Citrus Sinensis ID: 039494

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNCQMRKRKETQPRWWETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAPPMYFHHGLGSFPMQFRS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHcccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccccHHHHcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHccccccccHHccc
Coil and Loop (DISEMBL)
mkkienedgrlitFSKRTSGIYRKVSELVTLTVSAIARLVfsqsgkpfsfgnpsIEAVANRFLGLNcqmrkrketqprwwetpvyefnhQELLQMDATIDNLSRTFIAKLNEktaaasssaappmyfhhglgsfpmqfrs
Flexible Loop (DISEMBL)
mkkienedgrlitfskrtsgiyrkvSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNCQMRkrketqprwwetPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAPPMYFHHGLGSFPMQFRS
Low Complexity Region (SEG)
MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNCQMRKRKETQPRWWETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTaaasssaaPPMYFHHGLGSFPMQFRS
Disordered region (IsUnstruct)
**********LITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNCQMRKRKETQPRWWETPVYEFNHQELLQMDATIDNLSRTFIAKL******************************
Disordered Region (DISOPRED)
MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLG**********************FNHQELLQMDATIDNLSRTFIA*************************FPMQFR*
Disordered Region (DISEMBL)
MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNCQMRKRKETQPRWWETPVYEFNHQELLQMDATIDNLSRTFIAKLNE********AAPPMYFHHGLGSFPMQFRS
Disordered Region (DISPRO)
MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNCQMR***ETQPRWWETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAPPMYFHHGLGSFP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNCQMRKRKETQPRWWETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAPPMYFHHGLGSFPMQFRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q4PSU4	264	Agamous-like MADS-box pro	yes	no	0.785	0.416	0.320	2e-15
Q9FKK2	299	Agamous-like MADS-box pro	no	no	0.471	0.220	0.469	7e-11
P29386	252	Agamous-like MADS-box pro	no	no	0.685	0.380	0.342	2e-09
Q39295	264	Agamous-like MADS-box pro	N/A	no	0.535	0.284	0.357	3e-08
Q39685	233	MADS-box protein CMB1 OS=	N/A	no	0.942	0.566	0.297	7e-08
O64645	214	MADS-box protein SOC1 OS=	no	no	0.592	0.387	0.336	8e-08
Q39371	256	Floral homeotic protein A	N/A	no	0.442	0.242	0.380	1e-07
Q38847	268	Agamous-like MADS-box pro	no	no	0.442	0.231	0.403	1e-07
Q9M2K8	256	Agamous-like MADS-box pro	no	no	0.442	0.242	0.387	2e-07
Q6H711	260	MADS-box transcription fa	no	no	0.714	0.384	0.279	3e-07

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 43/153 (28%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           M KI+ E  R +TFSKR +G+++K SEL TL  + I  +VFS + KPFSFG+PS+E+V +
Sbjct: 69  MVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLD 128

Query: 61  RFLGLN-----------------CQM----------------------RKRKETQPR--- 78
           R++  N                 C++                        RKE+  R   
Sbjct: 129 RYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRSMI 188

Query: 79  -WWETPVYEFNHQELLQMDATIDNLSRTFIAKL 110
            WWE PV E N  +L +M   ++ L +T +  +
Sbjct: 189 NWWEKPVEEMNMVQLQEMKYALEELRKTVVTNM 221

Probable transcription factor. Controls central cell differentiation during female gametophyte development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 47/66 (71%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          M K++NE    +TFSKR SG+++K SEL TL  + +A +VFS   K FSFG+P++++V +
Sbjct: 13 MVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVID 72

Query: 61 RFLGLN 66
          RF+  N
Sbjct: 73 RFINNN 78

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.

Arabidopsis thaliana (taxid: 3702)

>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 12/108 (11%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           MK+IEN+  R +TFSKR +G+ +K  EL  L  + +A ++FS  GK + FG+  IE+   
Sbjct: 8   MKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIE 67

Query: 61  RF-LGLNCQMRKRK--ETQPRWWETPVYEFNHQELLQMDATIDNLSRT 105
           R+    NC +   K  ET   W          QE+ ++ +  ++L RT
Sbjct: 68  RYNRCYNCSLSNNKPEETTQSWC---------QEVTKLKSKYESLVRT 106

Probable transcription factor. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 9/84 (10%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          +K+IEN + R +TFSKR +G+ +K  EL  L  + +A +VFS+SGK F F + S++    
Sbjct: 8  IKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLL 67

Query: 61 RFL---------GLNCQMRKRKET 75
          R+          G+NC+   ++E 
Sbjct: 68 RYGNYQISSDVPGINCKTENQEEC 91

Probable transcription factor.

