Citrus Sinensis ID: 039513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690
Protein Sequence
MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAECPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGKGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLEELSNSGLLQPLPLEVNPHMALNHQLFPRLP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEccccccccccccccccccHHHHHcccccccccccHHHHHHHcccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccEEEEEEccccccEEEEEccHHHHHHHHHcccccEEEEEcccccccccccEEEEEEEcccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccEEccccHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccEEEcccccEEEEEEEEccccEEEEEEcccccEEEEEccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccHccEEEEEEccccccccEEEEEEcccHHHHEcccccccccccEEEEEcccccccccccccccccEEEEEEEEEcccccccccccccccccccEcccccccccccccccccccEEEEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccEEEEEcccccccEEEEEEcHHHHHHHHHHccccEEEEEcccccccccEEEEEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHcccccccHHccHHHcccccHHHHcccccccEEEEccccEEEEEEEcccccEEEEEEccccccccccccHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccccc
Coil and Loop (DISEMBL)
mprmedilnlpvqdppcvefsaANLKWVKveggrqggddialipfARVEEfvkgessnaecpasfriesrrkrsegsiskprvdgylEYTLYWcsygpedyrdsesgngdgsnvkpatgkgsrpgrrhmmrgclchftvkrlytrPLLALIIYNQrkhvdktgapchgildrdavgtramyapriSEDLRQKVMSMLYVGISLDNIIQHHIEAvqghggphnrddfltrndvrNMERVIRnsshelhvddecsvkMWVQRHHKHvfffqdysvsepfILVIQTDWQLQQMLhygnnglmsfhstfgskklkyplstllvfdsshnaipVAWIITSSFVGQFVHKWIGLLAERirtkdprwrlsaflvdnpsfdisTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYssrsspnsvdTIEEFMQVFVDQCAfmdyfksqwlphIELWVTGirslpvttpeplAAIETYHLRLKSKLFheqnvnfwPRVDWLIHTLTTEFHslywldqysmetgyfenlrddsfstnawsqalhipdvnvmlDEQNLQLAKIISQADRTLaytiwnpgsefslcdcpwsrlgnVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLlqnppddplVLEYAIVHATRLQQDIKGLEElsnsgllqplplevnphmalnhqlfprlp
Flexible Loop (DISEMBL)
mprmedilnlpvqdppCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEfvkgessnaecpasfriesrrkrsegsiskprvdgylEYTLYWCSYGPEDYRDsesgngdgsnvkpatgkgsrpgrrhmMRGCLCHFTVKRLYTRPLLALIIYNQRkhvdktgapchgildrdavgtRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAvqghggphnrDDFLTRNDVRNMERVirnsshelhvddECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLEELSNSGLLQPLPLEVNPHMALNHQLFPRLP
Low Complexity Region (SEG)
MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAECPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGKGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLEELSNSGLLQPLPLEVNPHMALNHQLFPRLP
Disordered region (IsUnstruct)
********NLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFV******************************VDGYLEYTLYWCSYG*******************************MMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGP***DDFLTRNDVRNMERVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSR***NSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLEEL****LL**********************
Disordered Region (DISOPRED)
****EDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAECPASFRIE*****************YLEYTLYWCSYGPEDYRDSE****************************LCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSME*********DSFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDI***************************QL*P***
Disordered Region (DISEMBL)
MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFV*********PASFRI***********SKPRVDGYLEYTLYWCSYGPEDYR***********************RRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLEELSNSGLLQPLPLEVNPHMALNHQLFPRLP
Disordered Region (DISPRO)
*PRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAECPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRD**************************MRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLEELSNSGLLQPLPLEVNPHMALNHQLFP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAECPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGKGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLEELSNSGLLQPLPLEVNPHMALNHQLFPRLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	690
255551106	686	conserved hypothetical protein [Ricinus	0.991	0.997	0.807	0.0
359476078	697	PREDICTED: uncharacterized protein LOC10	0.998	0.988	0.804	0.0
356507794	690	PREDICTED: uncharacterized protein LOC10	0.998	0.998	0.770	0.0
449437368	678	PREDICTED: uncharacterized protein LOC10	0.971	0.988	0.661	0.0
357466407	552	hypothetical protein MTR_3g108220 [Medic	0.762	0.952	0.675	0.0
225431451	720	PREDICTED: uncharacterized protein LOC10	0.965	0.925	0.464	0.0
242037417	728	hypothetical protein SORBIDRAFT_01g00131	0.950	0.901	0.467	0.0
296085354	962	unnamed protein product [Vitis vinifera]	0.949	0.680	0.477	0.0
225449780	965	PREDICTED: uncharacterized protein LOC10	0.940	0.672	0.480	0.0
255574517	681	conserved hypothetical protein [Ricinus	0.949	0.961	0.465	0.0

>gi|255551106|ref|XP_002516601.1| conserved hypothetical protein [Ricinus communis] gi|223544421|gb|EEF45942.1| conserved hypothetical protein [Ricinus communis]

 Score = 1187 bits (3070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/685 (80%), Positives = 618/685 (90%), Gaps = 1/685 (0%)

Query: 4   MEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAECPA 63
           MEDILNLPVQDPPC EFSAAN+KWVKVEGGRQGGDDIAL+PF+RVE+FVKGESSNAECPA
Sbjct: 1   MEDILNLPVQDPPCAEFSAANIKWVKVEGGRQGGDDIALVPFSRVEDFVKGESSNAECPA 60

Query: 64  SFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGKGSR 123
           SFR+ESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESG GDGSNVKPATGKGSR
Sbjct: 61  SFRVESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGIGDGSNVKPATGKGSR 120

Query: 124 PGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAMYAP 183
           PGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILD DAVGTRAMYAP
Sbjct: 121 PGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDLDAVGTRAMYAP 180

Query: 184 RISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIRNSS 243
           RISE+LRQKVM+MLYVG+SLDNIIQHH E VQGHGGPHNRDDFLTRNDVRNMERV+RNSS
Sbjct: 181 RISEELRQKVMAMLYVGMSLDNIIQHHAEVVQGHGGPHNRDDFLTRNDVRNMERVVRNSS 240

Query: 244 HELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHS 303
           H+LH +D+ S K+WVQRH KHVFFFQD S S+PFIL IQTDWQLQQML YG+ G ++ HS
Sbjct: 241 HKLHANDDSSFKIWVQRHQKHVFFFQDNSGSDPFILGIQTDWQLQQMLRYGHTGSIASHS 300

Query: 304 TFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLS 363
            FGSKKLKYPL TLLVFDSS NAIPVAWIITSSF+ Q +HKW   LAE+IRTKDPRWR S
Sbjct: 301 KFGSKKLKYPLCTLLVFDSSQNAIPVAWIITSSFLSQEIHKWFSSLAEKIRTKDPRWRPS 360

Query: 364 AFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYS 423
           AFLVD+PS DIS IRE F CR+LLC WHVRR+WI++LLKKC N++VQ+EMFK L W+LYS
Sbjct: 361 AFLVDDPSLDISIIREAFHCRVLLCTWHVRRSWIRSLLKKCCNIDVQREMFKHLGWVLYS 420

Query: 424 SRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETY 483
           +RS+ N+ D IEEFMQV+VDQ  F+DYFK +WLP+IELWV GIRSLP+   EPLAAIE+Y
Sbjct: 421 TRSAANAADAIEEFMQVYVDQSIFIDYFKRRWLPYIELWVNGIRSLPLAGTEPLAAIESY 480

Query: 484 HLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFSTNAW 543
           H+RLKSKL  EQ  NFW R+DWL+HTLTT FHS YWLDQYS+ETGYF ++RD S   NAW
Sbjct: 481 HIRLKSKLLDEQYANFWKRIDWLVHTLTTAFHSSYWLDQYSVETGYFADVRDKSSLENAW 540

Query: 544 SQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCEHVI 603
            QALHI DV+VMLDEQNLQLAK+ISQ DR+LAY IWNPG+EFSLCDCPWSRLGN+C+H++
Sbjct: 541 YQALHISDVDVMLDEQNLQLAKVISQTDRSLAYIIWNPGTEFSLCDCPWSRLGNLCKHIV 600

Query: 604 KLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLEELS 663
           K+A++CK+RQVARPLL AQVYRQALL+LLQ+PPD+PLVLE+AI HATRLQQDIKGLE+LS
Sbjct: 601 KVAILCKNRQVARPLLVAQVYRQALLALLQDPPDNPLVLEHAIFHATRLQQDIKGLEDLS 660

Query: 664 NSGLLQPLPLEVNPHMALNHQLFPR 688
           N+GLLQPLP E+NP +  +  LFPR
Sbjct: 661 NNGLLQPLPPEMNPQLG-DSILFPR 684

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476078|ref|XP_002281999.2| PREDICTED: uncharacterized protein LOC100245761 [Vitis vinifera] gi|296081944|emb|CBI20949.3| unnamed protein product [Vitis vinifera]

 Score = 1182 bits (3059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/689 (80%), Positives = 618/689 (89%)

Query: 1   MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
           MPRMEDILNLPVQDPPC EFSAA++ W KVEGGRQGGDDIALIPF+RV++FVKGES+NAE
Sbjct: 8   MPRMEDILNLPVQDPPCAEFSAAHINWKKVEGGRQGGDDIALIPFSRVDDFVKGESTNAE 67

Query: 61  CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGK 120
           CPASFRIESRRKR EGSISKPRVDGYLEYTLYWCSYGPEDYRDSESG GD SN KPA+GK
Sbjct: 68  CPASFRIESRRKRPEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGLGDSSNNKPASGK 127

Query: 121 GSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAM 180
           GSRPGRRHMMRGCLCHFTVKRLYTRP LALIIYNQRKHVDKTGAPCHGILDRDAVGTRAM
Sbjct: 128 GSRPGRRHMMRGCLCHFTVKRLYTRPSLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAM 187

Query: 181 YAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIR 240
           YAPRISE+LRQKVMSMLYVGISLDNIIQHH+E VQ HGGPHNRDDFLTRNDVRNMERVIR
Sbjct: 188 YAPRISEELRQKVMSMLYVGISLDNIIQHHMEVVQNHGGPHNRDDFLTRNDVRNMERVIR 247

Query: 241 NSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMS 300
           NSSH L  +DECSVK W+QRH KHVFFFQ  S SEPFIL IQTDWQLQQMLHYG+NG ++
Sbjct: 248 NSSHMLLDNDECSVKAWMQRHQKHVFFFQANSGSEPFILGIQTDWQLQQMLHYGHNGSIA 307

Query: 301 FHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRW 360
            HSTFGSKKLKYPL +LLVFDSS NAIPVAW+ITSS +GQ +HKW+G+  ERIRTKDPRW
Sbjct: 308 SHSTFGSKKLKYPLCSLLVFDSSRNAIPVAWVITSSSIGQGIHKWMGIFVERIRTKDPRW 367

Query: 361 RLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWI 420
           R +AFLVD+PS +I  IRE FQCR+LLC+WHVRRAW+++LLKKC N++VQQEMFK L  I
Sbjct: 368 RPNAFLVDDPSIEIGVIREVFQCRVLLCLWHVRRAWMRSLLKKCCNLDVQQEMFKHLGQI 427

Query: 421 LYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAI 480
           LY +++ P  VD I+EFMQ+FVDQCAFM+YF+ +WLP IELWV GI++LPV + EP AAI
Sbjct: 428 LYCTKNRPIIVDAIQEFMQIFVDQCAFMNYFRRRWLPRIELWVNGIKTLPVASQEPNAAI 487

Query: 481 ETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFST 540
           E+YHL LK+KLF+E   N WPRVDWLIH LTTE HS YWL+QY +ETGYFENLRD SF+T
Sbjct: 488 ESYHLSLKTKLFNELYANHWPRVDWLIHILTTEIHSFYWLEQYIIETGYFENLRDVSFTT 547

Query: 541 NAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCE 600
           N+W +ALHIPD +V+LDEQNLQLAK+ISQ DRTLAYTIWNPGSEF +CDCPWSRLGN+C+
Sbjct: 548 NSWYRALHIPDADVLLDEQNLQLAKVISQTDRTLAYTIWNPGSEFCICDCPWSRLGNLCK 607

Query: 601 HVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLE 660
           H IK+A++CKSRQVARPLL+AQVYRQALL+LLQNPPDDPLVL++AI+H TRLQQDIKGLE
Sbjct: 608 HAIKVAILCKSRQVARPLLSAQVYRQALLTLLQNPPDDPLVLDHAILHVTRLQQDIKGLE 667

