Citrus Sinensis ID: 039518
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | 2.2.26 [Sep-21-2011] | |||||||
| Q84TJ0 | 591 | Probable methyltransferas | yes | no | 0.954 | 0.996 | 0.734 | 0.0 | |
| Q9LZA4 | 600 | Probable methyltransferas | no | no | 0.957 | 0.985 | 0.719 | 0.0 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.836 | 0.828 | 0.455 | 1e-134 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.831 | 0.839 | 0.466 | 1e-133 | |
| Q8VZV7 | 612 | Probable methyltransferas | no | no | 0.928 | 0.936 | 0.442 | 1e-132 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.824 | 0.837 | 0.462 | 1e-131 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.833 | 0.740 | 0.435 | 1e-124 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.818 | 0.740 | 0.429 | 1e-122 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.826 | 0.778 | 0.434 | 1e-121 | |
| Q6NPR7 | 770 | Probable methyltransferas | no | no | 0.855 | 0.685 | 0.418 | 1e-116 |
| >sp|Q84TJ0|PMT6_ARATH Probable methyltransferase PMT6 OS=Arabidopsis thaliana GN=At3g10200 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/599 (73%), Positives = 515/599 (85%), Gaps = 10/599 (1%)
Query: 21 MGGYKLGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSRTSPNSSSSGTTTFMN 80
M G +G+ +SG+ IMV L+LMVGSFY G+LFG N PIYVS S S S ++ F N
Sbjct: 1 MRGSVIGAE---RSGQTIMVALVLMVGSFYTGSLFGTNQPIYVSHPS---SHSASSKFAN 54
Query: 81 KVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLE 140
K+ LTYR+ PLVIPESGMNVCPL FNEYIPCH+ +YV +LLPSL+LSR+E+LERHCPPLE
Sbjct: 55 KIELTYRRLPLVIPESGMNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLE 114
Query: 141 KRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGT 200
RLFCLVPPP DYKIPIRWPTSRDYVW+SNVNHT LA+VKGGQNWVHE+GQ WWFPGGGT
Sbjct: 115 HRLFCLVPPPNDYKIPIRWPTSRDYVWRSNVNHTHLAQVKGGQNWVHEQGQFWWFPGGGT 174
Query: 201 HFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKD 260
HFKHGA EYIQRLGNMMTNETG+LRSAGV QVLDVGCGVASF+A+LLPL IQT+SFAPKD
Sbjct: 175 HFKHGAAEYIQRLGNMMTNETGDLRSAGVVQVLDVGCGVASFAAYLLPLGIQTISFAPKD 234
Query: 261 GHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVL 320
GHENQIQFALERGIGAMISA++TKQLPYP++SFEMVHCSRCRVDWH NDGILLKEV R+L
Sbjct: 235 GHENQIQFALERGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLL 294
Query: 321 RPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHN 380
RPNG+FVYS+PPAYRKDK+YP+IWDKLVNLT+AMCWKLI+RK+QTAIWIKEE + CL
Sbjct: 295 RPNGFFVYSSPPAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQK 354
Query: 381 ADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGITQ 440
A+LKLI +CD D KPSW PL +CVQI S QT ++ ERLS Y +L +IGI++
Sbjct: 355 AELKLISLCDVEDVLKPSWKVPLKDCVQI-SGQT-EERPSSLAERLSAYPATLRKIGISE 412
Query: 441 EEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISM 500
+E+T+DT FW++QV HYW+LMNVNETE+RN MDMNA+ GGFA A+NS PVWVMNIVP +M
Sbjct: 413 DEYTSDTVFWREQVNHYWRLMNVNETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATM 472
Query: 501 KNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHY-KNRGEVCSLEDIMLEMD 559
+TLS I+ RG+ GAFHDWCE FSTYPRTYDL+H++H+FSHY K+ G+ C LEDIMLEMD
Sbjct: 473 NDTLSGIFERGLNGAFHDWCEAFSTYPRTYDLVHSDHVFSHYNKSYGDGCLLEDIMLEMD 532
Query: 560 LIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKM-ESVLICRKKFWAIV 617
I+RPQGF+IIRDE+ +I+RIR LAPKFLW+VE H LEN++KK+ ESVL CRK+FWAI+
Sbjct: 533 RIVRPQGFVIIRDEEYIISRIRGLAPKFLWEVETHELENKDKKITESVLFCRKRFWAII 591
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9LZA4|PMT7_ARATH Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/603 (71%), Positives = 519/603 (86%), Gaps = 12/603 (1%)
Query: 22 GGYKL-GSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSRTSPNSSSSGTTT--- 77
GGY L GSA +SG+ IMV L+LMVGSFY G++FG N+PIY+S+ S ++SSS + +
Sbjct: 3 GGYVLFGSA---RSGQMIMVALVLMVGSFYAGSIFGNNSPIYISQPSSSNSSSSSPSQSG 59
Query: 78 ---FMNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELER 134
F NK+ LTYR+T + IPESG+NVCPL FNEYIPCH+ +YV++LLPSL+LSR+EELER
Sbjct: 60 PSNFANKIELTYRRTSVSIPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELER 119
Query: 135 HCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWW 194
HCPPLE+RLFCLVPPPKDYKIPIRWPTSRDYVW+SNVNHT LAEVKGGQNWVHE+GQLWW
Sbjct: 120 HCPPLEQRLFCLVPPPKDYKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWW 179
Query: 195 FPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTM 254
FPGGGTHFKHGAPEYIQRLGNM TNETG+L SAGV QVLDVGCGVASF+A+LLPL I+TM
Sbjct: 180 FPGGGTHFKHGAPEYIQRLGNMTTNETGDLLSAGVEQVLDVGCGVASFAAYLLPLGIKTM 239
Query: 255 SFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLK 314
SFAPKDGHENQIQFALERGI AMISA++TKQ+PYP++SF+MVHCSRCRVDWH NDG+L+K
Sbjct: 240 SFAPKDGHENQIQFALERGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMK 299
Query: 315 EVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQ 374
EV+R+LRPNGYFVYSAPPAYRKDKD+P+IWDKLVNLT+AMCWKLI+RK+QTAIW+KE+++
Sbjct: 300 EVNRLLRPNGYFVYSAPPAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDE 359
Query: 375 SCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLS 434
+CL NA+L+LI +C D K SW PL +CV IS + QK +RLS Y SL
Sbjct: 360 ACLRKNAELELITICGVEDVSKASWKVPLRDCVDIS--ENRQQKPSSLTDRLSSYPTSLR 417
Query: 435 RIGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMN 494
GI+++EFT DT+FW++QV YW+LMNVN+TE+RN MD NA+ GGFA A+NS P+WVMN
Sbjct: 418 EKGISEDEFTLDTNFWREQVNQYWELMNVNKTEVRNVMDTNAFIGGFAAAMNSYPLWVMN 477
Query: 495 IVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDI 554
+VP +M +TLS IY RG+ GA+HDWCEPFSTYPRTYDLLHA+HLF+HYK GE C LEDI
Sbjct: 478 VVPATMNDTLSGIYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEGCLLEDI 537
Query: 555 MLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKFW 614
MLEMD IIRPQGFIIIRDE+S+++R+RDLAPKFLW+VE H L+++ KK E+VL CRKKFW
Sbjct: 538 MLEMDRIIRPQGFIIIRDEESIVSRVRDLAPKFLWEVEAHELQDKYKKTETVLFCRKKFW 597
Query: 615 AIV 617
AI+
Sbjct: 598 AIL 600
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/544 (45%), Positives = 328/544 (60%), Gaps = 28/544 (5%)
Query: 91 LVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPP 150
LV+ +S VC +E IPC D +++ ++ LDLS E ERHCPP E+R CL+PPP
Sbjct: 78 LVVAKS-FPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPP 136
Query: 151 KDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYI 210
YK+PI+WP SRD VW++N+ HT LA+ K QNW+ EKG+ FPGGGTHF +GA +YI
Sbjct: 137 SGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYI 196
Query: 211 QRLGNMMT------NETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHEN 264
+ NM+ N+ G LR+ VLDVGCGVASF A+LL DI TMS AP D H+N
Sbjct: 197 ASIANMLNFSNDVLNDEGRLRT-----VLDVGCGVASFGAYLLASDIMTMSLAPNDVHQN 251
Query: 265 QIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNG 324
QIQFALERGI A + L TK+LPYPS SFE HCSRCR+DW DG+LL E+DRVLRP G
Sbjct: 252 QIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGG 311
Query: 325 YFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLK 384
YF YS+P AY +D++ IW ++ L MCW++ ++ QT +W K + C L
Sbjct: 312 YFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGT 371
Query: 385 LIDVCDAVDEFKPSWNTPLGNCVQISSA---QTNSQKLPPRPERLSVYSESLSRIGITQE 441
+C + + + C+ S +T L P P RL+ L+ G + +
Sbjct: 372 QPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTD 431
Query: 442 EFTTDTSFWQDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPIS 499
F DT W+ QV YW LM+ V +RN MDM A+ G FA AL VWVMN+V
Sbjct: 432 MFEKDTELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVWVMNVVSPD 491
Query: 500 MKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMD 559
NTL IY+RG++G H+WCE FSTYPRTYDLLHA +FS K++G CS ED+++EMD
Sbjct: 492 GPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKG--CSAEDLLIEMD 549
Query: 560 LIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMES---------VLICR 610
I+RP GF+IIRD++S++ I+ W+ N +++ V I +
Sbjct: 550 RILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSEDGENNVVFIVQ 609
Query: 611 KKFW 614
KK W
Sbjct: 610 KKLW 613
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/523 (46%), Positives = 319/523 (60%), Gaps = 10/523 (1%)
Query: 100 VCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIRW 159
VC +E IPC D + + ++ LDLS E ERHCPP E+R CL+PPP YKIPI+W
Sbjct: 81 VCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKIPIKW 140
Query: 160 PTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTN 219
P SRD VW+ N+ HT LA K QNW+ KG+ FPGGGTHF +GA +YI + NM+
Sbjct: 141 PKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIASMANMLNF 200
Query: 220 ETGNLRSAGVFQV-LDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMI 278
L + G + LDVGCGVASF +LL +I TMS AP D H+NQIQFALERGI A +
Sbjct: 201 PNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGIPAYL 260
Query: 279 SALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK 338
L TK+LPYPS SFE+ HCSRCR+DW DGILL E+DRVLRP GYF YS+P AY +D+
Sbjct: 261 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDE 320
Query: 339 DYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPS 398
+ IW ++ L MCW + A++ QT IW K C L +C++ +
Sbjct: 321 EDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAV 380
Query: 399 WNTPLGNCVQISSA---QTNSQKLPPRPERLSVYSESLSRIGITQEEFTTDTSFWQDQVR 455
+ + C+ S +T L P P RL+ L+ G + + F DT W+ +V
Sbjct: 381 YGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTDIFEKDTETWRQRVD 440
Query: 456 HYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGIL 513
YW L++ + +RN MDM A G FA AL VWVMN+VP NTL IY+RG++
Sbjct: 441 TYWDLLSPKIQSDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLM 500
Query: 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573
GA H WCE FSTYPRTYDLLHA + S K RG CS ED++LEMD I+RP GFI+IRD+
Sbjct: 501 GAVHSWCEAFSTYPRTYDLLHAWDIISDIKKRG--CSAEDLLLEMDRILRPSGFILIRDK 558
Query: 574 KSLITRIRDLAPKFLWD-VELHSLENREKKMESV-LICRKKFW 614
+S++ ++ W+ VE + ++ ++V LI +KK W
Sbjct: 559 QSVVDLVKKYLKALHWEAVETKTASESDQDSDNVILIVQKKLW 601
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 263/594 (44%), Positives = 357/594 (60%), Gaps = 21/594 (3%)
Query: 38 IMVGLLLMVG--SFYLGTLFG-GNAPIYVSRTSPNSSSSGTTTFMNKVTLTYRKTPLVIP 94
++VG + ++G Y G+ F G+ S N +G + N+ + + +P
Sbjct: 19 VLVGFIALLGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTGIGSLRNR-DIVLAVSRFEVP 77
Query: 95 ESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYK 154
+S + +C +E IPC D + +L L+LS E E HCPP E+R CLVPPP YK
Sbjct: 78 KS-VPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVGYK 136
Query: 155 IPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLG 214
IP+RWP SRD VW++N+ HT LA+ K QNW+ G FPGGGTHF +GA +YI L
Sbjct: 137 IPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVSLA 196
Query: 215 NMMTNETGNLRSAG-VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG 273
M+ L + G + VLDVGCGVASF A+LL DI MS AP D H+NQIQFALERG
Sbjct: 197 QMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERG 256
Query: 274 IGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPA 333
I + + L TK+LPYPS SFE+ HCSRCR+DW DGILL E+DR+LRP GYFVYS+P A
Sbjct: 257 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 316
Query: 334 YRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVD 393
Y D + I + + +L MCWK++A++ Q+ IW K + SC L L +C + D
Sbjct: 317 YAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGD 376
Query: 394 EFKPSWNTPLGNCVQISSAQTNSQK---LPPRPERLSVYSESLSRIGITQEEFTTDTSFW 450
+ +WN + C+ S + + ++ L P P RL+ L IG+T E+F DT W
Sbjct: 377 DPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETW 436
Query: 451 QDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIY 508
+ +V YW+L+ V + IRN MDM++ GGFA ALN VWVMN++P+ + IY
Sbjct: 437 RLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKIIY 496
Query: 509 NRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFI 568
+RG++GA HDWCE F TYPRT+DL+HA + F+ + RG CS ED+++EMD I+RP+GF+
Sbjct: 497 DRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARG--CSFEDLLIEMDRILRPEGFV 554
Query: 569 IIRDEKSLITRIRDLAPKFLWDVELHSLENREK------KMESVLICRKKFWAI 616
IIRD I+ I+ WD S E K K E VLI RKK W++
Sbjct: 555 IIRDTTDNISYIKKYLTLLKWDK--WSTETTPKGDPLSTKDEIVLIARKKLWSL 606
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/527 (46%), Positives = 311/527 (59%), Gaps = 18/527 (3%)
Query: 100 VCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIRW 159
VC +E IPC D + + ++ LDLS E ERHCPP E+R CL+PPP YK+PI+W
Sbjct: 78 VCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKVPIKW 137
Query: 160 PTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTN 219
P SRD VW+ N+ HT LA K QNW+ KG FPGGGTHF +GA +YI + NM+
Sbjct: 138 PKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASMANMLNY 197
Query: 220 ETGNLRSAGVFQ-VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMI 278
L + G + V DVGCGVASF +LL DI TMS AP D H+NQIQFALERGI A +
Sbjct: 198 PNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPASL 257
Query: 279 SALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK 338
L TK+LPYPS SFE+ HCSRCR+DW DGILL E+DRVLRP GYF YS+P AY +D+
Sbjct: 258 GVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDE 317
Query: 339 DYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPS 398
+ IW ++ L MCWK+ A++ QT IW K C L +C + ++
Sbjct: 318 EDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAV 377
Query: 399 WNTPLGNCVQISSA---QTNSQKLPPRPERLSVYSESLSRIGITQEEFTTDTSFWQDQVR 455
W + C+ S +T L P P RL+ L+ G + F DT W+ +V
Sbjct: 378 WGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELWRQRVD 437
Query: 456 HYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGIL 513
YW L++ + +RN MDM A G FA AL VWVMN+VP NTL IY+RG++
Sbjct: 438 TYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLM 497
Query: 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573
GA H WCE FSTYPRTYDLLHA + S K +G CS D++LEMD I+RP GFIIIRD+
Sbjct: 498 GAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKG--CSEVDLLLEMDRILRPSGFIIIRDK 555
Query: 574 KSLITRIRDLAPKFLWDVELHSLENREKKMES------VLICRKKFW 614
+ R+ D K+L + + + V I +KK W
Sbjct: 556 Q----RVVDFVKKYLKALHWEEVGTKTDSDSDQDSDNVVFIVQKKLW 598
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/535 (43%), Positives = 316/535 (59%), Gaps = 21/535 (3%)
Query: 88 KTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLV 147
K + I + GM CP + EYIPC D + V K L S + R E ERHCP K L CLV
Sbjct: 169 KARVRIKKFGM--CPESMREYIPCLDNTDVIKKLKSTE--RGERFERHCPEKGKGLNCLV 224
Query: 148 PPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAP 207
PPPK Y+ PI WP SRD VW SNV HTRL E KGGQNW+ + FPGGGT F HGA
Sbjct: 225 PPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGAD 284
Query: 208 EYIQRLGNMMTNET--GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQ 265
+Y+ ++ M+++ T ++R A +DVGCGVASF A+LL D+ TMS APKD HENQ
Sbjct: 285 QYLDQMSKMVSDITFGKHIRVA-----MDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQ 339
Query: 266 IQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGY 325
IQFALERG+ AM +A +T++L YPS +F+++HCSRCR++W +DGILL E++R+LR GY
Sbjct: 340 IQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGY 399
Query: 326 FVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKL 385
F ++A P Y+ + W +++NLT ++CWKL+ ++ AIW K N C L
Sbjct: 400 FAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTK 459
Query: 386 IDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGIT-----Q 440
+CD D+ W T L C+ + +P P RL + L I +
Sbjct: 460 PPLCDESDDPDNVWYTNLKPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARK 519
Query: 441 EEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS--LPVWVMNIVPI 498
E F ++ +W + + Y + + + ++RN +DM A GGFA ALN L WV+++VP+
Sbjct: 520 ELFKAESKYWNEIIGGYVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPV 579
Query: 499 SMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEM 558
S NTL IY+RG+LG HDWCEPF TYPRTYD LHA+ LFS + R C + I+LEM
Sbjct: 580 SGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHASGLFSIERKR---CEMSTILLEM 636
Query: 559 DLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKF 613
D I+RP G IRD ++ I+++ W L +L C K+
Sbjct: 637 DRILRPGGRAYIRDSIDVMDEIQEITKAMGWHTSLRDTSEGPHASYRILTCEKRL 691
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/522 (42%), Positives = 315/522 (60%), Gaps = 17/522 (3%)
Query: 100 VCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIRW 159
+C EYIPC D K L S +R E ER+CP L C VP P+ Y+ PI W
Sbjct: 151 ICSENMTEYIPCLDNVEAIKRLNST--ARGERFERNCPNDGMGLNCTVPIPQGYRSPIPW 208
Query: 160 PTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTN 219
P SRD VW +NV HT+L E KGGQNW++++ + FPGGGT F HGA +Y+ ++ M+ +
Sbjct: 209 PRSRDEVWFNNVPHTKLVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQISQMIPD 268
Query: 220 ET-GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMI 278
+ GN VLD+GCGVASF A+L+ ++ TMS APKD HENQIQFALERG+ AM+
Sbjct: 269 ISFGNHTRV----VLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERGVPAMV 324
Query: 279 SALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK 338
+A +T++L YPS +F++VHCSRCR++W +DGILL EV+R+LR GYFV++A P Y+ +K
Sbjct: 325 AAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEK 384
Query: 339 DYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPS 398
W++++NLTT +CW L+ ++ AIW K N +C L +C++ D+
Sbjct: 385 ALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNV 444
Query: 399 WNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGIT-----QEEFTTDTSFWQDQ 453
W L C+ L P P RL + L I I +E F ++ +W++
Sbjct: 445 WYVDLKACITRIEENGYGANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEI 504
Query: 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPV--WVMNIVPISMKNTLSAIYNRG 511
+ +Y ++ + +RN +DM A GGFA AL L V WV+N++P+S NTL IY+RG
Sbjct: 505 ISNYVNALHWKQIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRG 564
Query: 512 ILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571
+LG HDWCEPF TYPRTYDLLHA LFS + R C++ +MLEMD I+RP G + IR
Sbjct: 565 LLGVMHDWCEPFDTYPRTYDLLHAAGLFSIERKR---CNMTTMMLEMDRILRPGGRVYIR 621
Query: 572 DEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKF 613
D ++ + ++++ W L VL+C K+F
Sbjct: 622 DTINVTSELQEIGNAMRWHTSLRETAEGPHSSYRVLLCEKRF 663
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/532 (43%), Positives = 315/532 (59%), Gaps = 22/532 (4%)
Query: 94 PESGMNV-----CPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVP 148
PE G + C T +YIPC D K L + D R E ERHCP ++ L CL+P
Sbjct: 134 PEVGFQIEKLKLCDKTKIDYIPCLDNEEEIKRLNNTD--RGENYERHCP--KQSLDCLIP 189
Query: 149 PPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPE 208
PP YK PI+WP SRD +W +NV HTRL E KGGQNW+ + + FPGGGT F HGA +
Sbjct: 190 PPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQ 249
Query: 209 YIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQF 268
Y+ ++ M+ + T R+ LD+GCGVASF AFL+ + T+S APKD HENQIQF
Sbjct: 250 YLDQISQMIPDITFGSRTR---VALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQF 306
Query: 269 ALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVY 328
ALERG+ AM++ +T++L YPS SFEM+HCSRCR++W +DGILL EV+R+LR GYFV+
Sbjct: 307 ALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVW 366
Query: 329 SAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDV 388
+A P Y+ + + W ++++LT +CW+LI ++ A+W K N SC + +
Sbjct: 367 AAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPL 426
Query: 389 CDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGIT-----QEEF 443
C D+ W + C+ + P RL E L I + +E
Sbjct: 427 CRPDDDPDDVWYVDMKPCITRLPDNGYGANVSTWPARLHDPPERLQSIQMDAYISRKEIM 486
Query: 444 TTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPV--WVMNIVPISMK 501
++ FW + V Y ++ E ++RN +DM A GGFA ALN L + WVMNIVP+S
Sbjct: 487 KAESRFWLEVVESYVRVFRWKEFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGF 546
Query: 502 NTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLI 561
NTL IY+RG+ GA HDWCEPF TYPRTYDL+HA LFS K R C++ +IMLEMD +
Sbjct: 547 NTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFSVEKKR---CNITNIMLEMDRM 603
Query: 562 IRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKF 613
+RP G + IRD SL+ +++ +A W +H +LIC K+
Sbjct: 604 LRPGGHVYIRDSLSLMDQLQQVAKAIGWTAGVHDTGEGPHASVRILICDKRI 655
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 235/561 (41%), Positives = 322/561 (57%), Gaps = 33/561 (5%)
Query: 71 SSSGTTTFMNKVTLTYRKTPLVIPESGMNVCPLTFN-EYIPCHDPSYVKKLLPSLDLSRK 129
SS+G+ + ++ + + + VC +T +YIPC D + L S
Sbjct: 213 SSTGSGAWSTQLVESQNEKKAQVSSIKWKVCNVTAGPDYIPCLDNWQAIRKLHST--KHY 270
Query: 130 EELERHCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEK 189
E ERHCP R CLV P+ YK I+WP SR+ +W +N+ HT+LAEVKG QNWV
Sbjct: 271 EHRERHCPEESPR--CLVSLPEGYKRSIKWPKSREKIWYTNIPHTKLAEVKGHQNWVKMS 328
Query: 190 GQLWWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPL 249
G+ FPGGGT FK+GA YI L + R+ +LDVGCGVASF +L
Sbjct: 329 GEYLTFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTR---VILDVGCGVASFGGYLFDR 385
Query: 250 DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAND 309
D+ +SFAPKD HE Q+QFALERGI AM + + TK+LP+P S F+++HC+RCRV WH
Sbjct: 386 DVLALSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVPWHIEG 445
Query: 310 GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK------I 363
G LL E++R LRP G+FV+SA P YRK ++ IW + LT AMCW+L+ K +
Sbjct: 446 GKLLLELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKDELNEV 505
Query: 364 QTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCV-QISSAQTNSQKLPPR 422
AI+ K + C + + +C D+ +WN PL C+ +++ + + P
Sbjct: 506 GAAIYQKPMSNKCYNERSQNE-PPLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGAVWPE 564
Query: 423 --PERLSVYSESL-SRIGI----TQEEFTTDTSFWQDQV-RHYWQLMNVNETEIRNAMDM 474
PER+ + L S+ G+ QE+FT D W+ V + Y M ++ + +RN MDM
Sbjct: 565 SWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSYLNGMGIDWSYVRNVMDM 624
Query: 475 NAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLH 534
A GGFA AL L +WVMN+VPI +TL IY RG+ G +HDWCE FSTYPRTYDLLH
Sbjct: 625 RAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLH 684
Query: 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVEL- 593
A+HLFS K R C+L +M E+D I+RPQG I+RD+ I I + W+V +
Sbjct: 685 ADHLFSSLKKR---CNLVGVMAEVDRILRPQGTFIVRDDMETIGEIEKMVKSMKWNVRMT 741
Query: 594 HSLENREKKMESVLICRKKFW 614
HS K E +L +K +W
Sbjct: 742 HS-----KDGEGLLSVQKSWW 757
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| 224090013 | 600 | predicted protein [Populus trichocarpa] | 0.965 | 0.993 | 0.798 | 0.0 | |
| 255586012 | 600 | ATP binding protein, putative [Ricinus c | 0.959 | 0.986 | 0.782 | 0.0 | |
| 356500551 | 603 | PREDICTED: probable methyltransferase PM | 0.967 | 0.990 | 0.764 | 0.0 | |
| 359481900 | 601 | PREDICTED: probable methyltransferase PM | 0.959 | 0.985 | 0.77 | 0.0 | |
| 356577676 | 606 | PREDICTED: probable methyltransferase PM | 0.965 | 0.983 | 0.759 | 0.0 | |
| 449521375 | 621 | PREDICTED: probable methyltransferase PM | 0.980 | 0.974 | 0.745 | 0.0 | |
| 449437747 | 600 | PREDICTED: probable methyltransferase PM | 0.959 | 0.986 | 0.756 | 0.0 | |
| 30681189 | 591 | putative methyltransferase PMT6 [Arabido | 0.954 | 0.996 | 0.734 | 0.0 | |
| 15237607 | 600 | putative methyltransferase PMT7 [Arabido | 0.957 | 0.985 | 0.719 | 0.0 | |
| 297806377 | 600 | hypothetical protein ARALYDRAFT_487185 [ | 0.956 | 0.983 | 0.721 | 0.0 |
| >gi|224090013|ref|XP_002308906.1| predicted protein [Populus trichocarpa] gi|118481871|gb|ABK92872.1| unknown [Populus trichocarpa] gi|222854882|gb|EEE92429.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/601 (79%), Positives = 542/601 (90%), Gaps = 5/601 (0%)
Query: 21 MGGYKLGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGN-APIYVSRTSPNSSSS---GTT 76
MGGY GSAFD KSG+ IMV LLLMVGSFY GTLFG N A IYVS+ S +S+SS G
Sbjct: 1 MGGYSWGSAFDSKSGQMIMVALLLMVGSFYTGTLFGNNNASIYVSQLSSSSNSSSSHGIY 60
Query: 77 TFMNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHC 136
TF NKV L YR+TP+VIPESGMNVCPL FNEYIPCHD +YVK L PSLDLSR+EELERHC
Sbjct: 61 TFTNKVALAYRQTPIVIPESGMNVCPLKFNEYIPCHDVAYVKTLFPSLDLSRREELERHC 120
Query: 137 PPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFP 196
PPLEKRLFCLVPPP+DYK+PI+WPTSRDYVW+SNVNHT LAEVKGGQNWVHEK QLWWFP
Sbjct: 121 PPLEKRLFCLVPPPEDYKLPIKWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEKDQLWWFP 180
Query: 197 GGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSF 256
GGGTHFKHGA +YI+RLGNM+T++TG+LRSAGV QVLDVGCGVASFSA+LLPLDIQTMSF
Sbjct: 181 GGGTHFKHGAADYIERLGNMITDDTGDLRSAGVVQVLDVGCGVASFSAYLLPLDIQTMSF 240
Query: 257 APKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEV 316
AP+DGHENQIQFALERGIGAM +A+STKQLPYPSSSFEMVHCSRCRVDWH N GIL+KEV
Sbjct: 241 APRDGHENQIQFALERGIGAMTAAISTKQLPYPSSSFEMVHCSRCRVDWHENGGILIKEV 300
Query: 317 DRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSC 376
+R+LR NGYFVYS+PPAYRKDKDYPLIWDKLVNLT+AMCWKLIARK+QTAIW+K+EN+SC
Sbjct: 301 NRLLRDNGYFVYSSPPAYRKDKDYPLIWDKLVNLTSAMCWKLIARKVQTAIWVKQENESC 360
Query: 377 LLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRI 436
LLHNA++K I++CD VD+ KPSW TPL NC+ SA TN QKLPPRPERLSVYS+SLS+I
Sbjct: 361 LLHNAEMKQINICDTVDDMKPSWKTPLRNCIP-RSAPTNPQKLPPRPERLSVYSKSLSKI 419
Query: 437 GITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIV 496
GIT+EEF++D FW++Q HYW+LMN+NET+IRN MDMNA+ GGFAVALNSLPVWVMNIV
Sbjct: 420 GITEEEFSSDAIFWKNQAGHYWKLMNINETDIRNVMDMNAFIGGFAVALNSLPVWVMNIV 479
Query: 497 PISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIML 556
P+SM NTLSAIY+RG++GAFHDWCEPFSTYPRTYDLLHANHLF+HYK+ GE C LEDIML
Sbjct: 480 PMSMNNTLSAIYDRGLIGAFHDWCEPFSTYPRTYDLLHANHLFTHYKDHGEGCLLEDIML 539
Query: 557 EMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKFWAI 616
EMD IIRPQGFIIIRDE+S +R++ LAPKFLW+VE H LEN+ KK E+VLICRKKFWA+
Sbjct: 540 EMDRIIRPQGFIIIRDEESFTSRVQHLAPKFLWEVESHVLENKGKKTETVLICRKKFWAL 599
Query: 617 V 617
V
Sbjct: 600 V 600
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586012|ref|XP_002533675.1| ATP binding protein, putative [Ricinus communis] gi|223526426|gb|EEF28705.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/598 (78%), Positives = 541/598 (90%), Gaps = 6/598 (1%)
Query: 26 LGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSRTSPNSSSS------GTTTFM 79
L SAFD KSG+ IMV LLLM+GSFYLGTLFG NAPIY+S +S +S+SS G +T
Sbjct: 3 LRSAFDSKSGQMIMVALLLMIGSFYLGTLFGNNAPIYLSNSSSSSNSSSAPSSPGVSTIT 62
Query: 80 NKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPL 139
N++ L YR+TPL+IPE+GMN+CPL FNEYIPCHD SYV +LLP+LDLSR+EELERHCPP
Sbjct: 63 NRIALAYRRTPLLIPENGMNICPLKFNEYIPCHDISYVNELLPTLDLSRREELERHCPPP 122
Query: 140 EKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGG 199
EK LFCLVPPP+DYK+PI+WP SRDYVW+SNVNHTRLAEVKGGQNWVHEK QLWWFPGGG
Sbjct: 123 EKHLFCLVPPPEDYKLPIKWPISRDYVWRSNVNHTRLAEVKGGQNWVHEKDQLWWFPGGG 182
Query: 200 THFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPK 259
THFKHGAPEYIQRLGNM T+E G+LRSAGV QVLDVGCGVASFSA+LLPLDIQTMSFAPK
Sbjct: 183 THFKHGAPEYIQRLGNMTTDEMGDLRSAGVVQVLDVGCGVASFSAYLLPLDIQTMSFAPK 242
Query: 260 DGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRV 319
DGHENQIQFALERGIGAMISA++TKQLPYPSSSFEMVHCSRCRVDWH NDGILLKEVDR+
Sbjct: 243 DGHENQIQFALERGIGAMISAIATKQLPYPSSSFEMVHCSRCRVDWHENDGILLKEVDRL 302
Query: 320 LRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLH 379
LR NGYF+YSAPPAYRKDKDYPLIWDKLVNLT+AMCWKLIARK+QTAIW+K++N+ CL+
Sbjct: 303 LRNNGYFIYSAPPAYRKDKDYPLIWDKLVNLTSAMCWKLIARKVQTAIWVKQDNEQCLMQ 362
Query: 380 NADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGIT 439
NA++KLI++CD D+ KPSWNTPL NC+ S Q ++QKLPPRPERLSVYS+SL+RIGI+
Sbjct: 363 NAEMKLINICDTADDMKPSWNTPLRNCIPRRSVQADAQKLPPRPERLSVYSQSLARIGIS 422
Query: 440 QEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPIS 499
+E+F +D FWQ+QV +YW+LM+V++T+IRN MDMNA+ GGF+VALN+LPVWVMNI+P+S
Sbjct: 423 KEDFASDAVFWQNQVNNYWKLMDVSDTDIRNIMDMNAFVGGFSVALNTLPVWVMNIIPVS 482
Query: 500 MKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMD 559
M NT+SAIY+RG+LG FHDWCEPFSTYPRTYDLLHANHLFSHY+N GE C LEDIMLEMD
Sbjct: 483 MNNTVSAIYDRGLLGVFHDWCEPFSTYPRTYDLLHANHLFSHYRNHGEGCLLEDIMLEMD 542
Query: 560 LIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKFWAIV 617
I RPQGFIIIRDE+S+ +RIRDLAPKFLW+V+ HSLEN++KK+E+VLICRK FWAIV
Sbjct: 543 RITRPQGFIIIRDEESITSRIRDLAPKFLWEVKSHSLENKDKKLETVLICRKIFWAIV 600
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500551|ref|XP_003519095.1| PREDICTED: probable methyltransferase PMT7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/603 (76%), Positives = 527/603 (87%), Gaps = 6/603 (0%)
Query: 21 MGGYKLGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSR----TSPNS-SSSGT 75
MGG+ +GSAFD KSG+ IM LLLM+ SFY G LFG NAP+YVS+ +SPN+ SS+G
Sbjct: 1 MGGFAMGSAFDSKSGQIIMAALLLMIMSFYAGNLFGNNAPLYVSQLVSHSSPNNVSSNGA 60
Query: 76 TTFMNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERH 135
T F NKV LTY KTPLVIPE+G++VCPLTFNEYIPCHD SYV L P+LD SRKEELERH
Sbjct: 61 TKFTNKVALTYWKTPLVIPETGVDVCPLTFNEYIPCHDASYVATLAPTLDFSRKEELERH 120
Query: 136 CPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWF 195
CPPLEKRLFCLVPPPKDYKIPI+WP SRDYVW+SNVNHT LAEVKGGQNWVHEK QLWWF
Sbjct: 121 CPPLEKRLFCLVPPPKDYKIPIKWPLSRDYVWRSNVNHTHLAEVKGGQNWVHEKDQLWWF 180
Query: 196 PGGGTHFKHGAPEYIQRLGNMMTNET-GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTM 254
PGGGTHFKHGA EYI+RLG+M+TNE G+LRSAGV QVLDVGCGVASFSA+LLPL I+TM
Sbjct: 181 PGGGTHFKHGASEYIERLGHMITNEAAGDLRSAGVVQVLDVGCGVASFSAYLLPLGIRTM 240
Query: 255 SFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLK 314
SFAPKD HENQIQFALERGI AMISALSTKQLPYPS SFEM+HCSRCR+D+H NDGILLK
Sbjct: 241 SFAPKDVHENQIQFALERGISAMISALSTKQLPYPSESFEMIHCSRCRIDFHENDGILLK 300
Query: 315 EVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQ 374
E++R+LR NGYFVYSAPPAYRKDKDYP+IWDKL+NLTTAMCW+LIAR++QTAIWIKE NQ
Sbjct: 301 ELNRLLRFNGYFVYSAPPAYRKDKDYPVIWDKLMNLTTAMCWRLIARQVQTAIWIKENNQ 360
Query: 375 SCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLS 434
SCLLHN + K I++CDA D+FKPSWN L NCV + +++T+S KLPP ER SV+SE+L+
Sbjct: 361 SCLLHNVEQKHINLCDAADDFKPSWNIQLKNCVLVRNSKTDSYKLPPSHERHSVFSENLN 420
Query: 435 RIGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMN 494
IGI + EFT+DT FWQ+Q+ HYW+LMN+ ETEIRN MDMNAYCGGFAVALN PVW++N
Sbjct: 421 TIGINRNEFTSDTVFWQEQIGHYWRLMNIGETEIRNVMDMNAYCGGFAVALNKFPVWILN 480
Query: 495 IVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDI 554
+VP SMKNTLS IY RG++G +HDWCEPFS+YPRTYDLLHAN+LFSHYK +GE C LEDI
Sbjct: 481 VVPASMKNTLSGIYARGLIGIYHDWCEPFSSYPRTYDLLHANYLFSHYKTKGEGCLLEDI 540
Query: 555 MLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKFW 614
MLEMD +IRP GFIIIRDE + +RI ++APKFLWDVE LEN+EKKME+VLICRKKFW
Sbjct: 541 MLEMDRLIRPLGFIIIRDENDITSRILEVAPKFLWDVESQMLENKEKKMETVLICRKKFW 600
Query: 615 AIV 617
AIV
Sbjct: 601 AIV 603
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481900|ref|XP_002274283.2| PREDICTED: probable methyltransferase PMT7-like [Vitis vinifera] gi|297739895|emb|CBI30077.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/600 (77%), Positives = 524/600 (87%), Gaps = 8/600 (1%)
Query: 26 LGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSRTSPNSSSSGTTT-------- 77
L +AFDLKSG+ I+V LLLM G+FY GT FG N+PIYV +++ NSS +++
Sbjct: 2 LSAAFDLKSGQLILVALLLMFGAFYSGTFFGNNSPIYVPQSTSNSSFYSSSSPSSSGSSR 61
Query: 78 FMNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCP 137
F N+V LTYRKTPL+I E G++VCPL FNEYIPCHD SYV L SLDLS++EELERHCP
Sbjct: 62 FTNRVALTYRKTPLLISEFGVDVCPLEFNEYIPCHDVSYVNTLRSSLDLSKREELERHCP 121
Query: 138 PLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPG 197
PLEKRLFCLVPPP+DYKIPIRWP+SRDYVW+SNVNHT LAEVKGGQNWVHE QLWWFPG
Sbjct: 122 PLEKRLFCLVPPPQDYKIPIRWPSSRDYVWRSNVNHTHLAEVKGGQNWVHEMNQLWWFPG 181
Query: 198 GGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFA 257
GGTHFKHGAPEYIQRLGNM TNETG+LRSAGVFQVLDVGCGVASFSA+LLPLDIQTMSFA
Sbjct: 182 GGTHFKHGAPEYIQRLGNMTTNETGDLRSAGVFQVLDVGCGVASFSAYLLPLDIQTMSFA 241
Query: 258 PKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVD 317
PKDGHENQIQFALERGIGAMISA+STKQLPYPS+SFEMVHCSRCRVDWH NDGILLKE+D
Sbjct: 242 PKDGHENQIQFALERGIGAMISAISTKQLPYPSNSFEMVHCSRCRVDWHENDGILLKELD 301
Query: 318 RVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCL 377
R+LR NGYFVYSAPPAYRKDKD+P+IWDKLVNLT+AMCWKLIARK+QTAIWIK+ENQ CL
Sbjct: 302 RLLRYNGYFVYSAPPAYRKDKDFPIIWDKLVNLTSAMCWKLIARKVQTAIWIKQENQPCL 361
Query: 378 LHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIG 437
LHNAD L +VCD + SWN PL NC+ + +++++SQKLPPRPERLSVY L+ IG
Sbjct: 362 LHNADQNLFNVCDPDYDSGTSWNKPLRNCIILGTSRSDSQKLPPRPERLSVYWGGLNAIG 421
Query: 438 ITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVP 497
I QE F +DT FWQDQV HY++LMNVN+T+IRN MDMNA GGFAVALN+ PVWVMN+VP
Sbjct: 422 IDQERFISDTIFWQDQVSHYYRLMNVNKTDIRNVMDMNALIGGFAVALNTFPVWVMNVVP 481
Query: 498 ISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLE 557
SM N+LSAIY+RG++G+FHDWCEPFSTYPRTYDLLHANHLFSHY+N GE C LEDIMLE
Sbjct: 482 ASMNNSLSAIYDRGLIGSFHDWCEPFSTYPRTYDLLHANHLFSHYQNHGEGCLLEDIMLE 541
Query: 558 MDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKFWAIV 617
MD I+RPQGFIIIRD + + +RIRD+APKFLW+VE H LEN +KKM+SVLI RKKFWAIV
Sbjct: 542 MDRILRPQGFIIIRDNEQITSRIRDIAPKFLWEVESHLLENEQKKMDSVLIARKKFWAIV 601
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577676|ref|XP_003556950.1| PREDICTED: probable methyltransferase PMT7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/607 (75%), Positives = 524/607 (86%), Gaps = 11/607 (1%)
Query: 21 MGGYKLGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSR----------TSPNS 70
MGG+ +G FD KSG M LLLM+ SFY G LFG NAP+YVS+ N
Sbjct: 1 MGGFAMGYTFDSKSGLT-MAALLLMIVSFYAGILFGNNAPLYVSQLVSHSSSSSSPPNNV 59
Query: 71 SSSGTTTFMNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKE 130
SS+GTT F NKV LTY KTPLVIPE+GM+VCPLTFNEYIPCHD SYV L PSLD SRKE
Sbjct: 60 SSNGTTKFTNKVALTYWKTPLVIPETGMDVCPLTFNEYIPCHDVSYVATLAPSLDFSRKE 119
Query: 131 ELERHCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKG 190
ELERHCPPLEKRLFCLVPPPKDYK+PI+WP SRDYVW+SNVNHT LAEVKGGQNWVHEK
Sbjct: 120 ELERHCPPLEKRLFCLVPPPKDYKLPIKWPLSRDYVWRSNVNHTHLAEVKGGQNWVHEKD 179
Query: 191 QLWWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLD 250
QLWWFPGGGTHFKHGA +YI+RLG+M+TNE G+LRSAGV QVLDVGCGVASFSA+LLPLD
Sbjct: 180 QLWWFPGGGTHFKHGASDYIERLGHMITNEAGDLRSAGVVQVLDVGCGVASFSAYLLPLD 239
Query: 251 IQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDG 310
I+TMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPS SFEM+HCSRCR+D+H NDG
Sbjct: 240 IRTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSESFEMIHCSRCRIDFHENDG 299
Query: 311 ILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIK 370
ILLKE++R+LR NGYFVYSAPPAYRKDKDYP+IWDKL+NLTTAMCW+LIAR++QTAIWIK
Sbjct: 300 ILLKELNRLLRFNGYFVYSAPPAYRKDKDYPVIWDKLMNLTTAMCWRLIARQVQTAIWIK 359
Query: 371 EENQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYS 430
E NQSCLLHN + K I++CDAVD+ KPSWN L NCV + +++T+S KL P ER SV+S
Sbjct: 360 ENNQSCLLHNVEKKHINLCDAVDDSKPSWNIQLKNCVLVRNSKTDSYKLLPTHERHSVFS 419
Query: 431 ESLSRIGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPV 490
E+L+ IGI Q EFT+DT FWQ+Q+ HYW+LMNV++TEI N MDMNAYCGGFAVALN PV
Sbjct: 420 ENLNMIGINQNEFTSDTLFWQEQIGHYWKLMNVSKTEICNVMDMNAYCGGFAVALNKFPV 479
Query: 491 WVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCS 550
W+MN+VP SMKNTLS IY RG++GAFHDWCEPFS+YPRTYDLLHAN+LFSHYK +GE C
Sbjct: 480 WIMNVVPASMKNTLSGIYARGLIGAFHDWCEPFSSYPRTYDLLHANYLFSHYKRKGEGCL 539
Query: 551 LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICR 610
LEDIMLEMD +IRP GFIIIRDE+ + +RI ++APKFLW+VE LEN+EKKME+VLICR
Sbjct: 540 LEDIMLEMDRLIRPLGFIIIRDEEDITSRILEVAPKFLWEVESQMLENKEKKMETVLICR 599
Query: 611 KKFWAIV 617
KKFWAIV
Sbjct: 600 KKFWAIV 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521375|ref|XP_004167705.1| PREDICTED: probable methyltransferase PMT7-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/610 (74%), Positives = 531/610 (87%), Gaps = 5/610 (0%)
Query: 11 SSCCLGKEKKMGGYK-LGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSR---T 66
S C GK++ G + LG F L+SG+ IM+ LLLMVGSFY GTLFG N PIYVS
Sbjct: 12 SKLCGGKKEDNGQFLWLGLFFALQSGQMIMLALLLMVGSFYFGTLFGDNVPIYVSHLPSN 71
Query: 67 SPNSSSSGTTTFMNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDL 126
S +SSS G +T N+V++TYRK PL IPE+G++VCPL + EYIPCHD SY+K+L+P+LDL
Sbjct: 72 STSSSSLGNSTIPNQVSITYRKVPLSIPENGVDVCPLNYTEYIPCHDISYIKELIPTLDL 131
Query: 127 SRKEELERHCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWV 186
SRKEELERHCPPL+ RLFCLVPPP+DYKIP++WPTSRDYVW+SNVNHTRLAEVKGGQNWV
Sbjct: 132 SRKEELERHCPPLDNRLFCLVPPPEDYKIPVKWPTSRDYVWRSNVNHTRLAEVKGGQNWV 191
Query: 187 HEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFL 246
HEK QLWWFPGGGTHFKHGAPEYIQRLGNM TN+TG L SAGV+QVLDVGCGVASFSA+L
Sbjct: 192 HEKDQLWWFPGGGTHFKHGAPEYIQRLGNMTTNDTGTLSSAGVYQVLDVGCGVASFSAYL 251
Query: 247 LPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306
L L IQTMSFAPKDGHENQIQFALERGIGAMISAL+T QLPYP+SSFEMVHCSRCRVDWH
Sbjct: 252 LSLGIQTMSFAPKDGHENQIQFALERGIGAMISALATNQLPYPTSSFEMVHCSRCRVDWH 311
Query: 307 ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTA 366
NDGILLKEVDR+LRPNGYFVYSAPPAYRKDK+YP+IW+KLVNLTTAMCWKLIARK+QTA
Sbjct: 312 ENDGILLKEVDRLLRPNGYFVYSAPPAYRKDKEYPMIWEKLVNLTTAMCWKLIARKVQTA 371
Query: 367 IWIKEENQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERL 426
IWIK+EN +CL+ NA+ K +++CDAVD+F+PSW PL NC+ ++ Q+ +QKLPPRPERL
Sbjct: 372 IWIKQENPACLIINAENKAVEICDAVDDFQPSWKIPLRNCIHVTD-QSYAQKLPPRPERL 430
Query: 427 SVYSESLSRIGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALN 486
SVYS +L +IG++QEEF DT +W+DQV YW+LMNV+ET+IRN MDMNA GGFAVALN
Sbjct: 431 SVYSRNLRKIGVSQEEFDLDTLYWKDQVNQYWKLMNVSETDIRNVMDMNALYGGFAVALN 490
Query: 487 SLPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRG 546
+ PVWVMN+VPI MKNTLSAIY+RG++G FHDWCEPFSTYPRTYDLLHA LFS YK+ G
Sbjct: 491 NFPVWVMNVVPIKMKNTLSAIYDRGLVGVFHDWCEPFSTYPRTYDLLHAYRLFSQYKSGG 550
Query: 547 EVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESV 606
E C LEDIMLEMD I+RPQG+IIIRDE S+ +RI+++A K+LWDVE+ +L+ ++ ESV
Sbjct: 551 EGCLLEDIMLEMDRIVRPQGYIIIRDEPSITSRIQEIASKYLWDVEMQTLQTKDNNPESV 610
Query: 607 LICRKKFWAI 616
LICRKKFWAI
Sbjct: 611 LICRKKFWAI 620
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437747|ref|XP_004136652.1| PREDICTED: probable methyltransferase PMT7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/596 (75%), Positives = 524/596 (87%), Gaps = 4/596 (0%)
Query: 24 YKLGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSR---TSPNSSSSGTTTFMN 80
Y LG F L+SG+ IM+ LLLMVGSFY GTLFG N PIYVS S +SSS G +T N
Sbjct: 5 YGLGYFFALQSGQMIMLALLLMVGSFYFGTLFGDNVPIYVSHLPSNSTSSSSLGNSTIPN 64
Query: 81 KVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLE 140
+V++TYRK PL IPE+G++VCPL + EYIPCHD SY+K+L+P+LDLSRKEELERHCPPL+
Sbjct: 65 QVSITYRKVPLSIPENGVDVCPLNYTEYIPCHDISYIKELIPTLDLSRKEELERHCPPLD 124
Query: 141 KRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGT 200
RLFCLVPPP+DYKIP++WPTSRDYVW+SNVNHTRLAEVKGGQNWVHEK QLWWFPGGGT
Sbjct: 125 NRLFCLVPPPEDYKIPVKWPTSRDYVWRSNVNHTRLAEVKGGQNWVHEKDQLWWFPGGGT 184
Query: 201 HFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKD 260
HFKHGAPEYIQRLGNM TN+TG L SAGV+QVLDVGCGVASFSA+LL L IQTMSFAPKD
Sbjct: 185 HFKHGAPEYIQRLGNMTTNDTGTLSSAGVYQVLDVGCGVASFSAYLLSLGIQTMSFAPKD 244
Query: 261 GHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVL 320
GHENQIQFALERGIGAMISAL+T QLPYP+SSFEMVHCSRCRVDWH NDGILLKEVDR+L
Sbjct: 245 GHENQIQFALERGIGAMISALATNQLPYPTSSFEMVHCSRCRVDWHENDGILLKEVDRLL 304
Query: 321 RPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHN 380
RPNGYFVYSAPPAYRKDK+YP+IW+KLVNLTTAMCWKLIARK+QTAIWIK+EN +CL+ N
Sbjct: 305 RPNGYFVYSAPPAYRKDKEYPMIWEKLVNLTTAMCWKLIARKVQTAIWIKQENPACLIIN 364
Query: 381 ADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGITQ 440
A+ K +++CDAVD+F+PSW PL NC+ ++ Q+ +QKLPPRPERLSVYS +L +IG++Q
Sbjct: 365 AENKAVEICDAVDDFQPSWKIPLRNCIHVTD-QSYAQKLPPRPERLSVYSRNLRKIGVSQ 423
Query: 441 EEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISM 500
EEF DT +W+DQV YW+LMNV+ET+IRN MDMNA GGFAVALN+ PVWVMN+VPI M
Sbjct: 424 EEFDLDTLYWKDQVNQYWKLMNVSETDIRNVMDMNALYGGFAVALNNFPVWVMNVVPIKM 483
Query: 501 KNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDL 560
KNTLSAIY+RG++G FHDWCEPFSTYPRTYDLLHA LFS YK+ GE C LEDIMLEMD
Sbjct: 484 KNTLSAIYDRGLVGVFHDWCEPFSTYPRTYDLLHAYRLFSQYKSGGEGCLLEDIMLEMDR 543
Query: 561 IIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKFWAI 616
I+RPQG+IIIRDE S+ +RI+++A K+LWDVE+ +L+ ++ ESVLICRKKFWAI
Sbjct: 544 IVRPQGYIIIRDEPSITSRIQEIASKYLWDVEMQTLQTKDNNPESVLICRKKFWAI 599
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30681189|ref|NP_187631.2| putative methyltransferase PMT6 [Arabidopsis thaliana] gi|75243292|sp|Q84TJ0.1|PMT6_ARATH RecName: Full=Probable methyltransferase PMT6 gi|28973663|gb|AAO64151.1| unknown protein [Arabidopsis thaliana] gi|110737121|dbj|BAF00512.1| hypothetical protein [Arabidopsis thaliana] gi|332641350|gb|AEE74871.1| putative methyltransferase PMT6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/599 (73%), Positives = 515/599 (85%), Gaps = 10/599 (1%)
Query: 21 MGGYKLGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSRTSPNSSSSGTTTFMN 80
M G +G+ +SG+ IMV L+LMVGSFY G+LFG N PIYVS S S S ++ F N
Sbjct: 1 MRGSVIGAE---RSGQTIMVALVLMVGSFYTGSLFGTNQPIYVSHPS---SHSASSKFAN 54
Query: 81 KVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLE 140
K+ LTYR+ PLVIPESGMNVCPL FNEYIPCH+ +YV +LLPSL+LSR+E+LERHCPPLE
Sbjct: 55 KIELTYRRLPLVIPESGMNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLE 114
Query: 141 KRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGT 200
RLFCLVPPP DYKIPIRWPTSRDYVW+SNVNHT LA+VKGGQNWVHE+GQ WWFPGGGT
Sbjct: 115 HRLFCLVPPPNDYKIPIRWPTSRDYVWRSNVNHTHLAQVKGGQNWVHEQGQFWWFPGGGT 174
Query: 201 HFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKD 260
HFKHGA EYIQRLGNMMTNETG+LRSAGV QVLDVGCGVASF+A+LLPL IQT+SFAPKD
Sbjct: 175 HFKHGAAEYIQRLGNMMTNETGDLRSAGVVQVLDVGCGVASFAAYLLPLGIQTISFAPKD 234
Query: 261 GHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVL 320
GHENQIQFALERGIGAMISA++TKQLPYP++SFEMVHCSRCRVDWH NDGILLKEV R+L
Sbjct: 235 GHENQIQFALERGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLL 294
Query: 321 RPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHN 380
RPNG+FVYS+PPAYRKDK+YP+IWDKLVNLT+AMCWKLI+RK+QTAIWIKEE + CL
Sbjct: 295 RPNGFFVYSSPPAYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQK 354
Query: 381 ADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGITQ 440
A+LKLI +CD D KPSW PL +CVQI S QT ++ ERLS Y +L +IGI++
Sbjct: 355 AELKLISLCDVEDVLKPSWKVPLKDCVQI-SGQT-EERPSSLAERLSAYPATLRKIGISE 412
Query: 441 EEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISM 500
+E+T+DT FW++QV HYW+LMNVNETE+RN MDMNA+ GGFA A+NS PVWVMNIVP +M
Sbjct: 413 DEYTSDTVFWREQVNHYWRLMNVNETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATM 472
Query: 501 KNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHY-KNRGEVCSLEDIMLEMD 559
+TLS I+ RG+ GAFHDWCE FSTYPRTYDL+H++H+FSHY K+ G+ C LEDIMLEMD
Sbjct: 473 NDTLSGIFERGLNGAFHDWCEAFSTYPRTYDLVHSDHVFSHYNKSYGDGCLLEDIMLEMD 532
Query: 560 LIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKM-ESVLICRKKFWAIV 617
I+RPQGF+IIRDE+ +I+RIR LAPKFLW+VE H LEN++KK+ ESVL CRK+FWAI+
Sbjct: 533 RIVRPQGFVIIRDEEYIISRIRGLAPKFLWEVETHELENKDKKITESVLFCRKRFWAII 591
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237607|ref|NP_196026.1| putative methyltransferase PMT7 [Arabidopsis thaliana] gi|75181220|sp|Q9LZA4.1|PMT7_ARATH RecName: Full=Probable methyltransferase PMT7 gi|7406416|emb|CAB85526.1| putative protein [Arabidopsis thaliana] gi|18086557|gb|AAL57703.1| AT5g04060/F8F6_270 [Arabidopsis thaliana] gi|332003309|gb|AED90692.1| putative methyltransferase PMT7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/603 (71%), Positives = 519/603 (86%), Gaps = 12/603 (1%)
Query: 22 GGYKL-GSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSRTSPNSSSSGTTT--- 77
GGY L GSA +SG+ IMV L+LMVGSFY G++FG N+PIY+S+ S ++SSS + +
Sbjct: 3 GGYVLFGSA---RSGQMIMVALVLMVGSFYAGSIFGNNSPIYISQPSSSNSSSSSPSQSG 59
Query: 78 ---FMNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELER 134
F NK+ LTYR+T + IPESG+NVCPL FNEYIPCH+ +YV++LLPSL+LSR+EELER
Sbjct: 60 PSNFANKIELTYRRTSVSIPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELER 119
Query: 135 HCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWW 194
HCPPLE+RLFCLVPPPKDYKIPIRWPTSRDYVW+SNVNHT LAEVKGGQNWVHE+GQLWW
Sbjct: 120 HCPPLEQRLFCLVPPPKDYKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWW 179
Query: 195 FPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTM 254
FPGGGTHFKHGAPEYIQRLGNM TNETG+L SAGV QVLDVGCGVASF+A+LLPL I+TM
Sbjct: 180 FPGGGTHFKHGAPEYIQRLGNMTTNETGDLLSAGVEQVLDVGCGVASFAAYLLPLGIKTM 239
Query: 255 SFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLK 314
SFAPKDGHENQIQFALERGI AMISA++TKQ+PYP++SF+MVHCSRCRVDWH NDG+L+K
Sbjct: 240 SFAPKDGHENQIQFALERGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMK 299
Query: 315 EVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQ 374
EV+R+LRPNGYFVYSAPPAYRKDKD+P+IWDKLVNLT+AMCWKLI+RK+QTAIW+KE+++
Sbjct: 300 EVNRLLRPNGYFVYSAPPAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDE 359
Query: 375 SCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLS 434
+CL NA+L+LI +C D K SW PL +CV IS + QK +RLS Y SL
Sbjct: 360 ACLRKNAELELITICGVEDVSKASWKVPLRDCVDIS--ENRQQKPSSLTDRLSSYPTSLR 417
Query: 435 RIGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMN 494
GI+++EFT DT+FW++QV YW+LMNVN+TE+RN MD NA+ GGFA A+NS P+WVMN
Sbjct: 418 EKGISEDEFTLDTNFWREQVNQYWELMNVNKTEVRNVMDTNAFIGGFAAAMNSYPLWVMN 477
Query: 495 IVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDI 554
+VP +M +TLS IY RG+ GA+HDWCEPFSTYPRTYDLLHA+HLF+HYK GE C LEDI
Sbjct: 478 VVPATMNDTLSGIYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEGCLLEDI 537
Query: 555 MLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKFW 614
MLEMD IIRPQGFIIIRDE+S+++R+RDLAPKFLW+VE H L+++ KK E+VL CRKKFW
Sbjct: 538 MLEMDRIIRPQGFIIIRDEESIVSRVRDLAPKFLWEVEAHELQDKYKKTETVLFCRKKFW 597
Query: 615 AIV 617
AI+
Sbjct: 598 AIL 600
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806377|ref|XP_002871072.1| hypothetical protein ARALYDRAFT_487185 [Arabidopsis lyrata subsp. lyrata] gi|297316909|gb|EFH47331.1| hypothetical protein ARALYDRAFT_487185 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/604 (72%), Positives = 516/604 (85%), Gaps = 14/604 (2%)
Query: 22 GGYKLGSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVSRTSPNSSSSGTTT---- 77
GGY LGSA +SG+ IMV L+LMVGSFY G++FG N+PIY+S+ S +S+SS ++
Sbjct: 3 GGYVLGSA---RSGQTIMVALVLMVGSFYAGSIFGNNSPIYISQPSSSSNSSSSSPSQSG 59
Query: 78 ---FMNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELER 134
F NK+ LTYR+T + IP SG+NVCPL FNEY PCH+ +YV++LLPSL+LSR+EELER
Sbjct: 60 PSNFANKIELTYRRTSVSIPASGVNVCPLKFNEYNPCHNVTYVQQLLPSLNLSRREELER 119
Query: 135 HCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWW 194
HCPPLE+RLFCLVPPPKDYKIPIRWPTSRDYVW+SNVNHT LAEVKGGQNWVHE+GQLWW
Sbjct: 120 HCPPLEQRLFCLVPPPKDYKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWW 179
Query: 195 FPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTM 254
FPGGGTHFKHGAPEYIQRLGNM TNETG+LRSAGV QVLDVGCGVASF+A+LLPL I+TM
Sbjct: 180 FPGGGTHFKHGAPEYIQRLGNMTTNETGDLRSAGVEQVLDVGCGVASFAAYLLPLGIKTM 239
Query: 255 SFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLK 314
SFAPKDGHENQIQFALERGI AMISA++TKQ+PYP++SF+MVHCSRCRVDWH NDGIL+K
Sbjct: 240 SFAPKDGHENQIQFALERGISAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGILIK 299
Query: 315 EVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQ 374
EV+R+LRPNGYFVYSAPPAYRKDKD+P+IWDKLVNLTTAMCWKLI+RK+QTAIW+KE+++
Sbjct: 300 EVNRLLRPNGYFVYSAPPAYRKDKDFPMIWDKLVNLTTAMCWKLISRKVQTAIWVKEDDE 359
Query: 375 SCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPR-PERLSVYSESL 433
+CL N++L+LI +CD D K SW PL +CV I N QK P ERLS Y SL
Sbjct: 360 ACLRKNSELELITICDVEDVSKTSWKVPLRDCVDIIE---NIQKKPSSLTERLSSYPTSL 416
Query: 434 SRIGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVM 493
+ GI+++EFT DT+FW +QV YW+LMNVN+TE+RN MD NA+ GGFA A+NS PVWVM
Sbjct: 417 TEKGISEDEFTLDTNFWTEQVNQYWELMNVNKTEVRNVMDTNAFIGGFAAAMNSYPVWVM 476
Query: 494 NIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLED 553
N+VP +M +TLS IY RG+ GA+HDW EPFSTYPRTYDLLHA+HLF+HYK + C LED
Sbjct: 477 NVVPATMNDTLSGIYQRGLTGAYHDWSEPFSTYPRTYDLLHADHLFAHYKIHSKGCLLED 536
Query: 554 IMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKF 613
IMLEMD IIRPQGFIIIRDE+S+I+R+RDLAPKFLW+VE H L+++ KK E+VL CRK F
Sbjct: 537 IMLEMDRIIRPQGFIIIRDEESIISRVRDLAPKFLWEVETHELQDKYKKTETVLFCRKIF 596
Query: 614 WAIV 617
WAIV
Sbjct: 597 WAIV 600
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.940 | 0.981 | 0.737 | 2.7e-249 | |
| TAIR|locus:2150670 | 600 | AT5G04060 [Arabidopsis thalian | 0.957 | 0.985 | 0.711 | 1.4e-247 | |
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.841 | 0.848 | 0.470 | 1.7e-128 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.844 | 0.836 | 0.456 | 1.4e-126 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.831 | 0.839 | 0.468 | 1.3e-125 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.829 | 0.842 | 0.463 | 3e-124 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.831 | 0.739 | 0.440 | 2.7e-116 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.811 | 0.764 | 0.441 | 4.5e-114 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.818 | 0.740 | 0.429 | 4.5e-114 | |
| TAIR|locus:2013628 | 770 | AT1G29470 [Arabidopsis thalian | 0.808 | 0.648 | 0.436 | 1e-109 |
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2401 (850.3 bits), Expect = 2.7e-249, P = 2.7e-249
Identities = 433/587 (73%), Positives = 504/587 (85%)
Query: 33 KSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVXXXXXXXXXXXXXXFMNKVTLTYRKTPLV 92
+SG+ IMV L+LMVGSFY G+LFG N PIYV F NK+ LTYR+ PLV
Sbjct: 10 RSGQTIMVALVLMVGSFYTGSLFGTNQPIYVSHPSSHSASSK---FANKIELTYRRLPLV 66
Query: 93 IPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKD 152
IPESGMNVCPL FNEYIPCH+ +YV +LLPSL+LSR+E+LERHCPPLE RLFCLVPPP D
Sbjct: 67 IPESGMNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPND 126
Query: 153 YKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQR 212
YKIPIRWPTSRDYVW+SNVNHT LA+VKGGQNWVHE+GQ WWFPGGGTHFKHGA EYIQR
Sbjct: 127 YKIPIRWPTSRDYVWRSNVNHTHLAQVKGGQNWVHEQGQFWWFPGGGTHFKHGAAEYIQR 186
Query: 213 LGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER 272
LGNMMTNETG+LRSAGV QVLDVGCGVASF+A+LLPL IQT+SFAPKDGHENQIQFALER
Sbjct: 187 LGNMMTNETGDLRSAGVVQVLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALER 246
Query: 273 GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332
GIGAMISA++TKQLPYP++SFEMVHCSRCRVDWH NDGILLKEV R+LRPNG+FVYS+PP
Sbjct: 247 GIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSSPP 306
Query: 333 AYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAV 392
AYRKDK+YP+IWDKLVNLT+AMCWKLI+RK+QTAIWIKEE + CL A+LKLI +CD
Sbjct: 307 AYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLISLCDVE 366
Query: 393 DEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGITQEEFTTDTSFWQD 452
D KPSW PL +CVQIS QT ++ ERLS Y +L +IGI+++E+T+DT FW++
Sbjct: 367 DVLKPSWKVPLKDCVQISG-QTE-ERPSSLAERLSAYPATLRKIGISEDEYTSDTVFWRE 424
Query: 453 QVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGI 512
QV HYW+LMNVNETE+RN MDMNA+ GGFA A+NS PVWVMNIVP +M +TLS I+ RG+
Sbjct: 425 QVNHYWRLMNVNETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATMNDTLSGIFERGL 484
Query: 513 LGAFHDWCEPFSTYPRTYDLLHANHLFSHY-KNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571
GAFHDWCE FSTYPRTYDL+H++H+FSHY K+ G+ C LEDIMLEMD I+RPQGF+IIR
Sbjct: 485 NGAFHDWCEAFSTYPRTYDLVHSDHVFSHYNKSYGDGCLLEDIMLEMDRIVRPQGFVIIR 544
Query: 572 DEKSLITRIRDLAPKFLWDVELHSLENREKKM-ESVLICRKKFWAIV 617
DE+ +I+RIR LAPKFLW+VE H LEN++KK+ ESVL CRK+FWAI+
Sbjct: 545 DEEYIISRIRGLAPKFLWEVETHELENKDKKITESVLFCRKRFWAII 591
|
|
| TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2385 (844.6 bits), Expect = 1.4e-247, P = 1.4e-247
Identities = 429/603 (71%), Positives = 509/603 (84%)
Query: 22 GGYKL-GSAFDLKSGRAIMVGLLLMVGSFYLGTLFGGNAPIYVXXXXXXXXXXXX----- 75
GGY L GSA +SG+ IMV L+LMVGSFY G++FG N+PIY+
Sbjct: 3 GGYVLFGSA---RSGQMIMVALVLMVGSFYAGSIFGNNSPIYISQPSSSNSSSSSPSQSG 59
Query: 76 -XXFMNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELER 134
F NK+ LTYR+T + IPESG+NVCPL FNEYIPCH+ +YV++LLPSL+LSR+EELER
Sbjct: 60 PSNFANKIELTYRRTSVSIPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELER 119
Query: 135 HCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWW 194
HCPPLE+RLFCLVPPPKDYKIPIRWPTSRDYVW+SNVNHT LAEVKGGQNWVHE+GQLWW
Sbjct: 120 HCPPLEQRLFCLVPPPKDYKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWW 179
Query: 195 FPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTM 254
FPGGGTHFKHGAPEYIQRLGNM TNETG+L SAGV QVLDVGCGVASF+A+LLPL I+TM
Sbjct: 180 FPGGGTHFKHGAPEYIQRLGNMTTNETGDLLSAGVEQVLDVGCGVASFAAYLLPLGIKTM 239
Query: 255 SFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLK 314
SFAPKDGHENQIQFALERGI AMISA++TKQ+PYP++SF+MVHCSRCRVDWH NDG+L+K
Sbjct: 240 SFAPKDGHENQIQFALERGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMK 299
Query: 315 EVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQ 374
EV+R+LRPNGYFVYSAPPAYRKDKD+P+IWDKLVNLT+AMCWKLI+RK+QTAIW+KE+++
Sbjct: 300 EVNRLLRPNGYFVYSAPPAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDE 359
Query: 375 SCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLS 434
+CL NA+L+LI +C D K SW PL +CV IS + QK +RLS Y SL
Sbjct: 360 ACLRKNAELELITICGVEDVSKASWKVPLRDCVDIS--ENRQQKPSSLTDRLSSYPTSLR 417
Query: 435 RIGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMN 494
GI+++EFT DT+FW++QV YW+LMNVN+TE+RN MD NA+ GGFA A+NS P+WVMN
Sbjct: 418 EKGISEDEFTLDTNFWREQVNQYWELMNVNKTEVRNVMDTNAFIGGFAAAMNSYPLWVMN 477
Query: 495 IVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDI 554
+VP +M +TLS IY RG+ GA+HDWCEPFSTYPRTYDLLHA+HLF+HYK GE C LEDI
Sbjct: 478 VVPATMNDTLSGIYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEGCLLEDI 537
Query: 555 MLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKFW 614
MLEMD IIRPQGFIIIRDE+S+++R+RDLAPKFLW+VE H L+++ KK E+VL CRKKFW
Sbjct: 538 MLEMDRIIRPQGFIIIRDEESIVSRVRDLAPKFLWEVEAHELQDKYKKTETVLFCRKKFW 597
Query: 615 AIV 617
AI+
Sbjct: 598 AIL 600
|
|
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 252/536 (47%), Positives = 334/536 (62%)
Query: 93 IPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKD 152
+P+S + +C +E IPC D + +L L+LS E E HCPP E+R CLVPPP
Sbjct: 76 VPKS-VPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVG 134
Query: 153 YKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQR 212
YKIP+RWP SRD VW++N+ HT LA+ K QNW+ G FPGGGTHF +GA +YI
Sbjct: 135 YKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVS 194
Query: 213 LGNMMTNETGNLRSAG-VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE 271
L M+ L + G + VLDVGCGVASF A+LL DI MS AP D H+NQIQFALE
Sbjct: 195 LAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALE 254
Query: 272 RGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331
RGI + + L TK+LPYPS SFE+ HCSRCR+DW DGILL E+DR+LRP GYFVYS+P
Sbjct: 255 RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 314
Query: 332 PAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDA 391
AY D + I + + +L MCWK++A++ Q+ IW K + SC L L +C +
Sbjct: 315 EAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPS 374
Query: 392 VDEFKPSWNTPLGNCVQISSAQTNSQK---LPPRPERLSVYSESLSRIGITQEEFTTDTS 448
D+ +WN + C+ S + + ++ L P P RL+ L IG+T E+F DT
Sbjct: 375 GDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTE 434
Query: 449 FWQDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSA 506
W+ +V YW+L+ V + IRN MDM++ GGFA ALN VWVMN++P+ +
Sbjct: 435 TWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKI 494
Query: 507 IYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQG 566
IY+RG++GA HDWCE F TYPRT+DL+HA + F+ + RG CS ED+++EMD I+RP+G
Sbjct: 495 IYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQARG--CSFEDLLIEMDRILRPEG 552
Query: 567 FIIIRDEKSLITRIRDLAPKFLWDVELHSLENREK------KMESVLICRKKFWAI 616
F+IIRD I+ I+ WD S E K K E VLI RKK W++
Sbjct: 553 FVIIRDTTDNISYIKKYLTLLKWDK--WSTETTPKGDPLSTKDEIVLIARKKLWSL 606
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 246/539 (45%), Positives = 325/539 (60%)
Query: 91 LVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPP 150
LV+ +S VC +E IPC D +++ ++ LDLS E ERHCPP E+R CL+PPP
Sbjct: 78 LVVAKS-FPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPP 136
Query: 151 KDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYI 210
YK+PI+WP SRD VW++N+ HT LA+ K QNW+ EKG+ FPGGGTHF +GA +YI
Sbjct: 137 SGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYI 196
Query: 211 QRLGNMMTNETGNLRSAGVFQ-VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA 269
+ NM+ L G + VLDVGCGVASF A+LL DI TMS AP D H+NQIQFA
Sbjct: 197 ASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFA 256
Query: 270 LERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329
LERGI A + L TK+LPYPS SFE HCSRCR+DW DG+LL E+DRVLRP GYF YS
Sbjct: 257 LERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYS 316
Query: 330 APPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVC 389
+P AY +D++ IW ++ L MCW++ ++ QT +W K + C L +C
Sbjct: 317 SPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQPPLC 376
Query: 390 DAVDEFKPSWNTPLGNCVQISSAQTNSQK---LPPRPERLSVYSESLSRIGITQEEFTTD 446
+ + + C+ S + K L P P RL+ L+ G + + F D
Sbjct: 377 RSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMFEKD 436
Query: 447 TSFWQDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTL 504
T W+ QV YW LM+ V +RN MDM A+ G FA AL VWVMN+V NTL
Sbjct: 437 TELWKQQVDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVWVMNVVSPDGPNTL 496
Query: 505 SAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRP 564
IY+RG++G H+WCE FSTYPRTYDLLHA +FS K++G CS ED+++EMD I+RP
Sbjct: 497 KLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKG--CSAEDLLIEMDRILRP 554
Query: 565 QGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMES---------VLICRKKFW 614
GF+IIRD++S++ I+ W+ N +++ V I +KK W
Sbjct: 555 TGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSELDQDSEDGENNVVFIVQKKLW 613
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
Identities = 245/523 (46%), Positives = 320/523 (61%)
Query: 100 VCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIRW 159
VC +E IPC D + + ++ LDLS E ERHCPP E+R CL+PPP YKIPI+W
Sbjct: 81 VCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKIPIKW 140
Query: 160 PTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTN 219
P SRD VW+ N+ HT LA K QNW+ KG+ FPGGGTHF +GA +YI + NM+
Sbjct: 141 PKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIASMANMLNF 200
Query: 220 ETGNLRSAGVFQV-LDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMI 278
L + G + LDVGCGVASF +LL +I TMS AP D H+NQIQFALERGI A +
Sbjct: 201 PNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGIPAYL 260
Query: 279 SALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK 338
L TK+LPYPS SFE+ HCSRCR+DW DGILL E+DRVLRP GYF YS+P AY +D+
Sbjct: 261 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDE 320
Query: 339 DYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPS 398
+ IW ++ L MCW + A++ QT IW K C L +C++ +
Sbjct: 321 EDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAV 380
Query: 399 WNTPLGNCV-QISSA--QTNSQKLPPRPERLSVYSESLSRIGITQEEFTTDTSFWQDQVR 455
+ + C+ Q S +T L P P RL+ L+ G + + F DT W+ +V
Sbjct: 381 YGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTDIFEKDTETWRQRVD 440
Query: 456 HYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGIL 513
YW L++ + +RN MDM A G FA AL VWVMN+VP NTL IY+RG++
Sbjct: 441 TYWDLLSPKIQSDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLM 500
Query: 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573
GA H WCE FSTYPRTYDLLHA + S K RG CS ED++LEMD I+RP GFI+IRD+
Sbjct: 501 GAVHSWCEAFSTYPRTYDLLHAWDIISDIKKRG--CSAEDLLLEMDRILRPSGFILIRDK 558
Query: 574 KSLITRIRDLAPKFLWD-VELHSLENREKKMESV-LICRKKFW 614
+S++ ++ W+ VE + ++ ++V LI +KK W
Sbjct: 559 QSVVDLVKKYLKALHWEAVETKTASESDQDSDNVILIVQKKLW 601
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 243/524 (46%), Positives = 315/524 (60%)
Query: 100 VCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIRW 159
VC +E IPC D + + ++ LDLS E ERHCPP E+R CL+PPP YK+PI+W
Sbjct: 78 VCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKVPIKW 137
Query: 160 PTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTN 219
P SRD VW+ N+ HT LA K QNW+ KG FPGGGTHF +GA +YI + NM+
Sbjct: 138 PKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASMANMLNY 197
Query: 220 ETGNLRSAGVFQ-VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMI 278
L + G + V DVGCGVASF +LL DI TMS AP D H+NQIQFALERGI A +
Sbjct: 198 PNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPASL 257
Query: 279 SALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK 338
L TK+LPYPS SFE+ HCSRCR+DW DGILL E+DRVLRP GYF YS+P AY +D+
Sbjct: 258 GVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDE 317
Query: 339 DYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPS 398
+ IW ++ L MCWK+ A++ QT IW K C L +C + ++
Sbjct: 318 EDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAV 377
Query: 399 WNTPLGNCVQISSAQTNSQK---LPPRPERLSVYSESLSRIGITQEEFTTDTSFWQDQVR 455
W + C+ S + K L P P RL+ L+ G + F DT W+ +V
Sbjct: 378 WGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELWRQRVD 437
Query: 456 HYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGIL 513
YW L++ + +RN MDM A G FA AL VWVMN+VP NTL IY+RG++
Sbjct: 438 TYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLM 497
Query: 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573
GA H WCE FSTYPRTYDLLHA + S K +G CS D++LEMD I+RP GFIIIRD+
Sbjct: 498 GAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKG--CSEVDLLLEMDRILRPSGFIIIRDK 555
Query: 574 KSLITRIRDLAPKFLWDVELHSLENREKKMES---VLICRKKFW 614
+ ++ ++ W+ E+ + + + +S V I +KK W
Sbjct: 556 QRVVDFVKKYLKALHWE-EVGTKTDSDSDQDSDNVVFIVQKKLW 598
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 235/534 (44%), Positives = 319/534 (59%)
Query: 88 KTPLVIPESGMNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLV 147
K + I + GM CP + EYIPC D + V K L S + R E ERHCP K L CLV
Sbjct: 169 KARVRIKKFGM--CPESMREYIPCLDNTDVIKKLKSTE--RGERFERHCPEKGKGLNCLV 224
Query: 148 PPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAP 207
PPPK Y+ PI WP SRD VW SNV HTRL E KGGQNW+ + FPGGGT F HGA
Sbjct: 225 PPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGAD 284
Query: 208 EYIQRLGNMMTNET-G-NLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQ 265
+Y+ ++ M+++ T G ++R A +DVGCGVASF A+LL D+ TMS APKD HENQ
Sbjct: 285 QYLDQMSKMVSDITFGKHIRVA-----MDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQ 339
Query: 266 IQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGY 325
IQFALERG+ AM +A +T++L YPS +F+++HCSRCR++W +DGILL E++R+LR GY
Sbjct: 340 IQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGY 399
Query: 326 FVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKL 385
F ++A P Y+ + W +++NLT ++CWKL+ ++ AIW K N C L
Sbjct: 400 FAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTK 459
Query: 386 IDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIG----ITQE 441
+CD D+ W T L C+ + +P P RL + L I I ++
Sbjct: 460 PPLCDESDDPDNVWYTNLKPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARK 519
Query: 442 E-FTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS--LPVWVMNIVPI 498
E F ++ +W + + Y + + + ++RN +DM A GGFA ALN L WV+++VP+
Sbjct: 520 ELFKAESKYWNEIIGGYVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPV 579
Query: 499 SMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEM 558
S NTL IY+RG+LG HDWCEPF TYPRTYD LHA+ LFS + R C + I+LEM
Sbjct: 580 SGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHASGLFSIERKR---CEMSTILLEM 636
Query: 559 DLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612
D I+RP G IRD ++ I+++ W L +L C K+
Sbjct: 637 DRILRPGGRAYIRDSIDVMDEIQEITKAMGWHTSLRDTSEGPHASYRILTCEKR 690
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 232/526 (44%), Positives = 320/526 (60%)
Query: 98 MNVCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPI 157
+ +C T +YIPC D K L + D R E ERHCP ++ L CL+PPP YK PI
Sbjct: 143 LKLCDKTKIDYIPCLDNEEEIKRLNNTD--RGENYERHCP--KQSLDCLIPPPDGYKKPI 198
Query: 158 RWPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLGNMM 217
+WP SRD +W +NV HTRL E KGGQNW+ + + FPGGGT F HGA +Y+ ++ M+
Sbjct: 199 QWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMI 258
Query: 218 TNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAM 277
+ T R+ LD+GCGVASF AFL+ + T+S APKD HENQIQFALERG+ AM
Sbjct: 259 PDITFGSRTR---VALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAM 315
Query: 278 ISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD 337
++ +T++L YPS SFEM+HCSRCR++W +DGILL EV+R+LR GYFV++A P Y+ +
Sbjct: 316 VAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHE 375
Query: 338 KDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKP 397
+ W ++++LT +CW+LI ++ A+W K N SC + +C D+
Sbjct: 376 DNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDD 435
Query: 398 SWNTPLGNCVQI---SSAQTNSQKLPPR----PERL-SVYSES-LSRIGITQEEFTTDTS 448
W + C+ + N P R PERL S+ ++ +SR +E ++
Sbjct: 436 VWYVDMKPCITRLPDNGYGANVSTWPARLHDPPERLQSIQMDAYISR----KEIMKAESR 491
Query: 449 FWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPV--WVMNIVPISMKNTLSA 506
FW + V Y ++ E ++RN +DM A GGFA ALN L + WVMNIVP+S NTL
Sbjct: 492 FWLEVVESYVRVFRWKEFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPV 551
Query: 507 IYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQG 566
IY+RG+ GA HDWCEPF TYPRTYDL+HA LFS K R C++ +IMLEMD ++RP G
Sbjct: 552 IYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFSVEKKR---CNITNIMLEMDRMLRPGG 608
Query: 567 FIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612
+ IRD SL+ +++ +A W +H +LIC K+
Sbjct: 609 HVYIRDSLSLMDQLQQVAKAIGWTAGVHDTGEGPHASVRILICDKR 654
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 224/522 (42%), Positives = 315/522 (60%)
Query: 100 VCPLTFNEYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIRW 159
+C EYIPC D K L S +R E ER+CP L C VP P+ Y+ PI W
Sbjct: 151 ICSENMTEYIPCLDNVEAIKRLNST--ARGERFERNCPNDGMGLNCTVPIPQGYRSPIPW 208
Query: 160 PTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTN 219
P SRD VW +NV HT+L E KGGQNW++++ + FPGGGT F HGA +Y+ ++ M+ +
Sbjct: 209 PRSRDEVWFNNVPHTKLVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQISQMIPD 268
Query: 220 ET-GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMI 278
+ GN VLD+GCGVASF A+L+ ++ TMS APKD HENQIQFALERG+ AM+
Sbjct: 269 ISFGNHTRV----VLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERGVPAMV 324
Query: 279 SALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK 338
+A +T++L YPS +F++VHCSRCR++W +DGILL EV+R+LR GYFV++A P Y+ +K
Sbjct: 325 AAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEK 384
Query: 339 DYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPS 398
W++++NLTT +CW L+ ++ AIW K N +C L +C++ D+
Sbjct: 385 ALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNV 444
Query: 399 WNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGIT-----QEEFTTDTSFWQDQ 453
W L C+ L P P RL + L I I +E F ++ +W++
Sbjct: 445 WYVDLKACITRIEENGYGANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEI 504
Query: 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPV--WVMNIVPISMKNTLSAIYNRG 511
+ +Y ++ + +RN +DM A GGFA AL L V WV+N++P+S NTL IY+RG
Sbjct: 505 ISNYVNALHWKQIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRG 564
Query: 512 ILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571
+LG HDWCEPF TYPRTYDLLHA LFS + R C++ +MLEMD I+RP G + IR
Sbjct: 565 LLGVMHDWCEPFDTYPRTYDLLHAAGLFSIERKR---CNMTTMMLEMDRILRPGGRVYIR 621
Query: 572 DEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKKF 613
D ++ + ++++ W L VL+C K+F
Sbjct: 622 DTINVTSELQEIGNAMRWHTSLRETAEGPHSSYRVLLCEKRF 663
|
|
| TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 232/532 (43%), Positives = 311/532 (58%)
Query: 100 VCPLTFN-EYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIR 158
VC +T +YIPC D + L S E ERHCP R CLV P+ YK I+
Sbjct: 242 VCNVTAGPDYIPCLDNWQAIRKLHST--KHYEHRERHCPEESPR--CLVSLPEGYKRSIK 297
Query: 159 WPTSRDYVWQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMT 218
WP SR+ +W +N+ HT+LAEVKG QNWV G+ FPGGGT FK+GA YI L
Sbjct: 298 WPKSREKIWYTNIPHTKLAEVKGHQNWVKMSGEYLTFPGGGTQFKNGALHYIDFLQESYP 357
Query: 219 NETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMI 278
+ R+ +LDVGCGVASF +L D+ +SFAPKD HE Q+QFALERGI AM
Sbjct: 358 DIAWGNRTR---VILDVGCGVASFGGYLFDRDVLALSFAPKDEHEAQVQFALERGIPAMS 414
Query: 279 SALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK 338
+ + TK+LP+P S F+++HC+RCRV WH G LL E++R LRP G+FV+SA P YRK +
Sbjct: 415 NVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKTE 474
Query: 339 DYPLIWDKLVNLTTAMCWKLIARK------IQTAIWIKEENQSCLLHNADLKLIDVCDAV 392
+ IW + LT AMCW+L+ K + AI+ K + C + + +C
Sbjct: 475 EDVGIWKAMSKLTKAMCWELMTIKKDELNEVGAAIYQKPMSNKCYNERSQNEP-PLCKDS 533
Query: 393 DEFKPSWNTPLGNCV-QISSAQTNSQKLPPR--PERLSVYSESL-SRIGI----TQEEFT 444
D+ +WN PL C+ +++ + + P PER+ + L S+ G+ QE+FT
Sbjct: 534 DDQNAAWNVPLEACIHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFT 593
Query: 445 TDTSFWQDQV-RHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNT 503
D W+ V + Y M ++ + +RN MDM A GGFA AL L +WVMN+VPI +T
Sbjct: 594 ADHERWKTIVSKSYLNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDT 653
Query: 504 LSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIR 563
L IY RG+ G +HDWCE FSTYPRTYDLLHA+HLFS K R C+L +M E+D I+R
Sbjct: 654 LPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSSLKKR---CNLVGVMAEVDRILR 710
Query: 564 PQGFIIIRDEKSLITRIRDLAPKFLWDVEL-HSLENREKKMESVLICRKKFW 614
PQG I+RD+ I I + W+V + HS K E +L +K +W
Sbjct: 711 PQGTFIVRDDMETIGEIEKMVKSMKWNVRMTHS-----KDGEGLLSVQKSWW 757
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q84TJ0 | PMT6_ARATH | 2, ., 1, ., 1, ., - | 0.7345 | 0.9546 | 0.9966 | yes | no |
| Q9LZA4 | PMT7_ARATH | 2, ., 1, ., 1, ., - | 0.7197 | 0.9578 | 0.985 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-09 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 6e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.001 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 750 bits (1939), Expect = 0.0
Identities = 258/516 (50%), Positives = 327/516 (63%), Gaps = 21/516 (4%)
Query: 107 EYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYV 166
+YIPC D K L S + R E ERHCPP E++L CLVPPP YK PI WP SRD V
Sbjct: 1 DYIPCLDNDRAIKFLLSRE--RMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKV 58
Query: 167 WQSNVNHTRLAEVKGGQNWVHEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTNET--GNL 224
W +NV HT+LAE KGGQNWV +G + FPGGGT F HGA YI L M+ + G +
Sbjct: 59 WYANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRV 118
Query: 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTK 284
R LDVGCGVASF A+LL D+ TMSFAPKD HE Q+QFALERG+ AM+ L T+
Sbjct: 119 R-----TALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTR 173
Query: 285 QLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAY-RKDKDYPLI 343
+LPYPS SF+M HCSRC + WHANDGILL EVDRVLRP GYFV S PP Y R ++D
Sbjct: 174 RLPYPSRSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEE 233
Query: 344 WDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPSWNTPL 403
W + L ++CWKL+A+K AIW K N SC K +C D+ +W P+
Sbjct: 234 WKAMEALAKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPM 293
Query: 404 GNCV---QISSAQTNSQKLPPRPERLSVYSESLSRI---GITQEEFTTDTSFWQDQVRHY 457
C+ S + L PERL+ L+ G++ E F DT W+ +V Y
Sbjct: 294 EACITPLPEVSHEVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKY 353
Query: 458 WQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGILGA 515
+L+ +++ +RN MDMNA GGFA AL PVWVMN+VP+ +TL IY+RG++G
Sbjct: 354 KRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGI 413
Query: 516 FHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKS 575
+HDWCEPFSTYPRTYDLLHA+HLFS YK R C+LEDI+LEMD I+RP G +IIRD+
Sbjct: 414 YHDWCEPFSTYPRTYDLLHADHLFSLYKKR---CNLEDILLEMDRILRPGGAVIIRDDVD 470
Query: 576 LITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611
++ +++ +A W+V + E+ E +LI +K
Sbjct: 471 VLDKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-09
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 233 LDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
LDVGCG + L + D + A +R + + LP+P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV---DLSPEMLALARKRAPRKFVVG-DAEDLPFPDE 56
Query: 292 SFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFV 327
SF++V S + + L+E+ RVL+P G V
Sbjct: 57 SFDVVVSSLV-LHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAM----ISALS 282
+VLD+GCG + L D E I+ A E G +
Sbjct: 6 KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65
Query: 283 TKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFV 327
QL +SF++V ++ + +L+E+ RVL+P G +
Sbjct: 66 LPQLQLEDNSFDVVIS-NEVLNHLPDPDKVLEEIIRVLKPGGVLI 109
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (93), Expect = 0.001
Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ-- 285
G VLD+GCG A L L + D + A R GA + +
Sbjct: 48 GGLGVLDIGCGTG-RLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVAD 106
Query: 286 -----LPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329
LP+ S+ + S V L+E+ RVL+P G V S
Sbjct: 107 ALGGVLPFEDSASFDLVISLL-VLHLLPPAKALRELLRVLKPGGRLVLS 154
|
Length = 257 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.79 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.66 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.63 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.61 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.61 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.54 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.53 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.52 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.49 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.48 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.48 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.45 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.45 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.43 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.43 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.42 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.42 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.4 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.4 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.4 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.39 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.38 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.37 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.37 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.36 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.36 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.36 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.36 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.36 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.34 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.34 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.32 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.31 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.3 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.3 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.3 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.29 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.29 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.27 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.27 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.26 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.24 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.23 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.22 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.21 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.2 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.19 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.16 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.16 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.16 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.15 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.15 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.14 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.12 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.12 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.1 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.1 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.09 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.09 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.09 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.08 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.07 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.06 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.06 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.05 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.04 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.04 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.04 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.03 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.03 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.02 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.01 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.01 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.0 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.0 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.99 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.98 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.98 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.98 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.97 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.97 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.96 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.96 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.96 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.96 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.95 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.95 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.95 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.93 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.92 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.89 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.89 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.88 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.84 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.84 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.83 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.8 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.78 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.77 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.76 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.76 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.74 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.73 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.73 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.72 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.71 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.71 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.71 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.69 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.69 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.67 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.66 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.64 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.63 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.61 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.6 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.59 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.59 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.58 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.57 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.54 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.53 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.52 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.52 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.51 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.5 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.5 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.49 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.48 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.46 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.45 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.44 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.41 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.4 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.39 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.36 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.34 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.34 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.32 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.32 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.3 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.28 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.25 | |
| PLN02366 | 308 | spermidine synthase | 98.25 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.2 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.19 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.17 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.17 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.17 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.17 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.1 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.09 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.09 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.09 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.06 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.05 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.05 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.02 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.01 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.01 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.0 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.0 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.96 | |
| PLN02476 | 278 | O-methyltransferase | 97.93 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.9 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.88 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.86 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.84 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.83 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.83 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.83 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 97.82 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.82 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.81 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.78 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.78 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.76 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 97.75 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.74 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.73 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 97.73 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.72 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 97.7 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.68 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 97.67 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.66 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 97.66 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.66 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.65 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.64 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.62 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 97.58 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.56 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 97.55 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 97.52 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.51 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.46 | |
| PLN02823 | 336 | spermine synthase | 97.46 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.45 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.44 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.43 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.43 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.41 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 97.39 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.38 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.38 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 97.38 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 97.36 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.35 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 97.34 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.34 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.34 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 97.34 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.33 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 97.33 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 97.29 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 97.24 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.24 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.22 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.21 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 97.21 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 97.19 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 97.16 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 97.15 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.13 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.09 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.08 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.06 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.04 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.03 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.03 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.96 | |
| PRK04266 | 226 | fibrillarin; Provisional | 96.96 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.92 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.92 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 96.91 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.89 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.86 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 96.85 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.83 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 96.83 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.79 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.74 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 96.73 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.71 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.71 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 96.69 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 96.69 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.69 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 96.68 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 96.66 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 96.66 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.65 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 96.64 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 96.63 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 96.61 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.6 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.59 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 96.58 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.57 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.55 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 96.54 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 96.53 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.52 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.51 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 96.48 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.48 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.48 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.47 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.47 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 96.47 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 96.45 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.45 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.42 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 96.4 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 96.4 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.39 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 96.37 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.36 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 96.34 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.32 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.19 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.17 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 96.17 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 96.16 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.07 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 96.07 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.04 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 96.0 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 95.96 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 95.94 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.93 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 95.86 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 95.81 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 95.8 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 95.79 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 95.75 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 95.74 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 95.7 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 95.67 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.66 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.58 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 95.5 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.5 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.47 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 95.46 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 95.42 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 95.41 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 95.38 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 95.35 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 95.3 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.15 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 95.14 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.05 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 94.88 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 94.87 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 94.82 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 94.78 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 94.74 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.73 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 94.55 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.48 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 94.42 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 94.41 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 94.36 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.28 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 93.78 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 93.77 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 93.74 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 93.71 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.67 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.53 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.5 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.27 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 93.18 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 93.09 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 93.03 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 92.97 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 92.96 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.96 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 92.92 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.81 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 92.8 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 92.65 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 92.62 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 92.57 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 92.29 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 92.25 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 92.19 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 92.12 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 91.89 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 91.88 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 91.78 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 91.72 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 91.71 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 91.55 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 91.54 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 91.52 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 91.48 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 91.44 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 91.31 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 91.17 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 91.12 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 90.92 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 90.64 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 90.62 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 90.58 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.5 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 90.01 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 89.95 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 89.63 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 89.35 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 89.3 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 89.26 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.22 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 89.17 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 88.93 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 88.88 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 88.83 | |
| PHA01634 | 156 | hypothetical protein | 88.07 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 87.69 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 87.62 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 86.98 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 86.65 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.63 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 86.61 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 86.55 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 86.51 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 86.25 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 86.15 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 86.1 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 85.8 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 85.75 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 85.66 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 84.93 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 84.56 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 84.24 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 84.07 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 83.36 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 82.39 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 82.15 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 82.14 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 81.87 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 81.53 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 81.36 | |
| PLN02366 | 308 | spermidine synthase | 80.87 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 80.7 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 80.43 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 80.15 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-154 Score=1236.82 Aligned_cols=495 Identities=53% Similarity=0.985 Sum_probs=475.2
Q ss_pred CccCCCCchhhhhccccccccccccccCCCCCCCCcCCCCCCCCCCCCCCCCCccccccccccccCcchhhhhccCCCce
Q 039518 107 EYIPCHDPSYVKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPPKDYKIPIRWPTSRDYVWQSNVNHTRLAEVKGGQNWV 186 (617)
Q Consensus 107 ~y~pc~d~~~~~~~~~~~~~~~~~~~er~Cp~~~~r~~Clvp~P~~Y~~P~~wP~s~d~~W~~n~~~~~L~~~k~~q~W~ 186 (617)
|||||+|+.++.++. +...+.||+|||||+.+++++||||+|++|+.||+||+|||++|++|+||++|+++|+.|||+
T Consensus 1 dy~PC~D~~~~~~~~--~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv 78 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFL--LSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWV 78 (506)
T ss_pred CCcCCCCHHHHHhhc--cCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccce
Confidence 799999999987763 445566899999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcceecCCCCCcccCChhHHHHHHHhhhhh--ccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHH
Q 039518 187 HEKGQLWWFPGGGTHFKHGAPEYIQRLGNMMTN--ETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHEN 264 (617)
Q Consensus 187 ~~e~d~~~Fpgggt~F~~~a~~Y~~~L~~~L~~--~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~ 264 (617)
+.+|+++.|||||++|.+|+.+|++.|.++++. ..+.+|+ +||||||+|+|+++|+++++.++++++.|.+++
T Consensus 79 ~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~-----~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 79 RVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRT-----ALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEE-----EEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 999999999999999999999999999999988 6777887 999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCC-CCCCCChhh
Q 039518 265 QIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAY-RKDKDYPLI 343 (617)
Q Consensus 265 ~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~-~~~~~~~~~ 343 (617)
++|+|.|||+++.+.+...++|||++++||+|||++|+..|..+.+.+|.|++|+|||||+|+++.|+.+ ....+....