Brassica napus (taxid: 3708)

>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPS-IEAVA 59
           +K+IEN+  R +TF+KR +G+ +K  EL  L  + +A +VFS  GK + F + S +    
Sbjct: 8   LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTL 67

Query: 60  NRFLGLNCQMRKRKETQPRWWETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASS 119
            R+    C     + +QP    +   E ++QE L++ A +D L R+    L E     S+
Sbjct: 68  ERY--QRCSYGSLETSQP----SKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELST 121

Query: 120 SAAPPMYFHHGLGSFPMQFRS 140
                +   H L     Q RS
Sbjct: 122 KELEQL--EHQLDKSLRQIRS 140

Dianthus caryophyllus (taxid: 3570)

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          MK+IEN   R +TFSKR +G+ +K  EL  L  + ++ ++FS  GK + F + +++   +
Sbjct: 8  MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTID 67

Query: 61 RFLGLNCQMRKRKETQPRWWETPVYEFNHQEL 92
          R+L         + T+ R    PV E N Q L
Sbjct: 68 RYL---------RHTKDRVSTKPVSEENMQHL 90

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39371|3AP1_BRAOL Floral homeotic protein APETALA 1 OS=Brassica oleracea GN=AP1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFG-NPSIEAVA 59
          +K+IEN+  R +TFSKR +G+++K  E+  L  + +A +VFS  GK F +  +P +E + 
Sbjct: 8  LKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDPCMEKIL 67

Query: 60 NRF 62
           R+
Sbjct: 68 ERY 70

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea (taxid: 3712)

>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          +K+IEN + R +TFSKR SG+ +K  EL  L  + +A +VFS+SGK F + +  ++   +
Sbjct: 8  IKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLS 67

Query: 61 RF 62
          R+
Sbjct: 68 RY 69

Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          +KKIEN + R +TFSKR +G+ +K  EL  L  + +A ++FS +GK + F +  +E + +
Sbjct: 8  IKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSVCMEQILS 67

Query: 61 RF 62
          R+
Sbjct: 68 RY 69

Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 29/129 (22%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           +K+IEN   R +TFSKR  G+ +K +EL  L  + +  ++FS +GK F + +P+      
Sbjct: 8   IKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPT------ 61

Query: 61  RFLGLNCQMRKRKETQPRWWETPVYEFNHQ------------ELLQMDATI-----DNLS 103
                 C +R+  E       T   E NH             E+ ++D  I     D+LS
Sbjct: 62  ------CSLRELIEHYQTVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLS 115

Query: 104 RTFIAKLNE 112
              +A +N+
Sbjct: 116 NLTLADIND 124

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
255557369	220	mads box protein, putative [Ricinus comm	0.935	0.595	0.394	4e-24
255557367	239	mads box protein, putative [Ricinus comm	0.814	0.476	0.431	2e-23
224054544	202	predicted protein [Populus trichocarpa]	0.914	0.633	0.378	5e-23
224104275	201	predicted protein [Populus trichocarpa]	0.892	0.621	0.391	3e-22
224077620	194	predicted protein [Populus trichocarpa]	0.864	0.623	0.393	9e-22
449434264	260	PREDICTED: agamous-like MADS-box protein	0.807	0.434	0.357	7e-17
225462217	199	PREDICTED: agamous-like MADS-box protein	0.878	0.618	0.371	1e-16
449505973	269	PREDICTED: agamous-like MADS-box protein	0.45	0.234	0.650	2e-15
225462215	317	PREDICTED: agamous-like MADS-box protein	0.878	0.388	0.341	6e-15
147810166	395	hypothetical protein VITISV_037437 [Viti	0.878	0.311	0.341	6e-15

>gi|255557369|ref|XP_002519715.1| mads box protein, putative [Ricinus communis] gi|223541132|gb|EEF42688.1| mads box protein, putative [Ricinus communis]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 92/175 (52%), Gaps = 44/175 (25%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           MK+IENE+ RLITFSKR SGIY+K SEL+TL  + +  LVFS +GKPFSFG+PS+E++AN
Sbjct: 15  MKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSFGHPSLESIAN 74

Query: 61  RFLGLNC--------------------------QMRKRKETQPR---------------- 78
           RFLG N                           ++  R E++                  
Sbjct: 75  RFLGKNVPPSDNTHPLVEAHRKMRINELNKQYNELLNRLESEKERGSMLKKTIRGKGCNN 134