Query: 661 ELSNSGLLQPLPLEVNPHMALNHQLFPRL 689
           ELSNSGLLQPLP E N  M  N  +FPRL
Sbjct: 668 ELSNSGLLQPLPPETNSQMVDNIPIFPRL 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507794|ref|XP_003522649.1| PREDICTED: uncharacterized protein LOC100779025 [Glycine max]

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/689 (77%), Positives = 604/689 (87%)

Query: 1   MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
           MPRMEDILNLPVQDP   EFSAA++ WVK+EGGRQGGDDIALIPFARV++FVKGESSN E
Sbjct: 1   MPRMEDILNLPVQDPLYPEFSAAHINWVKLEGGRQGGDDIALIPFARVDDFVKGESSNPE 60

Query: 61  CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGK 120
           CPASFRIESRRKR  GSI+KPRVDGYLEYTLYWCSYGPEDYR+S+SG GDG++ KPA+GK
Sbjct: 61  CPASFRIESRRKRPVGSIAKPRVDGYLEYTLYWCSYGPEDYRESDSGVGDGTSTKPASGK 120

Query: 121 GSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAM 180
           GSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQR+HVDK+GAPCHG+LDRDAVGTRAM
Sbjct: 121 GSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRRHVDKSGAPCHGLLDRDAVGTRAM 180

Query: 181 YAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIR 240
           YAPRIS++LRQKVMSMLYVGISLD IIQHH E +Q  GGP NRDDFLTRNDVRNMER +R
Sbjct: 181 YAPRISDELRQKVMSMLYVGISLDKIIQHHAEGMQKQGGPQNRDDFLTRNDVRNMERTVR 240

Query: 241 NSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMS 300
           NSSHELH +DECSVK+WVQRH KHVF+FQD S SEPF+L IQTDWQLQQML YGNN  +S
Sbjct: 241 NSSHELHENDECSVKIWVQRHQKHVFYFQDNSGSEPFVLGIQTDWQLQQMLRYGNNSFIS 300

Query: 301 FHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRW 360
           FHS+FG KKLKYP+ +LLVF+SS NAIPVAWIITSS VG+ +HKWI LL ER+RTKDPRW
Sbjct: 301 FHSSFGLKKLKYPICSLLVFNSSQNAIPVAWIITSSSVGKAIHKWIVLLCERLRTKDPRW 360

Query: 361 RLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWI 420
           R +A L+D+PS D S IRE FQCRILLC WHVRR WIK LLKKC N+EVQ+EMFKQL WI
Sbjct: 361 RPNAILLDDPSLDYSIIREAFQCRILLCAWHVRRTWIKKLLKKCCNIEVQREMFKQLGWI 420

Query: 421 LYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAI 480
           LY ++  PN++D +EE MQ+FVDQCAFMDYFKS WL  I++W+  I+SL VTTPEP AAI
Sbjct: 421 LYCTKCGPNAMDAVEELMQIFVDQCAFMDYFKSHWLASIDMWINAIKSLSVTTPEPHAAI 480

Query: 481 ETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFST 540
           E+YHL+LKS L  E   NFWPRVDWLIH LTTEFHSLYWLDQYS+ETGYFENLRD+SFS+
Sbjct: 481 ESYHLKLKSMLLKENYANFWPRVDWLIHALTTEFHSLYWLDQYSLETGYFENLRDNSFSS 540

Query: 541 NAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCE 600
           NAW  ALHIPDV+V+LDEQNL LAK++SQ DR+L YT+ NPGSEFSLCDC WSRLGN+C+
Sbjct: 541 NAWYHALHIPDVDVILDEQNLHLAKVLSQTDRSLVYTVSNPGSEFSLCDCSWSRLGNLCK 600

Query: 601 HVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLE 660
           HVIK+A  C+SRQVARP L+AQVY+QALL+LL NPPDDPLVL++ I+H   LQQDIK LE
Sbjct: 601 HVIKVATFCRSRQVARPSLSAQVYKQALLTLLHNPPDDPLVLDHTILHVAHLQQDIKALE 660

Query: 661 ELSNSGLLQPLPLEVNPHMALNHQLFPRL 689
           +LSN+GLLQP+  +++  MA N  LF R+
Sbjct: 661 DLSNNGLLQPIAPDLSSQMAENPLLFQRI 689

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437368|ref|XP_004136464.1| PREDICTED: uncharacterized protein LOC101215653 [Cucumis sativus]

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/682 (66%), Positives = 542/682 (79%), Gaps = 12/682 (1%)

Query: 1   MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
           MPR EDIL L VQDPPC+EFSAA++KW KVEGGRQGG DIA++PF+RVE+FVKGESSN E
Sbjct: 1   MPRTEDILKLQVQDPPCLEFSAAHVKWEKVEGGRQGGADIAVVPFSRVEDFVKGESSNPE 60

Query: 61  CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGK 120
            PA FRIESRRKR+ GS+SKPRVDGYLEY LYWCSYGPEDYR SE+G    S +KPA+GK
Sbjct: 61  SPARFRIESRRKRTAGSVSKPRVDGYLEYILYWCSYGPEDYRVSEAGVRSSSIIKPASGK 120

Query: 121 GSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAM 180
           GSRPGRRHMMRGCLCHFTVKRLY +P LALIIYNQRKH+DK+GAPCHGILDRDAVGTRAM
Sbjct: 121 GSRPGRRHMMRGCLCHFTVKRLYAQPHLALIIYNQRKHIDKSGAPCHGILDRDAVGTRAM 180

Query: 181 YAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIR 240
           Y  RISE+LRQK+MSMLYVGI ++NI+QHH E VQ HGGP NRDDFL+R DVRNMERVIR
Sbjct: 181 YTQRISEELRQKIMSMLYVGIPIENIVQHHSEVVQRHGGPPNRDDFLSRIDVRNMERVIR 240

Query: 241 NSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMS 300
           NSSHELH +D+CSVK+WVQRH K +FFFQ+ S  E F+L IQTDWQLQQML YG+NG ++
Sbjct: 241 NSSHELHTNDDCSVKIWVQRHRKVIFFFQESSDCERFVLGIQTDWQLQQMLRYGHNGSVA 300

Query: 301 FHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRW 360
            HST GSKKL++PL +LLVFDSS N IPVAWII SSFV Q + KW+GLL ER+  KDP W
Sbjct: 301 SHSTLGSKKLRFPLCSLLVFDSSQNTIPVAWIIASSFVDQDIRKWLGLLVERLHAKDPTW 360

Query: 361 RLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWI 420
           ++  FL+DNPSF++STIR       L+     R  WI+N+LKKC N++VQ+EMFKQL  +
Sbjct: 361 KIDTFLLDNPSFEVSTIR-------LILDLPYRFNWIRNILKKCPNLDVQREMFKQLGKV 413

Query: 421 LYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAI 480
           LY +R        +E+F + F DQC F+DY    WLP IELWV  +RS PV+T E  AAI
Sbjct: 414 LYCTRIGLGFAYAVEQFKRRFSDQCVFVDYLTRTWLPDIELWVNSLRSHPVSTLEANAAI 473

Query: 481 ETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFST 540
           E YH+RLKSKLF EQ+ +   RVDWLIH LTT+FHS YWLDQYS++TGYF + RD S  T
Sbjct: 474 EAYHIRLKSKLFKEQSNSSSSRVDWLIHILTTQFHSSYWLDQYSLDTGYFGSFRDKSILT 533

Query: 541 NAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCE 600
           NAW++ALHIPDV+V++DE NLQ AK+ISQ+ R L YTIW+PGSEFSLCDCPWSR+GN+CE
Sbjct: 534 NAWNKALHIPDVDVIVDESNLQFAKVISQSKRNLEYTIWDPGSEFSLCDCPWSRMGNLCE 593

Query: 601 HVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLE 660
           HVIK++++CK +Q ARPL+AAQVY+  + +   N    P+  ++ +     +Q+  KGLE
Sbjct: 594 HVIKVSLLCKRQQAARPLVAAQVYQDRVPNFQLN----PVTFDHGMPLVNCVQRG-KGLE 648

Query: 661 ELSNSGLLQPLPLEVNPHMALN 682
            LS+SGL QP+ L+ N  +  N
Sbjct: 649 NLSDSGLDQPVHLDTNVQLKDN 670

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466407|ref|XP_003603488.1| hypothetical protein MTR_3g108220 [Medicago truncatula] gi|355492536|gb|AES73739.1| hypothetical protein MTR_3g108220 [Medicago truncatula]

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/573 (67%), Positives = 448/573 (78%), Gaps = 47/573 (8%)

Query: 1   MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
           +PRME+IL LPVQDPPC EFSA  +  + +EGGRQGGDDIALIPFARV++FVK ESSN  
Sbjct: 18  LPRMEEILTLPVQDPPCAEFSAETINLLNLEGGRQGGDDIALIPFARVDDFVKEESSNPT 77

Query: 61  CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGK 120
           CPA+FR+ESRRKR+ GS++KPRVDGYLEYTLYWCSYGPEDYR+SE  N           +
Sbjct: 78  CPANFRVESRRKRASGSVAKPRVDGYLEYTLYWCSYGPEDYRESERVN-----------R 126

Query: 121 GSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAM 180
           GSR GRRHMMRGCLCHFTVKRLYTRP LALIIY+Q+                     RAM
Sbjct: 127 GSRLGRRHMMRGCLCHFTVKRLYTRPHLALIIYDQK---------------------RAM 165

Query: 181 YAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIR 240
           YAPRIS++LRQKVMSMLYVGISLDNI+QHH E  Q  GGP NR DFLTRNDVRNMER I 
Sbjct: 166 YAPRISDELRQKVMSMLYVGISLDNILQHHAEVTQKQGGPLNRGDFLTRNDVRNMERTIH 225

Query: 241 NSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMS 300
           NSS EL  ++ECSVK+W+QRH K +F+FQD S SE FI+ IQTDWQLQQML YG+N  +S
Sbjct: 226 NSSRELLGNEECSVKIWIQRHQKDIFYFQDNSGSESFIVAIQTDWQLQQMLRYGSNSFIS 285

Query: 301 FHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRW 360
           FHS FG KKLKYP+ +LLVFDSS NAIPVAWII+SSFVG+ +HKWI LL+ER+RTKDPRW
Sbjct: 286 FHSAFGLKKLKYPVCSLLVFDSSQNAIPVAWIISSSFVGKDIHKWIVLLSERLRTKDPRW 345

Query: 361 RLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWI 420
           + +A  +D+PSF+   IRE FQCRILLC WHVRR  IK L KKC N EVQQ MF+QL  I
Sbjct: 346 KPNAIFLDDPSFNYYIIREAFQCRILLCTWHVRRTCIKMLFKKCCNFEVQQRMFRQLGSI 405

Query: 421 LYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAI 480
           LYS+R  PN++D I+E MQ+FVDQ                +W+ GI+SLPVTTP+P  A+
Sbjct: 406 LYSARCGPNAMDAIDELMQIFVDQ---------------YVWINGIKSLPVTTPKPHDAM 450

Query: 481 ETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFST 540
           E+YHL+LKS L  E + NFW RVDWLIHTLTTEFHSLYWLDQYS+ETGYFENLRD+SFST
Sbjct: 451 ESYHLKLKSTLLKESHANFWSRVDWLIHTLTTEFHSLYWLDQYSLETGYFENLRDNSFST 510

Query: 541 NAWSQALHIPDVNVMLDEQNLQLAKIISQADRT 573
           NAW  ALHIPDV+V+L+EQNL LAKI+SQ  +T
Sbjct: 511 NAWYHALHIPDVDVVLNEQNLHLAKILSQLTKT 543

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431451|ref|XP_002274170.1| PREDICTED: uncharacterized protein LOC100247174 [Vitis vinifera] gi|296088541|emb|CBI37532.3| unnamed protein product [Vitis vinifera]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/682 (46%), Positives = 470/682 (68%), Gaps = 16/682 (2%)

Query: 1   MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
           M  +E IL++PVQDP   EFS+A+L W K  G  +  DD+ALIP+ARV+ F+ GE SN E
Sbjct: 1   MDIIESILDIPVQDPKEEEFSSADLNWTKF-GNPEHHDDVALIPYARVDAFIIGECSNVE 59

Query: 61  CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPA--- 117
           CP  F IE  RKRS+GS+ + + D YLEY LYWCS+GPE+Y       G+G  + P+   
Sbjct: 60  CPTRFHIERGRKRSKGSLKEYKNDEYLEYRLYWCSFGPENY-------GEGGGILPSRRY 112

