSMDRNY-GNSYMNMLEI 513

Query:   606 QKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVG 665
             Q+AYLG     QKSQYG P   KS   N H Y G+P FG  MSYPGSPLA+  +PNS + 
Sbjct:   514 QRAYLG----SQKSQYGLPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMS 567

Query:   666 PGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELSEI 724
             P SP+R  + N+R+ A  RN  GGVMG WH+DAS+DE FGSS+LEEFKSNKT+ FELSEI
Sbjct:   568 PYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRGFELSEI 627

Query:   725 AGHVVEF 731
             AGHVVEF
Sbjct:   628 AGHVVEF 634

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0003729 "mRNA binding" evidence=IDA

TAIR|locus:2076324 PUM4 "pumilio 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 150/644 (23%), Positives = 256/644 (39%)

Query:    20 DDFEKEIGMLLREQRRQET--DDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADNNMAF 77
             D F++E+  LL++ R Q++   + ER+++++RSGSAPPTVEG L A+   +   +NN   
Sbjct:    26 DRFQRELESLLQQHRNQQSFGRERERDIDVHRSGSAPPTVEGLLRAMDNQY-LNNNNSDH 84

Query:    78 SELSRAKA-GNNNGFS--SEEELRSDPAXXXXXXXXXXXXXXXXXXXXSKEDWRFAQRLR 134
              ++    +   +NG    S++ELR  P                     S+EDWR AQR  
Sbjct:    85 RDVGNISSITTSNGVELLSDDELRWHPEYLSYYYSNEHSNPRLPPPLLSREDWRVAQRFH 144

Query:   135 GESSMLGELDDRRKVXXXXXXXXXXXXXXLFSMPPG----------FDTRKQQSESAQDK 184
                S+   + + RK               LFS+ PG           + R   ++    K
Sbjct:   145 NSESVFDPVGEWRK-----KTVEVDNSSSLFSVQPGVPVEQAENDLMELRNAVAQGRSQK 199

Query:   185 LRSSADWXXXXXXXXXXXXXXXKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDXXXXX 244
             ++                    ++KS A+I Q+ L R   +    SRPAS N F      
Sbjct:   200 VQRLDQGREDLIGLSGYSGLGPRRKSFADILQEGLERDAALGSQLSRPASCNTFRDMKDA 259

Query:   245 XXXXXXXLANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVARA 304
                           L    ++  T+       P++    + + S + R+ TPD  LV R+
Sbjct:   260 AVLSNFSAGGFDSPLAFHDSLHSTAK----NSPNTML-GSTMSSPVPRNRTPDSHLVGRS 314

Query:   305 PSPCPTAIGSGRVGASEKRGMTXXXXXXXXXXGINESADLVAALSGMNLSTNGVLNEDNQ 364
              +     IG+ RVG  EK+                 +AD+   LS +N+S    + E N 
Sbjct:   315 TASGLPPIGT-RVGPVEKKNTFGTAIQNCESY---TAADVADTLSRLNMSEMSQVKE-NH 369

Query:   365 LPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSN 424
             + SQ++ ++EN  + +  I  G  H    K +++ ++   +    L SA  +Y  ++   
Sbjct:   370 MQSQLQVELENQSDVMRYIPNG--H---KKALRQQNTAETK--DHLFSA--NYGGMS--- 417

Query:   425 GGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGG--GLNSQYQNVDNLPNY 482
             G G  L  +++ +  +V + K    +++ Y   S  S L   G   +N +  N++     
Sbjct:   418 GYGASLGASTVGSHGQVNIPKRTSSSASLY-STSDHSRLGSVGLSDVNIRNGNINGTDFS 476

Query:   483 GLGGYALSP---SMA---SVMAGQL-GAGNLPPLYENV-AAASAMAVPGMDSRVLGGGFA 534
               GGY       S+A   S     L G G+   L   +   AS +  P MD       + 
Sbjct:   477 TAGGYMAKNKLNSLAEHYSAEGSHLTGDGDRQSLNRLINQVASELHSPVMDPHY--SQYL 534