Query: 79  WWETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASS--SAAPPMYFHHGL 131
           WWE P+ + N QEL Q+ A  + L  T   K+NEK     S  S++ P   +HGL
Sbjct: 135 WWEAPIDDLNMQELEQIYAMFEELHSTLCKKMNEKRNNGVSIWSSSIPQMNNHGL 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557367|ref|XP_002519714.1| mads box protein, putative [Ricinus communis] gi|223541131|gb|EEF42687.1| mads box protein, putative [Ricinus communis]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 85/160 (53%), Gaps = 46/160 (28%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           MKKIENED RLITFSKR SGIY+K SELVTLT + +A LV+S +GKPFSF +PS++A+ N
Sbjct: 18  MKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFAHPSMDAITN 77

Query: 61  RFLG--------------------------LNCQM------------------RKRKETQ 76
           RF G                          LN Q                   +K K+  
Sbjct: 78  RFFGQGSADRNNNPTTHPLIEAHRLMRIEELNQQHNELLRQLEIEKEKGKQLKQKHKKNN 137

Query: 77  PR--WWETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKT 114
            R  WW+TP+ E N  ELLQM+A    +  + I KL EKT
Sbjct: 138 ERKGWWDTPIEELNVPELLQMEAACKEIRTSLINKLKEKT 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054544|ref|XP_002298313.1| predicted protein [Populus trichocarpa] gi|222845571|gb|EEE83118.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 86/169 (50%), Gaps = 41/169 (24%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           MK+IEN+D RLITFSKR SGIY+K SEL TLT + IA  VFS +GKPFSFG+PS+E+V N
Sbjct: 14  MKRIENQDDRLITFSKRRSGIYKKASELATLTGAEIAIAVFSPAGKPFSFGHPSVESVIN 73

Query: 61  RFL-----------------------------------------GLNCQMRKRKETQPRW 79
           RFL                                         GL  + + ++     W
Sbjct: 74  RFLEDPLDMDSTYHLVEAHRRMRIEELTQKHNDMQHQLDEEKEKGLKLKSKIKEMDSKGW 133

Query: 80  WETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAPPMYFH 128
           W+T V E N QEL++++     L  T  +K+ E  +  +SS+  P   H
Sbjct: 134 WDTAVDELNIQELIELEKKFKELQMTLCSKIAENASTVASSSQAPEIGH 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104275|ref|XP_002313380.1| predicted protein [Populus trichocarpa] gi|222849788|gb|EEE87335.1| predicted protein [Populus trichocarpa]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 86/166 (51%), Gaps = 41/166 (24%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           MK+I NED RL+TFSKR SGIY+K+SEL+TLT +  A LVFS  GKPFSFG+PSIE V +
Sbjct: 14  MKRIVNEDDRLVTFSKRRSGIYKKLSELITLTGTEAAFLVFSPGGKPFSFGHPSIENVLD 73

Query: 61  RFL-----------------------------GLNCQMRKRKETQPR------------W 79
           RFL                              +  Q+   KE   +            W
Sbjct: 74  RFLENPSNADGTHELVEEYRRARIEELTQKYDEMQQQLDDDKEKGSKLKDKIQGNERGDW 133

Query: 80  WETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAPPM 125
           W  PV E N QEL++++   + L  T  +K+ + +  ASSS AP +
Sbjct: 134 WNAPVEELNLQELIELEKKFEGLRMTLHSKMKDSSNGASSSHAPEV 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077620|ref|XP_002305331.1| predicted protein [Populus trichocarpa] gi|222848295|gb|EEE85842.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 86/165 (52%), Gaps = 44/165 (26%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           +K+IENED RLITFSKR SGIY+K SELVTL  + +A LVFS +GK FSFG+PSIE+VAN
Sbjct: 14  IKRIENEDDRLITFSKRRSGIYKKASELVTLCGAEVAVLVFSPAGKAFSFGHPSIESVAN 73

Query: 61  RFLGLNC------------------------------QMRKRKE------------TQPR 78
           RFLG N                               +M   ++            +   
Sbjct: 74  RFLGQNIAPNDNTHPLVEAHRKVRINELNQQHNELLSEMEAERDRGKVLKEGTSEKSSQG 133

Query: 79  WWETPVYEFNHQELLQMDATIDNLSRTFIAKLNE--KTAAASSSA 121
           WWE P+ E + QEL QM+  ++   +     +NE  +   ASSS+
Sbjct: 134 WWEAPIDELSLQELKQMNVMLEEFHKNLHKTINELRRNGGASSSS 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434264|ref|XP_004134916.1| PREDICTED: agamous-like MADS-box protein AGL61-like [Cucumis sativus]

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 41/154 (26%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           MKKI NED RLITFSKR SGIY+K SEL TL  + +  +VFS +GKPFSF +P IE +AN
Sbjct: 25  MKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPCIETIAN 84