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~ 233 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEE 233 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHH
Confidence 9999999999999998889999999999999999999999998888999999999999999999999999 444566788
Q ss_pred HHHHHHHHHHcCceEEEEeeeeEEEeeccchhhhhhcccCccCCccccCCCCCCccccccccccccccc---ccCCCCCC
Q 039518 344 WDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSA---QTNSQKLP 420 (617)
Q Consensus 344 W~~le~La~~~gw~~v~~~~~~~IwqKp~~~~C~~~r~~~~~p~lC~~~~d~~~~WY~~L~~c~~~~~~---~~~~~~~~ 420 (617)
|++|+++++++||+++.++++++|||||.+++||.+|+..+.|++|++.+|+|++||++|++||+++++ +.++++++
T Consensus 234 ~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~ 313 (506)
T PF03141_consen 234 WNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLP 313 (506)
T ss_pred HHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCC
Confidence 999999999999999999999999999999999999988889999998899999999999999998865 47889999
Q ss_pred CCCCccccCCccccc---cccCccccccchhhHHHHHHHHHHhcc--CCCCCeeeEEeccccccchhhhccCCCeEEEEe
Q 039518 421 PRPERLSVYSESLSR---IGITQEEFTTDTSFWQDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNI 495 (617)
Q Consensus 421 ~wp~rl~~~p~~~~~---~~~~~~~f~~d~~~w~~~v~~y~~~~~--~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv 495 (617)
+||+||+++|+|+.. .|+++|.|++|+++|+++|++|+++++ +++++||||||||||+|||||||.++|||||||
T Consensus 314 ~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNV 393 (506)
T PF03141_consen 314 KWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNV 393 (506)
T ss_pred CChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEe
Confidence 999999999999764 899999999999999999999999888 999999999999999999999999999999999
Q ss_pred ccCCCCchhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChH
Q 039518 496 VPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKS 575 (617)
Q Consensus 496 ~p~~~~~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~ 575 (617)
||..++|||++||||||||+||||||+|||||||||||||++|||+| .+||+|++|||||||||||||++||||+.+
T Consensus 394 VP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~---~~rC~~~~illEmDRILRP~G~~iiRD~~~ 470 (506)
T PF03141_consen 394 VPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY---KDRCEMEDILLEMDRILRPGGWVIIRDTVD 470 (506)
T ss_pred cccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh---cccccHHHHHHHhHhhcCCCceEEEeccHH
Confidence 99999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEe
Q 039518 576 LITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 576 ~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
++++|++|+++|||+++++++|+|++++||||||||
T Consensus 471 vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 471 VLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=315.37 Aligned_cols=196 Identities=18% Similarity=0.326 Sum_probs=157.7
Q ss_pred ccccccccccccccCCCCCCCCCCccc------cCCcccccccc---------CccccccchhhHHHHHHHHHHhcc---
Q 039518 401 TPLGNCVQISSAQTNSQKLPPRPERLS------VYSESLSRIGI---------TQEEFTTDTSFWQDQVRHYWQLMN--- 462 (617)
Q Consensus 401 ~~L~~c~~~~~~~~~~~~~~~wp~rl~------~~p~~~~~~~~---------~~~~f~~d~~~w~~~v~~y~~~~~--- 462 (617)
.+...|+.|.+.. ...+.+||+.-. .+-++|+.... ..=.|..+..+++++|++|++.|.
T Consensus 32 ~~~~~CLVp~P~g--Yk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~ 109 (506)
T PF03141_consen 32 EERLRCLVPPPKG--YKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMI 109 (506)
T ss_pred CCCCccccCCCcc--CCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHh
Confidence 3556899888754 455899999653 33334432221 233477888888999999997766
Q ss_pred -C--CCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc---cccccccCCCCCCCCCccchhhc
Q 039518 463 -V--NETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI---LGAFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 463 -~--~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl---ig~~~~~~~~f~typrtyDl~H~ 535 (617)
+ ..|.||++||+|||+|||||+|++++|.+|+++|.+.| +|+||++|||+ ||++.+...||+. |+||||||
T Consensus 110 ~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~--~~fDmvHc 187 (506)
T PF03141_consen 110 PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPS--NAFDMVHC 187 (506)
T ss_pred hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCc--cchhhhhc
Confidence 3 56899999999999999999999999999999999999 99999999996 5666666777765 99999997
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEe----------cChHHHHHHHhhhhcCCceEEEeeccccCCCcee
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR----------DEKSLITRIRDLAPKFLWDVELHSLENREKKMES 605 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~----------d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~ 605 (617)
++|...|.... ..+|+|+|||||||||||++ |..+++++|+++|++|||+..+.+ ..
T Consensus 188 src~i~W~~~~-----g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~--------~~ 254 (506)
T PF03141_consen 188 SRCLIPWHPND-----GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEK--------GD 254 (506)
T ss_pred ccccccchhcc-----cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheee--------CC
Confidence 77777663211 37999999999999999997 346899999999999999999876 55
Q ss_pred EEEEEecc
Q 039518 606 VLICRKKF 613 (617)
Q Consensus 606 ~l~~~k~~ 613 (617)
+.||||+.
T Consensus 255 ~aIwqKp~ 262 (506)
T PF03141_consen 255 TAIWQKPT 262 (506)
T ss_pred EEEEeccC
Confidence 99999984
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=191.75 Aligned_cols=306 Identities=13% Similarity=0.140 Sum_probs=174.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCC--CCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTK--QLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~--~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||||||+|.++..|++.+. .++++|+++.+++.+++.. .++.+...|+. .+++++++||+|+|+.++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 345799999999999999998754 6788899999998876542 24677777774 567888999999999888
Q ss_pred cccccc-hHHHHHHHHHhccCCeEEEEEeCCCCCC-------CCCChhhHHHHHHHHHHcCceEEEEeee--eEEEeecc
Q 039518 303 VDWHAN-DGILLKEVDRVLRPNGYFVYSAPPAYRK-------DKDYPLIWDKLVNLTTAMCWKLIARKIQ--TAIWIKEE 372 (617)
Q Consensus 303 ~h~~~d-~~~~L~el~RvLrPGG~Liis~p~~~~~-------~~~~~~~W~~le~La~~~gw~~v~~~~~--~~IwqKp~ 372 (617)
+|+..+ ...++.++.|+|||||++++.+...... ++.+-..-..+.++..+.++........ ...+.+..
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKCI 193 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeech
Confidence 777632 5789999999999999999986533222 1122111234666777777776643322 11222222
Q ss_pred chhhhhhcccCccCCccccCCCCCCcccccccccccccccccCCCCCCCCCCccccCCccccccccCccccccchhhHHH
Q 039518 373 NQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGITQEEFTTDTSFWQD 452 (617)
Q Consensus 373 ~~~C~~~r~~~~~p~lC~~~~d~~~~WY~~L~~c~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~f~~d~~~w~~ 452 (617)
.-|..++ .....++.....-+..-...+..++. |+...++.+. ..+.|-...-.+..
T Consensus 194 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~y~~~~i~----~~~~f~g~~~~v~~ 250 (475)
T PLN02336 194 --GAYVKNK-KNQNQICWLWQKVSSTNDKGFQRFLD----------------NVQYKSSGIL----RYERVFGEGFVSTG 250 (475)
T ss_pred --hhhhhcc-CCcceEEEEEEeecCCcchhHHHHhh----------------hhccccccHH----HHHHHhCCCCCCCc
Confidence 2222211 11111222111111111122222221 1111111100 00001000000111
Q ss_pred H---HHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh--cc---cc-cccccCC
Q 039518 453 Q---VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR--GI---LG-AFHDWCE 521 (617)
Q Consensus 453 ~---v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R--Gl---ig-~~~~~~~ 521 (617)
. .....+.+.++. -..|||+|||.|+++..|.+. +. +|+=.|-. ..+..+-++ |+ +- ...|+.+
T Consensus 251 ~v~~te~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~ 325 (475)
T PLN02336 251 GLETTKEFVDKLDLKP--GQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK 325 (475)
T ss_pred hHHHHHHHHHhcCCCC--CCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc
Confidence 1 122233333433 368999999999988877653 22 22223333 555555443 22 11 1234433
Q ss_pred CCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 522 PFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 522 ~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. .+| .+||+|.+.+.+.+. . +.+.+|-|+-|+|+|||.+++.|
T Consensus 326 ~--~~~~~~fD~I~s~~~l~h~---~---d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 326 K--TYPDNSFDVIYSRDTILHI---Q---DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred C--CCCCCCEEEEEECCccccc---C---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 1 233 789999998888765 2 24578999999999999999974
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-16 Score=159.78 Aligned_cols=102 Identities=26% Similarity=0.284 Sum_probs=92.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCC-----cEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIG-----AMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~-----~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.+|.+|||||||||.++..+++... ...++++|+|+.|++.|+++..+ +.+.++|++.|||+|++||+|.+++.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 3788999999999999999998754 45899999999999999998543 77899999999999999999999998
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.++. |+..+|+|++|||||||.+++..
T Consensus 129 lrnv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 87776 99999999999999999998865
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-16 Score=155.71 Aligned_cols=104 Identities=24% Similarity=0.293 Sum_probs=78.5
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
..+|.+|||+|||||.++..++++......+.++|+|+.|++.|+++ ..++.+.++|++++|+++++||+|+|++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 45677899999999999999987633333888999999999999876 2368899999999999999999999999
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.++++. |+..+|+|++|+|||||.+++.+
T Consensus 125 glrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 125 GLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 887766 89999999999999999999875
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-15 Score=157.08 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=107.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++.+. .++++|+++.+++.|+++. ..+.+..++++++++++++||+|+|..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 4677899999999999999988765 6788899999999998652 256788888889998888999999999
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCCC---------------CCCChh------hHHHHHHHHHHcCceEE
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRK---------------DKDYPL------IWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~---------------~~~~~~------~W~~le~La~~~gw~~v 359 (617)
+++|+. ++..+|.++.++|||||.+++++++.... .+.... .-+++.+++++.||+++
T Consensus 207 vLeHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 207 VIEHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred HHHhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 888877 89999999999999999999997643210 111111 13459999999999998
Q ss_pred EEeee
Q 039518 360 ARKIQ 364 (617)
Q Consensus 360 ~~~~~ 364 (617)
...+-
T Consensus 286 ~~~G~ 290 (322)
T PLN02396 286 EMAGF 290 (322)
T ss_pred EEeee
Confidence 76544
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-15 Score=152.62 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=89.0
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC--------CCcEEEEecCCCCCCCCCCeeEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG--------IGAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg--------~~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
+.++.+|||+|||+|.++..++++ +.. ..++++|+|++|++.|+++. .++.+..+|++++|+++++||+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 356778999999999999988876 332 26889999999999998652 25778889999999999999999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++.+++++. ++..+++|+.|+|||||++++.+.
T Consensus 150 ~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 150 TMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EEecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9998877765 899999999999999999999864
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=129.54 Aligned_cols=93 Identities=29% Similarity=0.454 Sum_probs=79.1
Q ss_pred EEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCC--cEEEEecCCCCCCCCCCeeEEEecccccccccchH
Q 039518 233 LDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIG--AMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDG 310 (617)
Q Consensus 233 LDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~ 310 (617)
||+|||+|..+..|++++ ...++++|+++++++.++++..+ +.+...+.+++|+++++||+|++..+++|+ +++.
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 899999999999999982 23788889999999999998543 458889999999999999999999888777 6899
Q ss_pred HHHHHHHHhccCCeEEEE
Q 039518 311 ILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 311 ~~L~el~RvLrPGG~Lii 328 (617)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-14 Score=148.87 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=88.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|+++. ...++++|+++.+++.|+++ +. ++.+.++|+..+|+++++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 567789999999999999998863 12678889999999888764 33 47888899999999999999999998
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++|+. +...+++++.|+|||||.+++++.
T Consensus 195 ~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 195 SGEHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred chhccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888876 789999999999999999999864
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=142.58 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=107.3
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI---GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~---~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.+.++.+|||||||+|..+..|++.. ...++++|+++.+++.|+++.. ++.+..+|+...|+++++||+|++..+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhh
Confidence 44567789999999999999887642 2378889999999999998742 477788888888999999999999888
Q ss_pred ccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh-------------hhHHHHHHHHHHcCceEEEEeeeeEE
Q 039518 302 RVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP-------------LIWDKLVNLTTAMCWKLIARKIQTAI 367 (617)
Q Consensus 302 l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~-------------~~W~~le~La~~~gw~~v~~~~~~~I 367 (617)
++|+. .++..++++++++|||||+++++++.......... ..-..+.++++.+||+.+...+....
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~ 206 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDISDY 206 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCcHH
Confidence 88876 47889999999999999999998753221111000 01234777888888888876554433
Q ss_pred E
Q 039518 368 W 368 (617)
Q Consensus 368 w 368 (617)
|
T Consensus 207 ~ 207 (263)
T PTZ00098 207 W 207 (263)
T ss_pred H
Confidence 3
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-14 Score=144.99 Aligned_cols=103 Identities=23% Similarity=0.357 Sum_probs=91.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+|.+|||||||.|.++..|++.|. .|+++|+++.+++.|+.+ ++.+.+....++++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 677899999999999999999995 788999999999999855 6666677777788876668999999999999
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCC
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAY 334 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~ 334 (617)
|.+ ++..+++++.+++||||.+++++++.+
T Consensus 136 Hv~-dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 136 HVP-DPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred ccC-CHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 987 899999999999999999999998644
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=129.10 Aligned_cols=124 Identities=24% Similarity=0.412 Sum_probs=95.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||||||+|.++..|++.+. .++++|+++.+++. ........+....+.++++||+|+|+.+++|..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc-
Confidence 455799999999999999988876 67888999999877 333444444445556788999999999888876
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCCCC---------CCCCC----Ch--hhHHHHHHHHHHcCceEEE
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPPAY---------RKDKD----YP--LIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~~~---------~~~~~----~~--~~W~~le~La~~~gw~~v~ 360 (617)
++..+|+++.++|||||+++++++... +.... +. ..-+.+.+++++.||+++.
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 899999999999999999999998642 11100 00 1123489999999999875
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=134.77 Aligned_cols=106 Identities=22% Similarity=0.236 Sum_probs=86.8
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----C-CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----I-GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~-~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
.+.++.+|||+|||+|.++..+++.......++++|+++.+++.|+++. . ++.+..+|...+++++++||+|+++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 3456778999999999999999876322237888999999999888652 2 4677888888888888999999998
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.++++. +++..+++++.++|+|||++++..+
T Consensus 122 ~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 122 FGLRNV-PDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccccC-CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 766554 4888999999999999999998765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-13 Score=137.43 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=84.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.++.+|||||||+|.++..|+++... ..++++|+++.|++.|++++ +.+..+|++.++ ++++||+|+|+.+++++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~- 102 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAALQWV- 102 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehhhhhC-
Confidence 45678999999999999999887432 36889999999999998875 567778887775 56799999999877655
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.++..+++++.++|||||++++..+
T Consensus 103 ~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 103 PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 4899999999999999999999865
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=139.02 Aligned_cols=101 Identities=23% Similarity=0.369 Sum_probs=88.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||+|||+|.++..|++.+. .+.++|+++.+++.|+++.....+..+|++.+|+++++||+|+++.+ ++|..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~ 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWCG 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhcC
Confidence 456799999999999999987764 67888999999999999876667888999999999999999998865 45667
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++..+|.++.|+|+|||.++++.+.
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 8999999999999999999998753
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-13 Score=136.47 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCC-CCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLP-YPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lp-f~d~sFDlV~~s~ 300 (617)
++.+|||+|||+|.++..|++++. .++++|+++.+++.|+++ +. ++.+..+++.+++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 346799999999999999999865 677889999999999876 32 3577777877664 5678999999998
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCC-------------------------CCCCChhhHHHHHHHHHHcC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYR-------------------------KDKDYPLIWDKLVNLTTAMC 355 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~-------------------------~~~~~~~~W~~le~La~~~g 355 (617)
+++++. ++..++.++.++|||||++++...+... ..+.....-+++.+++++.|
T Consensus 121 vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aG 199 (255)
T PRK11036 121 VLEWVA-DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAG 199 (255)
T ss_pred HHHhhC-CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCC
Confidence 776654 8899999999999999999987543211 00111122356888899999
Q ss_pred ceEEEEee
Q 039518 356 WKLIARKI 363 (617)
Q Consensus 356 w~~v~~~~ 363 (617)
|+++...+
T Consensus 200 f~~~~~~g 207 (255)
T PRK11036 200 WQIMGKTG 207 (255)
T ss_pred CeEeeeee
Confidence 99887554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=146.25 Aligned_cols=133 Identities=18% Similarity=0.208 Sum_probs=101.9
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----CCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----IGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
+.++.+|||||||+|.++..|++.. ...++++|+|+.+++.|+++. ..+.+..+|...+++++++||+|+|..+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 4567899999999999999888753 226888999999999998752 2467888898888888899999999988
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh------------hhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP------------LIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~------------~~W~~le~La~~~gw~~v~~ 361 (617)
++|+. ++..++.+++|+|||||.++++++......+... ..-..+.+++++.||+.+..
T Consensus 342 l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 342 ILHIQ-DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred ccccC-CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 88876 8999999999999999999998754322111111 01122667777778877653
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=128.71 Aligned_cols=138 Identities=13% Similarity=0.184 Sum_probs=95.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++.+|++++. .++++|+|+.+++.++++ +. ++.+.+.|+..++++ ++||+|+|+.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecch
Confidence 345799999999999999999865 678889999999887754 33 366777788777764 579999999877
Q ss_pred cccc-cchHHHHHHHHHhccCCeEEEEEe-CCC-CC---CCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEeec
Q 039518 303 VDWH-ANDGILLKEVDRVLRPNGYFVYSA-PPA-YR---KDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKE 371 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~RvLrPGG~Liis~-p~~-~~---~~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp 371 (617)
+++. ++...++.++.++|+|||++++.. ... .. ..+.....-+++.+..+ ||+.+........+.++
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~~ 178 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHRT 178 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhccc
Confidence 6554 356789999999999999965543 110 00 01111111223555544 89888765555555543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.8e-13 Score=140.26 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=103.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
++.+|||||||+|.++..+++... ...++++|+++.+++.|+++. .++.+..+|++++++++++||+|+++.+++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 566899999999999988876521 136788999999999998863 34677888999999999999999999887776
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeCCC--CCCCCCCh------hhHHHHHHHHHHcCceEEEEee
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAPPA--YRKDKDYP------LIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p~~--~~~~~~~~------~~W~~le~La~~~gw~~v~~~~ 363 (617)
. ++..+|+++.|+|+|||.+++..+.. .+...... ..-+++.+++++.||+.+..+.
T Consensus 192 ~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 P-DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred C-CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 6 78899999999999999999876422 11110000 0135588899999999887543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-13 Score=117.41 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCcHHHHHhcc--CCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecC-CCCCCCCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLP--LDIQTMSFAPKDGHENQIQFALERG------IGAMISALST-KQLPYPSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~--~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~-~~Lpf~d~sFDlV~~ 298 (617)
|+.+|||+|||+|.++..+++ .+. .++++|+++.+++.|+++. .++.+...|+ ..... .+.||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEE
Confidence 567899999999999999999 444 5788899999999998873 4688888888 33333 345999999
Q ss_pred cc-cccccc--cchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SR-CRVDWH--ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~-~l~h~~--~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.. +++++. ++...+++++.+.|+|||++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 87 444333 356789999999999999999975
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=137.55 Aligned_cols=130 Identities=19% Similarity=0.126 Sum_probs=97.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH--Hh----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL--ER----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~--er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.+.+|||||||+|.++..+++.+.. .+.++|+++.++..++ ++ ..++.+..++++.+|+ +++||+|+|..+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 3467999999999999999988754 4788899998876433 22 2357788889999998 788999999988
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-----CC----------ChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-----KD----------YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-----~~----------~~~~W~~le~La~~~gw~~v~~ 361 (617)
++|.. ++..+|++++++|+|||.+++.+....... +. ....-..+..+++++||+.+..
T Consensus 199 l~H~~-dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 199 LYHRR-SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred hhccC-CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 87765 899999999999999999998743111110 00 0001235888899999998764
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=132.07 Aligned_cols=103 Identities=16% Similarity=0.241 Sum_probs=86.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
..++.+|||||||+|.++..++++... ..+.++|+++.+++.|+++..++.+..+|+..+. ++++||+|+++.+++ |
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~-~ 105 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ-W 105 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh-h
Confidence 356678999999999999999876422 3788899999999999998777888888887665 456899999998665 4
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..+...+++++.++|||||.+++..+
T Consensus 106 ~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 106 LPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 55889999999999999999999865
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-12 Score=126.81 Aligned_cols=106 Identities=28% Similarity=0.329 Sum_probs=88.9
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
+.++.+|||+|||+|.++..+++.......+.++|+++.+++.|+++ ..++.+...|+..+++++++||+|++..+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 34566799999999999999987642223788899999999999876 34567788888888888899999999988
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++|+. ++..+++++.++|+|||++++..+.
T Consensus 97 ~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 97 LQHLE-DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhccC-CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 87776 8999999999999999999998753
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=126.27 Aligned_cols=138 Identities=15% Similarity=0.220 Sum_probs=96.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
+.+|||+|||+|.++.+|++++. .++++|+++.+++.++++ ++++.....+....+++ ++||+|+++.++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 34699999999999999998875 678889999999877643 55666777777666654 57999999987776
Q ss_pred cc-cchHHHHHHHHHhccCCeEEEEEeCCC---CCC--CCCChhhHHHHHHHHHHcCceEEEEeeeeEEEeecc
Q 039518 305 WH-ANDGILLKEVDRVLRPNGYFVYSAPPA---YRK--DKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEE 372 (617)
Q Consensus 305 ~~-~d~~~~L~el~RvLrPGG~Liis~p~~---~~~--~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp~ 372 (617)
+. ++...+++++.|+|+|||++++..-.. ... ........+++.++.. +|+.+........|.+..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~~ 178 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHATD 178 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccccccccc
Confidence 65 346789999999999999966543110 000 0111222344555543 588888765555555543
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-12 Score=134.47 Aligned_cols=131 Identities=17% Similarity=0.057 Sum_probs=96.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH--h----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE--R----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e--r----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++++|||||||+|.++..++..+.. .+.++|.++.++..+.. + ...+.+..++++++|.. .+||+|+|+.+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 4567999999999999999888764 57888999988765432 1 22456677788888764 47999999998
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-----CCC----------hhhHHHHHHHHHHcCceEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-----KDY----------PLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-----~~~----------~~~W~~le~La~~~gw~~v~~~ 362 (617)
++|+. ++..+|++++|+|||||.|++.+....... +.. ...-..+...++++||+.+...
T Consensus 198 L~H~~-dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 198 LYHRK-SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred hhccC-CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 88875 899999999999999999999753221111 000 0012347888999999988643
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-12 Score=130.59 Aligned_cols=134 Identities=16% Similarity=0.084 Sum_probs=99.7
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
+.++.+|||+|||+|..+..+++. +.. ..++++|+++.+++.|+++ +. ++.+..++++.+++++++||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 456778999999999887766654 332 2678899999999999875 33 4677788899999988999999988
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC--------------ChhhHHHHHHHHHHcCceEEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD--------------YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~--------------~~~~W~~le~La~~~gw~~v~~ 361 (617)
.++++ ..+...+++++.|+|||||.|++++.......+. ......++.++++..||..+..
T Consensus 154 ~v~~~-~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 154 CVINL-SPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CcccC-CCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 65544 4578899999999999999999986422111110 0012345778888889987753
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-12 Score=127.83 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=83.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCC-CcEEEeeecCCcHHHHHHHHHh------CCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLD-IQTMSFAPKDGHENQIQFALER------GIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~g-v~~v~v~~iDis~~~lq~A~er------g~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
++.+|||+|||+|.++..++++. .....++++|+++.|++.|+++ ..++.+..+|+..++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 55679999999999999888752 1234788999999999999876 23467888898888865 489999988
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++++. ++...++++++|+|+|||.++++++
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 777765 3467899999999999999999875
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=129.93 Aligned_cols=90 Identities=24% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
+.+|||||||||.++..++++. ...++++|+|++|++.|+++. ...+++++.+|+++++||+|+++.+++|+. +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-N 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-C
Confidence 4579999999999999998874 127889999999999998763 356788999999999999999999876654 8
Q ss_pred hHHHHHHHHHhccCCe
Q 039518 309 DGILLKEVDRVLRPNG 324 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG 324 (617)
+..+++|+.|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 9999999999999953
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=121.75 Aligned_cols=102 Identities=24% Similarity=0.419 Sum_probs=84.5
Q ss_pred CCCeEEEECCCCcHHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLP-LDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~-~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlV~~s 299 (617)
.+.+|||+|||+|.++..|++ .+.. ..++++|+++.+++.|+++ +. ++.+.++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~-~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPG-AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTT-SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCC-CEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 456799999999999999994 4332 3688999999999999884 44 4889999998887 66 789999998
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.+++++. ++..+++++.++|++||.++++.+.
T Consensus 81 ~~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFP-DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTS-HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhcc-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 7775554 8889999999999999999998753
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-12 Score=129.92 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
.++.+|||||||+|..+..+++. ......++++|+++.|++.|+++ +. ++.+..+++..+|++ .+|+|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 46678999999999999888763 11223788999999999999876 22 577888888888764 48999998
Q ss_pred cccccccc-chHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.+++++.. +...++++++++|||||.|++++.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 87777652 346799999999999999999874
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-12 Score=125.31 Aligned_cols=201 Identities=15% Similarity=0.161 Sum_probs=145.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
....+|.|+|||+|..+..|+++-..+ .|+++|.|.+|++.|+++.+++.+..+|+.... ++..+|+++++ ..+||.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A-~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaN-AvlqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDA-VITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFAN-AVLQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCC-eEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhh-hhhhhc
Confidence 344569999999999999999986654 789999999999999999999999999988775 56789999976 577899
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEeeccc--hhhhhhcccCc
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEEN--QSCLLHNADLK 384 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp~~--~~C~~~r~~~~ 384 (617)
+|...+|..+...|.|||.|.+..|. +...+.+. -|.+.+++.-|......... ..++.- ...|....
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPd-N~depsH~----~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lLa--- 175 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPD-NLDEPSHR----LMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELLA--- 175 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCC-ccCchhHH----HHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHhC---
Confidence 89999999999999999999998873 33323222 37777777666654432222 234433 34444332
Q ss_pred cCCccccCCCCCCcccccccccccccccccCCCCCCCCCCccccCCccccccccCccccccchhhHHHHHHHHHHhcc
Q 039518 385 LIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGITQEEFTTDTSFWQDQVRHYWQLMN 462 (617)
Q Consensus 385 ~p~lC~~~~d~~~~WY~~L~~c~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~ 462 (617)
+.-|. -+-..+.+|++|..-- +..+++.+..+.+|=+|| |.+.|+.-.+.|...|.
T Consensus 176 -~~~~r-vDiW~T~Y~h~l~~a~-aIvdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 176 -PLACR-VDIWHTTYYHQLPGAD-AIVDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLALLA 231 (257)
T ss_pred -cccce-eeeeeeeccccCCCcc-chhhheeccccceecccc-------------------CHHHHHHHHHHHHHHHH
Confidence 22343 3455577888775543 234566666677665555 45678888889998876
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-12 Score=131.76 Aligned_cols=132 Identities=13% Similarity=0.213 Sum_probs=93.9
Q ss_pred CcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcH----HHHHhccCCC----cEEEeeecCCcHHHHHHHHH
Q 039518 200 THFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVAS----FSAFLLPLDI----QTMSFAPKDGHENQIQFALE 271 (617)
Q Consensus 200 t~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~----~a~~La~~gv----~~v~v~~iDis~~~lq~A~e 271 (617)
|.|.+....+......+++.........++.+|||+|||+|. ++..|++... ....|.++|+++.+++.|++
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 445455554443333334322222223345789999999995 5656655432 13589999999999999987
Q ss_pred hC--------------------------------CCcEEEEecCCCCCCCCCCeeEEEecccccccc-cchHHHHHHHHH
Q 039518 272 RG--------------------------------IGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH-ANDGILLKEVDR 318 (617)
Q Consensus 272 rg--------------------------------~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~-~d~~~~L~el~R 318 (617)
.- ..+.+.+.|+...++++++||+|+|.++++++. ++...+++++++
T Consensus 151 ~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~ 230 (264)
T smart00138 151 GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAE 230 (264)
T ss_pred CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHH
Confidence 42 136777888888887788999999999888886 345679999999
Q ss_pred hccCCeEEEEEeC
Q 039518 319 VLRPNGYFVYSAP 331 (617)
Q Consensus 319 vLrPGG~Liis~p 331 (617)
+|+|||+|++...
T Consensus 231 ~L~pGG~L~lg~~ 243 (264)
T smart00138 231 ALKPGGYLFLGHS 243 (264)
T ss_pred HhCCCeEEEEECc
Confidence 9999999999653
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-12 Score=128.60 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=90.3
Q ss_pred CcccCCCCeEEEECCCCcHHHHHhccCCCc-----EEEeeecCCcHHHHHHHHHhC----C----CcEEEEecCCCCCCC
Q 039518 223 NLRSAGVFQVLDVGCGVASFSAFLLPLDIQ-----TMSFAPKDGHENQIQFALERG----I----GAMISALSTKQLPYP 289 (617)
Q Consensus 223 ~lr~~~g~rVLDIGCGtG~~a~~La~~gv~-----~v~v~~iDis~~~lq~A~erg----~----~~~~~~~d~~~Lpf~ 289 (617)
.+....++++||++||||-++..+.+.-.. ...++..|+++.|+..+++|. . .+.+..+|+++|||+
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 455567789999999999999988875221 246778899999999888763 2 267788899999999
Q ss_pred CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 290 SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.+||+.+.++.+-.++ ++.+.|+|++|||||||+|.+-.
T Consensus 175 d~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999888887 89999999999999999999865
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=131.83 Aligned_cols=96 Identities=23% Similarity=0.359 Sum_probs=80.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCc--EEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQ--TMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~--~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
..+|||+|||+|.++..|++.... ...+.++|+|+.+++.|.++..++.+.++|+.++|+++++||+|++..+ .
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----~ 161 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----P 161 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----C
Confidence 456999999999999998765321 2367899999999999998887888999999999999999999997642 1
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
..+.++.|+|||||+|++..|.
T Consensus 162 ----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 162 ----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ----CCHHHHHhhccCCCEEEEEeCC
Confidence 2468999999999999998874
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-12 Score=124.94 Aligned_cols=101 Identities=25% Similarity=0.315 Sum_probs=86.8
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-CcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-GAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
+.+|||+|||+|.++..+++.+... .++++|+++.+++.++++.. ++.+..+|+..+++++++||+|+++.++++. .
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-D 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc-c
Confidence 4679999999999999998876533 67889999999998888743 4678888999999888999999999876554 5
Q ss_pred chHHHHHHHHHhccCCeEEEEEeC
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++..++.++.++|+|||.++++++
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 899999999999999999999875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=122.62 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=96.3
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
+|||||||+|.++..+++.... ..++++|+++.+++.|+++ +. .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 5999999999999999876432 3678889999999988875 22 357777787666664 57999999888877
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC-------ChhhHHHHHHHHHHcCceEEEEe
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD-------YPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~-------~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+. ++..+++++.++|+|||++++.++........ ....-.++.+++++.||+++...
T Consensus 80 ~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 80 IK-DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CC-CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 65 78999999999999999999987532111100 00112347778888999987643
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-12 Score=113.49 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=74.7
Q ss_pred EEEECCCCcHHHHHhccCCC--cEEEeeecCCcHHHHHHHHHhC----CCcEEEEecCCCCCCCCCCeeEEEeccc-ccc
Q 039518 232 VLDVGCGVASFSAFLLPLDI--QTMSFAPKDGHENQIQFALERG----IGAMISALSTKQLPYPSSSFEMVHCSRC-RVD 304 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv--~~v~v~~iDis~~~lq~A~erg----~~~~~~~~d~~~Lpf~d~sFDlV~~s~~-l~h 304 (617)
|||+|||+|..+..+++... ....+.++|+++.+++.++++. .++.+.+.|+.++++.+++||+|+|+.. ++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 79999999999999987631 1147889999999999998874 6889999999999988899999999655 666
Q ss_pred cc-cchHHHHHHHHHhccCCe
Q 039518 305 WH-ANDGILLKEVDRVLRPNG 324 (617)
Q Consensus 305 ~~-~d~~~~L~el~RvLrPGG 324 (617)
+. ++...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 54 345779999999999998
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-12 Score=129.28 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=79.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC--C---------cEEEEecCCCCCCCCCCeeEEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI--G---------AMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~--~---------~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
|++|||+|||+|.++..|++.|. .|+++|+++.+++.|+++.. | +.+...+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 57899999999999999999986 67888999999999998721 1 12223333333 24599999
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
|+.+++|.. |+..++..+.++|||||.++|++-+
T Consensus 164 csevleHV~-dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 164 CSEVLEHVK-DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eHHHHHHHh-CHHHHHHHHHHHhCCCCceEeeehh
Confidence 999999876 8999999999999999999999753
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=128.02 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=78.8
Q ss_pred ccCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCC
Q 039518 220 ETGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSS 292 (617)
Q Consensus 220 ~~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~s 292 (617)
...++++++|.+|||||||.|.++.+++++ |+ .++++.+|+++.+.|+++ |+. +.+...|..+++. +
T Consensus 54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~ 127 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---K 127 (273)
T ss_dssp HHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---C
Confidence 345678899999999999999999999998 65 567778999999988765 543 6777777776653 8
Q ss_pred eeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 293 FEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 293 FDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
||.|++..++.|+. ++...+++++.++|+|||.+++..
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999999986 567899999999999999998753
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=127.44 Aligned_cols=97 Identities=14% Similarity=0.247 Sum_probs=79.1
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
.+|||+|||+|.++.+|++++. .++++|+++.+++.++++ ++++.+...|+...++ +++||+|+++.++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 4699999999999999998875 678889999999877654 5667777777766655 6789999998877665
Q ss_pred c-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 306 H-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 306 ~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
. ++...+++++.++|+|||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4 356789999999999999977754
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-11 Score=118.17 Aligned_cols=118 Identities=20% Similarity=0.201 Sum_probs=93.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++..++.+.. ...++++|+++.+++.|+++ +. ++.+..++++.++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 367899999999999998886533 23788899999999888764 44 37788888888776 77999999863
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+ .+...++.+++++|||||.+++..+... -.+++.+++..||.+...
T Consensus 121 --~-~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 121 --V-ASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVEEV 167 (187)
T ss_pred --c-cCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEeee
Confidence 2 3678899999999999999999864211 345888999999997763
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-11 Score=133.09 Aligned_cols=291 Identities=11% Similarity=0.089 Sum_probs=158.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ ++ .+.+..+|... ++++++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 457999999999999988865322 3678899999999999876 33 35566666432 2345689999986321
Q ss_pred cccc---------------------cc----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 303 VDWH---------------------AN----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 303 ~h~~---------------------~d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
+... ++ ...++.++.++|+|||.+++.... .. -+.+.+++.+.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~------~q---~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF------KQ---EEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC------ch---HHHHHHHHHhcCCC
Confidence 1100 00 133677889999999999986531 11 34577888888887
Q ss_pred EEEEeeeeEEEeeccchhhhhhcccCccCCccccCCCCCCcccccccccccccccccCCCCCCCCCCcc-ccCCcccccc
Q 039518 358 LIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERL-SVYSESLSRI 436 (617)
Q Consensus 358 ~v~~~~~~~IwqKp~~~~C~~~r~~~~~p~lC~~~~d~~~~WY~~L~~c~~~~~~~~~~~~~~~wp~rl-~~~p~~~~~~ 436 (617)
.+....+.. +. + ..-...+.++........+..+.+=.+++ ...-|. .
T Consensus 288 ~~~~~~D~~------g~-----------~-----------R~v~~~~~~~~rs~~rr~g~~~~~~q~~~~e~~~p~---~ 336 (506)
T PRK01544 288 IESVYKDLQ------GH-----------S-----------RVILISPINLNRSYARRIGKSLSGVQQNLLDNELPK---Y 336 (506)
T ss_pred ceEEEecCC------CC-----------c-----------eEEEeccccCCcceeccCCCCCCHHHHHHHHhhhhh---h
Confidence 654322210 00 0 00011111121110000000000000000 000011 1
Q ss_pred ccCccccccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccC----CCeEEEEeccCCCCchhHHHHhhcc
Q 039518 437 GITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS----LPVWVMNIVPISMKNTLSAIYNRGI 512 (617)
Q Consensus 437 ~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~----~~v~vmnv~p~~~~~~l~~~~~RGl 512 (617)
+++.+. +-...-..++|+|||.|.|.+.+.. .+++-|=+-.......+..+.++||
T Consensus 337 ~i~~ek--------------------lf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l 396 (506)
T PRK01544 337 LFSKEK--------------------LVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI 396 (506)
T ss_pred CCCHHH--------------------hCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC
Confidence 111110 1122358899999999999998853 2344443333222245566677776
Q ss_pred cccccccCCCC----CCCC-Cccchhhcccccc-cc-c--cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHh
Q 039518 513 LGAFHDWCEPF----STYP-RTYDLLHANHLFS-HY-K--NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRD 582 (617)
Q Consensus 513 ig~~~~~~~~f----~typ-rtyDl~H~~~~~s-~~-~--~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~ 582 (617)
-.+ .-.|..+ .-+| .+.|-|| -.|. -| | ..+.|=--...|-++-|+|+|||.+.++ |..+..+.+.+
T Consensus 397 ~N~-~~~~~~~~~~~~~~~~~sv~~i~--i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~ 473 (506)
T PRK01544 397 TNF-LLFPNNLDLILNDLPNNSLDGIY--ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIE 473 (506)
T ss_pred CeE-EEEcCCHHHHHHhcCcccccEEE--EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 222 1122221 2244 7777777 2333 22 1 1233333358899999999999998886 66655555444
Q ss_pred hh
Q 039518 583 LA 584 (617)
Q Consensus 583 ~~ 584 (617)
..
T Consensus 474 ~~ 475 (506)
T PRK01544 474 LI 475 (506)
T ss_pred HH
Confidence 43
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-11 Score=117.42 Aligned_cols=103 Identities=23% Similarity=0.238 Sum_probs=85.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------IGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++..+++.......+.++|+++.+++.++++. .++.+...|+..+++++++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 4568999999999999999887632347889999999999988762 3467778888888887889999999887
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++++. ++..++.++.++|+|||.+++.+.
T Consensus 131 l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 76655 789999999999999999988754
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=119.03 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=94.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC-CCCC-CCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALST-KQLP-YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~-~~Lp-f~d~sFDlV~~s~~l~ 303 (617)
.+|.||||+|||.|.+..+|.+. ++ ...++|++++.+..+.++|+++ .++|+ +.|+ |++++||.|+++.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rGv~V--iq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARGVSV--IQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcCCCE--EECCHHHhHhhCCCCCccEEehHhHHH
Confidence 45678999999999999999874 44 5567799999999999999874 45554 3454 8999999999999887
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCC-CCC----------C---CChh-----------hHHHHHHHHHHcCceE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAY-RKD----------K---DYPL-----------IWDKLVNLTTAMCWKL 358 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~-~~~----------~---~~~~-----------~W~~le~La~~~gw~~ 358 (617)
+.. +|..+|.|+.|+ |...+++-|+.. |.. | ..+. ....++.++++.|+++
T Consensus 87 ~~~-~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 87 AVR-RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred hHh-HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEE
Confidence 776 899999999776 668888887642 111 0 0111 1233888888888887
Q ss_pred EE
Q 039518 359 IA 360 (617)
Q Consensus 359 v~ 360 (617)
+.
T Consensus 163 ~~ 164 (193)
T PF07021_consen 163 EE 164 (193)
T ss_pred EE
Confidence 76
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=8e-11 Score=116.56 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=86.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
++.+|||+|||+|.++..+++.......+.++|+++.+++.++++. .++.+..+++.++++++++||+|+++..+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 5678999999999999999887653247888999999999988864 2467888888888888889999999877666
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.. ++..+++++.++|+|||++++.+.
T Consensus 119 ~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 119 VT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred cc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 54 789999999999999999998764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-11 Score=119.76 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=81.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH- 306 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~- 306 (617)
++.+|||||||+|.++..|++... ...++++|+++.+++.|+++...+.+..+++.. |+++++||+|+++.+++|+.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCH
Confidence 455699999999999999987622 237889999999999999876667778888777 88899999999999888876
Q ss_pred cchHHHHHHHHHhccCCeEEEEEe
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++...+++++.|++ +++++++.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 34578999999998 56787765
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-11 Score=116.64 Aligned_cols=122 Identities=23% Similarity=0.373 Sum_probs=89.8
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCCcE-EEEecCCCCC-CCCCCeeEEEeccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIGAM-ISALSTKQLP-YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~~~-~~~~d~~~Lp-f~d~sFDlV~~s~~l~ 303 (617)
.|||||||||..-.++--. ...+++.+|.++.|-++|.++ ..++. +++++.+++| ++++++|.|+|..++.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 4899999999776555422 223788899999998887654 23344 7888999998 8999999999999887
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
... ++.+.|+|+.|+|||||.+++..... .+.. .|..+-+-...--|+.+.
T Consensus 157 Sve-~~~k~L~e~~rlLRpgG~iifiEHva---~~y~--~~n~i~q~v~ep~~~~~~ 207 (252)
T KOG4300|consen 157 SVE-DPVKQLNEVRRLLRPGGRIIFIEHVA---GEYG--FWNRILQQVAEPLWHLES 207 (252)
T ss_pred ccC-CHHHHHHHHHHhcCCCcEEEEEeccc---ccch--HHHHHHHHHhchhhheec
Confidence 754 99999999999999999999975321 1222 366644443333455554
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=136.38 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=85.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC--CCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP--YPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp--f~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++..+++... ...+.++|+++.|++.|+++ +.++.+..+|..++| +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 567899999999999988887643 23788999999999998875 345667778888887 78899999999887
Q ss_pred ccccc------------cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWH------------ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~------------~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++++. ++...+|+++.|+|||||.+++.+.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 77652 2467899999999999999999874
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-12 Score=111.90 Aligned_cols=92 Identities=26% Similarity=0.387 Sum_probs=58.2
Q ss_pred EEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCCCC-C-CCCCeeEEEeccccccc
Q 039518 233 LDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQLP-Y-PSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 233 LDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~Lp-f-~d~sFDlV~~s~~l~h~ 305 (617)
||||||+|.++..+++.. ....++++|+|+.+++.|+++ . ...........+.. . ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998875 445889999999999766655 2 12222222222221 1 23599999999988887
Q ss_pred ccchHHHHHHHHHhccCCeEE
Q 039518 306 HANDGILLKEVDRVLRPNGYF 326 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~L 326 (617)
+++..+++.+.++|+|||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 68999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=119.22 Aligned_cols=105 Identities=17% Similarity=0.286 Sum_probs=86.2
Q ss_pred cCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCe
Q 039518 221 TGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSF 293 (617)
Q Consensus 221 ~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sF 293 (617)
..++.+.+|++|||||||.|.++.+++++ ++ .++++++|++|.+.++++ |.+ +.+...|..++ .+.|
T Consensus 65 ~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e~f 138 (283)
T COG2230 65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EEPF 138 (283)
T ss_pred HHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---cccc
Confidence 35678899999999999999999999998 45 567779999999888875 554 55555555444 3559
Q ss_pred eEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 294 EMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 294 DlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|-|++..+++|+. ++...++..++++|+|||.+++-+-
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 9999999999987 4578899999999999999998654
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=114.54 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=95.7
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----C--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----I--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++. . ++.+.+.|+..++ ++||+|++..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~ 127 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMD 127 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhh
Confidence 3467899999999999999998754 6788899999999998762 2 5677888877765 7899999998
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeCCC----------CCCCC-----CChhhHHHHHHHHHHcCceEEEEe
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPA----------YRKDK-----DYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~----------~~~~~-----~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+++|+. ++...++.++.+++++++++.+..... .+... .....-++++++++.+||+++..+
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 888876 346789999999999887776642110 00000 011123458889999999988754
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-10 Score=110.94 Aligned_cols=99 Identities=13% Similarity=0.266 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH----HHhCCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA----LERGIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A----~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
++.++||+|||.|..+.+|+++|. +|+++|.|+..++.+ .++++++.....|+....++ +.||+|++..++.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~ 105 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFM 105 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEec
Confidence 345799999999999999999998 567779998877654 44688888899998887765 6799999876666
Q ss_pred ccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 304 DWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 304 h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.. +....++..+...++|||++++.+
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 655 335678999999999999998854
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=115.31 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=91.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecC-CCCC--CCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALST-KQLP--YPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~-~~Lp--f~d~sFDlV~~s 299 (617)
++.+|||+|||+|.++..+++.... ..++++|+++.+++.|+++ + .++.+..+|+ +.++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 3456999999999999999876433 3788999999999988764 3 3577888888 7776 778899999987
Q ss_pred cccccccc--------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 300 RCRVDWHA--------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 300 ~~l~h~~~--------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
... +|.. ....+++++.++|||||.|+++.+. ......+.+.++..||+..
T Consensus 119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~--------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW--------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC--------HHHHHHHHHHHHhCccccc
Confidence 532 3321 1467899999999999999998642 1123346666777787655
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-10 Score=110.76 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=84.1
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.+|||+|||+|.++..++..... ..++++|.++.+++.++++ +. ++.+..+|+++++ .+++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 567999999999999988765432 3688899999988776543 44 4778888887764 367899999753 2
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. +...+++.+.++|+|||.+++.... .....+..+.+-+...|++.+..
T Consensus 119 --~-~~~~~~~~~~~~LkpgG~lvi~~~~------~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 119 --A-SLNVLLELTLNLLKVGGYFLAYKGK------KYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred --h-CHHHHHHHHHHhcCCCCEEEEEcCC------CcHHHHHHHHHhhhhcCceEeec
Confidence 2 5667889999999999999986431 11111222333333467776653
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=115.35 Aligned_cols=100 Identities=12% Similarity=-0.009 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH-hC----------------CCcEEEEecCCCCCCC-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE-RG----------------IGAMISALSTKQLPYP- 289 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e-rg----------------~~~~~~~~d~~~Lpf~- 289 (617)
++.+|||+|||.|..+.+|+++|. +|+++|+|+.+++.+.+ ++ ..+.+.++|+..++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 445799999999999999999987 57788999999997533 33 3467788888777642
Q ss_pred CCCeeEEEecccccccccc-hHHHHHHHHHhccCCeEEEEEe
Q 039518 290 SSSFEMVHCSRCRVDWHAN-DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+.||.|+-..+++|++.+ ...++..+.++|||||++++.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 4579999988778887733 4669999999999999866653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-10 Score=107.70 Aligned_cols=121 Identities=11% Similarity=0.064 Sum_probs=90.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
+.+|||+|||+|.++..+++++. .+.++|+++.+++.++++ +..+.+..+|....+ .++||+|+++...++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 34699999999999999998865 678889999999988775 455666777765543 458999999866554
Q ss_pred cccc--------------------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 305 WHAN--------------------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 305 ~~~d--------------------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
.... ...++.++.++|+|||.+++..+... . -..+..++++.||......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------~--~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------G--EPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------C--hHHHHHHHHhCCCeEEEEE
Confidence 4311 24579999999999999999864221 0 2347778888899877644
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=125.61 Aligned_cols=102 Identities=22% Similarity=0.314 Sum_probs=82.7
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
+.+.++.+|||||||+|.++..+++. +. .++++|+|+.+++.|+++. ..+.+...|...+ +++||.|++..
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~ 236 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG 236 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC
Confidence 44567889999999999999999875 43 6788899999999999874 3456666666554 47899999988
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++|.. .+...+++++.++|||||++++...
T Consensus 237 ~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 237 MFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred chhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 777764 3467899999999999999999764
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.4e-10 Score=108.96 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC-C-CCCCCCeeEEEeccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ-L-PYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~-L-pf~d~sFDlV~~s~~l~h~ 305 (617)
++.+|||+|||+|.++..+++... ..+.++|+++++++.|+++++ .+..+++.. + ++++++||+|+|+.+++|.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 345699999999999999876532 145788999999999987664 566677654 4 4778899999999887766
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeCCCC-----------------------CCCC--CChhhHHHHHHHHHHcCceEEE
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAPPAY-----------------------RKDK--DYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p~~~-----------------------~~~~--~~~~~W~~le~La~~~gw~~v~ 360 (617)
. ++..+|+++.|++++ .+++.|... +.+. ......+++.+++++.||+++.
T Consensus 89 ~-d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 89 R-NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred c-CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 5 899999999887664 444433210 0000 0111245588899999999887
Q ss_pred E
Q 039518 361 R 361 (617)
Q Consensus 361 ~ 361 (617)
.
T Consensus 165 ~ 165 (194)
T TIGR02081 165 R 165 (194)
T ss_pred E
Confidence 3
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.3e-10 Score=111.20 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=97.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC-CCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP-YPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp-f~d~sFDlV~~s~~l 302 (617)
++.+|||||||+|.++..+++.+. .++++|+++.+++.|+++ +..+.+...+...++ ..+++||+|+++.++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 466799999999999999988764 577889999999888765 444566666665554 345789999999877
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC---------------CCChhhH------HHHHHHHHHcCceEEEE
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD---------------KDYPLIW------DKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~---------------~~~~~~W------~~le~La~~~gw~~v~~ 361 (617)
.+.. ++..+|.++.++|+|||.++++.+...... +.....| .++.++++..||+++..
T Consensus 125 ~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 125 EHVP-DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred hccC-CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 7765 788999999999999999999875321100 0000011 24788899999998865
Q ss_pred e
Q 039518 362 K 362 (617)
Q Consensus 362 ~ 362 (617)
.
T Consensus 204 ~ 204 (233)
T PRK05134 204 T 204 (233)
T ss_pred e
Confidence 4
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=109.26 Aligned_cols=132 Identities=20% Similarity=0.242 Sum_probs=98.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCC-CCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYP-SSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~-d~sFDlV~~s~~ 301 (617)
.+.+|||+|||+|.++..+++.+. .+.++|+++.+++.++++ +. ++.+...++..++.. .++||+|+++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 356799999999999999987764 477889999999888774 33 466777777666544 378999999887
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC---------------CCChh------hHHHHHHHHHHcCceEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD---------------KDYPL------IWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~---------------~~~~~------~W~~le~La~~~gw~~v~ 360 (617)
+++.. ++..++.++.++|+|||.++++.+...... +.... ...++.+++++.||+++.
T Consensus 122 l~~~~-~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 122 LEHVP-DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred HHhCC-CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 76654 889999999999999999999875321100 00000 123588889999999987
Q ss_pred Eee
Q 039518 361 RKI 363 (617)
Q Consensus 361 ~~~ 363 (617)
..+
T Consensus 201 ~~~ 203 (224)
T TIGR01983 201 VKG 203 (224)
T ss_pred eee
Confidence 654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-10 Score=113.49 Aligned_cols=101 Identities=16% Similarity=0.241 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccC----CCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL----DIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~----gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..|++. +.. ..++++|+++.+++.|+++. .++.+.+.+...+++++++||+|+|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLR-LEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCC-cEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 34567999999999998888642 332 37889999999999998873 245666677777777788999999999
Q ss_pred cccccccc-hHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHAN-DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d-~~~~L~el~RvLrPGG~Liis~ 330 (617)
+++|+.++ ...+++++.|+++ |.+++.+
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 88887632 3579999999998 5555543
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=109.94 Aligned_cols=133 Identities=8% Similarity=0.038 Sum_probs=89.6
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEEEecCCCC----CCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMISALSTKQL----PYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~~~d~~~L----pf~d~sFDlV 296 (617)
+.+.++.+|||+|||+|.++..|++... ...+.++|+++.|++.+.++ ..++.+..+|+... +++ ++||+|
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i 145 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVI 145 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEE
Confidence 4566788999999999999999988632 22688889999888755433 13466667776531 223 569999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeCC--CCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP--AYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~--~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
++... .+.....++.++.|+|||||.++++.+- ..+..+. ....+...+.++..||+.+...
T Consensus 146 ~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 146 YQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-KEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred EECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-HHHHHHHHHHHHHcCCeEEEEE
Confidence 85421 1112245689999999999999997542 2222222 2233445688889999988754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-11 Score=117.36 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=98.9
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-C-CCCCCeeEEEeccccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-P-YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-p-f~d~sFDlV~~s~~l~ 303 (617)
..+-.++||+|||||..+..|..+-- .++++|+|++|++.|.++|.--.+.+++...+ + ..++.||+|++..++.
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 33446799999999999999977632 68899999999999999988666666655433 2 3567899999988765
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhh---H----HHHHHHHHHcCceEEEEeee
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLI---W----DKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~---W----~~le~La~~~gw~~v~~~~~ 364 (617)
.. .+.+.++.-+...|+|||.|.+|+....-.......+ + .-+..+++..|++++..++.
T Consensus 200 Yl-G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 200 YL-GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hh-cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 54 4889999999999999999999964221111000000 1 11788899999999986543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-09 Score=113.79 Aligned_cols=125 Identities=17% Similarity=0.223 Sum_probs=84.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----------CCcEEEEecCCCCCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----------IGAMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----------~~~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
++.+|||+|||+|.++..|++++. .++++|+++.|++.|+++. ..+.+...|++.+ +++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEE
Confidence 356899999999999999998864 6788899999999998763 1245556665443 57899999
Q ss_pred ecccccccccch-HHHHHHHHHhccCCeEEEEEeCCCCCC------------CCC-----ChhhHHHHHHHHHHcCceEE
Q 039518 298 CSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAPPAYRK------------DKD-----YPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 298 ~s~~l~h~~~d~-~~~L~el~RvLrPGG~Liis~p~~~~~------------~~~-----~~~~W~~le~La~~~gw~~v 359 (617)
|..+++|+..+. ..+++.+.+ +.+||.++ +..+..+. .+. ....-++++++++..||++.
T Consensus 218 ~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 218 CLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVA 295 (315)
T ss_pred EcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEE
Confidence 999988877433 345666665 45665544 43322110 000 00012458888888999876
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 296 ~ 296 (315)
T PLN02585 296 R 296 (315)
T ss_pred E
Confidence 5
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=114.62 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=79.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
..++.+|||||||+|.++..++++.... .++.+|. +.+++.++++ +. .+.+..+|+.+.++++ +|+|+++
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFC 222 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCC-EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeE
Confidence 4566789999999999999999886543 5677787 5777777654 33 3667788876666553 6999989
Q ss_pred ccccccccc-hHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHAN-DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++|+|.++ ...+|+++++.|+|||.+++.+.
T Consensus 223 ~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 223 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 888888643 36799999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.8e-10 Score=109.10 Aligned_cols=121 Identities=17% Similarity=0.286 Sum_probs=86.5
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC---CCCCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP---YPSSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp---f~d~sFDlV~~s~~ 301 (617)
.+|||||||+|.++..++++.... .+.++|+++.+++.|+++ +. ++.+..+|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~-~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDK-NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 359999999999999999876543 788899999999888654 33 5778888876553 45679999997642
Q ss_pred ccccccch--------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-CceEEE
Q 039518 302 RVDWHAND--------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CWKLIA 360 (617)
Q Consensus 302 l~h~~~d~--------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw~~v~ 360 (617)
.+|.... ..+++++.|+|||||.|++.+.. ......+.+.+... +|+.+.
T Consensus 97 -dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--------~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 -DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--------EPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred -CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--------HHHHHHHHHHHHhCCCeEecc
Confidence 3444221 56899999999999999997632 21233344444444 476654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-10 Score=114.32 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=90.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHH---HHHHHh-CCCcEEEE--ecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQI---QFALER-GIGAMISA--LSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~l---q~A~er-g~~~~~~~--~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.|++|||||||.|.++..|+.+|.. .|.++|.+.... +++++- |....+.. ..++.+|. .++||+|+|..+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 3456999999999999999999875 455556554443 333332 33332222 46788887 789999999998
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-----CC-------Ch---hhHHHHHHHHHHcCceEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-----KD-------YP---LIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-----~~-------~~---~~W~~le~La~~~gw~~v~ 360 (617)
+.|.. +|-..|.++...|+|||.+++.+-...... |. +. -.-..+...++++||+.+.
T Consensus 192 LYHrr-~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 192 LYHRR-SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred hhccC-CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 88866 899999999999999999998643111110 00 00 0123488899999999886
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=98.04 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=75.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..++++... ..++++|+++.+++.++++ +. ++.+...+... ++...++||.|++..
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 34557999999999999999887433 4788999999999988754 22 45666666544 333346899999865
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
... ....+++++.++|+|||++++..
T Consensus 97 ~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 97 SGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 322 34689999999999999999975
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-10 Score=110.61 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=75.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.+|||+|||+|.++..+++++... .++.+|+++.+++.++++ +.. +.+...|... +.++++||+|+|+--++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 3459999999999999999987654 588899999999998774 444 6666666533 23468999999985433
Q ss_pred cccc----chHHHHHHHHHhccCCeEEEEEeC
Q 039518 304 DWHA----NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 304 h~~~----d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.-.. -...++.+..+.|+|||.+++...
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 2221 146689999999999999988653
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.3e-10 Score=108.86 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=74.7
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.++||+|||.|.++..|+.+. -.+..+|+++.+++.|++|- ..+.+.+.++... .|+++||+||++.++..+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCC
Confidence 349999999999999999884 37788899999999999983 3478888877554 4788999999999777765
Q ss_pred c--chHHHHHHHHHhccCCeEEEEEeC
Q 039518 307 A--NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 307 ~--d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+ +...++..+...|+|||.+++...
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 2 356789999999999999999763
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=109.92 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=90.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH-HhCC----------------CcEEEEecCCCCCCC-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL-ERGI----------------GAMISALSTKQLPYP- 289 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~-erg~----------------~~~~~~~d~~~Lpf~- 289 (617)
++.+|||+|||.|..+.+|+++|. .|+++|+++.+++.+. ++++ .+.+.++|+..++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 456799999999999999999987 5778899999999763 3433 356677888777533
Q ss_pred CCCeeEEEeccccccccc-chHHHHHHHHHhccCCeEEEEEe---CCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 290 SSSFEMVHCSRCRVDWHA-NDGILLKEVDRVLRPNGYFVYSA---PPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~---p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
...||+|+-..+++|++. ....++..+.++|+|||.+++.+ ++.....+.....-+++.++.. -+|++....
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~~~ 189 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIELLE 189 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEEee
Confidence 258999998877788763 35779999999999999755432 1111122222222344665553 236666543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=106.63 Aligned_cols=128 Identities=21% Similarity=0.301 Sum_probs=87.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++.+. .++++|+++.+++.|+++ +. .+.+..+| ++..+++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcc
Confidence 3456799999999999999998765 478899999999999876 22 35566665 444568899999998
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeCCC-----------CCCCCC-----ChhhHHHHHHHHHHcCceEEEE
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPA-----------YRKDKD-----YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~-----------~~~~~~-----~~~~W~~le~La~~~gw~~v~~ 361 (617)
+++|+. ++...+++++.+++++++.+.+ .+.. .+.... ....-..+.++++..||++...
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence 888876 3456788899888765554433 2210 000000 0001234777888888887764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=104.06 Aligned_cols=120 Identities=12% Similarity=0.053 Sum_probs=88.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..++++... ..++++|+++.+++.|+++ +. ++.+..++.. .++ .++||+|++...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence 35667999999999999999887543 3788899999999988764 32 3566666553 233 357999998753
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. .....++.++.++|+|||++++..... ....++.+++++.||+.+..
T Consensus 107 ~----~~~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 107 G----GNLTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred c----cCHHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCcceE
Confidence 2 245678999999999999999865311 11456778899999986653
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-10 Score=118.93 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=76.8
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
.+|||+|||+|.++..++++... ..++++|+++.+++.|+++ ++...+...|... ..++.||+|+|+..+|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 36999999999999999987543 3688999999999988764 4555565555433 235789999998765542
Q ss_pred c----cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 306 H----ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 306 ~----~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. .....++.++.+.|+|||.|+++..
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 2357899999999999999999875
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-09 Score=105.87 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.++.+|||+|||+|.++..+++.+. ..++++|+++.+++.++++ +.++.+...|+.. .+++++||+|+++.-.
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPY 111 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCC
Confidence 4567899999999999999987653 2678899999999877764 4556677777654 2456789999987422
Q ss_pred ccccc--------------------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 303 VDWHA--------------------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 303 ~h~~~--------------------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.+-.. ....++.++.++|||||.+++...... . ..++.+.++..||....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------~--~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------G--VERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc------C--HHHHHHHHHHCCCCeEE
Confidence 21111 134578889999999999998754321 1 34566667778886444
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-09 Score=105.83 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=83.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||+|||+|.++..+++.+.. .+.++|+++.+++.|+++.....+. +...++..+.+||+|+++... .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~~~~fD~Vvani~~----~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE--LNVYLPQGDLKADVIVANILA----N 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccCCCCcCEEEEcCcH----H
Confidence 5667999999999999988877654 4788999999999988762111110 001112222379999986421 2
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
....++.++.++|||||++++++.... ..+.+...++..||+++....
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~--------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEE--------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHh--------hHHHHHHHHHHCCCEEEEEEE
Confidence 345789999999999999999874211 134577888899999876443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-09 Score=111.14 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=82.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++..+++.+.. .+.++|+++.+++.|+++ ++. +.+...+ ..+..+++||+|+++..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL 234 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecC
Confidence 4567999999999999988877643 688899999999999876 332 2222222 23345678999998742
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. .....++.++.++|||||++++++... .....+.+.+++. |+.+..
T Consensus 235 ~----~~l~~ll~~~~~~LkpgG~li~sgi~~--------~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 235 A----EVIKELYPQFSRLVKPGGWLILSGILE--------TQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred H----HHHHHHHHHHHHHcCCCcEEEEEeCcH--------hHHHHHHHHHHcc-CceeeE
Confidence 2 234578999999999999999987421 1134466666665 776653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-10 Score=113.29 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=80.9
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEE------ecCCCCCCCCCCeeEEEecccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISA------LSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~------~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.++|+|||+|.-+..+++..- .|.++|++++|++.|++......... .+...|--.++|.|+|+|..|+ |
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-H 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH-H
Confidence 399999999966666666532 66788999999999987643222211 1223333348999999999875 6
Q ss_pred cccchHHHHHHHHHhccCCe-EEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 305 WHANDGILLKEVDRVLRPNG-YFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG-~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
|- |.+.+++++.|+||+.| .+.+-.- .+....|.+...+..+.+++
T Consensus 112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y------~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 112 WF-DLERFYKEAYRVLRKDGGLIAVWNY------NDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hh-chHHHHHHHHHHcCCCCCEEEEEEc------cCCCcCCHHHHHHHHHHhhc
Confidence 77 79999999999999877 5555331 11223366777777777766
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=107.93 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlV~~ 298 (617)
.++.+|||+|||+|.++..++++......+.++|+++ + ....++.+..+|+.+.+ +.+++||+|+|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 4567899999999999999988743223677888876 2 11234778888887753 56789999998
Q ss_pred cccccccccch-----------HHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHAND-----------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~-----------~~~L~el~RvLrPGG~Liis~ 330 (617)
+.+. ++..++ ..+|.++.++|+|||.|++..
T Consensus 124 ~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 124 DMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 7533 333221 458999999999999999965
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=107.09 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|..+..+++.......+.++|+++.+++.|+++ +. .+.+..+|........++||+|++..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence 4567899999999999988876521112678889999999888764 33 26777788765544567899999886
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+..+.. .++.+.|+|||.+++..
T Consensus 151 ~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchhh-------HHHHHhcCcCcEEEEEE
Confidence 554432 47889999999999864
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=98.74 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=88.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC---cEEEEecCCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG---AMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~---~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
++.+|||+|||+|.++..+++++. .++++|+++.+++.++++ +.. +.+...|... ++.+++||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 456799999999999999998843 677889999999888664 332 5666666543 34556899999875
Q ss_pred cccccc--------------------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 301 CRVDWH--------------------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 301 ~l~h~~--------------------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
...+.. .....+++++.++|+|||.+++..+... . -+.+.+++.+.||++..
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~------~--~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT------G--EDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC------C--HHHHHHHHHHCCCeeee
Confidence 432210 0134579999999999999998765321 1 24578888899998765
Q ss_pred E
Q 039518 361 R 361 (617)
Q Consensus 361 ~ 361 (617)
.
T Consensus 171 ~ 171 (188)
T PRK14968 171 V 171 (188)
T ss_pred e
Confidence 3
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=116.84 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=74.4
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC----CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI----GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~----~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.+|||+|||+|.++..+++++... .++++|+++.+++.|+++ +. .+.+...|... .+++++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~-~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 469999999999999999886543 788999999999999875 22 34555555422 124568999999865
Q ss_pred ccccc----cchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWH----ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~----~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++.-. ....+++.++.++|+|||.|+++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 54321 123568999999999999999986
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.1e-09 Score=107.81 Aligned_cols=136 Identities=10% Similarity=0.030 Sum_probs=88.6
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHH----HHHHHHHhCCCcEEEEecCCC---CCCCCCCee
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHEN----QIQFALERGIGAMISALSTKQ---LPYPSSSFE 294 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~----~lq~A~erg~~~~~~~~d~~~---Lpf~d~sFD 294 (617)
..+.+.++.+|||+|||+|.++.++++.--..-.|.++|+++. +++.|.++ .++.....|+.. +..+..+||
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCC
Confidence 3456788899999999999999999987311125777899975 44555544 456677777643 222345899
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhHHHHHHHHHHcCceEEEE
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+|++... .+++...++.++.++|||||+|+|......-+. +.....+.+-.+.+++.||+.+..
T Consensus 205 vV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~ 269 (293)
T PTZ00146 205 VIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQ 269 (293)
T ss_pred EEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 9998752 233455677899999999999999643221111 111111222136678889997764
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.1e-10 Score=98.80 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=78.8
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCC--CCCCCeeEEEecc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLP--YPSSSFEMVHCSR 300 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lp--f~d~sFDlV~~s~ 300 (617)
|.+|||+|||+|.++..+++.+ ...+.++|+++..++.|+.+ + .++.+.++|...+. +++++||+|+++-
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 4579999999999999999887 34788999999999999876 2 24788888876664 6789999999985
Q ss_pred ccccccc-------chHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHA-------NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~-------d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-...... ....+++++.++|||||.+++..|
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4443211 135689999999999999999765
|
... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.1e-09 Score=103.51 Aligned_cols=124 Identities=16% Similarity=0.169 Sum_probs=88.2
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lpf~d~sFDlV 296 (617)
+.+.++.+|||+|||+|.++..++........+.++|+++.+++.|+++ ++ ++.+..+|..+ ++..++.||.|
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence 3456778899999999999998876421122678889999999988765 42 45666677654 33334689999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
++.. . ..++..++.++.++|+|||++++..... ....++...+++.||...
T Consensus 116 ~~~~---~-~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 116 FIGG---G-SEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGFNLE 166 (198)
T ss_pred EECC---C-cccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCCCeE
Confidence 9753 1 2367889999999999999999865311 114557777788898543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.1e-09 Score=108.43 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=93.9
Q ss_pred CcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC
Q 039518 200 THFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG 275 (617)
Q Consensus 200 t~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~ 275 (617)
..|..|...-.....+++... ..++.+|||+|||+|.++...++.|.. .+.++|+++.+++.|+++ ++.
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~-----~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~ 210 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKY-----VKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVE 210 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHH-----SSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-T
T ss_pred CcccCCCCHHHHHHHHHHHHh-----ccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCC
Confidence 445555543333333343221 234567999999999999999988875 578889999999988876 555
Q ss_pred cEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC
Q 039518 276 AMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC 355 (617)
Q Consensus 276 ~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~g 355 (617)
..+.+.... ....+.||+|+++-.. .-...++..+.++|+|||++++|+-.. . ..+.+.+.+++ |
T Consensus 211 ~~~~v~~~~--~~~~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSGIl~------~--~~~~v~~a~~~-g 275 (295)
T PF06325_consen 211 DRIEVSLSE--DLVEGKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSGILE------E--QEDEVIEAYKQ-G 275 (295)
T ss_dssp TCEEESCTS--CTCCS-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEEEEG------G--GHHHHHHHHHT-T
T ss_pred eeEEEEEec--ccccccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEccccH------H--HHHHHHHHHHC-C
Confidence 555443222 2345889999987421 124568888999999999999998411 1 14557777766 9
Q ss_pred ceEEEEeee
Q 039518 356 WKLIARKIQ 364 (617)
Q Consensus 356 w~~v~~~~~ 364 (617)
|+++....+
T Consensus 276 ~~~~~~~~~ 284 (295)
T PF06325_consen 276 FELVEEREE 284 (295)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 998875543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.9e-09 Score=108.03 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCC-CCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPS-SSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d-~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++...++.|.. .+.++|+++.+++.|+++ +++..........+..+. +.||+|+++- +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 5667999999999999999999875 678889999999999876 443211111112222333 5899999874 1
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
.+-...+..++.+.|||||++++|+--. ++ -+.+.+.+.+.||+++....
T Consensus 239 ---A~vl~~La~~~~~~lkpgg~lIlSGIl~-----~q---~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 239 ---AEVLVELAPDIKRLLKPGGRLILSGILE-----DQ---AESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred ---HHHHHHHHHHHHHHcCCCceEEEEeehH-----hH---HHHHHHHHHhCCCeEeEEEe
Confidence 2224578999999999999999998411 11 23466677788999887543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=112.84 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=74.7
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCc-EEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGA-MISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~-~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
+|||+|||.|.++..|++.... ..++-+|++..+++.|+++ ++.. .+...+. -.+..+ +||+|+|+--+|.-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-~~~v~~-kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNL-YEPVEG-KFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-cccccc-cccEEEeCCCccCC
Confidence 6999999999999999999874 3888899999999999875 4444 3444333 223334 89999998655433
Q ss_pred ccch----HHHHHHHHHhccCCeEEEEEeC
Q 039518 306 HAND----GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 306 ~~d~----~~~L~el~RvLrPGG~Liis~p 331 (617)
..-. .+++.+..+.|++||.|+|+..
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 2222 3789999999999999999874
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=102.14 Aligned_cols=121 Identities=15% Similarity=0.232 Sum_probs=87.8
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.+|||+|||+|.++..+++.... ..+.++|+++.+++.|+++ +.. +.+..+|+.. ++++++||+|+++.....