Query:   535 SGQNLSATSESHNL--NRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDR 592
                + +A    H+L  N  G+  G  A ++  +     +    +  AA       PS D 
Sbjct:   535 HTASSTAAPIDHSLIRNNFGTSNGDTANEYLAMLLAQNRQQLGNLNAANSRFFESPSYDL 594

Query:   593 N--FLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNH 634
                +LGN   +  +  + +  + +S   S    P G    GS+H
Sbjct:   595 GNMYLGNHLPSPSKNSRNFQNMRMSQSASMMKVPFGGLQ-GSSH 637

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0003729 "mRNA binding" evidence=IDA

TAIR|locus:2087560 PUM5 "pumilio 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 6.2e-13, Sum P(3) = 6.2e-13
 Identities = 65/205 (31%), Positives = 90/205 (43%)

Query:   538 NLSATSESHNLNRAGSQMGGGALQFP-FVDPVYLQYLRSSE---YAAQLAALNDPSVDRN 593
             ++S+TS  +N  R    +       P  VDP  LQY + ++   YA    +  D    ++
Sbjct:   443 DISSTSSGYNNPRLLPGVSSSGQNIPSLVDPFQLQYFQQAQVDAYAPPFQSSTDSFGQKD 502

Query:   594 FLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSP 653
                  YM   E        L SP    YG  L S     N+  +   PG  +   YPGSP
Sbjct:   503 QQAVGYMANHE-------PLNSPLSPGYG--LQSPRHMGNY--FAVPPGVRVMPQYPGSP 551

Query:   654 LANPVIPNSPVGPGSPI--RHNDPNLRFAGMRNLAGGVMGPWHLD---AS--MDESFGSS 706
             LA+PV+P+SPVG       R ++      G     G   G W  +   AS  +D+    S
Sbjct:   552 LASPVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGIYPGGWQGNRGGASSIVDDLKRHS 611

Query:   707 LLEEFKSNKTKCFELSEIAGHVVEF 731
              L+E KS   +  ELS+IAG VVEF
Sbjct:   612 FLDELKSPNARKLELSDIAGRVVEF 636

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0003729 "mRNA binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2117552 PUM6 "pumilio 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00028, Sum P(4) = 0.00028
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query:   693 WHLDASMDESFGSSL---LEEFKSNKTKCFELSEIAGHVVEF 731
             W    S++ + G  L   LEE KS K + F+LS+I GH+VEF
Sbjct:   499 WQPQGSLEGANGPRLCNFLEELKSGKGRRFDLSDITGHIVEF 540

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003729 "mRNA binding" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZW06	PUM2_ARATH	No assigned EC number	0.5230	0.8477	0.6532	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	749
pfam07990	365	pfam07990, NABP, Nucleic acid binding protein NABP	1e-134

>gnl|CDD|219685 pfam07990, NABP, Nucleic acid binding protein NABP

 Score =  400 bits (1028), Expect = e-134
 Identities = 236/424 (55%), Positives = 284/424 (66%), Gaps = 63/424 (14%)

Query: 303 RAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVLNED 362
           R PSPC   IG  RVG+++K+    S+SF+GVSSG+NESADL AALSGMNLS +G L+ +
Sbjct: 1   RVPSPCLPPIGV-RVGSNDKKNTGGSSSFNGVSSGLNESADLAAALSGMNLSGSGALDGE 59

Query: 363 NQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAK 422
           N + SQ EQD+EN +NYL G+QGGQN+  Q+ + KK+D G+L  P   QS   S S    
Sbjct: 60  NHMQSQAEQDVENQRNYLFGLQGGQNNGNQHSFAKKADQGHLSAPEYSQSGNGSGS---- 115

Query: 423 SNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNY 482
                                                               N  +L NY
Sbjct: 116 ------------------------------------------------KDPINSPHL-NY 126

Query: 483 GLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQNLSAT 542
           GLGGY+L+P++AS+MA QLGAGN PP ++N AA SAMA PG+DSR LGGG +S  N    
Sbjct: 127 GLGGYSLNPAVASMMANQLGAGNFPP-FDNSAAGSAMASPGIDSRSLGGGLSSSGNQG-L 184