Query: 61  RFLG---------------------LNCQ--------------------MRKRKETQPRW 79
           +FL                      LN Q                    +++ +     W
Sbjct: 85  KFLNAAATTTTTPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGW 144

Query: 80  WETPVYEFNHQELLQMDATIDNLSRTFIAKLNEK 113
           WETP  E   +EL ++DA+   +      +L ++
Sbjct: 145 WETPTEELGIEELQEVDASFGEIYSNVCHQLKQR 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462217|ref|XP_002269756.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 77/164 (46%), Gaps = 41/164 (25%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           MK+I NE+ RLITFSKR SGIY+K SEL TL  + +  LVFS +GK FSFG PSIE + N
Sbjct: 14  MKRIPNEEDRLITFSKRRSGIYKKASELSTLCGAEVGVLVFSPAGKAFSFGQPSIEKITN 73

Query: 61  RFLGLN--------------------------------CQMRKRKETQPR---------W 79
           + L  N                                 ++ K +E   R         W
Sbjct: 74  KVLYENPPPNDNTLNLVEAHRRFRLNELHQKYSELLSKMEVAKEQEKILRKKVPNRSKGW 133

Query: 80  WETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAP 123
           WE P+ E +  EL QM   I  L +    + NE    ASSS+ P
Sbjct: 134 WEEPISELSMHELEQMAIKIQMLHKHVQHRANELWTRASSSSLP 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505973|ref|XP_004162618.1| PREDICTED: agamous-like MADS-box protein AGL61-like [Cucumis sativus]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 49/63 (77%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          MKKI NED RLITFSKR SGIY+K SEL TL  + +  +VFS +GKPFSF +P IE +AN
Sbjct: 25 MKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPCIETIAN 84

Query: 61 RFL 63
          +FL
Sbjct: 85 KFL 87

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462215|ref|XP_002269626.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 76/164 (46%), Gaps = 41/164 (25%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           M+K+ NE+ RL++FSKR SGIYRK SEL TL  + +  L FS +GKPFSFG+P I+++ N
Sbjct: 14  MRKMNNEEDRLVSFSKRRSGIYRKASELSTLCGAEVGILAFSPNGKPFSFGHPCIKSITN 73

Query: 61  RFLGLN---C-------------------QMRKRKETQPR-------------------W 79
           + L  N   C                   Q  K   TQ +                   W
Sbjct: 74  KLLSENHTPCDGTQNLLEPYRRVRLNELHQNYKEACTQMKAAKEQEKKIKKKSLDRSKGW 133

Query: 80  WETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAP 123
           WE PV E +   L +    I  L +    ++ E    ASSS +P
Sbjct: 134 WEEPVIELDMDGLKRRADLIQKLHKHVQLQIKELQTMASSSTSP 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810166|emb|CAN66899.1| hypothetical protein VITISV_037437 [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 76/164 (46%), Gaps = 41/164 (25%)

Query: 1   MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           M+K+ NE+ RL++FSKR SGIYRK SEL TL  + +  L FS +GKPFSFG+P I+++ N
Sbjct: 14  MRKMNNEEDRLVSFSKRRSGIYRKASELSTLCGAEVGILAFSPNGKPFSFGHPCIKSITN 73

Query: 61  RFLGLN---C-------------------QMRKRKETQPR-------------------W 79
           + L  N   C                   Q  K   TQ +                   W
Sbjct: 74  KLLSENHTPCDGTQNLLEPYRRVRLNELHQNYKEACTQMKAAKEQEKKIKKKSLDRSKGW 133

Query: 80  WETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAP 123
           WE PV E +   L +    I  L +    ++ E    ASSS +P
Sbjct: 134 WEEPVIELDMDGLKRRADLIQKLHKHVQLQIKELQTMASSSTSP 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.471	0.25	0.5	4.1e-19
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.471	0.266	0.5	1.1e-15
TAIR|locus:2032537	182	AGL59 "AGAMOUS-like 59" [Arabi	0.45	0.346	0.555	1e-13
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.442	0.251	0.483	2.4e-13
TAIR|locus:4010713489	185	AGL64 "AGAMOUS-like 64" [Arabi	0.45	0.340	0.555	2.7e-13
TAIR|locus:2103415	178	AGL91 "AGAMOUS-like 91" [Arabi	0.442	0.348	0.419	5.3e-13
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.442	0.274	0.435	6.8e-13
TAIR|locus:2102990	207	AGL57 "AGAMOUS-like 57" [Arabi	0.55	0.371	0.448	1.2e-12
TAIR|locus:2040819	172	AGL29 "AGAMOUS-like 29" [Arabi	0.45	0.366	0.444	1e-11
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.8	0.374	0.341	1.5e-11