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 46999999999999999886432 2788899999999988765 443 6777777654 456789999998632221
Q ss_pred ------ccc-------------------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 305 ------WHA-------------------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 305 ------~~~-------------------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
+.. ....++.++.++|+|||.+++.... .. -+.+.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-------~~--~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-------DQ--GEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-------cH--HHHHHHHHHhCCCCce
Confidence 110 0135789999999999999997531 11 2447888888999876
Q ss_pred EE
Q 039518 360 AR 361 (617)
Q Consensus 360 ~~ 361 (617)
..
T Consensus 238 ~~ 239 (251)
T TIGR03534 238 ET 239 (251)
T ss_pred EE
Confidence 64
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-09 Score=103.78 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=88.8
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC-CCCCCCCCCeeEEEecccccccc----
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALST-KQLPYPSSSFEMVHCSRCRVDWH---- 306 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~-~~Lpf~d~sFDlV~~s~~l~h~~---- 306 (617)
|||||||+|..+..|.+.|. -..++|+|+.|++.|.++-+...+..+|+ +.+||..++||.|++.. .+.|.
T Consensus 54 iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQWLcnA~ 129 (270)
T KOG1541|consen 54 ILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQWLCNAD 129 (270)
T ss_pred EEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEee-eeeeecccC
Confidence 99999999999999988884 46678999999999998766666666665 88999999999999764 33554
Q ss_pred ---cch----HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 307 ---AND----GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 307 ---~d~----~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
.+| ..++..++.+|++|+..++.--+ ..+.. -+.+.+-+..+||.
T Consensus 130 ~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp----en~~q--~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 130 KSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP----ENEAQ--IDMIMQQAMKAGFG 181 (270)
T ss_pred ccccChHHHHHHHhhhhhhhhccCceeEEEecc----cchHH--HHHHHHHHHhhccC
Confidence 123 23678899999999999996422 12222 45577777788875
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-09 Score=111.91 Aligned_cols=120 Identities=22% Similarity=0.209 Sum_probs=90.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..++..+. .+.++|+++.+++.|+++ +.. +.+..+|+.++|+++++||+|+++.-
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 5667899999999999888776654 577889999999887765 433 57788899999988889999998621
Q ss_pred cc-------ccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RV-------DWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~-------h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.. +.. +....++.++.|+|+|||++++..|... .+..+++..|| ++..
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VVKR 313 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-chhe
Confidence 11 001 1146799999999999999999886321 25567889999 6653
|
This family is found exclusively in the Archaea. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-08 Score=103.26 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=105.8
Q ss_pred cCCCCCcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC
Q 039518 195 FPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI 274 (617)
Q Consensus 195 Fpgggt~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~ 274 (617)
+-|.|.+|--..+++.+.+..--..... -....++||||+|.|..+..|+...- .+...+.|..|...-+++|.
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~~~~~~~~~---~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~kg~ 137 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLRISGFSWNP---DWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKKGF 137 (265)
T ss_pred hhcCCcEEEecHHHHHHHhhhhccCCCC---cccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhCCC
Confidence 4578888877777665543311000011 11345699999999999999987533 56778999999888888886
Q ss_pred CcEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe--CC-------C-CCCCC-----C
Q 039518 275 GAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA--PP-------A-YRKDK-----D 339 (617)
Q Consensus 275 ~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~--p~-------~-~~~~~-----~ 339 (617)
.+ .+..+..-.+.+||+|.|.+++-.. .+|..+|+++++.|+|+|.++++. |- . .+..| -
T Consensus 138 ~v----l~~~~w~~~~~~fDvIscLNvLDRc-~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~ 212 (265)
T PF05219_consen 138 TV----LDIDDWQQTDFKFDVISCLNVLDRC-DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV 212 (265)
T ss_pred eE----EehhhhhccCCceEEEeehhhhhcc-CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC
Confidence 43 2333333335689999999877654 489999999999999999999874 10 0 11111 1
Q ss_pred ChhhHHH----HHHHHHHcCceEEE
Q 039518 340 YPLIWDK----LVNLTTAMCWKLIA 360 (617)
Q Consensus 340 ~~~~W~~----le~La~~~gw~~v~ 360 (617)
.+..|++ +.++++.+||+++.
T Consensus 213 ~g~~~E~~v~~l~~v~~p~GF~v~~ 237 (265)
T PF05219_consen 213 KGATFEEQVSSLVNVFEPAGFEVER 237 (265)
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 1234555 44888999999887
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.3e-09 Score=99.34 Aligned_cols=126 Identities=20% Similarity=0.253 Sum_probs=93.2
Q ss_pred cCCCC-eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH----hCCC--cEEEEecCCCCCCCCCCeeEEEe
Q 039518 226 SAGVF-QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE----RGIG--AMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~-rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e----rg~~--~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
+...+ +|||+|||.|.+...|++.+... .++++|.++.+++.|+. ++.+ +.+.+.|+..-.+..+.||+|+-
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEee
Confidence 33333 89999999999999999998764 48999999999988764 3555 78889998776777788888874
Q ss_pred ccccccc-------ccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 299 SRCRVDW-------HANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 299 s~~l~h~-------~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
-..+-.+ ...+..++..+.++|+|||.|+|+.-+.. -+++....+..+|+.+..
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---------~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---------KDELVEEFENFNFEYLST 203 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc---------HHHHHHHHhcCCeEEEEe
Confidence 3222111 12235689999999999999999875321 455777777778877663
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=105.30 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=74.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
+.++.+|||||||+|.++..+++.......++++|+++.+++.|+++ +. ++.+..+|......+.++||+|++..
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 34667899999999999988887632223678889999999998875 33 47788888766555678899999875
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...+ ....+.+.|||||.+++..
T Consensus 154 ~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred Cccc-------chHHHHHhhCCCcEEEEEE
Confidence 4432 2346677899999999854
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.9e-09 Score=99.39 Aligned_cols=74 Identities=19% Similarity=0.115 Sum_probs=64.1
Q ss_pred eecCCcHHHHHHHHHhC--------CCcEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEE
Q 039518 257 APKDGHENQIQFALERG--------IGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 257 ~~iDis~~~lq~A~erg--------~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Lii 328 (617)
+++|+|+.|++.|+++. .++.+.++|++++|+++++||+|+++.+++++. |+..+|+|++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEE
Confidence 36799999999997652 247889999999999999999999998776665 899999999999999999998
Q ss_pred EeC
Q 039518 329 SAP 331 (617)
Q Consensus 329 s~p 331 (617)
.+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 764
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=104.41 Aligned_cols=131 Identities=14% Similarity=0.214 Sum_probs=94.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCC--CCCCCeeEEEecc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLP--YPSSSFEMVHCSR 300 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lp--f~d~sFDlV~~s~ 300 (617)
..+|||+|||+|..+..++++... ..++++|+.+.+.+.|++. + ..+.+...|+.++. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 567999999999999999998443 4888999999999999876 1 24677788876664 3345799999983
Q ss_pred cccc-----------------cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 301 CRVD-----------------WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 301 ~l~h-----------------~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
-... ...+.+.+++...++|||||++.++.++. ...++..++++.+|....
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------rl~ei~~~l~~~~~~~k~--- 191 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------RLAEIIELLKSYNLEPKR--- 191 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------HHHHHHHHHHhcCCCceE---
Confidence 2211 11235678999999999999999987632 144567778887877554
Q ss_pred eeEEEeecc
Q 039518 364 QTAIWIKEE 372 (617)
Q Consensus 364 ~~~IwqKp~ 372 (617)
...|+.++.
T Consensus 192 i~~V~p~~~ 200 (248)
T COG4123 192 IQFVYPKIG 200 (248)
T ss_pred EEEecCCCC
Confidence 334444443
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-09 Score=108.28 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCcHHHHH-hccCCCcEEEeeecCCcHHHHHHHHHhC-------CCcEEEEecCCCCCCCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAF-LLPLDIQTMSFAPKDGHENQIQFALERG-------IGAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~-La~~gv~~v~v~~iDis~~~lq~A~erg-------~~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
++.+|||||||.|.++.. ++........++++|+++++++.|++.. ..+.|..+|+.+++...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 557799999997755443 3333222337889999999999998753 24788888876654335789999998
Q ss_pred ccccccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 300 RCRVDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 300 ~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++++|. +++..++..+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 688999999999999999999975
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.7e-09 Score=103.13 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=73.6
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
+.++.+|||||||+|.++..|++.......+.++|+++.+++.|+++ +. ++.+..+|........++||+|++..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 34667899999999999999988743222577889999999988875 33 46777778765444456899999775
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...+ +...+.+.|+|||++++..
T Consensus 155 ~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 155 AGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred Cccc-------ccHHHHHhcCcCcEEEEEE
Confidence 4322 3456789999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=107.91 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------CCCcEEEEecCCC-CCCCCC----CeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------GIGAMISALSTKQ-LPYPSS----SFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------g~~~~~~~~d~~~-Lpf~d~----sFDlV 296 (617)
++.+|||+|||+|..+..|++.......++++|+|++|++.|.++ ++++....+|+.+ ++++.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 345699999999999999988743234788999999999988775 2345566788765 444433 23344
Q ss_pred Eecccccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++...+.++. ++...+|++++++|+|||.|++...
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4444445544 3456789999999999999999753
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=108.52 Aligned_cols=99 Identities=21% Similarity=0.332 Sum_probs=78.2
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCC--CCCCCCeeEEEecccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQL--PYPSSSFEMVHCSRCR 302 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~L--pf~d~sFDlV~~s~~l 302 (617)
..+||||||+|.++..++.+.... .+.++|++..+++.|.++ ++ ++.+..+|+..+ .+++++||.|++++ -
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~-~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-P 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK-LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-P 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC-CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-C
Confidence 359999999999999999886543 788889999998777654 43 467777887554 47889999999764 3
Q ss_pred cccccch------HHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWHAND------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~~d~------~~~L~el~RvLrPGG~Liis~ 330 (617)
.+|.... ..++.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4555332 578999999999999999976
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=84.71 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=75.1
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCCcEEEEecCCCCCC-CCCCeeEEEecccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIGAMISALSTKQLPY-PSSSFEMVHCSRCRVD 304 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~~~~~~~d~~~Lpf-~d~sFDlV~~s~~l~h 304 (617)
++||+|||+|.++..+++.. ...+.++|+++.+++.+++. ..+..+...+..+... ..++||+|+++.++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 38999999999999998732 33778889999998887721 2245666667655543 5678999999886655
Q ss_pred cccchHHHHHHHHHhccCCeEEEEE
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
+......++..+.+.|+|||.++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3557888999999999999999985
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.9e-08 Score=105.89 Aligned_cols=125 Identities=10% Similarity=0.057 Sum_probs=87.7
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCC-CCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYP-SSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~-d~sFDlV~~s~~l~ 303 (617)
+.+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +.++.+..+|.....++ .++||+|+|+--.+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 347999999999999998865332 2678899999999998875 45677778886443332 45799999974322
Q ss_pred ccc--------------------cc----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 304 DWH--------------------AN----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 304 h~~--------------------~d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
.-. ++ ...++.++.+.|+|||.+++.... .. -+.+.++++..||..+
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~------~Q---~e~V~~ll~~~Gf~~v 401 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF------DQ---GAAVRGVLAENGFSGV 401 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc------cH---HHHHHHHHHHCCCcEE
Confidence 110 01 134677778899999999886531 11 3458888888999876
Q ss_pred EEee
Q 039518 360 ARKI 363 (617)
Q Consensus 360 ~~~~ 363 (617)
....
T Consensus 402 ~v~k 405 (423)
T PRK14966 402 ETLP 405 (423)
T ss_pred EEEE
Confidence 6443
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-08 Score=99.70 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=86.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-----CCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG-----IGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg-----~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++..++..... ..++++|+++.+++.|+++. .++.+..+|... ++++++||+|+++.-.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCc
Confidence 4567999999999999999887532 37888999999999998762 246677777633 2335789999986322
Q ss_pred ccc------c-------------------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 303 VDW------H-------------------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 303 ~h~------~-------------------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
... . +....++.++.++|+|||++++... + .. -+.+.++++..||.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~---~~---~~~~~~~l~~~gf~ 256 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---Y---DQ---GEAVRALLAAAGFA 256 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---c---hH---HHHHHHHHHhCCCc
Confidence 110 0 1124578888899999999999652 1 11 23477788888987
Q ss_pred EEEE
Q 039518 358 LIAR 361 (617)
Q Consensus 358 ~v~~ 361 (617)
.+..
T Consensus 257 ~v~~ 260 (275)
T PRK09328 257 DVET 260 (275)
T ss_pred eeEE
Confidence 5543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-08 Score=97.79 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlV~~ 298 (617)
.++.+|||+|||+|.++..++++......+.++|+++.+ ...++.+..+|+.+.+ +++++||+|++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 567789999999999999888764322357788888754 1234566677765542 45678999998
Q ss_pred ccccc---cccc-------chHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRV---DWHA-------NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~---h~~~-------d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+.+ +|.. +...++.++.++|+|||.+++..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 53211 1111 13678999999999999999965
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-08 Score=98.94 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=83.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH-----------------hCCCcEEEEecCCCCCCC-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE-----------------RGIGAMISALSTKQLPYP- 289 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e-----------------rg~~~~~~~~d~~~Lpf~- 289 (617)
++.+||+.|||.|.-+.+|+++|. +|+++|+|+.+++.+.+ ++..+.+.++|+.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 456899999999999999999998 46778999999998755 245678899999888642
Q ss_pred --CCCeeEEEecccccccccc-hHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 --SSSFEMVHCSRCRVDWHAN-DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 --d~sFDlV~~s~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p 331 (617)
.+.||+|+-..++++++++ ...+.+.+.++|+|||.+++..-
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2679999987778887744 56799999999999999888753
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=99.44 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=85.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..++++... ..++++|+++.+++.|+++ +. ++.+..+|+.. ++++++||+|+++--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 356999999999999999986432 2678899999999988875 44 36677777632 2345689999986211
Q ss_pred c-------------ccc-----------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceE
Q 039518 303 V-------------DWH-----------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKL 358 (617)
Q Consensus 303 ~-------------h~~-----------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~ 358 (617)
. +.+ .....++.++.++|+|||++++.... . ++.+.++....+|..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--------~--~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--------S--MEALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--------C--HHHHHHHHHhCCCce
Confidence 1 000 01245789999999999999997641 1 446778888877765
Q ss_pred EE
Q 039518 359 IA 360 (617)
Q Consensus 359 v~ 360 (617)
+.
T Consensus 270 ~~ 271 (284)
T TIGR03533 270 LE 271 (284)
T ss_pred ee
Confidence 54
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-08 Score=106.79 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=87.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC--CCCCCeeEEEe-
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP--YPSSSFEMVHC- 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp--f~d~sFDlV~~- 298 (617)
..++.+|||+|||+|..+..++++... ..++++|+++.+++.++++ |..+.+..+|+..++ ++.++||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 356778999999999999999887532 3688899999999888765 556677788877654 34678999994
Q ss_pred ---cccc-------cccccc----------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-Cce
Q 039518 299 ---SRCR-------VDWHAN----------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CWK 357 (617)
Q Consensus 299 ---s~~l-------~h~~~d----------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw~ 357 (617)
+... ..|... ...+|.++.++|||||.+++++-.......+ ..+..++++. +++
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene-----~~v~~~l~~~~~~~ 395 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENE-----QQIKAFLARHPDAE 395 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCH-----HHHHHHHHhCCCCE
Confidence 3211 011111 1368999999999999999998543332222 2355555543 454
Q ss_pred EE
Q 039518 358 LI 359 (617)
Q Consensus 358 ~v 359 (617)
.+
T Consensus 396 ~~ 397 (427)
T PRK10901 396 LL 397 (427)
T ss_pred Ee
Confidence 43
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=99.16 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=84.1
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEecccc-
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSRCR- 302 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~l- 302 (617)
.+|||+|||+|.++..++..... ..++++|+++.+++.|+++ +.. +.+..+|... ++++++||+|+++--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 47999999999999999886532 2688899999999988875 432 6777777643 3445589999986211
Q ss_pred ------------cccc-----------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHH-HcCceE
Q 039518 303 ------------VDWH-----------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTT-AMCWKL 358 (617)
Q Consensus 303 ------------~h~~-----------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~-~~gw~~ 358 (617)
.|.+ .....++.++.+.|+|||++++.... .. -..+.++.. ..+|..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~------~q---~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN------WQ---QKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc------cH---HHHHHHHHHhcCCCce
Confidence 1111 02346789999999999999997641 11 224666666 467865
Q ss_pred EEE
Q 039518 359 IAR 361 (617)
Q Consensus 359 v~~ 361 (617)
+..
T Consensus 265 ~~~ 267 (284)
T TIGR00536 265 VEN 267 (284)
T ss_pred eEE
Confidence 543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-07 Score=93.49 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=95.2
Q ss_pred hhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH----HHhCCCcE--EE
Q 039518 206 APEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA----LERGIGAM--IS 279 (617)
Q Consensus 206 a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A----~erg~~~~--~~ 279 (617)
.+.+.+.|.++++.... +|||||||||..+.+++++-.. +...+.|.++....-. .+.+.+.. -.
T Consensus 11 k~pIl~vL~~~l~~~~~--------~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~ 81 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGT--------RVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL 81 (204)
T ss_pred HhHHHHHHHHHhCccCc--------eEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCe
Confidence 34555666666643222 4999999999999999987654 3678888887774322 23232210 11
Q ss_pred EecCCCC--CC------CCCCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCC-------------
Q 039518 280 ALSTKQL--PY------PSSSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKD------------- 337 (617)
Q Consensus 280 ~~d~~~L--pf------~d~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~------------- 337 (617)
..|+..- |. ..++||+|+|.+++|-.+ +.-+.+++.+.++|+|||.|++-+|-.+.-.
T Consensus 82 ~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sL 161 (204)
T PF06080_consen 82 ALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASL 161 (204)
T ss_pred EeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHH
Confidence 2333332 22 356899999998654333 2346689999999999999999988432211
Q ss_pred -----CCChhhHHHHHHHHHHcCceEEEE
Q 039518 338 -----KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 338 -----~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
...-+..+.+.+++++.|++....
T Consensus 162 r~rdp~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 162 RSRDPEWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred hcCCCCcCccCHHHHHHHHHHCCCccCcc
Confidence 111123445999999999987764
|
The function of this family is unknown. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.1e-08 Score=95.72 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=70.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
..++.+|||+|||+|.++..|++... .+.++|+++.+++.|+++ +. ++.+..+|......+.++||+|++..
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEcc
Confidence 35667899999999999988877643 577889999999888775 33 36777777543222347899999875
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...+ +..++.+.|+|||.+++..
T Consensus 153 ~~~~-------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 153 AAPE-------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred Cchh-------hhHHHHHhcCCCcEEEEEE
Confidence 4332 3456789999999999975
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=97.79 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=91.1
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
+.+|||+|||+|.++..++.+... ..++++|+++.+++.|+++..++.+..+|+..+. .+++||+|+++-.+.+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCch
Confidence 346999999999999888775321 3788899999999999987666888888887765 34689999998766653311
Q ss_pred -------------------hHHHHHHHHHhccCCeEEEEEe--CCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 309 -------------------DGILLKEVDRVLRPNGYFVYSA--PPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 309 -------------------~~~~L~el~RvLrPGG~Liis~--p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
....+..+.++|+|+|.+.+.- -+.| +..-. -++..++++..||....
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y-~~sl~---~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY-DGTMK---SNKYLKWSKQTGLVTYA 211 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc-cccCC---HHHHHHHHHhcCcEecC
Confidence 2456788889999999776642 1222 22222 34588899999997654
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-08 Score=96.26 Aligned_cols=111 Identities=18% Similarity=0.280 Sum_probs=70.8
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccch
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAND 309 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~ 309 (617)
..|-|+|||.+.++..+. .+..+.++ |+... +-.+...|+..+|+++++.|++++...++ ..|.
T Consensus 74 ~viaD~GCGdA~la~~~~-~~~~V~Sf---DLva~----------n~~Vtacdia~vPL~~~svDv~VfcLSLM--GTn~ 137 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVP-NKHKVHSF---DLVAP----------NPRVTACDIANVPLEDESVDVAVFCLSLM--GTNW 137 (219)
T ss_dssp S-EEEES-TT-HHHHH---S---EEEE---ESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS-H
T ss_pred EEEEECCCchHHHHHhcc-cCceEEEe---eccCC----------CCCEEEecCccCcCCCCceeEEEEEhhhh--CCCc
Confidence 459999999999997764 34444455 43221 23467789999999999999999865543 3588
Q ss_pred HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 310 GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 310 ~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
..+|.|+.|+|||||.|+|+....... .-+.+.+.++.+||+.....
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf~------~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRFE------NVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG-S-------HHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHheeccCcEEEEEEecccCc------CHHHHHHHHHHCCCeEEecc
Confidence 999999999999999999987422221 13557888999999998754
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.8e-08 Score=104.30 Aligned_cols=102 Identities=28% Similarity=0.355 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------------CCcEEEEecCCC------C
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------------IGAMISALSTKQ------L 286 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------------~~~~~~~~d~~~------L 286 (617)
++.+|||+|||-|....-....++. .+.++|++...++.|++|- ..+.+..+|... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 6788999999998877766666655 6788999999999999874 234556665422 2
Q ss_pred CCCCCCeeEEEecccccccccch---HHHHHHHHHhccCCeEEEEEeC
Q 039518 287 PYPSSSFEMVHCSRCRVDWHAND---GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 287 pf~d~sFDlV~~s~~l~h~~~d~---~~~L~el~RvLrPGG~Liis~p 331 (617)
+.....||+|-|.+++|+.-++. ..+|..+...|+|||+|+.++|
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22335999999999887766443 4589999999999999999987
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=94.87 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=91.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-----CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-----GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-----~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
...++||.|+|.|.++..|+-.-.. .|.-+|..+..++.|++.-. ...+....++++..+.+.||+|.+..|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4567999999999999988766555 45557999999999996522 2456666777776556799999999999
Q ss_pred cccc-cchHHHHHHHHHhccCCeEEEEEeCCCC-----CCCCCC--hhhHHHHHHHHHHcCceEEEEeee
Q 039518 303 VDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAY-----RKDKDY--PLIWDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~-----~~~~~~--~~~W~~le~La~~~gw~~v~~~~~ 364 (617)
.|.+ ++...+|+.+...|+|||.+++-..... +...+. .+.-+.+.++.+++|++++..+.|
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 9998 4567899999999999999999653211 111121 133455999999999999987655
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=93.76 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..+++.... ..++++|+++.+++.++++ +. ++.+..+|+.. ++.....+|.|+..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~- 116 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE- 116 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE-
Confidence 45667999999999999988765322 3788899999999988764 33 35666666533 22222346766532
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
...+...++.++.++|+|||++++..+
T Consensus 117 ----~~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 117 ----GGRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----CCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 123567899999999999999999874
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=104.99 Aligned_cols=127 Identities=15% Similarity=0.180 Sum_probs=87.0
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC----CCCCCeeEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP----YPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp----f~d~sFDlV 296 (617)
..+|.+|||+|||+|..+..+++.......++++|+++.+++.++++ |. ++.+...|+..++ +..++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45677899999999999999987622222678889999999888765 54 4677778877765 446789999
Q ss_pred Eec----c--ccccccc--------c-------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-
Q 039518 297 HCS----R--CRVDWHA--------N-------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM- 354 (617)
Q Consensus 297 ~~s----~--~l~h~~~--------d-------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~- 354 (617)
++. . ++.+.++ + ...+|.++.++|||||+++.++-..+....+ ..+..++++.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene-----~~v~~~l~~~~ 404 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENE-----AQIEQFLARHP 404 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHH-----HHHHHHHHhCC
Confidence 952 1 1111110 0 2467999999999999999987544322221 2366666654
Q ss_pred Cce
Q 039518 355 CWK 357 (617)
Q Consensus 355 gw~ 357 (617)
+|+
T Consensus 405 ~~~ 407 (434)
T PRK14901 405 DWK 407 (434)
T ss_pred CcE
Confidence 455
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-08 Score=106.02 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=85.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEe--
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHC-- 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~-- 298 (617)
..+|.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+ ++.+..+|+..++ ++++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 45677899999999999888876421122678889999999888765 54 3677777877665 5678999994
Q ss_pred --ccccc-------ccccc----------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-CceE
Q 039518 299 --SRCRV-------DWHAN----------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CWKL 358 (617)
Q Consensus 299 --s~~l~-------h~~~d----------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw~~ 358 (617)
+.... .|..+ ...+|.++.++|||||.+++++-.......+ ..+..+++.. +|+.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene-----~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENE-----LQIEAFLQRHPEFSA 401 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHH-----HHHHHHHHhCCCCEE
Confidence 21110 11111 2358999999999999999998644332221 2256666654 3443
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=103.51 Aligned_cols=122 Identities=13% Similarity=0.167 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEE--EEecCCCCCC--CCCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMI--SALSTKQLPY--PSSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~--~~~d~~~Lpf--~d~sFDlV~~ 298 (617)
.++.+|||+|||+|..+..+++... ...+.++|+++.+++.++++ |..+.+ ..+|....++ ++++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 4567899999999999999887632 23788899999999888765 554433 3444444443 4678999984
Q ss_pred ----cc--ccccccc-----c----------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc
Q 039518 299 ----SR--CRVDWHA-----N----------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM 354 (617)
Q Consensus 299 ----s~--~l~h~~~-----d----------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~ 354 (617)
+. .+.+.++ + ...+|.++.++|||||.+++++-.......+. .++.++++.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~-----~v~~~l~~~ 387 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSE-----QIKAFLQEH 387 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHH-----HHHHHHHhC
Confidence 21 1111110 1 25689999999999999999986544332222 255565554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-08 Score=98.18 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=100.3
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
++|||||.|.+...|...++. .+.-.|.|..|++.++.. ++.....++|-+.|+|.+++||+|+++. ..||..+
T Consensus 76 a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW~Nd 152 (325)
T KOG2940|consen 76 AFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHWTND 152 (325)
T ss_pred eeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhhhhcc
Confidence 999999999999999998865 677789999999988865 4456677889999999999999999886 5689989
Q ss_pred hHHHHHHHHHhccCCeEEEEEeCCCCC-----------------CCCCChhh---HHHHHHHHHHcCceEEEEeee
Q 039518 309 DGILLKEVDRVLRPNGYFVYSAPPAYR-----------------KDKDYPLI---WDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG~Liis~p~~~~-----------------~~~~~~~~---W~~le~La~~~gw~~v~~~~~ 364 (617)
....+..+...|||+|.|+-+.-.... -...+-.+ -+.+-.++.++||..+....+
T Consensus 153 LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 153 LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 999999999999999999876310000 00000011 223777888999988876544
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3e-07 Score=97.31 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=82.9
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.+|||+|||+|.++..++..... ..++++|+++.+++.|+++ +. ++.+..+|+.. ++++++||+|+|+--..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 46999999999999999876432 3688899999999988876 43 36777777633 23456899999872111
Q ss_pred -------------ccc-----------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 304 -------------DWH-----------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 304 -------------h~~-----------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
+.+ +....++.++.++|+|||.+++.... . ...+.++....++..+
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~--------~--~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN--------S--RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc--------C--HHHHHHHHhhCCCEEE
Confidence 111 01246789999999999999996531 1 2346666666666444
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 283 ~ 283 (307)
T PRK11805 283 E 283 (307)
T ss_pred E
Confidence 3
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.4e-08 Score=100.33 Aligned_cols=103 Identities=25% Similarity=0.308 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----------CCCcEEEEecC------CCCCCCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----------GIGAMISALST------KQLPYPS 290 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----------g~~~~~~~~d~------~~Lpf~d 290 (617)
++..+||+|||-|.-+...-+.++. .+.++||++..++.|++| ..++.+..+|. ..+++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4455999999999888777666665 678889999999999887 12466777763 3456666
Q ss_pred CCeeEEEecccccccccc---hHHHHHHHHHhccCCeEEEEEeCC
Q 039518 291 SSFEMVHCSRCRVDWHAN---DGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~~~d---~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.+||+|-|.+|+|.--+. ...+|.++.+.|+|||+|+-+.|.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 679999999887654332 456899999999999999999874
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-07 Score=98.63 Aligned_cols=109 Identities=13% Similarity=0.206 Sum_probs=77.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEec-
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCS- 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s- 299 (617)
..++.+|||+|||+|..+..+++.......+.++|+++.+++.++++ ++ ++.+...|...++...+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35677899999999999998877522112678889999999888765 43 3566777776666555679999852
Q ss_pred ---cc--cc-------cccc--------chHHHHHHHHHhccCCeEEEEEeCCCC
Q 039518 300 ---RC--RV-------DWHA--------NDGILLKEVDRVLRPNGYFVYSAPPAY 334 (617)
Q Consensus 300 ---~~--l~-------h~~~--------d~~~~L~el~RvLrPGG~Liis~p~~~ 334 (617)
.. +. .+.+ ....+|.++.++|||||+++.++-...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 10 00 0110 123489999999999999999975433
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-07 Score=92.17 Aligned_cols=104 Identities=17% Similarity=0.339 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCc----HHHHHhccC----CCcEEEeeecCCcHHHHHHHHHh--------CC-----------------
Q 039518 228 GVFQVLDVGCGVA----SFSAFLLPL----DIQTMSFAPKDGHENQIQFALER--------GI----------------- 274 (617)
Q Consensus 228 ~g~rVLDIGCGtG----~~a~~La~~----gv~~v~v~~iDis~~~lq~A~er--------g~----------------- 274 (617)
+..+|+..||++| +++..|.+. ...-+.|.+.|+++.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 455555551 12246899999999999999753 11
Q ss_pred --------CcEEEEecCCCCCCCCCCeeEEEeccccccccc-chHHHHHHHHHhccCCeEEEEEeC
Q 039518 275 --------GAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 275 --------~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.+.+...|+.+.+.+.+.||+|+|.++++.+.+ ....++..+++.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 245566666553345678999999999999873 346799999999999999999753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-07 Score=91.38 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH-hCC----------------CcEEEEecCCCCCCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE-RGI----------------GAMISALSTKQLPYP 289 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e-rg~----------------~~~~~~~d~~~Lpf~ 289 (617)
.++.+||+.|||.|....+|+++|. +|+++|+|+.+++.+.+ ++. .+.+.++|+..++..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4566899999999999999999986 67888999999999844 332 245677888777643
Q ss_pred C-CCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeCC---CCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 290 S-SSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPP---AYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 290 d-~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~---~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
. ++||+|+=..+++-++ +....+.+.+.++|+|||.+++.+-. .....|.....-++++++.. .+|++...+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 3 4799999766666555 44678999999999999994443321 11112222223345777776 6777766443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=95.23 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=68.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
+++|.+|||||||+|.+++.|+...-..-.+..+|..+..++.|+++ +. ++.+..+|...---....||.|++..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 56788999999999999999987622222566789999999988876 44 57788887643322456899999876
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..... | ..+.+.|++||++++-..
T Consensus 150 a~~~i---p----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 150 AVPEI---P----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp BBSS---------HHHHHTEEEEEEEEEEES
T ss_pred ccchH---H----HHHHHhcCCCcEEEEEEc
Confidence 54322 2 346677999999999653
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=101.83 Aligned_cols=129 Identities=13% Similarity=0.176 Sum_probs=86.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCC-CCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLP-YPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lp-f~d~sFDlV~~s 299 (617)
..+|.+|||+|||+|..+.++++.......++++|+++.+++.++++ |+. +.+...|...++ +.+++||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 45677899999999999988887521123688889999999888765 443 567777877765 456789999962
Q ss_pred c-c--ccccccc------------------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH-cCce
Q 039518 300 R-C--RVDWHAN------------------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA-MCWK 357 (617)
Q Consensus 300 ~-~--l~h~~~d------------------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~-~gw~ 357 (617)
- | ...+..+ ..++|.++.++|||||.+++++-.......+ +.+..++++ -+|+
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne-----~vv~~fl~~~~~~~ 389 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENT-----EVVKRFVYEQKDAE 389 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCH-----HHHHHHHHhCCCcE
Confidence 1 1 1111111 2456999999999999999998654332222 225555553 3454
Q ss_pred EE
Q 039518 358 LI 359 (617)
Q Consensus 358 ~v 359 (617)
.+
T Consensus 390 ~~ 391 (431)
T PRK14903 390 VI 391 (431)
T ss_pred Ee
Confidence 43
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.8e-07 Score=91.15 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=82.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCC-CCC-CCCCeeEEEecccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQ-LPY-PSSSFEMVHCSRCRVD 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~-Lpf-~d~sFDlV~~s~~l~h 304 (617)
+.+|||+|||+|.++..+++.... ..++++|+++.+++.|+++- ....+..+|..+ ++- ..++||+|+++--...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346999999999999998865322 26788999999999988762 124667777643 221 1357999998742221
Q ss_pred c------c---------------cc----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 305 W------H---------------AN----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 305 ~------~---------------~d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
. . .+ ...++..+.++|+|||.+++..... . -..+..++++.||+..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-------~--~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-------Q--APLAVEAFARAGLIAR 236 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc-------h--HHHHHHHHHHCCCCce
Confidence 0 0 01 1357778889999999999976411 1 3457777788887655
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 237 ~ 237 (251)
T TIGR03704 237 V 237 (251)
T ss_pred e
Confidence 4
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=88.68 Aligned_cols=96 Identities=10% Similarity=-0.043 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.++.+|||+|||+|.++..+++++. .++++|+++.+++.++++. .++.+..+|+.++++++..||.|+++.- .
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y 87 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-Y 87 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-c
Confidence 4556799999999999999998843 6788899999999998773 2577888999988888778999997642 2
Q ss_pred ccccchHHHHHHHHHh--ccCCeEEEEE
Q 039518 304 DWHANDGILLKEVDRV--LRPNGYFVYS 329 (617)
Q Consensus 304 h~~~d~~~~L~el~Rv--LrPGG~Liis 329 (617)
+.. ...+..+.+. +.++|.+++.
T Consensus 88 ~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 88 NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 322 2333333332 4578888775
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.5e-07 Score=91.42 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=76.6
Q ss_pred eEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHHHhCC------CcEEEEecCCC--CCCCCCCeeEEEeccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFALERGI------GAMISALSTKQ--LPYPSSSFEMVHCSRC 301 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~erg~------~~~~~~~d~~~--Lpf~d~sFDlV~~s~~ 301 (617)
+||+||||.|.....+++-... .+.+.+.|.|+.+++..+++.. .+.+...+... -|...+++|+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 5999999999988888876432 2578889999999999887622 12222222222 2456789999999988
Q ss_pred cccccc-chHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHA-NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~-d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+...++ ....++.++.++|||||.+++-+-
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 877763 356799999999999999999763
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-07 Score=96.77 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..+++.......+.++|+++.+++.|+++ +. ++.+..+|....+...++||+|++...
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG 158 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc
Confidence 4566799999999999999987532212467889999999888764 43 366677776655545568999998643
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+ ....+.+.|+|||.+++..
T Consensus 159 ~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHH-------hHHHHHHhcCCCCEEEEEe
Confidence 322 2345678999999998865
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6e-07 Score=91.42 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=90.3
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
+.+.+|++|||.|.|+|.++.+|+.. +... .+...|+.++..+.|+++ ++ .+.+...|+.+.-+++ .||.|
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G-~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav 167 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEG-HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAV 167 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCc-eEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEE
Confidence 45678999999999999999999963 3333 666779999999999887 22 2666677776665555 89999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
+. ..+ +|-.++..+.++|+|||.+++-.|.... -++....+++.||..+.
T Consensus 168 ~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P~veQ--------v~kt~~~l~~~g~~~ie 217 (256)
T COG2519 168 FL-----DLP-DPWNVLEHVSDALKPGGVVVVYSPTVEQ--------VEKTVEALRERGFVDIE 217 (256)
T ss_pred EE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcCCHHH--------HHHHHHHHHhcCccchh
Confidence 83 334 8999999999999999999998874321 23344445555887554
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-07 Score=101.00 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=84.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlV~~ 298 (617)
..++.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+ ++.+..+|+..++ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 34567899999999999999987631123788899999999888765 43 3677777876653 33 68999996
Q ss_pred ccc------ccc-----ccc---c-------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-Cc
Q 039518 299 SRC------RVD-----WHA---N-------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CW 356 (617)
Q Consensus 299 s~~------l~h-----~~~---d-------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw 356 (617)
.-- +.+ |.. + ...+|.++.++|||||.+++++-...... . -..+..++++. .|
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E--n---e~vv~~~l~~~~~~ 401 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE--N---EEVIEAFLEEHPEF 401 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh--h---HHHHHHHHHhCCCc
Confidence 421 000 110 0 13579999999999999998875433221 1 12355555554 35
Q ss_pred eEE
Q 039518 357 KLI 359 (617)
Q Consensus 357 ~~v 359 (617)
+.+
T Consensus 402 ~~~ 404 (444)
T PRK14902 402 ELV 404 (444)
T ss_pred EEe
Confidence 543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9e-07 Score=89.91 Aligned_cols=112 Identities=16% Similarity=0.304 Sum_probs=79.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
...|-|+|||.+.++..- ...+..+++.+ ++-.+...|+.++|+++++.|++++.. --+..|
T Consensus 181 ~~vIaD~GCGEakiA~~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CL--SLMgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCL--SLMGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeH--hhhccc
Confidence 456999999999887621 11333333322 224567889999999999999999753 333468
Q ss_pred hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeee
Q 039518 309 DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~ 364 (617)
...++.|++|+|+|||.|+|..... ...+ -..+.+.+..+||.+......
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~S--Rf~d----v~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKS--RFSD----VKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhh--hccc----HHHHHHHHHHcCCeeeehhhh
Confidence 9999999999999999999986422 2222 234788889999998775443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-06 Score=83.00 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=85.2
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCC-CCCCCCCCeeE
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTK-QLPYPSSSFEM 295 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~-~Lpf~d~sFDl 295 (617)
.++++.++++++|||||+|+++..++..+.. ..++++|-++++++..+++ +. ++.+..+++. .|+-.+ +||.
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~da 105 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDA 105 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCE
Confidence 4567788899999999999999999944443 3677888888887766554 43 4566777653 333222 7999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
|+.... .+.+..|+.+...|||||.+++..-. .+. -....+..++.|+.
T Consensus 106 iFIGGg-----~~i~~ile~~~~~l~~ggrlV~nait-----lE~---~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIGGG-----GNIEEILEAAWERLKPGGRLVANAIT-----LET---LAKALEALEQLGGR 154 (187)
T ss_pred EEECCC-----CCHHHHHHHHHHHcCcCCeEEEEeec-----HHH---HHHHHHHHHHcCCc
Confidence 996642 36778999999999999999996521 111 22355556677773
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-07 Score=94.03 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=74.0
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----------CCcEEEEecCCC-CCCCCCCeeEEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----------IGAMISALSTKQ-LPYPSSSFEMVH 297 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----------~~~~~~~~d~~~-Lpf~d~sFDlV~ 297 (617)
+.+||+||||+|..+..++++. .+..++.+|+++.+++.|++.. .++.+..+|... +...+++||+|+
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999998762 2237888999999999998752 235677777543 233467899999
Q ss_pred ecccccccccc----hHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHAN----DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~d----~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.. ..++... ..++++.+.+.|+|||.+++...
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 753 2232211 25678999999999999998643
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.4e-07 Score=91.54 Aligned_cols=96 Identities=8% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCeEEEECCCCcHHHHHhccCC--CcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLD--IQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~g--v~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
+.+|||+|||+|.++..++++. .....++++|+++.+++.|+++...+.+...|+...++ +++||+|+++--.....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 4579999999999999887641 11247899999999999999887678888888876654 56899999984333111
Q ss_pred -----------cchHHHHHHHHHhccCCeE
Q 039518 307 -----------ANDGILLKEVDRVLRPNGY 325 (617)
Q Consensus 307 -----------~d~~~~L~el~RvLrPGG~ 325 (617)
.-...++..+.+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1134578888897777775
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.7e-07 Score=88.30 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=70.7
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecC-CCCCCCCCCeeEEEe
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALST-KQLPYPSSSFEMVHC 298 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~-~~Lpf~d~sFDlV~~ 298 (617)
.+.++.+|||||||+|..++.|++..- .|..+|..+...+.|+++ |. ++.+.++|. ..+| +...||.|+.
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~V 144 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIV 144 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEE
Confidence 345677899999999999999998755 455568888998999875 44 577777775 3333 3478999998
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+....+ ..+.+-|+|||.+++-.
T Consensus 145 taaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 145 TAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred eeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 76554433 34556789999999965
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.9e-07 Score=91.20 Aligned_cols=100 Identities=20% Similarity=0.178 Sum_probs=77.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.+..+|||||+|+|.++..++++.+.. .++-.|. +..++.+++ ...+.+..+|+. -++|. +|+++..+++|+|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNL-RATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTS-EEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCC-cceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 445679999999999999999886544 5566786 556677777 667889999986 55665 99999999999998
Q ss_pred cc-hHHHHHHHHHhccCC--eEEEEEeCC
Q 039518 307 AN-DGILLKEVDRVLRPN--GYFVYSAPP 332 (617)
Q Consensus 307 ~d-~~~~L~el~RvLrPG--G~Liis~p~ 332 (617)
++ -..+|+++++.|+|| |.++|.+..
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 33 466899999999999 999998763
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-06 Score=88.80 Aligned_cols=119 Identities=13% Similarity=0.225 Sum_probs=81.8
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
+|||+|||+|.++..++..... ..|+++|+|+.+++.|+++ ++ ++.+...|. ++--.++||+|+||--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl--f~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDL--FEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec--ccccCCceeEEEeCCCCCCC
Confidence 5999999999999999998765 3788999999999999876 43 222222221 22123489999998432221
Q ss_pred c----------cch--------------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC-ceEEE
Q 039518 306 H----------AND--------------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC-WKLIA 360 (617)
Q Consensus 306 ~----------~d~--------------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~g-w~~v~ 360 (617)
. -+| ..++.++.+.|+|||.+++..-. .. -+.+.++..+.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-------~q--~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-------TQ--GEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-------Cc--HHHHHHHHHhcCCceEEE
Confidence 1 011 34688899999999999997531 11 345888889999 55444
Q ss_pred E
Q 039518 361 R 361 (617)
Q Consensus 361 ~ 361 (617)
.
T Consensus 261 ~ 261 (280)
T COG2890 261 T 261 (280)
T ss_pred E
Confidence 3
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.6e-07 Score=92.24 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecCCCC-CCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------IGAMISALSTKQL-PYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~~~L-pf~d~sFDlV~~s~ 300 (617)
++.+|||||||+|.++..+++.... ..++.+|+++++++.|++.. .++.+..+|.... .-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3457999999999999999876533 37888999999999999862 2356777775332 22236799999752
Q ss_pred cccc--ccc--chHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVD--WHA--NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h--~~~--d~~~~L~el~RvLrPGG~Liis~ 330 (617)
... .+. ....+++++.++|+|||.+++..
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 111 111 13689999999999999999953
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=85.29 Aligned_cols=119 Identities=18% Similarity=0.343 Sum_probs=81.6
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CC--CCCCCeeEEEeccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LP--YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lp--f~d~sFDlV~~s~~l~ 303 (617)
+||||||.|.+...+|...... .+.++|+....+..|.++ ++ ++.+..+|+.. ++ ++++++|.|+..+ --
T Consensus 21 ~lEIG~G~G~~l~~~A~~~Pd~-n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PD 98 (195)
T PF02390_consen 21 ILEIGCGKGEFLIELAKRNPDI-NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PD 98 (195)
T ss_dssp EEEET-TTSHHHHHHHHHSTTS-EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred EEEecCCCCHHHHHHHHHCCCC-CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CC
Confidence 9999999999999999887654 777889988888766554 44 57777777765 32 4678999999654 33
Q ss_pred ccccc--------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH--cCceEEE
Q 039518 304 DWHAN--------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA--MCWKLIA 360 (617)
Q Consensus 304 h~~~d--------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~--~gw~~v~ 360 (617)
+|+.. -..+|..+.++|+|||.+.+.+ +.....+.+.+.++. .+|+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T--------D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT--------DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE--------S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe--------CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 44421 1568999999999999999987 333344556666665 4777664
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.7e-06 Score=85.83 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=94.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHH---HHHHh---CC--------------------------
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQ---FALER---GI-------------------------- 274 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq---~A~er---g~-------------------------- 274 (617)
+...+||--|||.|.++-.++.+|. .+.+.|.|--|+- +.... ..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 3456799999999999999999977 5677888888742 22221 00
Q ss_pred -------------CcEEEEecCCCCCCCC---CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCC
Q 039518 275 -------------GAMISALSTKQLPYPS---SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK 338 (617)
Q Consensus 275 -------------~~~~~~~d~~~Lpf~d---~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~ 338 (617)
+.....+|+..+..++ ++||+|++.+ ++.-..+.-.+|..+.++|||||+++=.+|..+...+
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 0112223333332233 6899999875 4444567888999999999999998888886554444
Q ss_pred C-------ChhhHHHHHHHHHHcCceEEEEee
Q 039518 339 D-------YPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 339 ~-------~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
. -...|+++..+++..||+.+..+.
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 3 344599999999999999987554
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=102.90 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=85.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCCC-CCCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQL-PYPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~L-pf~d~sFDlV~~s 299 (617)
.+.+|||+|||+|.++..++..|.. .++++|+++.+++.|+++ +. .+.+..+|+.+. .-..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 3567999999999999999987654 578889999999999875 33 367777775332 1114689999985
Q ss_pred ccccc----------cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 300 RCRVD----------WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l~h----------~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
--... ...+...++..+.++|+|||.++++..... .....+.+...|+.+...
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEE
Confidence 32111 112345678889999999999988764221 112355667778776653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-07 Score=79.10 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=60.2
Q ss_pred EeccccccchhhhccCC-CeEEEEeccCCCCchhHHHHhhcccc---cccccCCCCCCCCCccchhhccccccccccCCC
Q 039518 472 MDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAIYNRGILG---AFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGE 547 (617)
Q Consensus 472 mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~~~RGlig---~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~ 547 (617)
||+|||.|-+++.|.++ +.=|..+-+.. ..++.+-++.--. ..+.=-+.++.-+.+||+|++.++|.++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-----
Confidence 79999999999999887 54333333222 4555555554321 2211123333324999999999999853
Q ss_pred CCChhhHHhhhhhcccCCceEEE
Q 039518 548 VCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 548 ~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
-....++-|+-|+|||||+++|
T Consensus 74 -~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCcCeEEeC
Confidence 4567899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.7e-06 Score=89.03 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=85.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------------CCCcEEEEecCCC-CCCCCCCeeE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------------GIGAMISALSTKQ-LPYPSSSFEM 295 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------------g~~~~~~~~d~~~-Lpf~d~sFDl 295 (617)
..+||+||||+|..+..+++.. .+..++.+|+++++++.|++. ..++.+.++|+.+ +...++.||+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 3579999999999988888753 234788899999999999962 2356777777644 3334568999
Q ss_pred EEecccccccc-----cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 296 VHCSRCRVDWH-----ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 296 V~~s~~l~h~~-----~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
|++.. ..+.. ..-..+++.+.+.|+|||.+++...... ........+.+.+++.++.+..
T Consensus 230 IIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~----~~~~~~~~i~~tL~~af~~v~~ 294 (374)
T PRK01581 230 IIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA----DAPLVYWSIGNTIEHAGLTVKS 294 (374)
T ss_pred EEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh----hhHHHHHHHHHHHHHhCCceEE
Confidence 99762 11111 0125689999999999999988643211 1111222366677777776654
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=87.48 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=85.5
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCC---CCCe
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYP---SSSF 293 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~---d~sF 293 (617)
+.+.||++|||.|.|+|+++..|+.. +... .+...|+++...+.|+++ |+ .+.+...|+..-.|. ++.|
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 56688999999999999999999864 3333 556668999999999876 44 467888887543332 3679
Q ss_pred eEEEecccccccccchHHHHHHHHHhc-cCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 294 EMVHCSRCRVDWHANDGILLKEVDRVL-RPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~~L~el~RvL-rPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
|.|+. .++ +|-.++..+.++| ||||.++.-.|... .-.+..+.+++.||..+.
T Consensus 115 DavfL-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------Qv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 115 DAVFL-----DLP-DPWEAIPHAKRALKKPGGRICCFSPCIE--------QVQKTVEALREHGFTDIE 168 (247)
T ss_dssp EEEEE-----ESS-SGGGGHHHHHHHE-EEEEEEEEEESSHH--------HHHHHHHHHHHTTEEEEE
T ss_pred cEEEE-----eCC-CHHHHHHHHHHHHhcCCceEEEECCCHH--------HHHHHHHHHHHCCCeeeE
Confidence 99973 344 7888999999999 99999999888532 123455566678998774
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.8e-06 Score=94.29 Aligned_cols=124 Identities=14% Similarity=0.064 Sum_probs=86.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------------CCCcEEEEecCCC-CCCCCCCee
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------------GIGAMISALSTKQ-LPYPSSSFE 294 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------------g~~~~~~~~d~~~-Lpf~d~sFD 294 (617)
+.++|||||||+|..+..++++.. +..++.+|+++++++.|+++ ..++++...|..+ +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 346799999999999999987632 23788899999999999983 1346677777644 222346899
Q ss_pred EEEecccccccccc-----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 295 MVHCSRCRVDWHAN-----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 295 lV~~s~~l~h~~~d-----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
+|++.. ..+.... ..++++.+.+.|+|||.+++...+... .......+.+.+++.||.
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~----~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF----APKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc----chHHHHHHHHHHHHcCCE
Confidence 999863 2222111 245889999999999999986532221 122234577777888883
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.7e-06 Score=88.22 Aligned_cols=101 Identities=12% Similarity=0.200 Sum_probs=74.9
Q ss_pred CeEEEECCCCc----HHHHHhccCC---CcEEEeeecCCcHHHHHHHHHh--------CC--------------------
Q 039518 230 FQVLDVGCGVA----SFSAFLLPLD---IQTMSFAPKDGHENQIQFALER--------GI-------------------- 274 (617)
Q Consensus 230 ~rVLDIGCGtG----~~a~~La~~g---v~~v~v~~iDis~~~lq~A~er--------g~-------------------- 274 (617)
.||+..||+|| +++..|.+.. ..-+.|.+.|++..+++.|++- ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 4555555531 1135799999999999999863 11
Q ss_pred --------CcEEEEecCCCCCCC-CCCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 275 --------GAMISALSTKQLPYP-SSSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 275 --------~~~~~~~d~~~Lpf~-d~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+.+...|+.+.+++ .+.||+|+|.++++++. +....++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 123444555444443 57899999999999886 346779999999999999998864
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.1e-06 Score=91.12 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC----CCCCCCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ----LPYPSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~----Lpf~d~sFDlV~ 297 (617)
.++.+|||+|||+|.++..|++.+. .+.++|+++.+++.|+++ +. ++.+..+|+.+ +++.+++||+|+
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4567899999999999999998753 678889999999998875 33 47788888643 345567899999
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+.--. . .....+..+.+ ++|++.++++..+... -..+..+ ...||++...
T Consensus 373 ~dPPr---~-g~~~~~~~l~~-~~~~~ivyvSCnp~tl--------aRDl~~L-~~~gY~l~~i 422 (443)
T PRK13168 373 LDPPR---A-GAAEVMQALAK-LGPKRIVYVSCNPATL--------ARDAGVL-VEAGYRLKRA 422 (443)
T ss_pred ECcCC---c-ChHHHHHHHHh-cCCCeEEEEEeChHHh--------hccHHHH-hhCCcEEEEE
Confidence 75322 2 23345555555 6999999999753321 1124444 3567887754
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.3e-06 Score=86.08 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=70.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC-C-----CCCCCeeEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL-P-----YPSSSFEMV 296 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L-p-----f~d~sFDlV 296 (617)
.++|||+|||+|..+..++..-.....++.+|+++.+++.|+++ |+ .+.+..+++.+. + .++++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 44699999999998887776422223678889999999988875 43 366777776432 2 124689999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.-. .......++..+.++|||||.+++..
T Consensus 149 fiDa----~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 149 FVDA----DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 8542 22345678999999999999988754
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.5e-06 Score=88.48 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCC--CCCCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQL--PYPSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~L--pf~d~sFDlV 296 (617)
..++||+||||.|..+..+++. ..+..++.+|+++.+++.|++.. .++.+..+|.... ..+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3567999999999999999876 23346777899999999998852 2467777775322 1235689999
Q ss_pred Eecccccccccc----hHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHAN----DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d----~~~~L~el~RvLrPGG~Liis~ 330 (617)
++-. ..++... ...+++.+.+.|+|||.++...
T Consensus 170 i~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9743 2222211 2468999999999999998754
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.8e-06 Score=88.76 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCCCC----CCCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQLP----YPSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~Lp----f~d~sFDlV 296 (617)
++.+|||+|||+|.++..++..+. ..++++|+++.+++.|+++ ++ ++.+..+|+.+.- ...++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 356799999999999987766553 2678889999999988875 44 3567777764431 134689999
Q ss_pred Eecccccccc--------cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWH--------ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~--------~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++.--...-. .+...++..+.++|+|||.++...-
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9873221111 1233456678899999999998653
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.6e-06 Score=86.02 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=70.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~~ 298 (617)
+.+||+||||+|.++..+++... ...++.+|+++.+++.|++.. ..+.+...|... +...+++||+|++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34799999999999988887642 336888899999999988752 234555555422 1222568999997
Q ss_pred ccccccccc--c--hHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHA--N--DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~--d--~~~~L~el~RvLrPGG~Liis~ 330 (617)
... .+... + ..++++.+.+.|+|||.+++..
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 542 22221 1 3578899999999999999864
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=97.37 Aligned_cols=122 Identities=10% Similarity=0.027 Sum_probs=84.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----C-----------------CcEEEEecCCCCC
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----I-----------------GAMISALSTKQLP 287 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~-----------------~~~~~~~d~~~Lp 287 (617)
+.+|||+|||+|.++..+++..... .++++|+++.+++.|+++. . ++.+..+|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~-~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPS-KVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4579999999999999998875432 7889999999999987652 1 3567777764322
Q ss_pred CC-CCCeeEEEeccccccc-------------------------c--------cc----hHHHHHHHHHhccCCeEEEEE
Q 039518 288 YP-SSSFEMVHCSRCRVDW-------------------------H--------AN----DGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 288 f~-d~sFDlV~~s~~l~h~-------------------------~--------~d----~~~~L~el~RvLrPGG~Liis 329 (617)
-. ...||+|+|+--.+.- . +| ...++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 2369999997321110 0 01 145788889999999999996
Q ss_pred eCCCCCCCCCChhhHHHHH-HHHHHcCceEEE
Q 039518 330 APPAYRKDKDYPLIWDKLV-NLTTAMCWKLIA 360 (617)
Q Consensus 330 ~p~~~~~~~~~~~~W~~le-~La~~~gw~~v~ 360 (617)
.-. .. -+.+. +++++.||+.+.
T Consensus 278 iG~------~q---~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 278 MGG------RP---GQAVCERLFERRGFRITK 300 (1082)
T ss_pred ECc------cH---HHHHHHHHHHHCCCCeeE
Confidence 521 11 23476 588889988754
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=81.52 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=66.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---CcEEEE-------------------------
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI---GAMISA------------------------- 280 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~---~~~~~~------------------------- 280 (617)
+..+|||||..|.++..+++..- .-.+-++||++..++.|++... .....+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 44599999999999999988622 2257788999999999987611 000000
Q ss_pred ----------------ecCC-CCCCCCCCeeEEEecccc----ccccc-chHHHHHHHHHhccCCeEEEEE
Q 039518 281 ----------------LSTK-QLPYPSSSFEMVHCSRCR----VDWHA-NDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 281 ----------------~d~~-~Lpf~d~sFDlV~~s~~l----~h~~~-d~~~~L~el~RvLrPGG~Liis 329 (617)
.+.. -|.+....||+|+|-... +.|.+ -...+++.+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 011234579999985322 22332 2467999999999999999993
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=83.50 Aligned_cols=103 Identities=13% Similarity=0.222 Sum_probs=75.5
Q ss_pred CCeEEEECCCCc----HHHHHhccCCC----cEEEeeecCCcHHHHHHHHHh---------CCC----------------
Q 039518 229 VFQVLDVGCGVA----SFSAFLLPLDI----QTMSFAPKDGHENQIQFALER---------GIG---------------- 275 (617)
Q Consensus 229 g~rVLDIGCGtG----~~a~~La~~gv----~~v~v~~iDis~~~lq~A~er---------g~~---------------- 275 (617)
.-+|.-.||+|| +++..|.+... ..+.|.+.|++...++.|+.- +++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 457999999999 66666666543 256999999999999999742 111
Q ss_pred ---------cEEEEecCCCCCCCCCCeeEEEecccccccccc-hHHHHHHHHHhccCCeEEEEEeC
Q 039518 276 ---------AMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN-DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 276 ---------~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.+...|+..-++..+.||+|+|-++++.+... ..+++..++..|+|||+|++...
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 222333332223245669999999999988733 46799999999999999999643
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.8e-06 Score=84.55 Aligned_cols=97 Identities=20% Similarity=0.313 Sum_probs=75.8
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH----HhCC-CcEEEEecCCCC-C--CCCCCeeEEEeccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL----ERGI-GAMISALSTKQL-P--YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~----erg~-~~~~~~~d~~~L-p--f~d~sFDlV~~s~~l~ 303 (617)
+||||||.|.+...+|++++.. .+.|+|+....+..|. +.++ ++.+...|+..+ + +++++.|-|+.++ --
T Consensus 52 ~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-PD 129 (227)
T COG0220 52 VLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-PD 129 (227)
T ss_pred EEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-CC
Confidence 9999999999999999998765 6777787777665554 4588 888888886443 2 3566999999765 34
Q ss_pred ccccch--------HHHHHHHHHhccCCeEEEEEe
Q 039518 304 DWHAND--------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 304 h~~~d~--------~~~L~el~RvLrPGG~Liis~ 330 (617)
+|+... ..+++.+.++|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 565322 468999999999999999987
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=84.72 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCC-CCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPY-PSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf-~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..+++.+. .+.++|+++.+++.|+++ ++ ++.+..+|+.++.. ..+.||+|++.--.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 45799999999999999998764 678889999999988765 44 47788888766532 34579999976321
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
. .....+.++..-++|++.++++..+
T Consensus 251 ---~-G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 251 ---R-GIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred ---C-CccHHHHHHHHHcCCCeEEEEECCc
Confidence 1 1122333444457899999988754
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.8e-05 Score=86.04 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC----CCCCCCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ----LPYPSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~----Lpf~d~sFDlV~ 297 (617)
.++.+|||+|||+|.++..|++... .+.++|+++.+++.|+++ ++ ++.+..+|+.+ +++.+++||+|+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4556799999999999999987643 577889999999988875 33 46778887644 234456799999
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..-.... -...++..+.+ |+|++.++++.
T Consensus 368 ~dPPr~G---~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 368 LDPPRKG---CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred ECcCCCC---CCHHHHHHHHh-cCCCEEEEEcC
Confidence 6532111 12455665554 89999888875
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=67.80 Aligned_cols=96 Identities=28% Similarity=0.370 Sum_probs=69.4
Q ss_pred EEEECCCCcHHH--HHhccCCCcEEEeeecCCcHHHHHHHHHhCC--C---cEEEEecCCC--CCCCC-CCeeEEEeccc
Q 039518 232 VLDVGCGVASFS--AFLLPLDIQTMSFAPKDGHENQIQFALERGI--G---AMISALSTKQ--LPYPS-SSFEMVHCSRC 301 (617)
Q Consensus 232 VLDIGCGtG~~a--~~La~~gv~~v~v~~iDis~~~lq~A~erg~--~---~~~~~~d~~~--Lpf~d-~sFDlV~~s~~ 301 (617)
+||+|||+|... ..+...+ ..+.++|++..++..+..... . +.+...+... +++.+ ..||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999854 3333222 244558999988887554431 1 3566666654 78777 489999 6666
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
..++.. ....+.++.++|+|+|.+++....
T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 666654 788999999999999999998753
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5e-06 Score=82.06 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=100.2
Q ss_pred cceecCCCCCcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH
Q 039518 191 QLWWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL 270 (617)
Q Consensus 191 d~~~Fpgggt~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~ 270 (617)
+.--|-|.|.+|--..+++.. ++...... -.+...++||+|+|.|.++..++... -.+.+.+.|..|....+
T Consensus 80 dING~lgrGsMFifSe~QF~k----lL~i~~p~-w~~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 80 DINGFLGRGSMFIFSEEQFRK----LLVIGGPA-WGQEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLK 151 (288)
T ss_pred ccccccccCceEEecHHHHHH----HHhcCCCc-cCCCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHh
Confidence 333466788888666665543 33222111 11234579999999999999987653 25677899999988888
Q ss_pred HhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccC-CeEEEEEe--CC---------CCCCCC
Q 039518 271 ERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRP-NGYFVYSA--PP---------AYRKDK 338 (617)
Q Consensus 271 erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrP-GG~Liis~--p~---------~~~~~~ 338 (617)
+++.++.-.. +..-.+-.||+|.|.+.+... .++..+|++++.+|+| +|..+++. |- ..+..|
T Consensus 152 kk~ynVl~~~----ew~~t~~k~dli~clNlLDRc-~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rP 226 (288)
T KOG3987|consen 152 KKNYNVLTEI----EWLQTDVKLDLILCLNLLDRC-FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRP 226 (288)
T ss_pred hcCCceeeeh----hhhhcCceeehHHHHHHHHhh-cChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCc
Confidence 7776543221 111123469999998765544 3799999999999999 88887762 21 111112
Q ss_pred C-----ChhhHHH----HHHHHHHcCceEEE
Q 039518 339 D-----YPLIWDK----LVNLTTAMCWKLIA 360 (617)
Q Consensus 339 ~-----~~~~W~~----le~La~~~gw~~v~ 360 (617)
+ .++.|++ +.+++++.||.+.+
T Consensus 227 dn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 227 DNLLENNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred hHHHHhcCccHHHHHHHHHHHHHhcCchhhh
Confidence 1 1233443 66678888887665
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.5e-05 Score=80.05 Aligned_cols=98 Identities=16% Similarity=0.303 Sum_probs=65.6
Q ss_pred ChhHHHHHHHhhhhhcc-CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---C--CC--c
Q 039518 205 GAPEYIQRLGNMMTNET-GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---G--IG--A 276 (617)
Q Consensus 205 ~a~~Y~~~L~~~L~~~~-~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g--~~--~ 276 (617)
++..|+..+.+++.... +.+....+.+|||||||+|.+...|+.+.. ...++++|+++.+++.|+++ . +. +
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 46789988888875422 233334567899999999988888876533 23788999999999999865 2 22 3
Q ss_pred EEEE-ecCCCC----CCCCCCeeEEEeccccc
Q 039518 277 MISA-LSTKQL----PYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 277 ~~~~-~d~~~L----pf~d~sFDlV~~s~~l~ 303 (617)
.+.. .+...+ ..+.+.||+|+|+--++
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 3322 122221 12466899999985443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=76.05 Aligned_cols=149 Identities=15% Similarity=0.219 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhhhccC--CCeEEEEeccCCCC-chh----HHHHhhcc--ccccc
Q 039518 448 SFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMK-NTL----SAIYNRGI--LGAFH 517 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~-~~l----~~~~~RGl--ig~~~ 517 (617)
+.|++++-.=..+.+ +..+ ..|+|+|||.|.++.++.. ...=| +-.|.. ..+ +.+-+.|+ +-+++
T Consensus 27 ~~~~~~~~d~l~l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~~~V---~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPGG--ERVLDVGSGAGFPGIPLAIARPELKV---TLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCCCeE---EEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 378877733222222 4443 5799999999988776642 22223 333333 222 22334454 33344
Q ss_pred ccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEe--e
Q 039518 518 DWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELH--S 595 (617)
Q Consensus 518 ~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~--~ 595 (617)
.-.+.+.. ..+||+|-+..+ ..+++++-++-|+|||||.+++-+.......+.++++.+-|.+..+ -
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~~----------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRAV----------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred ccHhhCCC-CCCccEEEEccc----------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEE
Confidence 43444443 568999986431 2457889999999999999999988888999999999999986443 2
Q ss_pred ccccCCCceeEEEEEec
Q 039518 596 LENREKKMESVLICRKK 612 (617)
Q Consensus 596 ~e~~~~~~~~~l~~~k~ 612 (617)
+-+|-+++..+.|.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 171 TLPGLDGERHLVIIRKK 187 (187)
T ss_pred ecCCCCCcEEEEEEecC
Confidence 22344444566777764
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.1e-05 Score=78.77 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcE-EEEecCCCCC-----CCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAM-ISALSTKQLP-----YPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~-~~~~d~~~Lp-----f~d~sFDlV~~s~~ 301 (617)
.+.+|||+|||+|.|+..+++++.. .++++|++..|+....+....+. +...++..+. ..-..||+++++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 4567999999999999999998753 68889999988876544444332 3333443322 11236777776532
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..|..+.++|+| |.+++-.
T Consensus 153 ---------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 ---------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------hHHHHHHHHhCc-CeEEEEc
Confidence 248889999999 7766543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.2e-06 Score=80.16 Aligned_cols=110 Identities=17% Similarity=0.337 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCC
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTY 526 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~ty 526 (617)
+.|.+.+..+... ...-.+|||+|||.|.|+..|.+.+. +++-.|.. ..+.. +-.....++-.++.. -
T Consensus 7 ~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~-~ 75 (161)
T PF13489_consen 7 RAYADLLERLLPR----LKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPPF-P 75 (161)
T ss_dssp HCHHHHHHHHHTC----TTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTHHC-H
T ss_pred HHHHHHHHHHhcc----cCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhhc-c
Confidence 3445555444431 23346999999999999999988766 34444444 22222 222222221111111 2
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
+++||+|.+..+|.+. . +...+|-+|=|+|+|||++++.+..
T Consensus 76 ~~~fD~i~~~~~l~~~---~---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHL---P---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSSEEEEEEESSGGGS---S---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ccchhhHhhHHHHhhc---c---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4899999999999975 3 4789999999999999999998654
|
... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=77.27 Aligned_cols=98 Identities=10% Similarity=0.043 Sum_probs=67.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CCCCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..++.++. ..++++|.++.+++.++++ +. ++.+...|+.. ++...++||+|++.--
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP- 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP- 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-
Confidence 45799999999999987666654 2788889999999888765 33 46677777543 3223457999998742
Q ss_pred cccccc-hHHHHHHHHH--hccCCeEEEEEeC
Q 039518 303 VDWHAN-DGILLKEVDR--VLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~~d-~~~~L~el~R--vLrPGG~Liis~p 331 (617)
+... ...++..+.. +|+|+|.+++..+
T Consensus 131 --y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 --FRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred --CCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 2222 3344555544 3799999999865
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=80.69 Aligned_cols=134 Identities=13% Similarity=0.156 Sum_probs=90.1
Q ss_pred CcccCCCCeEEEECCCCcHHHHHhccCCC-cEEEeeecCCcHHHHHHHHHh-------CCCcEEEEecCCCC--CCCCCC
Q 039518 223 NLRSAGVFQVLDVGCGVASFSAFLLPLDI-QTMSFAPKDGHENQIQFALER-------GIGAMISALSTKQL--PYPSSS 292 (617)
Q Consensus 223 ~lr~~~g~rVLDIGCGtG~~a~~La~~gv-~~v~v~~iDis~~~lq~A~er-------g~~~~~~~~d~~~L--pf~d~s 292 (617)
.++...|.+|||...|-|.++...+++|. .++++ +.+++.++.|.-+ ...+.+..+|+.++ .|+|.+
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv---Ekdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITV---EKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEE---eeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 45556788999999999999999999987 44444 5566777777644 12356777776444 377999
Q ss_pred eeEEEecccccccc--cchHHHHHHHHHhccCCeEEEEEe--CCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 293 FEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFVYSA--PPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 293 FDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Liis~--p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
||+|+----.+... -.-.++.+|++|+|||||.++--+ |...+...+- ...+.+.+++.||.++...
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~---~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDL---PKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCCh---hHHHHHHHHhcCceeeeee
Confidence 99997321111111 113568999999999999988654 2222222222 3457778899999977643
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.8e-05 Score=81.81 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=86.5
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEE-ecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISA-LSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~-~d~~~Lpf~d~sFDlV~~s 299 (617)
..+|..|||-=||||++.....-.|. .+.+.|++..|++-|+.+ ++. ..+.. .|+..+|+++++||.|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence 45677899999999999887765565 566789999999998876 332 32344 4999999999999999973
Q ss_pred ccc-----cccc---cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 300 RCR-----VDWH---ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l-----~h~~---~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
--. ..-. +-...+|..+.++|++||++++..|- .. + ..+...+|+++..
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-------~~--~----~~~~~~~f~v~~~ 328 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-------DP--R----HELEELGFKVLGR 328 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC-------cc--h----hhHhhcCceEEEE
Confidence 100 0100 11356899999999999999998871 11 2 2256678988864
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.4e-05 Score=75.18 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=85.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC-----CCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP-----YPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp-----f~d~sFDlV~~s~~l 302 (617)
.|.-|||+|.|||.++..++++++.-.+++.++.+.+.+....++...+.+..+|+..+. +.+..||.|+|..-+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 344599999999999999999998888899999999999988888777778888876664 456789999998666
Q ss_pred cccccc-hHHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWHAN-DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~~d-~~~~L~el~RvLrPGG~Liis~ 330 (617)
..++.. .-+.|+++...|++||.++...
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 666522 3568999999999999998765
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2e-05 Score=79.45 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEE-ecC-CCCC-CCCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISA-LST-KQLP-YPSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~-~d~-~~Lp-f~d~sFDlV~~ 298 (617)
+.++|||||.+.|..+..|+..-..-..++.+|.++++.+.|+++ |+. +.+.. +|. +.+. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 445699999999999999987633122688889999999999886 443 34444 343 2222 45689999983
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
-+...+...++..+.++|||||.+++..
T Consensus 139 ----DadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 139 ----DADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred ----eCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 3445566789999999999999999864
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.7e-05 Score=82.84 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=70.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CC-C----CCCCeeEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LP-Y----PSSSFEMV 296 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lp-f----~d~sFDlV 296 (617)
.++|||||+|+|..+..++..-.....++.+|.++...+.|++. |. .+.+..+++.+ |+ + .+++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 45699999999999999986411112467779999998888765 54 36777776522 22 1 13689999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.- ....+...++..+.++|+|||.+++..
T Consensus 199 FID----a~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 199 FVD----ADKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEC----CCHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 843 233456778999999999999998853
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.90 E-value=4e-05 Score=74.51 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=62.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----C----CCcEEEEecCCC-C--C-CCCCCe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----G----IGAMISALSTKQ-L--P-YPSSSF 293 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g----~~~~~~~~d~~~-L--p-f~d~sF 293 (617)
..+.+|||+|||+|..+..++.. +.. .+...|.++ .++..+.+ + ..+.+...+=.+ . . ...++|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~--~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAA--RVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-S--EEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhccCCc--eEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45678999999999999998887 332 455567776 55554433 2 223444433111 1 1 234689
Q ss_pred eEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 294 EMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
|+|+++.++.. .+....++.-+.++|+|+|.++++.+.
T Consensus 121 D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99999997765 456788999999999999998887753
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.2e-05 Score=81.75 Aligned_cols=71 Identities=13% Similarity=0.012 Sum_probs=57.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..+++++-.+|.|+++.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 4556799999999999999999864 6788899999999998764 467888899888876543358888763
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=72.80 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=80.7
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCC---CCCeeEEEecccccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYP---SSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~---d~sFDlV~~s~~l~h~~ 306 (617)
.++|||||=+...... . ....+++.+|+++.- ..+...|+...|.| ++.||+|+||.++...+
T Consensus 53 lrlLEVGals~~N~~s--~--~~~fdvt~IDLns~~----------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP 118 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--T--SGWFDVTRIDLNSQH----------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVP 118 (219)
T ss_pred ceEEeecccCCCCccc--c--cCceeeEEeecCCCC----------CCceeeccccCCCCCCcccceeEEEEEEEEeeCC
Confidence 6899999875543221 1 123468888987622 33556677666653 67899999998665444
Q ss_pred --cchHHHHHHHHHhccCCeE-----EEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeee
Q 039518 307 --ANDGILLKEVDRVLRPNGY-----FVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 307 --~d~~~~L~el~RvLrPGG~-----Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~ 364 (617)
....+++..+.+.|+|+|. |+|+.|..--.+..+- .-+.+..+.+.+||..+..+..
T Consensus 119 ~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~-~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 119 DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM-TEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc-CHHHHHHHHHhCCcEEEEEEec
Confidence 2346799999999999999 9998873321111111 1245888999999999986543
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.3e-05 Score=78.91 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=56.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..++++ .||.|+++..
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCC
Confidence 3456799999999999999998854 6788899999999998763 3477888898887765 4899998753
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.83 E-value=4e-05 Score=76.73 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=70.6
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CC-----CCCCCeeEEE
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LP-----YPSSSFEMVH 297 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lp-----f~d~sFDlV~ 297 (617)
.+|||||+++|.-+..|++.-.....++.+|+++...+.|++. |. .+.+..+++.+ ++ .+.++||+|+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VF 126 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVF 126 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEE
Confidence 3599999999999999997522223677779999999988764 43 46777776532 22 1246899998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.- +...+...++..+.++|+|||.+++..
T Consensus 127 iD----a~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 127 ID----ADKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EE----STGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred Ec----ccccchhhHHHHHhhhccCCeEEEEcc
Confidence 43 334456778999999999999999964
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.2e-05 Score=82.12 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHHHhCCC--cEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFALERGIG--AMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~erg~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.++.|||||||+|.++..-++.|.. ++.+...++..-..+.++.++.. +.+..+.++++.+|....|+|++-....-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence 4567999999999999999988743 23343334444444455556654 45556667777667788999997432111
Q ss_pred cc-c-chHHHHHHHHHhccCCeEEEEE
Q 039518 305 WH-A-NDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 305 ~~-~-d~~~~L~el~RvLrPGG~Liis 329 (617)
.. + -....|..=.+.|+|||.++=+
T Consensus 140 Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 140 LLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHhhhhhhhhhhhhhccCCCceEccc
Confidence 11 1 2355677778999999987643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=83.13 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCC--CCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQL--PYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~L--pf~d~sFDlV~~s~ 300 (617)
.+..+||||||.|.+...+|...+.. .+.++|++...+..|.++ ++ ++.+...++..+ -++++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~-~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDA-LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 34559999999999999999987654 667778888776655443 44 344554454322 26789999999764
Q ss_pred cccccccch--------HHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHAND--------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~--------~~~L~el~RvLrPGG~Liis~ 330 (617)
--+|+... ..++..+.++|+|||.+.+.+
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 34555221 568999999999999999976
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.1e-05 Score=84.16 Aligned_cols=111 Identities=13% Similarity=0.275 Sum_probs=71.2
Q ss_pred HHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHH----HHhhcccccccccCCCCCCCC
Q 039518 453 QVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSA----IYNRGILGAFHDWCEPFSTYP 527 (617)
Q Consensus 453 ~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~----~~~RGlig~~~~~~~~f~typ 527 (617)
.++.+.+.++|++|. +|||+|||.||++-++.++ .+-|..|-- +++|+.. |-++||-....--+.-|...|
T Consensus 50 k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred HHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 345566667788884 9999999999999999877 654443332 2355554 457787554443334444445
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
-+||-|=+-+.|.+. .+=....++-+++|+|+|||.+++.
T Consensus 126 ~~fD~IvSi~~~Ehv----g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHV----GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -S-SEEEEESEGGGT----CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCEEEEEechhhc----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 599998888888864 3345668899999999999999985
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=74.20 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=78.8
Q ss_pred hhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEE
Q 039518 206 APEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMIS 279 (617)
Q Consensus 206 a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~ 279 (617)
.+++.+.+.+.+..... ..+..+||+|||+|.++..++..-. -..++++|.|++++..|.++ ++. +.+.
T Consensus 130 TEE~V~~Vid~~~~~~~----~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEH----SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHHhhhhh----cccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 34666666666643221 1223599999999999999887533 33788899999999998876 222 2222
Q ss_pred Ee----c-CCCCCCCCCCeeEEEeccccccccc-------------------------chHHHHHHHHHhccCCeEEEEE
Q 039518 280 AL----S-TKQLPYPSSSFEMVHCSRCRVDWHA-------------------------NDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 280 ~~----d-~~~Lpf~d~sFDlV~~s~~l~h~~~-------------------------d~~~~L~el~RvLrPGG~Liis 329 (617)
.. + ....+...+.+|+++|+--.+.-.+ ....++.-+.|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 22 1 2334456789999999832221110 0123467788999999999997
Q ss_pred eC
Q 039518 330 AP 331 (617)
Q Consensus 330 ~p 331 (617)
..
T Consensus 285 ~~ 286 (328)
T KOG2904|consen 285 LV 286 (328)
T ss_pred ec
Confidence 64
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.8e-05 Score=75.58 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=71.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC---------------CCcEEEEecCCCCCCC
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG---------------IGAMISALSTKQLPYP 289 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg---------------~~~~~~~~d~~~Lpf~ 289 (617)
++||.+.||+|.|+|.++..++.. +.......++|..++.++.++++- ....+.++|....--+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 356778999999999988877643 333333468898999998887651 1245677787666666
Q ss_pred CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 290 SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...||.||+.. ...+..+++...|+|||.+++-.
T Consensus 160 ~a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGA-------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEcc-------CccccHHHHHHhhccCCeEEEee
Confidence 78899999873 23345677778899999999843
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=80.32 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=68.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC-CCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP-YPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp-f~d~sFDlV~~s~~l 302 (617)
+.+|||+|||+|.++..++..+. .+.++|+++.+++.|+++ +. ++.+..+|+.++. ...++||+|+..--.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 35699999999999999997753 678889999999988865 33 4677777775432 122469999976422
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..-...++..+. .++|++.++++..
T Consensus 311 ---~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 ---RGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---CCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 111234555554 4799999999874
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.5e-05 Score=83.06 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=73.0
Q ss_pred hHHHHHHHhhhhhccCCc-ccCCCCeEEEECCCCcHHHHHhccCC---CcEEEeeecCCcHHHHHHH----HHhC--CCc
Q 039518 207 PEYIQRLGNMMTNETGNL-RSAGVFQVLDVGCGVASFSAFLLPLD---IQTMSFAPKDGHENQIQFA----LERG--IGA 276 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~l-r~~~g~rVLDIGCGtG~~a~~La~~g---v~~v~v~~iDis~~~lq~A----~erg--~~~ 276 (617)
..|.+.|...+......- ....+..|||||||+|.+....++.+ .....|.+++-++.++... .+++ ..+
T Consensus 164 ~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V 243 (448)
T PF05185_consen 164 DQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV 243 (448)
T ss_dssp HHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE
T ss_pred HHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE
Confidence 355566666665432221 01134569999999999876665543 1244677777776655443 2333 458
Q ss_pred EEEEecCCCCCCCCCCeeEEEecccccccc--cchHHHHHHHHHhccCCeEEE
Q 039518 277 MISALSTKQLPYPSSSFEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 277 ~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Li 327 (617)
++..+|++++..+. ..|+|+|= .+-.+. +-..+.|....|.|||||.++
T Consensus 244 ~vi~~d~r~v~lpe-kvDIIVSE-lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 244 TVIHGDMREVELPE-KVDIIVSE-LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEES-TTTSCHSS--EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeCcccCCCCCC-ceeEEEEe-ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 89999999987665 79999963 233333 223457899999999999776
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00031 Score=74.77 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=72.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-CCcEEEEecC-CCCCCCCCCeeEEEecccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG-IGAMISALST-KQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg-~~~~~~~~d~-~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
....+|+|.|.|..+..++.... .+.+++.....+-.+++.. ..+....+|. ++.| .+ |+|++-++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P--~~--daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP--KG--DAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhcCCcceecccccccCC--Cc--CeEEEEeecccCC
Confidence 35699999999999999988543 3455566666665555543 4455555664 4444 44 6999999999999
Q ss_pred -cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 307 -ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 307 -~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++-.++|++++..|+|||.+++.+.
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4567899999999999999999875
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.4e-05 Score=79.00 Aligned_cols=111 Identities=13% Similarity=0.184 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhhc-------c--ccc
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNRG-------I--LGA 515 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~RG-------l--ig~ 515 (617)
..|++.+..+. ++..+ .+|||+|||.|.++..|.++ +-. +|+-.|-. +.|..+-+|. . |-.
T Consensus 59 ~~~r~~~~~~~---~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~ 131 (261)
T PLN02233 59 RIWKRMAVSWS---GAKMG--DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEW 131 (261)
T ss_pred HHHHHHHHHHh---CCCCC--CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEE
Confidence 44665443322 24443 57999999999998877543 111 22333434 5566665442 1 112
Q ss_pred ccccCCCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 516 FHDWCEPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 516 ~~~~~~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+.=.+.+| || .+||+|.+...+.++ . +...+|-||-|+|||||.+++.|
T Consensus 132 ~~~d~~~lp-~~~~sfD~V~~~~~l~~~---~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 132 IEGDATDLP-FDDCYFDAITMGYGLRNV---V---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEcccccCC-CCCCCEeEEEEecccccC---C---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 222234444 44 799999987777654 2 46789999999999999998875
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=5e-05 Score=82.20 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=80.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++..++|+|||.|....+++.... ..+.+++.++.++..+... ++ ...+...++...||+++.||.+.+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 4556799999999999988876532 2566778887777666543 22 23446678888899999999999998
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++.|.. ++..+++|++|+++|||+++...
T Consensus 187 ~~~~~~-~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 187 VVCHAP-DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ecccCC-cHHHHHHHHhcccCCCceEEeHH
Confidence 888876 89999999999999999999853
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.5e-05 Score=74.04 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcE--------EEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQT--------MSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSS 292 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~--------v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~s 292 (617)
+++..|||--||+|++....+..+... ..+.+.|+++.+++.|+++ +. .+.+...|+.++++.+++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 345679999999999987665442221 1367889999999988876 33 367788899999988889
Q ss_pred eeEEEeccccccccc---c----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 293 FEMVHCSRCRVDWHA---N----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 293 FDlV~~s~~l~h~~~---d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
+|.|+++--.-.-.. + ...+++++.|+|++...++++. ...+++.+...+|+...
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~-------------~~~~~~~~~~~~~~~~~ 168 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS-------------NRELEKALGLKGWRKRK 168 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES-------------CCCHHHHHTSTTSEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------------CHHHHHHhcchhhceEE
Confidence 999998732111111 1 1346899999999944444432 11266667777777665
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.9e-05 Score=77.56 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=62.4
Q ss_pred CCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc-ccc-ccccCCCCCCCCCccchhhcccccccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI-LGA-FHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl-ig~-~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
....+|||+|||.|.++..|..... .|.=.|-. ..+..+-+++- +.. ..|. +.++..+.+||+|-++..+. |
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~-~ 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQ-W 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhh-h
Confidence 3456899999999999888865542 22222333 55555555542 111 1232 33443347999998765553 2
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. -+...+|-||-|+|+|||.+++.