Query: 543 SESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQ-LAALNDPSVDRNFLGNSYMN 601
           S+S NLNR G+QMGG  LQ P +DP+YLQYLR++EYAAQ  AALNDPS+DRNFLG+SYM+
Sbjct: 185 SDSQNLNRLGNQMGGSGLQSPLMDPMYLQYLRAAEYAAQSAAALNDPSMDRNFLGSSYMD 244

Query: 602 LLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPN 661
           LL LQKAYLG LL+ QKSQYG P   KS   N+HGY G P FG+GMSYPGSPLA+PV+P+
Sbjct: 245 LLGLQKAYLGALLAQQKSQYGVPY--KSGSPNNHGYYGNPAFGVGMSYPGSPLASPVLPS 302

Query: 662 SPVGPGSPIRHNDPNLRFA-GMRNLAGGVMGPWHLDA--SMDESFGSSLLEEFKSNKTKC 718
           SPVGPGSP+R  + N+RF  GMRN  GGVMG WH DA  SMDE FGSSLLEEFKSNKT+ 
Sbjct: 303 SPVGPGSPLRRGERNMRFPSGMRNY-GGVMGSWHSDAGGSMDEGFGSSLLEEFKSNKTRS 361

Query: 719 FELS 722
           FELS
Sbjct: 362 FELS 365

Many members of this family are putative nucleic acid binding proteins. One member of this family has been partially characterized and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain. Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	749
PF07990	385	NABP: Nucleic acid binding protein NABP; InterPro:	100.0
KOG1488	503	consensus Translational repressor Pumilio/PUF3 and	99.11
smart00025	36	Pumilio Pumilio-like repeats. Pumilio-like repeats	94.42
PF00806	35	PUF: Pumilio-family RNA binding repeat; InterPro:	94.11
COG5099	777	RNA-binding protein of the Puf family, translation	87.39

>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins

Probab=100.00  E-value=8.5e-108  Score=870.96  Aligned_cols=381  Identities=65%  Similarity=1.045  Sum_probs=368.1

Q ss_pred             cCCCCCCCCCCccccccCCCCCCCCCCCcCCCCCCCCchHHHHHHhcCCccCCCCCCCcCCCCchhHHHhHhhhhccccC
Q 039493          303 RAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHG  382 (749)
Q Consensus       303 R~psp~lppiG~~~~~~~~k~~~~~s~~~~~~ss~~~e~adl~salsglnlS~~~~~~~e~~~~sq~q~~~~~q~~~~~~  382 (749)
                      |||||||||||+ |+.+.|||++.++++|++++|+++|+|||+|||||||||+++++++|+|+|+|+|+|||||++|+|+
T Consensus         1 R~PSp~lpPIG~-Rv~s~eKk~~~g~~sfn~~SS~~~e~aDlvAALSGLNLS~~~~~~ee~~~qSqlqqdvdnqq~~lf~   79 (385)
T PF07990_consen    1 RAPSPCLPPIGV-RVGSVEKKNNGGSSSFNGVSSGINESADLVAALSGLNLSGNRAADEENHMQSQLQQDVDNQQDFLFN   79 (385)
T ss_pred             CCCCCCCCCccc-cccchhcccccCCcccccccCCCCcHHHHHHHHhcCCcCcCccccccccchHHHHHHHHHhhhhhhc
Confidence            899999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccchhhhhhcccCCCCCCCCCCcCCCcccchhhccCCCCCCCCcccccccccccccCCCCCCCCcccCCCCCcc
Q 039493          383 IQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTST  462 (749)
Q Consensus       383 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~q~~~~~y~~~~~~~~~~~~~n~~kl~~d~Q~~l~~~~~~~~~~y~~~~~~s~  462 (749)
                      +|++|+|++||.|++++|++|+++                                  +++++..+++.++|+|++.+++
T Consensus        80 ~q~~q~~~~Qq~~~~~se~~~l~~----------------------------------~e~~~a~~~~~~s~~~~~~~s~  125 (385)
T PF07990_consen   80 VQGGQNQGNQQSYMKKSESGHLNA----------------------------------PELQKAAFPSGNSYFKNSNASK  125 (385)
T ss_pred             CccchhhhhhHHHhhccchhhccc----------------------------------cccccccCCCccccccCCCccc
Confidence            999999999999999999999974                                  3567778888999999999999