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
 Identities = 33/66 (50%), Positives = 48/66 (72%)

Query:     1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
             M KI+ E  R +TFSKR +G+++K SEL TL  + I  +VFS + KPFSFG+PS+E+V +
Sbjct:    69 MVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLD 128

Query:    61 RFLGLN 66
             R++  N
Sbjct:   129 RYVSRN 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 33/66 (50%), Positives = 46/66 (69%)

Query:     1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
             MKK+ENE    +TFSKR  G+++K SEL TL+ + I  +VFS  GK FSFG+PS++ + +
Sbjct:    13 MKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPSVQELIH 72

Query:    61 RFLGLN 66
             RF   N
Sbjct:    73 RFSNPN 78

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2032537 AGL59 "AGAMOUS-like 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 35/63 (55%), Positives = 48/63 (76%)

Query:     1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
             +KKIE ++GR +TFSKR +GIY K+SEL  L    +A + +S SGKP++FG+PS +AVA 
Sbjct:    14 IKKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPYTFGSPSFQAVAE 73

Query:    61 RFL 63
             RFL
Sbjct:    74 RFL 76

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query:     3 KIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRF 62
             K+ NE    +TFSKR SG+++K SEL TL  + IA +VFS SGK +SFG+P++  + +  
Sbjct:    15 KMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHS 74

Query:    63 LG 64
             LG
Sbjct:    75 LG 76

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:4010713489 AGL64 "AGAMOUS-like 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 35/63 (55%), Positives = 48/63 (76%)

Query:     1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
             +KKIE ++ RL+T SKR +GIY K+SEL  L  + +A L +S SGKP++FG+PS +AVA 
Sbjct:    14 IKKIEKDEDRLVTLSKRRNGIYTKLSELSILCGAEVAFLGYSCSGKPYTFGSPSFQAVAE 73

Query:    61 RFL 63
             RFL
Sbjct:    74 RFL 76

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2103415 AGL91 "AGAMOUS-like 91" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
 Identities = 26/62 (41%), Positives = 43/62 (69%)

Query:     1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
             M+K+++ + + +TFSKR  G+++K SEL TL  + +  +VFS   KP+SFG P+ + +A 
Sbjct:     8 MEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKPNFDVIAE 67

Query:    61 RF 62
             RF
Sbjct:    68 RF 69

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 27/62 (43%), Positives = 42/62 (67%)

Query:     3 KIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRF 62
             K+  E    +TFSKR +G+++K SE  TL  + IA +VFS +GK FSFG+P+++ + + F
Sbjct:    15 KMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHF 74

Query:    63 LG 64
              G
Sbjct:    75 RG 76

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2102990 AGL57 "AGAMOUS-like 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/78 (44%), Positives = 55/78 (70%)

Query:     1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
             MKK+EN   R+ITFSKR +GI++K++ELV +    +A L+FSQ  KP++F +PS++ VA+
Sbjct:    20 MKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTFAHPSMKKVAD 79

Query:    61 RFLGLNCQMR-KRKETQP 77
             R    + Q   +R +T+P
Sbjct:    80 RLKNPSRQEPLERDDTRP 97

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2040819 AGL29 "AGAMOUS-like 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 28/63 (44%), Positives = 47/63 (74%)

Query:     1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
             M+ +++ + R +TFSKR +G+++K SEL TL  + +  +VFS  GKPFS+G P++++VA 
Sbjct:     8 MEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNLDSVAE 67

Query:    61 RFL 63
             RF+
Sbjct:    68 RFM 70

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 41/120 (34%), Positives = 70/120 (58%)

Query:     1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
             M K++NE    +TFSKR SG+++K SEL TL  + +A +VFS   K FSFG+P++++V +
Sbjct:    13 MVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVID 72

Query:    61 RFLGLNCQMRKRKETQPRWWETP----VYEFNHQELLQMDATIDNLSRTF--IAKLNEKT 114
             RF+  N  +   +    +  ET     V + N+  L Q+ + ++   + +  + K+ EKT
Sbjct:    73 RFINNN-PLPPHQHNNMQLRETRRNSIVQDLNNH-LTQVLSQLETEKKKYDELKKIREKT 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	8e-18
smart00432	59	smart00432, MADS, MADS domain	4e-14
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	7e-14
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	7e-14
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	3e-07
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	7e-06

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 72.2 bits (178), Expect = 8e-18
 Identities = 26/66 (39%), Positives = 42/66 (63%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          +K+IEN   R +TFSKR +G+ +K  EL  L  + +A ++FS SGK + F +PS+E +  
Sbjct: 7  IKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIE 66