T Consensus 116 ---~--~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 116 ---C--GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred ---c--CCHHHHHHHHHHHcCCCeEEEEE
Confidence 1 14678999999999999999997
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.2e-05 Score=81.14 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=77.3
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc--
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH-- 306 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~-- 306 (617)
+..+||+|||.|..+. . .+ ...+.+.|++...+..|+..+.. .....|+..+|+.+.+||.+++..++||+.
T Consensus 46 gsv~~d~gCGngky~~---~-~p-~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG---V-NP-LCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCc---C-CC-cceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 4459999999996431 1 12 22566789999988888876653 566788999999999999999998888887
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCCC
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPPA 333 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~~ 333 (617)
.....+++|+.|+|||||...+.....
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 335679999999999999988876433
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.6e-05 Score=81.89 Aligned_cols=94 Identities=20% Similarity=0.261 Sum_probs=61.1
Q ss_pred CeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHH----Hhhcccc----cccccCC-CCCCCCCccchhh
Q 039518 467 EIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAI----YNRGILG----AFHDWCE-PFSTYPRTYDLLH 534 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~----~~RGlig----~~~~~~~-~f~typrtyDl~H 534 (617)
.-.+|||+|||.|+++..|.++ .|..+.+.| +++..+ -++|+.. ...|..+ +|+ +.+||+|.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~--~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADALNQPFE--DGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--CCCccEEE
Confidence 3467999999999999888653 344443322 333332 3345422 1123222 232 38999999
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+...+.++ . +...+|-||-|+|||||.++|.+
T Consensus 192 s~~~~~h~---~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHM---P---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhcc---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87776654 2 24578999999999999999853
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0002 Score=73.60 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=54.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCee---EEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFE---MVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFD---lV~~s 299 (617)
.++.+|||||||+|.++..|++++. .+.++|+++.+++.++++. .++.+..+|+..++++ .|| +|+++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 3456799999999999999999875 4677899999999888763 3577888888888765 466 77765
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=73.52 Aligned_cols=111 Identities=17% Similarity=0.292 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHHHh----hcc--cccccc
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAIYN----RGI--LGAFHD 518 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~~~----RGl--ig~~~~ 518 (617)
..|++.+-. .+.+..+ .+|||+|||.|.++..|.+. ..-|+.+-... +.+..+-+ .++ +-+++.
T Consensus 31 ~~~~~~~l~---~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~v~~~~~ 103 (231)
T TIGR02752 31 KKWRKDTMK---RMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGLHNVELVHG 103 (231)
T ss_pred HHHHHHHHH---hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEEe
Confidence 445544333 2335555 57999999999999888643 12333332221 33333222 233 122221
Q ss_pred cCCCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 519 WCEPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 519 ~~~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
=.+.++ +| .+||+|++...+... . +...+|-|+-|+|+|||.+++.+
T Consensus 104 d~~~~~-~~~~~fD~V~~~~~l~~~---~---~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 104 NAMELP-FDDNSFDYVTIGFGLRNV---P---DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred chhcCC-CCCCCccEEEEecccccC---C---CHHHHHHHHHHHcCcCeEEEEEE
Confidence 112222 34 799999987666533 1 24578899999999999999865
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.2e-05 Score=79.44 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=71.4
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHH----HHhhccc--ccccccCCCCCCCCCccchhhcccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSA----IYNRGIL--GAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~----~~~RGli--g~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
+|||+|||.|.++.+|.+...= |.-.|.. .-+.. +-+.|+- -...|.-+ .. .+..||+|-+..+|..
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~~- 196 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLMF- 196 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhhh-
Confidence 7999999999999998776532 3333443 33332 3345651 11122211 11 2689999998887753
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe---cCh-----------HHHHHHHhhhhcCCceEEEee
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR---DEK-----------SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~---d~~-----------~~~~~~~~~~~~~~W~~~~~~ 595 (617)
.++-.+..++-+|-|+|+|||++++- +.. -.-.+++++.+. |++....
T Consensus 197 ---l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 ---LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 23345778999999999999996552 110 123456666665 8887653
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00073 Score=72.81 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=58.1
Q ss_pred eEEeccccccchhhhccCC-C-eEEEEeccCCCC-chhHH----HHhhcccccccccCCCCCCCCCccchhhcccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSL-P-VWVMNIVPISMK-NTLSA----IYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~-~-v~vmnv~p~~~~-~~l~~----~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
.|+|+|||.|.+++++... | .-|. -.|.. .-|.. +-+.|+-+.++ +...++.-+..||+|-++--|-.-
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~---~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLT---LSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEE---EEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 5999999999999988764 3 2222 22222 22221 12234433222 233344346899999988766310
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
...+.-..+.++-++-|.|+|||.++|-
T Consensus 275 -~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 275 -IQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred -ccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 0011123468899999999999999885
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00013 Score=71.67 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=77.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.|.+|+|+|||||.++...+-.|.. .+.++|+++.+++.++++ +..+.+.+.|+.++. ..||.|+.+--+-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCc
Confidence 3456999999999999888888865 678889999999998876 336888888887764 6789888774332
Q ss_pred cccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.+.. ....+|..+.+.- -.+.+.... .. .+-+++.++..|+.+...
T Consensus 120 ~~~rhaDr~Fl~~Ale~s----~vVYsiH~a------~~--~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 120 SQRRHADRPFLLKALEIS----DVVYSIHKA------GS--RDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cccccCCHHHHHHHHHhh----heEEEeecc------cc--HHHHHHHHHhcCCeEEEE
Confidence 2221 1223444444443 233332111 11 334788899999877653
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=68.53 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=64.3
Q ss_pred CCeEEEECCCCcH-HHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCC-CCCeeEEEecccccccc
Q 039518 229 VFQVLDVGCGVAS-FSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYP-SSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 229 g~rVLDIGCGtG~-~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~-d~sFDlV~~s~~l~h~~ 306 (617)
+.+|||||||+|. ++..|++.|. ++.++|+++..++.+++++. .+...|+.+-.+. -+.+|+|.+.+. +
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4579999999996 9999998876 67788999999999998875 5566666544332 356999998763 2
Q ss_pred cchHHHHHHHHHhccCCeEEEEE
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis 329 (617)
.+....+.++.+-+. .-++|.
T Consensus 88 ~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 88 RDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHHcC--CCEEEE
Confidence 345556666666553 345553
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=81.92 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=80.9
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCC-CCCCCeeEEE--
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLP-YPSSSFEMVH-- 297 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lp-f~d~sFDlV~-- 297 (617)
..+|.+|||+++|.|.=+.++++.--..-.+.++|+++..++..+++ |+. +.+...|...++ ...+.||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 46778899999999988888877521112577889999988777655 554 455556665553 2345799999
Q ss_pred --ecccccccccch------------------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc
Q 039518 298 --CSRCRVDWHAND------------------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM 354 (617)
Q Consensus 298 --~s~~l~h~~~d~------------------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~ 354 (617)
||.. -.+..++ .++|..+.++|||||+++.++-.......+ +.++.++++.
T Consensus 191 aPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE-----~vV~~~L~~~ 261 (470)
T PRK11933 191 APCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ-----AVCLWLKETY 261 (470)
T ss_pred CCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH-----HHHHHHHHHC
Confidence 6521 1111121 457899999999999999987644422211 1255666654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.7e-05 Score=76.93 Aligned_cols=95 Identities=17% Similarity=0.296 Sum_probs=61.3
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHHh----hcccc---cc-cccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIYN----RGILG---AF-HDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~~----RGlig---~~-~~~~~~f~typrtyDl~H~~~~ 538 (617)
+.|||+|||.|+++..+.+. +.-|.-+-. +++++..+-+ .|+-+ +. .|..+. .+|.+||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~--s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTI--SPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 36999999999998887543 222222211 2245444443 35422 22 222111 24678999999888
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
|.+. . +...++-++.|+|+|||++++.+.
T Consensus 77 l~~~---~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHI---K---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhC---C---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8754 2 357899999999999999999753
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.5e-05 Score=76.22 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=63.5
Q ss_pred eeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCCCccchhhcccccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~ 544 (617)
-..|||+|||.|.++.+|..+ ..- |+=.|-. ..+..+-++++-=+..|- +.++ ...+||+|+++.+|-+.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~---v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~-- 102 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAV---IEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWV-- 102 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhC--
Confidence 378999999999999888754 222 2223333 667777777742122222 2222 13689999998888643
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. +...+|-|+=|+|+|||++++.
T Consensus 103 -~---d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 -P---EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -C---CHHHHHHHHHHhCCCCcEEEEE
Confidence 2 3467899999999999999986
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.4e-05 Score=81.18 Aligned_cols=102 Identities=12% Similarity=0.224 Sum_probs=67.0
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhc--ccccccccCCCCCCCCCccchhh
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~f~typrtyDl~H 534 (617)
+.+++..+ ..|||+|||.|+++..+.+. ++- |+-.|-. .++..+-+|. + .+ .-.+..+...+.+||.|.
T Consensus 161 ~~l~l~~g--~rVLDIGcG~G~~a~~la~~~g~~---V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 161 RKLQLKPG--MRVLDIGCGWGGLARYAAEHYGVS---VVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHhCCCCC--CEEEEeCCCccHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEE
Confidence 33446666 47999999999999888653 432 2223333 6766666653 2 11 111112222357899999
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+.++|.+. ..-....++-++.|+|+|||++++.
T Consensus 234 s~~~~ehv----g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 234 SVGMFEHV----GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EeCchhhC----ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 88888742 2334568899999999999999996
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=8.3e-05 Score=77.04 Aligned_cols=104 Identities=17% Similarity=0.287 Sum_probs=64.0
Q ss_pred HHhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHHHhhc----cccc-ccccCCCCCCCC-C
Q 039518 458 WQLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAIYNRG----ILGA-FHDWCEPFSTYP-R 528 (617)
Q Consensus 458 ~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~~~RG----lig~-~~~~~~~f~typ-r 528 (617)
...+++..+ ..|||+|||.|+++..|... .|..+.+. ++.+..+-+|- -+-. ..|.. .. .|| .
T Consensus 45 l~~l~l~~~--~~VLDiGcG~G~~a~~la~~~~~~v~giD~s----~~~~~~a~~~~~~~~~i~~~~~D~~-~~-~~~~~ 116 (263)
T PTZ00098 45 LSDIELNEN--SKVLDIGSGLGGGCKYINEKYGAHVHGVDIC----EKMVNIAKLRNSDKNKIEFEANDIL-KK-DFPEN 116 (263)
T ss_pred HHhCCCCCC--CEEEEEcCCCChhhHHHHhhcCCEEEEEECC----HHHHHHHHHHcCcCCceEEEECCcc-cC-CCCCC
Confidence 333445554 47999999999998888543 23333322 24555555442 1111 11211 11 144 7
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
+||+|++...+-+. ..-....+|-|+-|+|+|||++++.|-
T Consensus 117 ~FD~V~s~~~l~h~----~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 117 TFDMIYSRDAILHL----SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CeEEEEEhhhHHhC----CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999987665532 122456799999999999999999863
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=72.28 Aligned_cols=93 Identities=14% Similarity=0.261 Sum_probs=59.3
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHH----Hhhccc--ccccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAI----YNRGIL--GAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~----~~RGli--g~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
.+|||+|||.|.++.+|..+.- .|.-.|.. +.+..+ -+.|+- ....|.. .++ ++.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccccc
Confidence 4799999999999988876542 33334443 444332 234542 1122221 122 3568999998877753
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
. +.-....++-++.|.|+|||++++
T Consensus 107 ~----~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 L----QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred C----CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 2 333566899999999999998544
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0002 Score=73.74 Aligned_cols=96 Identities=10% Similarity=0.040 Sum_probs=67.9
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CCC------CCCCeeEE
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LPY------PSSSFEMV 296 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lpf------~d~sFDlV 296 (617)
++|||||+++|.-+..|+..-.....++.+|.++...+.|++. |. .+.+..+++.+ |+- ..++||+|
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i 160 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI 160 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEE
Confidence 3599999999999998886422222577778888888888764 43 46667776422 221 13689999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEE
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
+.- +.......++..+.++|+|||.+++.
T Consensus 161 FiD----adK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 161 FVD----ADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred Eec----CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 843 33444567888889999999998874
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00061 Score=67.31 Aligned_cols=98 Identities=14% Similarity=0.042 Sum_probs=65.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CC-C-CC-CCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LP-Y-PS-SSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lp-f-~d-~sFDlV~~ 298 (617)
+.+|||++||+|.++..+++++.. .++.+|.++.+++.++++ +. ++.+...|+.+ +. + .. ..||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 457999999999999999999874 577889999998887765 33 35667777633 22 1 12 24788875
Q ss_pred cccccccc-cchHHHHHHH--HHhccCCeEEEEEeC
Q 039518 299 SRCRVDWH-ANDGILLKEV--DRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~-~d~~~~L~el--~RvLrPGG~Liis~p 331 (617)
-- ++. .....++..+ ..+|+++|.+++..+
T Consensus 128 DP---Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DP---PFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred Cc---CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 32 111 1233444444 347899998888654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00069 Score=72.82 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~~ 298 (617)
.++||.||+|.|..+..+++... ...++.+|+++..++.|++.. .++.+...|... +...+++||+|++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 35699999999999998887532 236788899999999999763 245667766533 2334578999996
Q ss_pred ccccccccc------chHHHHH-HHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHA------NDGILLK-EVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~------d~~~~L~-el~RvLrPGG~Liis~ 330 (617)
- +..++.. -..++++ .+.+.|+|||.+++..
T Consensus 183 D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 D-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred c-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 4 2222210 1245777 8999999999988754
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00089 Score=69.86 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=90.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHH----HhCCC--cEEEEecCCC---CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFAL----ERGIG--AMISALSTKQ---LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~----erg~~--~~~~~~d~~~---Lpf~d~sFDlV~~ 298 (617)
.-+||||.||.|......+..... ..++.-.|.++..++..+ ++|.. +.+..+|+.+ +.--+-..++++.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 457999999999876666655332 347777899999887665 45664 3777777533 2212335789998
Q ss_pred cccccccccc--hHHHHHHHHHhccCCeEEEEEeCCCCCCC---------CCChhhH-------HHHHHHHHHcCceEEE
Q 039518 299 SRCRVDWHAN--DGILLKEVDRVLRPNGYFVYSAPPAYRKD---------KDYPLIW-------DKLVNLTTAMCWKLIA 360 (617)
Q Consensus 299 s~~l~h~~~d--~~~~L~el~RvLrPGG~Liis~p~~~~~~---------~~~~~~W-------~~le~La~~~gw~~v~ 360 (617)
+....-+.++ ....|.-+.+.|.|||+++.+..|-.... +..+..| .+|.++.+.+||+.+.
T Consensus 216 sGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 216 SGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKID 295 (311)
T ss_pred ecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhh
Confidence 8755555533 34579999999999999999875322211 1111123 3499999999998776
Q ss_pred Ee
Q 039518 361 RK 362 (617)
Q Consensus 361 ~~ 362 (617)
..
T Consensus 296 q~ 297 (311)
T PF12147_consen 296 QR 297 (311)
T ss_pred he
Confidence 44
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=5.4e-05 Score=66.84 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=59.4
Q ss_pred eeEEeccccccchhhhccC--CCeEEEEeccCCCCchhHHHH----hhcccccccccCCCC---CCCCCccchhhccc-c
Q 039518 469 RNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMKNTLSAIY----NRGILGAFHDWCEPF---STYPRTYDLLHANH-L 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~~~l~~~~----~RGlig~~~~~~~~f---~typrtyDl~H~~~-~ 538 (617)
..|||+|||.|.++.+|.+ ...=|..|=+.. ..+..+- +.++-.-++--+..+ ...+..||+|.+.+ .
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 4689999999999999987 444444443322 3333332 233322221112222 33455699999988 2
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+..+ -+.-....+|=++-+.|+|||+++|++
T Consensus 81 ~~~~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFL---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGC---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2212 111223467888999999999999974
|
... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00024 Score=75.01 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=54.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++.+. .+.++|+++.+++.++++ + .++.+..+|+...++ ..||.|+++.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANV 109 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecC
Confidence 4566799999999999999998764 567789999999988875 2 247788888766654 3689988763
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0003 Score=76.81 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=70.6
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.+|||++||+|.++..++.... +..+.++|+++.+++.++++ ++. +.+...|+..+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 4699999999999999976522 23678899999999988765 343 4466667654321145799998642
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. ..+..++..+.+.+++||.+.++..
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2 2456788888888999999999853
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00021 Score=76.13 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=60.7
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHHh----hcccccccccCCCCCCCCCccchhhcccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIYN----RGILGAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~~----RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
+.|||+|||.|.++.+|..... -|.-|=|...- .+...+-. .+-+.+..-=-+.++. +.+||+|-+.+++-++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYHR 201 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhcc
Confidence 7899999999999888765543 45555554432 33222111 1111111100112222 2589999999888754
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
-+...+|-|+-|+|||||.+|+.
T Consensus 202 ------~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 202 ------KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 35678999999999999999986
|
Known examples to date are restricted to the proteobacteria. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00035 Score=68.25 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=69.9
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCC-C-eEEEEeccCCCCchhHHHH----hhcccccccccCC-CCCCCCCccc
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSL-P-VWVMNIVPISMKNTLSAIY----NRGILGAFHDWCE-PFSTYPRTYD 531 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~-v~vmnv~p~~~~~~l~~~~----~RGlig~~~~~~~-~f~typrtyD 531 (617)
..+.+..+ .+|||+|||.|.++.++... | .=|..+-+.. ..+..+- ..|+-. ..-.+. ....++..||
T Consensus 25 ~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D 99 (187)
T PRK08287 25 SKLELHRA--KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNP--DALRLIKENRQRFGCGN-IDIIPGEAPIELPGKAD 99 (187)
T ss_pred HhcCCCCC--CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCC
Confidence 33444444 57999999999998877542 2 2222222211 2233322 223311 111111 1123457899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCCce
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFLWD 590 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~W~ 590 (617)
+|.+++.. ..+..++-++-|+|+|||++++.+ ..+...++.++++...++
T Consensus 100 ~v~~~~~~---------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 100 AIFIGGSG---------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred EEEECCCc---------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 99865432 245678889999999999999976 456667777888877775
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00064 Score=67.20 Aligned_cols=145 Identities=16% Similarity=0.194 Sum_probs=83.7
Q ss_pred ccccCcccccc--chhhHHHHHHHHH-HhccCCCCCeeeEEeccccccchhhhcc---C--CCeEEEEeccCCCCchhHH
Q 039518 435 RIGITQEEFTT--DTSFWQDQVRHYW-QLMNVNETEIRNAMDMNAYCGGFAVALN---S--LPVWVMNIVPISMKNTLSA 506 (617)
Q Consensus 435 ~~~~~~~~f~~--d~~~w~~~v~~y~-~~~~~~~~~~Rn~mDm~~~~g~faa~l~---~--~~v~vmnv~p~~~~~~l~~ 506 (617)
.+|+..+.|.. +...++..+..-. ..+.+..+ -.|+|+|||.|.|+..+. . ..|..+-+-| ..+..
T Consensus 7 ~~~~~d~~~~~~~~~~~t~~~~r~~~l~~l~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~----~~~~~ 80 (198)
T PRK00377 7 IPGIPDEEFERDEEIPMTKEEIRALALSKLRLRKG--DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE----KAINL 80 (198)
T ss_pred CCCCChHHHccCCCCCCCHHHHHHHHHHHcCCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH----HHHHH
Confidence 34667777776 4457887775421 22334444 479999999999977542 2 2344443322 22332
Q ss_pred HH----hhcccc---c-ccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe-cChHHH
Q 039518 507 IY----NRGILG---A-FHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLI 577 (617)
Q Consensus 507 ~~----~RGlig---~-~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~ 577 (617)
+- .-|+.. + ..|..+..+.++..||.|...+ ....+..++-++-|+|+|||.+++. -..+.+
T Consensus 81 a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 151 (198)
T PRK00377 81 TRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG---------GSEKLKEIISASWEIIKKGGRIVIDAILLETV 151 (198)
T ss_pred HHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence 22 123211 1 1233332233335688876321 2234668899999999999999983 345566
Q ss_pred HHHHhhhhcCCceEEEe
Q 039518 578 TRIRDLAPKFLWDVELH 594 (617)
Q Consensus 578 ~~~~~~~~~~~W~~~~~ 594 (617)
.++...++.+.++..+.
T Consensus 152 ~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 152 NNALSALENIGFNLEIT 168 (198)
T ss_pred HHHHHHHHHcCCCeEEE
Confidence 77777777666655444
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.002 Score=63.01 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=77.7
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHH----HHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQF----ALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~----A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
-+||||||+|..+..|++.-...+-.-..|+++.+.+. |+.++..+..+..|...- +..++.|+++.+.-...-.
T Consensus 46 i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 46 ICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVPTS 124 (209)
T ss_pred eEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCcCC
Confidence 39999999999999998862222233456999988765 444566666666654221 2238899988764222211
Q ss_pred c----------------c----hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 307 A----------------N----DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 307 ~----------------d----~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
+ + ..+++..+..+|.|.|.+++..-..+. -+++.++.+..||....
T Consensus 125 ~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~--------p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 125 DEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK--------PKEILKILEKKGYGVRI 190 (209)
T ss_pred cccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC--------HHHHHHHHhhcccceeE
Confidence 1 1 235677888999999999997642221 23466677777876544
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00014 Score=74.71 Aligned_cols=93 Identities=13% Similarity=0.232 Sum_probs=61.6
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcccc---ccc-ccCCCCC-CCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGILG---AFH-DWCEPFS-TYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGlig---~~~-~~~~~f~-typrtyDl~H~~~~ 538 (617)
.+|||+|||.|.++..|..... +|+-.|.. ..+..+-+ .|+.. +.+ |..+ ++ ..+.+||+|.+..+
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEehhH
Confidence 5899999999999999987753 23333443 44444433 34422 111 1111 22 22489999999888
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+.+. . +...+|-|+-|+|+|||.+++-
T Consensus 122 l~~~---~---~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWV---A---DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhh---C---CHHHHHHHHHHHcCCCeEEEEE
Confidence 8754 2 3457899999999999999874
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00051 Score=66.62 Aligned_cols=121 Identities=11% Similarity=0.120 Sum_probs=73.8
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcccc--cccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGILG--AFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGlig--~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
++|||+|||.|.++.++....- .|+-.|-. ..+..+-+ .|+-. +..|+.+.+ +.+||+|-++--|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCCC
Confidence 4699999999999988876543 23333333 33332222 22211 223443432 469999987765532
Q ss_pred cccC---------------CCCCChhhHHhhhhhcccCCceEEEecChHH-HHHHHhhhhcCCceEEEee
Q 039518 542 YKNR---------------GEVCSLEDIMLEMDLIIRPQGFIIIRDEKSL-ITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 542 ~~~~---------------~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~ 595 (617)
.... ..+..++.+|-|+.|+|+|||.+++.+.... ..++.+.++..-++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 2100 0122356889999999999999998754443 5566666666777777664
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0002 Score=76.45 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=59.5
Q ss_pred eeEEeccccccchhhhccCCC-eEEEEeccCCCC-chhHHHHhhcc-----cccccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMK-NTLSAIYNRGI-----LGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~-~~l~~~~~RGl-----ig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
+.|||+|||.|.|+..|.... -.|.-|=|.... .+...+ .+.+ |-+.+.=-+.++. +.+||+|++.+++-+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 689999999999998886543 234444333211 111111 1111 1111100123444 789999999888764
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. -+...+|-++-|+|+|||.+|+.
T Consensus 202 ~------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 R------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 24568999999999999999986
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00014 Score=71.92 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=60.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHH----HHhhccc---ccccccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSA----IYNRGIL---GAFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~----~~~RGli---g~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
-+|||+|||.|.++..|.++.. +|.-.|.. ..+.. +-++|+- ....|..+ + .++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 4799999999999999987642 22222333 33322 3344542 22334432 2 2357899999887764
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
. .+.-....++-+|-|.|+|||++++
T Consensus 107 ~----~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 F----LEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred h----CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 2333466899999999999999654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00022 Score=70.91 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=63.2
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCC--C-eEEEEeccCCCC-chhHHHHhh--cccccc----cccCCCCCCCCCcc
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSL--P-VWVMNIVPISMK-NTLSAIYNR--GILGAF----HDWCEPFSTYPRTY 530 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~-v~vmnv~p~~~~-~~l~~~~~R--Glig~~----~~~~~~f~typrty 530 (617)
+.+..+ .+|||+|||.|.++..+.+. + .-+.- .|.. +.+..+-++ +..... .|.. .++.-+.+|
T Consensus 15 ~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~~~~v~~---~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~ 88 (241)
T PRK08317 15 LAVQPG--DRVLDVGCGPGNDARELARRVGPEGRVVG---IDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSF 88 (241)
T ss_pred cCCCCC--CEEEEeCCCCCHHHHHHHHhcCCCcEEEE---EeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCc
Confidence 334443 57999999999998887643 1 22222 2323 555666555 111111 1221 122113799
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|+||+..+|.+. . +...++-++-|+|+|||++++.+
T Consensus 89 D~v~~~~~~~~~---~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 89 DAVRSDRVLQHL---E---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred eEEEEechhhcc---C---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 999999888754 2 35788999999999999999854
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00028 Score=74.12 Aligned_cols=114 Identities=14% Similarity=0.192 Sum_probs=67.7
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCC-CCccchhhcccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTY-PRTYDLLHANHLFSHY 542 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~ty-prtyDl~H~~~~~s~~ 542 (617)
.+|||+|||.|.++.++...+.- .|+-.|-. ..+..+.++ |+-......+...... +..||+|.++.+...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~- 237 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV- 237 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH-
Confidence 68999999999987666544321 22223333 334444333 2211122222212222 478999998755442
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 594 (617)
+..++-++-|+|+|||+++++.- .+..+++.+..++- |+....
T Consensus 238 --------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 238 --------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred --------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 34688899999999999999853 23345566655555 766544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0002 Score=70.15 Aligned_cols=130 Identities=12% Similarity=0.225 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhhhcc--CCCeEEEEeccCCCCchhHH----HHhhcc--ccccc-
Q 039518 448 SFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAVALN--SLPVWVMNIVPISMKNTLSA----IYNRGI--LGAFH- 517 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa~l~--~~~v~vmnv~p~~~~~~l~~----~~~RGl--ig~~~- 517 (617)
+.|++.+-.=..++. +. + .+|||+|||.|.++..|. ....=|.-|=+.. +.+.+ +-+.|+ +-+.+
T Consensus 25 ~~~~~~~~d~i~~~~~~~-~--~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~--~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD-G--KKVIDIGSGAGFPGIPLAIARPELKLTLLESNH--KKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC-C--CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHhCCCCeEEEec
Confidence 466665533222222 33 2 589999999998776653 2221222222221 22222 223454 22221
Q ss_pred ccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCC-ceEEEe
Q 039518 518 DWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFL-WDVELH 594 (617)
Q Consensus 518 ~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~-W~~~~~ 594 (617)
|.. .++ ...+||+|-+.. + ..+.+++-++.|+|+|||.+++........++..+.+.++ |.....
T Consensus 100 d~~-~~~-~~~~fD~I~s~~-~---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 100 RAE-DFQ-HEEQFDVITSRA-L---------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred chh-hcc-ccCCccEEEehh-h---------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 221 222 247999987654 2 2355788889999999999999987777777777776644 444433
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=67.78 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEE--Eec--CCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMIS--ALS--TKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~--~~d--~~~Lpf~d~sFDlV~~s~ 300 (617)
...+|||+|||+|...-.+.+.-....+++.+|.|+.+++.++.- +.+.... ... .+..++. ..|+|++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEeh
Confidence 345799999999976555444322445788899999999887753 1111100 001 1122332 239999999
Q ss_pred ccccccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 301 CRVDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 301 ~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
++.+... ....+++.+.+.+.+ +|+|+.|.. +.....-.++.+.+...|+.+++
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt----~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGT----PAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC----hHHHHHHHHHHHHHhhCCCceEC
Confidence 9988773 234466667666655 888887632 12222223355555556666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00017 Score=73.55 Aligned_cols=113 Identities=14% Similarity=0.276 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----ccc--ccccccC
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GIL--GAFHDWC 520 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gli--g~~~~~~ 520 (617)
+.|++.+.... +...+ ..|||++||+|-++-.|.+.-----.|+-.|-. +-|.++-+| |.. =....=.
T Consensus 33 ~~wr~~~~~~~---~~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da 107 (233)
T PF01209_consen 33 RRWRRKLIKLL---GLRPG--DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA 107 (233)
T ss_dssp ----SHHHHHH---T--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT
T ss_pred HHHHHHHHhcc---CCCCC--CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH
Confidence 67888775543 34444 389999999999887775431111133444544 677676655 321 1111113
Q ss_pred CCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 521 EPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 521 ~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|.+| || .+||.|=+...+-.. .+....|-||=|||||||.++|=|
T Consensus 108 ~~lp-~~d~sfD~v~~~fglrn~------~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 108 EDLP-FPDNSFDAVTCSFGLRNF------PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TB---S-TT-EEEEEEES-GGG-------SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhc-CCCCceeEEEHHhhHHhh------CCHHHHHHHHHHHcCCCeEEEEee
Confidence 4455 34 999998876665543 457789999999999999998853
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00029 Score=73.16 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=56.0
Q ss_pred eeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhhcc-ccc-ccccC-CCCCCCCCccchhhccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNRGI-LGA-FHDWC-EPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~RGl-ig~-~~~~~-~~f~typrtyDl~H~~~~~s~ 541 (617)
-.+|||+|||.|.+++.|.+. +.-..+|+-.|-. +.+..+-+|.- +.. ..|-. .+|+ +.+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~--~~sfD~I~~--~~~- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA--DQSLDAIIR--IYA- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCc--CCceeEEEE--ecC-
Confidence 356999999999999888542 1101234444554 67777766641 111 11211 1333 379999974 232
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
...+-|+.|+|+|||++|+..
T Consensus 161 ----------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 ----------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred ----------CCCHHHHHhhccCCCEEEEEe
Confidence 124679999999999999873
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00028 Score=75.43 Aligned_cols=95 Identities=9% Similarity=0.185 Sum_probs=64.9
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----c---cccccccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----I---LGAFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----l---ig~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
..|||+|||.|.|+..|..... +|.-.|.. ..+.++-++. + |-..+.=.|.++..+.+||+|=+..++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3799999999999988876532 33344554 5555555442 2 1122211233443347999999988888
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+. . +...+|-|+-|+|+|||.+++.+
T Consensus 210 Hv---~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HV---A---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hc---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 65 2 45789999999999999999974
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00054 Score=66.04 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=81.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHH---------hhcccccccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIY---------NRGILGAFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~---------~RGlig~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
..|||+|||.|.++..|...+. +|.-.|-. +.+..+. +||+.-+-+|+.+.++. ..||+|=++.-
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p 99 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNPP 99 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECCC
Confidence 5799999999999999876643 33333333 3444331 22244455677666543 58999854433
Q ss_pred ccc------------cccCC---CCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCCceEEEeeccccCCC
Q 039518 539 FSH------------YKNRG---EVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFLWDVELHSLENREKK 602 (617)
Q Consensus 539 ~s~------------~~~~~---~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~ 602 (617)
|.. +.... ....+..++-++.|+|+|||.+++-- .....+++.+++...-|+......+.-..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 179 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFE 179 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCCc
Confidence 321 00001 12234678999999999999987642 222345677788877887665544434443
Q ss_pred ceeEEEEEe
Q 039518 603 MESVLICRK 611 (617)
Q Consensus 603 ~~~~l~~~k 611 (617)
.-.+++.+|
T Consensus 180 ~~~~~~~~~ 188 (188)
T PRK14968 180 ELIVLELVK 188 (188)
T ss_pred eEEEEEEeC
Confidence 344444443
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00047 Score=71.25 Aligned_cols=133 Identities=15% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH--------------------hCCC------------
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE--------------------RGIG------------ 275 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e--------------------rg~~------------ 275 (617)
.|.++||||||.-..-..-+.. ..-+|+..|..+..++..++ .|..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4667999999996553222222 23355566666655442221 0110
Q ss_pred -c-EEEEecCCCC-CCCC-----CCeeEEEecccccccccch---HHHHHHHHHhccCCeEEEEEeCCC--CCCC-----
Q 039518 276 -A-MISALSTKQL-PYPS-----SSFEMVHCSRCRVDWHAND---GILLKEVDRVLRPNGYFVYSAPPA--YRKD----- 337 (617)
Q Consensus 276 -~-~~~~~d~~~L-pf~d-----~sFDlV~~s~~l~h~~~d~---~~~L~el~RvLrPGG~Liis~p~~--~~~~----- 337 (617)
+ .+...|+.+. |+.. ..||+|++++|+....++. ..+++++.++|||||.|++.+-.. ++..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 1 2344555333 3332 3599999999998777665 457999999999999999985311 0000
Q ss_pred CCChhhHHHHHHHHHHcCceEEEEe
Q 039518 338 KDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 338 ~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+.....-+.+.+.++.+|+.+...+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 0011112348889999999888754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00032 Score=69.81 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=73.9
Q ss_pred eeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHH----hhccc--c-cccccCCCCCC-C-CCccchhh
Q 039518 468 IRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIY----NRGIL--G-AFHDWCEPFST-Y-PRTYDLLH 534 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~----~RGli--g-~~~~~~~~f~t-y-prtyDl~H 534 (617)
-.+|||+|||.|.++..|... .|+.+-+.| +.+..+- +.|+- - +..|+.+.++. + +.+||+|-
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~----~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE----PGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEech----HHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEE
Confidence 478999999999998887543 234433322 2222222 22331 1 12233133332 3 47899987
Q ss_pred ccccccccc--cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCCceEEEe
Q 039518 535 ANHLFSHYK--NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 535 ~~~~~s~~~--~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
........+ ....+.....+|-++.|+|+|||.+++. +.......+.+.+..--|.+.+.
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 543221100 0122334578999999999999999996 67777777777777777877643
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=69.49 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=63.2
Q ss_pred cCCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhh-cccccccccCCCCCCCC---Cccch
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEPFSTYP---RTYDL 532 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~f~typ---rtyDl 532 (617)
.|.++. +|||+|||.|+|...|.+. .|+.+-+.|.-..+.+.++-+| +++-+..|-+.+. .|+ -++|+
T Consensus 129 ~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDv 205 (293)
T PTZ00146 129 PIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDV 205 (293)
T ss_pred ccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCE
Confidence 366774 7999999999998888643 3666655443222455555554 5777777776542 122 45777
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|=++-.. .+ ....+++|+.|+|+|||+++|.
T Consensus 206 V~~Dva~------pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ------PD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC------cc--hHHHHHHHHHHhccCCCEEEEE
Confidence 7332210 11 2225677999999999999994
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00019 Score=68.73 Aligned_cols=136 Identities=15% Similarity=0.306 Sum_probs=89.0
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-CCCc--EEEEe-----c--CCCCCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-GIGA--MISAL-----S--TKQLPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-g~~~--~~~~~-----d--~~~Lpf~d~sFDlV~~ 298 (617)
|.+||++|.|--.++..|....+...+|.-.|.++..++..++- ..+. .+... . ..+......+||.|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 35699999996666555555444445666778888887766542 1110 00000 0 1111223468999999
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee-eeEEEeecc
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI-QTAIWIKEE 372 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~-~~~IwqKp~ 372 (617)
+.|+. +.+..+.++..+.++|+|.|..++..|.. +...+.+.+.+...||.+....+ +..|||+-.
T Consensus 110 ADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRR-------g~sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 110 ADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRR-------GQSLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred ccchh-HHHHHHHHHHHHHHHhCcccceeEecCcc-------cchHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 99875 34466789999999999999988887632 22366688888889998876544 356776654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00081 Score=69.07 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=71.7
Q ss_pred eeEEeccccccchhhhccCCC---eEEEEeccCCCCchhHHHHhh----cccccccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP---VWVMNIVPISMKNTLSAIYNR----GILGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~---v~vmnv~p~~~~~~l~~~~~R----Glig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
.+|||+|||.|..+.++.... |+.+-+-| ..+..+-++ |+-...+ +..-..+||+|.|+-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~----~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH----HHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH
Confidence 579999999998877765443 33333222 333333333 3311111 1100116999986543331
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEe
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
+..++-++-|+|+|||++|+++- .+....+.+.++...++......+ +.-..++++|
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~ 249 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKK 249 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEe
Confidence 34677899999999999999864 344567777777777876654322 1234555555
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00049 Score=70.42 Aligned_cols=111 Identities=14% Similarity=0.312 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc-cc-----cccccC
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI-LG-----AFHDWC 520 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl-ig-----~~~~~~ 520 (617)
..|++.+- ..+++.+| -+|||++||+|=+|..+.+.-= .-.|+-.|-. +-|.++-+|-- .| ..+-==
T Consensus 37 ~~Wr~~~i---~~~~~~~g--~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA 110 (238)
T COG2226 37 RLWRRALI---SLLGIKPG--DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA 110 (238)
T ss_pred HHHHHHHH---HhhCCCCC--CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEech
Confidence 56766552 22334444 6899999999999998864421 3334444555 67777776653 11 112222
Q ss_pred CCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 521 EPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 521 ~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.+| || .|||++=++.-+-+. =+++..|-||-|||+|||-+++=
T Consensus 111 e~LP-f~D~sFD~vt~~fglrnv------~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 111 ENLP-FPDNSFDAVTISFGLRNV------TDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhCC-CCCCccCEEEeeehhhcC------CCHHHHHHHHHHhhcCCeEEEEE
Confidence 4456 44 999998877666543 26788999999999999987774
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00047 Score=70.59 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=66.6
Q ss_pred CCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhhc-ccccc-cccCCCCCCCCCccchhhccccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNRG-ILGAF-HDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~RG-lig~~-~~~~~~f~typrtyDl~H~~~~~ 539 (617)
..-.+|||+|||.|.++..|... .|...-+.| ..+..+-++- =+.+. .|-. .+. .+.+||+|+++..|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~----~~i~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l 103 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP----AMLAEARSRLPDCQFVEADIA-SWQ-PPQALDLIFANASL 103 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHhCCCCeEEECchh-ccC-CCCCccEEEEccCh
Confidence 33478999999999999888643 233332211 3333333331 01111 1211 111 23799999999888
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec--Ch--HHHHHHHhhhhcCCceE
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD--EK--SLITRIRDLAPKFLWDV 591 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d--~~--~~~~~~~~~~~~~~W~~ 591 (617)
... . +...+|-+|-|+|+|||.+++.- .. .....+++++....|..
T Consensus 104 ~~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 104 QWL---P---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred hhC---C---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 643 2 34679999999999999999962 11 11123455555555643
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0023 Score=67.62 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.|||||||+|.++...++.|.. .+.+++.| +|.+.|++- .+ .+.+..+.++++.+|+ ..|+|++--..
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEeccch
Confidence 344999999999999888888765 45566644 555777653 22 2455566778877764 59999974322
Q ss_pred cccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.... +..-+...-..|.|+|.|..+-+.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 2112 222233344569999999987654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00034 Score=69.70 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=59.5
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc---ccccccccCCCCCCCCCccchhhcccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG---ILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG---lig~~~~~~~~f~typrtyDl~H~~~~~s~~~~ 544 (617)
..|||+|||.|.|...|....- ...+.-.|.. ..+..+-++. +.-+..|. +.++..+.+||+|.+..++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc--
Confidence 5799999999999988865320 0011222222 3333333332 11122222 2233334899999988887632
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+...+|-++.|+|+|||++++..
T Consensus 112 ----~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 ----DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ----cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 245689999999999999999963
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.003 Score=62.36 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=65.0
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH----hCCC-cEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE----RGIG-AMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e----rg~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
+++|||+|.|.-+..|+=..+.. .++-+|....-+.+.+. -+++ +.+....++. +....+||+|++- ++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~-~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR-Av~-- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDL-QVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR-AVA-- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTS-EEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE-SSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCC-cEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEee-hhc--
Confidence 69999999998887776543322 56667777766554433 3665 7777777777 5567889999965 332
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEe
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
....++.-+..+|++||.+++--
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEc
Confidence 56688999999999999998853
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0034 Score=67.21 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=64.8
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
...+|+++||+||++|.|+..|+++|. .|+++|..+ +-.. ......+.....+..+...+.+.+|.++|-.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm---- 278 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQS-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDM---- 278 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHh-hhCCCCEEEEeccCcccCCCCCCCCEEEEec----
Confidence 346788999999999999999999987 455667443 2122 2223346666655444322367899999753
Q ss_pred cccchHHHHHHHHHhccCC--eEEEEEe
Q 039518 305 WHANDGILLKEVDRVLRPN--GYFVYSA 330 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPG--G~Liis~ 330 (617)
.+.|...+.-+.+.|..| ..+++..
T Consensus 279 -ve~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 279 -VEKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred -ccCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 346888888888888777 4555543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0041 Score=64.67 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=67.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCCCCCCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
..++||=||.|.|..+..+++..- .++-+|+++..++.+++.. .++.+.. ... ....++||+|+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEE
Confidence 346799999999999999998852 7778899999999999842 2233332 111 112368999995
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-. + ....+.+.+.|.|+|||.++.-..
T Consensus 146 Ds-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 146 LQ-E-----PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred cC-C-----CChHHHHHHHHhcCCCcEEEECCC
Confidence 42 1 346788999999999999999653
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.004 Score=68.16 Aligned_cols=102 Identities=17% Similarity=0.113 Sum_probs=75.7
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCC-CC---CCCCCeeEEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQ-LP---YPSSSFEMVH 297 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~-Lp---f~d~sFDlV~ 297 (617)
|++|||+=|=||.|+.+.+..|.. +++.+|.|...++.|+++ |+ ++.+.++|+-. +. -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 778999999999999999988874 567779999999999987 43 25677777522 22 2234899999
Q ss_pred eccc--------ccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 298 CSRC--------RVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 298 ~s~~--------l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.--- ......+...++..+.++|+|||.+++++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 6310 1111134466899999999999999998753
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0056 Score=64.43 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=92.6
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHH---HHHHHhCC-C--cE----
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQI---QFALERGI-G--AM---- 277 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~l---q~A~erg~-~--~~---- 277 (617)
..++.|..+.+.... .....+||--|||.|.++..|+..|. ...+.+.|--|+ .++..... + ..
T Consensus 133 pii~~l~~lfp~~~~---~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPf 206 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGK---ERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPF 206 (369)
T ss_pred hHHHHHHhhCCCccc---cccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEee
Confidence 445666666654322 13455799999999999999998876 345556666554 23331100 0 00
Q ss_pred -----------------------------------EEEecCCCC-C--CCCCCeeEEEecccccccccchHHHHHHHHHh
Q 039518 278 -----------------------------------ISALSTKQL-P--YPSSSFEMVHCSRCRVDWHANDGILLKEVDRV 319 (617)
Q Consensus 278 -----------------------------------~~~~d~~~L-p--f~d~sFDlV~~s~~l~h~~~d~~~~L~el~Rv 319 (617)
+..+|+.+. + -..++||+|+..+ ++.-..+.-.+|..+..+
T Consensus 207 Ih~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~i 285 (369)
T KOG2798|consen 207 IHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYKI 285 (369)
T ss_pred eeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHHh
Confidence 000111000 0 1124699998764 344345677899999999
Q ss_pred ccCCeEEEEEeCCCCCCCCCCh--------hhHHHHHHHHHHcCceEEEEe
Q 039518 320 LRPNGYFVYSAPPAYRKDKDYP--------LIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 320 LrPGG~Liis~p~~~~~~~~~~--------~~W~~le~La~~~gw~~v~~~ 362 (617)
|+|||+++=.+|..+....+++ ...+.+..+++..||+++..+
T Consensus 286 Lk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 286 LKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred ccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 9999999998886544333222 235668999999999999865
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0042 Score=62.07 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++..|||+-||.|.|+..+++.+. ...+.++|+++.+++..+++ ++. +....+|...+.- .+.||-|++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 3456799999999999999998321 12467779998888777654 333 5567788777654 78899998753
Q ss_pred cccccccchHHHHHHHHHhccCCeEEE
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Li 327 (617)
+..-..+|..+.+++++||.+-
T Consensus 178 -----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 -----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----TSSGGGGHHHHHHHEEEEEEEE
T ss_pred -----hHHHHHHHHHHHHHhcCCcEEE
Confidence 3233468899999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0034 Score=63.87 Aligned_cols=97 Identities=11% Similarity=0.254 Sum_probs=54.7
Q ss_pred hccCCCCCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhH----HHHhh-cccccccccCCCCC--CCCC
Q 039518 460 LMNVNETEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLS----AIYNR-GILGAFHDWCEPFS--TYPR 528 (617)
Q Consensus 460 ~~~~~~~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~----~~~~R-Glig~~~~~~~~f~--typr 528 (617)
.+++..+. .|||+|||.|++...|.+. .|+.+-+-| .-|. .+-+| ++.-+..|-.++.. ..+.
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccc
Confidence 36677774 6999999999999888654 344443322 2222 22222 23344445443311 1234
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
+||.|= +.. ...=....+|-|+-|+|+|||.++|
T Consensus 141 ~~D~i~-----~d~---~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 141 KVDVIY-----QDV---AQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred cCCEEE-----ECC---CChhHHHHHHHHHHHhcCCCcEEEE
Confidence 577752 111 1000012346799999999999999
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0029 Score=66.68 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=66.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccC------CCcEEEeeecCCcHHHHHHHHHh----CCC---cEEEEecCCCCCC-C-CC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL------DIQTMSFAPKDGHENQIQFALER----GIG---AMISALSTKQLPY-P-SS 291 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~------gv~~v~v~~iDis~~~lq~A~er----g~~---~~~~~~d~~~Lpf-~-d~ 291 (617)
.++.+|||..||+|.|...+.+. ......+.+.|+++.++..|+-+ +.. ..+...|.-..+. . .+
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 34557999999999998887652 11234788999999998887653 322 2366666533332 2 47
Q ss_pred CeeEEEeccccccc--c-----c-------------chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 292 SFEMVHCSRCRVDW--H-----A-------------NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 292 sFDlV~~s~~l~h~--~-----~-------------d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.||+|+++--.... . . ....++..+.+.|++||++++..|.
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 89999987322211 0 0 0124788899999999999998874
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0085 Score=62.97 Aligned_cols=99 Identities=15% Similarity=0.050 Sum_probs=72.0
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCC-CCCCCCeeEEEec
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQL-PYPSSSFEMVHCS 299 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~L-pf~d~sFDlV~~s 299 (617)
++||-||.|.|..+..+++... ...++.+|++++.++.+++.. ..+.+...|.... .-...+||+|++-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 5799999999999999998864 337788899999999999862 2245555554222 2123489999964
Q ss_pred cccccccc----chHHHHHHHHHhccCCeEEEEEe
Q 039518 300 RCRVDWHA----NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 300 ~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.-+... .-..+++.+.|.|+++|.++.-.
T Consensus 157 -~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 -STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred -CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 2322110 12679999999999999999964
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00043 Score=70.24 Aligned_cols=99 Identities=10% Similarity=0.149 Sum_probs=56.6
Q ss_pred eeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCC-Cccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYP-RTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typ-rtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++..|.+. |-+ +++-.|-. +-|..+-++ +...-.+--+..+..+| ..+|+|.+...+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 57999999999998877542 211 12222332 344333322 21100010111222223 468988776666
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.+. ..=....+|-||-|+|+|||.+++.|.
T Consensus 133 ~~~----~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 133 QFL----PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhC----CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 532 111235789999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0044 Score=68.69 Aligned_cols=98 Identities=21% Similarity=0.369 Sum_probs=80.0
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC----CcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI----GAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~----~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
++|-+|||.-.+...+.+-|.. +|+.+|+|.-.++....++. ...+...|+..+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 5999999999999999888776 78888999999888877753 25677888999999999999999877666655
Q ss_pred cch---------HHHHHHHHHhccCCeEEEEEe
Q 039518 307 AND---------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 307 ~d~---------~~~L~el~RvLrPGG~Liis~ 330 (617)
.+- ...+.++.|+|+|||.++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 332 235899999999999977654
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0017 Score=63.97 Aligned_cols=115 Identities=15% Similarity=0.182 Sum_probs=73.8
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEE
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISA 280 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~ 280 (617)
+..-+.+-+++... . -.+.++||+=||+|.++...+++|.. .++.+|.+...++..+++ +.. +.+..
T Consensus 26 drvrealFniL~~~-~----~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 26 DRVREALFNILQPR-N----LEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp HHHHHHHHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred HHHHHHHHHHhccc-c----cCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 34445566666432 0 24567999999999999999999976 566789999988877765 332 45555
Q ss_pred ecC-CCC---CCCCCCeeEEEecccccccccc--hHHHHHHHH--HhccCCeEEEEEeC
Q 039518 281 LST-KQL---PYPSSSFEMVHCSRCRVDWHAN--DGILLKEVD--RVLRPNGYFVYSAP 331 (617)
Q Consensus 281 ~d~-~~L---pf~d~sFDlV~~s~~l~h~~~d--~~~~L~el~--RvLrPGG~Liis~p 331 (617)
.|. ..+ ......||+|+.-- ++... ...++..+. .+|+++|.+++...
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 553 222 12467899999652 33323 256777776 79999999999764
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0019 Score=65.55 Aligned_cols=105 Identities=12% Similarity=0.199 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCC
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFST 525 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~t 525 (617)
..|++.+-...... +..+ .+|||+|||.|-++..|.+. +. +|+-.|-. +-|..+-+++ ...+.-.+.+|.
T Consensus 35 ~~wr~~~~~~l~~~-~~~~--~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~ 106 (226)
T PRK05785 35 VRWRAELVKTILKY-CGRP--KKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEALPF 106 (226)
T ss_pred HHHHHHHHHHHHHh-cCCC--CeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhCCC
Confidence 56877654432211 1222 58999999999999888765 33 44445555 5666665553 122333344442
Q ss_pred CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCc
Q 039518 526 YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQG 566 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G 566 (617)
=..+||+|-+...+-++ -+.+..|-||-|+|||.+
T Consensus 107 ~d~sfD~v~~~~~l~~~------~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 107 RDKSFDVVMSSFALHAS------DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCEEEEEecChhhcc------CCHHHHHHHHHHHhcCce
Confidence 23899999987765433 356789999999999953
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0027 Score=68.78 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=61.6
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCC-C-------C---C-----
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQL-P-------Y---P----- 289 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~L-p-------f---~----- 289 (617)
+|||++||+|.++..|++... .++++|+++.+++.|+++ ++ ++.+..+|+.++ + + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 599999999999998887642 688899999999998875 33 466777775442 1 1 0
Q ss_pred CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
...||+|+.---. ..-...++..+. +|++.++++..
T Consensus 277 ~~~~d~v~lDPPR---~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 277 SYNCSTIFVDPPR---AGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred cCCCCEEEECCCC---CCCcHHHHHHHH---cCCcEEEEEcC
Confidence 1237998854211 111234444443 48999999874
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0033 Score=68.60 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=54.4
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHH-HHHHHhCCCcE-EEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQI-QFALERGIGAM-ISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~l-q~A~erg~~~~-~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
+||-++=..|.++..|+..++.. ++-.=++.... +.+..++.+.. +...+.. -+++ +.+|+|+. .++..
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~--~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~-~~~~-~~~d~vl~-----~~PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYS--IGDSYISELATRENLRLNGIDESSVKFLDST-ADYP-QQPGVVLI-----KVPKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCe--eehHHHHHHHHHHHHHHcCCCcccceeeccc-cccc-CCCCEEEE-----EeCCC
Confidence 49999999999999999766642 21111222222 23334455432 2232221 1223 44999873 34433
Q ss_pred ---hHHHHHHHHHhccCCeEEEEEe
Q 039518 309 ---DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 309 ---~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+..|..+.++|.||+.++...
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 4567889999999999987654
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0079 Score=68.36 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=68.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCC-------cEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCC--C---CCCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDI-------QTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQ--L---PYPS 290 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv-------~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~--L---pf~d 290 (617)
...+|||.|||+|.|...++.+.. ....+.+.|+++..++.++.+ + ....+...+... + .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 345799999999999988875421 135789999999999988765 1 223333333211 1 1112
Q ss_pred CCeeEEEeccccccccc----------------------------------c-----------hHHHH-HHHHHhccCCe
Q 039518 291 SSFEMVHCSRCRVDWHA----------------------------------N-----------DGILL-KEVDRVLRPNG 324 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~~~----------------------------------d-----------~~~~L-~el~RvLrPGG 324 (617)
+.||+|+++--..-... + ...++ ..+.++|++||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 57999998732221100 0 01123 45789999999
Q ss_pred EEEEEeCCCCCC
Q 039518 325 YFVYSAPPAYRK 336 (617)
Q Consensus 325 ~Liis~p~~~~~ 336 (617)
++.+..|.....
T Consensus 191 ~~~~I~P~s~l~ 202 (524)
T TIGR02987 191 YVSIISPASWLG 202 (524)
T ss_pred EEEEEEChHHhc
Confidence 999999865443
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.00056 Score=65.10 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=45.8
Q ss_pred CCCCCCCCCCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCC
Q 039518 283 TKQLPYPSSSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYR 335 (617)
Q Consensus 283 ~~~Lpf~d~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~ 335 (617)
....+|.++|.|+|.+.+++.|+. ++...++++.+|+|||||+|-++.|...+
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 456789999999999999999988 44567999999999999999999986543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0014 Score=64.66 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=57.8
Q ss_pred eeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhhc-----ccccccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNRG-----ILGAFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~RG-----lig~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
.+|||+|||.|.++.++... .+..+.+. +..+..+-++. +--+.+|-.+ .+.-+.+||+|++...
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~----~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS----SEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFG 115 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECC----HHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeee
Confidence 68999999999998887533 23333221 13444444432 1111122222 2211368999997766
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+... .....++-++-++|+|||++++.+
T Consensus 116 ~~~~------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNV------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCc------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 6533 346788999999999999999854
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0088 Score=61.90 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=88.9
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCC--CCCee
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYP--SSSFE 294 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~--d~sFD 294 (617)
+.+.||.+|||-|.|+|+++.++++. +.+. .+...|+++...+.|++. + -++.+.+-|+....|. +..+|
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptG-hl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTG-HLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCc-ceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccc
Confidence 45678889999999999999999876 3322 455568899988888764 3 3577777777665553 57799
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCe-EEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEee
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNG-YFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIK 370 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG-~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqK 370 (617)
.|+. .++ .|-.++--++.+||.+| +|+--.|.+. .-++--+++++.||-.+. .+.+|.+
T Consensus 180 aVFL-----DlP-aPw~AiPha~~~lk~~g~r~csFSPCIE--------Qvqrtce~l~~~gf~~i~---~vEv~~~ 239 (314)
T KOG2915|consen 180 AVFL-----DLP-APWEAIPHAAKILKDEGGRLCSFSPCIE--------QVQRTCEALRSLGFIEIE---TVEVLLV 239 (314)
T ss_pred eEEE-----cCC-ChhhhhhhhHHHhhhcCceEEeccHHHH--------HHHHHHHHHHhCCCceEE---EEEeehh
Confidence 9973 334 67778888888999887 5554444321 133455677788997765 3444443
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.018 Score=62.53 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=83.7
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCC--CC-CCCee
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLP--YP-SSSFE 294 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lp--f~-d~sFD 294 (617)
+...+|.+|||+.++.|.=+.++++.... ..-|.++|+++..++...++ |+. +.+...|...++ .+ .+.||
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 34567888999999999877777776322 22357889999888776654 554 355666655554 12 23599
Q ss_pred EEEe----cc-ccc--------cccc-c-------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH
Q 039518 295 MVHC----SR-CRV--------DWHA-N-------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA 353 (617)
Q Consensus 295 lV~~----s~-~l~--------h~~~-d-------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~ 353 (617)
.|+. +. .++ .+.. + ..++|..+.++|||||.|+.++-.......+. .+..++++
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~-----vV~~~L~~ 306 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE-----VVERFLER 306 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH-----HHHHHHHh
Confidence 9985 21 111 1110 0 13579999999999999999986554333222 25566655
Q ss_pred c-CceEEE
Q 039518 354 M-CWKLIA 360 (617)
Q Consensus 354 ~-gw~~v~ 360 (617)
. .|+.+.
T Consensus 307 ~~~~~~~~ 314 (355)
T COG0144 307 HPDFELEP 314 (355)
T ss_pred CCCceeec
Confidence 4 555443
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0011 Score=67.96 Aligned_cols=98 Identities=7% Similarity=0.097 Sum_probs=57.0
Q ss_pred eeEEeccccccchhhhccC---CC-eEEEEeccCCCCchhHHHHhh----cccccccccCCCCCCCC-Cccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNS---LP-VWVMNIVPISMKNTLSAIYNR----GILGAFHDWCEPFSTYP-RTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~---~~-v~vmnv~p~~~~~~l~~~~~R----Glig~~~~~~~~f~typ-rtyDl~H~~~~~ 539 (617)
..|||+|||.|.++.+|.. .| .-++-|=+.. .-+..+-+| |+..-..-.+..+...| ..||+|-+...+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4699999999999877753 23 3233232221 333333332 33111111122233333 458887766555
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+. ..-....++-||-|+|+|||.+++.|
T Consensus 136 ~~l----~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 136 QFL----EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhC----CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 532 22234579999999999999999986
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0018 Score=64.28 Aligned_cols=151 Identities=16% Similarity=0.252 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHhc-cCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHHhh--cccc---cccccC
Q 039518 449 FWQDQVRHYWQLM-NVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIYNR--GILG---AFHDWC 520 (617)
Q Consensus 449 ~w~~~v~~y~~~~-~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~~R--Glig---~~~~~~ 520 (617)
.|-++.++-.-++ .|...+|+++++.|||-|-|.+.|..+ .+.++-++| .-|..+-+| |+.. .-.|-.
T Consensus 24 ~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~----~Al~~Ar~Rl~~~~~V~~~~~dvp 99 (201)
T PF05401_consen 24 SWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISP----RALARARERLAGLPHVEWIQADVP 99 (201)
T ss_dssp -HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-H----HHHHHHHHHTTT-SSEEEEES-TT
T ss_pred CHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCH----HHHHHHHHhcCCCCCeEEEECcCC
Confidence 4555543323333 389999999999999999999999764 567765544 333333333 1211 111112
Q ss_pred CCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe---cCh-------HHHHHHHhhhhcCCce
Q 039518 521 EPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR---DEK-------SLITRIRDLAPKFLWD 590 (617)
Q Consensus 521 ~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~---d~~-------~~~~~~~~~~~~~~W~ 590 (617)
+..| +.+|||||.+-++--+ .+.=.+..++-.|...|+|||.+|+- |.. -=-+.|.+|+...-=+
T Consensus 100 ~~~P--~~~FDLIV~SEVlYYL---~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~ 174 (201)
T PF05401_consen 100 EFWP--EGRFDLIVLSEVLYYL---DDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTE 174 (201)
T ss_dssp T-----SS-EEEEEEES-GGGS---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEE
T ss_pred CCCC--CCCeeEEEEehHhHcC---CCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhh
Confidence 2222 3999999999887643 33334556788888999999999994 321 1123455555444444
Q ss_pred EEEeeccccCCCceeEEEE
Q 039518 591 VELHSLENREKKMESVLIC 609 (617)
Q Consensus 591 ~~~~~~e~~~~~~~~~l~~ 609 (617)
+.-..-. |....|.-|++
T Consensus 175 ~~~~~~~-~~~~~~~~~~~ 192 (201)
T PF05401_consen 175 VERVECR-GGSPNEDCLLA 192 (201)
T ss_dssp EEEEEEE--SSTTSEEEEE
T ss_pred eeEEEEc-CCCCCCceEee
Confidence 4433322 23334555554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0061 Score=66.18 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=62.5
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCC-C-CC-------------
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQL-P-YP------------- 289 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~L-p-f~------------- 289 (617)
.+|||++||+|.++..|++... .+.++|+++.+++.|+++ ++ ++.+..+|+.++ + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 3599999999999998877532 678889999999988875 44 467777776442 1 10
Q ss_pred -CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 -SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 -d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
...||+|+.---. ..-...++..+. +|++.++++..
T Consensus 285 ~~~~~D~v~lDPPR---~G~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 285 KSYNFSTIFVDPPR---AGLDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred cCCCCCEEEECCCC---CCCcHHHHHHHH---ccCCEEEEEeC
Confidence 2258999854211 111234444444 47899999874
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0013 Score=57.08 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=44.3
Q ss_pred EeccccccchhhhccCC--CeEEEEeccCCCCchh----HHHHhhccc--ccc-cccCCCCCCCC-Cccchhhccccccc
Q 039518 472 MDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTL----SAIYNRGIL--GAF-HDWCEPFSTYP-RTYDLLHANHLFSH 541 (617)
Q Consensus 472 mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l----~~~~~RGli--g~~-~~~~~~f~typ-rtyDl~H~~~~~s~ 541 (617)
||+|||.|.+..+|.+. ..=+.-+=+.. +-+ +-+.+.+.- -.. .+--+.+...+ .+||+|.+.+++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISP--SMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSS--STTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999766 33222222211 222 112222211 111 11112233333 59999999999986
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceE
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFI 568 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~ 568 (617)
. =.+..+|-.+-++|+|||.+
T Consensus 79 l------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -------S-HHHHHHHHTTT-TSS-EE
T ss_pred h------hhHHHHHHHHHHHcCCCCCC
Confidence 4 35678999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0014 Score=67.81 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=57.4
Q ss_pred CCCCCeeeEEeccccccchhhhc---cCC--CeEEEEeccCCCC-chhHHHHhh----cccc--c-ccccCCCCCCCCCc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVAL---NSL--PVWVMNIVPISMK-NTLSAIYNR----GILG--A-FHDWCEPFSTYPRT 529 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l---~~~--~v~vmnv~p~~~~-~~l~~~~~R----Glig--~-~~~~~~~f~typrt 529 (617)
+..+ .+|||+|||.|..+..+ ... .|..+ |.. +.+..+-++ |+-. . ..|. +.++.-..+
T Consensus 75 ~~~g--~~VLDiG~G~G~~~~~~a~~~g~~~~v~gv-----D~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~ 146 (272)
T PRK11873 75 LKPG--ETVLDLGSGGGFDCFLAARRVGPTGKVIGV-----DMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNS 146 (272)
T ss_pred CCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEE-----CCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCc
Confidence 4555 49999999998754322 222 24333 322 445444443 3211 0 1122 222222379
Q ss_pred cchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 530 YDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 530 yDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
||+|+++.++.+. . ....++-|+=|+|||||.+++.|
T Consensus 147 fD~Vi~~~v~~~~---~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 147 VDVIISNCVINLS---P---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred eeEEEEcCcccCC---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999988777643 1 34578999999999999999964
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0019 Score=64.34 Aligned_cols=122 Identities=11% Similarity=0.119 Sum_probs=68.8
Q ss_pred cccchhhHHHHHHHHHHhccCC--CCCeeeEEeccccccchhhhccCCCeEEEEeccCCCCchhHHHHhh----cc--cc
Q 039518 443 FTTDTSFWQDQVRHYWQLMNVN--ETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNR----GI--LG 514 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~--~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~~~l~~~~~R----Gl--ig 514 (617)
|....+.=..+++...+.+... ...--+|||+|||.|.++..+.+...=++-+-+.. ..+..+-++ |+ +-
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~~ 96 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASE--ENIEVAKLHAKKDPLLKIE 96 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCCCceE
Confidence 4444444344555555544411 11234899999999999888765432232222211 233333222 22 11
Q ss_pred cccccCCCCC-CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 515 AFHDWCEPFS-TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 515 ~~~~~~~~f~-typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
..+.-.+.++ ..|.+||+|.+.+++.+. -....+|-++.++|+|||.+++.+
T Consensus 97 ~~~~d~~~~~~~~~~~~D~i~~~~~l~~~------~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 97 YRCTSVEDLAEKGAKSFDVVTCMEVLEHV------PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EEeCCHHHhhcCCCCCccEEEehhHHHhC------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 1111111111 125789999988877643 245689999999999999999874
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0071 Score=62.26 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=79.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---------CCCcEEEEecCCCC-CCCCC-CeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---------GIGAMISALSTKQL-PYPSS-SFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---------g~~~~~~~~d~~~L-pf~d~-sFDlV 296 (617)
..++||=||.|.|..+..+++.. ....++.+|+++..++.|++. ..++.+...|.... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 34569999999999999998765 223788899999999999874 13467777775221 11223 89999
Q ss_pred Eeccccccccc----chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCc
Q 039518 297 HCSRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCW 356 (617)
Q Consensus 297 ~~s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw 356 (617)
+.-. ...... --..+++.+.+.|+|||.+++-...... .......+.+.+++.+.
T Consensus 155 i~D~-~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~----~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 155 IVDL-TDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL----HPELFKSILKTLRSVFP 213 (246)
T ss_dssp EEES-SSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT----THHHHHHHHHHHHTTSS
T ss_pred EEeC-CCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc----chHHHHHHHHHHHHhCC
Confidence 9632 222211 1357899999999999999987532221 12223445555555554
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0041 Score=64.02 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=75.7
Q ss_pred eeEEeccccccchhhhccCCC-eEEEEeccCCCC-chhHHHHhh---ccc----ccccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMK-NTLSAIYNR---GIL----GAFHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~-~~l~~~~~R---Gli----g~~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|+|+|||.|.++.+|...- -+ .++-.|.. ..+..+-++ +.. =+-.|+-+++. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 479999999999998886431 11 22233333 344443332 221 12234444433 3789999765332
Q ss_pred ccccc-----------CC--------CCC-ChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCce-EEEeeccc
Q 039518 540 SHYKN-----------RG--------EVC-SLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWD-VELHSLEN 598 (617)
Q Consensus 540 s~~~~-----------~~--------~~c-~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~-~~~~~~e~ 598 (617)
..... +. +.. .+..++-++-++|+|||++++--....-..++++.+...+. +....
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~--- 262 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRK--- 262 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEec---
Confidence 21000 00 000 02367778889999999999964444445677777665554 23221
Q ss_pred cCCCceeEEEEEe
Q 039518 599 REKKMESVLICRK 611 (617)
Q Consensus 599 ~~~~~~~~l~~~k 611 (617)
.-.+.+++++++|
T Consensus 263 d~~~~~r~~~~~~ 275 (275)
T PRK09328 263 DLAGRDRVVLGRR 275 (275)
T ss_pred CCCCCceEEEEEC
Confidence 2235688888765
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.003 Score=61.76 Aligned_cols=134 Identities=13% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhhcccccccccCCCC------CCC-CCcc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPF------STY-PRTY 530 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f------~ty-prty 530 (617)
+..+ .+|||+|||.|+++.++..+ .|+..=+.|.. .+ .|+--+.+|..+.. ..+ +.+|
T Consensus 30 i~~g--~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 30 IKPG--DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred cCCC--CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cC-CCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 4444 48999999999997766432 36655444421 00 12222223444321 012 2578
Q ss_pred chhhccccc--c-cccc--CCCCCChhhHHhhhhhcccCCceEEEe-cC----hHHHHHHHhhhhcCCceEEEee-cccc
Q 039518 531 DLLHANHLF--S-HYKN--RGEVCSLEDIMLEMDLIIRPQGFIIIR-DE----KSLITRIRDLAPKFLWDVELHS-LENR 599 (617)
Q Consensus 531 Dl~H~~~~~--s-~~~~--~~~~c~~~~~l~e~dRilRP~G~~i~~-d~----~~~~~~~~~~~~~~~W~~~~~~-~e~~ 599 (617)
|+|=++... + .|.. ....+.++.+|-++-|+|+|||.+++- .. .+++.++++ .+ |++.+.. .-..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~ 175 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASR 175 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCC
Confidence 887654321 1 1100 011123467899999999999999993 12 244444433 22 5555543 2223
Q ss_pred CCCceeEEEEE
Q 039518 600 EKKMESVLICR 610 (617)
Q Consensus 600 ~~~~~~~l~~~ 610 (617)
....|+.+||.
T Consensus 176 ~~~~~~~~~~~ 186 (188)
T TIGR00438 176 KRSAEVYIVAK 186 (188)
T ss_pred cccceEEEEEe
Confidence 34457888875
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0053 Score=61.54 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=67.7
Q ss_pred eeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhhcccccccccCCC---------CCCCCCccchhh
Q 039518 469 RNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEP---------FSTYPRTYDLLH 534 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~---------f~typrtyDl~H 534 (617)
.+|||+|||.|+|...|.+. .|..+-+.|.... .|+.-+-.|.... +. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~--------~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI--------VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC--------CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 47999999999997766432 3444444442111 1222222232221 22 26788888
Q ss_pred ccccccccccCCCC--------CChhhHHhhhhhcccCCceEEEe-----cChHHHHHHHhhhhcCCceEEEeeccccCC
Q 039518 535 ANHLFSHYKNRGEV--------CSLEDIMLEMDLIIRPQGFIIIR-----DEKSLITRIRDLAPKFLWDVELHSLENREK 601 (617)
Q Consensus 535 ~~~~~s~~~~~~~~--------c~~~~~l~e~dRilRP~G~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~ 601 (617)
++...... ... ...+.+|-|+=|+|+|||.+++. +..+.+.++++.-..... ..+...-..
T Consensus 123 S~~~~~~~---g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~ 196 (209)
T PRK11188 123 SDMAPNMS---GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRAR 196 (209)
T ss_pred cCCCCccC---CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCcccccc
Confidence 65432210 111 11256899999999999999994 223444444443333222 223333334
Q ss_pred CceeEEEEE
Q 039518 602 KMESVLICR 610 (617)
Q Consensus 602 ~~~~~l~~~ 610 (617)
..|..+||.
T Consensus 197 s~e~~~~~~ 205 (209)
T PRK11188 197 SREVYIVAT 205 (209)
T ss_pred CceeEEEee
Confidence 557777775
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0012 Score=64.11 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEec---------CCC-CCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALS---------TKQ-LPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d---------~~~-Lpf~d~sFDlV~ 297 (617)
.+.+|||+||++|.|+..+++++.....+.++|+.+.. ....+....+| +.. ++-..+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 45789999999999999999987334466667766541 00111111111 111 111226899999
Q ss_pred ecccccccc----cch-------HHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWH----AND-------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~----~d~-------~~~L~el~RvLrPGG~Liis~ 330 (617)
|-. ..... .+. ...+.-+...|+|||.+++-.
T Consensus 97 ~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 97 SDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 753 11111 111 224555667899999998865
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=59.82 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=67.6
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecC-CCCC-----CCCCCeeEEE
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALST-KQLP-----YPSSSFEMVH 297 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~-~~Lp-----f~d~sFDlV~ 297 (617)
++.||||.=||.-+..++..-...-.+..+|++++..+.+.+. |+ .+.+.++.+ +.|+ ...++||+++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 4599999888876666655422223566778888888777543 43 355666543 2222 3568999998
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+-+|-.+-..+..++.++||+||.+++-.
T Consensus 155 ----vDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 155 ----VDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred ----EccchHHHHHHHHHHHhhcccccEEEEec
Confidence 45666666789999999999999999853
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0016 Score=65.60 Aligned_cols=95 Identities=12% Similarity=0.258 Sum_probs=61.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccccc--cccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILGAF--HDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~--~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
..|||+|||.|.++..|.+... +++=.|.. +.+..+-++ |+-..+ .++.+-....+-+||+|.+..++.+
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 3599999999999988876643 33333433 444444433 331112 2222211112368999999888775
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. . ....+|-++.|+|+|||.+++..
T Consensus 127 ~---~---~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 V---P---DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred c---C---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 2 45678999999999999999974
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0034 Score=66.00 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCC-CC--CCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQ-LP--YPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~-Lp--f~d~sFDlV~~ 298 (617)
+++|||+=|=||.|+.+.+..|.. .++.+|.|..+++.|+++ ++ .+.+...|+.+ +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 457999999999999998877753 677789999999999886 43 35666666422 11 02468999997
Q ss_pred cc-----cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SR-----CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~-----~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-- .......+...++..+.++|+|||.++.+..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 31 1111123456789999999999999988764
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0057 Score=63.33 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=56.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCC-CeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSS-SFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~-sFDlV~~s 299 (617)
.++..|||||+|.|.++..|++++.. +++++++..+++..+++. .+..+..+|+-..++++- .++.|+++
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 34567999999999999999999764 566788999988887773 457888889888887654 58888876
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0026 Score=63.72 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccCC--C---eEEEEeccCCCCchhHHHHhhcc---cccccccCCCCCC
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL--P---VWVMNIVPISMKNTLSAIYNRGI---LGAFHDWCEPFST 525 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~---v~vmnv~p~~~~~~l~~~~~RGl---ig~~~~~~~~f~t 525 (617)
++...+.+.+..+ ..|||+|||.|.+++.|.+. + |+.+-+.|.-....-..+-+.|+ .=+..|..+.++.
T Consensus 66 ~~~~~~~l~~~~~--~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 66 VAMMTELLELKPG--MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHhCCCCc--CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3444455556655 47999999999999988643 2 44443332211111112223343 1122344443333
Q ss_pred CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 526 YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
...||+|+++.... .+.-++-+.|+|||.+|+-
T Consensus 144 -~~~fD~Ii~~~~~~------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 -LAPYDRIYVTAAGP------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred -cCCCCEEEEcCCcc------------cccHHHHHhcCcCcEEEEE
Confidence 25899999655433 2344566889999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0031 Score=63.85 Aligned_cols=120 Identities=17% Similarity=0.279 Sum_probs=70.8
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHH----Hhhccc--cc-ccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAI----YNRGIL--GA-FHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~----~~RGli--g~-~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|+|+|||.|.|+.++... |-. +++-.|.. ..+..+ -..|+- -+ ..|+-+.++ +..||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 47999999999999988764 211 22223322 333222 223441 12 223333333 3789999876544
Q ss_pred ccccc---CCCCCC-----------------hhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEE
Q 039518 540 SHYKN---RGEVCS-----------------LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVE 592 (617)
Q Consensus 540 s~~~~---~~~~c~-----------------~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~ 592 (617)
..... ...... ...++-++-|+|+|||.+++........+++++++...++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 42100 000000 135677899999999999998666666778888877777643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=62.59 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCcHHHHHhccC----CCcEEEeeecCCcHHHHHHHHHhCC----C-cEE--EEecCCC----CCC--CC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPL----DIQTMSFAPKDGHENQIQFALERGI----G-AMI--SALSTKQ----LPY--PS 290 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~----gv~~v~v~~iDis~~~lq~A~erg~----~-~~~--~~~d~~~----Lpf--~d 290 (617)
++..++|+|||.|.=+..|++. +. .+.+.|+|+|.++++.+.++-. + +.+ ..++..+ ++- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 3446999999999766655442 22 2478899999999998877532 2 333 3444322 321 12
Q ss_pred CCeeEEEecc-cccccc-cchHHHHHHHHH-hccCCeEEEEEe
Q 039518 291 SSFEMVHCSR-CRVDWH-ANDGILLKEVDR-VLRPNGYFVYSA 330 (617)
Q Consensus 291 ~sFDlV~~s~-~l~h~~-~d~~~~L~el~R-vLrPGG~Liis~ 330 (617)
....+++.-. .+.++. ++...+|+++.+ .|+|||.|+|..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 3456776543 333433 223468999999 999999999975
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.024 Score=57.22 Aligned_cols=121 Identities=15% Similarity=0.079 Sum_probs=78.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH----HhCCC-cEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL----ERGIG-AMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~----erg~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.+++|||+|.|.-+..|+=..... .++-+|....-+.+-+ +-+.+ +.+..+.++.+.-...-||+|+|- ++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~-~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsR-Av- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDL-KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSR-AV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCC-cEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEee-hc-
Confidence 5689999999998888876332222 3666676655554433 33665 788888787775321119999864 33
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.+...++.-+..+|++||.++..- .......+.+.+......++.+...
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k------~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYK------GLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhh------HHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 256678888899999999876421 0111122556777777788877763
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0031 Score=63.21 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=55.4
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHh----hcccccccccCCCCCC
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYN----RGILGAFHDWCEPFST 525 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~----RGlig~~~~~~~~f~t 525 (617)
......+.+..+ .+|||+|||+|.+++.|... .|..+-+.| +-+..+-+ -|+-.+---....+..
T Consensus 66 ~~~~~~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 66 AIMCELLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHcCCCCc--CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 333444456665 58999999999999776432 344443322 22222222 2331111111222333
Q ss_pred CC--CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 526 YP--RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 526 yp--rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+| ..||.|++...+. .+.-++-+.|+|||.+++-
T Consensus 140 ~~~~~~fD~I~~~~~~~------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGP------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcc------------cchHHHHHhhCCCcEEEEE
Confidence 33 6899998655443 2344566689999999884
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.027 Score=60.68 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=88.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
+|.+|||+=+|.|.|+..++..+.. .+.++|+++.+++..+++ ++. +....+|...++..-+.||-|+...
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~- 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL- 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-
Confidence 3567999999999999999998764 377889999999888775 332 5567788877765558899999653
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKL 358 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~ 358 (617)
+.+-..++..+.+.|++||.+.+-.........+ .....+...+...|.+.
T Consensus 265 ----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 265 ----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--RPEKRIKSAARKGGYKV 315 (341)
T ss_pred ----CCcchhhHHHHHHHhhcCcEEEEEeccchhhccc--chHHHHHHHHhhccCcc
Confidence 3345678899999999999998865322211111 13456788888887643
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0039 Score=58.98 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=54.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.|++++|+|||.|-+.....-.+. -.+.+.|+.+.+++.+..+ .+++.+.++++.++.+..+.||.++.+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 456799999999987744433333 3677889999999988765 4556778888888877788999999764
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.013 Score=60.80 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=53.3
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh--CCC----cEEEEecCCCCCCCCCCeeEEEe
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER--GIG----AMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er--g~~----~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
.+.++..|||||.|||.++..|++.+..++ ++++++.|+....+| |.+ ..+..+|.-..++| .||.+++
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVv---A~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVs 129 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVV---AVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVS 129 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEE---EEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeec
Confidence 456777899999999999999999987554 457888998888777 333 45666776555443 5999997
Q ss_pred c
Q 039518 299 S 299 (617)
Q Consensus 299 s 299 (617)
+
T Consensus 130 N 130 (315)
T KOG0820|consen 130 N 130 (315)
T ss_pred c
Confidence 5
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0063 Score=66.39 Aligned_cols=94 Identities=6% Similarity=0.111 Sum_probs=71.2
Q ss_pred CeEEEECCCCcHHHHHhccC--CCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC-CCCCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPL--DIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP-YPSSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~--gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp-f~d~sFDlV~~s~~ 301 (617)
.+|||+.||+|..+..++.+ ++. .+..+|+++.+++.++++ +. ++.+...|+..+- ...+.||+|..-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD-- 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID-- 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC--
Confidence 46999999999999999987 443 678899999999988765 33 2456666654332 123579999843
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++. .+..++..+.+.+++||.+.++.
T Consensus 122 --PfG-s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 --PFG-TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CCC-CcHHHHHHHHHhcccCCEEEEEe
Confidence 332 56789999999999999999984
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0035 Score=65.08 Aligned_cols=133 Identities=13% Similarity=0.215 Sum_probs=81.0
Q ss_pred cCccccccchhhHHHHHHHHHHhc-c-CCCCCeeeEEeccccccc----hhhhccCC----CeEEEEeccCCCC-chhHH
Q 039518 438 ITQEEFTTDTSFWQDQVRHYWQLM-N-VNETEIRNAMDMNAYCGG----FAVALNSL----PVWVMNIVPISMK-NTLSA 506 (617)
Q Consensus 438 ~~~~~f~~d~~~w~~~v~~y~~~~-~-~~~~~~Rn~mDm~~~~g~----faa~l~~~----~v~vmnv~p~~~~-~~l~~ 506 (617)
++...|-.|...|..-.+.....+ . ...+.--.|+|+|||.|- .|-.|.+. +-|...|.-+|-. .-|..
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 455678888899988776655433 2 222333579999999994 55545331 1234456656655 44433
Q ss_pred HHhhccc-----------------------------------ccccccCCCCCCCCCccchhhccccccccccCCCCCCh
Q 039518 507 IYNRGIL-----------------------------------GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSL 551 (617)
Q Consensus 507 ~~~RGli-----------------------------------g~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~ 551 (617)
+- +|.- =..||-.+.-+ -+..||+|.|..+|..+ +.=..
T Consensus 148 Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf----~~~~~ 221 (264)
T smart00138 148 AR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYF----DEPTQ 221 (264)
T ss_pred HH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhC----CHHHH
Confidence 32 2210 01234443221 13799999988887654 11123
Q ss_pred hhHHhhhhhcccCCceEEEecChHH
Q 039518 552 EDIMLEMDLIIRPQGFIIIRDEKSL 576 (617)
Q Consensus 552 ~~~l~e~dRilRP~G~~i~~d~~~~ 576 (617)
..++-++-|+|+|||++++-....+
T Consensus 222 ~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 222 RKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHHHHHhCCCeEEEEECcccC
Confidence 4699999999999999999866543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0031 Score=62.23 Aligned_cols=120 Identities=11% Similarity=0.132 Sum_probs=67.2
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHH----HHhhcccccccccCCCC--C--CCC-Cccchhhccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSA----IYNRGILGAFHDWCEPF--S--TYP-RTYDLLHANH 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~----~~~RGlig~~~~~~~~f--~--typ-rtyDl~H~~~ 537 (617)
+.|||+|||.|.|+.+|..+ ..-+..|-+.. .-+.. +-+.|+-.+-.-.+... + .+| .++|.|+.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~--~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHT--PIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 57999999999999888643 22222222222 22222 22334421111112211 1 144 4899887542
Q ss_pred cccccc---cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhh-cCCceE
Q 039518 538 LFSHYK---NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAP-KFLWDV 591 (617)
Q Consensus 538 ~~s~~~---~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~-~~~W~~ 591 (617)
-. .|. ..+.|...+.+|-|+=|+|+|||.+++. |..+..+.+.+.+. .-+|+.
T Consensus 96 pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 11 121 1235666778999999999999999987 55555555555443 333554
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.02 Score=57.90 Aligned_cols=143 Identities=11% Similarity=0.104 Sum_probs=82.7
Q ss_pred HHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcH----HHHHHHHHhCCCcEEEEecCCCCC
Q 039518 213 LGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHE----NQIQFALERGIGAMISALSTKQLP 287 (617)
Q Consensus 213 L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~----~~lq~A~erg~~~~~~~~d~~~Lp 287 (617)
|...+-..-..+.+.+|.+||-+|+.+|....++++- +... .+.+++.++ ..+..|++|. ++.-...|+. .|
T Consensus 58 LaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G-~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr-~P 134 (229)
T PF01269_consen 58 LAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDG-VVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDAR-HP 134 (229)
T ss_dssp HHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHST-TEEEEES-TT-SG
T ss_pred HHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCC-cEEEEEecchhHHHHHHHhccCC-ceeeeeccCC-Ch
Confidence 4444433334577889999999999999888887764 2222 456667777 5566666664 3444455543 22
Q ss_pred ----CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhHHHHHHHHHHcCceEEEE
Q 039518 288 ----YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 288 ----f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.--+.+|+|++- +. -++....++.++...||+||.++++........ .+....+..-.+.++..+|+.+..