Q ss_pred             cCCCCCCCCCCcCCCCCCCCCCCCccCCCCchhhhcccCCCCCCCccchhhhhhhhccCCCCCcccCCCCCCCCcccccc
Q 039493          463 LNGGGGLNSQYQNVDNLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQNLSAT  542 (749)
Q Consensus       463 ~s~~g~~~~~YqNl~~~~~yg~~GY~~n~~~~s~m~~~~~~g~~p~~f~~~a~asa~a~pg~~sr~~g~~~~s~~nl~~~  542 (749)
                      ++.++..+..||+++. ++|.++||++||++++||.+++++|++|++||+++++++++.+++|+|++|+++.++.+ ++.
T Consensus       126 ~~~~g~~~~~~q~~~~-~n~~~~gy~~n~~~~s~~~~~~~~gn~p~~fd~~~~~s~~~~~~~~s~~~g~~~~s~~~-~~~  203 (385)
T PF07990_consen  126 LSGGGGSPFPYQNSDN-PNSSFGGYALNPALPSMMASQLNNGNIPPLFDNSAAASALASPGMDSRSLGGGLDSGGN-QGA  203 (385)
T ss_pred             ccCCCCCCCcccCCCc-ccccccccccCccchhhhhccccCCCCCccccccccchhhccCCCcccccCCccccccc-ccc
Confidence            9999998999999665 78888999999999999999999999999999999999999999999999999999998 788


Q ss_pred             cccccccccccCCCCCCCCCCCCChhhHhhhccch-HHHHHhhcCCCCcCCcCCCCCccchHHHHHHhhhcccccccccC
Q 039493          543 SESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSE-YAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQY  621 (749)
Q Consensus       543 sd~~nl~r~g~q~~~~~lQ~p~~DP~Y~QYlq~~~-~~~~~a~~~dP~~~Rn~~g~s~~dl~~~QKayl~~lLs~QK~Qy  621 (749)
                      +|+|||+|+|||++|.+||+||+||+|+||||++| +++++++++||+++|||+|++|+|++++|||||++||++||+||
T Consensus       204 ~d~~~l~r~gnq~~g~~lq~~~~DP~Y~Qylq~~~~aa~~~a~~~dP~~~R~~~G~s~~dl~~~qKayl~~lL~~QK~Qy  283 (385)
T PF07990_consen  204 SDGQNLNRFGNQVAGSALQSPFVDPLYLQYLQAPEYAAQQAAAQNDPSVDRNYMGSSYMDLLGLQKAYLEALLAQQKSQY  283 (385)
T ss_pred             cchhhhhhhcccccCcccCCCCCCchHHHHhccccchhhhhhccCCcccccCCcCccccchHHHHHHHHHHHHHHHHHhh
Confidence            99999999999997799999999999999999999 88899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc-ccccCCCCCCCCCcccC--C
Q 039493          622 GGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRFA-GMRNLAGGVMGPWHLDA--S  698 (749)
Q Consensus       622 ~~p~l~Ks~G~~~~~Y~G~P~~G~~M~YpgSpl~sPvlp~sp~g~gsP~~~g~rn~r~~-~~Rn~~Gg~~gsw~~~~--~  698 (749)
                      |+|+ .|+ |+++++|||+|.||++|+||||||++||||+||+|+|+||||+||+|||+ +|||++||++|+||.|+  +
T Consensus       284 ~~P~-~~~-~~~n~~y~gnp~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~~R~~s~mRn~~GG~~GsW~~d~g~~  361 (385)
T PF07990_consen  284 GVPL-KKS-GSMNHGYYGNPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERNMRFPSGMRNSSGGSMGSWHSDAGGN  361 (385)
T ss_pred             CCcc-ccC-CCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccccccCccccccccccccccccccccc
Confidence            9999 776 88999999999999999999999999999999999999999999999999 99999999999999999  7