Query: 61 RFLGLN 66
          R+   +
Sbjct: 67 RYQKTS 72

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 62.2 bits (152), Expect = 4e-14
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNP 53
          +K+IEN+  R +TFSKR +G+++K  EL  L  + +A +VFS +GK + F +P
Sbjct: 7  IKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 62.3 bits (152), Expect = 7e-14
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGN-PSIEAVA 59
          +K+IEN+  R +TFSKR  G+++K SEL TL  + +A +V+S SGK + F     +E V 
Sbjct: 7  IKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVI 66

Query: 60 NRFLGLN 66
          +RF  L+
Sbjct: 67 SRFEVLS 73

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 61.4 bits (150), Expect = 7e-14
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNP 53
          +K+IEN+  R +TFSKR +G+++K SEL  L  + +A +VFS SGK + F + 
Sbjct: 7  IKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 2  KKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSF 50
          K+IEN+  R +TFSKR +GI++K  EL  L  + +A ++FS +GK + +
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEY 49

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 43.9 bits (103), Expect = 7e-06
 Identities = 23/57 (40%), Positives = 33/57 (57%)

Query: 4   IENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
           I N+  R +TFSKR  GI +K  EL  LT + +  LV S++G   +F  P +E+V  
Sbjct: 91  ITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.96
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.95
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.95
smart00432	59	MADS MADS domain.	99.94
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.93
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.72
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.27
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	97.65

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=5.5e-31  Score=171.40  Aligned_cols=67  Identities=39%  Similarity=0.675  Sum_probs=64.5

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhccch
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNC   67 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~~~~   67 (140)
                      |++|+|+.+|++||+||++||||||.|||+||||+||+|||||+|++|+|++|++++|++||...+.
T Consensus         7 i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~   73 (77)
T cd00265           7 IKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG   73 (77)
T ss_pred             eEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence            6899999999999999999999999999999999999999999999999999999999999987653

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.95  E-value=1.2e-29  Score=189.72  Aligned_cols=68  Identities=49%  Similarity=0.799  Sum_probs=64.7

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCch--hHHHHHHhhccchH
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPS--IEAVANRFLGLNCQ   68 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~sps--v~~vi~ry~~~~~~   68 (140)
                      |++|+|+..|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+  |++|+++|......
T Consensus         8 i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~   77 (195)
T KOG0014|consen    8 IKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEP   77 (195)
T ss_pred             eeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhh
Confidence            789999999999999999999999999999999999999999999999999987  99999999886554

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.95  E-value=1.3e-28  Score=162.34  Aligned_cols=68  Identities=44%  Similarity=0.663  Sum_probs=64.0

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCch-hHHHHHHhhccchH
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPS-IEAVANRFLGLNCQ   68 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~sps-v~~vi~ry~~~~~~   68 (140)
                      |++|+|+.+|++||+|||.||+|||+||||||||+||+|||||+|+.+.|++++ ++.++++|...+..
T Consensus         7 i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (83)
T cd00266           7 IKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL   75 (83)
T ss_pred             eEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence            689999999999999999999999999999999999999999999999988766 99999999887754

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.94  E-value=1.3e-27  Score=147.72  Aligned_cols=53  Identities=43%  Similarity=0.788  Sum_probs=51.5

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCc
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNP   53 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~sp   53 (140)
                      |++|+|+..|++||+||+.||+|||+|||+||||+||+|||||+|++++|++|
T Consensus         7 i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        7 IKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             eEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            68999999999999999999999999999999999999999999999999886

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=1.3e-28  Score=147.78  Aligned_cols=51  Identities=47%  Similarity=0.742  Sum_probs=46.7

Q ss_pred             ccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCC
Q 039494            2 KKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGN   52 (140)
Q Consensus         2 k~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~s   52 (140)
                      |+|+|+..|++||+||+.||+|||.|||+||||+||+|||||+|++++|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999975

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.93  E-value=3.3e-27  Score=146.04  Aligned_cols=53  Identities=45%  Similarity=0.735  Sum_probs=51.2

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCc
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNP   53 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~sp   53 (140)
                      |++|+|+..|++||+||++||+|||+|||+||||+||+|||||+|+++.|++|
T Consensus         7 i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           7 IKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             eEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            68999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.72  E-value=1.3e-18  Score=136.29  Aligned_cols=60  Identities=42%  Similarity=0.634  Sum_probs=55.9

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHH
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN   60 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~   60 (140)
                      |++|+|+..|.+||+|||.||||||+|||||+|.+|-++|.|.+|.+|+|++|..+.||.
T Consensus        69 ~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~  128 (338)
T KOG0015|consen   69 MEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT  128 (338)
T ss_pred             chhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence            689999999999999999999999999999999999999999999999999988654443