Query: 118 -TGKGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVG 176
                +R  R   MRGC CHF VKRLY RP LALIIYN R+HV+K+G  CHG LDRDA+G
Sbjct: 113 RLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALIIYNDRRHVNKSGFVCHGPLDRDAIG 172

Query: 177 TRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNME 236
             A   P I  +++Q+ MSM+Y+GI  +N+++ HIE +Q + G + + + L    V  + 
Sbjct: 173 PGAKKIPYICSEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNAKVNSLASQYVHKLG 232

Query: 237 RVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNN 296
            +I+ S+HEL +DD+ S++MWV+R+ K +FF+QD S ++PFIL IQT+WQLQQM+ +G+ 
Sbjct: 233 MIIKRSTHELDLDDQASIRMWVERNKKSIFFYQDSSEADPFILGIQTEWQLQQMIRFGHR 292

Query: 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTK 356
            +M+  STFG K+LKYPL TLLVFDS  +A+PVAWIIT SF    V KW+  L +R R  
Sbjct: 293 SIMAVDSTFGIKRLKYPLCTLLVFDSRQHALPVAWIITRSFAKPDVSKWMKALLDRARGI 352

Query: 357 DPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQ 416
           D  W++S FL+D+ + +I +IR+ F C +L  +W VRR+W++N++KK  NVEVQ+EMFK+
Sbjct: 353 DIGWKVSGFLIDDAAAEIDSIRDVFCCPVLFSLWRVRRSWLRNIIKKSSNVEVQREMFKR 412

Query: 417 LSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEP 476
           L  I+YS  S  +S+  +EEF Q FVDQ +F++YFK+ W+P IE+W+  +++LP+ + E 
Sbjct: 413 LGKIVYSIWSGVDSLVALEEFTQDFVDQTSFIEYFKALWMPKIEMWIDMMKTLPLASQEA 472

Query: 477 LAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDD 536
             AIE YH++LK KL+ + ++    RVDWL+H LTTE HS YWLD+Y+ E+  F+N++++
Sbjct: 473 SGAIEAYHVKLKVKLYDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEE 532

Query: 537 SFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLG 596
             ++ +W +AL IPD +V+L+++N   AK++SQ D  L + +WNPGSEF+ CDC W+  G
Sbjct: 533 YIASTSWHRALRIPDTSVILEDKNQLFAKVLSQKDSNLTHLVWNPGSEFAFCDCEWAMQG 592

Query: 597 NVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDI 656
           N+C+H+IK+ M+CK+ Q  +  ++ Q +R+ L++L + P DD + L+ A+    ++   I
Sbjct: 593 NLCKHIIKVNMICKNHQAYQSSMSFQSFREILMNLWRKPMDDSVALDQAVAWTHQMLDQI 652

Query: 657 KGLEELSNS----GLLQPLPLE 674
           + L EL+++     ++  LPL+
Sbjct: 653 QKLVELNSANDIGSVVNNLPLK 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242037417|ref|XP_002466103.1| hypothetical protein SORBIDRAFT_01g001310 [Sorghum bicolor] gi|241919957|gb|EER93101.1| hypothetical protein SORBIDRAFT_01g001310 [Sorghum bicolor]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/667 (46%), Positives = 446/667 (66%), Gaps = 11/667 (1%)

Query: 4   MEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAECPA 63
           ++ + +LPVQDPP  EFSAA+L WVK        DD+ALIP+ R+E F+ GES+N ECP 
Sbjct: 13  LQSVSDLPVQDPPGEEFSAADLTWVKYASSEHHRDDVALIPYDRMEAFIGGESNNPECPT 72

Query: 64  SFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPAT----G 119
            F IE  RKR  GS+ + R D YL Y +YWCS+GPE+Y       G+G  + P+      
Sbjct: 73  RFHIERGRKRERGSLREYRSDEYLLYRMYWCSFGPENY-------GEGGTILPSRKYRLN 125

Query: 120 KGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRA 179
             +R  R   MRGC CHFTVKRLY RP L LIIY++R+HV+K+G  CHG LDRDA+G  A
Sbjct: 126 TRNRAARPQSMRGCTCHFTVKRLYARPSLLLIIYHERRHVNKSGFICHGPLDRDAIGPGA 185

Query: 180 MYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVI 239
              P I  +++Q+ MS++Y+G+  +NI+Q HIE +Q +     + D L    V+ +  +I
Sbjct: 186 RKMPYIGSEIQQQTMSLIYLGVPEENILQTHIEGIQRYCSADAQVDNLASQYVQKLGMII 245

Query: 240 RNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLM 299
           + S+HEL +DD+ S++MWV R+ K VFF+QD + ++ FIL IQT+WQLQQM+ +G+  L+
Sbjct: 246 KRSTHELDLDDQASIRMWVDRNKKSVFFYQDSTEADAFILGIQTEWQLQQMMRFGHQSLL 305

Query: 300 SFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPR 359
           + HS+FG  KLKYPL TLLVFDS  +A+PVAW+IT S   +   KW+  L +RI + D  
Sbjct: 306 ASHSSFGVSKLKYPLHTLLVFDSRQHALPVAWVITRSVTNKDTLKWMRALTDRIHSIDST 365

Query: 360 WRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSW 419
           WR+  F++D+P+ ++  IRE F C +L  VWH+RR W+KN++KKC NVEVQ+E+F QL  
Sbjct: 366 WRIGGFIIDDPASELGPIREVFACPVLFSVWHIRRTWLKNVIKKCSNVEVQREIFIQLGK 425

Query: 420 ILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAA 479
           I+YS  S  N +D + +  Q FVDQ  F+ YFKS W+P +E+W+  IR+LP+ + E   A
Sbjct: 426 IIYSIWSEKNPMDALGKLFQDFVDQTTFIKYFKSFWVPKLEMWIDSIRNLPLASQESCGA 485

Query: 480 IETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFS 539
           IE YHL+LK K + +  ++   RVDWL+H LTTE HS YW++ ++ E+G F  ++ D  +
Sbjct: 486 IEGYHLKLKVKAYDDVQLDALQRVDWLVHKLTTELHSSYWINLFADESGSFPEVKADYIA 545

Query: 540 TNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVC 599
           + +W +AL IPD  V  D++   LA+++SQ D +   T+WNPGSEFSLCDC WS  GN+C
Sbjct: 546 STSWQRALQIPDAAVTFDDKEPLLARVVSQKDTSQTRTVWNPGSEFSLCDCSWSMQGNLC 605

Query: 600 EHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGL 659
           +HV+K+ M+C +R+  +P L+ Q Y+  LL L Q P DD   L+ ++    ++Q+ IK +
Sbjct: 606 KHVLKVNMMCGARKDFQPSLSFQSYQHVLLDLWQKPLDDSFSLDLSVAWVMQMQEKIKHV 665

Query: 660 EELSNSG 666
            EL+ SG
Sbjct: 666 AELATSG 672

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085354|emb|CBI29086.3| unnamed protein product [Vitis vinifera]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/670 (47%), Positives = 450/670 (67%), Gaps = 15/670 (2%)

Query: 1   MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
           M R ++IL+LPVQ+PP +EFS+A + W KVEG R   D +ALIPFARV++FV+GES+N +
Sbjct: 55  MARWDEILSLPVQNPPTLEFSSAEIVWSKVEGWRDNIDRVALIPFARVDDFVRGESANKD 114

Query: 61  CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATG- 119
           CP  F +E+RR+R      KP+VDG LEY LYWCS+GP+D+R        G  V+P+   
Sbjct: 115 CPTRFHVEARRRRPPEMPYKPKVDGILEYILYWCSFGPDDHRK-------GGIVRPSRST 167

Query: 120 ---KGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVG 176
              K    GR +  RGC CHF VKRL   P +ALIIYNQ KHVDK G PCHG  D+ A G
Sbjct: 168 YVPKKKSAGRPNTKRGCTCHFIVKRLIAEPSVALIIYNQDKHVDKKGLPCHGPQDKKAAG 227

Query: 177 TRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNME 236
           TRAM+AP ISEDLR +V+S+L+VG+S++ I+Q H E+V+  GGP NRDD LT   VR  E
Sbjct: 228 TRAMFAPYISEDLRLRVLSLLHVGVSVETIMQRHSESVKRQGGPCNRDDLLTHRYVRRQE 287

Query: 237 RVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNN 296
           R IR S++EL  DD  S++MWV+ H  HVFF+QD+S SEPF L IQT+WQLQQM+ +GN 
Sbjct: 288 RSIRRSTYELDTDDAISIRMWVESHQSHVFFYQDFSDSEPFTLGIQTEWQLQQMIRFGNR 347

Query: 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTK 356
            L++  S FGS KLKYP+ +L+VF+S   AIPVAWII+  F     HKW+  L  R+ TK
Sbjct: 348 SLVASDSRFGSNKLKYPIHSLIVFNSDKKAIPVAWIISPIFSSGDAHKWMRALYNRVHTK 407

Query: 357 DPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQ 416
           DP W+L+ F+VD+P  D+ TIRE FQC +L+C W VR AW KNL+KKC  +E++ E+ +Q
Sbjct: 408 DPTWKLAGFIVDDPLADVLTIREVFQCSVLICFWRVRHAWHKNLVKKCSGIEMRAEISRQ 467

Query: 417 LSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEP 476
           L   +        +V   E+ M+  VD   FMDYFK+ W P + +W++ +++LP+ + E 
Sbjct: 468 LGQAVSKVCRGHATVGVFEDIMEDLVDSSDFMDYFKAIWYPRMGVWISALQTLPLASQET 527

Query: 477 LAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDD 536
            AA+E YH +LK +L +E+  + + R DWLI  L T+ HS +WLD+YS +  +    RD+
Sbjct: 528 CAAMEFYHNQLKLRLLNEKEPSVYQRADWLIDKLGTKVHSYFWLDEYSGKDDFSRYWRDE 587

Query: 537 SFST-NAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRL 595
             S   +W +AL IPD +V+L+    + AK+I Q D+  A+ +WNPGSE+++CDC W+ +
Sbjct: 588 WVSGLTSWRKALKIPDSDVVLER---RFAKVIDQQDQDRAHIVWNPGSEYAICDCGWAEM 644

Query: 596 GNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQD 655
           GN+CEHV K+  VC++   +   ++   Y+QAL+++L  PP+D L+ ++A+  A  +Q  
Sbjct: 645 GNLCEHVFKVISVCRNNGSSMSSISLFQYKQALINMLNCPPNDSLIRDHAVSLAVHVQIQ 704

Query: 656 IKGLEELSNS 665
           +  L +  +S
Sbjct: 705 LNTLVDPESS 714

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449780|ref|XP_002271166.1| PREDICTED: uncharacterized protein LOC100264354 [Vitis vinifera]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/664 (48%), Positives = 447/664 (67%), Gaps = 15/664 (2%)

Query: 1   MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
           M R ++IL+LPVQ+PP +EFS+A + W KVEG R   D +ALIPFARV++FV+GES+N +
Sbjct: 1   MARWDEILSLPVQNPPTLEFSSAEIVWSKVEGWRDNIDRVALIPFARVDDFVRGESANKD 60

Query: 61  CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATG- 119
           CP  F +E+RR+R      KP+VDG LEY LYWCS+GP+D+R        G  V+P+   
Sbjct: 61  CPTRFHVEARRRRPPEMPYKPKVDGILEYILYWCSFGPDDHRK-------GGIVRPSRST 113

Query: 120 ---KGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVG 176
              K    GR +  RGC CHF VKRL   P +ALIIYNQ KHVDK G PCHG  D+ A G
Sbjct: 114 YVPKKKSAGRPNTKRGCTCHFIVKRLIAEPSVALIIYNQDKHVDKKGLPCHGPQDKKAAG 173

Query: 177 TRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNME 236
           TRAM+AP ISEDLR +V+S+L+VG+S++ I+Q H E+V+  GGP NRDD LT   VR  E
Sbjct: 174 TRAMFAPYISEDLRLRVLSLLHVGVSVETIMQRHSESVKRQGGPCNRDDLLTHRYVRRQE 233

Query: 237 RVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNN 296
           R IR S++EL  DD  S++MWV+ H  HVFF+QD+S SEPF L IQT+WQLQQM+ +GN 
Sbjct: 234 RSIRRSTYELDTDDAISIRMWVESHQSHVFFYQDFSDSEPFTLGIQTEWQLQQMIRFGNR 293