Q ss_pred             CCCccccchHHHhhhCCCCceeec
Q 039493          699 MDESFGSSLLEEFKSNKTKCFELS  722 (749)
Q Consensus       699 ~~~~~~s~lLeefr~nk~k~~EL~  722 (749)
                      +|+++.|.||||||+||+|+|||+
T Consensus       362 ~d~~~~sSlLEEFKsNKtr~FELS  385 (385)
T PF07990_consen  362 MDENFASSLLEEFKSNKTRSFELS  385 (385)
T ss_pred             ccccchhHHHHHHhcCCccceecC
Confidence            999999999999999999999995

One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.

>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=1.4e-10  Score=130.13  Aligned_cols=60  Identities=27%  Similarity=0.291  Sum_probs=53.5

Q ss_pred             CCCCCcccCCCCCccccchHHHhhhC-CCCceeecccccceeEeecCcccchhhhhhhhcc
Q 039493          689 VMGPWHLDASMDESFGSSLLEEFKSN-KTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAVL  748 (749)
Q Consensus       689 ~~gsw~~~~~~~~~~~s~lLeefr~n-k~k~~EL~DI~GhvvEFs~DQ~GSRFIQ~~~~~~  748 (749)
                      +...|++....+...++.+||+++++ +.+.+++.||.||+|||++||||||||||+++..
T Consensus       141 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~f~~Dq~GsrfiQqkl~~~  201 (503)
T KOG1488|consen  141 STNNSNSSDSSNSTGPSFLLDPFRSNSLSKTLELVDIPGHLVEFAKDQHGSRFIQQKLETA  201 (503)
T ss_pred             cccccCCcccCCCCCCCccccccccccccccccccccCCCceeecCCcccchHHHHhcccc
Confidence            55667777766777889999999999 8899999999999999999999999999999864

>smart00025 Pumilio Pumilio-like repeats

Probab=94.42  E-value=0.007  Score=43.37  Aligned_cols=25  Identities=16%  Similarity=0.226  Sum_probs=22.0

Q ss_pred             cccceeEeecCcccchhhhhhhhcc
Q 039493          724 IAGHVVEFRYAMLLAHLMLHFSAVL  748 (749)
Q Consensus       724 I~GhvvEFs~DQ~GSRFIQ~~~~~~  748 (749)
                      +.+|++|+|.|+||+|+||+.+...
T Consensus         2 ~~~~~~~l~~~~~g~~viqk~l~~~   26 (36)
T smart00025        2 IKGHLLELSKDQYGNRVVQKLLEHA   26 (36)
T ss_pred             chHHHHHHHhcchhhHHHHHHHHHC
Confidence            5789999999999999999987643

Pumilio-like repeats that bind RNA.

>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains

Probab=94.11  E-value=0.01  Score=43.91  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=22.4

Q ss_pred             ccccceeEeecCcccchhhhhhhhc
Q 039493          723 EIAGHVVEFRYAMLLAHLMLHFSAV  747 (749)
Q Consensus       723 DI~GhvvEFs~DQ~GSRFIQ~~~~~  747 (749)
                      .|.+|+++.|.|+||+|.||+.+.+
T Consensus         1 ~i~~~~~~l~~d~~Gn~VvQk~le~   25 (35)
T PF00806_consen    1 EIKGNLVELSKDQYGNYVVQKCLEH   25 (35)
T ss_dssp             CHTTTHHHHHTSTTHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhccccCHHHHHHHHH
Confidence            3789999999999999999998765

The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....