T Consensus 135 ~~Y~~lv~~VDvI~~D-Va--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 135 EKYRMLVEMVDVIFQD-VA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ 210 (229)
T ss_dssp GGGTTTS--EEEEEEE--S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhhcccccccEEEec-CC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE
Confidence 112479999964 22 233456788899999999999999863211111 122233555555566678888763
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0049 Score=61.40 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=58.2
Q ss_pred HHHHhccCCCCCeeeEEeccccccchhhhccC-----CCeEEEEeccCCCCchhHHHHhhcccc---cc-cccCCCCCCC
Q 039518 456 HYWQLMNVNETEIRNAMDMNAYCGGFAVALNS-----LPVWVMNIVPISMKNTLSAIYNRGILG---AF-HDWCEPFSTY 526 (617)
Q Consensus 456 ~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~-----~~v~vmnv~p~~~~~~l~~~~~RGlig---~~-~~~~~~f~ty 526 (617)
...+.+.+..+ ..|||+|||.|.+++.|.. ..|..+-+.|.-....-+-+...|+-. ++ .|-.+.++.
T Consensus 63 ~~~~~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~- 139 (205)
T PRK13944 63 MMCELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK- 139 (205)
T ss_pred HHHHhcCCCCC--CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-
Confidence 34444555555 4699999999999877643 234444433322111111223345422 22 244443332
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
..+||.|.++..+.. +.=|+-|+|+|||.+++-
T Consensus 140 ~~~fD~Ii~~~~~~~------------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAAST------------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCcch------------hhHHHHHhcCcCcEEEEE
Confidence 368999997665542 223677999999999985
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0033 Score=59.16 Aligned_cols=97 Identities=14% Similarity=0.306 Sum_probs=63.0
Q ss_pred eeEEeccccccchhhhccC---CCeEEEEeccCCCCchhHHHHh----hccc--c-cccccCCCCCC-CCCccchhhccc
Q 039518 469 RNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMKNTLSAIYN----RGIL--G-AFHDWCEPFST-YPRTYDLLHANH 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~~~l~~~~~----RGli--g-~~~~~~~~f~t-yprtyDl~H~~~ 537 (617)
-+|||+|||.|-++=.|.+ .+.=++.|--.. ..++.+-+ .|+- = ...|+-+ ++. |+..||+|.+.+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 4799999999999888872 234444443322 34444433 3442 1 1233333 332 458999999998
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
++... .....+|-+|=|.|+|+|.+++.+..
T Consensus 82 ~l~~~------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHF------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGT------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhc------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 88533 34457899999999999999998765
|
... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0033 Score=52.41 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=56.2
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHH---hhcc---cccc-cccCCCCCCCCCccchhhccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIY---NRGI---LGAF-HDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~---~RGl---ig~~-~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
+++|+|||.|++...+...+.. ++.-.|.. +.+..+- +.+. +-.+ .|+.+.-..-+..||++.++..+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGA--RVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCC--EEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999888763221 22222322 2222222 1221 1112 1222221112478999998888873
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+ .=....++-.+.+.|||||++++.
T Consensus 79 ~-----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 1 113457888889999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.018 Score=64.02 Aligned_cols=129 Identities=22% Similarity=0.197 Sum_probs=82.8
Q ss_pred eecCCCCCcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh
Q 039518 193 WWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER 272 (617)
Q Consensus 193 ~~Fpgggt~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er 272 (617)
..|+-..+.|-+......+.+.+..-. .+...++.++||+=||.|.|+..|+++.. .+.++|+++++++.|+++
T Consensus 261 ~~~~~~~~sF~Q~N~~~~ekl~~~a~~---~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~N 334 (432)
T COG2265 261 VSFQISPRSFFQVNPAVAEKLYETALE---WLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQEN 334 (432)
T ss_pred eEEEeCCCCceecCHHHHHHHHHHHHH---HHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHH
Confidence 333334446766665555544444322 22234667899999999999999997654 667779999999888765
Q ss_pred ----CC-CcEEEEecCCCCCCC---CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 273 ----GI-GAMISALSTKQLPYP---SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 273 ----g~-~~~~~~~d~~~Lpf~---d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++ ++.+..++++++... ...||.|+.---.-. -...+++.+. -++|-..+++|..
T Consensus 335 A~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G---~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 335 AAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG---ADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred HHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCC---CCHHHHHHHH-hcCCCcEEEEeCC
Confidence 44 478888887776532 357899984321100 1123444444 4578889999874
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0021 Score=63.83 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=65.1
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chh-HHHHhhcccccccccCCCCCC--CCCccchhhccccccccccC
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTL-SAIYNRGILGAFHDWCEPFST--YPRTYDLLHANHLFSHYKNR 545 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l-~~~~~RGlig~~~~~~~~f~t--yprtyDl~H~~~~~s~~~~~ 545 (617)
.|||+|||-|--|-+|.++..=|..|=-.... +.+ .++-++||- ++.++.-+.+ +|..||+|-+..+|- |
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~-f--- 106 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFM-F--- 106 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGG-G---
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEec-c---
Confidence 78999999999999999888766655444443 333 344556764 3333333332 568999998876775 3
Q ss_pred CCCCChhhHHhhhhhcccCCceEEE
Q 039518 546 GEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 546 ~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
.++=.+..|+--|-.-++||||+++
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 5566778899999999999999988
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=58.19 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=62.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH----HhCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL----ERGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~----erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
-.|++|||+|+|+|..+..-+..|.. .+...|+.+...+... .+|+.+.+...|.-. .+..||+|+.+.++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeecee
Confidence 45788999999999988877776654 4455566666654433 335555555544322 56789999998766
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.... .-..++. ..+.|+..|.-++..
T Consensus 153 y~~~-~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 153 YNHT-EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred cCch-HHHHHHH-HHHHHHhCCCEEEEe
Confidence 5433 3455666 555555555555544
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0016 Score=75.00 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=59.7
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----cc-cccccccCCCCCC-C-CCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GI-LGAFHDWCEPFST-Y-PRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Gl-ig~~~~~~~~f~t-y-prtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++.+|... |- .+|+-.|-. +.+..+-++ |. +-+++.=+..++. + |.+||+|.++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 48999999999998777532 11 122333433 344444333 21 1111111222332 3 4899999877655
Q ss_pred cccc---c-CC---CCCChhhHHhhhhhcccCCceEEEecC
Q 039518 540 SHYK---N-RG---EVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 540 s~~~---~-~~---~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
-.+- . .. +.-.+..+|-|+-|+|+|||.+++.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4220 0 01 112456889999999999999999873
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.022 Score=58.02 Aligned_cols=127 Identities=15% Similarity=0.220 Sum_probs=87.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEE-ecCCCCC---CCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISA-LSTKQLP---YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~-~d~~~Lp---f~d~sFDlV~~s~~l~ 303 (617)
.+..+||+|+.||.|+..++++|.. .+.++|..-.++..-.+....+.... .++..+. +. +..|+|+|--.+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF- 154 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF- 154 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh-
Confidence 4556999999999999999999876 67888999888877776665544332 2333332 22 367899975433
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCC------------CC-CChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRK------------DK-DYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~------------~~-~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. .....|-.+..+|+|+|.++.-.-|-..- ++ .+...-..+.+.+...||.....
T Consensus 155 --I-SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 155 --I-SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred --h-hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 3 46689999999999999888764332111 11 12223445888888999998763
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.024 Score=56.03 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=67.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCC-CCCCC--CeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQL-PYPSS--SFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~L-pf~d~--sFDlV~~ 298 (617)
.|.++||+=+|+|.++...++||.. .++.+|.+...++..+++ + ..+.+...|+... +-... +||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 4567999999999999999999876 456678888888888776 3 3455555565422 21222 4999996
Q ss_pred cccccccccchHHHHHH--HHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKE--VDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~e--l~RvLrPGG~Liis~p 331 (617)
---...-.-+....+.. -...|+|+|.+++...
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 43211000112333333 5677999999999764
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0094 Score=60.01 Aligned_cols=126 Identities=16% Similarity=0.227 Sum_probs=67.8
Q ss_pred cCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc--cccccccCCCCCCCCCccchhh
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI--LGAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~~~~f~typrtyDl~H 534 (617)
++..+ -.|||+|||.|.++..+...+.- +|+-.|-. ..+..+-+ .|+ --+-.|+.+.++ +..||+|.
T Consensus 33 ~~~~~--~~vLDlGcG~G~~~~~la~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi 106 (223)
T PRK14967 33 GLGPG--RRVLDLCTGSGALAVAAAAAGAG--SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVV 106 (223)
T ss_pred ccCCC--CeEEEecCCHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEE
Confidence 34444 47999999999998877654320 22222322 33333222 243 112235555443 26899999
Q ss_pred cccccccc--------------ccCC-CCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCCceEEE
Q 039518 535 ANHLFSHY--------------KNRG-EVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 535 ~~~~~s~~--------------~~~~-~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 593 (617)
++--|..- .... ....++.++-++-|+|+|||.+++- .......++.+++++-.|+...
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 87433210 0000 0112456778899999999999983 2211233444445544555444
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0034 Score=63.95 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=76.3
Q ss_pred CCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCC--------CCCCccchhhcc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFS--------TYPRTYDLLHAN 536 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~--------typrtyDl~H~~ 536 (617)
..-|.+.|+|||.| +||..+..= -=+|+-+|-. .+|+++ .-+.--+||+=--.++ .=+.+-|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 34569999999999 777664211 2245556666 788744 4445555554444443 236899999988
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCc----eEEEecChHHHHHHHhhhhcCCce
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQG----FIIIRDEKSLITRIRDLAPKFLWD 590 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G----~~i~~d~~~~~~~~~~~~~~~~W~ 590 (617)
.++- | |+++..+-|+-|||||.| .|..+|+.-++-++-++..+++|+
T Consensus 108 qa~H-W------Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAVH-W------FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhHH-h------hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 7764 5 888999999999999999 223355555555666666666664
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0086 Score=61.77 Aligned_cols=129 Identities=12% Similarity=0.092 Sum_probs=76.5
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hcccccccccCCCCCC-CCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGILGAFHDWCEPFST-YPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGlig~~~~~~~~f~t-yprtyDl~H~~~~~s~ 541 (617)
.+|+|+|||.|.++-+|... +-. +|+-.|.. ..+..+-+ .|+--+-.|+.+.++. ....||+|=++--+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~--~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGI--ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 47999999999998877532 211 22223333 34433322 2321133455444432 2346888876543321
Q ss_pred cc------c----CCCCCC----------hhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEeecccc
Q 039518 542 YK------N----RGEVCS----------LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENR 599 (617)
Q Consensus 542 ~~------~----~~~~c~----------~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 599 (617)
.. . ...+.. +..++-...++|+|||.+++--..+...++..+++...|+..+..+++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 00 0 000111 2377788899999999999975556677888888888898888887664
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.032 Score=56.11 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=75.3
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC----CcEEEEecC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI----GAMISALST 283 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~----~~~~~~~d~ 283 (617)
.|.+.+++.+.. .|+|||.||-|-|.....+.++.+.-- .-++.++..++.-++.|- ++.+..+-=
T Consensus 89 piMha~A~ai~t--------kggrvLnVGFGMgIidT~iQe~~p~~H--~IiE~hp~V~krmr~~gw~ek~nViil~g~W 158 (271)
T KOG1709|consen 89 PIMHALAEAIST--------KGGRVLNVGFGMGIIDTFIQEAPPDEH--WIIEAHPDVLKRMRDWGWREKENVIILEGRW 158 (271)
T ss_pred HHHHHHHHHHhh--------CCceEEEeccchHHHHHHHhhcCCcce--EEEecCHHHHHHHHhcccccccceEEEecch
Confidence 455556655543 455699999999999888877755422 235778888888887653 233333321
Q ss_pred CC-CC-CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEE
Q 039518 284 KQ-LP-YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 284 ~~-Lp-f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
++ ++ ++++.||-|+-- ..-...+|...+.+-+.|+|||+|.+-.-
T Consensus 159 eDvl~~L~d~~FDGI~yD-Ty~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 159 EDVLNTLPDKHFDGIYYD-TYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred HhhhccccccCcceeEee-chhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 21 22 568899999854 33233457788899999999999999874
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.007 Score=66.20 Aligned_cols=119 Identities=14% Similarity=0.139 Sum_probs=70.6
Q ss_pred eeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhhcccc---cccccC---CCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNRGILG---AFHDWC---EPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~RGlig---~~~~~~---~~f~typrtyDl~H~~~~ 538 (617)
..++|+|||.|.|..+|... .++-+=+-+......+.-+.++||-- +..|-- +.|+ +.++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln-- 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH-- 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe--
Confidence 47999999999999988643 34444333222222334455666521 223332 2343 3899999854
Q ss_pred cc-ccccCCCC-CChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcC-CceE
Q 039518 539 FS-HYKNRGEV-CSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKF-LWDV 591 (617)
Q Consensus 539 ~s-~~~~~~~~-c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~-~W~~ 591 (617)
|. -|....+| =-....|-|+=|+|+|||.+.++ |..+..+.+.+..... +++.
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 32 23211222 12258999999999999999996 6666666655554333 4544
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.02 Score=67.52 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=69.6
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccc-c----cccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGIL-G----AFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGli-g----~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
++|||++||+|+|+-++.....- .|+-+|.. .-+..+-+ -|+- . +-.|..+.+....++||+|=++-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 68999999999999988766432 23333443 33332222 2331 0 112322222223578999865521
Q ss_pred -ccccccCCCCC--------ChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEee
Q 039518 539 -FSHYKNRGEVC--------SLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 539 -~s~~~~~~~~c--------~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~ 595 (617)
|+. .... ....++-..=|+|+|||.+++.....-+....+.+..-.+++++..
T Consensus 618 ~f~~----~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSN----SKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCC----CCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 110 0000 1346777778999999999997555545555666666677777664
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0061 Score=60.84 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=55.7
Q ss_pred eeEEeccccccchhhhccC-----CCeEEEEeccCCCCchhHHHHhh----cc---cccc-cccCCCCCCCCCccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNS-----LPVWVMNIVPISMKNTLSAIYNR----GI---LGAF-HDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~-----~~v~vmnv~p~~~~~~l~~~~~R----Gl---ig~~-~~~~~~f~typrtyDl~H~ 535 (617)
..|||+|||.|.++..+.. ..|..+-+.| +.+..+-++ ++ +-+. .|..+ ++.=+.+||+|.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~----~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~ 127 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE----GMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTI 127 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH----HHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEE
Confidence 4699999999999877643 2333332221 333333222 11 1111 12211 2211368999987
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
..++.. ......+|-++-++|+|||.+++.+
T Consensus 128 ~~~l~~------~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 128 AFGLRN------VPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred eccccc------CCCHHHHHHHHHHhccCCcEEEEEE
Confidence 665543 3457788999999999999999853
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.011 Score=59.83 Aligned_cols=101 Identities=12% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhhcc-cc--cccccCCCCCCCCCccchhhcccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNRGI-LG--AFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~RGl-ig--~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
..-.+|||+|||.|.++..|.+. .-...+|+-.|-. +.+..+.++.- .+ ....=++.++.-+.+||+|-++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 44568999999999988777531 0111245555655 66666665521 11 111112334443589999999988
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|.+. .+. .+..+|-||-|++| |.+++.|
T Consensus 139 lhh~---~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHL---DDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecC---ChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 8764 221 24568999999999 5666654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.015 Score=61.47 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=79.5
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeeEEeccccccch--hhhccC-CCeEEEEeccCCCCchhHHHHhhcccccccc-cC
Q 039518 445 TDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGF--AVALNS-LPVWVMNIVPISMKNTLSAIYNRGILGAFHD-WC 520 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~f--aa~l~~-~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~-~~ 520 (617)
+-|+.=-+.+.+| ...+ .+|||+|||+|=. ||+++. ..|...-+=|.--.++..-+-.-|+-.-+.- ..
T Consensus 146 ~TT~lcl~~l~~~-----~~~g--~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~ 218 (295)
T PF06325_consen 146 PTTRLCLELLEKY-----VKPG--KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS 218 (295)
T ss_dssp HHHHHHHHHHHHH-----SSTT--SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT
T ss_pred HHHHHHHHHHHHh-----ccCC--CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe
Confidence 3344444445555 2334 5999999999954 555543 4576666555443344444555554332211 12
Q ss_pred CCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-HHHHHHHhhhhcCCceEEEeecccc
Q 039518 521 EPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-SLITRIRDLAPKFLWDVELHSLENR 599 (617)
Q Consensus 521 ~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e~~ 599 (617)
+.+.. ..||+|=|+=+... +..++=++.+.|+|||++|++--. +..+.|++..+. -|++.....+
T Consensus 219 ~~~~~--~~~dlvvANI~~~v---------L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~-- 284 (295)
T PF06325_consen 219 EDLVE--GKFDLVVANILADV---------LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE-- 284 (295)
T ss_dssp SCTCC--S-EEEEEEES-HHH---------HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE--
T ss_pred ccccc--ccCCEEEECCCHHH---------HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE--
Confidence 22333 89999987766652 224566789999999999998321 223445554455 6766554432
Q ss_pred CCCceeEEEEEec
Q 039518 600 EKKMESVLICRKK 612 (617)
Q Consensus 600 ~~~~~~~l~~~k~ 612 (617)
+.=-.|+++|+
T Consensus 285 --~~W~~l~~~Kk 295 (295)
T PF06325_consen 285 --GEWVALVFKKK 295 (295)
T ss_dssp --TTEEEEEEEE-
T ss_pred --CCEEEEEEEeC
Confidence 22456777775
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.011 Score=62.58 Aligned_cols=47 Identities=17% Similarity=-0.046 Sum_probs=38.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG 273 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg 273 (617)
.++..+||.+||.|..+..+++.......+.++|.++.+++.|+++-
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 45567999999999999999987532347889999999999998763
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.019 Score=51.06 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=54.0
Q ss_pred cCCCCCeeeEEeccccccchhhhccCC-C-eEEEEeccCCCCchhHHH----Hhhccccc--c-cc--cCCCCCCCCCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSL-P-VWVMNIVPISMKNTLSAI----YNRGILGA--F-HD--WCEPFSTYPRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~-~-v~vmnv~p~~~~~~l~~~----~~RGlig~--~-~~--~~~~f~typrty 530 (617)
.+..+ .+|+|+|||.|.++..+.+. | .-|+.+-+.. ..+..+ -+.|+-.+ . .| |+.. .-+.+|
T Consensus 16 ~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 89 (124)
T TIGR02469 16 RLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIERNP--EALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEP 89 (124)
T ss_pred CCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCH--HHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCC
Confidence 34444 48999999999999988654 2 2333333222 222222 22233111 1 11 2222 123578
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.|=...... .+..++-++-|.|+|||++++.
T Consensus 90 D~v~~~~~~~---------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG---------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch---------hHHHHHHHHHHHcCCCCEEEEE
Confidence 8874332222 2357899999999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.016 Score=56.22 Aligned_cols=143 Identities=18% Similarity=0.260 Sum_probs=71.4
Q ss_pred CCCCCeeeEEeccccccchhhhccCCC-----eEEEEeccCCCCchhHHHHhhccc---ccccccCCCCCCCCCccchhh
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLP-----VWVMNIVPISMKNTLSAIYNRGIL---GAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~-----v~vmnv~p~~~~~~l~~~~~RGli---g~~~~~~~~f~typrtyDl~H 534 (617)
++.+.-.+|||.||+-|||..++..+. |+-+.+.|.+...-+..+ +|=+ .+...-.+.++.=.+.+|+|-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 566678999999999999999998776 455666665322111111 3311 111111222221126899999
Q ss_pred ccccccccccCCCCCC--hhhHHhh---hhhcccCCceEEEe-----cChHHHHHHHhhhhcCCceEEEe-eccccCCCc
Q 039518 535 ANHLFSHYKNRGEVCS--LEDIMLE---MDLIIRPQGFIIIR-----DEKSLITRIRDLAPKFLWDVELH-SLENREKKM 603 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~--~~~~l~e---~dRilRP~G~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~ 603 (617)
+|..+..-........ +..++-+ +-..|+|||.+|+. +..+++..++..-+.. .+. -.-.++...
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v----~~~Kp~~sr~~s~ 172 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV----KIVKPPSSRSESS 172 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE----EEEE-TTSBTTCB
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE----EEEECcCCCCCcc
Confidence 8885541100000001 1122222 23559999988874 2235555555543333 333 223455667
Q ss_pred eeEEEEEe
Q 039518 604 ESVLICRK 611 (617)
Q Consensus 604 ~~~l~~~k 611 (617)
|.-+||.+
T Consensus 173 E~Ylv~~~ 180 (181)
T PF01728_consen 173 EEYLVCRG 180 (181)
T ss_dssp EEEEESEE
T ss_pred EEEEEEcC
Confidence 88888764
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.075 Score=52.28 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=62.2
Q ss_pred HHHHHH-HHHhccCCCCCeeeEEeccccccchhhhccC--CCeEEEEeccCCCCchhHHHH----hhccc--cccc-ccC
Q 039518 451 QDQVRH-YWQLMNVNETEIRNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMKNTLSAIY----NRGIL--GAFH-DWC 520 (617)
Q Consensus 451 ~~~v~~-y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~~~l~~~~----~RGli--g~~~-~~~ 520 (617)
+..+.. ..+.+.+..+ .+|+|+|||.|.++..+.. ...-|.-|-+.. ..+..+- +.|+- -+.+ |--
T Consensus 25 ~~~v~~~l~~~l~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~--~~~~~a~~n~~~~~~~~v~~~~~d~~ 100 (196)
T PRK07402 25 KREVRLLLISQLRLEPD--SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDE--EVVNLIRRNCDRFGVKNVEVIEGSAP 100 (196)
T ss_pred HHHHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCeEEEECchH
Confidence 444443 3444445554 4799999999999876642 222333232221 2222222 22431 1111 111
Q ss_pred CCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcC
Q 039518 521 EPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKF 587 (617)
Q Consensus 521 ~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~ 587 (617)
+.+...+-.+|.++.+ ..-.+..++-++-|+|+|||.+++-.. .+.+.++.+..+.+
T Consensus 101 ~~~~~~~~~~d~v~~~----------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 101 ECLAQLAPAPDRVCIE----------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred HHHhhCCCCCCEEEEE----------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 1111111123444311 123567899999999999999998743 33444555555444
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.013 Score=61.41 Aligned_cols=101 Identities=17% Similarity=0.311 Sum_probs=74.6
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhH----HHHhhccc----ccccccCCCCCCCCCc
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLS----AIYNRGIL----GAFHDWCEPFSTYPRT 529 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~----~~~~RGli----g~~~~~~~~f~typrt 529 (617)
+.|+|++| -+|||+|||-|+++-++... +|=|+.|--.. +|+. -|-++||- -.++||...=. .
T Consensus 66 ~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e----~ 137 (283)
T COG2230 66 EKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYRDFEE----P 137 (283)
T ss_pred HhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEecccccccc----c
Confidence 44568888 57999999999999888655 67666553333 4443 36778986 45777765444 3
Q ss_pred cchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 530 YDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 530 yDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
||=|=+-+.|.+. ..-+..+++-=+.++|+|||-+++.
T Consensus 138 fDrIvSvgmfEhv----g~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 138 FDRIVSVGMFEHV----GKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cceeeehhhHHHh----CcccHHHHHHHHHhhcCCCceEEEE
Confidence 8888888888864 3345678999999999999999885
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.0074 Score=65.04 Aligned_cols=117 Identities=8% Similarity=-0.042 Sum_probs=69.2
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcc---cccccccCCCCCCCCCccchhhccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGI---LGAFHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGl---ig~~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
..|||+|||.|.++..+.+. +- -+|.=.|.. +.+..+-++.- +-+.+.=-+.++.-+.+||+|-+.+.+..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~- 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW- 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-
Confidence 47999999999987776432 11 122223333 55555555421 111111112223223799999887777654
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEecCh-----------------HHHHHHHhhhhcCCceEEE
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-----------------SLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-----------------~~~~~~~~~~~~~~W~~~~ 593 (617)
. +.+.+|-|+-|+|+|||.+++.+.. ...+++.+++++.-++...
T Consensus 192 --~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 192 --P---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred --C---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 2 2357899999999999999875321 0235566677776776433
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.018 Score=57.30 Aligned_cols=96 Identities=14% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----ccc--ccccccCCCCCCCC--
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GIL--GAFHDWCEPFSTYP-- 527 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gli--g~~~~~~~~f~typ-- 527 (617)
....+.+..+ .+|||+|||.|.+++.|....--|..| |.. +-+..+-++ |+- -+.+ ...+.++|
T Consensus 70 l~~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~~v~~v---d~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~ 142 (212)
T PRK00312 70 MTELLELKPG--DRVLEIGTGSGYQAAVLAHLVRRVFSV---ERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAY 142 (212)
T ss_pred HHHhcCCCCC--CEEEEECCCccHHHHHHHHHhCEEEEE---eCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcC
Confidence 3344445444 579999999999988665431112222 222 333333222 431 1111 11123333
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
..||+|..+..+. .+.-++-+.|+|||.+++.
T Consensus 143 ~~fD~I~~~~~~~------------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 143 APFDRILVTAAAP------------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CCcCEEEEccCch------------hhhHHHHHhcCCCcEEEEE
Confidence 6899998665443 2344566899999999885
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.048 Score=57.25 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=91.3
Q ss_pred cccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHH----Hhhcc---c
Q 039518 443 FTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAI----YNRGI---L 513 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~----~~RGl---i 513 (617)
...||+.+-+.+..- +... +. +|+|||||.|--|.+|... |. .+|.-+|-. .-|.++ -..|+ .
T Consensus 92 Pr~dTe~Lve~~l~~---~~~~-~~--~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 92 PRPDTELLVEAALAL---LLQL-DK--RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred cCCchHHHHHHHHHh---hhhc-CC--cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 356788887776511 1111 11 9999999999999999643 32 334444444 444433 33454 2
Q ss_pred ccccccCCCCCCCCCccchhhccccccccc----------------cCCCCCCh---hhHHhhhhhcccCCceEEEecCh
Q 039518 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYK----------------NRGEVCSL---EDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 514 g~~~~~~~~f~typrtyDl~H~~~~~s~~~----------------~~~~~c~~---~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
-+..||=++.+ .+||+|=++==.--.+ .-.....+ ..++-+..++|+|||++++.-..
T Consensus 164 ~~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 164 VVQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred EEeeecccccC---CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 23334444444 5888876542111000 00111222 37888999999999999998776
Q ss_pred HHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEe
Q 039518 575 SLITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 575 ~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
...++|+++.....+ .........-.+.++++++++
T Consensus 241 ~q~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 241 TQGEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CcHHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 667788888888885 222222223344566666654
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.026 Score=56.64 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=52.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh-----------CC---CcEEEEecCCCCCCCC
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER-----------GI---GAMISALSTKQLPYPS 290 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er-----------g~---~~~~~~~d~~~Lpf~d 290 (617)
+.++...+|+|||.|......+-. ++. ...|+++.+...+.|.+. |. ++.+..+|+.+.++..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~--~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCK--KSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--S--EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCc--EEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 455677999999999876555432 443 245667666666555421 22 3445555543332111
Q ss_pred ---CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 291 ---SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 291 ---~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..-|+|++++.. +.++....|.++..-||+|-+++ +.
T Consensus 118 ~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~II-s~ 157 (205)
T PF08123_consen 118 DIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARII-ST 157 (205)
T ss_dssp HHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEE-ES
T ss_pred hhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEE-EC
Confidence 236999998643 34556667888888999887765 44
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.096 Score=52.05 Aligned_cols=135 Identities=15% Similarity=0.080 Sum_probs=73.7
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccC-CC--cEEEeeecCCc-------HHHHHHHHHhCC-CcEEEEecCCCCC------
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPL-DI--QTMSFAPKDGH-------ENQIQFALERGI-GAMISALSTKQLP------ 287 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~-gv--~~v~v~~iDis-------~~~lq~A~erg~-~~~~~~~d~~~Lp------ 287 (617)
.+.++++|+|+=.|.|.|+..+... +. .+..+.+.|.. +.+-..+++... +....-.....++
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 4568889999999999999888764 22 34455554431 111122222211 1111111122222
Q ss_pred -CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCC------CChhhHHHHHHHHHHcCceEEE
Q 039518 288 -YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK------DYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 288 -f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~------~~~~~W~~le~La~~~gw~~v~ 360 (617)
.+..++|.++.... +| ......+..++++.|||||.+++.+.....-.. .+...-..+.+..+..||++..
T Consensus 125 ~~~~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 125 LVPTAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred ccccchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 12334444443332 22 334678899999999999999998643222110 0111112267778889999887
Q ss_pred E
Q 039518 361 R 361 (617)
Q Consensus 361 ~ 361 (617)
+
T Consensus 203 e 203 (238)
T COG4798 203 E 203 (238)
T ss_pred e
Confidence 4
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.048 Score=57.14 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=60.3
Q ss_pred CCeEEEECCCCcHHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHh-------CCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 229 VFQVLDVGCGVASFSAFLLP-LDIQTMSFAPKDGHENQIQFALER-------GIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~-~gv~~v~v~~iDis~~~lq~A~er-------g~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
..+|+=||+|.=-++..+.. +......+.++|+++++++.+++- +..+.+..+|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35899999997655555443 322234678889999999888652 4457888888766665456899999764
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+..-.++..+.|..+.+.++||..+++-.
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 332222467889999999999999999964
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.017 Score=57.69 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=61.2
Q ss_pred eeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcc-ccc-ccccCCCCCCCCCccchhhccccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGI-LGA-FHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGl-ig~-~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
-..|||+|||.|-+..+|... +- .++.-.|-. +.+..+-++-- +.+ -.|..++|+ +++||+|-+.+++.+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl- 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI- 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC-
Confidence 357999999999999998764 21 123333444 56665555320 111 223334443 3899999999999865
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. .=.+..++-||-|++ +++++|.
T Consensus 119 --~-p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 --N-PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred --C-HHHHHHHHHHHHhhc--CcEEEEE
Confidence 2 224567889999998 5788885
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0049 Score=62.38 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=94.8
Q ss_pred CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccccc-ccccCCCCC--CCCCccchhhcccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGA-FHDWCEPFS--TYPRTYDLLHANHL 538 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~-~~~~~~~f~--typrtyDl~H~~~~ 538 (617)
.+.|..|.++|.|||+|-++-+|.+.--- +-=+|-. |-|..+.|+|+--. ||-=-..|. +=++-||||-|..+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 56677999999999999999999764210 1122334 89999999996221 111111244 44789999999999
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEecCh----------------HHHHHHHhhhhcCCceEEEee-----cc
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------------SLITRIRDLAPKFLWDVELHS-----LE 597 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~-----~e 597 (617)
|+-. -.++.++.=.++.|.|||.++++-+. .-...|+.+..+---++..+. .+
T Consensus 198 l~Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 198 LPYL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred HHhh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 9833 35788999999999999999998211 112356666666666654431 23
Q ss_pred ccCCCceeEEEEEec
Q 039518 598 NREKKMESVLICRKK 612 (617)
Q Consensus 598 ~~~~~~~~~l~~~k~ 612 (617)
.|.-.+..+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 444455677788775
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.08 Score=57.01 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=83.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------------CCCcEEEEecCCC-CCCCCCCee
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------------GIGAMISALSTKQ-LPYPSSSFE 294 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------------g~~~~~~~~d~~~-Lpf~d~sFD 294 (617)
+-.+||-+|.|.|.-+..|.+. +....|+-+|+++.|++.++.. ...+.+...|+.+ +.-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 3456999999999999999875 3345888899999999999843 1224444444322 222345899
Q ss_pred EEEecccccccccch-------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 295 MVHCSRCRVDWHAND-------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 295 lV~~s~~l~h~~~d~-------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.|+.-. .-+.++ .++..-+.|.|+++|.+++.....+....- .| .+..-++++|+.+.--
T Consensus 368 ~vIVDl---~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v---fw-~i~aTik~AG~~~~Py 434 (508)
T COG4262 368 VVIVDL---PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV---FW-RIDATIKSAGYRVWPY 434 (508)
T ss_pred EEEEeC---CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce---ee-eehhHHHhCcceeeee
Confidence 998531 112122 356777889999999999976544443222 14 3667788899876653
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.01 Score=58.77 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=73.2
Q ss_pred CCCCCeeeEEeccccccchhhhccC-CCeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCC-Cccchhhcccccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNS-LPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYP-RTYDLLHANHLFS 540 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~-~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typ-rtyDl~H~~~~~s 540 (617)
|.+| -.|||.|||-|.+.++|.+ +.|-..-|- ..+..+.-...||+-=+-+|.-+-++.|| .+||.|=.+..+.
T Consensus 11 I~pg--srVLDLGCGdG~LL~~L~~~k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 11 IEPG--SRVLDLGCGDGELLAYLKDEKQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred cCCC--CEEEecCCCchHHHHHHHHhcCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 4555 5799999999999999976 677665543 12255777899999988899999999999 9999988666665
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.. =..+.+|-||=| =|.-.|++
T Consensus 87 ~~------~~P~~vL~EmlR---Vgr~~IVs 108 (193)
T PF07021_consen 87 AV------RRPDEVLEEMLR---VGRRAIVS 108 (193)
T ss_pred hH------hHHHHHHHHHHH---hcCeEEEE
Confidence 32 124578999955 47788876
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.037 Score=58.00 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=80.0
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----cc---c-ccccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GI---L-GAFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Gl---i-g~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
..|+|+|||.|.++.+|... +-+ +|.-.|-. ..+.++-+. |+ + =+-.||.++++. ..||+|=++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 47999999999999888653 211 23333443 444444432 33 1 223577776642 37998866411
Q ss_pred cc----------ccccCCCCC---------ChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhh-cCCce-EEEeecc
Q 039518 539 FS----------HYKNRGEVC---------SLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAP-KFLWD-VELHSLE 597 (617)
Q Consensus 539 ~s----------~~~~~~~~c---------~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~-~~~W~-~~~~~~e 597 (617)
+. ....+...+ .+..++-+.-++|+|||++++--....-..++++.. ...|. +.+..
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~-- 269 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGR-- 269 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEec--
Confidence 11 000001111 134688889999999999999755555667777665 45564 33332
Q ss_pred ccCCCceeEEEEEec
Q 039518 598 NREKKMESVLICRKK 612 (617)
Q Consensus 598 ~~~~~~~~~l~~~k~ 612 (617)
| -.+.++++++++.
T Consensus 270 D-~~g~~R~~~~~~~ 283 (284)
T TIGR00536 270 D-LNGKERVVLGFYH 283 (284)
T ss_pred C-CCCCceEEEEEec
Confidence 2 3456888888653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.01 Score=58.27 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=53.5
Q ss_pred eEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCC-CccchhhccccccccccCC
Q 039518 470 NAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYP-RTYDLLHANHLFSHYKNRG 546 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typ-rtyDl~H~~~~~s~~~~~~ 546 (617)
+|||+|||.|.++.+|.+. .+=+..| |.. ..+..+.++|+--+..|..+.++.++ ++||+|-+.+.|.+. .
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~gi---D~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~---~ 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGI---EIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT---R 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEE---eCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC---c
Confidence 7999999999999988643 2212222 332 45555666775333344443333344 799999998888643 2
Q ss_pred CCCChhhHHhhhhhcccC
Q 039518 547 EVCSLEDIMLEMDLIIRP 564 (617)
Q Consensus 547 ~~c~~~~~l~e~dRilRP 564 (617)
+...+|-||-|++++
T Consensus 90 ---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 ---NPEEILDEMLRVGRH 104 (194)
T ss_pred ---CHHHHHHHHHHhCCe
Confidence 255677777666554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.01 Score=62.69 Aligned_cols=102 Identities=12% Similarity=0.168 Sum_probs=59.7
Q ss_pred CCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHH----HHhhcccccccccCCCCC--CCCCccchhhcc
Q 039518 464 NETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSA----IYNRGILGAFHDWCEPFS--TYPRTYDLLHAN 536 (617)
Q Consensus 464 ~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~----~~~RGlig~~~~~~~~f~--typrtyDl~H~~ 536 (617)
.....+.|+|+|||.|.++.++.++ |-. ++.-.|-+..+.. +-+.|+-.-++-.+..|- .+| .+|++-..
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeE
Confidence 3345679999999999999888644 321 1122233334433 334465332222222221 244 36887655
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+++-.| . .-....+|-++-|.|+|||.++|-|
T Consensus 223 ~~lh~~---~-~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 223 RILYSA---N-EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhhcC---C-hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 555433 1 1123468889999999999999875
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.039 Score=57.29 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=72.7
Q ss_pred CCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh-cccc-------cccccCCCCCCCCCccchhhc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR-GILG-------AFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R-Glig-------~~~~~~~~f~typrtyDl~H~ 535 (617)
..-++|||+|||.|+++.+|... |-- .|.-.+-. ..+.++-+. ++.+ +..|--+-+...|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~--~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDT--RQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34678999999999999877532 221 11222222 344444433 1211 112222223345678999965
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEE---ecChHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEe
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII---RDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~---~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
+ .|..- ..........++-++=++|+|||.+++ ..+......++.+...+.-.+.+...+ .....|+++.|
T Consensus 143 D-~~~~~-~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~---~~~N~v~~a~~ 216 (262)
T PRK04457 143 D-GFDGE-GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAE---SHGNVAVFAFK 216 (262)
T ss_pred e-CCCCC-CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecC---CCccEEEEEEC
Confidence 4 23310 001112235888999999999999997 233333333444444443333333222 12357788876
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.034 Score=55.86 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=58.2
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCC
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGE 547 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~ 547 (617)
-.|-|||||-|-.|+++.+. .|.-...|..+..=|. -| |. --|+. .-+.|++= -|+|+ =
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vta---cd---ia-----~vPL~--~~svDv~V--fcLSL-----M 133 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTA---CD---IA-----NVPLE--DESVDVAV--FCLSL-----M 133 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEE---S----TT-----S-S----TT-EEEEE--EES--------
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEE---ec---Cc-----cCcCC--CCceeEEE--EEhhh-----h
Confidence 47999999999999887532 4665555555432110 00 00 01222 26777653 44442 2
Q ss_pred CCChhhHHhhhhhcccCCceEEEecChHHHHHHH---hhhhcCCceEEEeec
Q 039518 548 VCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIR---DLAPKFLWDVELHSL 596 (617)
Q Consensus 548 ~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~---~~~~~~~W~~~~~~~ 596 (617)
+=+..++|.|-.|||||||.++|-+-.+-.+.++ +..+++-.+....|.
T Consensus 134 GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 134 GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc
Confidence 3456799999999999999999975544333333 445677888777664
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.05 Score=54.50 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=59.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCeeEEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSFEMVH 297 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlV~ 297 (617)
+.++.+|+|+|+-.|+|+..++++......|.++|+.+-- --..+.+..+|+..-+ +....+|+|+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~ 116 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVL 116 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEE
Confidence 3567889999999999999998763221123344443221 0112566666654432 2344579998
Q ss_pred ecc---cccccccch-------HHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSR---CRVDWHAND-------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~---~l~h~~~d~-------~~~L~el~RvLrPGG~Liis~ 330 (617)
|-. +..++.-|. ..++.-+.++|+|||.+++-.
T Consensus 117 sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 117 SDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred ecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 632 112222121 235666778999999999965
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.032 Score=59.31 Aligned_cols=116 Identities=19% Similarity=0.364 Sum_probs=66.4
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hcc---cc-cccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGI---LG-AFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
.+|+|+|||.|.++.+|... |- .+|+-.|-. ..+..+-+ .|+ |- +-.|+-+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 57999999999999988643 32 223344443 44444433 344 22 2235544443 368999987622
Q ss_pred ccc----------cccCCC--------CCC-hhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhc--CCc
Q 039518 539 FSH----------YKNRGE--------VCS-LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPK--FLW 589 (617)
Q Consensus 539 ~s~----------~~~~~~--------~c~-~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~--~~W 589 (617)
+.. +..+.. +.. +..++-+.-+.|+|||.+++--..+ ..++.++... +.|
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE
Confidence 210 000000 111 2478889999999999999853222 3456666654 345
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.014 Score=61.25 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=80.2
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCC-C-CCCCCeeEEE
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQL-P-YPSSSFEMVH 297 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~L-p-f~d~sFDlV~ 297 (617)
...++.+|||+.+|.|.=+..+++.-..-..+.+.|++...++...++ |.. +.+...|...+ + .....||.|+
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 345677899999999988888877532122677889999988776654 554 34444554443 1 2234699998
Q ss_pred e----cccccccccc------------------hHHHHHHHHHhc----cCCeEEEEEeCCCCCCCCCChhhHHHHHHHH
Q 039518 298 C----SRCRVDWHAN------------------DGILLKEVDRVL----RPNGYFVYSAPPAYRKDKDYPLIWDKLVNLT 351 (617)
Q Consensus 298 ~----s~~l~h~~~d------------------~~~~L~el~RvL----rPGG~Liis~p~~~~~~~~~~~~W~~le~La 351 (617)
. +.. -.+..+ ..++|..+.+.| ||||+++.++-.......+ +.++.++
T Consensus 162 vDaPCSg~-G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE-----~vV~~fl 235 (283)
T PF01189_consen 162 VDAPCSGL-GTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENE-----EVVEKFL 235 (283)
T ss_dssp EECSCCCG-GGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTH-----HHHHHHH
T ss_pred cCCCccch-hhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHH-----HHHHHHH
Confidence 5 211 111111 135799999999 9999999998543322222 2366666
Q ss_pred HHc-CceEE
Q 039518 352 TAM-CWKLI 359 (617)
Q Consensus 352 ~~~-gw~~v 359 (617)
++. .|+.+
T Consensus 236 ~~~~~~~l~ 244 (283)
T PF01189_consen 236 KRHPDFELV 244 (283)
T ss_dssp HHSTSEEEE
T ss_pred HhCCCcEEE
Confidence 654 44444
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.056 Score=53.95 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=59.5
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCCCccchhhcccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
-.+|||+|||.|.|+.+|.+...- |.-.|.. +.+..+-++ |+-...+-....++.-+.+||+|-+..++.++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 368999999999999988765432 3333333 444444443 22111111112244335789999988888654
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
. .-.+..++-++-|++++++.+.+...
T Consensus 141 ---~-~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 141 ---P-QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred ---C-HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 2 22456778888888866666555443
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.026 Score=58.14 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=71.5
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCCCC
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVC 549 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c 549 (617)
.|-|||||-|-.|. -...+|.-|-.|+.+..=+.--|-. -|+. .+|-|++- .|+|+ =+-
T Consensus 183 vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~cDm~~-----------vPl~--d~svDvaV--~CLSL-----Mgt 241 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS-SERHKVHSFDLVAVNERVIACDMRN-----------VPLE--DESVDVAV--FCLSL-----MGT 241 (325)
T ss_pred EEEecccchhhhhh-ccccceeeeeeecCCCceeeccccC-----------CcCc--cCcccEEE--eeHhh-----hcc
Confidence 58899999887765 4456789898888877532110100 1222 37888754 56663 244
Q ss_pred ChhhHHhhhhhcccCCceEEEecChHHHHHHHhhh---hcCCceEEEeecc
Q 039518 550 SLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLA---PKFLWDVELHSLE 597 (617)
Q Consensus 550 ~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~---~~~~W~~~~~~~e 597 (617)
++.+.+.|..|||+|||.++|-+-.+-...++.++ ..|-.++...|.+
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 67799999999999999999976554444444433 6677777766644
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.057 Score=53.97 Aligned_cols=99 Identities=8% Similarity=0.138 Sum_probs=62.2
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccc-c---cccccCCCCCCCCCccchhhcccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGIL-G---AFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGli-g---~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
-.+|||+|||.|.++.+|.+...= |.=.|.. +.+..+.+|--. + -..=.+..+...|.+||+|=+..++.++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~---v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAI---VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 468999999999999999876542 3333444 556555554310 0 0011112222234789988766666543
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
..-.+..++-++.|+++|++++.+...
T Consensus 133 ----~~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 133 ----PASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred ----CHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 223466789999999999888887643
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.081 Score=54.82 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=69.6
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEEEecC
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMISALST 283 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~~~d~ 283 (617)
....+.|.+.+... ++..|||||+|.|.++..|++.+. .+..+|+++.+.+..+++ ..++.+..+|+
T Consensus 16 ~~~~~~Iv~~~~~~-------~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDLS-------EGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFASNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTCG-------TTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTTCSSEEEEES-T
T ss_pred HHHHHHHHHhcCCC-------CCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhhcccceeeecch
Confidence 45566666665332 445699999999999999998873 566778999999888885 34688888898
Q ss_pred CCCCCCC---CCeeEEEecccccccccchHHHHHHHHHhccC
Q 039518 284 KQLPYPS---SSFEMVHCSRCRVDWHANDGILLKEVDRVLRP 322 (617)
Q Consensus 284 ~~Lpf~d---~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrP 322 (617)
..+..+. +.-..|+++. ++. -...++..+...-+.
T Consensus 86 l~~~~~~~~~~~~~~vv~Nl---Py~-is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNL---PYN-ISSPILRKLLELYRF 123 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEE---TGT-GHHHHHHHHHHHGGG
T ss_pred hccccHHhhcCCceEEEEEe---ccc-chHHHHHHHhhcccc
Confidence 8777554 4456677652 322 234566666654444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.059 Score=56.63 Aligned_cols=119 Identities=16% Similarity=0.285 Sum_probs=67.6
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hccc---c-cccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGIL---G-AFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGli---g-~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
.+|||+|||.|.++.+|... |-. +|.-.|-. ..+.++-+ .|+- - +..|+-+.++ +..||+|=++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 57999999999999988753 211 23333443 44444333 3542 2 2234444443 257999887522
Q ss_pred ccc----------cccC--------CCCCC-hhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEE
Q 039518 539 FSH----------YKNR--------GEVCS-LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVE 592 (617)
Q Consensus 539 ~s~----------~~~~--------~~~c~-~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~ 592 (617)
+.. +..+ .+... +..++-+.-+.|+|||.+++--.... ++++++.....|.-.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCcee
Confidence 110 0000 01111 24678889999999999998643333 577777765544433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.08 Score=57.38 Aligned_cols=51 Identities=27% Similarity=0.281 Sum_probs=36.9
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCC
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTK 284 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~ 284 (617)
+|||+=||+|.|+..|++..- .+.++|+++.+++.|+++ ++ ++.+..++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 599999999999999998765 567779999999888765 44 4677665543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.052 Score=52.42 Aligned_cols=129 Identities=17% Similarity=0.244 Sum_probs=71.0
Q ss_pred cccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hccc---
Q 039518 443 FTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGIL--- 513 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGli--- 513 (617)
+..++..=-+.+... .-.+|||+|||+|-.+.+|..+ +-..+-.+ |-. .-+..+.+ -|+-
T Consensus 16 ~d~~t~lL~~~l~~~---------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~v--Di~~~a~~~a~~n~~~n~~~~v~ 84 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKH---------KGGRVLDLGCGSGVISLALAKRGPDAKVTAV--DINPDALELAKRNAERNGLENVE 84 (170)
T ss_dssp HHHHHHHHHHHHHHH---------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEE--ESBHHHHHHHHHHHHHTTCTTEE
T ss_pred CCHHHHHHHHHHhhc---------cCCeEEEecCChHHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHHHhcCccccc
Confidence 334555544444443 2367999999999888877543 22222222 333 33333322 2332
Q ss_pred ccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceE--EEecChHHHHHHHhhhh
Q 039518 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFI--IIRDEKSLITRIRDLAP 585 (617)
Q Consensus 514 g~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~--i~~d~~~~~~~~~~~~~ 585 (617)
-+.+|+.+.+. +..||+|=++-=|..= .......+..++-+-=++|+|||.+ +++.....-..++++..
T Consensus 85 ~~~~d~~~~~~--~~~fD~Iv~NPP~~~~-~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 85 VVQSDLFEALP--DGKFDLIVSNPPFHAG-GDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp EEESSTTTTCC--TTCEEEEEE---SBTT-SHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred ccccccccccc--ccceeEEEEccchhcc-cccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 34556666665 5899998765443200 0011123568888999999999977 44554444444555444
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.1 Score=55.98 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=57.1
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH--hCCC-c--EEEEec--CCCCCCC-CCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE--RGIG-A--MISALS--TKQLPYP-SSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e--rg~~-~--~~~~~d--~~~Lpf~-d~sFDlV~~s~~ 301 (617)
++|||+|.|.|.-+..+-..-+..-+..-++.++..-+.... +.+. . .....+ ..+++++ ...|++|+...-
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 459999999997655554433322233334555555433321 1110 0 001111 2345554 346888876654
Q ss_pred ccccccc--hHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHAN--DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~d--~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.+.... ....++.+..+++|||.|+|..+
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5443311 23478999999999999999875
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.32 Score=48.84 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=74.6
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEec-CCCCCCCCCCeeEEEecccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALS-TKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d-~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
|.||||--|.+..+|++++.. -.+.+.|+++.-++.|++. +. .+.+..+| ++.++ +.+..|.|+.+.+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHH
Confidence 689999999999999999864 3677889999999999875 43 35666666 34443 2223788886542211
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
-....|.+....++..-.|++.-. .. ...+.+.+.+.||.++..
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~--------~~--~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPN--------TH--AYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEES--------S---HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCC--------CC--hHHHHHHHHHCCCEEEEe
Confidence 244567777777777667777431 12 566999999999998874
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.11 Score=57.43 Aligned_cols=156 Identities=12% Similarity=0.147 Sum_probs=86.5
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccC-CCeEEEEeccCCCC-chhHHHHh----hcc-c-ccc
Q 039518 445 TDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS-LPVWVMNIVPISMK-NTLSAIYN----RGI-L-GAF 516 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~-~~v~vmnv~p~~~~-~~l~~~~~----RGl-i-g~~ 516 (617)
.+|+.+.+.+-.. +..+ .+|+|+|||.|.++.+|.. .|-. +|.-.|-. ..+..+-+ .|+ + =+-
T Consensus 236 peTE~LVe~aL~~-----l~~~--~rVLDLGcGSG~IaiaLA~~~p~a--~VtAVDiS~~ALe~AreNa~~~g~rV~fi~ 306 (423)
T PRK14966 236 PETEHLVEAVLAR-----LPEN--GRVWDLGTGSGAVAVTVALERPDA--FVRASDISPPALETARKNAADLGARVEFAH 306 (423)
T ss_pred ccHHHHHHHhhhc-----cCCC--CEEEEEeChhhHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEE
Confidence 4566665555332 2233 3799999999999987753 2321 22223333 44444333 232 1 223
Q ss_pred cccCCC-CCCCCCccchhhccccccccc------------------cCCCCCC-hhhHHhhhhhcccCCceEEEecChHH
Q 039518 517 HDWCEP-FSTYPRTYDLLHANHLFSHYK------------------NRGEVCS-LEDIMLEMDLIIRPQGFIIIRDEKSL 576 (617)
Q Consensus 517 ~~~~~~-f~typrtyDl~H~~~~~s~~~------------------~~~~~c~-~~~~l~e~dRilRP~G~~i~~d~~~~ 576 (617)
.|+.+. ++. ...||+|-++-=+..-. ...+... +..++-+.-+.|+|||++++-=..+.
T Consensus 307 gDl~e~~l~~-~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q 385 (423)
T PRK14966 307 GSWFDTDMPS-EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQ 385 (423)
T ss_pred cchhcccccc-CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccH
Confidence 455443 211 24699988764332100 0001111 23566677889999999988645556
Q ss_pred HHHHHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 577 ITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 577 ~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
-++++++++...|+..... ..-.+.++++++++.
T Consensus 386 ~e~V~~ll~~~Gf~~v~v~--kDl~G~dR~v~~~~~ 419 (423)
T PRK14966 386 GAAVRGVLAENGFSGVETL--PDLAGLDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHCCCcEEEEE--EcCCCCcEEEEEEEh
Confidence 6788888888777643321 123356899988753
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.049 Score=56.33 Aligned_cols=90 Identities=14% Similarity=0.326 Sum_probs=61.4
Q ss_pred CeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc--cccccccCCCCCCCCCccchhhccccccccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI--LGAFHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl--ig~~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
+..++||+|||-|+--+.|.. ..=.|.-++.. .-..-.-+||+ +++. +|-+. +..||+|-|-+|+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~---~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvLD--- 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP---LFKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVLD--- 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh---hcceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhhh---
Confidence 578899999999998888743 11112223333 22223456884 4433 46542 46799999777655
Q ss_pred cCCCCCChh-hHHhhhhhcccCCceEEEe
Q 039518 544 NRGEVCSLE-DIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 544 ~~~~~c~~~-~~l~e~dRilRP~G~~i~~ 571 (617)
||.-. .+|-+|-+-|+|+|.+|+.
T Consensus 163 ----Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 ----RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ----ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 77754 7888999999999999985
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.18 Score=54.26 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=69.0
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLP-LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~-~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
...||.+|+=+|+| .|..+..+++ .+. .+..+|.+++-.+.|++-|....+...+.....--.+.||+|+..-
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga---~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-- 237 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGA---EVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-- 237 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC---eEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC--
Confidence 45788899999887 4467777776 453 6777899999999999988765444322222221123499998542
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
. ...+....+.||+||.+++.+.+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 56788899999999999998754
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.3 Score=53.34 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=71.4
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEE--------------------------------------EeeecCCcHHHHHHHHH
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTM--------------------------------------SFAPKDGHENQIQFALE 271 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v--------------------------------------~v~~iDis~~~lq~A~e 271 (617)
..++|-=||+|++....+-.+.... -+.+.|++..+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 4599999999999887765542100 26689999999999987
Q ss_pred h----CCC--cEEEEecCCCCCCCCCCeeEEEecccccccccc---h----HHHHHHHHHhccCCeEEEEEeC
Q 039518 272 R----GIG--AMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN---D----GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 272 r----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d---~----~~~L~el~RvLrPGG~Liis~p 331 (617)
+ |+. +.+.++|+.+++-+-+.+|+|+|+--.-.=..+ . ..+.+.+.+.++--+.+++++.
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 6 554 788899998887544789999998311110011 1 2345566677887888888874
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.92 Score=48.08 Aligned_cols=107 Identities=15% Similarity=0.244 Sum_probs=60.5
Q ss_pred eEEeccccccchhhhccCCC---eEEEEeccCCCC--chhHHHHhhccccc---ccccCCCCCCCCCccchhhccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLP---VWVMNIVPISMK--NTLSAIYNRGILGA---FHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~---v~vmnv~p~~~~--~~l~~~~~RGlig~---~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
+|+|.|||+|-.++.|.+.+ -++|-=+...+- ++.. +-+-|+=++ ..|-+++-. ..||+|=++-=|-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l~~N~~~~~~v~~s~~~~~v~---~kfd~IisNPPfh- 235 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-LAANGVENTEVWASNLYEPVE---GKFDLIISNPPFH- 235 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-HHHcCCCccEEEEeccccccc---ccccEEEeCCCcc-
Confidence 99999999999999997654 366643332221 1111 222334342 223333333 5899987665554
Q ss_pred cccCCCCCCh----hhHHhhhhhcccCCceEEEe--cChHHHHHHHhhhh
Q 039518 542 YKNRGEVCSL----EDIMLEMDLIIRPQGFIIIR--DEKSLITRIRDLAP 585 (617)
Q Consensus 542 ~~~~~~~c~~----~~~l~e~dRilRP~G~~i~~--d~~~~~~~~~~~~~ 585 (617)
..+=-. +.++-+-=+-|++||-++|= .....-.+++++-.
T Consensus 236 ----~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 236 ----AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred ----CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 222111 25677778899999977663 33344444444433
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.17 Score=43.57 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=56.8
Q ss_pred EEeccccccc--hhhhccCCCeEEEEeccCCCC-chhHHHHhhc-------ccccccccCCC-CCCCC-Cccchhhcccc
Q 039518 471 AMDMNAYCGG--FAVALNSLPVWVMNIVPISMK-NTLSAIYNRG-------ILGAFHDWCEP-FSTYP-RTYDLLHANHL 538 (617)
Q Consensus 471 ~mDm~~~~g~--faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG-------lig~~~~~~~~-f~typ-rtyDl~H~~~~ 538 (617)
++|+|||.|. +.+.+......+.. .|.. ..+...-.+. +-.+..+.... ++.-. .+||++ ....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 56666665434444 2322 2222222221 12233333331 23212 389999 6666
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
...+ .. ...++-|+-|+|+|+|.+++.+..
T Consensus 128 ~~~~---~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHL---LP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhc---CC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 5544 22 778999999999999999998543
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.076 Score=56.81 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=63.4
Q ss_pred HhccCCCCCeeeEEeccccccchhhh--ccCCCeEEEEeccCCCC-chhHHH----Hhhcccc--cc-cccCCCCCCCCC
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVA--LNSLPVWVMNIVPISMK-NTLSAI----YNRGILG--AF-HDWCEPFSTYPR 528 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~--l~~~~v~vmnv~p~~~~-~~l~~~----~~RGlig--~~-~~~~~~f~typr 528 (617)
++.+++.+. .|||.+||.|+|... +....|.- .|.. ..+..+ -.-|+-. ++ .|-. .++.-+.
T Consensus 176 ~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g-----~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~ 247 (329)
T TIGR01177 176 NLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIG-----CDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSE 247 (329)
T ss_pred HHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEE-----EcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccC
Confidence 333455553 799999999999543 33333322 2333 222221 1224433 11 1211 1222136
Q ss_pred ccchhhcccccccccc-CC--CCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCc
Q 039518 529 TYDLLHANHLFSHYKN-RG--EVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLW 589 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~-~~--~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W 589 (617)
+||+|=++--|..-.. .. .......+|-|+-|+|+|||++++--..+ ..++++++.--|
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 8999887633321000 00 11234689999999999999987753221 144455666666
|
This family is found exclusively in the Archaea. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.39 Score=52.76 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=79.8
Q ss_pred CcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEE-EEecCCCCC---CCCCCee
Q 039518 223 NLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMI-SALSTKQLP---YPSSSFE 294 (617)
Q Consensus 223 ~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~-~~~d~~~Lp---f~d~sFD 294 (617)
.+..++|.||||+.+..|.=+.+++..--..-.|.+.|.+...+....++ |+...+ ...|...+| ++. +||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 35668999999999999954444444311111466778887777655443 665443 344555554 444 899
Q ss_pred EEE----eccccccc-------cc----------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH
Q 039518 295 MVH----CSRCRVDW-------HA----------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA 353 (617)
Q Consensus 295 lV~----~s~~l~h~-------~~----------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~ 353 (617)
=|+ |+..-.-. .. -..++|..+..++++||+|+.++-.+.....+.. +..++++
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~v-----V~yaL~K 389 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAV-----VDYALKK 389 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHH-----HHHHHHh
Confidence 997 33211110 00 0245788899999999999999865554433322 4555555
Q ss_pred c-CceEEE
Q 039518 354 M-CWKLIA 360 (617)
Q Consensus 354 ~-gw~~v~ 360 (617)
. .++++-
T Consensus 390 ~p~~kL~p 397 (460)
T KOG1122|consen 390 RPEVKLVP 397 (460)
T ss_pred CCceEecc
Confidence 5 555554
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.019 Score=50.59 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=36.9
Q ss_pred EEECCCCcHHHHHhccCCCcE--EEeeecCCcH---HHHHHHHHhCC--CcEEEEecCCCC-C-CCCCCeeEEEeccccc
Q 039518 233 LDVGCGVASFSAFLLPLDIQT--MSFAPKDGHE---NQIQFALERGI--GAMISALSTKQL-P-YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 233 LDIGCGtG~~a~~La~~gv~~--v~v~~iDis~---~~lq~A~erg~--~~~~~~~d~~~L-p-f~d~sFDlV~~s~~l~ 303 (617)
||||+..|..+..+++.-... ..+..+|..+ ...+..++.+. .+.+..++..+. + ++.++||+|+.- .-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD-g~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID-GD- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE-S--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC-CC-
Confidence 689999998888877641111 1455566666 33334443332 366666665322 1 235789999853 22
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
|-.+.....+..+.+.|+|||.+++-
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 32235566889999999999999884
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.23 Score=50.57 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=51.0
Q ss_pred EEEecCCCC--CCCCCCeeEEEeccccc----c-----cc-----cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh
Q 039518 278 ISALSTKQL--PYPSSSFEMVHCSRCRV----D-----WH-----ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP 341 (617)
Q Consensus 278 ~~~~d~~~L--pf~d~sFDlV~~s~~l~----h-----~~-----~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~ 341 (617)
+..+|..++ .++++++|+|++.--.. . +. +-....+.|++|+|||||.+++... +. .
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~---~~----~ 76 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG---WN----R 76 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec---cc----c
Confidence 444554322 35688888888762110 0 00 1124688999999999999987432 11 0
Q ss_pred hhHHHHHHHHHHcCceEEEEeeeeEEEeeccc
Q 039518 342 LIWDKLVNLTTAMCWKLIARKIQTAIWIKEEN 373 (617)
Q Consensus 342 ~~W~~le~La~~~gw~~v~~~~~~~IwqKp~~ 373 (617)
...+....+..||.+. +..||.|+..
T Consensus 77 --~~~~~~al~~~GF~l~----~~IiW~K~~~ 102 (227)
T PRK13699 77 --VDRFMAAWKNAGFSVV----GHLVFTKNYT 102 (227)
T ss_pred --HHHHHHHHHHCCCEEe----eEEEEECCCC
Confidence 2335566788899865 4668999753
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.061 Score=55.00 Aligned_cols=94 Identities=13% Similarity=0.253 Sum_probs=64.7
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccc-ccccccCCCCC---CCC-Cccchhhccccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGIL-GAFHDWCEPFS---TYP-RTYDLLHANHLFSHYK 543 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGli-g~~~~~~~~f~---typ-rtyDl~H~~~~~s~~~ 543 (617)
.|||+|||-|.++-.|.... -+|.-.|.. .-+.++-.+.+. |+.-||-..-. .-. -+||.|=|..+..|+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv- 137 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV- 137 (243)
T ss_pred eEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc-
Confidence 48999999999999998877 455556666 666666544432 22222221110 011 478888888888776
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
=+.+.++-+..+.|||||.++++.
T Consensus 138 -----~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 138 -----PDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred -----CCHHHHHHHHHHHcCCCcEEEEec
Confidence 234579999999999999999984
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.11 Score=52.52 Aligned_cols=107 Identities=8% Similarity=0.048 Sum_probs=59.5
Q ss_pred HHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccccccc--------------ccC
Q 039518 456 HYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFH--------------DWC 520 (617)
Q Consensus 456 ~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~--------------~~~ 520 (617)
+|...+.+..+ ..|||.|||.|--|.+|.++..=|.-|=..... .. ++-++|+..... -++
T Consensus 28 ~~~~~~~~~~~--~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~--~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 28 KYWPALALPAG--SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQ--FFAENGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred HHHHhhCCCCC--CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHH--HHHHcCCCccccccccccccccCceEEEE
Confidence 34443333333 389999999999999999886544433332222 22 345677643211 122
Q ss_pred CCCCCC---C-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 521 EPFSTY---P-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 521 ~~f~ty---p-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
.-+..+ + .+||+|-...+|.+. ....-..++-.|-++|+|||.+++
T Consensus 104 ~D~~~l~~~~~~~fd~v~D~~~~~~l----~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 104 GDFFALTAADLADVDAVYDRAALIAL----PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CcccCCCcccCCCeeEEEehHhHhhC----CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 212111 1 255665544444321 222224789999999999996444
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.066 Score=54.33 Aligned_cols=97 Identities=18% Similarity=0.331 Sum_probs=64.1
Q ss_pred CCCCCeeeEEeccccccchhhhccC-CC---eEEEEeccCCCCchhHHHHhh-cccccccccCCCCCCCCCccchhhccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNS-LP---VWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEPFSTYPRTYDLLHANH 537 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~-~~---v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~f~typrtyDl~H~~~ 537 (617)
..+..+++|+|+|+|.|.|++++.. .| +.|+ |-|..+..+.+. .+--+=||. |.++|. ||++...+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~ 166 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRH 166 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEES
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccHhhhhccccccccccccccH---Hhhhcc-ccceeeeh
Confidence 6778899999999999999999953 22 3444 333333333331 122222333 355667 99999999
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCC--ceEEEec
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQ--GFIIIRD 572 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~--G~~i~~d 572 (617)
++-.|.. =....||--+=+.|+|| |.++|-|
T Consensus 167 vLh~~~d----~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 167 VLHDWSD----EDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp SGGGS-H----HHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhhhcch----HHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 9987721 22347888999999999 9999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.14 Score=47.85 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=55.4
Q ss_pred CCCCeEEEECCCCcHHHHHhcc-----CCCcEEEeeecCCcHHHHHHHHHhCCC--------cEEEEecCCCCCCCCCCe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLP-----LDIQTMSFAPKDGHENQIQFALERGIG--------AMISALSTKQLPYPSSSF 293 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~-----~gv~~v~v~~iDis~~~lq~A~erg~~--------~~~~~~d~~~Lpf~d~sF 293 (617)
.+..+|+|+|||.|.++..|+. . ....+.++|.++..++.+.++... ..+...+....+ .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCC
Confidence 3456799999999999999987 3 233677789888888877765221 112222221111 14456
Q ss_pred eEEEecccccccccchHH-HHHHHHHhccCCeEEEEEeC
Q 039518 294 EMVHCSRCRVDWHANDGI-LLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~-~L~el~RvLrPGG~Liis~p 331 (617)
++++.- |--.+... +|+-..+ |+-.+++..|
T Consensus 101 ~~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 101 DILVGL----HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred eEEEEe----ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 777632 33334433 3444433 6666666555
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.28 Score=50.71 Aligned_cols=127 Identities=13% Similarity=0.193 Sum_probs=81.0
Q ss_pred CCeeeEEeccccccchhhhccCC-C-e--EEEEeccCCCC-chhHHHH----hhc--ccccccccCCCCCCCCCccchhh
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL-P-V--WVMNIVPISMK-NTLSAIY----NRG--ILGAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~-~-v--~vmnv~p~~~~-~~l~~~~----~RG--lig~~~~~~~~f~typrtyDl~H 534 (617)
.....|+|+|||.|..+=+|..+ + + --+-+-+.... .+-.+.+ ||- +=+=+.+|..++.. .+||+|=
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii 120 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLII 120 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEE
Confidence 33789999999999776666554 2 3 22222222222 1111111 222 12333456666553 4688887
Q ss_pred ccccccccc------------cCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEe
Q 039518 535 ANHLFSHYK------------NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 535 ~~~~~s~~~------------~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
|+-=|=.-. .....|.+++++-=-=++|+|||++.+=-..+.+.++-+++++++|+.+..
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEE
Confidence 764332100 124457788888888999999999999999999999999999999997544
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.47 Score=48.47 Aligned_cols=111 Identities=14% Similarity=0.275 Sum_probs=68.4
Q ss_pred cceecCCCCCc-ccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH
Q 039518 191 QLWWFPGGGTH-FKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA 269 (617)
Q Consensus 191 d~~~Fpgggt~-F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A 269 (617)
.+|.+|.+--- -.-++..|+..+.++|....+.+. .++.++||||.|.--+-..+--+ --..++++.|+++..++.|
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~-~~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA 118 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIP-GKNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSA 118 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCC-cCceEEEeeccCcccccccccce-eecceeecCccCHHHHHHH
Confidence 34666665411 124667899999999987666543 56778999998876543333222 1234788999999998888
Q ss_pred HHh-----CCC--cEEEEe-cC----CCCCCCCCCeeEEEeccccc
Q 039518 270 LER-----GIG--AMISAL-ST----KQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 270 ~er-----g~~--~~~~~~-d~----~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.. +.. +.+... +. ..+--.++.||++.|+--+|
T Consensus 119 ~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 119 KAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred HHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 754 221 222221 11 11112357899999986444
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.29 Score=51.88 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=50.8
Q ss_pred ChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCC--cE
Q 039518 205 GAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIG--AM 277 (617)
Q Consensus 205 ~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~--~~ 277 (617)
++..|+..|.+++...... ....-++||||+|...+-..|..+- ....+.+.|+++..++.|++. ++. +.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~--~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPG--IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCG--CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccc--cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 4568988898888653332 1225579999999986655554331 234788889999999999864 222 44
Q ss_pred EEEecC-----CCCCCCCCCeeEEEecccc
Q 039518 278 ISALST-----KQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 278 ~~~~d~-----~~Lpf~d~sFDlV~~s~~l 302 (617)
+..... ..+-.+++.||+..|+--+
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE----
T ss_pred EEEcCCccccchhhhcccceeeEEecCCcc
Confidence 433321 1122234689999998533
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.011 Score=51.67 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=54.2
Q ss_pred EEeccccccchhhhccCCC--eEEEEeccCCCC-chhHHHHhhc----c-cccccccCCCCCCCCCccchhhcccc-ccc
Q 039518 471 AMDMNAYCGGFAVALNSLP--VWVMNIVPISMK-NTLSAIYNRG----I-LGAFHDWCEPFSTYPRTYDLLHANHL-FSH 541 (617)
Q Consensus 471 ~mDm~~~~g~faa~l~~~~--v~vmnv~p~~~~-~~l~~~~~RG----l-ig~~~~~~~~f~typrtyDl~H~~~~-~s~ 541 (617)
|||+|||.|....+|.+.- ---..+.-.|-. +.|..+.++. + +-.++.=.+.++..-.+||+|=+.++ |.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999998886431 011334444544 6777776666 2 11111111222322369999998766 443
Q ss_pred cccCCCCCChhhHHhhhhhcccCCc
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQG 566 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G 566 (617)
-+.=.++.+|=++=++|||||
T Consensus 81 ----~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 ----LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ----SSHHHHHHHHHHHHHTEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCC
Confidence 344456789999999999998
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.31 Score=48.86 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=26.2
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA 269 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A 269 (617)
+.|||||.|.+...|+...+.. .+-+.+|-....+..
T Consensus 64 faDIGCGyGGLlv~Lsp~fPdt-LiLGmEIR~KVsdYV 100 (249)
T KOG3115|consen 64 FADIGCGYGGLLMKLAPKFPDT-LILGMEIRDKVSDYV 100 (249)
T ss_pred EEeeccCccchhhhccccCccc-eeeeehhhHHHHHHH
Confidence 8999999999999999887654 344555544433333
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.051 Score=54.02 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=73.2
Q ss_pred eeEEeccccccchhhhcc--CCCeEEEEeccCCCC--chhHHHHhhcccccccccCCCCCC----C-CCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALN--SLPVWVMNIVPISMK--NTLSAIYNRGILGAFHDWCEPFST----Y-PRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~--~~~v~vmnv~p~~~~--~~l~~~~~RGlig~~~~~~~~f~t----y-prtyDl~H~~~~~ 539 (617)
..++|+|||.|.|.+++. ..+.-++-|-....- ..+.-+..+||--+.--.+.+... . |.+.|.||- .|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i--~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI--NF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE--ES
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE--eC
Confidence 389999999999999884 333333333333322 556667777874444444444331 1 367777772 22
Q ss_pred c-ccc--cCCCCCCh-hhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcC--CceEE
Q 039518 540 S-HYK--NRGEVCSL-EDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKF--LWDVE 592 (617)
Q Consensus 540 s-~~~--~~~~~c~~-~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~--~W~~~ 592 (617)
. -|- ...+|-.+ ...|-++-|+|+|||.+.++ |..+..+.+.+.+... .++..
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 2 111 11224444 47888999999999999986 7777777777777664 55544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.2 Score=48.59 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=43.8
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCC--CCCCC-eeEEEec
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLP--YPSSS-FEMVHCS 299 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lp--f~d~s-FDlV~~s 299 (617)
.|||+.||.|..+..+++... .+.++|+++..++.|+.+ |+ ++.+..+|..++. +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 499999999999999999865 456679999999988876 54 4788888854331 11122 8999986
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.19 Score=50.67 Aligned_cols=29 Identities=7% Similarity=-0.255 Sum_probs=22.8
Q ss_pred eeEEeccccccchhhhccCCC--eEEEEecc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP--VWVMNIVP 497 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~--v~vmnv~p 497 (617)
..|||.|||.|-.|.+|.++. |.-+-++|
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~ 66 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSE 66 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCH
Confidence 589999999999999998874 55554444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.16 Score=51.80 Aligned_cols=130 Identities=16% Similarity=0.244 Sum_probs=68.7
Q ss_pred eeeEEeccccccc----hhhhccC-CCeEEEEeccCCCCchhHHHHhhcc---ccc-ccccCCCCCC----C-CCccchh
Q 039518 468 IRNAMDMNAYCGG----FAVALNS-LPVWVMNIVPISMKNTLSAIYNRGI---LGA-FHDWCEPFST----Y-PRTYDLL 533 (617)
Q Consensus 468 ~Rn~mDm~~~~g~----faa~l~~-~~v~vmnv~p~~~~~~l~~~~~RGl---ig~-~~~~~~~f~t----y-prtyDl~ 533 (617)
-++|||+|||+|. +|+++.. -.|..+=+-|.-..-.-+.+-+-|+ |-+ ..|..+.++. . ..+||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 5799999998885 3444432 2344443333211111112223343 111 1233333222 1 2589999
Q ss_pred hccccccccccCCCCCChhhHHhhhhhcccCCceEEEec---------C----h----HHHHHHHh----hhhcCCceEE
Q 039518 534 HANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD---------E----K----SLITRIRD----LAPKFLWDVE 592 (617)
Q Consensus 534 H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d---------~----~----~~~~~~~~----~~~~~~W~~~ 592 (617)
-.+.-=..| ..++-++=|.|||||.+|+.+ . . .....+++ +...=+|++.
T Consensus 149 fiDa~k~~y---------~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~ 219 (234)
T PLN02781 149 FVDADKPNY---------VHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEIS 219 (234)
T ss_pred EECCCHHHH---------HHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEE
Confidence 755433333 356677789999999999631 1 0 12233433 4445567776
Q ss_pred EeeccccCCCceeEEEEEec
Q 039518 593 LHSLENREKKMESVLICRKK 612 (617)
Q Consensus 593 ~~~~e~~~~~~~~~l~~~k~ 612 (617)
+... .+.++|++|.
T Consensus 220 ~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 220 QISI------GDGVTLCRRL 233 (234)
T ss_pred EEEe------CCccEEEEEe
Confidence 6643 3678888875
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.19 Score=51.30 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=61.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh-------ccccc-ccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR-------GILGA-FHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R-------Glig~-~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
++|||+|||.|+|.-.|...++- .|.-.|.. ++|.--+.. +..-+ +.+|-+-.+ |++-++-.|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~------d~~~~Dvsf 148 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP------DFATFDVSF 148 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC------CceeeeEEE
Confidence 58999999999999999877541 12222333 344332222 11111 224444322 444444333
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEE-------------------ecC---hHHHHHHHhhhhcCCceEEEe
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIII-------------------RDE---KSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~-------------------~d~---~~~~~~~~~~~~~~~W~~~~~ 594 (617)
. ++..+|-.|.+.|+| |.+|+ +|. ..+++++...+..+-|++.-.
T Consensus 149 i---------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 149 I---------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred e---------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 2 112357777788888 66664 343 366777777788888886544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.27 Score=50.92 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=65.3
Q ss_pred CCCCeeeEEeccccccchhhhccC----------CCeEEEEeccCCCCchhHHHHhhccc-ccccc----c-C---CCCC
Q 039518 464 NETEIRNAMDMNAYCGGFAVALNS----------LPVWVMNIVPISMKNTLSAIYNRGIL-GAFHD----W-C---EPFS 524 (617)
Q Consensus 464 ~~~~~Rn~mDm~~~~g~faa~l~~----------~~v~vmnv~p~~~~~~l~~~~~RGli-g~~~~----~-~---~~f~ 524 (617)
+.+.-=.+|||.+|+|--|=.+++ ..|.|.-+ .+++|.+.-.|-.= +..-+ | | |.+|
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di----np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI----NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC----CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 344457899999999865544432 34554433 23788776666421 11212 2 2 3344
Q ss_pred CCC-CccchhhccccccccccCCCCCC-hhhHHhhhhhcccCCceEEEecChHHH-HHHHhhh
Q 039518 525 TYP-RTYDLLHANHLFSHYKNRGEVCS-LEDIMLEMDLIIRPQGFIIIRDEKSLI-TRIRDLA 584 (617)
Q Consensus 525 typ-rtyDl~H~~~~~s~~~~~~~~c~-~~~~l~e~dRilRP~G~~i~~d~~~~~-~~~~~~~ 584 (617)
|| .+||+.-.+ |. ...|. ++..|-|+-|||+|||-|.+=+-..+- +.++.+.
T Consensus 173 -Fdd~s~D~yTia--fG-----IRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 173 -FDDDSFDAYTIA--FG-----IRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred -CCCCcceeEEEe--cc-----eecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 44 899986532 22 23343 678999999999999998876554443 3444443
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.29 Score=54.34 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=60.3
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHH---Hhh-cccccc----cccCCCCCC--CC
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAI---YNR-GILGAF----HDWCEPFST--YP 527 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~---~~R-Glig~~----~~~~~~f~t--yp 527 (617)
|+...| .+|+||+||.||++.++... +--| +-.|-. +.+..+ ++| |+--.. .|..+. +. -+
T Consensus 234 L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v---~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~~~ 307 (426)
T TIGR00563 234 LAPQNE--ETILDACAAPGGKTTHILELAPQAQV---VALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWAEN 307 (426)
T ss_pred hCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeE---EEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccccc
Confidence 445555 58999999999999777542 2222 222333 333333 333 431001 121111 11 13
Q ss_pred Cccchhhcc------ccccccccCCCCC----C-------hhhHHhhhhhcccCCceEEEe-------cChHHHHHH
Q 039518 528 RTYDLLHAN------HLFSHYKNRGEVC----S-------LEDIMLEMDLIIRPQGFIIIR-------DEKSLITRI 580 (617)
Q Consensus 528 rtyDl~H~~------~~~s~~~~~~~~c----~-------~~~~l~e~dRilRP~G~~i~~-------d~~~~~~~~ 580 (617)
.+||.|-.+ |++..- .+..-. . -..+|-++=|+|||||.+|++ ++.+++...
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~-p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~ 383 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRH-PDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAF 383 (426)
T ss_pred cccCEEEEcCCCCCCcccccC-cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHH
Confidence 679999754 333210 000000 0 136889999999999999998 455555443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.18 Score=46.43 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=32.4
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER 272 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er 272 (617)
+||||||.|.++..+++.+... .+.++|.++.+.+.++++
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~-~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEG-RVIAFEPLPDAYEILEEN 41 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCC-EEEEEecCHHHHHHHHHH
Confidence 8999999999999998876542 567778888888777654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.9 Score=42.11 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=79.6
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcH----HHHHHHHHhCCCcEEEEecCCCCC----CCCCCe
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHE----NQIQFALERGIGAMISALSTKQLP----YPSSSF 293 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~----~~lq~A~erg~~~~~~~~d~~~Lp----f~d~sF 293 (617)
..+.+.+|.+||=+|+.+|....++..--... .+.+++.++ +.+..|.+|. ++.-...|+ +.| .--+..
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G-~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~V 146 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEG-RIYAVEFSPRPMRELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKV 146 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCC-cEEEEEecchhHHHHHHHHHhCC-Cceeeeccc-CCcHHhhhhcccc
Confidence 34678899999999999998887776541111 233444444 4455666653 233333444 233 123458
Q ss_pred eEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhHHHHHHHHHHcCceEEEE
Q 039518 294 EMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
|+|++- +. -+.....+..++...|++||+++++.-...-+. .+....+++-..-++..+|+++..
T Consensus 147 Dviy~D-VA--Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 147 DVIYQD-VA--QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred cEEEEe-cC--CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEE
Confidence 999853 11 122345688899999999998888753222222 222334554445556778887764
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.81 Score=47.31 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+..+|||||||.=-++.........+ .+.+.|++..++++...- +.+..+.+.|...-+ +....|+.+..-.+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l- 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL- 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H-
T ss_pred CCchhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH-
Confidence 35679999999999999888765444 788999999999887654 667777777764433 45679999865433
Q ss_pred ccccch-HHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh--h-hHHHHHHHHHHcCceEEE
Q 039518 304 DWHAND-GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP--L-IWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 304 h~~~d~-~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~--~-~W~~le~La~~~gw~~v~ 360 (617)
|..+.. ...-.++.+.++ .=.+++|.|...-.....+ . .-..++.++..-+|.+-.
T Consensus 182 p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccccccCHHHHHHHhcccCCceeee
Confidence 333111 112223333332 2357777775443332222 1 112288888888887433
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.098 Score=55.34 Aligned_cols=98 Identities=12% Similarity=0.181 Sum_probs=60.6
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh------c--ccccccccCCCCCCCCCcc----c-hhh
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR------G--ILGAFHDWCEPFSTYPRTY----D-LLH 534 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R------G--lig~~~~~~~~f~typrty----D-l~H 534 (617)
.+|+|+|||.|.++..|.+.-.=..++++.|-. .-|..+.++ + +.++..|.++.++. |..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEEEE
Confidence 479999999999988886541002356777877 666666654 2 23455666655432 3333 2 233
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
..+.|.++ ..=....+|-++=+.|+|||.++|.
T Consensus 144 ~gs~~~~~----~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNF----TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCC----CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 22333322 1222347899999999999999984
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=91.72 E-value=4.8 Score=41.52 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCc-HHHHHhccCCCcEEEeeecCCcHHHHHH----HHHhCCCcEEEEecC-CCCCC-CCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVA-SFSAFLLPLDIQTMSFAPKDGHENQIQF----ALERGIGAMISALST-KQLPY-PSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG-~~a~~La~~gv~~v~v~~iDis~~~lq~----A~erg~~~~~~~~d~-~~Lpf-~d~sFDlV~~s~ 300 (617)
.|++||=+|=..- +++..|... .. .|+-+|+++..+++ |.+.|.++.....|+ ..||- -.++||++++--
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~-~~--~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL-PK--RITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---S--EEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE--
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC-CC--eEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC
Confidence 4667999996655 334444322 22 56668999998864 455688888888886 33442 147899999753
Q ss_pred cccccc-cchHHHHHHHHHhccCCe-EEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEe
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNG-YFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWI 369 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG-~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~~~Iwq 369 (617)
++. +-...++......||.-| ..+++-. +.+.....|..+++.+.++|+-+...-.+...+.