Query: 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTK 356
            L++  S FGS KLKYP+ +L+VF+S   AIPVAWII+  F     HKW+  L  R+ TK
Sbjct: 294 SLVASDSRFGSNKLKYPIHSLIVFNSDKKAIPVAWIISPIFSSGDAHKWMRALYNRVHTK 353

Query: 357 DPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQ 416
           DP W+L+ F+VD+P  D+ TIRE FQC +L+C W VR AW KNL+KKC  +E++ E+ +Q
Sbjct: 354 DPTWKLAGFIVDDPLADVLTIREVFQCSVLICFWRVRHAWHKNLVKKCSGIEMRAEISRQ 413

Query: 417 LSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEP 476
           L   +        +V   E+ M+  VD   FMDYFK+ W P + +W++ +++LP+ + E 
Sbjct: 414 LGQAVSKVCRGHATVGVFEDIMEDLVDSSDFMDYFKAIWYPRMGVWISALQTLPLASQET 473

Query: 477 LAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDD 536
            AA+E YH +LK +L +E+  + + R DWLI  L T+ HS +WLD+YS +  +    RD+
Sbjct: 474 CAAMEFYHNQLKLRLLNEKEPSVYQRADWLIDKLGTKVHSYFWLDEYSGKDDFSRYWRDE 533

Query: 537 SFST-NAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRL 595
             S   +W +AL IPD +V+L+    + AK+I Q D+  A+ +WNPGSE+++CDC W+ +
Sbjct: 534 WVSGLTSWRKALKIPDSDVVLER---RFAKVIDQQDQDRAHIVWNPGSEYAICDCGWAEM 590

Query: 596 GNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQD 655
           GN+CEHV K+  VC++   +   ++   Y+QAL+++L  PP+D L+ ++A+  A  +Q  
Sbjct: 591 GNLCEHVFKVISVCRNNGSSMSSISLFQYKQALINMLNCPPNDSLIRDHAVSLAVHVQIQ 650

Query: 656 IKGL 659
           +  L
Sbjct: 651 LNTL 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574517|ref|XP_002528170.1| conserved hypothetical protein [Ricinus communis] gi|223532427|gb|EEF34221.1| conserved hypothetical protein [Ricinus communis]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/670 (46%), Positives = 446/670 (66%), Gaps = 15/670 (2%)

Query: 1   MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
           M R ++IL+LPVQ+PP +EFSA +L W K+EG R   D +ALIPF RV +FV+GES+N +
Sbjct: 1   MARWDEILSLPVQNPPTLEFSANDLVWSKIEGWRDNIDRLALIPFDRVADFVRGESANKD 60

Query: 61  CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPA--- 117
           CP  F +E+RR+R   +  K +VDG LEY LYWCS+GP+D+R        G  V+P+   
Sbjct: 61  CPTRFHVEARRRRPTEASYKQKVDGILEYILYWCSFGPDDHRK-------GGIVRPSRTT 113

Query: 118 -TGKGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVG 176
              K    GR +  RGC CHF VKRL   P +ALIIYNQ KHVDK G PCHG  D+ A G
Sbjct: 114 NVPKKKNAGRPNTKRGCTCHFIVKRLIAEPSVALIIYNQDKHVDKKGLPCHGPQDKKAEG 173

Query: 177 TRAMYAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNME 236
           TRAMYAP IS++LR +V+S+LYVG+S++ I+Q H E+V+  GGP NRDD LT   VR  E
Sbjct: 174 TRAMYAPYISDELRLRVLSLLYVGVSVETIMQRHNESVERQGGPCNRDDLLTHRYVRRQE 233

Query: 237 RVIRNSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNN 296
           R IR S++EL  DD  S+ MWV+ HH HVFF++D++ S+PF L IQT+WQLQQM+ +GN 
Sbjct: 234 RSIRRSTYELDTDDAVSISMWVESHHNHVFFYEDFNNSDPFTLGIQTEWQLQQMIQFGNR 293

Query: 297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTK 356
           GL++  S FG+ KLKYP+ +L+VF+S    IPVAWIIT  F     HKW+  L  R+RTK
Sbjct: 294 GLLASDSRFGTNKLKYPVHSLVVFNSEKKVIPVAWIITPRFATADAHKWMRALYNRVRTK 353

Query: 357 DPRWRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQ 416
           DP W+L+ F+VD+P  DI TIR+ F+C +L+  W VR AW KNL+K+C   E++ +M ++
Sbjct: 354 DPTWKLAGFIVDDPLTDIHTIRDVFECSVLISFWRVRHAWHKNLVKRCSETEMRVQMSRR 413

Query: 417 LSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEP 476
           L  ++    S   ++D  E F++ FVD   FMDYFK+ W P I +W   +++LP+ + E 
Sbjct: 414 LGDVVDDISSGHGTLDLFEIFIEDFVDGSDFMDYFKAVWYPRIGIWTAALKALPLASLET 473

Query: 477 LAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDD 536
            AA+E YH +LK +L  E++   + R DWL+  L T+ HS +WLD+YS +  +    +D+
Sbjct: 474 CAAMELYHNQLKVRLLSEKDPGVYQRADWLVDKLGTKVHSYFWLDEYSEKDDFVRYWKDE 533

Query: 537 -SFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRL 595
            +    AW +AL++PDV+V+++    + AK+  Q DR   + +WNPGS+F++CDC  + +
Sbjct: 534 WATGLTAWRRALNVPDVDVVMEG---RCAKVYDQLDRDKVHVVWNPGSDFAICDCSLAEM 590

Query: 596 GNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQD 655
           GN+CEHVIK+  +C  +   RP ++   Y  AL+ +L  PP D L+ ++A+  A  + ++
Sbjct: 591 GNLCEHVIKVRRICHEKGYRRPSISLLQYNHALIDMLYCPPHDSLIHDHAVSLAVAVNKE 650

Query: 656 IKGLEELSNS 665
           +  L +L +S
Sbjct: 651 LDALVDLGSS 660

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	690
TAIR|locus:2036541	703	AT1G60560 [Arabidopsis thalian	0.971	0.953	0.436	1.6e-166
TAIR|locus:2129271	778	AT4G13970 [Arabidopsis thalian	0.955	0.847	0.435	8.4e-161
WB|WBGene00013537	915	Y73F8A.33 [Caenorhabditis eleg	0.388	0.292	0.246	3.7e-07
CGD|CAL0000055	668	orf19.7545 [Candida albicans (	0.573	0.592	0.226	8.2e-07
UNIPROTKB|Q5AAE4	668	CaO19.7545 "Putative uncharact	0.573	0.592	0.226	8.2e-07

TAIR|locus:2036541 AT1G60560 [Arabidopsis thaliana (taxid:3702)]

 Score = 1620 (575.3 bits), Expect = 1.6e-166, P = 1.6e-166
 Identities = 296/678 (43%), Positives = 452/678 (66%)

Query:     1 MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
             M  +E +  +PVQ+P   +FS A+L W K  G  +  D +AL+P+ARV+EF+ GE SNAE
Sbjct:     1 MEIVESLEEIPVQNPQVEDFSWADLTWTKF-GTSEHHDQVALVPYARVDEFIIGECSNAE 59

Query:    61 CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGK 120
             CP  F IE  RKRS GS+ + + D YLEY LYWCS+GPE+Y +   G G   + K     
Sbjct:    60 CPTRFHIERGRKRSRGSLKEYKSDEYLEYRLYWCSFGPENYGE---GGGVLPSRKYRLNT 116

Query:   121 GSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAM 180
              +R  R   MRGC CHF VKRLY RP LAL+IYN+R+HV+K G  CHG LDRDA+G  A 
Sbjct:   117 RNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNERRHVNKAGFVCHGPLDRDAIGPGAK 176

Query:   181 YAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIR 240
               P I  +++Q+ MSM+Y+GI  +N+++ HIE +Q + G     D L    V  +  +I+
Sbjct:   177 KIPYICNEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSDATVDSLASQYVHKLGMIIK 236

Query:   241 NSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMS 300
              S+HEL +DD+ S+K+W +R+ K +FF+Q+ S ++ F+L IQT+WQLQQ++ +G+  L++
Sbjct:   237 RSTHELDLDDQASIKIWAERNKKSIFFYQESSETDQFMLGIQTEWQLQQLVRFGHCSLVA 296

Query:   301 FHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRW 360
               STFG K+LKYPL TLLVFDS H+A+PVAWII+ S++   V KW+ +L +R ++ +P +
Sbjct:   297 ADSTFGIKRLKYPLCTLLVFDSRHHALPVAWIISRSYLKSDVEKWMKILLQRAQSVEPGF 356

Query:   361 RLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWI 420
             +++ F++D+ + +   IR+ F C IL  +W VRR+W++N++KKC ++EVQ+++FK L  +
Sbjct:   357 KINGFIIDDAATETDPIRDTFCCPILFSLWRVRRSWLRNVVKKCDSIEVQRDLFKCLGEL 416

Query:   421 LYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAI 480
             +YS     ++   +E+  Q FVDQ AFM YF S WLP I +W++ ++SLP+ + E   AI
Sbjct:   417 VYSIWDGVDTTKALEKLTQDFVDQTAFMQYFTSTWLPKIGMWLSTMKSLPLASQEACGAI 476

Query:   481 ETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFST 540
             E YH++LK KLF + ++    RVDWL+H LTTE HS YWLD+Y+ E+  F+N++++  ++
Sbjct:   477 EAYHIKLKVKLFDDTHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEEYIAS 536

Query:   541 NAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVCE 600
              +W +A+ IPD  V LDE N+ LAK+ SQ D  +   +WNPGSEF+ CDC WS  GN+C+
Sbjct:   537 TSWYRAMEIPDSAVTLDENNILLAKVQSQRDSDVTRVVWNPGSEFAFCDCTWSLQGNLCK 596

Query:   601 HVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGLE 660
             H+IK+  +C++R+     ++ + +++ L ++   P DD + L+ ++    ++   IK L 
Sbjct:   597 HIIKVNTMCENREGYGDSMSLRSFKEKLRNIKMKPMDDSIALDLSMALTLQMFDQIKQLV 656

Query:   661 ELSN----SGLLQPLPLE 674
              LS     S ++  LP++
Sbjct:   657 RLSGTNDISNIVNDLPVK 674

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2129271 AT4G13970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
 Identities = 290/666 (43%), Positives = 419/666 (62%)

Query:     1 MPRMEDILNLPVQDPPCVEFSAANLKWVKVEGGRQGGDDIALIPFARVEEFVKGESSNAE 60
             M R + I +LPVQ+P   EFS+ +L W KVEG R   D +ALIP+ RV++FV+GE SN +
Sbjct:     1 MARWDQIFSLPVQNPTLPEFSSTDLVWSKVEGYRDNIDRLALIPYTRVDDFVRGECSNKD 60

Query:    61 CPASFRIESRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGK 120
             CP SF +E+RR++++G   KP+VDG LEY LYWCS+GP+D R   +     S   P    
Sbjct:    61 CPTSFHVEARRRKAKGKKYKPKVDGILEYILYWCSFGPDDNRKGGTVRPSRSTYVPKKNN 120

Query:   121 GSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIYNQRKHVDKTGAPCHGILDRDAVGTRAM 180
               RP  +   RGC CHF VKRL   P +AL+IYN  KHVD+ G PCHG  D+ A GTRAM
Sbjct:   121 AGRPNSK---RGCRCHFIVKRLIAEPTVALVIYNNDKHVDEKGFPCHGPQDKKAAGTRAM 177

Query:   181 YAPRISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIR 240
             +AP ISEDLR +V S+LYVG+S++ I+Q H E+V+  GGP NRDD LT   VR +ER IR
Sbjct:   178 FAPYISEDLRLRVSSLLYVGVSVETIMQRHNESVEKQGGPSNRDDLLTHRYVRRLERSIR 237

Query:   241 NSSHELHVDDECSVKMWVQRHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMS 300
              S++EL  DD+ S+ MWV+ H  HVFFF+ +S ++PF L IQT+WQLQQM+ +GN  L++
Sbjct:   238 RSTYELDEDDDVSISMWVESHQSHVFFFEGFSDTDPFSLGIQTEWQLQQMIRFGNCRLLA 297

Query:   301 FHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRW 360
               S FG+  LKYP+ +L+VFDS + AIPVAWII   F     ++W+  L  R+  KDP W
Sbjct:   298 SDSRFGTNTLKYPIHSLVVFDSENKAIPVAWIIAPRFSSGDAYRWMRALCNRVHAKDPSW 357