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.27  E-value=1.5e-12  Score=106.10  Aligned_cols=60  Identities=38%  Similarity=0.557  Sum_probs=56.3

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHH
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN   60 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~   60 (140)
                      |..|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|.++.|+.|+.+.|+.
T Consensus        88 is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~  147 (412)
T COG5068          88 ISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK  147 (412)
T ss_pred             cccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence            678999999999999999999999999999999999999999999999999998666654

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=97.65  E-value=0.00017  Score=48.76  Aligned_cols=48  Identities=6%  Similarity=0.099  Sum_probs=43.1

Q ss_pred             HHHHhCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 039494           71 KRKETQPRWWETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAAS  118 (140)
Q Consensus        71 K~~~~~~~~~~~~l~~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~~~~  118 (140)
                      .++...+.+.|+++++|+++||..|+..|+..+..|++|+.++..++.
T Consensus        30 ~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i   77 (100)
T PF01486_consen   30 SLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQI   77 (100)
T ss_pred             HHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            366778889999999999999999999999999999999999877654

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-06
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		1e-04
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		1e-04
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		1e-04
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-04
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		2e-04
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-04

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          +K IEN+  R +TFSKR  GI +K  EL  LT + +  LV S++G  ++F  P  E +  
Sbjct: 23 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVT 82
Query: 61 RFLGLN 66
          +  G N
Sbjct: 83 QQEGRN 88

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGN----PSIE 56
          M+ I+N+  R  TFSKR +GI +K  EL TLT + +  LV S++G  ++F      P I 
Sbjct: 16 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMIT 75
Query: 57 AVANRFLGLNC 67
          +   + L   C
Sbjct: 76 SETGKALIQTC 86

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGN----PSIE 56
          M+ I+N+  R  TFSKR +GI +K  EL TLT + +  LV S++G  ++F      P I 
Sbjct: 17 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMIT 76
Query: 57 AVANRFLGLNC 67
          +   + L   C
Sbjct: 77 SETGKALIQTC 87

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 3  KIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRF 62
          +I +E  R +TF+KR  G+ +K  EL  L    IA ++F+ S K F + +  ++ V  ++
Sbjct: 9  RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68
Query: 63 LGLN 66
             N
Sbjct: 69 TEYN 72

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 3  KIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRF 62
          +I +E  R +TF+KR  G+ +K  EL  L  + IA ++F+ S K F + +  ++ V  ++
Sbjct: 9  RIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDMDKVLLKY 68
Query: 63 LGLN 66
             N
Sbjct: 69 TEYN 72

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 3  KIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRF 62
          +I +E  R +TF+KR  G+ +K  EL  L    IA ++F+ S K F + +  ++ V  ++
Sbjct: 9  RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68
Query: 63 LGLN 66
             N
Sbjct: 69 TEYN 72

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 3  KIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRF 62
          +I +E  R +TF+KR  G+ +K  EL  L    IA ++F+ S K F + +  ++ V  ++
Sbjct: 9  RIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-19
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	6e-19
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	9e-19
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-13
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	2e-13

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 76.0 bits (187), Expect = 2e-19
 Identities = 23/66 (34%), Positives = 37/66 (56%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          M+ I+N+  R  TFSKR +GI +K  EL TLT + +  LV S++G  ++F    ++ +  
Sbjct: 17 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMIT 76

Query: 61 RFLGLN 66
             G  
Sbjct: 77 SETGKA 82

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 75.3 bits (185), Expect = 6e-19
 Identities = 23/66 (34%), Positives = 37/66 (56%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          M+ I+N+  R  TFSKR +GI +K  EL TLT + +  LV S++G  ++F    ++ +  
Sbjct: 16 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMIT 75

Query: 61 RFLGLN 66
             G  
Sbjct: 76 SETGKA 81

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 74.9 bits (184), Expect = 9e-19
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          +K IEN+  R +TFSKR  GI +K  EL  LT + +  LV S++G  ++F  P  E +  
Sbjct: 23 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVT 82

Query: 61 RFLGLN 66
          +  G N
Sbjct: 83 QQEGRN 88

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 60.9 bits (148), Expect = 1e-13
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          + +I +E  R +TF+KR  G+ +K  EL  L    IA ++F+ S K F + +  ++ V  
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66

Query: 61 RF 62
          ++
Sbjct: 67 KY 68

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 60.9 bits (148), Expect = 2e-13
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          + +I +E  R +TF+KR  G+ +K  EL  L    IA ++F+ S K F + +  ++ V  
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66