T Consensus 121 ---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~----~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ 184 (243)
T PF01861_consen 121 ---PYTPEGLKLFLSRGIEALKGEGCAGYFGFT----HKEASPDKWLEVQRFLLEMGLVITDIIPDFNRYE 184 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEEEEB-
T ss_pred ---CCCHHHHHHHHHHHHHHhCCCCceEEEEEe----cCcCcHHHHHHHHHHHHHCCcCHHHHHhhhcccc
Confidence 333 234568888889998766 4444321 2222345588999999999998877665554443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.47 Score=49.34 Aligned_cols=103 Identities=9% Similarity=0.104 Sum_probs=53.6
Q ss_pred CCCeeeEEeccccccchhhhccCCC-eEEEEeccCCCC-chhHHHHhh-----c-c----cccc-cccCCCCCCCCCccc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMK-NTLSAIYNR-----G-I----LGAF-HDWCEPFSTYPRTYD 531 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~-~~l~~~~~R-----G-l----ig~~-~~~~~~f~typrtyD 531 (617)
..+-++||++|||.|+++..+.+.+ +- +++-.+.. +.+..+-+. | + +-+. .|-.+-....+++||
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 3345699999999999998887654 32 22222222 222222221 0 0 0011 111111112367899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+|=.+.... + .....--....+-.+-|+|+|||.+++.
T Consensus 148 vIi~D~~~~-~-~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDP-V-GPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCC-C-CcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 986543221 1 0011111235566788999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.3 Score=48.35 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=65.1
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----CCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
.+.|+|+|+|.++...+...- .+.+++.++.....|.++ ..++.+..+|+....| ...|+|+|-..--..
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 399999999988776665422 455667788887888876 2357788888888877 446999985311111
Q ss_pred c-cchHHHHHHHHHhccCCeEEEE
Q 039518 306 H-ANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 306 ~-~d~~~~L~el~RvLrPGG~Lii 328 (617)
. +.....+..+...||-+|.++=
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hcccccHHHHHHHHHhhcCCcccc
Confidence 1 2344578888889999988764
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.57 Score=49.67 Aligned_cols=140 Identities=9% Similarity=0.046 Sum_probs=74.8
Q ss_pred CeeeEEeccccccchhhhccC----CCeEEEEeccCCCC-chhHHHH--hhcccc----cccccCCCCCCCCCccchhhc
Q 039518 467 EIRNAMDMNAYCGGFAVALNS----LPVWVMNIVPISMK-NTLSAIY--NRGILG----AFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~----~~v~vmnv~p~~~~-~~l~~~~--~RGlig----~~~~~~~~f~typrtyDl~H~ 535 (617)
.-+.|+|+|||-|++.|.+.- ...-+.|+--.... +.-.-.+ +.||=. ..+|--+..+ -...||+|=+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEE
Confidence 568999999998877554432 23334444322222 1111122 234311 1122222211 1267999987
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEecC---hHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE---KSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~---~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
+ .+-.+ ++=.-..+|-.+=|.|||||++++|-- ..++-.+-....-=.|+....-|-. +..-+.++|++|.
T Consensus 202 ~-ALi~~----dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~-~~v~Nsvi~~r~~ 275 (296)
T PLN03075 202 A-ALVGM----DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPT-DEVINSVIIARKP 275 (296)
T ss_pred e-ccccc----ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCC-CCceeeEEEEEee
Confidence 7 33322 222335789999999999999999942 1111111111111178876665443 3366789999986
Q ss_pred c
Q 039518 613 F 613 (617)
Q Consensus 613 ~ 613 (617)
-
T Consensus 276 ~ 276 (296)
T PLN03075 276 G 276 (296)
T ss_pred c
Confidence 3
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.52 Score=47.46 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhcc------CCCCCeeeEEeccccccchhhhccCCCe-EEEEeccCCCCch---------hHHHHhhc
Q 039518 448 SFWQDQVRHYWQLMN------VNETEIRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNT---------LSAIYNRG 511 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~------~~~~~~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~---------l~~~~~RG 511 (617)
..+.+.++.|++.|= +....==.||.+|||.|.---++-..|. =|..+-|...--. -+.=++|=
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~f 130 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERF 130 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEE
Confidence 456777777876442 2222223579999999987777765555 4555555432110 00111222
Q ss_pred ccccccccCCCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh----HHHHHH
Q 039518 512 ILGAFHDWCEPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----SLITRI 580 (617)
Q Consensus 512 lig~~~~~~~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----~~~~~~ 580 (617)
..|- -|.++--+ -+||.|-+.-++ |+--+....|-|+-|||||||.+|+=+.+ +.|+++
T Consensus 131 vva~----ge~l~~l~d~s~DtVV~TlvL------CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i 194 (252)
T KOG4300|consen 131 VVAD----GENLPQLADGSYDTVVCTLVL------CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI 194 (252)
T ss_pred Eeec----hhcCcccccCCeeeEEEEEEE------eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHH
Confidence 2222 24444334 789988754332 44445568999999999999999996543 455554
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.2 Score=53.77 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHH----Hhhcccc---cccccCCCCCCC
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAI----YNRGILG---AFHDWCEPFSTY 526 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~----~~RGlig---~~~~~~~~f~ty 526 (617)
..+.+.+..+ .+|||+|||.|.+++.|.+. .-.|+.|-... .-+..+ -+.|+-. +..|-.+....
T Consensus 72 ll~~L~i~~g--~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~- 146 (322)
T PRK13943 72 FMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGIENVIFVCGDGYYGVPE- 146 (322)
T ss_pred HHHhcCCCCC--CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCChhhcccc-
Confidence 3444556655 47999999999999887542 11233222111 222222 2234311 11222222221
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
...||+|..+.-.. .+.-.+-|.|+|||.+++-.
T Consensus 147 ~~~fD~Ii~~~g~~------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVD------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchH------------HhHHHHHHhcCCCCEEEEEe
Confidence 24689988542221 23334567999999988853
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.3 Score=48.59 Aligned_cols=45 Identities=13% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCCCeeEEEecccccccccc-h-------------------------------------HHHHHHHHHhccCCeEEEEE
Q 039518 288 YPSSSFEMVHCSRCRVDWHAN-D-------------------------------------GILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 288 f~d~sFDlV~~s~~l~h~~~d-~-------------------------------------~~~L~el~RvLrPGG~Liis 329 (617)
||+++.++++|+.++ ||... | ..+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 789999999999765 66521 1 12344455678999999998
Q ss_pred eCCC
Q 039518 330 APPA 333 (617)
Q Consensus 330 ~p~~ 333 (617)
....
T Consensus 237 ~~Gr 240 (386)
T PLN02668 237 CLGR 240 (386)
T ss_pred EecC
Confidence 7544
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.1 Score=46.50 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=57.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHH--HHHHHHh--------CCCcEEEEec---CCCCCCCCCC-ee
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQ--IQFALER--------GIGAMISALS---TKQLPYPSSS-FE 294 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~--lq~A~er--------g~~~~~~~~d---~~~Lpf~d~s-FD 294 (617)
..+||++|+|+|..+...+..... .+.-.|..... ++..... |..+.+...+ .....+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~--~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGA--EVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcc--eeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 345999999999777666653221 12222322222 2222111 2233333221 1111111122 99
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+|+++.|+.+-. .++.++.-+..+|-.+|.+++..+
T Consensus 165 lilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999877644 788899999999999997777654
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=91.17 E-value=3.2 Score=43.36 Aligned_cols=126 Identities=11% Similarity=0.118 Sum_probs=75.6
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCC--CCCeeEEEeccccccc---
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYP--SSSFEMVHCSRCRVDW--- 305 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~--d~sFDlV~~s~~l~h~--- 305 (617)
+++|+-||.|.+..-+.+.|.. .+.++|+++.+++..+.+.... +...|+..+... ...+|+++.+.---.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 5999999999998888888865 4667899999988777664332 455666655422 3569999976311111
Q ss_pred -----ccc-hHHHHHHH---HHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 306 -----HAN-DGILLKEV---DRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 306 -----~~d-~~~~L~el---~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
..+ ...++.++ .+.++|. ++++... .......+...+..+.+.++++|+.+...
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV-~g~~~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENV-KGLLTHDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcC-cchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence 112 22244444 4445666 3333221 12222223345777888888999876543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.35 Score=51.32 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=66.1
Q ss_pred eeeEEeccccccchhhhccCCCe-EEEEeccCCCCchhHHHHhhccccccc-ccC-----CCCCCCCCccchhhcccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNTLSAIYNRGILGAFH-DWC-----EPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~l~~~~~RGlig~~~-~~~-----~~f~typrtyDl~H~~~~~s 540 (617)
=|.|+|+|||-|-|.=.|....- .|+-+=|..-. .+|+-+-+-++|.-. ... |.++. ..+||+|=+.|++=
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 37999999999999877766554 78888776654 333444344444211 111 22344 58999999888876
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
| |=+-.+.|.++=..|||||-+|+-
T Consensus 194 H------rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 194 H------RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred c------cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3 334456788999999999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.044 Score=48.62 Aligned_cols=96 Identities=16% Similarity=0.291 Sum_probs=52.6
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hc-------ccccccccCCCCCCCCCccchhhccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RG-------ILGAFHDWCEPFSTYPRTYDLLHANH 537 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RG-------lig~~~~~~~~f~typrtyDl~H~~~ 537 (617)
.|||++||.|.|+.++...- .-++.=.|-. ..+.++-. .| ..|-+.+..+.++ +..||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECC
Confidence 69999999999998886543 1222222222 12111111 11 1222223333344 38899998877
Q ss_pred cccccc---cCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 538 LFSHYK---NRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 538 ~~s~~~---~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
-|.... ....+ ....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~~~~-~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALRR-LYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GGC-HHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhHH-HHHHHHHHHHHHcCCCeEEEE
Confidence 776321 00111 345778899999999999876
|
... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.57 Score=49.72 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=63.6
Q ss_pred CeeeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHHHhh----cccccccccCCCCCCCC--Cccchhhccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAIYNR----GILGAFHDWCEPFSTYP--RTYDLLHANH 537 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~~~R----Glig~~~~~~~~f~typ--rtyDl~H~~~ 537 (617)
.-+||+|.|||.|=+|=|..+. +|.-.-+=| -.++++.|- |+--+.+.=+-.-++-| +.||+|=|+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp----~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDP----QAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCH----HHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 4599999999999886555433 344333322 222333221 11100111111112333 5899988554
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-HHHHHHHhhhhcCCceEEEee
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~ 595 (617)
|=.- +..+.=++-|.|+|||++|++.-. +-.+.|.+...+=-|++..+.
T Consensus 238 LA~v---------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 238 LAEV---------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred hHHH---------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 3221 123445678999999999999532 224556666666677766654
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.19 Score=48.60 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=47.5
Q ss_pred CCCeeEEEecccccccc----cc------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCC-ChhhHHHHHHHHHHcCceE
Q 039518 290 SSSFEMVHCSRCRVDWH----AN------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKD-YPLIWDKLVNLTTAMCWKL 358 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~----~d------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~-~~~~W~~le~La~~~gw~~ 358 (617)
.++||.+.|..++.|.- .| ....+.++.++|||||.|+++.|-....... ..+++..+.-..--.||+.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 46799999887777753 11 2568999999999999999999844321111 1123333444444678988
Q ss_pred EEE
Q 039518 359 IAR 361 (617)
Q Consensus 359 v~~ 361 (617)
+..
T Consensus 141 i~t 143 (177)
T PF03269_consen 141 IDT 143 (177)
T ss_pred Eee
Confidence 863
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.71 Score=48.48 Aligned_cols=103 Identities=10% Similarity=0.113 Sum_probs=54.7
Q ss_pred CCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHHHHhh------cc-----cc-cccccCCCCCCCCCccch
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAIYNR------GI-----LG-AFHDWCEPFSTYPRTYDL 532 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~~~R------Gl-----ig-~~~~~~~~f~typrtyDl 532 (617)
..-++|||+|||.|+.+..+++. ++--+-+|=.|. ..+.++-+. |+ +- +..|-.+-..+-+.+||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 45689999999999999988776 443222232222 233333221 11 00 111111111222478999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|=.+. +..+. ....---..++-++-|+|+|||.+++.
T Consensus 154 Ii~D~-~dp~~-~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDS-TDPVG-PAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECC-CCCCC-chhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 86432 22110 000000135667889999999999986
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.50 E-value=2.6 Score=40.97 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=72.7
Q ss_pred EECCCCcHHHHHhccC-C-CcEEEeeecCCcHHHHH----------HHHHhCCCcEEEEecCCCCC----CCCCCeeEEE
Q 039518 234 DVGCGVASFSAFLLPL-D-IQTMSFAPKDGHENQIQ----------FALERGIGAMISALSTKQLP----YPSSSFEMVH 297 (617)
Q Consensus 234 DIGCGtG~~a~~La~~-g-v~~v~v~~iDis~~~lq----------~A~erg~~~~~~~~d~~~Lp----f~d~sFDlV~ 297 (617)
=||=|.=+|+..|++. + ...+-.+..|..++..+ ..++.|..+.+ -.|+..+. ...+.||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEE
Confidence 3677777888888876 2 22233334454443332 22233554433 33555553 3567899999
Q ss_pred ecccccccc---c--c---------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 298 CSRCRVDWH---A--N---------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 298 ~s~~l~h~~---~--d---------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
-++ -|.. + + ...++..+.++|+++|.+.|+.-... +.. .|+ ++.+++..|+.++..
T Consensus 81 FNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---py~--~W~-i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 81 FNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---PYD--SWN-IEELAAEAGLVLVRK 150 (166)
T ss_pred EeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---CCc--ccc-HHHHHHhcCCEEEEE
Confidence 774 2322 0 0 13478899999999999999864222 122 264 779999999988763
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.46 Score=53.00 Aligned_cols=103 Identities=14% Similarity=0.241 Sum_probs=56.8
Q ss_pred cCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHh----hcccc---cccccCCCCCCCCCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYN----RGILG---AFHDWCEPFSTYPRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~----RGlig---~~~~~~~~f~typrty 530 (617)
.+..+ .+|+|||||.|+++.++.+. +--|+ -.|-. +.+..+-+ .|+-. +-.|..+....++.+|
T Consensus 247 ~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~---avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 247 DPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVV---ALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEE---EEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccC
Confidence 34455 57999999999998777542 22222 22333 44433332 24311 2234433323345789
Q ss_pred chhhcc------ccccc-----cccCCCCCCh-------hhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHAN------HLFSH-----YKNRGEVCSL-------EDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~------~~~s~-----~~~~~~~c~~-------~~~l~e~dRilRP~G~~i~~ 571 (617)
|+|=++ |.+.. |. .+.-.+ ..+|-+.=|+|+|||.+|++
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~--~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYN--KTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhc--CCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 998543 22221 00 000111 25788899999999999976
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.42 Score=53.13 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=56.4
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHH---Hhh-cc-cc-cccccCCCCCCC-CCcc
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAI---YNR-GI-LG-AFHDWCEPFSTY-PRTY 530 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~---~~R-Gl-ig-~~~~~~~~f~ty-prty 530 (617)
+++..| ..|||+|||.|+++.++.+. +.-| +-.|.. ..+..+ ++| |+ +- +-+|-.+....+ +.+|
T Consensus 240 l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v---~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 240 LAPQNG--ERVLDACAAPGGKTAHILELAPQAQV---VALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred cCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEE---EEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 445555 47999999999999877543 1222 222333 333333 333 32 11 223333322223 3679
Q ss_pred chhhccccccccc-cCCC------C---------CChhhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHANHLFSHYK-NRGE------V---------CSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~~~~s~~~-~~~~------~---------c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.|=++--+|..- ...+ + .....+|-+.=++|+|||.++++
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9886443222100 0000 0 01136788999999999999987
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.4 Score=41.73 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=57.5
Q ss_pred eeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCC-C-CCCCeeEEEeccccccccc--------chHHHHHHHHHh
Q 039518 256 FAPKDGHENQIQFALER----GI--GAMISALSTKQLP-Y-PSSSFEMVHCSRCRVDWHA--------NDGILLKEVDRV 319 (617)
Q Consensus 256 v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lp-f-~d~sFDlV~~s~~l~h~~~--------d~~~~L~el~Rv 319 (617)
|.+.|+-+++++..+++ +. ++.+...+=+++. + +.+++|+|+.+...++-.+ .--.+|+.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 45679999999988876 22 3666665544443 2 3358999998754444221 124579999999
Q ss_pred ccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC
Q 039518 320 LRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC 355 (617)
Q Consensus 320 LrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~g 355 (617)
|+|||.+.++. |.-.+......+.+++.++.+.
T Consensus 82 L~~gG~i~iv~---Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 82 LKPGGIITIVV---YPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp EEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-
T ss_pred hccCCEEEEEE---eCCCCCCHHHHHHHHHHHHhCC
Confidence 99999999987 3333333333444666666543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.75 Score=49.62 Aligned_cols=67 Identities=25% Similarity=0.397 Sum_probs=37.0
Q ss_pred CCCCCCeeEEEecccccccccc-h--------------------------------------HHHHHHHHHhccCCeEEE
Q 039518 287 PYPSSSFEMVHCSRCRVDWHAN-D--------------------------------------GILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 287 pf~d~sFDlV~~s~~l~h~~~d-~--------------------------------------~~~L~el~RvLrPGG~Li 327 (617)
-||+++.|+++|+.++ ||... | ..+|+-=.+-|+|||.++
T Consensus 102 LfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mv 180 (334)
T PF03492_consen 102 LFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRMV 180 (334)
T ss_dssp -S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEEE
Confidence 3789999999998754 55411 1 123444556789999999
Q ss_pred EEeCCCCCCCC---CChhhHHHHHHHHHHc
Q 039518 328 YSAPPAYRKDK---DYPLIWDKLVNLTTAM 354 (617)
Q Consensus 328 is~p~~~~~~~---~~~~~W~~le~La~~~ 354 (617)
++........+ .....|+-+.+.+..|
T Consensus 181 l~~~gr~~~~~~~~~~~~~~~~l~~~l~dM 210 (334)
T PF03492_consen 181 LTFLGRDEEDPSSTGSCMLWDLLADALRDM 210 (334)
T ss_dssp EEEEE-STSSTTSTTCCCHHHHHHHHHHHH
T ss_pred EEEeeccccccccCCcchHHHHHHHHHHHH
Confidence 98653333211 1224466666555544
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.65 Score=52.25 Aligned_cols=80 Identities=15% Similarity=0.080 Sum_probs=53.1
Q ss_pred CcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-
Q 039518 200 THFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI- 274 (617)
Q Consensus 200 t~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~- 274 (617)
..|-+......+.+-+++.... .+.++..+||+-||||.++..+++.-- .+.|+++++..++.|+.+ |+
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~---~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~Ngis 431 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWA---GLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGIS 431 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHh---CCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCcc
Confidence 3454544444455555554332 234556699999999999999987633 567788999999888765 43
Q ss_pred CcEEEEecCCC
Q 039518 275 GAMISALSTKQ 285 (617)
Q Consensus 275 ~~~~~~~d~~~ 285 (617)
++.++++.+++
T Consensus 432 Na~Fi~gqaE~ 442 (534)
T KOG2187|consen 432 NATFIVGQAED 442 (534)
T ss_pred ceeeeecchhh
Confidence 46777764443
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.26 E-value=2 Score=46.61 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=65.5
Q ss_pred ccCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC-C-----CC-CCCCeeE
Q 039518 225 RSAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ-L-----PY-PSSSFEM 295 (617)
Q Consensus 225 r~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~-L-----pf-~d~sFDl 295 (617)
++.++.+||.+|||. |..+..+++. +.. .+..++.++...+.+++.+. +.+......+ + .+ ..+.+|+
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 345678899999987 7777777765 432 35666888888899888732 2222111111 1 11 2336999
Q ss_pred EEeccccc--------------ccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 296 VHCSRCRV--------------DWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 296 V~~s~~l~--------------h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|+-.-... +-..+....+.++.+.|+|+|.+++...
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 98642100 0112356689999999999999998763
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.86 Score=47.81 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=48.1
Q ss_pred EEEEecCCCC--CCCCCCeeEEEeccccc----------ccc-----cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC
Q 039518 277 MISALSTKQL--PYPSSSFEMVHCSRCRV----------DWH-----ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD 339 (617)
Q Consensus 277 ~~~~~d~~~L--pf~d~sFDlV~~s~~l~----------h~~-----~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~ 339 (617)
.+..+|...+ .+++++||+|++.--.. .+. +-....+.++.|+|||||.+++.... .
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~---~--- 83 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST---E--- 83 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc---h---
Confidence 4555554332 34678899999852110 000 11246889999999999999986421 1
Q ss_pred ChhhHHHHHHHHHHcCceEEEEeeeeEEEeecc
Q 039518 340 YPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEE 372 (617)
Q Consensus 340 ~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp~ 372 (617)
. .....++...+|... +..||.|+.
T Consensus 84 -~---~~~~~~~~~~~f~~~----~~iiW~k~~ 108 (284)
T PRK11524 84 -N---MPFIDLYCRKLFTIK----SRIVWSYDS 108 (284)
T ss_pred -h---hhHHHHHHhcCcceE----EEEEEEeCC
Confidence 0 012234445677643 456899864
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.2 Score=48.99 Aligned_cols=131 Identities=12% Similarity=0.145 Sum_probs=79.7
Q ss_pred ecCCCCCcccCChhHHHHHHHhhh----hhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH
Q 039518 194 WFPGGGTHFKHGAPEYIQRLGNMM----TNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA 269 (617)
Q Consensus 194 ~Fpgggt~F~~~a~~Y~~~L~~~L----~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A 269 (617)
.++..+..|.+-....-..|.=++ ..... +...+.+|||.=+|+|.=+...+..-..+..+...|+++++++..
T Consensus 13 ~~~~~~~vFYNP~~~~nRDlsvl~~~~~~~~~~--~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i 90 (377)
T PF02005_consen 13 TIPKKAPVFYNPVMEFNRDLSVLAIRYLAVLKE--KRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELI 90 (377)
T ss_dssp STTTTSSSS--GGGHHHHHHHHHH---HHHHHH--CH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHH
T ss_pred ecCCCCCcccCcchhcccceeehhHHHHHHhhh--hhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHH
Confidence 356667778777776655543332 11111 112234799999999987777766522344788899999999888
Q ss_pred HHh----CCCc---EEEEecCCCCC-CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 270 LER----GIGA---MISALSTKQLP-YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 270 ~er----g~~~---~~~~~d~~~Lp-f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++ ++.. .+...|+..+= ...+.||+|= +-++- .+..+|..+.+.++.||+|.++..
T Consensus 91 ~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID----lDPfG-Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 91 KRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID----LDPFG-SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE----E--SS---HHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHhHhhccccCceEEEehhhHHHHhhhccccCCEEE----eCCCC-CccHhHHHHHHHhhcCCEEEEecc
Confidence 775 4433 55555654432 2467899996 34554 678899999999999999999864
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.66 Score=48.15 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=53.3
Q ss_pred cCCCCCeeeEEeccccccchhhhccC---CCeEEEEeccCCCC-chhHHH---Hhh-cc--cccc-cccCCCCCCCCCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTLSAI---YNR-GI--LGAF-HDWCEPFSTYPRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l~~~---~~R-Gl--ig~~-~~~~~~f~typrty 530 (617)
.+..+ -+||||+||.|+++.+|.. ..--| +-.|.. .-+..+ ++| |+ +-++ +|- ..++.....|
T Consensus 68 ~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v---~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~f 141 (264)
T TIGR00446 68 EPDPP--ERVLDMAAAPGGKTTQISALMKNEGAI---VANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKF 141 (264)
T ss_pred CCCCc--CEEEEECCCchHHHHHHHHHcCCCCEE---EEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCC
Confidence 34555 4699999999999866532 22222 223433 333333 222 33 1122 221 1222222458
Q ss_pred chhhcccccccc----cc-CCC-CC---C-------hhhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHANHLFSHY----KN-RGE-VC---S-------LEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~~~~s~~----~~-~~~-~c---~-------~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.|=.+-=.|.. +. +.. +- . -..||-++=++|||||++|++
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 888644222210 00 000 00 0 125888899999999999998
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.88 E-value=2.3 Score=42.30 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=54.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEe-cCCCC--------CCCCCCeeE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISAL-STKQL--------PYPSSSFEM 295 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~-d~~~L--------pf~d~sFDl 295 (617)
+.++.+|||+||..|+|+.-..++ ++.. -+.++|+-. ..--.|. .+..+ |+.+- .+|+...|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g-~v~gVDllh----~~p~~Ga--~~i~~~dvtdp~~~~ki~e~lp~r~Vdv 139 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNG-MVLGVDLLH----IEPPEGA--TIIQGNDVTDPETYRKIFEALPNRPVDV 139 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCc-eEEEEeeee----ccCCCCc--ccccccccCCHHHHHHHHHhCCCCcccE
Confidence 467899999999999999988776 2322 233444321 1111121 22222 22110 135788999
Q ss_pred EEecccccccc----cchH-------HHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWH----ANDG-------ILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~----~d~~-------~~L~el~RvLrPGG~Liis~ 330 (617)
|++-. ...-. .|.. .++.-....++|+|.|+.-.
T Consensus 140 VlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 140 VLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 99642 22211 1111 23444556788999999854
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.4 Score=46.61 Aligned_cols=130 Identities=16% Similarity=0.293 Sum_probs=62.5
Q ss_pred chhhHHHHH--HHHHHhc-----cCCCCCeeeEEecccccc--chhhhcc-CCCeEEEEeccCCCCchhHHHHhh-----
Q 039518 446 DTSFWQDQV--RHYWQLM-----NVNETEIRNAMDMNAYCG--GFAVALN-SLPVWVMNIVPISMKNTLSAIYNR----- 510 (617)
Q Consensus 446 d~~~w~~~v--~~y~~~~-----~~~~~~~Rn~mDm~~~~g--~faa~l~-~~~v~vmnv~p~~~~~~l~~~~~R----- 510 (617)
....|...+ ..|.... .....+-++||+.|||.| |.+++.. ...-.|+.=.+. .-..+..-.++
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~ 95 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLL 95 (173)
T ss_dssp ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----
T ss_pred cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccc
Confidence 345675443 3455432 112233479999999888 7777777 222333332222 11223333333
Q ss_pred -c-ccccccccCCCCC--C-CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec------ChHHHHH
Q 039518 511 -G-ILGAFHDWCEPFS--T-YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD------EKSLITR 579 (617)
Q Consensus 511 -G-lig~~~~~~~~f~--t-yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d------~~~~~~~ 579 (617)
+ +--.-.+|.++.+ . -++.||+|-|+.++=. .=..+.++-=++++|.|+|-+++.. ...++++
T Consensus 96 ~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~------~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~ 169 (173)
T PF10294_consen 96 DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD------EELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDR 169 (173)
T ss_dssp ----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHH
T ss_pred cccccCcEEEecCcccccccccccCCEEEEecccch------HHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHH
Confidence 2 3445579988541 1 1478999998877641 1234566677899999999988852 2345555
Q ss_pred HHh
Q 039518 580 IRD 582 (617)
Q Consensus 580 ~~~ 582 (617)
+++
T Consensus 170 ~~k 172 (173)
T PF10294_consen 170 LKK 172 (173)
T ss_dssp H--
T ss_pred hhh
Confidence 543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=88.07 E-value=2.5 Score=39.61 Aligned_cols=68 Identities=10% Similarity=-0.050 Sum_probs=45.0
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEE--ecCCCCCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISA--LSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~--~d~~~Lpf~d~sFDlV~~ 298 (617)
+++|+|||++.|..+.+++-+|.. .|.+.+.++...+..++.-....+.. ....+.+-.-+.||+.+.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 446999999999999999988876 56677888988888877421111111 112234433456888763
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.69 E-value=2.1 Score=46.48 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=72.6
Q ss_pred HHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCC---cEEEeeecCCcHHHHHHHH---HhCCC--cEEEEec
Q 039518 211 QRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDI---QTMSFAPKDGHENQIQFAL---ERGIG--AMISALS 282 (617)
Q Consensus 211 ~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv---~~v~v~~iDis~~~lq~A~---erg~~--~~~~~~d 282 (617)
.....++|. --+.++++.+|||+.+..|+=++.|++... .---+.+.|++...+.... .+-.. ..+...+
T Consensus 140 qeavSmlPv--L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~ 217 (375)
T KOG2198|consen 140 QEAVSMLPV--LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHD 217 (375)
T ss_pred hhhhhccch--hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeeccc
Confidence 344555543 235678999999999999998888876522 1113567788877654433 22211 2222223
Q ss_pred CCCCC---------CCCCCeeEEEec-ccccc-------------ccc--------chHHHHHHHHHhccCCeEEEEEeC
Q 039518 283 TKQLP---------YPSSSFEMVHCS-RCRVD-------------WHA--------NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 283 ~~~Lp---------f~d~sFDlV~~s-~~l~h-------------~~~--------d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+...| .....||-|+|- -|... |.. -.-.+|..-.++||+||.++.|+-
T Consensus 218 ~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 218 ASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred ceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 22222 233469999862 11100 110 012468899999999999999986
Q ss_pred CCCCC
Q 039518 332 PAYRK 336 (617)
Q Consensus 332 ~~~~~ 336 (617)
..+..
T Consensus 298 SLnpi 302 (375)
T KOG2198|consen 298 SLNPI 302 (375)
T ss_pred CCCch
Confidence 55443
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=87.62 E-value=0.93 Score=50.85 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=70.1
Q ss_pred ccCccccccchhhHHH---HHHHHHHhccCCCCC----eeeEEeccccccchhh------hccCCCeEEEEeccCCCC-c
Q 039518 437 GITQEEFTTDTSFWQD---QVRHYWQLMNVNETE----IRNAMDMNAYCGGFAV------ALNSLPVWVMNIVPISMK-N 502 (617)
Q Consensus 437 ~~~~~~f~~d~~~w~~---~v~~y~~~~~~~~~~----~Rn~mDm~~~~g~faa------~l~~~~v~vmnv~p~~~~-~ 502 (617)
..+-|.|++|.-++.. .+.....-. ....+ --+|||+|||.|-... +-....+=|-.|--.... -
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~~al~D~-~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~ 228 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIEEALKDR-VRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVV 228 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHHH-HTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHH
T ss_pred cccHhhHhcCHHHHHHHHHHHHHHHHhh-hhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHH
Confidence 4578999999876643 222211111 23332 3569999999998841 122233333333211111 3
Q ss_pred hhHH-HHhhcc---cccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe-------
Q 039518 503 TLSA-IYNRGI---LGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR------- 571 (617)
Q Consensus 503 ~l~~-~~~RGl---ig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~------- 571 (617)
+|+- |-+.|+ |=++|.=-+.+.. |--.|+|=.--+-|. ...-.+..+|.-.||.|+|+|..|=+
T Consensus 229 ~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVSElLGsf----g~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~yla 303 (448)
T PF05185_consen 229 TLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVSELLGSF----GDNELSPECLDAADRFLKPDGIMIPSSYTSYLA 303 (448)
T ss_dssp HHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE---BTT----BTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEE
T ss_pred HHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEEeccCCc----cccccCHHHHHHHHhhcCCCCEEeCcchhhEEE
Confidence 4432 244453 5555544444443 556676653222221 11224556788999999999988732
Q ss_pred --cChHHHHHHHhh
Q 039518 572 --DEKSLITRIRDL 583 (617)
Q Consensus 572 --d~~~~~~~~~~~ 583 (617)
......+++...
T Consensus 304 Piss~~l~~~~~~~ 317 (448)
T PF05185_consen 304 PISSPKLYQEVRNW 317 (448)
T ss_dssp EEE-HHHHHHHHHH
T ss_pred EeeCHHHHHHHHhh
Confidence 334556666543
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=86.98 E-value=3.5 Score=46.05 Aligned_cols=133 Identities=11% Similarity=0.153 Sum_probs=70.0
Q ss_pred cCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccc---ccccccCCCCCC--C-CCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGIL---GAFHDWCEPFST--Y-PRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGli---g~~~~~~~~f~t--y-prty 530 (617)
.+..+ ..|||+|||.|.|+.+|...-- .|+-.|.. ..+..+-+ .|+- =+-.|+-+.+.. + +.+|
T Consensus 294 ~~~~~--~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 294 DPQPG--DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred cCCCC--CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence 34444 4799999999999999976642 34444554 44444332 2321 112233222222 2 2568
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChHH-HHHHHhhhhcCCceEEEe---eccccCCCceeE
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSL-ITRIRDLAPKFLWDVELH---SLENREKKMESV 606 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~-~~~~~~~~~~~~W~~~~~---~~e~~~~~~~~~ 606 (617)
|+|-++ ..|-.+..++-.+-+ |.|++.++++=++.. -..++.+.+ --|++... |.=+.+..=|-|
T Consensus 369 D~Vi~d---------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v 437 (443)
T PRK13168 369 DKVLLD---------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESM 437 (443)
T ss_pred CEEEEC---------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEE
Confidence 887522 344444555544444 589999999955544 344555533 23655333 332233333555
Q ss_pred EEEE
Q 039518 607 LICR 610 (617)
Q Consensus 607 l~~~ 610 (617)
.+..
T Consensus 438 ~lL~ 441 (443)
T PRK13168 438 ALFE 441 (443)
T ss_pred EEEE
Confidence 4443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=86.65 E-value=1.1 Score=49.99 Aligned_cols=35 Identities=9% Similarity=0.331 Sum_probs=24.4
Q ss_pred hhHHhhhhhcccCCceEEEec----ChHHHHHHHhhhhc
Q 039518 552 EDIMLEMDLIIRPQGFIIIRD----EKSLITRIRDLAPK 586 (617)
Q Consensus 552 ~~~l~e~dRilRP~G~~i~~d----~~~~~~~~~~~~~~ 586 (617)
..+|-++=|+|||||.+|++. ..+-...|+.+++.
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 478999999999999999872 22334455555543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=2.6 Score=44.80 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=57.6
Q ss_pred CCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEe--cCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISAL--STKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~--d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
++.+||=+|+| .|..+..+++. |.. .+...|.++..++.+++.|....+... +..++....+.||+|+-.-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~--- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAA--EIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS--- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC---
Confidence 57789988875 23444444443 442 345567888888999887754322111 1111111123589987431
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.....+....++|++||.+++.+.
T Consensus 244 ----G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 ----GHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 112467888999999999998764
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=86.61 E-value=1.6 Score=47.67 Aligned_cols=107 Identities=9% Similarity=0.071 Sum_probs=56.4
Q ss_pred CCCeeeEEeccccccchhhhccCCC-eEEEEeccCCCCchhHHHHh--------hc-c-----cccccccCCCCCCCCCc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMKNTLSAIYN--------RG-I-----LGAFHDWCEPFSTYPRT 529 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~~~l~~~~~--------RG-l-----ig~~~~~~~~f~typrt 529 (617)
-..-++||++|+|.|+.+..+++.+ +--+-+|-.|. .-+.++-+ +| + --+..|-.+-...-++.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 3456899999999999888887764 32222233332 33333332 11 1 00111111111222467
Q ss_pred cchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 530 YDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 530 yDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
||+|=.+- +........+---...+-.+-|.|+|||.++....
T Consensus 227 YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 89887662 11000000111113567789999999999988743
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.9 Score=45.08 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=52.9
Q ss_pred CeEEEECCCCc--HHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh---CCC--cEEEEecCCCCC----------C--C
Q 039518 230 FQVLDVGCGVA--SFSAFLLPL-DIQTMSFAPKDGHENQIQFALER---GIG--AMISALSTKQLP----------Y--P 289 (617)
Q Consensus 230 ~rVLDIGCGtG--~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er---g~~--~~~~~~d~~~Lp----------f--~ 289 (617)
...||||||-- ...-..+++ ... ..|.-+|.++..+..++.. ... ..+..+|+.+.. + .
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~-aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPD-ARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT--EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCC-ceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 34999999954 233444433 222 2455568888887755543 223 567777754321 0 1
Q ss_pred CCCeeEEEecccccccc--cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 SSSFEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++..=+++ ..++++.. +++..++..+...|.||.+|+|+..
T Consensus 149 ~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 DRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 34444444 33455554 3688999999999999999999964
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=86.51 E-value=0.53 Score=45.02 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=34.8
Q ss_pred CCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 520 CEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 520 ~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.+.++.-+.+||+|=+...+..+ -+....|-||-|+|+|||.+++-|-
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~------~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNV------VDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcC------CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 34455324799999766555433 2456889999999999999998754
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.25 E-value=3.3 Score=42.26 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=76.4
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHHhhcccc--cccccCCCCCCCCCccch
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIYNRGILG--AFHDWCEPFSTYPRTYDL 532 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~~RGlig--~~~~~~~~f~typrtyDl 532 (617)
=..+|.+..+.=+-|||+|||.|--++.|.+..- |+ =.|.. .-|.++.||-+=| ++.|.-|.+|+=|-|||=
T Consensus 40 aLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wi----GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 40 ALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWI----GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEE----eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 3455667777788999999999999988887763 43 23433 7788888865432 456777999988999996
Q ss_pred hhccccccccccCCCCCCh------h-----hHHhhhhhcccCCceEEEe---cChHHHHHHHhhh
Q 039518 533 LHANHLFSHYKNRGEVCSL------E-----DIMLEMDLIIRPQGFIIIR---DEKSLITRIRDLA 584 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~------~-----~~l~e~dRilRP~G~~i~~---d~~~~~~~~~~~~ 584 (617)
+-.-+-. +.-|+- . ...--+-..|.+|+-.+++ ++.+.++.|..-|
T Consensus 116 ~ISISAv------QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a 175 (270)
T KOG1541|consen 116 VISISAV------QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQA 175 (270)
T ss_pred EEEeeee------eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHH
Confidence 4322111 222322 1 2233466889999999998 4444444444433
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=86.15 E-value=4 Score=42.55 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=60.2
Q ss_pred cCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-----CCCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-----PYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-----pf~d~sFDlV~~ 298 (617)
+.++.+||..|+| .|..+..+++. |.. +..++.++...+.+++.|....+...+ ... ....+.+|+|+.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~---V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAA---VIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCE---EEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEE
Confidence 4566789988876 46666666664 543 455577888888887777532221111 010 123457999884
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.. .....+.++.+.|+++|.++..+
T Consensus 239 ~~-------g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 239 FV-------GTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CC-------CCHHHHHHHHHHhhcCCEEEEEC
Confidence 31 12457889999999999999865
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.10 E-value=2.1 Score=48.40 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=69.6
Q ss_pred CeEEEECCCCcHHHHHhccC---CCcEEEeeecCCcHHHHHHHHHh-----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 230 FQVLDVGCGVASFSAFLLPL---DIQTMSFAPKDGHENQIQFALER-----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~---gv~~v~v~~iDis~~~lq~A~er-----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
-.|+-+|+|-|-+....++. --..+.+.+++-+++++-..+.+ ...+++...|+..++.|..+.|++++ ..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-EL 447 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-EL 447 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-Hh
Confidence 35889999999665444321 11345777788888877655544 34578888899988866688999985 34
Q ss_pred ccccccc--hHHHHHHHHHhccCCeEEEEE
Q 039518 302 RVDWHAN--DGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 302 l~h~~~d--~~~~L~el~RvLrPGG~Liis 329 (617)
+-.+.++ -.+.|.-+-+.|||+|..+=+
T Consensus 448 LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 5555432 357899999999999876654
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.80 E-value=2.1 Score=45.35 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=69.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---------CCCcEEEEecCCCC--CCCCCCeeE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---------GIGAMISALSTKQL--PYPSSSFEM 295 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---------g~~~~~~~~d~~~L--pf~d~sFDl 295 (617)
...++||-||-|.|.+......+ ..+-.+.-.|+.+..++..++. +..+.+..+|...+ ....++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34567999999999988777766 3444666678888887777654 44566777763222 124789999
Q ss_pred EEeccccccccc----chHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+.-- -....+ -...+...+.+.||+||+++...
T Consensus 199 ii~ds-sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDS-SDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEec-CCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 98531 111110 12457888999999999999975
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=0.93 Score=50.54 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=63.5
Q ss_pred cccchhhHHHHHHHHHH-hccCCCCCeeeEEeccccccchhhhccC---CCeEEEEeccCCCC-chhHHHHh---h-ccc
Q 039518 443 FTTDTSFWQDQVRHYWQ-LMNVNETEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTLSAIYN---R-GIL 513 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~-~~~~~~~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l~~~~~---R-Gli 513 (617)
|++..-.+++..+.... .+++..| .+||||+||.||.+.++.. ..--| +-.|-. +-|..+-+ | |+-
T Consensus 214 ~~~G~~~~Qd~~s~~~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V---~a~Dis~~rl~~~~~n~~r~g~~ 288 (431)
T PRK14903 214 IKDGLATVQGESSQIVPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKI---LAVDISREKIQLVEKHAKRLKLS 288 (431)
T ss_pred HHCCeEEEECHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEE---EEEECCHHHHHHHHHHHHHcCCC
Confidence 44443344444444433 3345566 4799999999998766643 22222 223444 44444432 2 441
Q ss_pred ---ccccccCCCCCCC-CCccchhhccccccccccCCC------CC---C-------hhhHHhhhhhcccCCceEEEe
Q 039518 514 ---GAFHDWCEPFSTY-PRTYDLLHANHLFSHYKNRGE------VC---S-------LEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 514 ---g~~~~~~~~f~ty-prtyDl~H~~~~~s~~~~~~~------~c---~-------~~~~l~e~dRilRP~G~~i~~ 571 (617)
-+.+|... ++.+ +..||.|=++---|..-.... +- . -..||-+.=+.|+|||.++++
T Consensus 289 ~v~~~~~Da~~-l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 289 SIEIKIADAER-LTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred eEEEEECchhh-hhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 12233332 2212 367898865422221100000 00 0 125688889999999999997
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=85.66 E-value=0.49 Score=42.89 Aligned_cols=38 Identities=16% Similarity=0.548 Sum_probs=27.1
Q ss_pred CeeEEEecccccccc------cchHHHHHHHHHhccCCeEEEEEe
Q 039518 292 SFEMVHCSRCRVDWH------ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 292 sFDlV~~s~~l~h~~------~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.||+|+|..+. -|. +-...+++.+++.|+|||.|++.-
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999986433 232 123568999999999999999953
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=84.93 E-value=3.6 Score=43.88 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=58.1
Q ss_pred cCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC--CCCCCCeeEEEeccc
Q 039518 226 SAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL--PYPSSSFEMVHCSRC 301 (617)
Q Consensus 226 ~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L--pf~d~sFDlV~~s~~ 301 (617)
..++.+||=+|+|. |.++..+++. +..++.++..+.++...+.+++.|... + ....+++ ....+.||+|+-.-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~-v-~~~~~~~~~~~~~~~~d~vid~~- 246 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY-V-NSSKTPVAEVKLVGEFDLIIEAT- 246 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE-e-cCCccchhhhhhcCCCCEEEECc-
Confidence 34677899998763 4555555543 554444444445777888888877542 1 1111110 00124589888431
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.....+.+..++|++||.+++.+.
T Consensus 247 ------g~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 247 ------GVPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ------CCHHHHHHHHHHccCCcEEEEEec
Confidence 112478889999999999988653
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.3 Score=44.61 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=18.6
Q ss_pred hHHhhhhhcccCCceEEEecCh
Q 039518 553 DIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 553 ~~l~e~dRilRP~G~~i~~d~~ 574 (617)
.+|.|.-=+||+||.++.--++
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeH
Confidence 6888999999999999876544
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=84.24 E-value=10 Score=41.53 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=65.0
Q ss_pred eEEEECCCCc----HHHHHhccC--CCcEEEeeecCC----cHHHHHHH--------HHhCCCcEEEEe---cCCCC---
Q 039518 231 QVLDVGCGVA----SFSAFLLPL--DIQTMSFAPKDG----HENQIQFA--------LERGIGAMISAL---STKQL--- 286 (617)
Q Consensus 231 rVLDIGCGtG----~~a~~La~~--gv~~v~v~~iDi----s~~~lq~A--------~erg~~~~~~~~---d~~~L--- 286 (617)
.|+|+|.|.| .+...|+.+ ++..+.||+++. +...++.+ +..|++..+... ..+.+
T Consensus 113 HIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~ 192 (374)
T PF03514_consen 113 HIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPS 192 (374)
T ss_pred EEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHH
Confidence 5999999999 445555555 556778999888 55555444 444888777663 22222
Q ss_pred --CCCCCCeeEEEeccccccccc------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCC
Q 039518 287 --PYPSSSFEMVHCSRCRVDWHA------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD 339 (617)
Q Consensus 287 --pf~d~sFDlV~~s~~l~h~~~------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~ 339 (617)
...++..=+|.|...+++..+ ++...+....|-|+|.-.. ++....+...+.
T Consensus 193 ~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv-~~E~ea~~n~~~ 252 (374)
T PF03514_consen 193 MLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV-LVEQEADHNSPS 252 (374)
T ss_pred HhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE-EEeecCCCCCCc
Confidence 223343444555555566542 2445677788899999444 444444444443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=84.07 E-value=5.7 Score=39.24 Aligned_cols=137 Identities=15% Similarity=0.288 Sum_probs=78.8
Q ss_pred cchhhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhh---hccCCCeEEEEeccCCCC-chhH-HHHhhcc--cccc
Q 039518 445 TDTSFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAV---ALNSLPVWVMNIVPISMK-NTLS-AIYNRGI--LGAF 516 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa---~l~~~~v~vmnv~p~~~~-~~l~-~~~~RGl--ig~~ 516 (617)
...+.|.+++-.=...+. +..... +++|+|+| |||=+ |+...+.=+.=|-+..-. +-|. ++-+=|| +-++
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSG-aGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPDFGK-KVLDIGSG-AGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETST-TTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCC-CCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 345778776655444444 333333 69999999 44532 222233222223333322 3333 3455566 5577
Q ss_pred cccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe---cChHHHHHHHhhhhcCCceEEE
Q 039518 517 HDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR---DEKSLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 517 ~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~---d~~~~~~~~~~~~~~~~W~~~~ 593 (617)
|..-|. ..++..||+|=|-- -.++..++--+-+.|+|||.++.- +..+++++.++-.+.+.++...
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRA----------v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARA----------VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEES----------SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred Eeeecc-cccCCCccEEEeeh----------hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 777777 56789999987322 234556666678899999999885 4456666777777777777655
Q ss_pred e
Q 039518 594 H 594 (617)
Q Consensus 594 ~ 594 (617)
.
T Consensus 173 v 173 (184)
T PF02527_consen 173 V 173 (184)
T ss_dssp E
T ss_pred e
Confidence 4
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=83.36 E-value=6.3 Score=45.00 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=64.2
Q ss_pred cCCCCeEEEECCCCcH-HHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC-----------CC-----
Q 039518 226 SAGVFQVLDVGCGVAS-FSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ-----------LP----- 287 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~-~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~-----------Lp----- 287 (617)
..++.+||=+|+|.-. .+...++. |. .+...|.+++.++.+++.|... ...+..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~~--v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAEF--LELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeE--EEeccccccccccchhhhcchhHHH
Confidence 4578999999999754 44444443 54 4777899999999999877542 2111110 10
Q ss_pred -----CCC--CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 288 -----YPS--SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 288 -----f~d--~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.+ +.+|+|+..- ...-...+....+++.+.+||||.++...-
T Consensus 237 ~~~~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3599999653 222222344446999999999999988753
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.39 E-value=2.6 Score=43.42 Aligned_cols=129 Identities=15% Similarity=0.249 Sum_probs=72.6
Q ss_pred cccCccccccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccC--CC--eEEEEeccCCCCchhHHHHhhc
Q 039518 436 IGITQEEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS--LP--VWVMNIVPISMKNTLSAIYNRG 511 (617)
Q Consensus 436 ~~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~--~~--v~vmnv~p~~~~~~l~~~~~RG 511 (617)
.+...+.|-.| ++|-. ...-.++++....--++|.+|||.|.-.==|+. .+ +-||.. + -+++-+.+.-++-
T Consensus 43 y~~~~~rFfkd-R~wL~--~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ac-D-fsp~Ai~~vk~~~ 117 (264)
T KOG2361|consen 43 YKIHENRFFKD-RNWLL--REFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYAC-D-FSPRAIELVKKSS 117 (264)
T ss_pred hhhccccccch-hHHHH--HhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEc-C-CChHHHHHHHhcc
Confidence 34455555444 44433 122233333332222899999999976544431 22 444432 1 1113332222221
Q ss_pred ------ccccccccCCCC---CCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 512 ------ILGAFHDWCEPF---STYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 512 ------lig~~~~~~~~f---~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.-...+|-+.+= +--+-+.|.|-+-.++|- .+.=.+...+-.+-|+|+|||.+++||=
T Consensus 118 ~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSA----i~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 118 GYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSA----IHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred ccchhhhcccceeccchhccCCCCcCccceEEEEEEEec----cChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 223344444332 112489999999999985 3344577899999999999999999963
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.15 E-value=1.7 Score=49.67 Aligned_cols=123 Identities=8% Similarity=0.032 Sum_probs=62.6
Q ss_pred CeeeEEeccccccchhhhccCCC-eEEEEeccCCCCchhHHHHhh-cc------------ccc-ccccCCCCCCCCCccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMKNTLSAIYNR-GI------------LGA-FHDWCEPFSTYPRTYD 531 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~~~l~~~~~R-Gl------------ig~-~~~~~~~f~typrtyD 531 (617)
+-++|||+|||.|+.+..+.+.+ +=.+-+|=.|. .-+..+-+. .+ +-+ ..|=-+-....++.||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~-~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP-AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH-HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45789999999999998776654 21111222221 233333221 11 001 1111111223468899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-----ChHHHHHHHhhhhcCCceE
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-----EKSLITRIRDLAPKFLWDV 591 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~~ 591 (617)
+|-.+- ...+.....+=--+.++-++=|+|+|||.+++.. ..+...++.+..+.....+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 998662 2111000000001245667889999999999952 2445555666555553433
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.14 E-value=0.75 Score=48.25 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=52.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHH------------HHHH---hCCCcEEEEecCCCCCC-CCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQ------------FALE---RGIGAMISALSTKQLPY-PSS 291 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq------------~A~e---rg~~~~~~~~d~~~Lpf-~d~ 291 (617)
.+++|||+|||.|.-+......+. ..+...|.+...++ ...+ ......+..-...+.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 466799999999988877766552 13333444444431 1100 00000111100001111 112
Q ss_pred --CeeEEEecccccccccchHHH-HHHHHHhccCCeEEEEEeC
Q 039518 292 --SFEMVHCSRCRVDWHANDGIL-LKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 292 --sFDlV~~s~~l~h~~~d~~~~-L~el~RvLrPGG~Liis~p 331 (617)
.||+|.++....... ....+ +.....+++++|.+++..-
T Consensus 194 ~~~ydlIlsSetiy~~~-~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID-SLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred ccchhhhhhhhhhhCcc-hhhhhHhhhhhhcCCccchhhhhhH
Confidence 688888776544433 22333 6677788899998888653
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=81.87 E-value=3 Score=46.69 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=53.3
Q ss_pred cCCCCCeeeEEeccccccchhhhccC---CCeEEEEeccCCCC-chhHHH---Hh-hcc--c-ccccccCCCCCCCCCcc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTLSAI---YN-RGI--L-GAFHDWCEPFSTYPRTY 530 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l~~~---~~-RGl--i-g~~~~~~~~f~typrty 530 (617)
.+..| ..|||++||.|+++.+|.+ ..--|..+ |.. .-+..+ .+ .|+ | -+.+|.....+ +.+|
T Consensus 247 ~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~~V~av---D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~--~~~f 319 (445)
T PRK14904 247 NPQPG--STVLDLCAAPGGKSTFMAELMQNRGQITAV---DRYPQKLEKIRSHASALGITIIETIEGDARSFSP--EEQP 319 (445)
T ss_pred CCCCC--CEEEEECCCCCHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--CCCC
Confidence 34445 5799999999998765542 22222222 333 333222 22 343 1 12233322211 2579
Q ss_pred chhhcc------ccccc-----cccCCCCCCh-------hhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHAN------HLFSH-----YKNRGEVCSL-------EDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~------~~~s~-----~~~~~~~c~~-------~~~l~e~dRilRP~G~~i~~ 571 (617)
|.|=.+ |.+.. |. ...-.+ ..+|-++=|+|||||.+++.
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~--~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWK--LTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhc--CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 988643 22210 10 000111 25899999999999999998
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.53 E-value=2.3 Score=46.92 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=64.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccc-c---cc-cccCCCCCCC---CCccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGIL-G---AF-HDWCEPFSTY---PRTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGli-g---~~-~~~~~~f~ty---prtyDl~H~ 535 (617)
++|||++||+|+|+-+.....-- .|+-+|.. .-+..+-+ -|+- . ++ .|..+.+..+ .++||+|=+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 68999999999998553333220 12223333 33332211 1331 1 11 1222222122 247899876
Q ss_pred cccccccccCCCC-------CChhhHHhhhhhcccCCceEEEe------cChHHHHHHHhhhhcCCceEEEe
Q 039518 536 NHLFSHYKNRGEV-------CSLEDIMLEMDLIIRPQGFIIIR------DEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 536 ~~~~s~~~~~~~~-------c~~~~~l~e~dRilRP~G~~i~~------d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
+--+-. .++ ....+++.-.-++|+|||.++.. +..+..+-+.+-+..-..++++.
T Consensus 300 DPP~f~----~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 300 DPPKFV----ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred CCCCCC----CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 633210 111 23445666677999999999984 23456666666666666666655
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=81.36 E-value=1.9 Score=46.13 Aligned_cols=94 Identities=12% Similarity=0.221 Sum_probs=53.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc-c------cccccc-CCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI-L------GAFHDW-CEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl-i------g~~~~~-~~~f~typrtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++..|..... +|+-.|-. +-|.++-+|.- . +.-.++ +..+...+.+||+|=+..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 4799999999999999987653 34444555 66666655521 0 011111 11122335889998777777
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+| ... .+..++-.+-++ .+||. ||.
T Consensus 223 ~H~---p~~-~~~~ll~~l~~l-~~g~l-iIs 248 (315)
T PLN02585 223 IHY---PQD-KADGMIAHLASL-AEKRL-IIS 248 (315)
T ss_pred Eec---CHH-HHHHHHHHHHhh-cCCEE-EEE
Confidence 665 221 122344455553 45555 444
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=80.87 E-value=1.3 Score=47.39 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCeeeEEeccccccchhhhccCCC-eEEEEeccCCCCchhHHHHh------hcc----cc-cccccCCCCCCC-CCccch
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMKNTLSAIYN------RGI----LG-AFHDWCEPFSTY-PRTYDL 532 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~~~l~~~~~------RGl----ig-~~~~~~~~f~ty-prtyDl 532 (617)
..-++|||+|+|.|+.+..+.+.| |.-+-+|=.|.. -+.++-+ .|+ +- +..|=-+-.... ++.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~-Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM-VIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 447899999999999999998765 433323332221 1111111 011 00 111100001223 368999
Q ss_pred hhccccccccccCCCCC--ChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANHLFSHYKNRGEVC--SLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c--~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|-.+. +... ...- --..++-.+-|.|+|||.++..
T Consensus 169 Ii~D~-~dp~---~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPV---GPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCC---CchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 97543 2211 1000 0135677889999999999874
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.70 E-value=6.4 Score=42.33 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=64.7
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC---------CCCCCeeEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP---------YPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp---------f~d~sFDlV 296 (617)
...|.+||-+|+|.=.+...+..+..-+.++..+|+++..++.|++-|..+........... +....||+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 46788999999996544444444433344778889999999999998765544332211111 222448888
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+-.. -.+..++.....+|+||.+++.+
T Consensus 247 ~dCs-------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 247 FDCS-------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred EEcc-------CchHHHHHHHHHhccCCEEEEec
Confidence 7321 23446777788999999988875
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.43 E-value=2.5 Score=41.90 Aligned_cols=107 Identities=13% Similarity=0.216 Sum_probs=60.6
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC----chhHHHHhh-cccc----cccccCCCCCCCCCccchhhcccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK----NTLSAIYNR-GILG----AFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~----~~l~~~~~R-Glig----~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
+|||.|||-|.+--.|.+...-- -.+-+|=. .--+-|.|| |+-- .-.|.-.+ ...+.-||+||--|-+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 89999999999988887654210 01111111 122334444 3321 01111111 22457899999777776
Q ss_pred ccccCCCCCC------hhhHHhhhhhcccCCceEEEecChHHHHHHHh
Q 039518 541 HYKNRGEVCS------LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRD 582 (617)
Q Consensus 541 ~~~~~~~~c~------~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~ 582 (617)
.. +-|. +..++==++++|+|||.|+|..=.-..+++.+
T Consensus 148 Ai----sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~ 191 (227)
T KOG1271|consen 148 AI----SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVE 191 (227)
T ss_pred ee----ecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHH
Confidence 42 2232 24567778999999999999854433334333
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.15 E-value=2.1 Score=43.75 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=69.2
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCC--CchhHHHHhhcc--cccc-cccCCCCCCCC-C-ccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISM--KNTLSAIYNRGI--LGAF-HDWCEPFSTYP-R-TYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~--~~~l~~~~~RGl--ig~~-~~~~~~f~typ-r-tyDl~H~~~~~ 539 (617)
..++++|||.|.|-+.|..+ .+-..-|-.... -.-+.-|-+.|| |-++ +|=-+-+..++ . +.|-|+ =.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~--i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY--INF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE--EEC
Confidence 47899999999999998532 232223322222 255666778887 4444 22222233333 3 777776 233
Q ss_pred c-ccc---cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHH-HHhhhhc
Q 039518 540 S-HYK---NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITR-IRDLAPK 586 (617)
Q Consensus 540 s-~~~---~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~-~~~~~~~ 586 (617)
. -|- ..+.|=--...|-++-|+|+|||.+-+. |..+..+. +......
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 3 121 1234433457888999999999999997 66655555 5544433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 617 | ||||
| 2avn_A | 260 | Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYN | 7e-05 | ||
| 3l8d_A | 242 | Crystal Structure Of Methyltransferase From Bacillu | 8e-05 |
| >pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS Methyltransferase-Related Protein (Tm1389) From Thermotoga Maritima Msb8 At 2.35 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-10 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 9e-09 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 1e-08 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 2e-08 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-08 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 4e-08 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-08 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 4e-08 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 5e-08 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 1e-07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 2e-07 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 4e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 1e-06 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 1e-06 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 2e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 3e-06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 4e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 5e-06 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 7e-06 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 8e-06 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 9e-06 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 9e-06 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 1e-05 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 2e-05 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 4e-05 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 5e-05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 5e-05 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 5e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 8e-05 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 8e-05 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 9e-05 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 4e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 5e-04 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 5e-04 |
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 30/132 (22%)
Query: 232 VLDVGCGVASFSAFLLP-------LDIQTMSFAPKDGHENQIQFALERGIGAMIS----- 279
VLDVGCG + L +DI S E IQ ERG G +S
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGVDI---S-------EVMIQKGKERGEGPDLSFIKGD 106
Query: 280 ALSTKQLPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYS--APPAYRK 336
LP+ + FE + + L E+ RVL+ +GY + P A +
Sbjct: 107 LS---SLPFENEQFEAIMAIN--SLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPR 161
Query: 337 DKDYPLIWDKLV 348
+ YP ++ K V
Sbjct: 162 ENSYPRLYGKDV 173
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 9e-09
Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 32/140 (22%)
Query: 204 HGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPK---- 259
G+PE ++ + + T + + + D+GCG + FL A
Sbjct: 28 PGSPEATRKAVSFINELTDDAK------IADIGCGTGGQTLFL----------ADYVKGQ 71
Query: 260 ----DGHENQIQFALER----GIGAMISAL--STKQLPYPSSSFEMVHCSRCRVDWHAND 309
D + I+ E + + S LP+ + +++ ++
Sbjct: 72 ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG--AIYNIGF 129
Query: 310 GILLKEVDRVLRPNGYFVYS 329
+ E + L+ G+ S
Sbjct: 130 ERGMNEWSKYLKKGGFIAVS 149
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 26/112 (23%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPK--------DGHENQIQFALER----GIGAMIS 279
+ D+GCG QTM A D I G+ ++
Sbjct: 50 IADIGCGTG----------GQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVT 99
Query: 280 AL--STKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329
+ S LP+ + +++ ++ L E + L+ GY S
Sbjct: 100 GIVGSMDDLPFRNEELDLIWSEG--AIYNIGFERGLNEWRKYLKKGGYLAVS 149
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-08
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ----LP 287
VLD+ CGV FS L + + D E+ I+ A E + L
Sbjct: 42 VLDLACGVGGFSFLLEDYGFEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDARKLS 98
Query: 288 YPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFV 327
+ +F+ V V + + + KEV RVL+P+G F+
Sbjct: 99 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 14/133 (10%)
Query: 206 APEYIQRLGNMMTNETGNLRSAGVF------QVLDVGCGVASFSAFLLPLDIQTMSFAPK 259
+ LG +++ E + + +LDVG G ++ L L Q
Sbjct: 13 TFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGL--- 69
Query: 260 DGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGIL---LKEV 316
+ ++ A + + L + + H G L L +
Sbjct: 70 EPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLA--WYSLIHMGPGELPDALVAL 127
Query: 317 DRVLRPNGYFVYS 329
+ G + S
Sbjct: 128 RMAVEDGGGLLMS 140
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 22/129 (17%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPK----DGHENQIQFALERGIGAMISAL--STKQ 285
++D+GCG F + A D E + A G I+ +
Sbjct: 47 IVDLGCGFGWFCRWAHEH------GASYVLGLDLSEKMLARARAAGPDTGITYERADLDK 100
Query: 286 LPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS---------APPAYRK 336
L P SF++ + S + + + L + V + L P G+FV+S A P +
Sbjct: 101 LHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAI 159
Query: 337 DKDYPLIWD 345
D + W
Sbjct: 160 DAEGRRTWP 168
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 9/118 (7%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMIS---ALSTKQLPY 288
VLD+GCG L I+ + DG + A G G + A +
Sbjct: 56 VLDLGCGEGWLLRALADRGIEAVGV---DGDRTLVDAARAAGAGEVHLASYAQLAEAKVP 112
Query: 289 PSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP-PAYRKDKDYPLIWD 345
++++ + H + LL + +L P G V P D DY W
Sbjct: 113 VGKDYDLICANF--ALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWR 168
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 4e-08
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPK-----DGHENQIQFALERGIGAMIS--ALSTK 284
VLD+GCG + K D E + A + ++ + +
Sbjct: 48 VLDLGCGFGWHCIYA-------AEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIE 100
Query: 285 QLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329
+ ++ +V S + + A+ + K+V L+ +G F++S
Sbjct: 101 DIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
VLD+G G +S FL + + D + ++ A E+G+ ++ A + LP+PS
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVVLV---DPSKEMLEVAREKGVKNVVEAKAED-LPFPSG 113
Query: 292 SFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAPPAY 334
+FE V + V + + E+ RVL P+G + + Y
Sbjct: 114 AFEAV-LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 23/104 (22%)
Query: 232 VLDVGCGVASFSAFLLP-------LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTK 284
++D GCG + +LL +DI ++ E+ + +
Sbjct: 21 IVDYGCGNGFYCKYLLEFATKLYCIDIN----------VIALKEVKEKFDSVITLS---D 67
Query: 285 QLPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFV 327
P +S + + + +D ++ EV R+L+ +G +
Sbjct: 68 PKEIPDNSVDFILFAN--SFHDMDDKQHVISEVKRILKDDGRVI 109
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 31/138 (22%)
Query: 206 APEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGH--- 262
+ R + VLD G G + F
Sbjct: 7 RQPQLYRFLKYCNESNLDKT------VLDCGAGGDLPPLSI---------FVEDGYKTYG 51
Query: 263 ----ENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH---ANDGI 311
+ Q++ A IS ++LP+ S V+ +H +
Sbjct: 52 IEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYS--YGTIFHMRKNDVKE 109
Query: 312 LLKEVDRVLRPNGYFVYS 329
+ E+ RVL+P G +
Sbjct: 110 AIDEIKRVLKPGGLACIN 127
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-07
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 21/108 (19%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPK------DGHENQIQFALERGIGAMISALSTKQ 285
VL+ GCG+ + + L P D ++ A E I + Q
Sbjct: 41 VLEAGCGIGAQTVILAKN-------NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQ 93
Query: 286 -----LPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFV 327
LP+ SSF+ + C V H LK + +VL+P G
Sbjct: 94 ANIFSLPFEDSSFDHIFV--CFVLEHLQSPEEALKSLKKVLKPGGTIT 139
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 7e-07
Identities = 70/503 (13%), Positives = 143/503 (28%), Gaps = 132/503 (26%)
Query: 107 EYIPCHDPSY-VKKLLPSLDLSRKEELERHCPPLEKRLFCLVPPP--------------- 150
YI D Y ++ ++SR + + L + L L P
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLK----LRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 151 -----KDYKI------PIRWPTSRDYVWQSNVNHTRLAEVKGGQN-WVHEKGQLWWFPGG 198
YK+ I W + N T L + Q
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLK----NCNSPETVLEML---QKLLYQIDPNWTSRSDH 219
Query: 199 GTHFKHGAPEYIQRLGNMMTNETG--------NLRSAGVFQVLDVGC---------GVAS 241
++ K L ++ ++ N+++A + ++ C V
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 242 F----SAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALS---TKQLPYPSSSF- 293
F + + LD +M+ P + L + + L P S
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKS-----LLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 294 EMVHCSRCRVD-W-HANDGILLKEVD---RVLRPN---GYFVYSAPPAYRKDKDYP---- 341
E + D W H N L ++ VL P F + + P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILL 392
Query: 342 -LIWDKLV-----NLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEF 395
LIW ++ + + + K KE + + + L+L +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEK-----QPKES--TISIPSIYLELKVKLEN---- 441
Query: 396 KPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSES-----LSRIGITQE--EFTT--- 445
+ + + + + I + +PP ++ Y S L I + F
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---YFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 446 DTSFWQDQVRHYWQLMNVNETEIRNAMDMNAY-------CGGFAVALNSLPVWVM----- 493
D F + ++RH N + + + + Y + +N++ ++
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 494 -------NIVPISMKNTLSAIYN 509
+++ I++ AI+
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 95/645 (14%), Positives = 181/645 (28%), Gaps = 208/645 (32%)
Query: 79 MNKVTLTYRKTPLVIPESGMNVCPLTFNEYIPCHD-PSYVKKLLPSLDLSRKEELERHCP 137
+ Y+ V ++ F + C D K +L ++ + +
Sbjct: 11 TGEHQYQYKDILSVFEDA--------FVDNFDCKDVQDMPKSILSKEEI---DHIIMSKD 59
Query: 138 PLEK--RLF-CLVPPPKD-YKIPIRWPTSRDYVWQSNVNHTRLAEVKGG-QNWVHEKGQL 192
+ RLF L+ ++ + + +Y + + T + + ++ ++ +L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 193 WWFPGGGTHFKHGAPEYIQRLGNMMTNETG--NLRSA-GVFQVLD--VGCG-------VA 240
+ F A + RL + LR A V ++D +G G V
Sbjct: 120 Y---NDNQVF---AKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVC 171
Query: 241 SFSAFLLPLDIQT--MSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHC 298
+D + ++ + N + LE M+ L + +
Sbjct: 172 LSYKVQCKMDFKIFWLNL----KNCNSPETVLE-----MLQKLLYQ--------IDPNWT 214
Query: 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP---LI----WDKLVNLT 351
SR D +N + + + LR K K Y L+ +
Sbjct: 215 SRS--DHSSNIKLRIHSIQAELR-----------RLLKSKPYENCLLVLLNVQNAKA--- 258
Query: 352 TAMCWKLIARKIQTAIWIKEENQSC--LLHNADLKLIDVCDAVDEFKPSWN------TP- 402
N SC LL ++ D A S + TP
Sbjct: 259 -----------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 403 -----LGNCVQISSAQTNSQKLPPR-----PERLSVYSESLSRIGITQEEFTTDTSFWQD 452
L + Q LP P RLS+ +ES+ ++ T W D
Sbjct: 302 EVKSLLLKYLDCRP-----QDLPREVLTTNPRRLSIIAESI------RDGLAT----W-D 345
Query: 453 QVRHY--WQLMNVNETEIRN--AMDMNAYCGGFAVALNSLPV--------W-------VM 493
+H +L + E+ + + +V S + W VM
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 494 NIV------------PISMKNTLSAIY-----NRGILGAFHDWCEPFSTY--PRTYDLLH 534
+V P ++ +IY A H Y P+T+D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDD 463
Query: 535 ----------ANHLFSHYKNRG---EVCSLEDIMLEMDLI---IRPQG------------ 566
+H+ H KN + + L+ + IR
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 567 FIIIRDEKSLIT--------RIRDLAPKFLWDVELHSLENREKKM 603
++ K I + + FL +E + + ++ +
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEENLICSKYTDL 567
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-GIGAMI-SALSTKQLPYP 289
+ D+G G +S L + + + Q A+ + A + L P
Sbjct: 38 IADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHPQVEWFTGYAEN---LALP 91
Query: 290 SSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYS 329
S + V H + +E+ R++R + +
Sbjct: 92 DKSVDGVISIL--AIHHFSHLEKSFQEMQRIIRDGTIVLLT 130
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 33/172 (19%)
Query: 232 VLDVGCGVASFSAFLLP--------LDI-QTM-----SFAPKDGHENQIQFALERGIGAM 277
+D+G G + S L LD + M ++IQ
Sbjct: 47 CIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD---VH 103
Query: 278 ISALSTKQLPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAPPAYRK 336
+P + +++ SR V + D +E+ R+L+ G ++
Sbjct: 104 -------NIPIEDNYADLI-VSRGSV-FFWEDVATAFREIYRILKSGGKTYIGGGFGNKE 154
Query: 337 DKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDV 388
+D I +++ WK RK + ++ +L + ++
Sbjct: 155 LRDS--ISAEMIRKNPD--WKEFNRKNISQENVERFQN--VLDEIGISSYEI 200
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 28/125 (22%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGH-------ENQIQFALERGIGAMISALSTK 284
VLD+G G A +A F+P + ++ A + + +
Sbjct: 25 VLDIGAG-AGHTALA---------FSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQ 74
Query: 285 Q-----LPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFV---YSAPPAYR 335
Q LP+P SF+++ C H +D ++EV RVL+ +G F+ + AP
Sbjct: 75 QGTAESLPFPDDSFDIITCRY--AAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPV 132
Query: 336 KDKDY 340
D+
Sbjct: 133 LDEFV 137
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 35/183 (19%), Positives = 54/183 (29%), Gaps = 38/183 (20%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDG--------HENQIQFALERGIGAMISALST 283
VLDVGCG+ + L A Q+ A R A ++ T
Sbjct: 65 VLDVGCGIGKPAVRL----------ATARDVRVTGISISRPQVNQANARATAAGLANRVT 114
Query: 284 ------KQLPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAPPAYRK 336
LP+ +SF+ V H D G L+E+ RVLRP G +
Sbjct: 115 FSYADAMDLPFEDASFDAVWALESLH--HMPDRGRALREMARVLRPGGTVAIADF--VLL 170
Query: 337 DKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFK 396
+ + + + A+L + D + +
Sbjct: 171 APVEGAKKEAV---------DAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQAR 221
Query: 397 PSW 399
PS
Sbjct: 222 PSL 224
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 4e-06
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
+LD GCG +L + D I +A + A +
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGT---DLDPILIDYAKQDFPEARWVVGDLSVDQISET 106
Query: 292 SFEMVHCSRCRVDWHANDGIL---LKEVDRVLRPNGYFV 327
F+++ S V + L + R L +G V
Sbjct: 107 DFDLI-VSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 14/105 (13%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
VLD+GC + A + + + + A E+ ++ + T +PY
Sbjct: 36 VLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLDHVVLGDIETMDMPYEEE 92
Query: 292 SFEMVHCSRCRVDWH-----ANDGILLKEVDRVLRPNGYFVYSAP 331
F+ V + ++++V ++ NG + S P
Sbjct: 93 QFDCVIF------GDVLEHLFDPWAVIEKVKPYIKQNGVILASIP 131
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 7e-06
Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 44/155 (28%)
Query: 191 QLWWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFL---- 246
+ + G + G E +++ + + + +VLD+G G+ ++
Sbjct: 28 EFIF---GENYISSGGLEATKKILSDIELNENS-------KVLDIGSGLGGGCMYINEKY 77
Query: 247 ----LPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTK---------QLPYPSSSF 293
+DI N + A ER + + K +P ++F
Sbjct: 78 GAHTHGIDIC----------SNIVNMANER------VSGNNKIIFEANDILTKEFPENNF 121
Query: 294 EMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFV 327
++++ + + L ++ + L+P G +
Sbjct: 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLL 156
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 28/129 (21%), Positives = 41/129 (31%), Gaps = 28/129 (21%)
Query: 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGH-------ENQIQFALERGIGAMISALST 283
+VLDV G A FAP E+ ++ A G +
Sbjct: 40 EVLDVATG-GGHVANA---------FAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEY 89
Query: 284 KQ-----LPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFV---YSAPPAY 334
Q +P+ F +V C H + + E RVL+ G + SAP
Sbjct: 90 VQGDAEQMPFTDERFHIVTCRI--AAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEND 147
Query: 335 RKDKDYPLI 343
D Y +
Sbjct: 148 AFDVFYNYV 156
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 232 VLDVGCGVASFSAFLLP---LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPY 288
+++G G F+ L ++ S E + A +RG+ + + LP
Sbjct: 51 GVEIGVGTGRFAVPLKIKIGVEP---S-------ERMAEIARKRGVFVLKGTA--ENLPL 98
Query: 289 PSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAPP 332
SF+ +D LKE R+L+ GY +
Sbjct: 99 KDESFDFALMVT--TICFVDDPERALKEAYRILKKGGYLIVGIVD 141
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 34/227 (14%), Positives = 65/227 (28%), Gaps = 50/227 (22%)
Query: 192 LWWFPGGGTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGV--------ASFS 243
L+ P + + + L + + TG L+ + LD+G G F
Sbjct: 49 LYKEPVDQDEIREASLRTDEWLASEL-AMTGVLQRQA--KGLDLGAGYGGAARFLVRKFG 105
Query: 244 AFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTK---------QLPYPSSSFE 294
+ L+I Q + E + L+ ++P +S++
Sbjct: 106 VSIDCLNIA----------PVQNKRNEEY---NNQAGLADNITVKYGSFLEIPCEDNSYD 152
Query: 295 MVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA 353
+ + H+ D + +E RVL+P G + P D I
Sbjct: 153 FIWSQDAFL--HSPDKLKVFQECARVLKPRGVMAITD-PMKEDGIDKSSIQP-------- 201
Query: 354 MCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPSWN 400
I +I+ L L + D ++
Sbjct: 202 -----ILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYS 243
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGA-MISALSTKQLPYP- 289
VL+ GCG +A P + ++ D ++ A A + +LP
Sbjct: 52 VLEAGCGHGPDAARFGPQAARWAAY---DFSPELLKLARANAPHADVYEWNGKGELPAGL 108
Query: 290 SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD 337
+ F ++ R + + + P+ +F+Y P +
Sbjct: 109 GAPFGLIVSRRGPTSV-------ILRLPELAAPDAHFLYVGPRLNVPE 149
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPS 290
VLD+GCG ++ + +F D + I+ A +R S+ +LP+
Sbjct: 88 AVLDIGCGEGYYTHAFADALPEITTFGL-DVSKVAIKAAAKRYPQVTFCVASSHRLPFSD 146
Query: 291 SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWD 345
+S + + + +E+ RV++P G+ + + P + LI++
Sbjct: 147 TSMDAIIR----IYAPCK----AEELARVVKPGGWVITATPGPRHLMELKGLIYN 193
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-05
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 12/126 (9%)
Query: 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQI 266
PE ++ M + V L++G G + L+ + ++ D +
Sbjct: 20 PEVAGQIATAMASAVHPKGEEPV--FLELGVGTGRIALPLIARGYRYIAL---DADAAML 74
Query: 267 QFALER--GIGAMISAL--STKQLPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLR 321
+ ++ G+ + + + +P P S V + D +L E RVL+
Sbjct: 75 EVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVH--LWHLVPDWPKVLAEAIRVLK 132
Query: 322 PNGYFV 327
P G +
Sbjct: 133 PGGALL 138
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 22/145 (15%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGH-------ENQIQFALER--GIGAMISAL- 281
++D GCG L+PL P+ E + A E + L
Sbjct: 26 IVDYGCGYGYLGLVLMPL-------LPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE 78
Query: 282 -STKQLPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAPPAYRKDKD 339
++ +++ C H +L+++ ++ G + P
Sbjct: 79 GDATEIELN-DKYDIAIC--HAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMAS 135
Query: 340 YPLIWDKLVNLTTAMCWKLIARKIQ 364
Y L +K + +
Sbjct: 136 YLLDGEKQSEFIQLGVLQKLFESDT 160
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
+L+VG G + L + + + R A + LP+P
Sbjct: 40 LLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRAPEATWVRAWGEALPFPGE 94
Query: 292 SFEMVHCS---RCRVDWHANDGILLKEVDRVLRPNGYFV 327
SF++V D +L E RVLRP G V
Sbjct: 95 SFDVVLLFTTLEFVEDVER----VLLEARRVLRPGGALV 129
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQI----QFALERGIGAMISALSTKQLP 287
+L + G + FL L + + D + Q A E+G+ +
Sbjct: 33 ILCLAEGEGRNACFLASLGYEVTAV---DQSSVGLAKAKQLAQEKGVKITTVQSNLADFD 89
Query: 288 YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330
+ ++E + C + L +V + L+P G F+
Sbjct: 90 IVADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVFILEG 131
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
+L++GCG + +L + DG A R +G + + QL
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRR-LGRPVRTMLFHQLD-AID 101
Query: 292 SFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYS 329
+++ V C + ++ +LK + R L+P G F S
Sbjct: 102 AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYAS 140
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 8e-05
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 18/100 (18%)
Query: 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP 287
V D GCG ++ + + A D ++ Q+P
Sbjct: 67 ASLVVADFGCGDCRLASSIRN-PVHCFDLASLDPR---------------VTVCDMAQVP 110
Query: 288 YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFV 327
S ++ C N L+E +RVL+P G
Sbjct: 111 LEDESVDVAVF--CLSLMGTNIRDFLEEANRVLKPGGLLK 148
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 9e-05
Identities = 16/111 (14%), Positives = 29/111 (26%), Gaps = 17/111 (15%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTK------- 284
++DVGCG + + + D I+ A G+ + +
Sbjct: 40 LVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99
Query: 285 ------QLPYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVY 328
+M+ C H D + LR +G
Sbjct: 100 DFKFLGADSVDKQKIDMITAVEC---AHWFDFEKFQRSAYANLRKDGTIAI 147
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ-----L 286
LD+GCG S +L ++ D + I + L T+ L
Sbjct: 36 TLDLGCGNGRNSLYLAANGYDVDAW---DKNAMSIANVERIKSIENLDNLHTRVVDLNNL 92
Query: 287 PYPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSA 330
+ ++ + + + A L+ + R +P GY + A
Sbjct: 93 TFD-RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 26/164 (15%), Positives = 47/164 (28%), Gaps = 16/164 (9%)
Query: 204 HGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHE 263
+ + +++QR N+TG LD G G+ + LL + + D E
Sbjct: 61 NSSRKFLQRFLREGPNKTGTSC------ALDCGAGIGRITKRLLLPLFREVDMV--DITE 112
Query: 264 NQIQFALERGIGAMISALSTKQ-----LPYPSSSFEMVHCSRCRVDWHANDGI-LLKEVD 317
+ + A + S++++ L+
Sbjct: 113 DFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK 172
Query: 318 RVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361
LRPNG V A D V + ++I
Sbjct: 173 GSLRPNGIIVIKDNMAQEGVILDD--VDSSVCRDLDVVRRIICS 214
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 34/133 (25%)
Query: 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGH-------ENQIQFALERGIGAMISALST 283
++LD+GCG I ++ A K I+ A ++ +
Sbjct: 33 EILDIGCGSG---------KI-SLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTG 82
Query: 284 KQ----------LPYPSSSFEMVHCS---RCRVDWHANDGILLKEVDRVLRPNGYFV--- 327
+ L + SSF+ D I+ KEV RVL+P Y
Sbjct: 83 GKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRII-KEVFRVLKPGAYLYLVE 141
Query: 328 YSAPPAYRKDKDY 340
+ + +
Sbjct: 142 FGQNWHLKLYRKR 154
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.63 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.62 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.61 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.61 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.61 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.59 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.59 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.58 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.58 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.58 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.58 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.57 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.57 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.56 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.56 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.55 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.55 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.55 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.55 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.54 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.54 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.54 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.54 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.54 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.53 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.53 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.53 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.53 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.52 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.52 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.52 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.52 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.52 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.52 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.51 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.51 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.51 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.51 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.5 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.49 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.49 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.49 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.49 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.48 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.48 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.48 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.47 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.47 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.46 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.46 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.45 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.45 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.44 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.44 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.44 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.44 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.43 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.43 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.43 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.42 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.42 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.41 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.4 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.4 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.4 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.39 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.39 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.39 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.38 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.37 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.35 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.34 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.34 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.34 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.33 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.33 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.33 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.33 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.32 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.32 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.32 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.32 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.31 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.31 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.3 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.29 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.29 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.29 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.29 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.28 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.28 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.28 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.28 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.27 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.27 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.27 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.27 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.27 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.27 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.27 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.25 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.25 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.24 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.23 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.23 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.22 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.21 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.21 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.21 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.2 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.2 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.2 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.19 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.18 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.18 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.18 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.17 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.17 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.17 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.17 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.17 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.17 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.16 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.16 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.16 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.16 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.16 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.15 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.15 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.15 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.15 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.14 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.14 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.14 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.14 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.14 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.13 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.13 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.13 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.13 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.12 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.12 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.12 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.1 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.1 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.1 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.09 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.09 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.09 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.08 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.08 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.08 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.08 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.07 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.07 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.07 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.07 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.06 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.05 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.05 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.05 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.04 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.03 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.02 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.01 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.01 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.0 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.0 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.99 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.98 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.98 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.98 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.98 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.95 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.95 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.95 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.95 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.95 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.94 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.94 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.94 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.94 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.93 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.93 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.92 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.92 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.91 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.91 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.91 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.9 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.9 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.89 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.89 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.88 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.88 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.88 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.87 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.87 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.86 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.86 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.85 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.83 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.83 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.82 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.82 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.81 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.8 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.8 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.8 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.8 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.8 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.79 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.78 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.78 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.78 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.77 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.77 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.76 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.75 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.75 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.75 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.75 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.74 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.74 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.74 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.73 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.73 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.73 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.72 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.7 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.7 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.69 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.68 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.68 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.68 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.68 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.67 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.62 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.6 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.59 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.59 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.55 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.5 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.48 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.48 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.47 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.41 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.39 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.34 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.34 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.26 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.25 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.24 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.24 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.23 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.22 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.21 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.18 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.17 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.16 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.16 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.12 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.1 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.08 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.08 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.07 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.07 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.06 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.06 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.06 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.06 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.05 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.04 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.02 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.01 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.0 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.0 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.0 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.0 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 97.99 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 97.99 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 97.99 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.98 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 97.98 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 97.98 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.98 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.98 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 97.97 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.96 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.96 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.95 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.95 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.93 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 97.93 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.92 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 97.92 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 97.92 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 97.9 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 97.9 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.89 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 97.88 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.88 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.87 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.87 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.87 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.86 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.86 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.85 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 97.85 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 97.84 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.83 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.83 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 97.83 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.83 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.82 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 97.82 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.81 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 97.81 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 97.79 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 97.79 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.78 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.78 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 97.78 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 97.78 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.78 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.76 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.76 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 97.75 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 97.75 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.74 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 97.74 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.74 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 97.74 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 97.74 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 97.74 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.73 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.72 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 97.71 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 97.7 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.7 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 97.69 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.68 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.67 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.67 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.67 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.66 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.66 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 97.66 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 97.65 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.64 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.63 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 97.63 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.62 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.6 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 97.6 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 97.59 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.59 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 97.58 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 97.58 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.56 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.54 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.54 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.53 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 97.52 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 97.52 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 97.51 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 97.5 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 97.5 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.49 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.49 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.49 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.49 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.47 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.46 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 97.46 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.45 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.45 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 97.44 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 97.44 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.42 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 97.41 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 97.41 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 97.39 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.38 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 97.37 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 97.37 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 97.37 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.35 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 97.35 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 97.34 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.33 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 97.33 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 97.31 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 97.31 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.3 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 97.3 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 97.3 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 97.29 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.28 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 97.27 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.24 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 97.24 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 97.22 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 97.22 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 97.21 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.2 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.19 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 97.19 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 97.19 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.18 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.18 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.17 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.17 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 97.16 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 97.14 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 97.14 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.14 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 97.1 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.09 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.09 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 97.09 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 97.08 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 97.07 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 97.06 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 97.04 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 97.03 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 97.02 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.01 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 97.01 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 96.99 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 96.98 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 96.97 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 96.96 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 96.94 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.94 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.94 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 96.86 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 96.85 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 96.83 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 96.79 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 96.76 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 96.75 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 96.75 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 96.74 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 96.73 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 96.71 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 96.69 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 96.66 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 96.63 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 96.61 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 96.61 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.6 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 96.6 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 96.58 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 96.57 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 96.57 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 96.54 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 96.46 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 96.42 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 96.42 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 96.4 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 96.4 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 96.4 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.38 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 96.37 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 96.3 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 96.3 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 96.28 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 96.26 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 96.25 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 96.23 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 96.22 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 96.21 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.2 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 96.19 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 96.19 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 96.17 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.15 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.08 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 96.05 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 96.03 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 96.02 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 96.02 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 95.99 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 95.98 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 95.96 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 95.89 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 95.88 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 95.88 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 95.83 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 95.76 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 95.75 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 95.74 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.72 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 95.62 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 95.62 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 95.53 |
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=148.58 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=105.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-CcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-GAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
++.+|||||||+|.++..+++.+. .++++|+++.+++.|+++.. ++.+..+|++.+ +++++||+|++..+++|+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc
Confidence 445699999999999999998876 57788999999999998865 688888888887 4688999999999888876
Q ss_pred cchHHHHHHHH-HhccCCeEEEEEeCCCCCC------------CC----------C--ChhhHHHHHHHHHHcCceEEEE
Q 039518 307 ANDGILLKEVD-RVLRPNGYFVYSAPPAYRK------------DK----------D--YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 307 ~d~~~~L~el~-RvLrPGG~Liis~p~~~~~------------~~----------~--~~~~W~~le~La~~~gw~~v~~ 361 (617)
++..+|+++. |+|||||++++++|..... .. . ....-+++.+++++.||+++..