Query:   361 RLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWI 420
             +++ F+VD+P  DI  IR+ FQC +L   W +R AW KN++K+C   + + E+ + L   
Sbjct:   358 KVAGFIVDDPFADIIAIRDVFQCPVLFSFWRLRHAWHKNIIKRCRETKTRVEISRHLGQA 417

Query:   421 LYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAI 480
             +        +    + F++ FV    F++YF+S W P I  W + ++SLP+ + E  AA+
Sbjct:   418 VDKISRRQGTATLFDSFVEDFVGSPEFVEYFRSVWSPRIGAWTSALQSLPLASQETCAAM 477

Query:   481 ETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFENLRDDSFS- 539
             E YH +LK +L +E++   + R DWL+  L T+ HS +WLD+YS +  +    +++  S 
Sbjct:   478 ELYHYQLKCRLLNERDSEAYQRADWLVDKLGTKVHSYFWLDEYSGKDNFARYWKEEWVSG 537

Query:   540 TNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAYTIWNPGSEFSLCDCPWSRLGNVC 599
               ++ +AL IPD +V++   +   AKI  + D    + +WNPGS+F +C C W+  G +C
Sbjct:   538 LTSFRKALSIPDSDVVISGMS---AKITDECDGNEIHVVWNPGSQFGVCSCSWAEKGYIC 594

Query:   600 EHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKGL 659
             +H+IKL  +C   + AR   +   Y Q L+ LL+ PP D L  +YA+  A  +++ I  L
Sbjct:   595 KHMIKLTQLCLGNRAARQSASLLQYYQTLIDLLRCPPHDSLFRDYAVSLAVSVEKQINAL 654

Query:   660 EELSNS 665
               L  S
Sbjct:   655 GYLQKS 660

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00013537 Y73F8A.33 [Caenorhabditis elegans (taxid:6239)]

 Score = 154 (59.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 73/296 (24%), Positives = 129/296 (43%)

Query:   230 NDVRNMERVIRNSSHELHVDDECSVKMWVQRHHKH--VFFFQDYSVSEPFILVIQTDWQL 287
             +D+R + +    +   L  +D  S++  V R+     + FF   S       V+ T  Q 
Sbjct:   289 SDLRYLRKKYNLAEGRLDENDFISLQKRVDRNWPEDGIRFF---SPPRDDGAVVMTPDQK 345

Query:   288 QQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIG 347
             +    YGN+G+     T    K    L+T+LV +     IPVA++I+S+   + V +   
Sbjct:   346 ELCERYGNDGIC-IDDTHNPSKYNLKLTTMLVVNGHGRGIPVAYMISSTVTQEDVKQLFE 404

Query:   348 LLAERIRTKDPRWRLSAFLVDNP-SF--DISTIRENFQCRILLCVWHVRRAWIKN---LL 401
              + + I    P++    F+ D   +F    + + +N + + L C+WHV+RA  +N   LL
Sbjct:   405 CIVKEIPDFHPQY----FMSDEAHAFWNGYNCVLKNHKTQRLWCIWHVQRALFENADKLL 460

Query:   402 KKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVDQCA-FMDYFKSQWLPHIE 460
              KC    V+  +   +     +     N + T+ E ++   +    + DYF+   L + +
Sbjct:   461 PKCEAETVKGTLTSMMGEP--TKAKYENLLATLLEHLENDCENGKQYADYFRRSHLDYDK 518

Query:   461 LWVTGIR-SLPVTTPEPLAAIETYHLRLKSKLFHEQ-NVNFWPRVDWLIHTLTTEF 514
             LW    R   P  T       E++H  LK +  H Q + N   R+D L+  L   F
Sbjct:   519 LWAGCFRRGAPFQTS---MFSESWHAALKKE--HLQLHTNI--RIDALLKVLYDAF 567

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

CGD|CAL0000055 orf19.7545 [Candida albicans (taxid:5476)]

 Score = 149 (57.5 bits), Expect = 8.2e-07, P = 8.2e-07
 Identities = 103/454 (22%), Positives = 188/454 (41%)

Query:   260 RHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGS-KKLKYPLSTLL 318
             +HH +VF FQ           + T  QL + +H     L S  +T G  K L    +  L
Sbjct:    88 KHH-NVFSFQ---------FCVDTQIQLLKNVH-----LFSLDATHGLVKSLNGQSNAYL 132

Query:   319 -----VFDSSHNAIPVAWIITSSFVGQF-VHKWIGLLAERIRTKDPRWRLSAFLVDNPSF 372
                  +  SS N  P+++++T+ + G+  +  W+  L       +P    + F++D    
Sbjct:   133 FVLTGIIPSSRNTFPLSFMLTN-YTGKITIQHWLNNLKTEFGI-NP----TQFVIDADPA 186

Query:   373 DISTIRENFQ-CRILLCVWHVRRAW---IKNLL---KKCYNVEVQQEMFKQLSWILYSSR 425
             +IS I+  F+  +I+LC +HV RA    +K ++    K     +   + + L  IL++S 
Sbjct:   187 EISGIQSIFKDTKIVLCYFHVLRAVTIKLKEVVILPDKEQQKAIHDSITQDLKRILFNSE 246

Query:   426 SSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWV-TGIRSLPVTTPEPLAAIETYH 484
             ++ N    I++F++ +     F  YF+ QW+  I +W+ T   +  +         E + 
Sbjct:   247 NTEND---IQKFLEKYASFRRFKSYFQKQWMSKINMWLRTENNTFDILLLTNNLT-ENFF 302

Query:   485 LRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFE-NLRDDSFSTNAW 543
               LK+ +   Q  N   R+D L++ L       +W  ++ + TG  + N R    S    
Sbjct:   303 SVLKTVILKNQP-N--KRLDSLVYVLVEIVIPRFWRKEFKVITGDEKPNTRGPEVSQKKQ 359

Query:   544 SQALHIPDVN--VMLDEQNLQLAKIISQADRT-LAYTI-WNPGSEFSLCDCPWSRLGNVC 599
                L   ++   V L+  N     ++    R+ ++Y +  N  ++   C C    +   C
Sbjct:   360 LDILEDEEIKELVKLNIINNSELFVVQSPHRSEMSYNVELNYQNKTGQCSCEMFTIEE-C 418

Query:   600 EHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKG- 658
               +  LA+    R +    +    YR+ +    QN     L +E   +   ++   +   
Sbjct:   419 SCIHTLAVY---RYIN---IHKNFYREKIRGSPQNAIPLCLRIEMFPLVGQKIGAYVAEE 472

Query:   659 -LEELSNSGLLQPLPLEV-NPHMALNHQLFPRLP 690
              LEEL   G L+    E+ N   A N  L   LP
Sbjct:   473 LLEELDEEGELETSVSEIMNQLAASNESLEGCLP 506

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AAE4 CaO19.7545 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 149 (57.5 bits), Expect = 8.2e-07, P = 8.2e-07
 Identities = 103/454 (22%), Positives = 188/454 (41%)

Query:   260 RHHKHVFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGS-KKLKYPLSTLL 318
             +HH +VF FQ           + T  QL + +H     L S  +T G  K L    +  L
Sbjct:    88 KHH-NVFSFQ---------FCVDTQIQLLKNVH-----LFSLDATHGLVKSLNGQSNAYL 132

Query:   319 -----VFDSSHNAIPVAWIITSSFVGQF-VHKWIGLLAERIRTKDPRWRLSAFLVDNPSF 372
                  +  SS N  P+++++T+ + G+  +  W+  L       +P    + F++D    
Sbjct:   133 FVLTGIIPSSRNTFPLSFMLTN-YTGKITIQHWLNNLKTEFGI-NP----TQFVIDADPA 186

Query:   373 DISTIRENFQ-CRILLCVWHVRRAW---IKNLL---KKCYNVEVQQEMFKQLSWILYSSR 425
             +IS I+  F+  +I+LC +HV RA    +K ++    K     +   + + L  IL++S 
Sbjct:   187 EISGIQSIFKDTKIVLCYFHVLRAVTIKLKEVVILPDKEQQKAIHDSITQDLKRILFNSE 246

Query:   426 SSPNSVDTIEEFMQVFVDQCAFMDYFKSQWLPHIELWV-TGIRSLPVTTPEPLAAIETYH 484
             ++ N    I++F++ +     F  YF+ QW+  I +W+ T   +  +         E + 
Sbjct:   247 NTEND---IQKFLEKYASFRRFKSYFQKQWMSKINMWLRTENNTFDILLLTNNLT-ENFF 302

Query:   485 LRLKSKLFHEQNVNFWPRVDWLIHTLTTEFHSLYWLDQYSMETGYFE-NLRDDSFSTNAW 543
               LK+ +   Q  N   R+D L++ L       +W  ++ + TG  + N R    S    
Sbjct:   303 SVLKTVILKNQP-N--KRLDSLVYVLVEIVIPRFWRKEFKVITGDEKPNTRGPEVSQKKQ 359

Query:   544 SQALHIPDVN--VMLDEQNLQLAKIISQADRT-LAYTI-WNPGSEFSLCDCPWSRLGNVC 599
                L   ++   V L+  N     ++    R+ ++Y +  N  ++   C C    +   C
Sbjct:   360 LDILEDEEIKELVKLNIINNSELFVVQSPHRSEMSYNVELNYQNKTGQCSCEMFTIEE-C 418

Query:   600 EHVIKLAMVCKSRQVARPLLAAQVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQDIKG- 658
               +  LA+    R +    +    YR+ +    QN     L +E   +   ++   +   
Sbjct:   419 SCIHTLAVY---RYIN---IHKNFYREKIRGSPQNAIPLCLRIEMFPLVGQKIGAYVAEE 472

Query:   659 -LEELSNSGLLQPLPLEV-NPHMALNHQLFPRLP 690
              LEEL   G L+    E+ N   A N  L   LP
Sbjct:   473 LLEELDEEGELETSVSEIMNQLAASNESLEGCLP 506


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      690       690   0.00080  121 3  11 22  0.49    33
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  632 (67 KB)
  Total size of DFA:  434 KB (2206 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  63.57u 0.17s 63.74t   Elapsed:  00:00:03
  Total cpu time:  63.57u 0.17s 63.74t   Elapsed:  00:00:03
  Start:  Sat May 11 04:40:45 2013   End:  Sat May 11 04:40:48 2013

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	690
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.75
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.36
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.5
COG3328	379	Transposase and inactivated derivatives [DNA repli	98.26
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	97.65
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.03
PF15299	225	ALS2CR8: Amyotrophic lateral sclerosis 2 chromosom	95.81
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	95.38
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.76
PF13610	140	DDE_Tnp_IS240: DDE domain	88.36
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	88.23
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	85.12
COG4279	266	Uncharacterized conserved protein [Function unknow	80.47

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=4.4e-60  Score=548.11  Aligned_cols=501  Identities=13%  Similarity=0.155  Sum_probs=371.9

Q ss_pred             ccccCCCCCcccccccceeeEEEEeeecCCCccccCCCCCCCCCCcc-----cCC-CC---------------------C
Q 039513           69 SRRKRSEGSISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVK-----PAT-GK---------------------G  121 (690)
Q Consensus        69 ~~~~~~~g~~~~~~~d~~~~~~~y~Cs~g~~~~~~~~~~~~~~g~~~-----p~~-~~---------------------~  121 (690)
                      ..-.|.+||+|.+.++++.||+.|+...||...+++++..+..|.+.     +++ |.                     .
T Consensus        70 ~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~  149 (846)
T PLN03097         70 TNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPEN  149 (846)
T ss_pred             CCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCccc
Confidence            34579999999999999999999999999987654432111112110     111 10                     0


Q ss_pred             CCCCCCccccCcceEEEEEEeeeCCcEEEEEE-eccCCCCCCCCCCCCCCcccccccccccCCCCCHHHHHHHHHHHHcC
Q 039513          122 SRPGRRHMMRGCLCHFTVKRLYTRPLLALIIY-NQRKHVDKTGAPCHGILDRDAVGTRAMYAPRISEDLRQKVMSMLYVG  200 (690)
Q Consensus       122 ~r~~r~~tk~gC~a~~~vk~~~~~~~~~v~~~-~eHnH~~~~~~~~h~~~~~~~~g~~~~~~~~is~~~r~~i~~ll~~G  200 (690)
                      .+++|..+|+||+|+|.|++ ..+++|.|..+ .+|||++..+       +            .++...+          
T Consensus       150 ~~~rR~~tRtGC~A~m~Vk~-~~~gkW~V~~fv~eHNH~L~p~-------~------------~~~~~~r----------  199 (846)
T PLN03097        150 GTGRRSCAKTDCKASMHVKR-RPDGKWVIHSFVKEHNHELLPA-------Q------------AVSEQTR----------  199 (846)
T ss_pred             ccccccccCCCCceEEEEEE-cCCCeEEEEEEecCCCCCCCCc-------c------------ccchhhh----------
Confidence            01235678999999999997 46778988887 8999965521       1            1121111          


Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCCCCcCcHHHHHHHHHHHhhccccccCChHHHHHHHHHhhc--CceeEEEeccCCCC-e
Q 039513          201 ISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIRNSSHELHVDDECSVKMWVQRHH--KHVFFFQDYSVSEP-F  277 (690)
Q Consensus       201 i~~~~Il~~~~~~~~~~~g~~~r~~~~t~~Di~Ni~~~~~~~~~~l~~~D~~Sv~~~v~~~~--~~vf~y~~~~d~~~-f  277 (690)
                          .|+..+...+   ++.  +....+..|.+|..++.++  ..+..+|+..+..+++++|  +|.|||.-+.|+++ .
T Consensus       200 ----~~~~~~~~~~---~~~--~~v~~~~~d~~~~~~~~r~--~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l  268 (846)
T PLN03097        200 ----KMYAAMARQF---AEY--KNVVGLKNDSKSSFDKGRN--LGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRL  268 (846)
T ss_pred             ----hhHHHHHhhh---hcc--ccccccchhhcchhhHHHh--hhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCe
Confidence                2222222211   121  2234456677776655543  4566899999999999986  89999998776665 4


Q ss_pred             EEEecCHHH-HHHHHhhCCCcEEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhcc
Q 039513          278 ILVIQTDWQ-LQQMLHYGNNGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTK  356 (690)
Q Consensus       278 ~l~i~t~~q-~~~l~~fg~~~vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~  356 (690)
                      .-+||++.. +..+..||+  ||+||+||.||+|++||.+|+|+|+||+++++||+|+.+|+.++|.|+|++|+.+|++ 
T Consensus       269 ~niFWaD~~sr~~Y~~FGD--vV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~g-  345 (846)
T PLN03097        269 KNLFWVDAKSRHDYGNFSD--VVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGG-  345 (846)
T ss_pred             eeEEeccHHHHHHHHhcCC--EEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCC-
Confidence            457777765 556899999  9999999999999999999999999999999999999999999999999999999964 


Q ss_pred             CCCcceeEEEecCChhHHHHHHHhCc-cceeechhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhccCCCCchHHHHH
Q 039513          357 DPRWRLSAFLVDNPSFDISTIRENFQ-CRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIE  435 (690)
Q Consensus       357 ~p~~~P~~~mtD~d~a~~~AI~~vFp-~~~llC~wHV~qaw~k~l~~~~~~~e~~~~i~~~l~~lv~~~~~~~~~~~~~e  435 (690)
                         ..|++||||+|.|+.+||++||| +.|++|.|||+++..++|...+.   ....+...|..||+.+.++++|+..|.
T Consensus       346 ---k~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~---~~~~f~~~f~~cv~~s~t~eEFE~~W~  419 (846)
T PLN03097        346 ---QAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIK---QHENFMAKFEKCIYRSWTEEEFGKRWW  419 (846)
T ss_pred             ---CCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhh---hhhHHHHHHHHHHhCCCCHHHHHHHHH
Confidence               47999999999999999999999 79999999999999999976442   235688899999999988888999999


Q ss_pred             HHHHHhhchhHHHHHHHhhhhhhHHHHhhhc-cccCCCCCCCCchHHHHHHHhhhhhccccCC-CccccHHHHHHHHhh-
Q 039513          436 EFMQVFVDQCAFMDYFKSQWLPHIELWVTGI-RSLPVTTPEPLAAIETYHLRLKSKLFHEQNV-NFWPRVDWLIHTLTT-  512 (690)
Q Consensus       436 ~~~~~~~~~~~f~~Yf~~~Wl~~~~~Wa~~y-r~~~~~g~~Tnn~~Es~h~~LK~~~l~~~~~-~~~~rvD~lv~~L~~-  512 (690)
                      .++++|....  .+|+...| ..+++||++| +..+++|+.||+++||+|+.||.++-....+ .|..++|.++..... 
T Consensus       420 ~mi~ky~L~~--n~WL~~LY-~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ek  496 (846)
T PLN03097        420 KILDRFELKE--DEWMQSLY-EDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEE  496 (846)
T ss_pred             HHHHhhcccc--cHHHHHHH-HhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Confidence            9999986432  36788887 4579999999 7788999999999999999999854333333 467778877775432 


Q ss_pred             h----hhhh---------hhHHhhhc---cccchHhhhhhhcccchhHhHhccCCceEEeccCcceeEEEeeccCCceeE
Q 039513          513 E----FHSL---------YWLDQYSM---ETGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQLAKIISQADRTLAY  576 (690)
Q Consensus       513 ~----v~s~---------y~l~~~s~---~~~~f~~~q~e~~~~~s~~~a~~i~~~~V~~~~~~~~~~~V~S~~~~~~~~  576 (690)
                      +    +.+.         +-++..+.   +..+|+.||+|+.....    +.+  ..+ .++.....+.|........+.
T Consensus       497 E~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~----~~~--~~~-~~dg~~~~y~V~~~~~~~~~~  569 (846)
T PLN03097        497 EAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVA----CHP--KME-SQDETSITFRVQDFEKNQDFT  569 (846)
T ss_pred             HHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhh----eEE--eee-ccCCceEEEEEEEecCCCcEE
Confidence            1    2111         11222221   35678999999875221    111  111 112223456787765555566


Q ss_pred             EEeCCCCCeeeeecCCCC-CCccchhHHHHHHhhhccccCCChhhHHHHHHHHHh
Q 039513          577 TIWNPGSEFSLCDCPWSR-LGNVCEHVIKLAMVCKSRQVARPLLAAQVYRQALLS  630 (690)
Q Consensus       577 vV~n~~~~~~~CsC~~f~-~G~lCkHil~Vl~~~~~~~~~~p~~~~~~~~~~~~~  630 (690)
                      |+||......+|+|+.|+ .|+||+|||+||.+.+.... ||.+.+.+|++....
T Consensus       570 V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~I-P~~YILkRWTKdAK~  623 (846)
T PLN03097        570 VTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAI-PSQYILKRWTKDAKS  623 (846)
T ss_pred             EEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccC-chhhhhhhchhhhhh
Confidence            669999999999999999 99999999999999888765 889999999877764

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.75  E-value=3.4e-18  Score=149.70  Aligned_cols=89  Identities=25%  Similarity=0.332  Sum_probs=81.1

Q ss_pred             ecccccccCCceEE---EEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHHHHHH
Q 039513          303 STFGSKKLKYPLST---LLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRE  379 (690)
Q Consensus       303 sT~~tn~~~~pL~~---~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~AI~~  379 (690)
                      +||+||+| .|+++   ++++|++|+++|+||+++++|+.++|.++|+.+++.+.    .. |.+||||.+.++++||++
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~----~~-p~~ii~D~~~~~~~Ai~~   74 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMP----QK-PKVIISDFDKALINAIKE   74 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccc----cC-ceeeeccccHHHHHHHHH
Confidence            69999999 87775   99999999999999999999999999998887776664    34 999999999999999999


Q ss_pred             hCc-cceeechhhHHHHHH
Q 039513          380 NFQ-CRILLCVWHVRRAWI  397 (690)
Q Consensus       380 vFp-~~~llC~wHV~qaw~  397 (690)
                      +|| +.|++|.||+.|+|+
T Consensus        75 vfP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   75 VFPDARHQLCLFHILRNIK   93 (93)
T ss_pred             HCCCceEehhHHHHHHhhC
Confidence            999 799999999999873

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.36  E-value=1.2e-13  Score=151.61  Aligned_cols=245  Identities=15%  Similarity=0.197  Sum_probs=172.1

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhcCCCCCCCCCcCcHHHHHHHHHHHhhccccccCChHHHHHHHHHhhcCc
Q 039513          185 ISEDLRQKVMSMLYVGISLDNIIQHHIEAVQGHGGPHNRDDFLTRNDVRNMERVIRNSSHELHVDDECSVKMWVQRHHKH  264 (690)
Q Consensus       185 is~~~r~~i~~ll~~Gi~~~~Il~~~~~~~~~~~g~~~r~~~~t~~Di~Ni~~~~~~~~~~l~~~D~~Sv~~~v~~~~~~  264 (690)
                      .+++.-+.|.+|-..|+|..+|-..+.+.    +|+.    .+...-|.++...+.           ..+..|-.+    
T Consensus        99 ~~~~l~~~i~~ly~~G~Str~i~~~l~~l----~g~~----~~S~s~vSri~~~~~-----------~~~~~w~~R----  155 (381)
T PF00872_consen   99 REDSLEELIISLYLKGVSTRDIEEALEEL----YGEV----AVSKSTVSRITKQLD-----------EEVEAWRNR----  155 (381)
T ss_pred             hhhhhhhhhhhhhccccccccccchhhhh----hccc----ccCchhhhhhhhhhh-----------hhHHHHhhh----
Confidence            36677888999999999999998776553    3411    245556666544433           123333322    


Q ss_pred             eeEEEeccCCCCeEEEecCHHHHHHHHhhCCCcEEEEeecccccc-----cCCceEEEEEEcCCCCeeEEEEEEeeccch
Q 039513          265 VFFFQDYSVSEPFILVIQTDWQLQQMLHYGNNGLMSFHSTFGSKK-----LKYPLSTLLVFDSSHNAIPVAWIITSSFVG  339 (690)
Q Consensus       265 vf~y~~~~d~~~f~l~i~t~~q~~~l~~fg~~~vv~~DsT~~tn~-----~~~pL~~~~v~d~~g~~~pva~~i~~~et~  339 (690)
                                              -+.... -.+|++|+||-.-+     -+-.+++++|+|..|+-.++|+.+...|+.
T Consensus       156 ------------------------~L~~~~-y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~  210 (381)
T PF00872_consen  156 ------------------------PLESEP-YPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESA  210 (381)
T ss_pred             ------------------------cccccc-ccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCcc
Confidence                                    221110 01799999996544     246789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHHHHHHhCc-cceeechhhHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039513          340 QFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIRENFQ-CRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLS  418 (690)
Q Consensus       340 ~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~AI~~vFp-~~~llC~wHV~qaw~k~l~~~~~~~e~~~~i~~~l~  418 (690)
                      ..+..+|..+.++     +-..|..|++|...++.+||+++|| +.++.|.+|..+++.+++.+     ..+..+...|+
T Consensus       211 ~~W~~~l~~L~~R-----Gl~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~-----k~~~~v~~~Lk  280 (381)
T PF00872_consen  211 ASWREFLQDLKER-----GLKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPK-----KDRKEVKADLK  280 (381)
T ss_pred             CEeeecchhhhhc-----cccccceeeccccccccccccccccchhhhhheechhhhhcccccc-----ccchhhhhhcc
Confidence            8876666555443     2225899999999999999999999 79999999999988777644     24567778888


Q ss_pred             HHHhccCCCCchHHHHHHHHHHhhc-hhHHHHHHHhhhhhhHHHHhhhccccCCCCCCCCchHHHHHHHhhhh
Q 039513          419 WILYSSRSSPNSVDTIEEFMQVFVD-QCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSK  490 (690)
Q Consensus       419 ~lv~~~~~~~~~~~~~e~~~~~~~~-~~~f~~Yf~~~Wl~~~~~Wa~~yr~~~~~g~~Tnn~~Es~h~~LK~~  490 (690)
                      .+.+..+. +.....+++|.+.|.+ .+.+.++++..|......|.  |.......+.|||.+||+|+.||+.
T Consensus       281 ~I~~a~~~-e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~~tf~~--fP~~~~~~i~TTN~iEsln~~irrr  350 (381)
T PF00872_consen  281 AIYQAPDK-EEAREALEEFAEKWEKKYPKAAKSLEENWDELLTFLD--FPPEHRRSIRTTNAIESLNKEIRRR  350 (381)
T ss_pred             cccccccc-chhhhhhhhcccccccccchhhhhhhhccccccceee--ecchhccccchhhhccccccchhhh
Confidence            77555433 3467778888887764 57888888887743221111  1111123568999999999999984