>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]

Probab=87.39  E-value=0.28  Score=59.30  Aligned_cols=29  Identities=7%  Similarity=0.063  Sum_probs=26.3

Q ss_pred             eeecccccceeEee-cCcccchhhhhhhhc
Q 039493          719 FELSEIAGHVVEFR-YAMLLAHLMLHFSAV  747 (749)
Q Consensus       719 ~EL~DI~GhvvEFs-~DQ~GSRFIQ~~~~~  747 (749)
                      .-..||+++..+|+ +||||+||||++|++
T Consensus       433 ~s~~~~l~~~~~~~~~Dq~g~r~LQk~Lds  462 (777)
T COG5099         433 VSATDILGPSIIVSCKDQHGSRFLQKLLDS  462 (777)
T ss_pred             ccccccccCccccccCCcHHHHHHHHHhcc
Confidence            45679999999999 999999999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	749
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 86/580 (14%), Positives = 156/580 (26%), Gaps = 203/580 (35%)

Query: 4   ELGRRPMIGNSEGSFGDDFE-KEIGMLLREQ-RRQETDDCERELNLYRSGSAPPTVEGSL 61
           +   + ++   E +F D+F+ K++  + +    ++E D       +  S      V G+L
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH------IIMS---KDAVSGTL 65

Query: 62  -----------SAVGGLFGAADN-NMAF-----SELSRAKAGNNNGFSSE-EELRSDPAY 103
                        V          N  F         R  +     +  + + L +D   
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 104 LSYYYSNVNLNPRLPPPLLSKEDWRFAQRLRGESSMLGELDDRRKV--NGGAGNSGSGGN 161
            + Y  NV    RL P            +LR     L EL   + V  +G  G   SG  
Sbjct: 126 FAKY--NV---SRLQP----------YLKLR---QALLELRPAKNVLIDGVLG---SG-- 162

Query: 162 RSLFSMPPGFDTRKQ-------QSESAQDKLRSSADWGGDGLIGLSGIGLGSKQK--SLA 212
                        K         S   Q K+     W          + L +     ++ 
Sbjct: 163 -------------KTWVALDVCLSYKVQCKMDFKIFW----------LNLKNCNSPETVL 199

Query: 213 EIFQDDLGRATPVTGNPSRPASRNAFDESIESISSAEAELANL--RHDLKSG----ANVQ 266
           E+ Q  L +  P   + S  +S          I S +AEL  L      ++      NVQ
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNI-----KLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 267 G----------------TSAVQTIGPPSSYTYAAVLGSSLSRSTTPDP--QLVARA---- 304
                            T   Q     S+ T   +     S + TPD    L+ +     
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 305 -----PSPC---PTAIGSGRVGASEKRGMTSSNSF-----SGVSSGINESADLVAALSGM 351
                       P  +    +  S + G+ + +++       +++ I  S   +  L   
Sbjct: 315 PQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESS---LNVLEPA 369

Query: 352 NLSTN----GVLNEDNQLPSQ--------------------------IEQDIENHQNYLH 381
                     V      +P+                           +E+  +     + 
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 382 GIQ---------GGQNHIK-QNKY--MKKSDSGNLQMPP---------G--LQSAKMS-- 416
            I              H    + Y   K  DS +L  P          G  L++ +    
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 417 -------YSDL----AKSNGGGLDLNNASLLTDRRVELQK 445
                  + D      K        N +  + +   +L+ 
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 5/29 (17%)

Query: 35 RQETDDCERELNLYRSGSAP-----PTVE 58
          +Q     +  L LY   SAP      T+E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	749
3gvo_A	351	Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom	82.7

>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X

Probab=82.70  E-value=0.17  Score=52.98  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=25.5

Q ss_pred             ceeecccccceeEeecCcccchhhhhhhhcc
Q 039493          718 CFELSEIAGHVVEFRYAMLLAHLMLHFSAVL  748 (749)
Q Consensus       718 ~~EL~DI~GhvvEFs~DQ~GSRFIQ~~~~~~  748 (749)
                      ..=+..|.|||+++|.|+||+|+||+.+..+
T Consensus        90 ~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~  120 (351)
T 3gvo_A           90 LALATRIRGHVLPLALQMYGCRVIQKALESI  120 (351)
T ss_dssp             HHHHHHHTTCHHHHHTSTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhHHHHhhCHHhHHHHHHHHHhC
Confidence            3345678999999999999999999977643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	749
d1m8za_	339	a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta	7e-06

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00