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 8899999999 9999999999998754210 00 0 0112345889999999999875
Q ss_pred e
Q 039518 362 K 362 (617)
Q Consensus 362 ~ 362 (617)
.
T Consensus 197 ~ 197 (250)
T 2p7i_A 197 S 197 (250)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-16 Score=159.19 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=85.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
+.+|||||||+|.++..|++++. .++++|+|+.|++.|+++ .++.+.+++++++|+++++||+|+|+.++ ||. +
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~-~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~-~ 113 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRH-PRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWF-D 113 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCC-TTEEEEECCTTCCCCCSSCEEEEEECSCC-TTC-C
T ss_pred CCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhc-CCceeehhhhhhhcccCCcccEEEEeeeh-hHh-h
Confidence 35699999999999999999875 577889999999988653 46889999999999999999999999876 666 6
Q ss_pred hHHHHHHHHHhccCCeEEEEEeC
Q 039518 309 DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG~Liis~p 331 (617)
+..++.|+.|+|||||.|++...
T Consensus 114 ~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 114 LDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEEC
Confidence 88999999999999999998764
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=147.34 Aligned_cols=133 Identities=18% Similarity=0.238 Sum_probs=104.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||||||+|.++..|++++. .++++|+++.+++.|+++ + .++.+..+|++.+|+++++||+|+++.+
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA 112 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhh
Confidence 3566799999999999999998864 788889999999998876 3 3478899999999999999999999988
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCC----------------CCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRK----------------DKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~----------------~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
++|+. ++..+|.++.|+|||||+++++++..... ..........+.+++++.||+.+....
T Consensus 113 l~~~~-d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 189 (260)
T 1vl5_A 113 AHHFP-NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHC 189 (260)
T ss_dssp GGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEE
T ss_pred hHhcC-CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 88776 89999999999999999999975421110 000011134578888999999776443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=143.42 Aligned_cols=131 Identities=11% Similarity=0.085 Sum_probs=108.9
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc-cc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH-AN 308 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~-~d 308 (617)
.+|||+|||+|.++..|++++. .++++|+++.+++.|+++..++.+..+|+..+++++++||+|+++.+++|+. ++
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 4599999999999999999865 5778899999999999998889999999999999899999999999888876 57
Q ss_pred hHHHHHHHHHhccCCeEEEEEeCCCCCCC-------CCChhhHHHHHHHHHHcCceEEEEee
Q 039518 309 DGILLKEVDRVLRPNGYFVYSAPPAYRKD-------KDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG~Liis~p~~~~~~-------~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
+..+|+++.++|+|||+++++.+...... .......+++.+++++.||+++....
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 89999999999999999999975432210 00111245699999999999988543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=147.31 Aligned_cols=130 Identities=22% Similarity=0.194 Sum_probs=105.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh--CCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER--GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er--g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
++.+|||||||+|.++..+++++. .++++|+++.+++.|+++ ..++.+..+|+..+++++++||+|++..+++|+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 455799999999999999999865 677889999999999987 446788899999999999999999999988877
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeCCCCCCCC-------------CChhhHHHHHHHHHHcCceEEEE
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK-------------DYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~-------------~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. ++..++.++.++|+|||+++++++....... .....-..+.+++++.||+++..
T Consensus 130 ~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 130 E-EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp S-CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred c-CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 5 8999999999999999999998743221110 00011245889999999999874
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=147.77 Aligned_cols=131 Identities=8% Similarity=0.007 Sum_probs=98.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-----------------CCCcEEEEecCCCCCCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-----------------GIGAMISALSTKQLPYP 289 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-----------------g~~~~~~~~d~~~Lpf~ 289 (617)
.++.+|||+|||+|..+..|++++. .++++|+|+.|++.|+++ ..++.+.++|+.+++++
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 4566899999999999999999875 678889999999999886 24678999999999977
Q ss_pred C-CCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCC---CCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 290 S-SSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYR---KDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 290 d-~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~---~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+ ++||+|++..+++++. ++...+++++.|+|||||++++.+..... ..+.....-+++.++++. ||+++..
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 5 7999999988777766 23567999999999999985444321111 111111123457777776 8887653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=150.23 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=106.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.++.+|||||||+|.++..|++++. ..++++|+++.+++.|+++. .++.+..+|+..+++++++||+|+++.+++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence 4567899999999999999988753 26788999999999999885 357888889988999889999999999888
Q ss_pred ccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCC-------CCChhhHHHHHHHHHHcCceEEEEe
Q 039518 304 DWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-------KDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 304 h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-------~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
|+. +++..+|.++.++|||||+++++++...... ......-+.+.+++++.||+++...
T Consensus 170 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence 875 3578999999999999999999885221110 0111123568899999999988753
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=144.26 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=108.2
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
...++.+|||||||+|.++..++++ +. .++++|+++.+++.|+++. .++.+..+|+..+|+++++||+|+++.
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 128 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRD 128 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEES
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHH
Confidence 4567788999999999999999987 43 6788899999999999986 467889999999999999999999999
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh-------------hhHHHHHHHHHHcCceEEEEe
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP-------------LIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~-------------~~W~~le~La~~~gw~~v~~~ 362 (617)
+++|+. .++..+++++.|+|||||.+++.++.......... ..-+.+.+++++.||+.+...
T Consensus 129 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 129 AILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 888874 47889999999999999999998753221000000 013348888999999987643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-15 Score=146.22 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=91.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.++.+|||||||+|.++..+++.+.. .++++|+++.+++.|+++. .++.+..+|+..+++++++||+|+++.+++|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhh
Confidence 46778999999999999999998764 6788999999999999885 4688899999999999999999999998777
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+ +++..+|+++.++|||||.++++.+
T Consensus 121 ~-~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 121 I-ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp C-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred h-hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 6 4899999999999999999999854
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=141.92 Aligned_cols=133 Identities=18% Similarity=0.263 Sum_probs=105.3
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
+.++.+|||||||+|.++..+++.+. .++++|+++.+++.|+++ + .++.+..+|++.+|+++++||+|+++.
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRY 95 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEES
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECC
Confidence 34567899999999999999998865 678889999999988765 3 357888999999999999999999998
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCCC----------------CCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRK----------------DKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~----------------~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+++|+. ++..+|.++.|+|||||++++.++..... .........++.+++++.||+.+...
T Consensus 96 ~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 172 (239)
T 1xxl_A 96 AAHHFS-DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 172 (239)
T ss_dssp CGGGCS-CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred chhhcc-CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEE
Confidence 888876 89999999999999999999986432110 00011123457888899999877643
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=141.15 Aligned_cols=136 Identities=13% Similarity=0.155 Sum_probs=106.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-CcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-GAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
++.+|||+|||+|.++..|++++. .++++|+++.+++.|+++.. ++.+..+|+..++++ ++||+|+++.+++|+.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSC
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCC
Confidence 455799999999999999998864 67888999999999999865 688889999999988 8999999998887776
Q ss_pred cchHH--HHHHHHHhccCCeEEEEEeCCCCCCCCC----------------------ChhhHHHHHHHHHHcCceEEEEe
Q 039518 307 ANDGI--LLKEVDRVLRPNGYFVYSAPPAYRKDKD----------------------YPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 307 ~d~~~--~L~el~RvLrPGG~Liis~p~~~~~~~~----------------------~~~~W~~le~La~~~gw~~v~~~ 362 (617)
++.. +|+++.++|||||.++++++........ .-..-+.+.++++++||+++...
T Consensus 121 -~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 121 -DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp -HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred -hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 5655 9999999999999999997532211000 00012458889999999988766
Q ss_pred eeeEEE
Q 039518 363 IQTAIW 368 (617)
Q Consensus 363 ~~~~Iw 368 (617)
.....|
T Consensus 200 ~~~~~w 205 (220)
T 3hnr_A 200 LNHFVW 205 (220)
T ss_dssp CSSSEE
T ss_pred ccceEE
Confidence 553333
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=140.08 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=107.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..+++.+.....++++|+++.+++.|+++ +. ++.+..+|+..+++++++||+|+++.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh
Confidence 4556799999999999999988752223788899999999998876 33 588899999999999999999999998
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCC--C--ChhhHHHHHHHHHHcCceEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK--D--YPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~--~--~~~~W~~le~La~~~gw~~v~~~ 362 (617)
++|+. ++..+++++.++|+|||.+++++........ . .....+++.+++++.||+.+...
T Consensus 116 l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 116 FHELS-EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp GGGCS-SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred hhhcC-CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 88775 8999999999999999999998753222111 0 11114568999999999988754
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=148.04 Aligned_cols=132 Identities=16% Similarity=0.160 Sum_probs=105.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
+.++.+|||||||+|.++..|++. +. .++++|+++.+++.|+++ +. ++.+..+|+..+|+++++||+|++
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 156 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWS 156 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEe
Confidence 346678999999999999999886 44 678889999999988875 33 478899999999999999999999
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCC--hh-----------hHHHHHHHHHHcCceEEEE
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDY--PL-----------IWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~--~~-----------~W~~le~La~~~gw~~v~~ 361 (617)
..+++|+. ++..+|+++.|+|||||+++++++......... .. .-..+.+++++.||+++..
T Consensus 157 ~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 157 QDAFLHSP-DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp ESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred cchhhhcC-CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 99888876 799999999999999999999976322111100 00 1234778889999988764
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=144.24 Aligned_cols=133 Identities=21% Similarity=0.215 Sum_probs=104.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
+.++.+|||||||+|.++..+++.. ...++++|+++.+++.|+++ +. ++.+..+|+..+|+++++||+|++.
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 136 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWAL 136 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEe
Confidence 4567789999999999999998753 13788899999999988876 43 4788899999999999999999999
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC----------------ChhhHHHHHHHHHHcCceEEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD----------------YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~----------------~~~~W~~le~La~~~gw~~v~~ 361 (617)
.+++|+. ++..+|+++.++|||||+++++++........ ....-+.+.+++++.||+++..
T Consensus 137 ~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 213 (273)
T 3bus_A 137 ESLHHMP-DRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTST 213 (273)
T ss_dssp SCTTTSS-CHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred chhhhCC-CHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 8888775 78999999999999999999987532211100 0001234788888999988763
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=143.54 Aligned_cols=128 Identities=19% Similarity=0.214 Sum_probs=101.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC--CCCCCCeeEEEecccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL--PYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L--pf~d~sFDlV~~s~~l~h 304 (617)
.++.+|||||||+|.++..+++.+. .++++|+++.+++.|+++ +.+..+|..++ |+++++||+|+|+.+++|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~ 113 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH 113 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence 3567799999999999999998866 467889999999999987 67777777665 788999999999998888
Q ss_pred ccc-chHHHHHHHHHhccCCeEEEEEeCCCCCC--------CCC--ChhhHHHHHHHHHHcCceEEE
Q 039518 305 WHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRK--------DKD--YPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 305 ~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~--------~~~--~~~~W~~le~La~~~gw~~v~ 360 (617)
+.. +...+++++.|+|||||++++.++..... .+. ....-+.+.+++++.||+.+.
T Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~ 180 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVK 180 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEE
Confidence 762 34899999999999999999998753210 011 111135688999999999776
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=139.98 Aligned_cols=131 Identities=20% Similarity=0.255 Sum_probs=104.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH- 306 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~- 306 (617)
++.+|||+|||+|.++..+++++. .++++|+++.+++.|+++. ++.+..+++..++ ++++||+|+|+.+++|+.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCH
T ss_pred CCCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCH
Confidence 456799999999999999998865 6778899999999999874 4566778888888 788999999999888876
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC------ChhhHHHHHHHHHHcC-ceEEEEee
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD------YPLIWDKLVNLTTAMC-WKLIARKI 363 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~------~~~~W~~le~La~~~g-w~~v~~~~ 363 (617)
++...+|+++.++|||||+++++.+........ ....-+.+.+++++.| |+++....
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 467789999999999999999997644321110 0012456899999999 99987543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=141.99 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=104.5
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
+.++.+|||||||+|.++..+++.+.. .++++|+++.+++.|+++ +.. +.+..+|+..+|+++++||+|+++
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 121 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSE 121 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEec
Confidence 356678999999999999999988643 788899999999988876 433 788999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC--Chhh----------HHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD--YPLI----------WDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~--~~~~----------W~~le~La~~~gw~~v~ 360 (617)
.+++|+ ++..+++++.++|||||+++++++........ .... ...+.++++++||+.+.
T Consensus 122 ~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 122 GAIYNI--GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp SCSCCC--CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred ChHhhc--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 888776 68899999999999999999998531111111 0111 23478888999998876
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=148.11 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=86.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCC-CcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLD-IQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~g-v~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
++++.+|||||||+|.++..|+++. .....++++|+|+.|++.|+++ + .++.+..+|+.++|++ .||+|++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~ 145 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 145 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--cccccee
Confidence 4678899999999999999998762 2334788999999999999886 2 3578889999988874 5999999
Q ss_pred cccccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.+++++. ++...+|++++|+|||||.|++++.
T Consensus 146 ~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 146 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 98777665 2345789999999999999999875
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=137.42 Aligned_cols=129 Identities=13% Similarity=0.142 Sum_probs=103.0
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
+|||+|||+|.++..|+++ ....++++|+++.+++.|+++ + .++.+..+|+..+++++++||+|+++.+++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 6999999999999999987 234788999999999999887 3 3578899999999999999999999998888
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeCCCCCCC------------C---------CChhhHHHHHHHHHHcCceEEEEe
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD------------K---------DYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~------------~---------~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+ .++..+++++.++|+|||.++++++...... + .....-+.+.+++++.||+.+...
T Consensus 124 ~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 124 W-EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp C-SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred c-cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 7 4899999999999999999999864321100 0 000011448889999999877644
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=143.61 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=104.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
+.++.+|||||||+|.++..+++.+. ..++++|+++.+++.|+++ ++ ++.+..+|+.++|+++++||+|+|+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~ 121 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSE 121 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEc
Confidence 45678899999999999999998832 2788899999999998876 43 3889999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC--ChhhH----------HHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD--YPLIW----------DKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~--~~~~W----------~~le~La~~~gw~~v~ 360 (617)
.+++|+ ++..+++++.++|||||+++++++........ ....| ..+.++++++||+.+.
T Consensus 122 ~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (267)
T 3kkz_A 122 GAIYNI--GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVA 192 (267)
T ss_dssp SCGGGT--CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEE
T ss_pred CCceec--CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEE
Confidence 988776 78999999999999999999987632111111 11122 3478888999999886
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-14 Score=136.99 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=87.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI---GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~---~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.++.+|||||||+|.++..+++.... ..++++|+++.+++.|+++.. ++.+..+|+..++++ ++||+|+++.+++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIH 120 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccc
Confidence 46688999999999999999987422 278889999999999998743 678899999999887 8999999999888
Q ss_pred ccccchH--HHHHHHHHhccCCeEEEEEeC
Q 039518 304 DWHANDG--ILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 304 h~~~d~~--~~L~el~RvLrPGG~Liis~p 331 (617)
|+. ++. .+++++.|+|||||.++++++
T Consensus 121 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 121 HLE-DEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 875 444 599999999999999999874
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-14 Score=139.85 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=89.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccC--CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL--DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~--gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
.++.+|||||||+|.++..++++ +. .++++|+++.+++.|+++..++.+..+|++.++ ++++||+|+++.++++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhh
Confidence 45667999999999999999887 43 577889999999999998777899999999988 7889999999987776
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
+ .++..+|.++.++|||||+++++.+.
T Consensus 108 ~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 108 V-PDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp S-TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred C-CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 6 48999999999999999999999863
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=143.52 Aligned_cols=131 Identities=12% Similarity=0.049 Sum_probs=101.9
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
+.++.+|||||||+|.++..+++... ..++++|+++.+++.|+++ ++ ++.+..+|+.++++ +++||+|+|.
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~ 110 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACV 110 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEEC
Confidence 34667899999999999999987631 2678889999999998765 43 48889999999987 8899999999
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC-------------ChhhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD-------------YPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~-------------~~~~W~~le~La~~~gw~~v~ 360 (617)
.+++|+. ++..+|+++.|+|||||+++++++........ .......+.++++++||+.+.
T Consensus 111 ~~~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 183 (256)
T 1nkv_A 111 GATWIAG-GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 183 (256)
T ss_dssp SCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred CChHhcC-CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEE
Confidence 8887766 78999999999999999999987532111100 001124578888999998765
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.6e-14 Score=136.82 Aligned_cols=132 Identities=22% Similarity=0.230 Sum_probs=105.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----C------CcEEEEecCCCCCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----I------GAMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~------~~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
++.+|||+|||+|.++..+++++. .++++|+++.+++.|+++. . ++.+...++..+++++++||+|+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 456799999999999999999865 6788899999999999863 2 35788889999999999999999
Q ss_pred ecccccccccchH---HHHHHHHHhccCCeEEEEEeCCCCCCCCC--------------------------------Chh
Q 039518 298 CSRCRVDWHANDG---ILLKEVDRVLRPNGYFVYSAPPAYRKDKD--------------------------------YPL 342 (617)
Q Consensus 298 ~s~~l~h~~~d~~---~~L~el~RvLrPGG~Liis~p~~~~~~~~--------------------------------~~~ 342 (617)
++.+++|+. ++. .+++++.++|||||+++++++...+.... ...
T Consensus 107 ~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 107 MQAFLTSVP-DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp EESCGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred EcchhhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 998888776 566 89999999999999999987543221100 011
Q ss_pred hHHHHHHHHHHcCceEEEEee
Q 039518 343 IWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 343 ~W~~le~La~~~gw~~v~~~~ 363 (617)
.-+++.++++++||+++....
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEe
Confidence 245688999999999987544
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=135.98 Aligned_cols=132 Identities=15% Similarity=0.125 Sum_probs=103.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-CCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG-IGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg-~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
.++.+|||||||+|.++..+++++. .++++|+++.+++.|++.+ .++.+..+|+..+ +++++||+|+++.+++|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~ 120 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHV 120 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGS
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcC
Confidence 4556899999999999999998854 6778899999999999877 5688889999888 788999999999988887
Q ss_pred ccc-hHHHHHHHHHhccCCeEEEEEeCCCCCCC----------C-------CC--------hhhHHHHHHHHHHcCceEE
Q 039518 306 HAN-DGILLKEVDRVLRPNGYFVYSAPPAYRKD----------K-------DY--------PLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 306 ~~d-~~~~L~el~RvLrPGG~Liis~p~~~~~~----------~-------~~--------~~~W~~le~La~~~gw~~v 359 (617)
... ...+|+++.++|+|||.++++++...... + .. ...-+++.+++++.||++.
T Consensus 121 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 200 (218)
T 3ou2_A 121 PDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCS 200 (218)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEE
Confidence 622 37899999999999999999875321000 0 00 0013568899999999966
Q ss_pred EEe
Q 039518 360 ARK 362 (617)
Q Consensus 360 ~~~ 362 (617)
...
T Consensus 201 ~~~ 203 (218)
T 3ou2_A 201 VDE 203 (218)
T ss_dssp EEE
T ss_pred eee
Confidence 543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-14 Score=142.29 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=88.7
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.++.+|||||||+|.++..+++.+. .++++|+++.+++.|+++..++.+..+|++.+|+ +++||+|+++.+++++.
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCc
Confidence 3556799999999999999998554 6788899999999999987778899999999987 57899999998777665
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++..+|.++.|+|||||++++..+.
T Consensus 132 -d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 132 -EPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 8999999999999999999998764
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-14 Score=144.89 Aligned_cols=133 Identities=11% Similarity=0.014 Sum_probs=106.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
+.++.+|||||||+|.++..|+++ +. .++++|+++.+++.|+++ ++ ++.+..+|+..+|+++++||+|++
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 191 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWN 191 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEE
Confidence 567889999999999999999987 54 678889999999998875 43 488999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChh--------------hHHHHHHHHHHcCceEEEEee
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPL--------------IWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~--------------~W~~le~La~~~gw~~v~~~~ 363 (617)
+.+++|+ ++..+|.++.|+|||||++++.++........... .-+.+.+++++.||+++....
T Consensus 192 ~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 192 NESTMYV--DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp ESCGGGS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred CCchhhC--CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 9888776 49999999999999999999987533221111110 123478899999999887543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=140.43 Aligned_cols=134 Identities=17% Similarity=0.104 Sum_probs=105.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-----CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-----GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-----~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||||||+|.++..|++++. ..++++|+++.+++.|+++.. ++.+..+|+..+++++++||+|++..++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 567899999999999999988763 378889999999999998743 3678888988898888899999999988
Q ss_pred ccccc-chHHHHHHHHHhccCCeEEEEEeCCCCC------CCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 303 VDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYR------KDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 303 ~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~------~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
+|+.+ +...+|+++.++|+|||+++++++.... ........-+++.+++++.||+++....
T Consensus 157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 88762 1348999999999999999998753221 0011111245689999999999887543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=138.31 Aligned_cols=101 Identities=24% Similarity=0.360 Sum_probs=88.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC--CcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI--GAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
++.+|||||||+|.++..+++++.. .++++|+++.+++.|+++.. ++.+..+|+..+++++++||+|+++.+++|+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc
Confidence 4567999999999999999988652 67888999999999998754 4788888998888888999999999887776
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. ++..+|+++.++|+|||+++++++
T Consensus 121 ~-~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 121 E-DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp S-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 5 899999999999999999999874
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=138.14 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=87.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecc-cccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSR-CRVDWH 306 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~-~l~h~~ 306 (617)
++.+|||||||+|.++..|++++. .++++|+++.+++.|+++..++.+..+|+..+++ +++||+|+|+. +++|+.
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSC
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcC
Confidence 346799999999999999999875 6788899999999999987788999999999887 78999999997 777765
Q ss_pred --cchHHHHHHHHHhccCCeEEEEEe
Q 039518 307 --ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 307 --~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++...+|+++.++|||||++++..
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 456789999999999999999963
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=140.88 Aligned_cols=105 Identities=14% Similarity=0.266 Sum_probs=89.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
..++.+|||||||+|.++..+++.......++++|+++.+++.|+++ +.++.+.++|+.+++++ ++||+|++..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 98 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF 98 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECCh
Confidence 34667899999999999999998743323788899999999999876 34688889999998874 68999999988
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++|+. ++..+++++.++|||||++++.++.
T Consensus 99 l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHMT-TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCC-CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 77765 8899999999999999999999875
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=133.88 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=98.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC----------CcEEEEecCCCCCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI----------GAMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~----------~~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
++.+|||||||+|.++..|++++.. ..++++|+++.+++.|+++.. ++.+..+|+..+++++++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 3457999999999999999987642 378899999999999988632 57888899988888888999999
Q ss_pred ecccccccccch--HHHHHHHHHhccCCeEEEEEeCCCCCC-----C-------CCChh--hHHH----HHHHHHHcCce
Q 039518 298 CSRCRVDWHAND--GILLKEVDRVLRPNGYFVYSAPPAYRK-----D-------KDYPL--IWDK----LVNLTTAMCWK 357 (617)
Q Consensus 298 ~s~~l~h~~~d~--~~~L~el~RvLrPGG~Liis~p~~~~~-----~-------~~~~~--~W~~----le~La~~~gw~ 357 (617)
|+.+++|+. ++ ..+++++.++|||||.++.+.. ..+. . ..+.. .-++ +.+++++.||+
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~ 185 (219)
T 3jwg_A 108 VIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTPN-KEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS 185 (219)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEB-GGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred EHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEccc-hhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence 999888875 44 6899999999999996655432 2110 0 01100 1122 44889999998
Q ss_pred EEEE
Q 039518 358 LIAR 361 (617)
Q Consensus 358 ~v~~ 361 (617)
+...
T Consensus 186 v~~~ 189 (219)
T 3jwg_A 186 VRFL 189 (219)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=128.14 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=103.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEec-ccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCS-RCRVDWH 306 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s-~~l~h~~ 306 (617)
++.+|||+|||+|.++..+++.+. .++++|+++.+++.++++..++.+...|+..+++++++||+|+++ .++++..
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 566799999999999999998864 678889999999999998877899999998888888999999998 4555543
Q ss_pred -cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 307 -ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 307 -~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
++...++.++.++|+|||.+++..+.... .. ...+.+++++.||+++..
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~----~~--~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGRG----WV--FGDFLEVAERVGLELENA 172 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTSS----CC--HHHHHHHHHHHTEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCCC----cC--HHHHHHHHHHcCCEEeee
Confidence 34578999999999999999998764321 11 556888899999998764
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=136.60 Aligned_cols=129 Identities=13% Similarity=0.071 Sum_probs=102.2
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC------CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI------GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~------~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.+|||||||+|.++..|++.+. .++++|+++.+++.|+++.. ++.+..+|+..++ ++++||+|+++.+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 4799999999999999988654 68889999999999988743 3788889988877 456899999998887
Q ss_pred ccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCC--CCChhhHHHHHHHHHHcCceEEEEe
Q 039518 304 DWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKD--KDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 304 h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~--~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
++. ++...++.++.++|||||++++...+..... +......+.+.++++..||+++...
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 775 3678899999999999999999875432211 1111224668999999999988743
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.2e-14 Score=142.14 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=104.7
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCC-CCCCCeeEEEeccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLP-YPSSSFEMVHCSRC 301 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lp-f~d~sFDlV~~s~~ 301 (617)
+.+|||||||+|.++..+++.+. .++++|+++.+++.|+++ + .++.+..+|+..++ +++++||+|+++.+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 46799999999999999999865 678889999999999876 3 34778889998887 78899999999988
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCC-------------------------CCCCChhhHHHHHHHHHHcCc
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYR-------------------------KDKDYPLIWDKLVNLTTAMCW 356 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~-------------------------~~~~~~~~W~~le~La~~~gw 356 (617)
++|+. ++..+|+++.++|||||++++..+.... ........-+++.+++++.||
T Consensus 146 l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 224 (285)
T 4htf_A 146 LEWVA-DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW 224 (285)
T ss_dssp GGGCS-CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred hhccc-CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence 87775 8899999999999999999998752100 000111123568999999999
Q ss_pred eEEEEee
Q 039518 357 KLIARKI 363 (617)
Q Consensus 357 ~~v~~~~ 363 (617)
+++....
T Consensus 225 ~v~~~~~ 231 (285)
T 4htf_A 225 QIMGKTG 231 (285)
T ss_dssp EEEEEEE
T ss_pred ceeeeee
Confidence 9887543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=130.92 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=101.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.++.+|||+|||+|.++..+++.+ . .++++|+++.+++.|+++..++.+...| +++++++||+|+++.+++|+.
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE--E-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhccc
Confidence 455679999999999999999876 2 7889999999999999987678888777 778889999999999888775
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC----ChhhHHHHHHHHHHcCceEEEEee
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD----YPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~----~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
++..+++++.|+|||||++++.+......... ....-+++.++++ ||+.+....
T Consensus 90 -~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 90 -DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence 89999999999999999999987533221111 0111344777777 999887543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=144.25 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=106.9
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP 287 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp 287 (617)
.+.+.+.+.++ ..++.+|||||||+|.++..+++.+. .++++|+++.+++.|+++. ++.+..+|++.+|
T Consensus 21 ~~~~~l~~~~~-------~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~ 89 (261)
T 3ege_A 21 RIVNAIINLLN-------LPKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLA 89 (261)
T ss_dssp HHHHHHHHHHC-------CCTTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCT-TEEEECCCTTSCC
T ss_pred HHHHHHHHHhC-------CCCCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhcc-CCEEEECchhhCC
Confidence 44555555543 23556799999999999999998654 6788899999999887766 7889999999999
Q ss_pred CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CC----Ch----------hhHHHHHHHHH
Q 039518 288 YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KD----YP----------LIWDKLVNLTT 352 (617)
Q Consensus 288 f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~----~~----------~~W~~le~La~ 352 (617)
+++++||+|++..+++|+. ++..+++++.|+|| ||++++.++...... .. .. ..-+.+. +++
T Consensus 90 ~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 166 (261)
T 3ege_A 90 LPDKSVDGVISILAIHHFS-HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQ 166 (261)
T ss_dssp SCTTCBSEEEEESCGGGCS-SHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHH
T ss_pred CCCCCEeEEEEcchHhhcc-CHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHH
Confidence 9999999999999888874 89999999999999 998888765321111 00 00 0112366 889
Q ss_pred HcCceEEEE
Q 039518 353 AMCWKLIAR 361 (617)
Q Consensus 353 ~~gw~~v~~ 361 (617)
++||+.+..
T Consensus 167 ~aGF~~v~~ 175 (261)
T 3ege_A 167 ENTKRRVEA 175 (261)
T ss_dssp HHHCSEEEE
T ss_pred HcCCCceeE
Confidence 999987764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-14 Score=150.49 Aligned_cols=136 Identities=24% Similarity=0.199 Sum_probs=107.0
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---------C----CCcEEEEecCCCC------
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---------G----IGAMISALSTKQL------ 286 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---------g----~~~~~~~~d~~~L------ 286 (617)
..++.+|||||||+|.++..|++.......++++|+++.+++.|+++ | .++.+..+|+..+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 45778999999999999999987621122788899999999999986 4 5788999999887
Q ss_pred CCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC--------------ChhhHHHHHHHHH
Q 039518 287 PYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD--------------YPLIWDKLVNLTT 352 (617)
Q Consensus 287 pf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~--------------~~~~W~~le~La~ 352 (617)
++++++||+|+++.+++++. ++..+|+++.|+|||||+|+++++........ ....++++.++++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 239 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLST-NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVA 239 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCC-CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHH
Confidence 89999999999998777665 89999999999999999999986532211100 0012466899999
Q ss_pred HcCceEEEEe
Q 039518 353 AMCWKLIARK 362 (617)
Q Consensus 353 ~~gw~~v~~~ 362 (617)
+.||+.+...
T Consensus 240 ~aGF~~v~~~ 249 (383)
T 4fsd_A 240 EAGFRDVRLV 249 (383)
T ss_dssp HTTCCCEEEE
T ss_pred HCCCceEEEE
Confidence 9999877543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=140.58 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=98.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----------------------CCcEEEEecCCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----------------------IGAMISALSTKQ 285 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----------------------~~~~~~~~d~~~ 285 (617)
++.+|||+|||+|..+.+|+++|. .|+++|+|+.+++.|+++. .++.+.++|+..
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 456799999999999999999976 6788899999999997653 457889999999
Q ss_pred CCCCC-CCeeEEEeccccccccc-chHHHHHHHHHhccCCeEEEEEeCCCC---CCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 286 LPYPS-SSFEMVHCSRCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAY---RKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 286 Lpf~d-~sFDlV~~s~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~---~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
+++++ ++||+|++..+++++.. +...+++++.|+|||||++++.+.... ...+.....-+++.+++.. +|+++.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~ 223 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQC 223 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEE
Confidence 98764 89999999887777763 456799999999999999975432111 1111111123567777766 588776
Q ss_pred Ee
Q 039518 361 RK 362 (617)
Q Consensus 361 ~~ 362 (617)
..
T Consensus 224 ~~ 225 (252)
T 2gb4_A 224 LE 225 (252)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=142.07 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=103.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----CC--cEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----IG--AMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~~--~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
+.++.+|||||||+|.++..|+........++++|+++.+++.|+++. .. +.+..+|+..++++ ++||+|+++
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~ 194 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN 194 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence 356778999999999999999633222347889999999999998873 22 78899999999987 899999999
Q ss_pred ccccccccchHH---HHHHHHHhccCCeEEEEEeCCCCCC----CC----C----------------------ChhhHHH
Q 039518 300 RCRVDWHANDGI---LLKEVDRVLRPNGYFVYSAPPAYRK----DK----D----------------------YPLIWDK 346 (617)
Q Consensus 300 ~~l~h~~~d~~~---~L~el~RvLrPGG~Liis~p~~~~~----~~----~----------------------~~~~W~~ 346 (617)
.+++|+. ++.. +++++.++|||||+++++....... .. . ....-++
T Consensus 195 ~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 195 GLNIYEP-DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273 (305)
T ss_dssp SSGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred ChhhhcC-CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence 8888876 4544 7999999999999999987422110 00 0 0012456
Q ss_pred HHHHHHHcCceEEEEe
Q 039518 347 LVNLTTAMCWKLIARK 362 (617)
Q Consensus 347 le~La~~~gw~~v~~~ 362 (617)
+.+++++.||+.+...
T Consensus 274 ~~~~l~~aGF~~v~~~ 289 (305)
T 3ocj_A 274 TRAQLEEAGFTDLRFE 289 (305)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCEEEEEE
Confidence 8899999999998765
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=133.51 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=100.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC---CCCC-CCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL---PYPS-SSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L---pf~d-~sFDlV~~s~~l~ 303 (617)
++.+|||||||+|.++..+++.+. .++++|+++.+++.|+++ ..+.+...+...+ ++.. ++||+|+++.+++
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 346799999999999999999865 678889999999999998 4566777776555 5444 4599999998776
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC-----------------------ChhhHHHHHHHHHHcCceEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD-----------------------YPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~-----------------------~~~~W~~le~La~~~gw~~v~ 360 (617)
..++..+++++.++|||||+++++++........ .....+++.++++++||+++.
T Consensus 128 --~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 128 --HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp --SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred --hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 4589999999999999999999998743221110 001246689999999999887
Q ss_pred Ee
Q 039518 361 RK 362 (617)
Q Consensus 361 ~~ 362 (617)
..
T Consensus 206 ~~ 207 (227)
T 3e8s_A 206 LQ 207 (227)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=133.93 Aligned_cols=124 Identities=17% Similarity=0.197 Sum_probs=100.7
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
+.+|||||||+|.++..++++ +++|+++.+++.|+++ ++.+..+++..+++++++||+|++..+++|+. +
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVD-D 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS-C
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhcc-C
Confidence 567999999999999999876 5679999999999988 57788889989998889999999998887765 8
Q ss_pred hHHHHHHHHHhccCCeEEEEEeCCCCCC---------------CCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 309 DGILLKEVDRVLRPNGYFVYSAPPAYRK---------------DKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 309 ~~~~L~el~RvLrPGG~Liis~p~~~~~---------------~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+..+|+++.++|+|||.++++.+..... ........+++.+++++.||+++...
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 8999999999999999999987643210 00011124568999999999988744
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=138.48 Aligned_cols=137 Identities=18% Similarity=0.238 Sum_probs=106.6
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
...++.+|||||||+|.++..++++... ..++++|+++.+++.|+++ +. ++.+...|+..+++++++||+|+++
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 112 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVC 112 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEE
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEe
Confidence 3456788999999999999999987432 2788899999999998876 33 5788889999999999999999999
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCC--CCCCh---hhH-----------------HHHHHHHHHcCce
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRK--DKDYP---LIW-----------------DKLVNLTTAMCWK 357 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~--~~~~~---~~W-----------------~~le~La~~~gw~ 357 (617)
.+++|+. ++..++.++.++|||||++++.++..... .+... ..| ..+..++++.||+
T Consensus 113 ~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 113 FVLEHLQ-SPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp SCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCE
T ss_pred chhhhcC-CHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCC
Confidence 8887776 78899999999999999999987532110 01111 111 2377789999999
Q ss_pred EEEEee
Q 039518 358 LIARKI 363 (617)
Q Consensus 358 ~v~~~~ 363 (617)
.+....
T Consensus 192 ~v~~~~ 197 (276)
T 3mgg_A 192 KIRVEP 197 (276)
T ss_dssp EEEEEE
T ss_pred eEEEee
Confidence 887543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=140.99 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=90.8
Q ss_pred CCCCeEEEECCCCcHHHHHh----ccCCCcE-EEeeecCCcHHHHHHHHHh-----CC-CcEE--EEecCCCCC------
Q 039518 227 AGVFQVLDVGCGVASFSAFL----LPLDIQT-MSFAPKDGHENQIQFALER-----GI-GAMI--SALSTKQLP------ 287 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~L----a~~gv~~-v~v~~iDis~~~lq~A~er-----g~-~~~~--~~~d~~~Lp------ 287 (617)
.++.+|||||||+|.++..+ +.+...+ +.++++|+|+.|++.|+++ ++ ++.+ ..++.+.++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 46778999999999766533 3322222 2458899999999998876 22 2333 334444443
Q ss_pred CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCC-------------C--CCChhhHHHHHHHHH
Q 039518 288 YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRK-------------D--KDYPLIWDKLVNLTT 352 (617)
Q Consensus 288 f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~-------------~--~~~~~~W~~le~La~ 352 (617)
+++++||+|+++.+++|+. |+..+|++++|+|||||++++..+..... . ......-.++.++++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLD 209 (292)
T ss_dssp TCCCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHH
T ss_pred cCCCceeEEEEeeeeeecC-CHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHH
Confidence 5688999999999887766 89999999999999999999976432100 0 000011234777888
Q ss_pred HcCceEEE
Q 039518 353 AMCWKLIA 360 (617)
Q Consensus 353 ~~gw~~v~ 360 (617)
++||+.+.
T Consensus 210 ~aGf~~~~ 217 (292)
T 2aot_A 210 NLGLKYEC 217 (292)
T ss_dssp HHTCCEEE
T ss_pred HCCCceEE
Confidence 88887664
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=136.48 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=102.2
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
+.+.++.+|||||||+|.++..+++. +. .++++|+++.+++.|+++ + .++.+..+|+.++| ++||+|
T Consensus 60 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v 133 (287)
T 1kpg_A 60 LGLQPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRI 133 (287)
T ss_dssp TTCCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEE
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEE
Confidence 34567788999999999999999854 44 788899999999999886 3 25778888887776 789999
Q ss_pred Eecccccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCC-------CC-------------------ChhhHHHHHH
Q 039518 297 HCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-------KD-------------------YPLIWDKLVN 349 (617)
Q Consensus 297 ~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-------~~-------------------~~~~W~~le~ 349 (617)
++..+++|+. +++..+++++.|+|||||.+++.++...... +. ....-+++.+
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 213 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQE 213 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHH
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHH
Confidence 9999888885 4788999999999999999999875321100 00 0001345788
Q ss_pred HHHHcCceEEEEe
Q 039518 350 LTTAMCWKLIARK 362 (617)
Q Consensus 350 La~~~gw~~v~~~ 362 (617)
++++.||+++...
T Consensus 214 ~l~~aGf~~~~~~ 226 (287)
T 1kpg_A 214 CASANGFTVTRVQ 226 (287)
T ss_dssp HHHTTTCEEEEEE
T ss_pred HHHhCCcEEEEEE
Confidence 8889999988743
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-14 Score=152.50 Aligned_cols=133 Identities=12% Similarity=0.168 Sum_probs=103.4
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEE---EEecCCCCCCCCCCeeEEEeccc
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMI---SALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~---~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
...++.+|||||||+|.++..|++++. .++++|+++.+++.|++++.+... ...+.+.+|+++++||+|+++.+
T Consensus 104 ~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v 180 (416)
T 4e2x_A 104 LTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANT 180 (416)
T ss_dssp TCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESC
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECCh
Confidence 345677899999999999999999876 678889999999999998765432 12334556777899999999999
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCC-------CCC----CCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPA-------YRK----DKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~-------~~~----~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
++|+. ++..+|+++.|+|||||++++..|.. .+. ........+.+.+++++.||+++..
T Consensus 181 l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 181 LCHIP-YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp GGGCT-THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred HHhcC-CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 88886 89999999999999999999987641 111 1111111356899999999998864
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-13 Score=130.39 Aligned_cols=130 Identities=13% Similarity=0.185 Sum_probs=103.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC--CCCCCCCeeEEEeccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ--LPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~--Lpf~d~sFDlV~~s~~l~h~ 305 (617)
++.+|||+|||+|.++..+++.+ ..++++|+++.+++.++++.. .+..+|+.. +++++++||+|+++.+++|+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~ 106 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVLEHL 106 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCGGGS
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChhhhc
Confidence 55679999999999999999885 378889999999999987753 567778765 67788899999999888877
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeCCCCC------------CCC---------CChhhHHHHHHHHHHcCceEEEEee
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAPPAYR------------KDK---------DYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p~~~~------------~~~---------~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
. ++..++.++.++|+|||+++++.|.... ... ......+++.+++++.||+++....
T Consensus 107 ~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 184 (230)
T 3cc8_A 107 F-DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184 (230)
T ss_dssp S-CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred C-CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence 6 7899999999999999999999865211 100 0111245689999999999887544
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=134.50 Aligned_cols=115 Identities=15% Similarity=0.226 Sum_probs=93.1
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALST 283 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~ 283 (617)
.+.+.+.+.+... ..++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +.++.+..+|+
T Consensus 22 ~~~~~~~~~l~~~-----~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~ 93 (246)
T 1y8c_A 22 KWSDFIIEKCVEN-----NLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG
T ss_pred HHHHHHHHHHHHh-----CCCCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 4445555555322 12456799999999999999998865 678889999999998876 34688888999
Q ss_pred CCCCCCCCCeeEEEecc-cccccc--cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 284 KQLPYPSSSFEMVHCSR-CRVDWH--ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 284 ~~Lpf~d~sFDlV~~s~-~l~h~~--~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..++++ ++||+|+++. +++|+. +++..+|+++.++|+|||.++++.+
T Consensus 94 ~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 94 SNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 888877 8899999998 888874 4678899999999999999999765
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=133.31 Aligned_cols=99 Identities=23% Similarity=0.231 Sum_probs=87.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||+|||+|.++..+ +.. .++++|+++.+++.|+++..++.+..+|+..+|+++++||+|+++.+++|+.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYP--QKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCS--EEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-
T ss_pred CCCeEEEECCCCCHhHHhC---CCC--eEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-
Confidence 5678999999999999888 331 6788899999999999987678888999999999999999999998887765
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++..+++++.++|||||.+++++++
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 110 DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 8999999999999999999999864
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=132.60 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=84.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC----------CcEEEEecCCCCCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI----------GAMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~----------~~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
++.+|||||||+|.++..|++++.. ..++++|+++.+++.|+++.. ++.+..+|+..+++++++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 4457999999999999999987642 278889999999999988721 57888888887777778999999
Q ss_pred ecccccccccch--HHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHAND--GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~--~~~L~el~RvLrPGG~Liis~ 330 (617)
|+.+++|+. ++ ..+++++.++|||||.++++.
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 108 VIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 999888875 44 789999999999999777654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=138.35 Aligned_cols=101 Identities=26% Similarity=0.450 Sum_probs=89.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||||||+|.++..|++.+. .++++|+++.+++.|+++.... +..+|+..+++++++||+|++..+++|+..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 456799999999999999998864 6788899999999999886543 778899999998999999999888888876
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++..+|+++.++|||||.++++.++
T Consensus 130 ~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 130 NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 7999999999999999999998863
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=135.99 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=88.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.++.+|||+|||+|.++..+++++. .++++|+++.+++.|+++ ..++.+..+|++.+|+++++||+|+++.++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 4667899999999999999998864 678889999999999987 346888999999999999999999999877
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEE
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
+++. ++..++.++.++|||||++++.
T Consensus 115 ~~~~-~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP-DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT-THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC-CHHHHHHHHHHHCCCCcEEEEE
Confidence 7665 8899999999999999999987
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-13 Score=130.79 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=85.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecc-cccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSR-CRVDWH 306 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~-~l~h~~ 306 (617)
++.+|||+|||+|.++..+++++. .++++|+++.+++.|+++..++.+..+|+..+++ +++||+|+|+. +++|+.
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCC
T ss_pred CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcC
Confidence 456799999999999999998765 6788899999999999987778999999988887 77899999755 566653
Q ss_pred --cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 307 --ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 307 --~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++...+|+++.++|+|||.++++.+
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 4567899999999999999999864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-13 Score=138.12 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=83.6
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC--------CCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG--------IGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg--------~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
+|||||||+|.++..|++++. .++++|+++.+++.|+++. .++.+..+|+..+++ +++||+|+|+..+
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS 160 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence 599999999999999999865 5778899999999998762 458899999999987 6889999987666
Q ss_pred ccccc--chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 303 VDWHA--NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 303 ~h~~~--d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
+++.. +...+|+++.++|||||+|++.++.
T Consensus 161 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 161 INELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp HTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 66653 3578999999999999999998754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-14 Score=140.83 Aligned_cols=134 Identities=10% Similarity=-0.015 Sum_probs=97.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------C--------------------------
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------I-------------------------- 274 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------~-------------------------- 274 (617)
.++.+|||||||+|.++..++..+.. .|+++|+|+.+++.|+++. .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~--~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhc--ceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 46778999999999888777776643 6889999999999887641 0
Q ss_pred --Cc-EEEEecCCC-CCC---CCCCeeEEEecccccccc---cchHHHHHHHHHhccCCeEEEEEeCCCCC--C-C----
Q 039518 275 --GA-MISALSTKQ-LPY---PSSSFEMVHCSRCRVDWH---ANDGILLKEVDRVLRPNGYFVYSAPPAYR--K-D---- 337 (617)
Q Consensus 275 --~~-~~~~~d~~~-Lpf---~d~sFDlV~~s~~l~h~~---~d~~~~L~el~RvLrPGG~Liis~p~~~~--~-~---- 337 (617)
.+ .+..+|+.. .|+ ..++||+|+++.+++|.. ++...+++++.|+|||||+|++++..... . .
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~ 211 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 211 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence 01 266778766 344 357899999999888753 35578999999999999999999742110 0 0
Q ss_pred CCChhhHHHHHHHHHHcCceEEEEe
Q 039518 338 KDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 338 ~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
......-+++.+++++.||+++...
T Consensus 212 ~~~~~~~~~l~~~l~~aGF~i~~~~ 236 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAGFDIEQLL 236 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eccccCHHHHHHHHHHCCCEEEEEe
Confidence 0001124468899999999988643
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-13 Score=136.78 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=85.6
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
+.+.++.+|||||||+|.++..++++ +. .++++|+++.+++.|+++ +. ++.+..+|+.++ +++||+|
T Consensus 68 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v 141 (302)
T 3hem_A 68 LNLEPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRI 141 (302)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEE
T ss_pred cCCCCcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEE
Confidence 34567788999999999999999987 53 688899999999999876 43 377888888776 6899999
Q ss_pred Eeccccccccc--------chHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHA--------NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~--------d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++.+++|+.+ +...+++++.++|||||.+++.+.
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99998888741 237899999999999999999875
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=131.19 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI---GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~---~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.++.+|||+|||+|.++..|++.+ ..++++|+++.+++.|+++.. ++.+..+|+..++ ++++||+|+|+.+++
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLY 125 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence 355679999999999999999875 378899999999999998742 5788999998888 688999999999888
Q ss_pred ccccch---HHHHHHHHHhccCCeEEEEEeCC
Q 039518 304 DWHAND---GILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 304 h~~~d~---~~~L~el~RvLrPGG~Liis~p~ 332 (617)
|+. ++ ..++.++.++|||||+++++++.
T Consensus 126 ~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 126 YLE-DMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp GSS-SHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hCC-CHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 776 44 56799999999999999998753
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=124.77 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=98.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +. ++.+..+|+..+++ +++||+|+++.++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchh
Confidence 455799999999999999998865 678889999999988764 44 57888899988888 8899999999888
Q ss_pred cccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCC--CC---CChhhHHHHHHHHHHcCceEEEEeee
Q 039518 303 VDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRK--DK---DYPLIWDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~--~~---~~~~~W~~le~La~~~gw~~v~~~~~ 364 (617)
+|+. ++...++.++.++|+|||++++..+..... .+ .....-+++.++++. |+++.....
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 7765 367889999999999999988865321111 00 000012346666665 888876544
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=138.54 Aligned_cols=114 Identities=24% Similarity=0.388 Sum_probs=93.4
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcE
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAM 277 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~ 277 (617)
..+.+.+.+.++.. ++.+|||||||+|.++..|++.+. .++++|+++.+++.|+++. .++.
T Consensus 43 ~~~~~~l~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 112 (293)
T 3thr_A 43 AEYKAWLLGLLRQH-------GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWV 112 (293)
T ss_dssp HHHHHHHHHHHHHT-------TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCE
T ss_pred HHHHHHHHHHhccc-------CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceee
Confidence 45556666665432 345799999999999999999876 6788899999999998652 2466
Q ss_pred EEEecCCCCC---CCCCCeeEEEec-ccccccccc-------hHHHHHHHHHhccCCeEEEEEeC
Q 039518 278 ISALSTKQLP---YPSSSFEMVHCS-RCRVDWHAN-------DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 278 ~~~~d~~~Lp---f~d~sFDlV~~s-~~l~h~~~d-------~~~~L~el~RvLrPGG~Liis~p 331 (617)
+..++...++ +++++||+|+|. .+++|+. + ...+++++.++|||||+++++.+
T Consensus 113 ~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 113 IEEANWLTLDKDVPAGDGFDAVICLGNSFAHLP-DSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEECCGGGHHHHSCCTTCEEEEEECTTCGGGSC-CSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EeecChhhCccccccCCCeEEEEEcChHHhhcC-ccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7788888877 888999999998 7787776 5 78899999999999999999876
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-13 Score=127.55 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=97.5
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
+|||||||+|.++..+++.+. .++++|+++.+++.|+++ +.++.+..+|+..+++++++||+|+++. .|+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCC
Confidence 699999999999999998865 678889999999998876 5578888899988888889999999864 3443
Q ss_pred -cchHHHHHHHHHhccCCeEEEEEeCCCCCC-----CC---CChhhHHHHHHHHHHcCceEEEEee
Q 039518 307 -ANDGILLKEVDRVLRPNGYFVYSAPPAYRK-----DK---DYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 307 -~d~~~~L~el~RvLrPGG~Liis~p~~~~~-----~~---~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
++...++.++.++|+|||+++++++..... .+ .....-+++.++++ ||+++....
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEE
Confidence 467889999999999999999997643211 01 01111344777776 999887543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-13 Score=128.99 Aligned_cols=100 Identities=27% Similarity=0.367 Sum_probs=86.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
+.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +.++.+..+|+..+++++++||+|+++.++++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 56799999999999999998876 678889999999998876 46688999999888888889999999877333
Q ss_pred cc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 305 WH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 305 ~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+. .++..++.++.++|+|||.+++..+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 33 4678899999999999999999875
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=135.03 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=87.6
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
+.+.++.+|||||||+|.++..+++. +. .++++|+++.+++.|+++ +. .+.+..+|+.++| ++||+|
T Consensus 86 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v 159 (318)
T 2fk8_A 86 LDLKPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRI 159 (318)
T ss_dssp SCCCTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEE
T ss_pred cCCCCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEE
Confidence 34567788999999999999999887 54 678889999999999886 33 3778888887775 789999
Q ss_pred Eecccccccc-cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 297 HCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 297 ~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++..+++|+. +++..++.++.++|||||.+++.++.
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999888875 47899999999999999999998764
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-13 Score=134.27 Aligned_cols=104 Identities=22% Similarity=0.226 Sum_probs=86.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCC-CCCCeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPY-PSSSFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf-~d~sFDlV~~s 299 (617)
.++.+|||||||+|.++..+++.+.. .++++|+++.+++.|+++ +. ++.+..+|+..+++ ++++||+|++.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 45678999999999999998877532 678899999999999876 22 46888889988888 68899999999
Q ss_pred cccccc---ccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 300 RCRVDW---HANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 300 ~~l~h~---~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.++++. .+++..+|.++.++|||||+++++++.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 877652 246788999999999999999999864
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-13 Score=138.17 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-------cEEEEecC------CCC--C
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-------AMISALST------KQL--P 287 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-------~~~~~~d~------~~L--p 287 (617)
.++.+|||||||+|..+..++..+.. .++++|+|+.+++.|+++ +.. +.+.+.++ +.+ +
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~ 124 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV 124 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence 35788999999999766655555432 688999999999999886 221 34556655 323 3
Q ss_pred CCCCCeeEEEecccccccc--cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 288 YPSSSFEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 288 f~d~sFDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++++||+|+|..++++.. ++...+|+++.|+|||||+|+++++
T Consensus 125 ~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 125 FYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp CCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 5678999999998765532 3567899999999999999999886
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-13 Score=136.16 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=85.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-------CCCcEEEEecCCCCCCCC------CCee
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-------GIGAMISALSTKQLPYPS------SSFE 294 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-------g~~~~~~~~d~~~Lpf~d------~sFD 294 (617)
++.+|||||||+|.++..|++.......++++|+++.+++.|+++ ..++.+.++|++.+++++ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 566799999999999999995311123678899999999999886 457889999999998877 8999
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEE
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
+|+++.+++|+ ++..++.++.++|||||.+++.
T Consensus 116 ~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 116 MITAVECAHWF--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEE
Confidence 99999877776 8999999999999999999984
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-13 Score=127.43 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=85.2
Q ss_pred CCCeEEEECCCCcHH-HHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASF-SAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~-a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.+ ...++..+. .++++|+++.+++.|+++ +.++.+..+|+..+++++++||+|+++.++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 456799999999987 445555554 678889999999988765 566888899999999989999999999888
Q ss_pred cccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 303 VDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+|+. +++..+++++.++|||||+++++..
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8874 5688899999999999999999875
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-13 Score=126.03 Aligned_cols=102 Identities=15% Similarity=0.065 Sum_probs=78.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCCCC-CCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQLP-YPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~Lp-f~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..|++++. .++++|+++.+++.|+++ + .++.+...+.+.++ +.+++||+|+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 4567899999999999999998843 678889999999999876 4 35677776666653 4578899999873
Q ss_pred ccccc--------ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDW--------HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~--------~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..++. ..+...++.++.++|||||.+++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 33222 23456789999999999999999874
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=128.32 Aligned_cols=118 Identities=18% Similarity=0.292 Sum_probs=97.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC-CCCCCC-CCCeeEEEeccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALST-KQLPYP-SSSFEMVHCSRCRVDW 305 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~-~~Lpf~-d~sFDlV~~s~~l~h~ 305 (617)
++.+|||||||+|.++..|++.+. .++++|+++.+++.|+++..++.+..+|+ +.+|++ +++||+|+++
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 456799999999999999999864 67888999999999999977889999998 678888 8999999986
Q ss_pred ccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeee
Q 039518 306 HANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 306 ~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~ 364 (617)
.++..++.++.++|||||.++...... . ...+.+.+++.||+.+.....
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~~~~~~----~-----~~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLYVGPRL----N-----VPEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEEEESSS----C-----CTHHHHHHHHTTCEEEEEEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeCCcC----C-----HHHHHHHHHHCCCeEEEEEee
Confidence 266788999999999999999433211 0 234778889999998876544
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.4e-13 Score=127.55 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=86.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
++.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++. .++.+..+|+..+++++++||+|+++.++.+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 4567999999999999999988753 6788899999999999874 3578889999889988899999999876654
Q ss_pred cc--------------cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 305 WH--------------ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 305 ~~--------------~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.. .+...++.++.++|||||.+++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 42 3457899999999999999999886
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-13 Score=134.42 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=97.1
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALST 283 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~ 283 (617)
.+.+.+.+.+. .+|.+|||||||+|..+.++++..+. +++++|+++.+++.|+++ +..+.+..++.
T Consensus 48 ~~m~~~a~~~~--------~~G~rVLdiG~G~G~~~~~~~~~~~~--~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a 117 (236)
T 3orh_A 48 PYMHALAAAAS--------SKGGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW 117 (236)
T ss_dssp HHHHHHHHHHT--------TTCEEEEEECCTTSHHHHHHTTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH
T ss_pred HHHHHHHHhhc--------cCCCeEEEECCCccHHHHHHHHhCCc--EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehH
Confidence 45555555543 35667999999999999999887643 788999999999999986 44566777765
Q ss_pred CCC--CCCCCCeeEEEe-----cccccccccchHHHHHHHHHhccCCeEEEEEeCCC---CCCC--CCChhhHH-HHHHH
Q 039518 284 KQL--PYPSSSFEMVHC-----SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPA---YRKD--KDYPLIWD-KLVNL 350 (617)
Q Consensus 284 ~~L--pf~d~sFDlV~~-----s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~---~~~~--~~~~~~W~-~le~L 350 (617)
+.+ ++++++||.|+. ....+|.. ++..++.++.|+|||||.|++..... .... ......+. .....
T Consensus 118 ~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~-~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (236)
T 3orh_A 118 EDVAPTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPA 196 (236)
T ss_dssp HHHGGGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHH
T ss_pred HhhcccccccCCceEEEeeeecccchhhhc-chhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHH
Confidence 443 578899999974 33334433 78899999999999999998853100 0000 01111122 24556
Q ss_pred HHHcCceEEEE
Q 039518 351 TTAMCWKLIAR 361 (617)
Q Consensus 351 a~~~gw~~v~~ 361 (617)
+.+.||+....
T Consensus 197 L~eaGF~~~~i 207 (236)
T 3orh_A 197 LLEAGFRRENI 207 (236)
T ss_dssp HHHHTCCGGGE
T ss_pred HHHcCCeEEEE
Confidence 67789986553
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-13 Score=131.61 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=100.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC--C-----------------------------
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI--G----------------------------- 275 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~--~----------------------------- 275 (617)
.++.+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++.. +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 3567899999999999999888765 478899999999999987622 1
Q ss_pred ---c-EEEEecCCCCC-CCC---CCeeEEEecccccccc---cchHHHHHHHHHhccCCeEEEEEeCCCCC--CC-----
Q 039518 276 ---A-MISALSTKQLP-YPS---SSFEMVHCSRCRVDWH---ANDGILLKEVDRVLRPNGYFVYSAPPAYR--KD----- 337 (617)
Q Consensus 276 ---~-~~~~~d~~~Lp-f~d---~sFDlV~~s~~l~h~~---~d~~~~L~el~RvLrPGG~Liis~p~~~~--~~----- 337 (617)
+ .+..+|+..++ +++ ++||+|+++.++++.. .++..+|.++.++|||||+|+++++.... ..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 212 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence 5 77888887654 355 8999999998887433 36788999999999999999998742210 00
Q ss_pred CCChhhHHHHHHHHHHcCceEEEEe
Q 039518 338 KDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 338 ~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
......-+.+.+++++.||+++...
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cccccCHHHHHHHHHHCCCEEEEEE
Confidence 0001113468899999999988754
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-13 Score=134.67 Aligned_cols=133 Identities=13% Similarity=0.075 Sum_probs=92.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---------------------------------
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI--------------------------------- 274 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~--------------------------------- 274 (617)
++.+|||||||+|.++..++.... ..++++|+++.+++.|+++..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 567899999999995544443222 278899999999998877311
Q ss_pred --CcEEEEecCCC-CCC-----CCCCeeEEEecccccccc---cchHHHHHHHHHhccCCeEEEEEeCCC-CC-CCC---
Q 039518 275 --GAMISALSTKQ-LPY-----PSSSFEMVHCSRCRVDWH---ANDGILLKEVDRVLRPNGYFVYSAPPA-YR-KDK--- 338 (617)
Q Consensus 275 --~~~~~~~d~~~-Lpf-----~d~sFDlV~~s~~l~h~~---~d~~~~L~el~RvLrPGG~Liis~p~~-~~-~~~--- 338 (617)
.+.+..+|+.. +|+ ++++||+|+|+.++++.. +++..+|+++.|+|||||+|+++.... .+ ...
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~ 228 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 228 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence 02345557766 664 356799999998877743 368899999999999999999974211 00 000
Q ss_pred --CChhhHHHHHHHHHHcCceEEEEe
Q 039518 339 --DYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 339 --~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
.....-+.+.+++++.||+++...
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHcCCeEEEee
Confidence 001124568899999999988743
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-12 Score=129.12 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=85.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
++.+|||+|||+|.++..|++++. .++++|+++.+++.|+++ +.++.+..+|+..+++ +++||+|+++.+++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchh
Confidence 455799999999999999999865 678889999999988775 5578899999988887 78899999998887
Q ss_pred ccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 304 DWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 304 h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|+. ++...++.++.++|+|||.+++...
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 775 3456899999999999999888653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-11 Score=118.42 Aligned_cols=121 Identities=15% Similarity=0.060 Sum_probs=94.0
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
..++.+|||+|||+|.++..+++.+.. ..++++|+++.+++.|+++ +. ++.+..+|+.......++||+|++..
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~ 116 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG 116 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence 345678999999999999999988632 2788899999999999875 43 47788888755443447799999876
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
... +...++.++.++|+|||.+++..+.. ...+.+.+.+++.||...
T Consensus 117 ~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~ 163 (204)
T 3e05_A 117 SGG----MLEEIIDAVDRRLKSEGVIVLNAVTL--------DTLTKAVEFLEDHGYMVE 163 (204)
T ss_dssp CTT----CHHHHHHHHHHHCCTTCEEEEEECBH--------HHHHHHHHHHHHTTCEEE
T ss_pred CCc----CHHHHHHHHHHhcCCCeEEEEEeccc--------ccHHHHHHHHHHCCCcee
Confidence 432 67899999999999999999987521 225568888899999433
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=124.21 Aligned_cols=111 Identities=17% Similarity=0.242 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||||||+|.++..++ . .++++|+++. .+.+..+|+..+|+++++||+|+++.+++ + .
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~---~---~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~-~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR---N---PVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-G-T 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC---S---CEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEEEESCCC-S-S
T ss_pred CCCeEEEECCcCCHHHHHhh---c---cEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEEEehhcc-c-c
Confidence 45679999999999999884 1 4566677765 46678889988999899999999998774 4 5
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
++..++.++.++|+|||+++++++..... .-+.+.+++++.||+++...
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGCS------CHHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCCCC------CHHHHHHHHHHCCCEEEEEe
Confidence 89999999999999999999987532211 14568899999999988744
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-12 Score=121.40 Aligned_cols=125 Identities=14% Similarity=0.222 Sum_probs=95.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCCCCeeEEEeccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPSSSFEMVHCSRC 301 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlV~~s~~ 301 (617)
+.+|||||||+|.++..+++.... ..+.++|+++.+++.|+++ +. ++.+..+|+..++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 456999999999999999887532 2688899999999988875 43 5788889988877 77889999998753
Q ss_pred cccccc--------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 302 RVDWHA--------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 302 l~h~~~--------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
.+|.. ....++.++.++|+|||.+++.+.. ....+.+.+++++.||+.+....
T Consensus 121 -~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 121 -DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--------RGLFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--------HHHHHHHHHHHHHHTCEEEEEES
T ss_pred -CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--------HHHHHHHHHHHHHCCCeeeeccc
Confidence 23321 1257999999999999999998631 11245577778888998876443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=129.65 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=81.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----CCcEEEEecCCCC--CCCCCCeeEEEe-cc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----IGAMISALSTKQL--PYPSSSFEMVHC-SR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~~~~~~~~d~~~L--pf~d~sFDlV~~-s~ 300 (617)
++.+|||||||+|.++..|++.+.. .++++|+++.+++.|+++. .++.+..+|++++ ++++++||+|++ .+
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4567999999999999999776542 7889999999999998863 5578888888887 888999999998 44
Q ss_pred cccccc----cchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWH----ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~----~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+ +.. .+...++.++.|+|||||+|++..
T Consensus 138 ~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 138 PL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 32 211 234578999999999999999864
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=128.32 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=94.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCC--CCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLP--YPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lp--f~d~sFDlV~~s 299 (617)
++.+|||+|||+|.++..+++++.. .++++|+++.+++.|+++ +. ++.+..+|+.+++ +++++||+|+++
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 5678999999999999999988653 788999999999999876 43 3788888887765 557899999997
Q ss_pred cccccc-------------------ccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDW-------------------HANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~-------------------~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
...... ..+...++.++.++|||||.+++..++.. ..++...+++.+|....
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER---------LLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT---------HHHHHHHHHHTTEEEEE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH---------HHHHHHHHHHCCCceEE
Confidence 433222 01245799999999999999999765321 45677788888988765
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=130.97 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=82.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----------------------------------
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------------------------------- 273 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------------------------------- 273 (617)
++.+|||||||+|.++..|+++... ..++++|+++.+++.|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 5678999999999999999987321 27889999999999998762
Q ss_pred -----------------------------CCcEEEEecCCCCC-----CCCCCeeEEEecccccccc-----cchHHHHH
Q 039518 274 -----------------------------IGAMISALSTKQLP-----YPSSSFEMVHCSRCRVDWH-----ANDGILLK 314 (617)
Q Consensus 274 -----------------------------~~~~~~~~d~~~Lp-----f~d~sFDlV~~s~~l~h~~-----~d~~~~L~ 314 (617)
.++.+..+|....+ +.+++||+|+|..++++++ ++...+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 24677777765443 5678999999998775542 25678999
Q ss_pred HHHHhccCCeEEEEEeC
Q 039518 315 EVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 315 el~RvLrPGG~Liis~p 331 (617)
+++++|+|||+|++...
T Consensus 205 ~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHEEEEEEEEEECC
T ss_pred HHHHHhCCCcEEEEecC
Confidence 99999999999999754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=129.04 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=82.5
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHH------HHHHHHHh----C--CCcEEEEec---CCCCCCC
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHEN------QIQFALER----G--IGAMISALS---TKQLPYP 289 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~------~lq~A~er----g--~~~~~~~~d---~~~Lpf~ 289 (617)
+.++.+|||||||+|.++..++++ +.. ..++++|+++. +++.|+++ + .++.+..+| ...+|++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 119 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA 119 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence 456778999999999999999987 332 26788899886 77887765 2 247777777 4566778
Q ss_pred CCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 SSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++||+|+++.+++|+. ++..+++.+.++++|||++++.+.
T Consensus 120 ~~~fD~v~~~~~l~~~~-~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFA-SANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp TCCCSEEEEESCGGGSS-CHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CCCEEEEEEccchhhCC-CHHHHHHHHHHHhCCCCEEEEEEe
Confidence 89999999999888776 677777777777888999999864
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=120.68 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=95.0
Q ss_pred CCCCeEEEECCC-CcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCC-CCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCG-VASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQL-PYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCG-tG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~L-pf~d~sFDlV~~s~ 300 (617)
.++.+|||+||| +|.++..+++.. ...++++|+++.+++.|+++ +.++.+..+|+..+ ++++++||+|+++.
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 356789999999 999999998873 23678889999999998865 55788888886433 45678999999875
Q ss_pred cccccc------------------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 301 CRVDWH------------------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 301 ~l~h~~------------------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
..++.. +....++.++.++|||||++++..+.. ......+.+++++.||.....
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-------EKLLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-------HhHHHHHHHHHHHcCCceEEE
Confidence 443322 113678999999999999999976521 122456888889999976653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-11 Score=117.25 Aligned_cols=141 Identities=17% Similarity=0.135 Sum_probs=101.4
Q ss_pred ccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-c
Q 039518 202 FKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-A 276 (617)
Q Consensus 202 F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~ 276 (617)
|..+.......+.+.+... ..++.+|||+|||+|.++..+++.+.. .+.++|+++.+++.|+++ +.. +
T Consensus 39 f~~~~~~~~~~~~~~l~~~-----~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v 111 (205)
T 3grz_A 39 FGTGNHQTTQLAMLGIERA-----MVKPLTVADVGTGSGILAIAAHKLGAK--SVLATDISDESMTAAEENAALNGIYDI 111 (205)
T ss_dssp ---CCHHHHHHHHHHHHHH-----CSSCCEEEEETCTTSHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCCCccHHHHHHHHHHh-----ccCCCEEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCce
Confidence 4444444444444444321 134567999999999999999887542 678899999999999876 443 7
Q ss_pred EEEEecCCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCc
Q 039518 277 MISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCW 356 (617)
Q Consensus 277 ~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw 356 (617)
.+..+|+... .+++||+|+++..++ ....+++++.++|+|||++++++... ...+.+.+++++.||
T Consensus 112 ~~~~~d~~~~--~~~~fD~i~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~~~~~Gf 177 (205)
T 3grz_A 112 ALQKTSLLAD--VDGKFDLIVANILAE----ILLDLIPQLDSHLNEDGQVIFSGIDY--------LQLPKIEQALAENSF 177 (205)
T ss_dssp EEEESSTTTT--CCSCEEEEEEESCHH----HHHHHGGGSGGGEEEEEEEEEEEEEG--------GGHHHHHHHHHHTTE
T ss_pred EEEecccccc--CCCCceEEEECCcHH----HHHHHHHHHHHhcCCCCEEEEEecCc--------ccHHHHHHHHHHcCC
Confidence 7888877554 468999999876443 24678999999999999999975321 124568889999999
Q ss_pred eEEEEee
Q 039518 357 KLIARKI 363 (617)
Q Consensus 357 ~~v~~~~ 363 (617)
+.+....
T Consensus 178 ~~~~~~~ 184 (205)
T 3grz_A 178 QIDLKMR 184 (205)
T ss_dssp EEEEEEE
T ss_pred ceEEeec
Confidence 9887543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=130.17 Aligned_cols=103 Identities=11% Similarity=-0.043 Sum_probs=81.6
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCC-----CCCCeeEEEec
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPY-----PSSSFEMVHCS 299 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf-----~d~sFDlV~~s 299 (617)
.+.++.+|||||||+|.++..|++++. .++++|+|+.|++.|+++.... ....+...++. .+++||+|+++
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~ 117 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLND 117 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEE
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEh
Confidence 345677899999999999999999875 6788899999999999885432 22333444433 25789999999
Q ss_pred ccccccc-cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 300 RCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 300 ~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.+++|+. ++...++.++.++| |||.++++.+.
T Consensus 118 ~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 118 RLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 8888876 45677999999999 99999999753
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.3e-12 Score=119.77 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=91.5
Q ss_pred ChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEE
Q 039518 205 GAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMIS 279 (617)
Q Consensus 205 ~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~ 279 (617)
..+...+.+.+.+..... .++.+|||+|||+|.++..+++++.. .++++|+++.+++.|+++ +. ++.+.
T Consensus 25 ~~~~~~~~l~~~l~~~~~----~~~~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~ 98 (189)
T 3p9n_A 25 TTDRVRESLFNIVTARRD----LTGLAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATLR 98 (189)
T ss_dssp -CHHHHHHHHHHHHHHSC----CTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred CcHHHHHHHHHHHHhccC----CCCCEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence 344555555555543211 24567999999999999988887643 678899999999998875 43 57888
Q ss_pred EecCCCCC--CCCCCeeEEEecccccccccchHHHHHHHHH--hccCCeEEEEEeCC
Q 039518 280 ALSTKQLP--YPSSSFEMVHCSRCRVDWHANDGILLKEVDR--VLRPNGYFVYSAPP 332 (617)
Q Consensus 280 ~~d~~~Lp--f~d~sFDlV~~s~~l~h~~~d~~~~L~el~R--vLrPGG~Liis~p~ 332 (617)
.+|+.+++ +++++||+|+++...++..++...++.++.+ +|+|||.+++..+.
T Consensus 99 ~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 99 RGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp ESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred EccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 88876653 4578999999986554433568889999999 99999999998764
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-12 Score=123.59 Aligned_cols=102 Identities=20% Similarity=0.284 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.++.+|||+|||+|.++..|++++. .++++|+++.+++.|+++ +.++.+..+|+..++++ ++||+|+|....
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~ 115 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFST 115 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCc
Confidence 3566899999999999999998865 678889999999998865 55788999999888865 679999986444
Q ss_pred cccc--cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 303 VDWH--ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 303 ~h~~--~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
+++. ++...++.++.++|+|||.+++..+.
T Consensus 116 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 116 IMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 4433 35678999999999999999998763
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=119.43 Aligned_cols=116 Identities=19% Similarity=0.117 Sum_probs=91.2
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-CcEEEEecCCCCCC---CCCCeeEEEec
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-GAMISALSTKQLPY---PSSSFEMVHCS 299 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-~~~~~~~d~~~Lpf---~d~sFDlV~~s 299 (617)
+.+.+|.+|||||||. + .+|+++.|++.|+++.. ++.+..+|++++++ ++++||+|+|+
T Consensus 8 ~g~~~g~~vL~~~~g~----------------v-~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS----------------S-PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp TTCCTTSEEEEEECTT----------------S-CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred cCCCCCCEEEEecCCc----------------e-eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEEC
Confidence 4567888999999996 1 26999999999998843 48888999988887 78999999999
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhHHHHHHHHHHcCc
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIWDKLVNLTTAMCW 356 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W~~le~La~~~gw 356 (617)
.+++|+..++..++++++|+|||||+|++..|...... .......+++.+++++.||
T Consensus 71 ~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 71 LVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred ChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 88877635889999999999999999999765322111 1111224668899999999
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-12 Score=123.79 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=83.3
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecc-ccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSR-CRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~-~l~ 303 (617)
+.+|||+|||+|.++..+++. ..++++|+++.+++.|+++ +.++.+..+|+..++++ ++||+|++.. +++
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLN 108 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGG
T ss_pred CCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchh
Confidence 457999999999999999887 3788899999999999876 45688889998888876 7899999876 666
Q ss_pred ccc--cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 304 DWH--ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 304 h~~--~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|+. ++...+++++.++|+|||.+++..+
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 663 4567899999999999999999765
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=116.84 Aligned_cols=117 Identities=11% Similarity=0.015 Sum_probs=92.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc-
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA- 307 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~- 307 (617)
+.+|||+|||+|.++..+++++ .++++|+++.+++. ..++.+..+|+.. ++++++||+|+++..+++..+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCC
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCcc
Confidence 4579999999999999999887 67888999999887 4457888888876 667789999999876554332
Q ss_pred -------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEee
Q 039518 308 -------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 308 -------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
+...++.++.+.| |||.+++..+.. ..-+.+.+++++.||+.+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------NRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------GCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------CCHHHHHHHHHHCCCcEEEEEe
Confidence 2357889999999 999999987421 1145688889999999876543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=127.07 Aligned_cols=132 Identities=13% Similarity=0.120 Sum_probs=100.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..++++... ..++++|++ .+++.|+++ +. .+.+..+|+...+++++ ||+|++++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPN-AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcc
Confidence 34567999999999999999887432 278888999 999988875 33 37888889887777665 99999999
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCCC------------------CChhhHHHHHHHHHHcCceEEEE
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK------------------DYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~------------------~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+++++. ++...+|+++.++|+|||++++.++....... .....-+++.+++++.||+.+..
T Consensus 241 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~ 320 (335)
T 2r3s_A 241 FLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL 320 (335)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence 988886 23478999999999999999998764322110 00111345788899999988764
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=119.83 Aligned_cols=123 Identities=11% Similarity=0.156 Sum_probs=92.3
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCCCCeeEEEeccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPSSSFEMVHCSRC 301 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlV~~s~~ 301 (617)
+.+|||||||+|.++..|++.... ..+.++|+++.+++.|+++ +. ++.+..+|+..++ +++++||.|++...
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 446999999999999999887432 2788899999999998875 44 5788888887776 77889999987542
Q ss_pred ccccccc--------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHAN--------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d--------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.+|... ...++.++.++|+|||.|++.+.. ....+.+...++..||.....
T Consensus 118 -~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~--------~~~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 118 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--------RGLFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--------HHHHHHHHHHHHHHTCEEEEE
T ss_pred -CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC--------HHHHHHHHHHHHHCCCccccc
Confidence 233311 367899999999999999998731 112344666677778876653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=122.58 Aligned_cols=135 Identities=7% Similarity=0.003 Sum_probs=97.7
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecC---CCCCCCCCCee
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG---IGAMISALST---KQLPYPSSSFE 294 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~---~~Lpf~d~sFD 294 (617)
..+.++||.+|||+|||+|.++..|++. |... .+.++|+++.+++.++++. .++....++. ...++..+++|
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G-~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRG-RIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTC-EEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence 4578899999999999999999999986 4443 6788899999999888763 2455566554 33456778999
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCC--CCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAY--RKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~--~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+|++.. +.+.+...++.++.++|||||+++++..... ...+.. ....+..+.++..||+.+..
T Consensus 150 vVf~d~---~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~-~~~~~ev~~L~~~GF~l~e~ 214 (233)
T 4df3_A 150 GLYADV---AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPS-EVYKREIKTLMDGGLEIKDV 214 (233)
T ss_dssp EEEECC---CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCC-HHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEec---cCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChH-HHHHHHHHHHHHCCCEEEEE
Confidence 998642 3345678899999999999999999753111 011111 12344555667889998764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-11 Score=139.44 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=88.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----------C-CCcEEEEecCCCCCCCCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----------G-IGAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----------g-~~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
++.+|||||||+|.++..|++++.....++++|+++.+++.|+++ + .++.+.++|+..+++++++||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 456799999999999999999873333788999999999999872 2 35889999999999999999999
Q ss_pred EecccccccccchH--HHHHHHHHhccCCeEEEEEeCCC
Q 039518 297 HCSRCRVDWHANDG--ILLKEVDRVLRPNGYFVYSAPPA 333 (617)
Q Consensus 297 ~~s~~l~h~~~d~~--~~L~el~RvLrPGG~Liis~p~~ 333 (617)
+|..+++|+. ++. .++.++.|+|||| .+++++|+.
T Consensus 801 V~~eVLeHL~-dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 801 TCLEVIEHME-EDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEESCGGGSC-HHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEeCchhhCC-hHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9999888877 333 5899999999999 888888753
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-11 Score=112.79 Aligned_cols=119 Identities=12% Similarity=0.024 Sum_probs=89.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecC-CCCCCCCCCeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALST-KQLPYPSSSFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~-~~Lpf~d~sFDlV~~s 299 (617)
.++.+|||+|||+|.++..+++... ...++++|+++.+++.|+++ +.+ + +...+. +.++..+++||+|+++
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence 4567899999999999999988742 24788999999999999876 443 4 555665 3344333889999998
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.++++ ..+++++.++|+|||.+++..... .....+..+.+..+++...
T Consensus 102 ~~~~~-----~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 102 GGLTA-----PGVFAAAWKRLPVGGRLVANAVTV--------ESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp C-TTC-----TTHHHHHHHTCCTTCEEEEEECSH--------HHHHHHHHHHHHHCCEEEE
T ss_pred CcccH-----HHHHHHHHHhcCCCCEEEEEeecc--------ccHHHHHHHHHHcCCeeEE
Confidence 76654 568999999999999999987421 1244577777888876654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-12 Score=121.60 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCC-CCCCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLP-YPSSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lp-f~d~sFDlV~~ 298 (617)
.++.+|||+|||+|.++..++++ +... .++++|+++.+++.|+++ +. ++.+..+|+..++ +.+++||+|++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENG-RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 45667999999999999999886 2222 788899999999999876 33 5788888887776 66789999998
Q ss_pred ccccccc--------ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDW--------HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~--------~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+..+... ..+...++.++.++|||||++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 7544221 12345799999999999999999874
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-12 Score=121.99 Aligned_cols=133 Identities=16% Similarity=0.106 Sum_probs=93.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH----HH----hCC-CcEEEEecCCCCCCCCCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA----LE----RGI-GAMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A----~e----rg~-~~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
.++.+|||||||+|.++..|+++... ..++++|+++.+++.+ ++ .+. ++.+..+|+.++|+++++ |.|+
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPS-RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTT-EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 35567999999999999999987432 3788999999977753 21 233 578899999999998777 7776
Q ss_pred eccc---cc-ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC--------CCCh-hh-HHHHHHHHHHcCceEEEE
Q 039518 298 CSRC---RV-DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD--------KDYP-LI-WDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 298 ~s~~---l~-h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~--------~~~~-~~-W~~le~La~~~gw~~v~~ 361 (617)
.... .+ |+..++..+++++.|+|||||.++++.....+.. +... .. -+.+..++++.||++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence 3321 11 1334668899999999999999999753222211 1111 11 123788899999998764
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=126.63 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=84.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC--CcEEEEecCCCCCCCC-----CCeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI--GAMISALSTKQLPYPS-----SSFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~--~~~~~~~d~~~Lpf~d-----~sFDlV~~s 299 (617)
.++.+|||||||+|.++..|++.+. .++++|+++.+++.|+++.. ++.+..+|+.++++.. ..||+|+++
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 4566799999999999999998876 57788999999999998743 5788888887765432 349999999
Q ss_pred ccccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.++++.. ++...+++++.++|||||++++.+.