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.50  E-value=2.2e-07  Score=80.87  Aligned_cols=71  Identities=20%  Similarity=0.277  Sum_probs=51.1

Q ss_pred             CcccccccceeeEEEEeeecCCCccccCCCCCCCCCCcccCCCCCCCCCCCccccCcceEEEEEEeeeCCcEEEEEE-ec
Q 039513           77 SISKPRVDGYLEYTLYWCSYGPEDYRDSESGNGDGSNVKPATGKGSRPGRRHMMRGCLCHFTVKRLYTRPLLALIIY-NQ  155 (690)
Q Consensus        77 ~~~~~~~d~~~~~~~y~Cs~g~~~~~~~~~~~~~~g~~~p~~~~~~r~~r~~tk~gC~a~~~vk~~~~~~~~~v~~~-~e  155 (690)
                      .+.+++.++.+.+..|+|++++....+.+            ...+.++.++++++||+|+|.|++.. ++.|.|..+ .+
T Consensus        18 ~s~~~~~~~~~~~~~~~C~r~G~~~~~~~------------~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~~~~~~   84 (91)
T PF03101_consen   18 SSRKSKKNGEIKRVTFVCSRGGKYKSKKK------------NEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVTSFVLE   84 (91)
T ss_pred             eeEeCCCCceEEEEEEEECCccccccccc------------ccccccccccccccCCCEEEEEEEcc-CCEEEEEECcCC
Confidence            34445678889999999999753221110            01234456799999999999999865 788888877 89


Q ss_pred             cCCCC
Q 039513          156 RKHVD  160 (690)
Q Consensus       156 HnH~~  160 (690)
                      |||++
T Consensus        85 HNH~L   89 (91)
T PF03101_consen   85 HNHPL   89 (91)
T ss_pred             cCCCC
Confidence            99954

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=98.26  E-value=3.6e-05  Score=83.79  Aligned_cols=180  Identities=12%  Similarity=0.143  Sum_probs=122.9

Q ss_pred             CCCcEEEEeecccccc--cCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCCh
Q 039513          294 GNNGLMSFHSTFGSKK--LKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPS  371 (690)
Q Consensus       294 g~~~vv~~DsT~~tn~--~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~  371 (690)
                      |+..++++|++|.--+  -+-.++..+|++..|+--.+|+.+...|+ .-+..||..+..+-.     -....+++|.-+
T Consensus       143 ~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl-----~~v~l~v~Dg~~  216 (379)
T COG3328         143 GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGL-----SDVLLVVVDGLK  216 (379)
T ss_pred             cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhccc-----cceeEEecchhh
Confidence            3444899999997666  34578889999999999999999999999 555556665554411     124556779999


Q ss_pred             hHHHHHHHhCc-cceeechhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhc-hhHHHH
Q 039513          372 FDISTIRENFQ-CRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVD-QCAFMD  449 (690)
Q Consensus       372 a~~~AI~~vFp-~~~llC~wHV~qaw~k~l~~~~~~~e~~~~i~~~l~~lv~~~~~~~~~~~~~e~~~~~~~~-~~~f~~  449 (690)
                      ..-+||.++|| +.+..|..|+.++....+..     +.+..+...+..+ +.....+.....|.++.+.|.. .+....
T Consensus       217 gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~-----k~~d~i~~~~~~I-~~a~~~e~~~~~~~~~~~~w~~~yP~i~~  290 (379)
T COG3328         217 GLPEAISAVFPQAAVQRCIVHLVRNLLDKVPR-----KDQDAVLSDLRSI-YIAPDAEEALLALLAFSELWGKRYPAILK  290 (379)
T ss_pred             hhHHHHHHhccHhhhhhhhhHHHhhhhhhhhh-----hhhHHHHhhhhhh-hccCCcHHHHHHHHHHHHhhhhhcchHHH
Confidence            99999999999 89999999999876665543     3455666666555 3333333355567777766653 344444


Q ss_pred             HHHhhhhhhHHHHhhhccccCC---CCCCCCchHHHHHHHhhhh
Q 039513          450 YFKSQWLPHIELWVTGIRSLPV---TTPEPLAAIETYHLRLKSK  490 (690)
Q Consensus       450 Yf~~~Wl~~~~~Wa~~yr~~~~---~g~~Tnn~~Es~h~~LK~~  490 (690)
                      ...+.|..   .|.  |-.+|-   --+.|||.+|++|+.++..
T Consensus       291 ~~~~~~~~---~~~--F~~fp~~~r~~i~ttN~IE~~n~~ir~~  329 (379)
T COG3328         291 SWRNALEE---LLP--FFAFPSEIRKIIYTTNAIESLNKLIRRR  329 (379)
T ss_pred             HHHHHHHH---hcc--cccCcHHHHhHhhcchHHHHHHHHHHHH
Confidence            44545532   221  111222   1368999999999988764

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=97.65  E-value=2.7e-05  Score=52.39  Aligned_cols=25  Identities=24%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             eeecCCCC-CCccchhHHHHHHhhhc
Q 039513          587 LCDCPWSR-LGNVCEHVIKLAMVCKS  611 (690)
Q Consensus       587 ~CsC~~f~-~G~lCkHil~Vl~~~~~  611 (690)
                      +|+|+.|+ .|+||+|+++|+...+.
T Consensus         2 ~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        2 TCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             cccCCCcccCCccHHHHHHHHHHhCC
Confidence            69999998 99999999999987653

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.03  E-value=0.0007  Score=49.47  Aligned_cols=26  Identities=27%  Similarity=0.809  Sum_probs=22.8

Q ss_pred             CCeeeeecCCCC-CCccchhHHHHHHh
Q 039513          583 SEFSLCDCPWSR-LGNVCEHVIKLAMV  608 (690)
Q Consensus       583 ~~~~~CsC~~f~-~G~lCkHil~Vl~~  608 (690)
                      ....+|+|+.|+ .|.+|+|+++|+..
T Consensus        12 ~~~~~CsC~~~~~~~~~CkHi~av~~~   38 (40)
T PF04434_consen   12 IEQASCSCPYFQFRGGPCKHIVAVLLA   38 (40)
T ss_pred             ccccEeeCCCccccCCcchhHHHHHHh
Confidence            456689999998 99999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF15299 ALS2CR8: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

Probab=95.81  E-value=0.13  Score=52.70  Aligned_cols=59  Identities=20%  Similarity=0.302  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHhhhc-------CCCCCCCCCcCcHHHHHHHHHHHh
Q 039513          182 APRISEDLRQKVMSMLYVGISL-DNIIQHHIEAVQG-------HGGPHNRDDFLTRNDVRNMERVIR  240 (690)
Q Consensus       182 ~~~is~~~r~~i~~ll~~Gi~~-~~Il~~~~~~~~~-------~~g~~~r~~~~t~~Di~Ni~~~~~  240 (690)
                      ...+.+++.+.|.+|+..|++. .+|.+.++..+..       ..-..++...+|.+||+|......
T Consensus       155 ~q~~~~~v~~ki~eLv~~gv~~v~e~k~~l~~fV~~~lf~~~~~p~~~n~~y~Pt~~di~n~~~~~~  221 (225)
T PF15299_consen  155 KQPLDPRVVEKIHELVAQGVTSVPEMKRHLKKFVEEELFKDQEPPPPTNRRYFPTDKDIRNHMYSAK  221 (225)
T ss_pred             cccCCHHHHHHHHHHHHcccccHHHHHHHHHHHhhhhccCCCCCCCCCccccCCchHHHHHHHHHHH
Confidence            3467899999999999999875 5666666443321       112346667899999999876654

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=95.38  E-value=0.07  Score=47.69  Aligned_cols=30  Identities=13%  Similarity=0.227  Sum_probs=19.5

Q ss_pred             ccCcceEEEEEEeeeCCcEEEEEE-eccCCC
Q 039513          130 MRGCLCHFTVKRLYTRPLLALIIY-NQRKHV  159 (690)
Q Consensus       130 k~gC~a~~~vk~~~~~~~~~v~~~-~eHnH~  159 (690)
                      +.+||.+|+..-......|.+++. +.|||+
T Consensus        80 k~~CPFriRA~yS~k~k~W~lvvvnn~HnH~  110 (111)
T PF08731_consen   80 KNTCPFRIRANYSKKNKKWTLVVVNNEHNHP  110 (111)
T ss_pred             ccCCCeEEEEEEEecCCeEEEEEecCCcCCC
Confidence            455555544443345666888888 799995

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=94.76  E-value=0.049  Score=56.25  Aligned_cols=94  Identities=17%  Similarity=0.079  Sum_probs=64.3

Q ss_pred             EEeecccccccCCceEEEEEEcCCC-CeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHHHHH
Q 039513          300 SFHSTFGSKKLKYPLSTLLVFDSSH-NAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTIR  378 (690)
Q Consensus       300 ~~DsT~~tn~~~~pL~~~~v~d~~g-~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~AI~  378 (690)
                      +||=+.....+..  |..+++|... .+-++  .++.+-+.+++..||..++   ... ....+++|.+|-..+...|++
T Consensus         2 giDE~~~~~g~~~--y~t~~~d~~~~~~~il--~i~~~r~~~~l~~~~~~~~---~~~-~~~~v~~V~~Dm~~~y~~~~~   73 (249)
T PF01610_consen    2 GIDEFAFRKGHRS--YVTVVVDLDTDTGRIL--DILPGRDKETLKDFFRSLY---PEE-ERKNVKVVSMDMSPPYRSAIR   73 (249)
T ss_pred             eEeeeeeecCCcc--eeEEEEECccCCceEE--EEcCCccHHHHHHHHHHhC---ccc-cccceEEEEcCCCcccccccc
Confidence            4555554443432  4555666522 23333  3777888888877776541   111 123689999999999999999


Q ss_pred             HhCc-cceeechhhHHHHHHHHHH
Q 039513          379 ENFQ-CRILLCVWHVRRAWIKNLL  401 (690)
Q Consensus       379 ~vFp-~~~llC~wHV~qaw~k~l~  401 (690)
                      +.|| +.+.+-.|||+|...+.+.
T Consensus        74 ~~~P~A~iv~DrFHvvk~~~~al~   97 (249)
T PF01610_consen   74 EYFPNAQIVADRFHVVKLANRALD   97 (249)
T ss_pred             ccccccccccccchhhhhhhhcch
Confidence            9999 7999999999998766543

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=88.36  E-value=0.15  Score=47.98  Aligned_cols=77  Identities=9%  Similarity=-0.035  Sum_probs=57.2

Q ss_pred             EEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHHHH
Q 039513          298 LMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDISTI  377 (690)
Q Consensus       298 vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~AI  377 (690)
                      .+.+|-||-.- -|---|..-++|..|+  .+.+.+...-+...-..+|+.++...    + -.|..|+||+..+...|+
T Consensus         3 ~w~~DEt~iki-~G~~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~----~-~~p~~ivtDk~~aY~~A~   74 (140)
T PF13610_consen    3 SWHVDETYIKI-KGKWHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRH----R-GEPRVIVTDKLPAYPAAI   74 (140)
T ss_pred             EEEEeeEEEEE-CCEEEEEEEeeccccc--chhhhhhhhcccccceeeccccceee----c-cccceeecccCCccchhh
Confidence            79999999432 2334566778899888  68888888777776556665444433    1 369999999999999999


Q ss_pred             HHhCc
Q 039513          378 RENFQ  382 (690)
Q Consensus       378 ~~vFp  382 (690)
                      ++.++
T Consensus        75 ~~l~~   79 (140)
T PF13610_consen   75 KELNP   79 (140)
T ss_pred             hhccc
Confidence            98777

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=88.23  E-value=53  Score=37.49  Aligned_cols=132  Identities=14%  Similarity=0.103  Sum_probs=73.4

Q ss_pred             HHHHHHHhccCCCcce--eEEEecCChhHHHHHHHhCc-cceeechhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 039513          347 GLLAERIRTKDPRWRL--SAFLVDNPSFDISTIRENFQ-CRILLCVWHVRRAWIKNLLKKCYNVEVQQEMFKQLSWILYS  423 (690)
Q Consensus       347 ~~l~~~~~~~~p~~~P--~~~mtD~d~a~~~AI~~vFp-~~~llC~wHV~qaw~k~l~~~~~~~e~~~~i~~~l~~lv~~  423 (690)
                      ..+.+.+...+..-..  -++..|...=..++. +.|| +.+.|..||+.|++.+.+..   .++.+..+++.|.    .
T Consensus       242 ~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~-~~~~~~~~~LD~FHl~k~i~~~~~~---~~~~~~~~~~al~----~  313 (470)
T PF06782_consen  242 EEVLDYIYNHYDLDKTTKIIINGDGASWIKEGA-EFFPKAEYFLDRFHLNKKIKQALSH---DPELKEKIRKALK----K  313 (470)
T ss_pred             HHHHHHHHHhcCcccceEEEEeCCCcHHHHHHH-HhhcCceEEecHHHHHHHHHHHhhh---ChHHHHHHHHHHH----h
Confidence            3445555444321112  234567776555544 5888 79999999999999887753   2334444544443    2