Query: 61 RF 62
          ++
Sbjct: 67 KY 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
1egw_A	77	MADS box transcription enhancer factor 2, polypept	99.98
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	99.97
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.96
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.96
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.96

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=99.98  E-value=1.3e-34  Score=186.93  Aligned_cols=67  Identities=30%  Similarity=0.512  Sum_probs=63.6

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhccch
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNC   67 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~~~~   67 (140)
                      |++|+|+.+|+|||+|||.||||||.||||||||+||+|||||+|++|+|++|+++.|++||...++
T Consensus         7 ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~   73 (77)
T 1egw_A            7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE   73 (77)
T ss_dssp             SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred             eEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence            7899999999999999999999999999999999999999999999999999999999999987654

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=99.97  E-value=4.4e-34  Score=188.89  Aligned_cols=67  Identities=30%  Similarity=0.512  Sum_probs=64.4

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhccch
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNC   67 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~~~~   67 (140)
                      |++|+|+.+|+|||+|||.||||||.||||||||+||+|||||+|++|+|++|+|+.||+||...++
T Consensus         7 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~   73 (90)
T 3p57_A            7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE   73 (90)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCS
T ss_pred             eEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCc
Confidence            7899999999999999999999999999999999999999999999999999999999999987553

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.96  E-value=5.4e-32  Score=181.80  Aligned_cols=65  Identities=38%  Similarity=0.568  Sum_probs=62.7

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhcc
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGL   65 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~~   65 (140)
                      |++|+|+.+|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+++.|+++|...
T Consensus        23 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~   87 (100)
T 1mnm_A           23 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   87 (100)
T ss_dssp             SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             eEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence            78999999999999999999999999999999999999999999999999999999999999653

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.96  E-value=8.5e-32  Score=178.62  Aligned_cols=64  Identities=36%  Similarity=0.516  Sum_probs=61.6

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhc
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLG   64 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~   64 (140)
                      |++|+|+.+|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+++.+|++|..
T Consensus        17 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A           17 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             EEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            6899999999999999999999999999999999999999999999999999999999997754

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.96  E-value=3.7e-31  Score=178.73  Aligned_cols=64  Identities=36%  Similarity=0.516  Sum_probs=61.2

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhc
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLG   64 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~   64 (140)
                      |++|+|+.+|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+++.+|+++..
T Consensus        16 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~G   79 (103)
T 1k6o_B           16 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   79 (103)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHHH
T ss_pred             EEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhhh
Confidence            6899999999999999999999999999999999999999999999999999999999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-19
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-18
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-18

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (185), Expect = 2e-19
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          +K IEN+  R +TFSKR  GI +K  EL  LT + +  LV S++G  ++F  P  E +  
Sbjct: 9  IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVT 68

Query: 61 RFLGLN 66
          +  G N
Sbjct: 69 QQEGRN 74

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 1e-18
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          M+ I+N+  R  TFSKR +GI +K  EL TLT + +  LV S++G  ++F    ++ +  
Sbjct: 9  MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMIT 68

Query: 61 RFLG 64
             G
Sbjct: 69 SETG 72

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (177), Expect = 2e-18
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 1  MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVAN 60
          + +I +E  R +TF+KR  G+ +K  EL  L    IA ++F+ S K F + +  ++ V  
Sbjct: 7  ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLL 66

Query: 61 RF 62
          ++
Sbjct: 67 KY 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	99.98
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.97
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.97

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.3e-35  Score=184.73  Aligned_cols=64  Identities=30%  Similarity=0.531  Sum_probs=62.5

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhc
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLG   64 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~   64 (140)
                      |++|+|+..|+|||+|||.||||||.|||+||||+||+|||||+|++|+|++|++++|++||..
T Consensus         7 ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             EEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            7899999999999999999999999999999999999999999999999999999999999964

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.6e-33  Score=181.99  Aligned_cols=66  Identities=39%  Similarity=0.579  Sum_probs=63.6

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhccc
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLN   66 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~~~   66 (140)
                      |++|+|+..|+|||+|||.||||||.|||+||||+||||||||+|++|+|++|+|+.|+++|....
T Consensus         9 i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~   74 (85)
T d1mnma_           9 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN   74 (85)
T ss_dssp             SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred             EEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhccc
Confidence            789999999999999999999999999999999999999999999999999999999999997643

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.5e-33  Score=179.93  Aligned_cols=64  Identities=36%  Similarity=0.516  Sum_probs=62.4

Q ss_pred             CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhc
Q 039494            1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLG   64 (140)
Q Consensus         1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~   64 (140)
                      |++|+|+..|+|||+|||.||||||+|||+||||+||+|||||+|++|+|++|++++|+++|..
T Consensus         9 i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           9 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             EEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999965