Q ss_pred             cCCCCchHHHHHHHHHHhhc------hhHHHHHHHhhhhhhHHHHhhhccccCCCCCCCCchHHHHHHHhhhhhccc
Q 039513          424 SRSSPNSVDTIEEFMQVFVD------QCAFMDYFKSQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHE  494 (690)
Q Consensus       424 ~~~~~~~~~~~e~~~~~~~~------~~~f~~Yf~~~Wl~~~~~Wa~~yr~~~~~g~~Tnn~~Es~h~~LK~~~l~~  494 (690)
                      ... ..+...++.+.....+      -.++..|+.++|-.-     ..|+.-  .|.......|+.|+.|...+-.+
T Consensus       314 ~d~-~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~~~i-----~~y~~~--~~~~g~g~ee~~~~~~s~RmK~r  382 (470)
T PF06782_consen  314 GDK-KKLETVLDTAESCAKDEEERKKIRKLRKYLLNNWDGI-----KPYRER--EGLRGIGAEESVSHVLSYRMKSR  382 (470)
T ss_pred             cCH-HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCHHHh-----hhhhhc--cCCCccchhhhhhhHHHHHhcCC
Confidence            211 1233334444322211      246789999999532     234320  23344456899999987765443

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=85.12  E-value=7.5  Score=34.56  Aligned_cols=75  Identities=13%  Similarity=-0.054  Sum_probs=51.0

Q ss_pred             cEEEEeecccc-cccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHH
Q 039513          297 GLMSFHSTFGS-KKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIS  375 (690)
Q Consensus       297 ~vv~~DsT~~t-n~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~  375 (690)
                      ..+++|.++-. ...+-..+.++++|.+-+ ...++.+...++.+.+...|...+...+    +..|+.|.||...+..+
T Consensus         7 ~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~p~~i~tD~g~~f~~   81 (120)
T PF00665_consen    7 ERWQIDFTPMPIPDKGGRVYLLVFIDDYSR-FIYAFPVSSKETAEAALRALKRAIEKRG----GRPPRVIRTDNGSEFTS   81 (120)
T ss_dssp             TEEEEEEEEETGGCTT-CEEEEEEEETTTT-EEEEEEESSSSHHHHHHHHHHHHHHHHS-----SE-SEEEEESCHHHHS
T ss_pred             CEEEEeeEEEecCCCCccEEEEEEEECCCC-cEEEEEeecccccccccccccccccccc----cccceeccccccccccc
Confidence            38999999433 223347888999998644 4567778777788777666665555543    22399999999998774


Q ss_pred             H
Q 039513          376 T  376 (690)
Q Consensus       376 A  376 (690)
                      .
T Consensus        82 ~   82 (120)
T PF00665_consen   82 H   82 (120)
T ss_dssp             H
T ss_pred             c
Confidence            3

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>COG4279 Uncharacterized conserved protein [Function unknown]

Probab=80.47  E-value=0.84  Score=46.51  Aligned_cols=45  Identities=27%  Similarity=0.603  Sum_probs=33.2

Q ss_pred             eeeecCCCCCCccchhHHHHHHhhhccccCCChhhHHHH---HHHHHhhh
Q 039513          586 SLCDCPWSRLGNVCEHVIKLAMVCKSRQVARPLLAAQVY---RQALLSLL  632 (690)
Q Consensus       586 ~~CsC~~f~~G~lCkHil~Vl~~~~~~~~~~p~~~~~~~---~~~~~~~~  632 (690)
                      .-|||+  ...+|||||.+|+=+-+.....-|.+.+.=.   +..|...+
T Consensus       125 ~dCSCP--D~anPCKHi~AvyY~lae~f~~dPflif~lRG~~k~eL~a~l  172 (266)
T COG4279         125 TDCSCP--DYANPCKHIAAVYYLLAEKFDEDPFLIFKLRGRNKEELLALL  172 (266)
T ss_pred             cccCCC--CcccchHHHHHHHHHHHHHhccCCeeeeeecCCCHHHHHHHH
Confidence            369998  5679999999999998888777777765433   44454444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	690
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 9e-06
 Identities = 68/584 (11%), Positives = 163/584 (27%), Gaps = 145/584 (24%)

Query: 208 QHHIE---AVQGHGG----PHNRDDFLTRNDVRNMERVIRN--SSHELHVDDECSVKMWV 258
            HH++       +          D F+   D ++++ + ++  S  E  +D     K  V
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE--IDHIIMSKDAV 61

Query: 259 QRHHKHVFFFQDY--SVSEPFI-LVIQTDWQ-LQQMLHYGNNGLMSFHSTFGSKK----- 309
               +  +        + + F+  V++ +++ L   +             +  ++     
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 310 -----LKYPLSTLLVFDSSHNAI----PVAWIITSSFVGQFVH------KWIGLLAERIR 354
                 KY +S L  +     A+    P   ++        +       K   +  +   
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--------IDGVLGSGKTW-VALDVCL 172

Query: 355 TKDPR--------WRLSAFLVDNPSFDISTIRENFQCRILLCVWHVRRAWIKNLLKKCYN 406
           +   +        W L+    ++P   +  + +      +   W  R            N
Sbjct: 173 SYKVQCKMDFKIFW-LNLKNCNSPE-TVLEMLQKL-LYQIDPNWTSR-------SDHSSN 222

Query: 407 VEVQQEMFKQLSWILYSSRSSPNS---VDTI--EEFMQVFVDQC---------AFMDYFK 452
           ++++    +     L  S+   N    +  +   +    F   C            D+  
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 453 SQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRLKSKLFHEQNVNFWPRVDWLIHTLTT 512
           +    HI L      S+ +T  E  + +  Y L  + +    + +   PR   +I     
Sbjct: 283 AATTTHISL---DHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 513 EFHSL--YWL----DQYS--METGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQLA 564
           +  +    W     D+ +  +E+     L    +       ++  P  ++      L L 
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHIP--TILLSL- 394

Query: 565 KIISQADRTLAYTIWNPGSE------------FSLCDCPWSRLGNVCEHVIKLAMVCKSR 612
                        IW    +            +SL +    +   +    I L +  K  
Sbjct: 395 -------------IWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLE 440

Query: 613 QVA---RPLLAA-QVYRQALLSLLQNPPDDPLVLEYAIVHATRLQQ------------DI 656
                 R ++    + +      L  P  D     +   H   ++             D 
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 657 KGLEE-LSNSGLLQPLPLEVNP----------HMALNHQLFPRL 689
           + LE+ + +          +            ++  N   + RL
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 70/486 (14%), Positives = 138/486 (28%), Gaps = 130/486 (26%)

Query: 244 HELHVDDECSVKMWVQRHHK---HVF---FFQDYSVS--EPFILVIQTDWQLQQMLHYGN 295
           H  H+D E       Q  +K    VF   F  ++     +     I +  ++  ++   +
Sbjct: 3   HHHHMDFETGE---HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 296 NGLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRT 355
                               TLL              +   FV + +      L   I+T
Sbjct: 60  A----------VSGTLRLFWTLLSKQEE---------MVQKFVEEVLRINYKFLMSPIKT 100

Query: 356 --KDPRWRLSAFL--VDNPSFDISTIRENFQCRILLCVWHVRRA--------WI------ 397
             + P      ++   D    D     +    R+      +R+A         +      
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNVLIDGVL 159

Query: 398 ---KNLL--KKCYNVEVQQEMFKQLSWILYSSRSSPNSVDTIEEFMQVFVDQCAFMDYFK 452
              K  +    C + +VQ +M  ++ W+   + +SP +V      +++       +D   
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV------LEMLQKLLYQIDPNW 213

Query: 453 SQWLPHIELWVTGIRSLPVTTPEPLAAIETYHLRL-KSKLFHE--------QNVNFWPRV 503
           +    H                  + +I+    RL KSK +          QN   W   
Sbjct: 214 TSRSDH-----------SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 504 DWLIHTL-TTEFHSLYWLDQYSMETGYFENLRDDSFSTNAWSQALHIPDVNVMLDEQNLQ 562
           +     L TT F  +                  D  S    +          +  ++   
Sbjct: 263 NLSCKILLTTRFKQVT-----------------DFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 563 L-AKIISQADRTL---AYTIWNP------GSEFSLCDCPWSRLGNV-CEHVIKLAMVCK- 610
           L  K +    + L     T  NP                W    +V C+   KL  + + 
Sbjct: 306 LLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCD---KLTTIIES 361

Query: 611 SRQVARPLLAAQVYRQALLSLLQNPPDD----PLVLEYAIV---HATRLQQDIKGLEELS 663
           S  V  P    +++ +  LS+    P       ++L   ++           +  + +L 
Sbjct: 362 SLNVLEPAEYRKMFDR--LSVF---PPSAHIPTILLS--LIWFDVIKSDVMVV--VNKLH 412

Query: 664 NSGLLQ 669
              L++
Sbjct: 413 KYSLVE 418

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	690
3kks_A	152	Integrase, IN; beta-strands flanked by alpha-helic	81.09

>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A

Probab=81.09  E-value=6.3  Score=35.00  Aligned_cols=66  Identities=17%  Similarity=0.085  Sum_probs=45.2

Q ss_pred             cEEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHHH
Q 039513          297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIST  376 (690)
Q Consensus       297 ~vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~A  376 (690)
                      .++.+|.|+.-+     .+.++++|.+-+.+ +++.+. +++.+.+..+|..++...    |   |+.|.+|......+.
T Consensus         3 ~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~----g---p~~i~sDnG~~f~s~   68 (152)
T 3kks_A            3 HLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVIP-EETALQVALCILQLIQRY----T---VLHLHSDNGPCFTAH   68 (152)
T ss_dssp             CEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEES-SSCHHHHHHHHHHHHHHS----C---CSEEEECSCHHHHSH
T ss_pred             cEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEeC-CcCHHHHHHHHHHHHHHh----C---CcEEecCCchHhhHH
Confidence            389999998732     26778889876655 666665 666666655554443332    3   999999998877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	690
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	81.01

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=81.01  E-value=1.9  Score=37.28  Aligned_cols=67  Identities=22%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             cEEEEeecccccccCCceEEEEEEcCCCCeeEEEEEEeeccchHHHHHHHHHHHHHHhccCCCcceeEEEecCChhHHHH
Q 039513          297 GLMSFHSTFGSKKLKYPLSTLLVFDSSHNAIPVAWIITSSFVGQFVHKWIGLLAERIRTKDPRWRLSAFLVDNPSFDIST  376 (690)
Q Consensus       297 ~vv~~DsT~~tn~~~~pL~~~~v~d~~g~~~pva~~i~~~et~~~~~~~l~~l~~~~~~~~p~~~P~~~mtD~d~a~~~A  376 (690)
                      +++.+|.||--|+     +.++++|.+-+ +..++.+ .+++.+.+..+|..+...       ..|+.|.||......++
T Consensus         4 g~W~~D~~~~~~k-----~ilv~vD~~Sr-~~~~~~~-~~~~~~~v~~~l~~~~~~-------~~p~~I~sDnG~eF~s~   69 (154)
T d1exqa_           4 GIWQLDCTHLEGK-----VILVAVHVASG-YIEAEVI-PAETGQETAYFLLKLAGR-------WPVKTIHTDNGSNFTGA   69 (154)
T ss_dssp             GEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEE-SSSSHHHHHHHHHHHHHH-------SCCCEEECCCCGGGTSH
T ss_pred             CceeeEEEEECCE-----EEEEEEECcCC-cEEEEEe-cCcchHHHHhhhhhheec-------cCCCEEEEcCCccccch
Confidence            4899999987665     46778888744 4566655 556666666676554432       24899999999887654


Q ss_pred             H
Q 039513          377 I  377 (690)
Q Consensus       377 I  377 (690)
                      .
T Consensus        70 ~   70 (154)
T d1exqa_          70 T   70 (154)
T ss_dssp             H
T ss_pred             h
Confidence            4