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8776665 2578999999999999999988864
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-12 Score=138.20 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=86.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
++.+|||+|||+|.++..+++++. .++++|+++.+++.|+++ +..+.+...|+...+.++++||+|+++..++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 456799999999999999999864 678889999999998875 5568899999988877778999999987665
Q ss_pred cc----ccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 304 DW----HANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 304 h~----~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
+. ..+...++.++.++|+|||.++++.+.
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 41 235678999999999999999998754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-11 Score=116.25 Aligned_cols=118 Identities=14% Similarity=-0.006 Sum_probs=91.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..+++++. .++++|+++.+++.|+++ +. ++.+..+|+.+......+||+|++..
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 130 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG 130 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence 4566799999999999999998843 678889999999998876 44 47888888876322345799999765
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.+ +.. ++.++.++|||||.++++... ......+.+.+++.|+++...
T Consensus 131 ~~-----~~~-~l~~~~~~LkpgG~lv~~~~~--------~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 131 GG-----SQA-LYDRLWEWLAPGTRIVANAVT--------LESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CC-----CHH-HHHHHHHHSCTTCEEEEEECS--------HHHHHHHHHHHHHHCSEEEEE
T ss_pred cc-----cHH-HHHHHHHhcCCCcEEEEEecC--------cccHHHHHHHHHhCCCcEEEE
Confidence 22 456 999999999999999998752 122455777788888776653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=114.60 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=82.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC---cEEEEecCCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG---AMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~---~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
++.+|||+|||+|.++..+++.+. .+.++|+++.+++.|+++ +.+ +.+...|+.. ++++++||+|+++.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~ 127 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP 127 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECC
Confidence 566799999999999999998833 678889999999998876 443 7788888766 34577899999987
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.+++...+...+++++.++|+|||.+++..+
T Consensus 128 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 128 PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 5544334677899999999999999999886
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=120.64 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=75.0
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHH----HHHHhCCCcEEEEecCCC----CCCCCCCeeE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQ----FALERGIGAMISALSTKQ----LPYPSSSFEM 295 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq----~A~erg~~~~~~~~d~~~----Lpf~d~sFDl 295 (617)
+.+.++.+|||+|||+|.++..|++.... ..++++|+++.+++ .|+++ .++.+..+|+.. .+++ ++||+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~ 129 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDL 129 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeE
Confidence 44567889999999999999999876422 27889999997653 34433 356666777755 3444 78999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|+++. .. ..+...++.++.|+|||||.|+++.+
T Consensus 130 V~~~~-~~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 130 IYQDI-AQ--KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp EEECC-CS--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEec-cC--hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99872 22 22345569999999999999999853
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=130.03 Aligned_cols=132 Identities=11% Similarity=0.094 Sum_probs=99.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC--CCCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL--PYPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L--pf~d~sFDlV~~s 299 (617)
+..+|||||||+|.++..++++.... .++++|+ +.+++.|+++ +. ++.+..+|+... |++ ++||+|+++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV-EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC-EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 34579999999999999999865433 6788898 8999999876 32 478888888765 566 789999999
Q ss_pred cccccccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCC---------------------ChhhHHHHHHHHHHcCce
Q 039518 300 RCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD---------------------YPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 300 ~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~---------------------~~~~W~~le~La~~~gw~ 357 (617)
.++++|.+ +...+|+++.++|+|||++++.++........ .....+++.++++++||+
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 99988873 23578999999999999999987533221110 011244578888888988
Q ss_pred EEEEe
Q 039518 358 LIARK 362 (617)
Q Consensus 358 ~v~~~ 362 (617)
.+...
T Consensus 336 ~v~~~ 340 (363)
T 3dp7_A 336 VEEIQ 340 (363)
T ss_dssp ESCCC
T ss_pred EEEEE
Confidence 77643
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.5e-11 Score=123.42 Aligned_cols=134 Identities=19% Similarity=0.100 Sum_probs=99.8
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCCCCCeeEEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
+...++.+|||||||+|.++..++++.... .++++|+ +.+++.|+++ + ..+.+..+|+. .+++. +||+|+
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~ 240 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDL-SGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYV 240 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEE
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCC-eEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEE
Confidence 334556789999999999999998865432 5677899 8999988865 3 34788888885 45555 799999
Q ss_pred ecccccccccc-hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCC-------------hhhHHHHHHHHHHcCceEEEE
Q 039518 298 CSRCRVDWHAN-DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDY-------------PLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 298 ~s~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~-------------~~~W~~le~La~~~gw~~v~~ 361 (617)
+.+++++|.++ ...+|+++.++|+|||++++.++......+.. ....+++.+++++.||+.+..
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 318 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA 318 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 99999988732 47899999999999999999876332211100 011344888999999998764
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=122.30 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=93.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCC---CCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYP---SSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~---d~sFDlV~~ 298 (617)
.++.+|||||||+|.++..|+..... ..++++|+++.+++.|+++ +. ++.+..+|+++++++ +++||+|+|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 45678999999999999999853222 2688899999999988764 54 578888888777764 678999998
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.. ..+...++.++.++|+|||++++..... .......+.+.++..||+.+.
T Consensus 148 ~~-----~~~~~~~l~~~~~~LkpgG~l~~~~g~~------~~~~~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 148 RA-----VARLSVLSELCLPLVKKNGLFVALKAAS------AEEELNAGKKAITTLGGELEN 198 (240)
T ss_dssp EC-----CSCHHHHHHHHGGGEEEEEEEEEEECC-------CHHHHHHHHHHHHHTTEEEEE
T ss_pred ec-----cCCHHHHHHHHHHhcCCCCEEEEEeCCC------chHHHHHHHHHHHHcCCeEeE
Confidence 64 2468899999999999999999874311 112234567778889998765
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.25 E-value=8.6e-12 Score=125.52 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||||||+|.++..+++... ...++++|+++.+++.|++++.++.+...|...+|+++++||+|+++.+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 456799999999999999988731 12678889999999999999888899999999999999999999986531
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
..+.++.|+|||||.+++.++.
T Consensus 159 ---~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 ---CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp ---CCHHHHHHHEEEEEEEEEEEEC
T ss_pred ---hhHHHHHHhcCCCcEEEEEEcC
Confidence 2589999999999999999874
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.5e-11 Score=121.18 Aligned_cols=124 Identities=7% Similarity=0.072 Sum_probs=96.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ +.. +.+..+|+.+++. +++||+|++..
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~- 200 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY- 200 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC-
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECC-
Confidence 4667999999999999999988764 678889999999998875 443 6788889888876 77899999753
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+.....++.++.++|+|||.+++.+......... ...+.+.+.++..||+....
T Consensus 201 ----p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 201 ----VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPR--EPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp ----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTT--TTHHHHHHHHHHTTCEEEEE
T ss_pred ----chhHHHHHHHHHHHCCCCeEEEEEEeeccccccc--cHHHHHHHHHHHcCCeeEEe
Confidence 2245678999999999999999976432111111 22567888999999987663
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-11 Score=111.36 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=95.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +. ++.+..+|+.. ++++++||+|+++.+
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT- 109 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-
Confidence 456799999999999999988333 678889999999998876 33 57788888766 666789999999875
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeeeeEEE
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIW 368 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~~~Iw 368 (617)
.+...++.++.++ |||.+++..+. .....++.+.+++.||.+...+.....+
T Consensus 110 ----~~~~~~l~~~~~~--~gG~l~~~~~~--------~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 161 (183)
T 2yxd_A 110 ----KNIEKIIEILDKK--KINHIVANTIV--------LENAAKIINEFESRGYNVDAVNVFISYA 161 (183)
T ss_dssp ----SCHHHHHHHHHHT--TCCEEEEEESC--------HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ----ccHHHHHHHHhhC--CCCEEEEEecc--------cccHHHHHHHHHHcCCeEEEEEeeeehh
Confidence 4788899999999 99999998752 1224557888889998877665554444
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=127.81 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=82.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------------CCcEEEEecCCCCC----CC--
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------------IGAMISALSTKQLP----YP-- 289 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------------~~~~~~~~d~~~Lp----f~-- 289 (617)
++.+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++. .++.+.++|+..++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 456799999999999999987643 27888999999999998762 24778889988876 53
Q ss_pred CCCeeEEEeccccccc-c--cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 290 SSSFEMVHCSRCRVDW-H--ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 d~sFDlV~~s~~l~h~-~--~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++||+|+|+.++++. . ++...+|.++.++|||||+++++++
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 4589999999876554 1 3456899999999999999999986
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-11 Score=111.74 Aligned_cols=118 Identities=12% Similarity=0.100 Sum_probs=91.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCC-CCeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPS-SSFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d-~sFDlV~~s 299 (617)
.++.+|||+|||+|.++..+++.+ ..++++|+++.+++.|+++ +. .+.+..+|... ++++ ++||+|++.
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~ 107 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVG 107 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEEC
Confidence 456679999999999999999887 3788899999999998874 33 56777777654 2333 589999987
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.++. +...++.++.++|+|||.+++..+. ......+.+++++.||.+..
T Consensus 108 ~~~~----~~~~~l~~~~~~l~~gG~l~~~~~~--------~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 108 GSGG----ELQEILRIIKDKLKPGGRIIVTAIL--------LETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp CCTT----CHHHHHHHHHHTEEEEEEEEEEECB--------HHHHHHHHHHHHHTTCCCEE
T ss_pred CchH----HHHHHHHHHHHhcCCCcEEEEEecC--------cchHHHHHHHHHHCCCceEE
Confidence 6443 4678999999999999999998752 12245678888899995444
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.9e-11 Score=116.87 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=92.2
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCC----CCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQ----LPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~----Lpf~d~sFDlV 296 (617)
+.+.++.+|||+|||+|.++..|++.... ..+.++|+++.+++.|+++. .++.+..+|+.. +++. ++||+|
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v 147 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVI 147 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEE
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcCC-cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEE
Confidence 34457788999999999999999887322 26888999999999888763 357777888877 7766 789999
Q ss_pred Eecccccccccch---HHHHHHHHHhccCCeEEEEEeCCCCCC-CCCChhhH-HHHHHHHHHcCceEEEEe
Q 039518 297 HCSRCRVDWHAND---GILLKEVDRVLRPNGYFVYSAPPAYRK-DKDYPLIW-DKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 297 ~~s~~l~h~~~d~---~~~L~el~RvLrPGG~Liis~p~~~~~-~~~~~~~W-~~le~La~~~gw~~v~~~ 362 (617)
++ +.. ++ ..++.++.++|||||+++++....... .+...... +.+. ++++.||+.+...
T Consensus 148 ~~-----~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 148 YE-----DVA-QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp EE-----CCC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred EE-----ecC-ChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence 82 222 44 678999999999999999963211111 11111112 3466 7788899877643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=125.40 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=80.8
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEe
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
+++.++.+|||||||+|.++..++.+.. ...++++|+++++++.|+++ |. ++.+..+|+..+| +++||+|++
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence 4567899999999999977655433311 23788899999999999876 54 5788888887775 789999997
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
... .++...+++++.|+|||||.+++...
T Consensus 195 ~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 195 AAL----AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CTT----CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCC----ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 542 35788999999999999999999864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-11 Score=122.25 Aligned_cols=102 Identities=12% Similarity=0.202 Sum_probs=79.3
Q ss_pred CCeEEEECCCCcH----HHHHhccC-CC-c-EEEeeecCCcHHHHHHHHHhC----------------------------
Q 039518 229 VFQVLDVGCGVAS----FSAFLLPL-DI-Q-TMSFAPKDGHENQIQFALERG---------------------------- 273 (617)
Q Consensus 229 g~rVLDIGCGtG~----~a~~La~~-gv-~-~v~v~~iDis~~~lq~A~erg---------------------------- 273 (617)
+.+|||+|||||. ++..|++. +. . ...|.++|+|+.+++.|+++.
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4679999999997 66666554 21 1 238899999999999998751
Q ss_pred --------CCcEEEEecCCCCCCC-CCCeeEEEeccccccccc-chHHHHHHHHHhccCCeEEEEEe
Q 039518 274 --------IGAMISALSTKQLPYP-SSSFEMVHCSRCRVDWHA-NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 274 --------~~~~~~~~d~~~Lpf~-d~sFDlV~~s~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+.+...|+...|++ .++||+|+|.++++++.+ ....++.++++.|+|||+|++..
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1366777888776665 578999999998888762 23789999999999999999953
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=122.88 Aligned_cols=132 Identities=19% Similarity=0.200 Sum_probs=95.7
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
..++.+|||||||+|.++..+++.... ..++++|+ +.+++.|+++ +. ++.+..+|+.+ +++.+ ||+|+++
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~ 255 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLS 255 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCC-CEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEe
Confidence 345678999999999999999987543 26778899 9999988875 33 47888888754 44443 9999999
Q ss_pred ccccccccc-hHHHHHHHHHhccCCeEEEEEeC--CCCCCCCC----------------ChhhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHAN-DGILLKEVDRVLRPNGYFVYSAP--PAYRKDKD----------------YPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p--~~~~~~~~----------------~~~~W~~le~La~~~gw~~v~ 360 (617)
.++++|.+. ...+|+++.++|+|||++++.++ ........ ....-+++.+++++.||+.+.
T Consensus 256 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 256 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 999888732 24899999999999999999876 22111000 001134477888899998876
Q ss_pred E
Q 039518 361 R 361 (617)
Q Consensus 361 ~ 361 (617)
.
T Consensus 336 ~ 336 (374)
T 1qzz_A 336 E 336 (374)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=124.08 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=98.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
..++.+|||||||+|.++..++++.... .++++|+ +.+++.|+++ + ..+.+..+|+. .+++. .||+|++.
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~ 275 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGL-RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIK 275 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCC-eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhh
Confidence 3456789999999999999999875432 6678899 8999888865 3 34788888886 56666 79999999
Q ss_pred ccccccccchH--HHHHHHHHhccCCeEEEEEeCCCCCCCCCC---------------hhhHHHHHHHHHHcCceEEEE
Q 039518 300 RCRVDWHANDG--ILLKEVDRVLRPNGYFVYSAPPAYRKDKDY---------------PLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l~h~~~d~~--~~L~el~RvLrPGG~Liis~p~~~~~~~~~---------------~~~W~~le~La~~~gw~~v~~ 361 (617)
+++++|. +.. .+|+++.++|+|||++++.++......... ....+++.+++++.||+.+..
T Consensus 276 ~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 353 (369)
T 3gwz_A 276 HVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERS 353 (369)
T ss_dssp SCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEE
T ss_pred hhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEE
Confidence 9998887 443 799999999999999999875322111100 011344788999999998874
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-11 Score=119.89 Aligned_cols=133 Identities=11% Similarity=0.050 Sum_probs=86.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCc-HHHHHHH---HHh----CC-CcEEEEecCCCCCCC-CCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGH-ENQIQFA---LER----GI-GAMISALSTKQLPYP-SSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis-~~~lq~A---~er----g~-~~~~~~~d~~~Lpf~-d~sFDlV~ 297 (617)
++.+|||||||+|.++..|+++... ..++++|+| +.+++.| +++ +. ++.+..++++.+|.. .+.+|.|+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTT-EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4556999999999999999865433 378899999 7777666 432 43 478888898888632 24566666
Q ss_pred ecccc----cccccchHHHHHHHHHhccCCeEEEEEeCCCCC-C--------CCCChhhH-H--HHHHHHHHcCceEEEE
Q 039518 298 CSRCR----VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYR-K--------DKDYPLIW-D--KLVNLTTAMCWKLIAR 361 (617)
Q Consensus 298 ~s~~l----~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~-~--------~~~~~~~W-~--~le~La~~~gw~~v~~ 361 (617)
++... .+...+...+|.++.|+|||||.+++....... . .+.....| . ++..++++.||++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence 54321 111123457899999999999999994321110 0 01111112 1 2788889999998764
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=116.21 Aligned_cols=122 Identities=15% Similarity=0.143 Sum_probs=95.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh-----C-CCcEEEEecCCCCCCCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER-----G-IGAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er-----g-~~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
+.++.+|||+|||+|.++..+++. +.. ..+.++|+++.+++.|+++ + .++.+...|+.+.++++++||+|++
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~ 172 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL 172 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE
Confidence 356778999999999999999887 322 2678889999999999876 4 3578888898888888889999997
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
. . .++..++.++.++|+|||.+++..+.. ....++.+.+++.||..+...
T Consensus 173 ~-----~-~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~~~~ 222 (258)
T 2pwy_A 173 D-----L-MEPWKVLEKAALALKPDRFLVAYLPNI--------TQVLELVRAAEAHPFRLERVL 222 (258)
T ss_dssp E-----S-SCGGGGHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHTTTTEEEEEEE
T ss_pred C-----C-cCHHHHHHHHHHhCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceEEEE
Confidence 3 2 366789999999999999999988632 124456666777899876643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.6e-11 Score=117.62 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=78.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----------C-CCcEEEEecCCC-CC--CCCCCe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----------G-IGAMISALSTKQ-LP--YPSSSF 293 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----------g-~~~~~~~~d~~~-Lp--f~d~sF 293 (617)
++.+|||||||+|.++..|++..... .+.++|+++.+++.|+++ + .++.+..+|+.. ++ +++++|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~-~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDT-LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTS-EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCC-eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 44569999999999999999875432 688999999999988643 2 357888889876 66 788999
Q ss_pred eEEEecccccccccc--------hHHHHHHHHHhccCCeEEEEEeC
Q 039518 294 EMVHCSRCRVDWHAN--------DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 294 DlV~~s~~l~h~~~d--------~~~~L~el~RvLrPGG~Liis~p 331 (617)
|.|++... .+|... ...++.++.++|||||.|++.+.
T Consensus 125 D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99986532 223211 14699999999999999999874
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-11 Score=118.73 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=89.2
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHH----HHHHhCCCcEEEEecCCC---CCCCCCCeeE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQ----FALERGIGAMISALSTKQ---LPYPSSSFEM 295 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq----~A~erg~~~~~~~~d~~~---Lpf~d~sFDl 295 (617)
+.+.++.+|||+|||+|.++..|+++ +.. ..+.++|+++.+++ .|+++ .++.+..+|+.. +++.+++||+
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEE
Confidence 34567889999999999999999886 222 26788899977544 44443 567888888866 4556789999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhHHHHHHHHHHcCceEEE
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W~~le~La~~~gw~~v~ 360 (617)
|++... .......++.++.++|||||.++++..+..... ......+.+-.+++++.||+.+.
T Consensus 151 V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 213 (233)
T 2ipx_A 151 IFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE 213 (233)
T ss_dssp EEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEE
T ss_pred EEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEE
Confidence 998543 222235568899999999999999765311000 11111122224666788998876
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.8e-11 Score=114.89 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=80.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +. ++.+..+|....+.++++||+|++..+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA 152 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc
Confidence 4567899999999999999998843 678889999999999876 33 478888888776666789999999887
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++++.+ ++.++|||||+++++.+.
T Consensus 153 ~~~~~~-------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIPT-------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCCT-------HHHHTEEEEEEEEEEECS
T ss_pred hhhhhH-------HHHHhcccCcEEEEEEcC
Confidence 776652 689999999999999874
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=121.57 Aligned_cols=131 Identities=11% Similarity=0.062 Sum_probs=96.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCC-CCCCCeeEEEeccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLP-YPSSSFEMVHCSRC 301 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lp-f~d~sFDlV~~s~~ 301 (617)
+.+|||||||+|.++..++++... ..++++|+ +.+++.|+++ +. .+.+..+|+...+ +..+.||+|+++.+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 678999999999999999987543 35667788 6677777654 43 3788888887765 23456999999999
Q ss_pred cccccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCC------------------CChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDK------------------DYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~------------------~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+++|.+ +...+|+++.++|+|||++++.++....... ......+++.+++++.||+.+..
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 988873 2478999999999999999998743221110 00112345888999999998873
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-11 Score=119.42 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=79.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCC-C--CCCCCeeEEEecc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQL-P--YPSSSFEMVHCSR 300 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~L-p--f~d~sFDlV~~s~ 300 (617)
+.+|||||||+|.++..+++..... .+.++|+++.+++.|+++ +. ++.+..+|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~-~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQ-DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCC-eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 4569999999999999999875433 688899999999888765 43 578888887663 3 6789999999764
Q ss_pred cccccccch--------HHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHAND--------GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~--------~~~L~el~RvLrPGG~Liis~p 331 (617)
. .+|.... ..++.++.|+|||||+|++++.
T Consensus 114 ~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 P-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp C-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred C-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 2 3444221 2599999999999999999874
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=118.00 Aligned_cols=121 Identities=14% Similarity=0.186 Sum_probs=94.0
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh-----CC-CcEEEEecCCCCCCCCCCeeEEE
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER-----GI-GAMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er-----g~-~~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
...++.+|||+|||+|.++..+++. +. ...++++|+++.+++.|+++ +. ++.+..+|+.. ++++++||+|+
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi 184 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVI 184 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEE
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEE
Confidence 4567788999999999999999886 22 12678889999999998876 43 47788888766 66778999999
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+ +. .++..++.++.++|+|||.++++++.. ...+.+.+.++..||..+..
T Consensus 185 ~-----~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 185 A-----DI-PDPWNHVQKIASMMKPGSVATFYLPNF--------DQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp E-----CC-SCGGGSHHHHHHTEEEEEEEEEEESSH--------HHHHHHHHHSGGGTEEEEEE
T ss_pred E-----cC-cCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCeEEEE
Confidence 7 23 367789999999999999999998632 11345666677789887663
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=120.91 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=95.5
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.+|||||||+|.++..++++... ..++++|+ +.+++.|+++ ...+.+..+|+.+ +++ ++||+|++..+++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPS-ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCC-CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhcc
Confidence 67999999999999999887433 26778899 8888888775 2357888888766 555 6799999999998
Q ss_pred cccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCC----------------ChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD----------------YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~----------------~~~~W~~le~La~~~gw~~v~~ 361 (617)
+|.+ +...+|+++.++|+|||++++.+......... ....-+++.+++++.||+.+..
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 319 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERI 319 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEE
Confidence 8872 23489999999999999999987532211110 0011344788889999987764
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=115.16 Aligned_cols=131 Identities=10% Similarity=0.035 Sum_probs=87.5
Q ss_pred CcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHH----HHHHHhCCCcEEEEecCCCCC---CCCCCee
Q 039518 223 NLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQI----QFALERGIGAMISALSTKQLP---YPSSSFE 294 (617)
Q Consensus 223 ~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~l----q~A~erg~~~~~~~~d~~~Lp---f~d~sFD 294 (617)
.+.+.+|.+|||+|||+|.++..+++. +... .+.++|+++.++ +.|+++ .++.+..+|+.... ...++||
T Consensus 71 ~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G-~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 71 TNPIRKGTKVLYLGAASGTTISHVSDIIELNG-KAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CCSCCTTCEEEEETCTTSHHHHHHHHHHTTTS-EEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred hcCCCCCCEEEEEeecCCHHHHHHHHHhCCCC-EEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccchhhhccccceE
Confidence 356788999999999999999999875 3222 678889999775 344444 46788888876532 1246899
Q ss_pred EEEecccccccccchH-HHHHHHHHhccCCeEEEEEeCCCC--C-CCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 295 MVHCSRCRVDWHANDG-ILLKEVDRVLRPNGYFVYSAPPAY--R-KDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~-~~L~el~RvLrPGG~Liis~p~~~--~-~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+|++.... . +.. .++..+.++|||||.|+++..... . ..+... .+.....++..||+++..
T Consensus 149 ~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~--~~~~~~~L~~~gf~~~~~ 213 (232)
T 3id6_C 149 VLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEI--YKTEVEKLENSNFETIQI 213 (232)
T ss_dssp EEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSS--TTHHHHHHHHTTEEEEEE
T ss_pred EEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHH--HHHHHHHHHHCCCEEEEE
Confidence 99987422 3 343 445566779999999999864321 1 111111 334556667779998874
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-11 Score=118.59 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=93.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCC---CCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYP---SSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~---d~sFDlV~~ 298 (617)
.++.+|||||||+|..+..|+..... ..++++|+++.+++.|+++ +. ++.+..+++++++.. +++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 46778999999999999999876432 2788899999999998875 54 478888888777643 478999997
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
..+ .+...++.++.++|||||++++.... ........+...++..||+...
T Consensus 158 ~a~-----~~~~~ll~~~~~~LkpgG~l~~~~g~------~~~~e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 158 RAV-----APLCVLSELLLPFLEVGGAAVAMKGP------RVEEELAPLPPALERLGGRLGE 208 (249)
T ss_dssp ESS-----CCHHHHHHHHGGGEEEEEEEEEEECS------CCHHHHTTHHHHHHHHTEEEEE
T ss_pred CCc-----CCHHHHHHHHHHHcCCCeEEEEEeCC------CcHHHHHHHHHHHHHcCCeEEE
Confidence 532 35778999999999999999886531 1111234467777888998775
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-11 Score=119.41 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=92.7
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.++.+|||+|||+|.++..+++.+. .+.++|+++.+++.|+++ +..+.+..++.... +++++||+|+++...
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYA 194 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcH
Confidence 3456799999999999999998876 678889999999988875 44467777665442 446789999986432
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
. ....++.++.++|+|||++++++... ...+.+.+++++.||+++...
T Consensus 195 ~----~~~~~l~~~~~~LkpgG~lils~~~~--------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 195 E----LHAALAPRYREALVPGGRALLTGILK--------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp H----HHHHHHHHHHHHEEEEEEEEEEEEEG--------GGHHHHHHHHHHTTCEEEEEE
T ss_pred H----HHHHHHHHHHHHcCCCCEEEEEeecc--------CCHHHHHHHHHHCCCEEEEEe
Confidence 2 35679999999999999999986421 114568888999999987754
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=122.87 Aligned_cols=131 Identities=15% Similarity=0.081 Sum_probs=97.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDW 305 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~ 305 (617)
..++.+|||||||+|.++..++++.... .++..|+ +.+++.|+++ .++.+..+|+.+ |++++ |+|+++.++|+|
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~ 274 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSI-NAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDW 274 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGB
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCC-EEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcC
Confidence 4566789999999999999999875433 5677898 7787777654 458888899876 77754 999999999988
Q ss_pred cc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCC---------------------hhhHHHHHHHHHHcCceEEEEe
Q 039518 306 HA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDY---------------------PLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 306 ~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~---------------------~~~W~~le~La~~~gw~~v~~~ 362 (617)
.+ +...+|++++++|+|||+++|.+.......... ...-+++.++++++||+.+...
T Consensus 275 ~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 353 (368)
T 3reo_A 275 SDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVA 353 (368)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEE
Confidence 73 245789999999999999999875322211110 0112347889999999988743
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-11 Score=116.35 Aligned_cols=103 Identities=12% Similarity=0.021 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCCCC--CCCCC-eeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQLP--YPSSS-FEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~Lp--f~d~s-FDlV~ 297 (617)
++.+|||+|||+|.++..++.++.. .++++|+++.+++.|+++ +. ++.+..+|+.++. +++++ ||+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCC--EEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 3457999999999999988777643 688899999999999875 43 5788888875543 23678 99999
Q ss_pred ecccccccccchHHHHHHH--HHhccCCeEEEEEeCCCC
Q 039518 298 CSRCRVDWHANDGILLKEV--DRVLRPNGYFVYSAPPAY 334 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el--~RvLrPGG~Liis~p~~~ 334 (617)
+...+ + ..+...++.++ .|+|+|||.++++..+..
T Consensus 131 ~~~~~-~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 131 LDPPF-H-FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp ECCCS-S-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred ECCCC-C-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 87653 3 34567788888 778999999999876443
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=122.46 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=99.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
..++.+|||||||+|.++..++++... ..++++|+ +.+++.|+++ +. .+.+..+|+.+.|+++. |+|+++
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~ 263 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFC 263 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCC-CeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEe
Confidence 345678999999999999999987543 26778899 8888888865 33 37888899888777654 999999
Q ss_pred cccccccc-chHHHHHHHHHhccCCeEEEEEeCCCCCC-CC------------CCh------hhHHHHHHHHHHcCceEE
Q 039518 300 RCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRK-DK------------DYP------LIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 300 ~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~-~~------------~~~------~~W~~le~La~~~gw~~v 359 (617)
.++++|.+ +...+|+++.++|+|||++++.+...... .+ ... ...+++.+++++.||+.+
T Consensus 264 ~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v 343 (359)
T 1x19_A 264 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDV 343 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEE
T ss_pred chhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceE
Confidence 99988873 36789999999999999998886322110 00 000 123447888899999987
Q ss_pred EEe
Q 039518 360 ARK 362 (617)
Q Consensus 360 ~~~ 362 (617)
...
T Consensus 344 ~~~ 346 (359)
T 1x19_A 344 TMV 346 (359)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=9.4e-11 Score=123.96 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..+++++.. .+.++|+++ +++.|+++ +.. +.+..++++++++++++||+|++..
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~--~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 141 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCS--EEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCC--EEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence 35567999999999999999998542 678889994 77777764 443 7899999999999989999999864
Q ss_pred ccc--ccccchHHHHHHHHHhccCCeEEEEE
Q 039518 301 CRV--DWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 301 ~l~--h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
+.. +...+...++.++.|+|||||+++..
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 322 22357888999999999999999743
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.7e-11 Score=125.62 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=94.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.++.+|||||||+|.++..++++.... .+.++|+ +.+++.|++. ..+.+..+|+.. ++++ ||+|+++.+++||.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLI-KGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWS 281 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGSC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCC-eEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccCC
Confidence 456789999999999999999876543 5667799 8888877653 347888888866 6664 99999999998887
Q ss_pred cchH--HHHHHHHHhccCCeEEEEEeCCCCCCCCC--------------------ChhhHHHHHHHHHHcCceEEEE
Q 039518 307 ANDG--ILLKEVDRVLRPNGYFVYSAPPAYRKDKD--------------------YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 307 ~d~~--~~L~el~RvLrPGG~Liis~p~~~~~~~~--------------------~~~~W~~le~La~~~gw~~v~~ 361 (617)
++. .+|+++.++|+|||++++.+......... .....+++.+++++.||+.+..
T Consensus 282 -d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 357 (372)
T 1fp1_D 282 -DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV 357 (372)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEE
Confidence 555 89999999999999999985321111000 0011234778888889887764
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=120.06 Aligned_cols=131 Identities=16% Similarity=0.026 Sum_probs=93.3
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH--h--CCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE--R--GIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e--r--g~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
...++.+|||||||+|.++..++++.... .++.+|+++.. ..++. . ...+.+..+|+. .+++ +||+|+++.
T Consensus 181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~~~-~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~ 255 (348)
T 3lst_A 181 DFPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAEVV-ARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKR 255 (348)
T ss_dssp CCCSSEEEEEETCTTSHHHHHHHHHCTTE-EEEEEECHHHH-TTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEES
T ss_pred CccCCceEEEECCccCHHHHHHHHHCCCC-EEEEecCHHHh-hcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEeh
Confidence 34567789999999999999999875543 56778885433 31110 1 224788888875 3445 899999999
Q ss_pred cccccccch--HHHHHHHHHhccCCeEEEEEeCCCCCCCCCC----------------hhhHHHHHHHHHHcCceEEEE
Q 039518 301 CRVDWHAND--GILLKEVDRVLRPNGYFVYSAPPAYRKDKDY----------------PLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 301 ~l~h~~~d~--~~~L~el~RvLrPGG~Liis~p~~~~~~~~~----------------~~~W~~le~La~~~gw~~v~~ 361 (617)
++++|. +. ..+|+++.++|||||++++.+.......... ....+++.+++++.||+.+..
T Consensus 256 vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 333 (348)
T 3lst_A 256 ILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRV 333 (348)
T ss_dssp CGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 998887 44 6899999999999999999875322211110 112345888999999998764
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=115.94 Aligned_cols=104 Identities=10% Similarity=0.037 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCC---------cEEEEecCCCC-------CCCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIG---------AMISALSTKQL-------PYPS 290 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~---------~~~~~~d~~~L-------pf~d 290 (617)
.++.+|||+|||+|.++..++++... ..++++|+++.+++.|+++... +.+..+|+.++ ++++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999987543 4789999999999999986432 67888888776 3567
Q ss_pred CCeeEEEeccccccc-----------------ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 291 SSFEMVHCSRCRVDW-----------------HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~-----------------~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++||+|+++...... ......++.++.++|+|||.|++..+
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 899999997322211 12367889999999999999999875
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-10 Score=119.31 Aligned_cols=127 Identities=10% Similarity=0.183 Sum_probs=88.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEE-EecCCCCC---CCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMIS-ALSTKQLP---YPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~-~~d~~~Lp---f~d~sFDlV~~s~~l~ 303 (617)
++.+|||||||||.++..|++++.. .++++|+++.|++.+.++...+... ..++..++ ++..+||+|++..+++
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~--~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAK--LVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI 162 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred cccEEEecCCCccHHHHHHHhCCCC--EEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence 4567999999999999999988643 6788899999998876654443322 22333333 3445699999876554
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC-------------ChhhHHHHHHHHHHcCceEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD-------------YPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~-------------~~~~W~~le~La~~~gw~~v~ 360 (617)
+...+|.++.|+|+|||.+++..-|....... +...-+++..+++..||.+..
T Consensus 163 ----sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~ 228 (291)
T 3hp7_A 163 ----SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKG 228 (291)
T ss_dssp ----CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred ----hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34679999999999999999974332211110 011233477888899999776
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=120.11 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=96.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
..++.+|||||||+|.++..++++.... .++++|+ +.+++.|+++ +. ++.+..+|+.+ +++. .||+|+++
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~ 256 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILS 256 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEE
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCC-EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEc
Confidence 3456789999999999999998875432 5667788 7888888764 33 47888888754 4444 49999999
Q ss_pred ccccccccc-hHHHHHHHHHhccCCeEEEEEeCC-CCCCCCCC----------------hhhHHHHHHHHHHcCceEEEE
Q 039518 300 RCRVDWHAN-DGILLKEVDRVLRPNGYFVYSAPP-AYRKDKDY----------------PLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p~-~~~~~~~~----------------~~~W~~le~La~~~gw~~v~~ 361 (617)
.++++|.+. ...+++++.++|+|||++++.++. ........ ...-+++.+++++.||+.+..
T Consensus 257 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (360)
T 1tw3_A 257 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEV 336 (360)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEE
Confidence 998888732 257999999999999999998764 21111000 011344788899999988764
Q ss_pred e
Q 039518 362 K 362 (617)
Q Consensus 362 ~ 362 (617)
.
T Consensus 337 ~ 337 (360)
T 1tw3_A 337 R 337 (360)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-11 Score=118.53 Aligned_cols=100 Identities=11% Similarity=0.179 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+..+|||+|||+|.++..++.....+ .+.++|+++.|++.++++ |....+.+.|.... .+.++||+|+...++|
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHH
Confidence 35579999999999999998886666 899999999999999876 55545555665433 4568899999998777
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+. ++....+.++.+.|+|||.++-..
T Consensus 127 lL-~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 127 VL-KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HH-HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hh-hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 77 677778889999999999877543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=117.51 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++.+|||+|||+|.++..+++.... ..++++|+++.+++.|+++ +. ++.+..+|... ++++++||+|+++...
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 186 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCC
Confidence 4557999999999999999865322 2688899999999998876 44 47777777755 2446789999997332
Q ss_pred cc-------------cc-----------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceE
Q 039518 303 VD-------------WH-----------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKL 358 (617)
Q Consensus 303 ~h-------------~~-----------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~ 358 (617)
+. .+ .+...++.++.++|+|||++++..+.. . -+.+.+++++.||+.
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~------~---~~~~~~~l~~~Gf~~ 257 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ------Q---GEAVRQAFILAGYHD 257 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS------C---HHHHHHHHHHTTCTT
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch------H---HHHHHHHHHHCCCcE
Confidence 21 11 234678999999999999999975421 1 355888888999976
Q ss_pred EE
Q 039518 359 IA 360 (617)
Q Consensus 359 v~ 360 (617)
+.
T Consensus 258 v~ 259 (276)
T 2b3t_A 258 VE 259 (276)
T ss_dssp CC
T ss_pred EE
Confidence 54
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=111.50 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=86.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.+|||+|||+|.++..++..... ..++++|+++.+++.|+++ +. ++.+..+|+..++ ++++||+|++.. +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-~- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S-
T ss_pred CCeEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec-c-
Confidence 567999999999999999876322 2678899999999988875 44 3778888887766 467899999753 2
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.+...++.++.++|+|||++++..... . -+++..+.+ ||+.+.
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~------~---~~~~~~~~~--g~~~~~ 184 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKGQM------P---EDEIALLPE--EYQVES 184 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEESSC------C---HHHHHTSCT--TEEEEE
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeCCC------c---hHHHHHHhc--CCceee
Confidence 367889999999999999999975321 1 233444444 888765
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.1e-11 Score=115.18 Aligned_cols=96 Identities=10% Similarity=0.055 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI---GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~---~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.++.+|||||||+|.++..+++.+. .++++|+++.+++.|+++.. ++.+..+|.......+++||+|++..+++
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAP 145 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHH
Confidence 4566899999999999999998763 77888999999999998732 57788888766333467899999998777
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++. .++.++|+|||.++++.++
T Consensus 146 ~~~-------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 146 TLL-------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp SCC-------HHHHHTEEEEEEEEEEECS
T ss_pred HHH-------HHHHHHcCCCcEEEEEEcC
Confidence 654 3689999999999998763
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=122.54 Aligned_cols=128 Identities=11% Similarity=0.069 Sum_probs=95.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.++.+|||||||+|.++..++++.... .++++|+ +.+++.|++. ..+.+..+|+.. ++++ ||+|+++.++++|.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDR-PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWT 260 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGGSC
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCC-eEEEeeC-HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhccCC
Confidence 456789999999999999999874432 6788899 8888887654 247888888755 5553 99999999999887
Q ss_pred cchH--HHHHHHHHhccC---CeEEEEEeCCCCCCCCC-------------------ChhhHHHHHHHHHHcCceEEEE
Q 039518 307 ANDG--ILLKEVDRVLRP---NGYFVYSAPPAYRKDKD-------------------YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 307 ~d~~--~~L~el~RvLrP---GG~Liis~p~~~~~~~~-------------------~~~~W~~le~La~~~gw~~v~~ 361 (617)
+.. .+|+++.++||| ||++++.++........ ....-+++.+++++.||+.+..
T Consensus 261 -d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 338 (352)
T 1fp2_A 261 -DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI 338 (352)
T ss_dssp -HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred -HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEE
Confidence 555 899999999999 99999987532211100 0011345788888999987764
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.6e-12 Score=131.78 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=80.3
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
+.+|||+|||+|.++..+++++... .++++|+++.+++.|+++ +....+...|.... .+++||+|+++..+++
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE--VKGRFDMIISNPPFHD 273 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT--CCSCEEEEEECCCCCS
T ss_pred CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc--ccCCeeEEEECCCccc
Confidence 3469999999999999999876433 678899999999988875 55667777776544 4678999999876654
Q ss_pred c----ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 305 W----HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 305 ~----~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. ..+...++.++.++|||||.+++..+
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 1 23567899999999999999999875
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=121.65 Aligned_cols=130 Identities=17% Similarity=0.084 Sum_probs=97.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
.+..+|||||||+|.++..++++.... .++..|+ +.+++.|+++ .++.+..+|+.. |++++ |+|++..++|+|.
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~ 273 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTI-KGVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWS 273 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSC
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCC-eEEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCC
Confidence 456789999999999999999875433 5677898 7777776653 468899999877 77765 9999999999987
Q ss_pred -cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCC---------------------hhhHHHHHHHHHHcCceEEEEe
Q 039518 307 -ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDY---------------------PLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 307 -~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~---------------------~~~W~~le~La~~~gw~~v~~~ 362 (617)
++...+|++++++|||||+++|.+.......... ...-+++.++++++||+.+...
T Consensus 274 d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 351 (364)
T 3p9c_A 274 DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKST 351 (364)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 3356799999999999999999875322111100 0112347889999999988743
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=114.18 Aligned_cols=120 Identities=14% Similarity=0.174 Sum_probs=93.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
..++.+|||+|||+|.++..+++. +.. ..+.++|+++.+++.|+++ +.+ +.+..+|+.+. +++++||+|++
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~ 168 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVIL 168 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEE
Confidence 356778999999999999999987 422 2678889999999999876 443 77888887644 67788999997
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC--ceEEEE
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC--WKLIAR 361 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~g--w~~v~~ 361 (617)
. . .++..++.++.++|+|||.+++..+.. ....++.+.+++.| |..+..
T Consensus 169 ~-----~-~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 169 D-----L-PQPERVVEHAAKALKPGGFFVAYTPCS--------NQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp C-----S-SCGGGGHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHTGGGBSCCEE
T ss_pred C-----C-CCHHHHHHHHHHHcCCCCEEEEEECCH--------HHHHHHHHHHHHcCCCccccEE
Confidence 4 2 366789999999999999999987632 12445777778888 876653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=7e-11 Score=109.71 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=85.7
Q ss_pred CChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEE
Q 039518 204 HGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMIS 279 (617)
Q Consensus 204 ~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~ 279 (617)
.......+.+.+.+... ..++.+|||+|||+|.++..+++++.. ++++|+++.+++.|+++ +.++.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~-----~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 93 (171)
T 1ws6_A 22 PSPVRLRKALFDYLRLR-----YPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVV 93 (171)
T ss_dssp CCCHHHHHHHHHHHHHH-----CTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCHHHHHHHHHHHHHhh-----ccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEE
Confidence 34445555555555321 113456999999999999999998764 78899999999998875 4467788
Q ss_pred EecCCC-CCC---CCCCeeEEEecccccccccchHHHHHHHH--HhccCCeEEEEEeCCC
Q 039518 280 ALSTKQ-LPY---PSSSFEMVHCSRCRVDWHANDGILLKEVD--RVLRPNGYFVYSAPPA 333 (617)
Q Consensus 280 ~~d~~~-Lpf---~d~sFDlV~~s~~l~h~~~d~~~~L~el~--RvLrPGG~Liis~p~~ 333 (617)
.+|+.+ ++. ..++||+|+++..++ .+....+..+. ++|+|||.++++.+..
T Consensus 94 ~~d~~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 94 ALPVEVFLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CSCHHHHHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred eccHHHHHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 877655 221 134799999886543 34556677777 9999999999988643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=109.04 Aligned_cols=120 Identities=9% Similarity=0.006 Sum_probs=87.0
Q ss_pred CChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcE
Q 039518 204 HGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAM 277 (617)
Q Consensus 204 ~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~ 277 (617)
.....+.+.+.+.+.. ..++.+|||+|||+|.++..+++++. ..++++|+++.+++.|+++ +. ++.
T Consensus 26 p~~~~~~~~~~~~l~~------~~~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 97 (187)
T 2fhp_A 26 PTTDKVKESIFNMIGP------YFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFE 97 (187)
T ss_dssp CCCHHHHHHHHHHHCS------CCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEE
T ss_pred cCHHHHHHHHHHHHHh------hcCCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceE
Confidence 3445566666655521 13456799999999999998888653 2688899999999988875 43 477
Q ss_pred EEEecCCCC----CCCCCCeeEEEecccccccccchHHHHHHH--HHhccCCeEEEEEeCCC
Q 039518 278 ISALSTKQL----PYPSSSFEMVHCSRCRVDWHANDGILLKEV--DRVLRPNGYFVYSAPPA 333 (617)
Q Consensus 278 ~~~~d~~~L----pf~d~sFDlV~~s~~l~h~~~d~~~~L~el--~RvLrPGG~Liis~p~~ 333 (617)
+..+|+.+. ++.+++||+|+++...+ ..+....+..+ .++|+|||.+++..+..
T Consensus 98 ~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~--~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 98 VRKMDANRALEQFYEEKLQFDLVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EEECcHHHHHHHHHhcCCCCCEEEECCCCC--chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 888876542 22367899999876532 23566777777 99999999999987643
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-11 Score=119.00 Aligned_cols=123 Identities=11% Similarity=-0.037 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC----CcEEEEecCCCCCCCC-----CCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI----GAMISALSTKQLPYPS-----SSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~----~~~~~~~d~~~Lpf~d-----~sFDlV~ 297 (617)
.++.+|||+|||+|.++..+++.... ..++++|+++.+++.|+++.. ++.+..+|+.+ ++++ ++||+|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~ 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIV 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEE
Confidence 35667999999999999999988543 378899999999999887632 45556666655 5554 8999999
Q ss_pred ecccccccc------cc-------------------hHHHHHHHHHhccCCeE-EEEEeCCCCCCCCCChhhHHHHHHHH
Q 039518 298 CSRCRVDWH------AN-------------------DGILLKEVDRVLRPNGY-FVYSAPPAYRKDKDYPLIWDKLVNLT 351 (617)
Q Consensus 298 ~s~~l~h~~------~d-------------------~~~~L~el~RvLrPGG~-Liis~p~~~~~~~~~~~~W~~le~La 351 (617)
++...++.. .+ ...++.++.++|||||+ +++..+. .. .+.+.+++
T Consensus 107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~--~~~~~~~l 177 (215)
T 4dzr_A 107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH-------NQ--ADEVARLF 177 (215)
T ss_dssp ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-------SC--HHHHHHHT
T ss_pred ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-------cc--HHHHHHHH
Confidence 964332211 00 16788999999999999 5554431 11 45577888
Q ss_pred H--HcCceEEE
Q 039518 352 T--AMCWKLIA 360 (617)
Q Consensus 352 ~--~~gw~~v~ 360 (617)
+ ..||..+.
T Consensus 178 ~~~~~gf~~~~ 188 (215)
T 4dzr_A 178 APWRERGFRVR 188 (215)
T ss_dssp GGGGGGTEECC
T ss_pred HHhhcCCceEE
Confidence 8 88887655
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=121.10 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..+++.+. ..+.++|+++ +++.|+++ + .++.+..+|+.++++++++||+|++..
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 139 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence 4566799999999999999998864 2678889996 88887765 3 357888999999998888999999875
Q ss_pred cc--cccccchHHHHHHHHHhccCCeEEEE
Q 039518 301 CR--VDWHANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 301 ~l--~h~~~d~~~~L~el~RvLrPGG~Lii 328 (617)
.. .+...+...++.++.|+|||||.++.
T Consensus 140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred chhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 21 22234577899999999999999973
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=122.22 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=80.6
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
..++.+|||||||+|.++..+++++.. .++++|++ .+++.|+++ +.. +.+..+|+++++++ ++||+|++.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~--~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~ 136 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGAR--KVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISE 136 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCS--EEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEEC
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCC--EEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEc
Confidence 346678999999999999999998753 67788999 888887765 433 78899999998877 889999986
Q ss_pred ccccccc--cchHHHHHHHHHhccCCeEEEEEe
Q 039518 300 RCRVDWH--ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 300 ~~l~h~~--~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...+... .....++.++.++|||||.++++.
T Consensus 137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 137 WMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred ChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 4222222 457789999999999999998754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-11 Score=127.32 Aligned_cols=134 Identities=16% Similarity=0.093 Sum_probs=92.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC----CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI----GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~----~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
++.+|||+|||+|.++..+++++.. ..++++|+++.+++.|+++ ++ ++.+...|+.. ++++++||+|+|+
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN 299 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence 3467999999999999999988532 2788899999999988875 32 36668888765 5677899999998
Q ss_pred ccccccc---c-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEeecc
Q 039518 300 RCRVDWH---A-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKEE 372 (617)
Q Consensus 300 ~~l~h~~---~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp~ 372 (617)
..+++.. . ....++.++.++|+|||.++++.+... . .-..++++.. ..+.+.......|++...
T Consensus 300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~------~-~~~~l~~~fg--~~~~~a~~~~F~V~~~~~ 367 (375)
T 4dcm_A 300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL------D-YFHKLKKIFG--NCTTIATNNKFVVLKAVK 367 (375)
T ss_dssp CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS------C-HHHHHHHHHS--CCEEEEECSSEEEEEEEC
T ss_pred CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc------C-HHHHHHHhcC--CEEEEeeCCCEEEEEEcC
Confidence 7665421 1 124689999999999999999874221 1 0112333322 356666666666655443
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=117.52 Aligned_cols=103 Identities=10% Similarity=0.027 Sum_probs=81.0
Q ss_pred CCeEEEECCCC---cHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCC-----------CCCC
Q 039518 229 VFQVLDVGCGV---ASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLP-----------YPSS 291 (617)
Q Consensus 229 g~rVLDIGCGt---G~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lp-----------f~d~ 291 (617)
..+|||||||+ |.++..+.+.... ..++++|+++.+++.|+++. ..+.+..+|+.+.+ ++..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~-~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPD-ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCC-CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 35799999999 9887766654332 27888999999999998863 35788888876421 2335
Q ss_pred CeeEEEeccccccccc-chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 292 SFEMVHCSRCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 292 sFDlV~~s~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
+||+|+++.+++++.+ ++..+|+++.++|+|||+|+++...
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 8999999988877763 3789999999999999999999754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=111.98 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=85.7
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEe
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISAL 281 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~ 281 (617)
....+.+.+.+... .++.+|||+|||+|.++..+++++.. .++++|+++.+++.|+++ +. ++.+..+
T Consensus 39 ~~~~~~l~~~l~~~------~~~~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~ 110 (202)
T 2fpo_A 39 DRVRETLFNWLAPV------IVDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNS 110 (202)
T ss_dssp HHHHHHHHHHHHHH------HTTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred HHHHHHHHHHHHhh------cCCCeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 34445555555321 13457999999999999988877653 688899999999999875 33 5788888
Q ss_pred cCCC-CCCCCCCeeEEEecccccccccchHHHHHHHHH--hccCCeEEEEEeCC
Q 039518 282 STKQ-LPYPSSSFEMVHCSRCRVDWHANDGILLKEVDR--VLRPNGYFVYSAPP 332 (617)
Q Consensus 282 d~~~-Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~R--vLrPGG~Liis~p~ 332 (617)
|+.+ ++..+++||+|++... .+. .+...++.++.+ +|+|||.++++..+
T Consensus 111 D~~~~~~~~~~~fD~V~~~~p-~~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 111 NAMSFLAQKGTPHNIVFVDPP-FRR-GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CHHHHHSSCCCCEEEEEECCS-SST-TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CHHHHHhhcCCCCCEEEECCC-CCC-CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 8755 5666778999998754 232 356778888865 59999999998753
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=114.91 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=81.5
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh-----C---CCcEEEEecCCCCCCCCCCeeEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER-----G---IGAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er-----g---~~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
+.++.+|||+|||+|.++..+++. +.. ..+.++|+++.+++.|+++ + .++.+..+|+..+++++++||+|
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v 175 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA 175 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEE
Confidence 356778999999999999999885 221 2678889999999998876 3 35788888988888888899999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++. . .++..++.++.++|+|||++++..+
T Consensus 176 ~~~-----~-~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 176 VLD-----M-LAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp EEE-----S-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred EEC-----C-cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 973 2 2566899999999999999999986
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=117.82 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=92.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCCCC--CCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQLPY--PSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~Lpf--~d~sFDlV 296 (617)
++.+|||||||+|.++..+++... ...++++|+++.+++.|+++. .++.+..+|...++. ++++||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 456899999999999999987632 237888999999999998764 347788888765543 47889999
Q ss_pred Eecccccccccch----HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 297 HCSRCRVDWHAND----GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 297 ~~s~~l~h~~~d~----~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
++........ .. ..+++++.++|+|||.+++....... .......+.+.+++.||..+.
T Consensus 174 i~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~----~~~~~~~~~~~l~~~GF~~v~ 236 (304)
T 3bwc_A 174 IIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGESIWL----DLELIEKMSRFIRETGFASVQ 236 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTT----CHHHHHHHHHHHHHHTCSEEE
T ss_pred EECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCCccc----chHHHHHHHHHHHhCCCCcEE
Confidence 9864332222 11 57899999999999999998653211 122245577888888998665
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=119.30 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=91.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEecc-
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSR- 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~- 300 (617)
.++.+|||+|||+|..+..|++.......+.++|+++.+++.++++ +. ++.+..+|+..++..+++||+|++..
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 4667899999999999999987532223678899999999988776 55 57788888877765567899999731
Q ss_pred -----cccc-------ccc--------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 301 -----CRVD-------WHA--------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 301 -----~l~h-------~~~--------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.+.+ |.. ....+|.++.++|||||++++++-..... +. -..+..++++.+|+.+.
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~--En---e~~v~~~l~~~~~~~~~ 271 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE--EN---EFVIQWALDNFDVELLP 271 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHSSEEEEC
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH--Hh---HHHHHHHHhcCCCEEec
Confidence 1111 110 01478999999999999999987543322 11 22367777888877654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=125.28 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=81.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh-----------C---CCcEEEEecCCCCCCCC
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER-----------G---IGAMISALSTKQLPYPS 290 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er-----------g---~~~~~~~~d~~~Lpf~d 290 (617)
+.++.+|||||||+|.++..++.. +.. .+.++|+++.+++.|+++ | .++.+..+|+..+|+.+
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~--kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d 248 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE 248 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc
Confidence 456778999999999999988864 332 578899999988888652 3 35889999999888754
Q ss_pred --CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 291 --SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 291 --~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..||+|+++..+ + .++....|.+++|+|||||.|+++.+
T Consensus 249 ~~~~aDVVf~Nn~~-F-~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 249 RIANTSVIFVNNFA-F-GPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp HHHTCSEEEECCTT-C-CHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred ccCCccEEEEcccc-c-CchHHHHHHHHHHcCCCCcEEEEeec
Confidence 479999987643 3 35788899999999999999998754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-10 Score=106.99 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=75.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlV~ 297 (617)
.++.+|||+|||+|.++..+++. +.. ..++++|+++ +++. .++.+..+|+..++ +++++||+|+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~ 93 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALLERVGDSKVQVVM 93 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc-----CcEEEEEcccccchhhhhhhccCCCCceeEEE
Confidence 45668999999999999999887 332 2677788887 5432 35778888888776 6778999999
Q ss_pred ecccccccccch-----------HHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHAND-----------GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~d~-----------~~~L~el~RvLrPGG~Liis~p 331 (617)
++..+++.. +. ..++.++.++|+|||.++++.+
T Consensus 94 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 94 SDMAPNMSG-TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp ECCCCCCCS-CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCccccC-CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 976544332 33 6889999999999999999875
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=109.55 Aligned_cols=101 Identities=8% Similarity=0.052 Sum_probs=77.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lpf~d~sFDlV~~s~ 300 (617)
++.+|||+|||+|.++..+++++. ..++++|+++.+++.|+++ +. ++.+..+|+.+ ++..+++||+|+++.
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 456799999999999999998753 3688899999999999875 33 36777777655 344456799999875
Q ss_pred cccccccchHHHHHHHH--HhccCCeEEEEEeCC
Q 039518 301 CRVDWHANDGILLKEVD--RVLRPNGYFVYSAPP 332 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~--RvLrPGG~Liis~p~ 332 (617)
..+ . ......+..+. ++|+|||.+++..+.
T Consensus 109 ~~~-~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYA-K-ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SSH-H-HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCC-c-chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 432 1 24566777776 999999999998764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-11 Score=119.72 Aligned_cols=127 Identities=13% Similarity=0.211 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEE-ecC-----CCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISA-LST-----KQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~-~d~-----~~Lpf~d~sFDlV~~s~~ 301 (617)
.+.+|||||||+|.++..|++++.. .++++|+++.|++.|+++...+.... .++ ..++ ...||.+.+..+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~D~v 112 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFE--QGRPSFTSIDVS 112 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCC--SCCCSEEEECCS
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcC--cCCCCEEEEEEE
Confidence 3567999999999999999998643 68889999999999887654432211 111 1222 112344433322
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCC----------C---ChhhHHHHHHHHHHcCceEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDK----------D---YPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~----------~---~~~~W~~le~La~~~gw~~v~~~ 362 (617)
+.+ ...+|.++.|+|||||++++...+...... + +....+++.+++++.||+++...
T Consensus 113 ~~~----l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 113 FIS----LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp SSC----GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred hhh----HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 222 257999999999999999997421111000 0 11123448888999999987643
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.07 E-value=6.7e-10 Score=110.98 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------------CC-CcEEEEecCCC-CC--CCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------------GI-GAMISALSTKQ-LP--YPS 290 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------------g~-~~~~~~~d~~~-Lp--f~d 290 (617)
.++.+|||||||+|.++..+++.+.. ..++++|+++.+++.|+++ +. ++.+..+|+.. ++ +++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34567999999999999999987643 2688899999999888653 43 57888888865 66 778
Q ss_pred CCeeEEEecccccccccc--------hHHHHHHHHHhccCCeEEEEEeC
Q 039518 291 SSFEMVHCSRCRVDWHAN--------DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~~~d--------~~~~L~el~RvLrPGG~Liis~p 331 (617)
++||.|+.... ..|... ...++.++.++|+|||.|++.+.
T Consensus 127 ~~~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 127 GQLSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp TCEEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 89999985421 111100 04799999999999999999763
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=7.9e-10 Score=112.27 Aligned_cols=120 Identities=12% Similarity=0.122 Sum_probs=92.6
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
+.++.+|||+|||+|.++..+++. +.. ..+.++|+++.+++.|+++ +. ++.+...|+.+. +++++||+|++
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~ 187 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFL 187 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEE
Confidence 456778999999999999999887 432 2778889999999999876 43 567777787665 66778999997
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. . .++..++.++.++|+|||.+++..+.. ....++.+.+++.||..+..
T Consensus 188 ~-----~-~~~~~~l~~~~~~L~pgG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~~~ 236 (277)
T 1o54_A 188 D-----V-PDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRIEV 236 (277)
T ss_dssp C-----C-SCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEEEE
T ss_pred C-----C-cCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceeEE
Confidence 4 2 366789999999999999999988631 11445666677789986653
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.07 E-value=9e-10 Score=112.74 Aligned_cols=128 Identities=11% Similarity=-0.003 Sum_probs=88.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCC-cHHHHHHHHHhC---------------CCcEEEEecCCCCC--C-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDG-HENQIQFALERG---------------IGAMISALSTKQLP--Y- 288 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDi-s~~~lq~A~erg---------------~~~~~~~~d~~~Lp--f- 288 (617)
++.+|||+|||+|.++..+++.+.. .++++|+ ++.+++.|+++. .++.+...+..+.. +
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~~--~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGAD--QVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCS--EEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCCC--EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 5567999999999999999887642 6788899 899999887653 13444443322211 1
Q ss_pred ---CCCCeeEEEecccccccccchHHHHHHHHHhcc---C--CeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC-ceEE
Q 039518 289 ---PSSSFEMVHCSRCRVDWHANDGILLKEVDRVLR---P--NGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC-WKLI 359 (617)
Q Consensus 289 ---~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLr---P--GG~Liis~p~~~~~~~~~~~~W~~le~La~~~g-w~~v 359 (617)
++++||+|+++.++++. .+...++.++.++|+ | ||.+++...+........ -..+.+.+++.| |++.
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~-~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~---~~~~~~~l~~~G~f~v~ 232 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH-QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAER---DLAFFRLVNADGALIAE 232 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG-GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------CTHHHHHHHHSTTEEEE
T ss_pred hhccCCCCCEEEEeCcccCh-HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchh---HHHHHHHHHhcCCEEEE
Confidence 35789999998877664 478899999999999 9 999877654322111110 123556778889 9877
Q ss_pred EE
Q 039518 360 AR 361 (617)
Q Consensus 360 ~~ 361 (617)
..
T Consensus 233 ~~ 234 (281)
T 3bzb_A 233 PW 234 (281)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-10 Score=119.41 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||||||+|.++..+++.+.....++++|+++.+++.|+++ +. ++.+..+|..+.+.++++||+|++..+
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 153 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCC
Confidence 4667899999999999999988754322578889999999999876 43 478888888776555678999999987
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++.. .++.++|||||.++++..
T Consensus 154 ~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 154 VDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp BSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred HHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 76654 578899999999999864
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.5e-10 Score=115.98 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=77.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||||||+|.++..+++.+.. .+.++|++ .+++.|+++ +. .+.+..+++.++++++++||+|++...
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~--~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCS--EEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred CCCEEEEecCccHHHHHHHHHCCCC--EEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 3457999999999999999988642 67788998 577777664 43 478888999999888889999998743
Q ss_pred cccc--ccchHHHHHHHHHhccCCeEEEE
Q 039518 302 RVDW--HANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 302 l~h~--~~d~~~~L~el~RvLrPGG~Lii 328 (617)
.... ...+..++.++.++|+|||.++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 2222 24577899999999999999974
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=107.51 Aligned_cols=132 Identities=9% Similarity=0.060 Sum_probs=87.8
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh---CCCcEEEEecCCCCC---CCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER---GIGAMISALSTKQLP---YPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er---g~~~~~~~~d~~~Lp---f~d~sFDlV 296 (617)
+.+.++.+|||+|||+|.++..|+++ +... .+.++|+++.+++.+.++ ..++.+..+|+.... ...++||+|
T Consensus 69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v 147 (227)
T 1g8a_A 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEG-KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHHhCCCe-EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEE
Confidence 34567788999999999999999876 3222 678889999988877664 235788888876631 124589999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhH-HHHHHHHHHcCceEEEE
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIW-DKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W-~~le~La~~~gw~~v~~ 361 (617)
++... .......++.++.++|||||+++++........ +...... +++..+ ... |+.+..
T Consensus 148 ~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~ 209 (227)
T 1g8a_A 148 FEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIER 209 (227)
T ss_dssp EECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEE
T ss_pred EECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeE
Confidence 97642 222234559999999999999999743221111 1111111 235666 555 887753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-11 Score=121.95 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ ++ ++.+..+|+..++ ++++||+|+++..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP 153 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC
T ss_pred CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC
Confidence 456799999999999999999873 678899999999998875 43 5888888887776 5679999999876
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
+++.. +....+.++.++|+|||.+++.
T Consensus 154 ~~~~~-~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 154 WGGPD-YATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CSSGG-GGGSSSBCTTTSCSSCHHHHHH
T ss_pred cCCcc-hhhhHHHHHHhhcCCcceeHHH
Confidence 65543 5555788999999999997764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-10 Score=110.22 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=76.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||||||+|.++..+++.......++++|+++.+++.|+++ +. ++.+...|.......+++||+|++..+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 155 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAA 155 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCc
Confidence 4566899999999999999988741112678889999999999876 33 467777776432223678999999987
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++++. .++.++|||||.+++..++
T Consensus 156 ~~~~~-------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 156 GPKIP-------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BSSCC-------HHHHHTEEEEEEEEEEESS
T ss_pred hHHHH-------HHHHHHcCCCcEEEEEECC
Confidence 77654 4889999999999998863
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6.9e-10 Score=117.17 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=79.7
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..+++.+.. .++++|+++ +++.|+++ +. ++.+..+|+++++++ ++||+|++..
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~--~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~ 124 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGAR--KIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEP 124 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECC
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCC--EEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeC
Confidence 35668999999999999999987642 677788885 66777654 43 478888999888765 5799999987
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+|+. ++....+.++.++|+|||.+++..
T Consensus 125 ~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 125 MGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred chhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 777765 445678889999999999999754
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-10 Score=109.19 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=77.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----C------CCcEEEEecCCCCCCCCCCeeE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----G------IGAMISALSTKQLPYPSSSFEM 295 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g------~~~~~~~~d~~~Lpf~d~sFDl 295 (617)
.++.+|||+|||+|.++..+++. +.. ..++++|+++.+++.|+++ + .++.+..+|....+..+++||+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 46678999999999999999876 322 2678889999999988765 2 2577888887766555778999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
|++.....++ +.++.++|||||.++++.++
T Consensus 155 i~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVV-------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSC-------CHHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHH-------HHHHHHhcCCCcEEEEEEec
Confidence 9988765443 36889999999999998763
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.8e-10 Score=117.11 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=93.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||||||+|.++..++++.... .++.+|+ +.+++.|++. ..+.+..+|+.. +++ +||+|+++.++++|.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~- 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHL-KCTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN- 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTS-EEEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGSC-
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCC-eEEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCCC-
Confidence 44679999999999999999875432 5667798 6777766642 347888888866 665 499999999988887
Q ss_pred chH--HHHHHHHHhccC---CeEEEEEeCCCCCCCCC-----C---------------hhhHHHHHHHHHHcCceEEEE
Q 039518 308 NDG--ILLKEVDRVLRP---NGYFVYSAPPAYRKDKD-----Y---------------PLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 308 d~~--~~L~el~RvLrP---GG~Liis~p~~~~~~~~-----~---------------~~~W~~le~La~~~gw~~v~~ 361 (617)
++. .+|+++.++|+| ||++++.+......... . ....+++.+++++.||+.+..
T Consensus 266 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 344 (358)
T 1zg3_A 266 DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKI 344 (358)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEE
Confidence 555 899999999999 99999987532111110 0 011234778888999987764
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=107.08 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=78.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|.++..+++.+ ..+.++|+++.+++.|+++ +. ++.+...|+.+..+++++||+|++.
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~- 165 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD- 165 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC-
T ss_pred CCCCEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC-
Confidence 466789999999999999998873 3678889999999999876 33 4677777776654366789999973
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..++..++.++.++|+|||.+++..+
T Consensus 166 -----~~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 166 -----VREPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp -----SSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred -----CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22667899999999999999999886
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-10 Score=110.04 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=77.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCC----cEEEeeecCCcHHHHHHHHHh----C------CCcEEEEecCCCCC----C
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDI----QTMSFAPKDGHENQIQFALER----G------IGAMISALSTKQLP----Y 288 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv----~~v~v~~iDis~~~lq~A~er----g------~~~~~~~~d~~~Lp----f 288 (617)
.++.+|||||||+|.++..+++... ....++++|+++.+++.|+++ + .++.+..+|..... .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 4567899999999999999987642 122678889999999998876 3 35788888877654 5
Q ss_pred CCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 289 PSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 289 ~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..++||+|++.....++ +.++.++|+|||.+++..+
T Consensus 159 ~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEc
Confidence 56789999988765543 4788999999999999875
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-10 Score=110.19 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CCCC-----CCCeeE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LPYP-----SSSFEM 295 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lpf~-----d~sFDl 295 (617)
++.+|||||||+|..+..+++.......++++|+++.+++.|+++ +. .+.+..+|+.. ++.. .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 345699999999999999988522123788889999999999875 44 37888887633 3322 268999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|++.....++. +...++.++ ++|||||++++...
T Consensus 138 V~~d~~~~~~~-~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 138 VFLDHWKDRYL-PDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EEECSCGGGHH-HHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEcCCcccch-HHHHHHHhc-cccCCCeEEEEeCC
Confidence 99875444443 445677777 99999999998653
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.6e-09 Score=110.44 Aligned_cols=132 Identities=12% Similarity=0.044 Sum_probs=97.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-----CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG-----IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg-----~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
..+..+|||||||+|.++..++++.+.. .++..|. +.+++.|+++. .++.+..+|+...|.+ .+|+|++.+
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~-~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~ 252 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGC-KITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILAR 252 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSC-EEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEES
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCc-eeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeee
Confidence 3455679999999999999999986643 4455676 67788887752 3478888888665554 479999999
Q ss_pred cccccccc-hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCC-----------------hhhHHHHHHHHHHcCceEEEE
Q 039518 301 CRVDWHAN-DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDY-----------------PLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 301 ~l~h~~~d-~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~-----------------~~~W~~le~La~~~gw~~v~~ 361 (617)
++|+|.++ -..+|+++++.|+|||.++|.+.......... .+.-+++.++++++||+.+..
T Consensus 253 vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v 331 (353)
T 4a6d_A 253 VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF 331 (353)
T ss_dssp SGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred ecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 99999832 35789999999999999999875332211110 011344788999999998764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.8e-09 Score=100.79 Aligned_cols=114 Identities=13% Similarity=0.025 Sum_probs=83.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++..++.+..+|+..++ ++||+|+++..++++..
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 5668999999999999999987532 578899999999999988667889999988875 68999999877766652
Q ss_pred -chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 308 -NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 308 -d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
....++.++.++| |+ ++++.++ ..+..+.++++..| +..
T Consensus 126 ~~~~~~l~~~~~~~--g~-~~~~~~~---------~~~~~~~~~~~~~g-~~~ 165 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MW-IYSIGNA---------KARDFLRREFSARG-DVF 165 (200)
T ss_dssp --CHHHHHHHHHHE--EE-EEEEEEG---------GGHHHHHHHHHHHE-EEE
T ss_pred chhHHHHHHHHHhc--Cc-EEEEEcC---------chHHHHHHHHHHCC-CEE
Confidence 2357899999998 55 4444321 11455777788887 433
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.3e-10 Score=110.40 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CCCC--CCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LPYP--SSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lpf~--d~sFDlV~~ 298 (617)
++.+|||||||+|..+..|++.......++++|+++.+++.|+++ +. ++.+..+|+.+ ++.. .++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 445799999999999999998733123788899999999999876 44 47888888644 3332 348999997
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.. ...+...++.++.++|||||++++...
T Consensus 143 d~----~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 143 DA----DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CS----CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CC----chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 53 233567799999999999999998764
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.2e-10 Score=109.12 Aligned_cols=99 Identities=13% Similarity=0.197 Sum_probs=77.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC-C-CCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL-P-YPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L-p-f~d~sFDlV~~s 299 (617)
++.+|||||||+|.++..|++... ...++++|+++.+++.|+++ +. ++.+..+|+... + ..+++||+|++.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 345699999999999999998533 23788899999999999875 43 578888887553 4 346899999965
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. ...+...++.++.++|||||++++...
T Consensus 150 ~----~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 150 A----AKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp T----TSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred C----cHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 3 234677899999999999999988543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-10 Score=106.59 Aligned_cols=99 Identities=8% Similarity=0.037 Sum_probs=72.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------------------
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------------------ 287 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------------------ 287 (617)
.++.+|||+|||+|.++..++++... ...++++|+++.+ ...++.+..+|+..++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------CCTTCEEEECCTTTTSSCCC-----------CHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------CCCCceEEEccccchhhhhhccccccccccchhh
Confidence 45678999999999999999886431 2367888888732 1234778888887776
Q ss_pred -------CCCCCeeEEEecccccccc---cch-------HHHHHHHHHhccCCeEEEEEeC
Q 039518 288 -------YPSSSFEMVHCSRCRVDWH---AND-------GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 288 -------f~d~sFDlV~~s~~l~h~~---~d~-------~~~L~el~RvLrPGG~Liis~p 331 (617)
+++++||+|+|..+.+... .+. ..++.++.++|||||.|++...
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 5678999999876443211 122 2378999999999999999763
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.2e-09 Score=110.40 Aligned_cols=131 Identities=11% Similarity=0.024 Sum_probs=95.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CCC-CCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LPY-PSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lpf-~d~sFDlV~~s~ 300 (617)
++.+|||+| |+|.++..++..+.. ..++++|+++.+++.|+++ |. ++.+..+|+.. +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 467899999 999999999887642 2678899999999999876 55 68888889877 764 457899999875
Q ss_pred cccccccchHHHHHHHHHhccCCeE-EEEEeCCCCCCCCCChhhHHHHHHHHH-HcCceEEEEeeeeE
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGY-FVYSAPPAYRKDKDYPLIWDKLVNLTT-AMCWKLIARKIQTA 366 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~-Liis~p~~~~~~~~~~~~W~~le~La~-~~gw~~v~~~~~~~ 366 (617)
..... ....++.++.++|||||. ++++... .......|..+.+++. ..|+.......+..
T Consensus 250 p~~~~--~~~~~l~~~~~~LkpgG~~~~~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 311 (373)
T 2qm3_A 250 PETLE--AIRAFVGRGIATLKGPRCAGYFGITR----RESSLDKWREIQKLLLNEFNVVITDIIRNFN 311 (373)
T ss_dssp CSSHH--HHHHHHHHHHHTBCSTTCEEEEEECT----TTCCHHHHHHHHHHHHHTSCCEEEEEEEEEE
T ss_pred CCchH--HHHHHHHHHHHHcccCCeEEEEEEec----CcCCHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 43322 257899999999999994 4665532 1122223566778777 88987765444433
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.6e-10 Score=109.20 Aligned_cols=96 Identities=11% Similarity=0.194 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCC-CeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSS-SFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~-sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..+++... ..++++|+++.+++.|+++ +. ++.+..+|. ..+++++ .||+|++..
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTA 166 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECS
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECC
Confidence 4556799999999999999988753 3677889999999999875 33 467777776 4455544 499999987
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++.++. .++.++|+|||.++++.++
T Consensus 167 ~~~~~~-------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 167 GAPKIP-------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp BBSSCC-------HHHHHTEEEEEEEEEEECS
T ss_pred cHHHHH-------HHHHHhcCCCcEEEEEEec
Confidence 766554 3789999999999999863
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-10 Score=112.93 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=76.2
Q ss_pred CCeEEEECCCCcHHHHHhccC----CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC---CCCC-CCeeEEEecc
Q 039518 229 VFQVLDVGCGVASFSAFLLPL----DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL---PYPS-SSFEMVHCSR 300 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~----gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L---pf~d-~sFDlV~~s~ 300 (617)
+.+|||||||+|..+..|++. +. ...++++|+++.+++.|+....++.+..+|...+ ++.+ .+||+|++..
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~-~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGI-DCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTC-CCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCC-CCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 346999999999999999875 22 2367888999999888775455688899998774 5444 4799999764
Q ss_pred cccccccchHHHHHHHHH-hccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDR-VLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~R-vLrPGG~Liis~ 330 (617)
. | .+...++.++.| +|||||++++.+
T Consensus 161 ~--~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 161 A--H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp S--C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred c--h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 3 3 367789999998 999999999965
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-09 Score=109.58 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCC-CcEEEeeecCCcHHHHHHHHHh---C----C--C----------------------
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLD-IQTMSFAPKDGHENQIQFALER---G----I--G---------------------- 275 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~g-v~~v~v~~iDis~~~lq~A~er---g----~--~---------------------- 275 (617)
++.+|||+|||+|.++..+++.. .....++++|+++.+++.|+++ . + .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 45679999999999999998761 1234789999999999999864 1 1 1
Q ss_pred ---cE-------------EEEecCCCCCC-----CCCCeeEEEecccccccc--------cchHHHHHHHHHhccCCeEE
Q 039518 276 ---AM-------------ISALSTKQLPY-----PSSSFEMVHCSRCRVDWH--------ANDGILLKEVDRVLRPNGYF 326 (617)
Q Consensus 276 ---~~-------------~~~~d~~~Lpf-----~d~sFDlV~~s~~l~h~~--------~d~~~~L~el~RvLrPGG~L 326 (617)
+. +..+|+..... ..++||+|+|+..+++.. +....++.++.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 44 77788755321 345899999986554433 22457999999999999999
Q ss_pred EEEeC
Q 039518 327 VYSAP 331 (617)
Q Consensus 327 iis~p 331 (617)
+++..
T Consensus 211 ~~~~~ 215 (250)
T 1o9g_A 211 AVTDR 215 (250)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 99654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-09 Score=108.67 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=89.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..++++.. ...+.++|+++.+++.|+++ ++ ++.+..+|+.+++. .++||+|++...
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p 195 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV 195 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc
Confidence 4667899999999999999998743 23678889999999988875 43 56788888877744 678999998743
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
. +...++.++.++|+|||.++++.........+ ...+.++.+.+..+++..
T Consensus 196 ~-----~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 196 H-----KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYE--RPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp S-----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTT--HHHHHHHHHHHHTTEEEE
T ss_pred c-----cHHHHHHHHHHHcCCCCEEEEEEcCccccccc--cHHHHHHHHHHHhCCeeE
Confidence 2 56678999999999999999987532211111 112335555555565543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=115.57 Aligned_cols=126 Identities=10% Similarity=0.058 Sum_probs=87.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC---cEEEEecCCCCCC----CCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG---AMISALSTKQLPY----PSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~---~~~~~~d~~~Lpf----~d~sFDlV 296 (617)
++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ ++. +.+..+|+.++.. ..++||+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 455799999999999999998875 678889999999998875 442 6777777655421 15689999
Q ss_pred Eecccc---------cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHH-HHHHHHHcCceEE
Q 039518 297 HCSRCR---------VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDK-LVNLTTAMCWKLI 359 (617)
Q Consensus 297 ~~s~~l---------~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~-le~La~~~gw~~v 359 (617)
++.... .++..+...++.++.++|+|||+++++....... ....+.. +.+.++..|+++.
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~---~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRA---SFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTS---CHHHHHHHHHHHTTTSCSEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCC---CHHHHHHHHHHHHHHcCCeEE
Confidence 984321 1223356789999999999999988876432211 1111222 4445557787765
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=114.16 Aligned_cols=122 Identities=15% Similarity=0.002 Sum_probs=90.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|.++..++........+.++|+++.+++.|+++ ++ .+.+..+|+.+++.+.+.||+|+++..
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP 281 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPP 281 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC
Confidence 3556799999999999999988641112678889999999999876 44 588999999998877788999998643
Q ss_pred ccccc-------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 302 RVDWH-------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 302 l~h~~-------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
..... .....++.++.++|+|||.+++.++. ...+..+.+ .||+...
T Consensus 282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~-----------~~~~~~~~~-~g~~~~~ 335 (354)
T 3tma_A 282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR-----------PALLKRALP-PGFALRH 335 (354)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC-----------HHHHHHHCC-TTEEEEE
T ss_pred CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC-----------HHHHHHHhh-cCcEEEE
Confidence 22111 11267899999999999999998862 122445555 7887654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.94 E-value=7e-10 Score=109.87 Aligned_cols=98 Identities=11% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCCC-C-CCCCCeeEEEec
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQL-P-YPSSSFEMVHCS 299 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~L-p-f~d~sFDlV~~s 299 (617)
+.+|||||||+|..+..|++.-.....++++|+++.+++.|+++ +. ++.+..+|+.++ + +++++||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34799999999999999987522123688899999999999875 44 377777775443 2 346899999975
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
. ...+...++.++.++|||||++++..
T Consensus 137 ~----~~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 137 V----SPMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp C----CTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred C----cHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 3 23356679999999999999999954
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.8e-09 Score=111.88 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=89.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++..++..+... .+.++|+++.+++.|+++ |+ .+.+..+|+.++++++++||+|+++..
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~-~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSG-EIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCS-CEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 45679999999999999999886521 577889999999999876 55 688999999999988889999999743
Q ss_pred ccccc------cc-hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWH------AN-DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~------~d-~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
..... .+ ...++.++.++| ||.+++..+. ...+++.+.+.||+....
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~-----------~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE-----------KKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC-----------HHHHHHHHHHTTEEEEEE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC-----------HHHHHHHHHHcCCEEEEE
Confidence 22211 11 256889999999 4555554431 345778888999997653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.93 E-value=9.5e-10 Score=115.01 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=75.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC----------------CCcEEEEecCCCC--
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG----------------IGAMISALSTKQL-- 286 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg----------------~~~~~~~~d~~~L-- 286 (617)
+.++.+|||+|||+|.++..+++. +... .+.++|+++.+++.|+++. .++.+..+|+..+
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQG-RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTC-EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 346778999999999999999886 4322 6788899999999998752 3578888888776
Q ss_pred CCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 287 PYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 287 pf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++++++||+|++.. .++..++.++.++|+|||.+++..+
T Consensus 182 ~~~~~~fD~V~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 182 DIKSLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ------EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred ccCCCCeeEEEECC------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 56677899999753 1344589999999999999999875
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=107.75 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=75.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCc-----EEEeeecCCcHHHHHHHHHhC----------CCcEEEEecCCCCCCCC-
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQ-----TMSFAPKDGHENQIQFALERG----------IGAMISALSTKQLPYPS- 290 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~-----~v~v~~iDis~~~lq~A~erg----------~~~~~~~~d~~~Lpf~d- 290 (617)
.++.+|||||||+|.++..+++.... ...++++|+++.+++.|+++. .++.+..+|... ++++
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 161 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPN 161 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGG
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcC
Confidence 46678999999999999999874211 026788899999999988752 357788888765 4554
Q ss_pred CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 291 SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++||+|++...+.+.. .++.++|||||.+++...
T Consensus 162 ~~fD~I~~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH-------HHHHHHhcCCCEEEEEEe
Confidence 7899999887665543 688999999999999875
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.92 E-value=9.1e-10 Score=107.56 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC-CC-C----CCCeeE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL-PY-P----SSSFEM 295 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L-pf-~----d~sFDl 295 (617)
++.+|||||||+|.++..|++.......++++|+++.+++.|+++ +. .+.+..+|+... +. . .++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 345699999999999999998732123788899999999998876 43 377888776332 21 1 178999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|++.. ...+...++.++.++|||||++++...
T Consensus 144 v~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 144 IYIDA----DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEECS----CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99643 234677899999999999999999764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-09 Score=105.84 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=75.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CCCCCCCeeEEEeccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LPYPSSSFEMVHCSRC 301 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lpf~d~sFDlV~~s~~ 301 (617)
+.+|||||||+|..+..+++.......++++|+++.+++.|+++ +. .+.+..+|..+ ++..++ ||+|++..
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~- 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC- 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET-
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC-
Confidence 34699999999999999988632123778889999999998865 33 36777877644 354456 99999763
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
...+...++.++.++|||||++++..
T Consensus 135 ---~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 ---DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ---TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred ---ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 13467889999999999999999864
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=110.44 Aligned_cols=128 Identities=12% Similarity=0.062 Sum_probs=88.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCC----CCCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPY----PSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf----~d~sFDlV~ 297 (617)
.++.+|||+|||+|..+..+++.......++++|+++.+++.++++ +. ++.+..+|+..++. .+++||+|+
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 4567899999999999999987422223678889999999988775 54 57788888766653 267899999
Q ss_pred eccccc-----------------ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH-cCceEE
Q 039518 298 CSRCRV-----------------DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA-MCWKLI 359 (617)
Q Consensus 298 ~s~~l~-----------------h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~-~gw~~v 359 (617)
+.-... +.......+|.++.++|||||.+++++...... ++. +.+..++++ .+|+++
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~--ene---~~v~~~l~~~~~~~~~ 236 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE--ENE---EVIKYILQKRNDVELI 236 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT--SSH---HHHHHHHHHCSSEEEE
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH--HhH---HHHHHHHHhCCCcEEe
Confidence 751110 111345789999999999999999998644332 222 235555544 345544
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-09 Score=115.35 Aligned_cols=130 Identities=13% Similarity=0.138 Sum_probs=91.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlV~~ 298 (617)
..++.+|||+|||+|..+..+++.......++++|+++.+++.++++ |. ++.+..+|+..++ +++++||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 34667899999999999999987532212678889999999888776 55 5778888887776 55578999995
Q ss_pred c-----ccccccccch----------------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-Cc
Q 039518 299 S-----RCRVDWHAND----------------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CW 356 (617)
Q Consensus 299 s-----~~l~h~~~d~----------------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw 356 (617)
. ...++-.++. ..+|.++.++|||||.+++++...... ++ -+.+..++++. +|
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~--en---e~~v~~~l~~~~~~ 411 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE--EN---EKNIRWFLNVHPEF 411 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHCSSC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh--hH---HHHHHHHHHhCCCC
Confidence 1 1111111111 568999999999999999988644321 11 23466666665 67
Q ss_pred eEEE
Q 039518 357 KLIA 360 (617)
Q Consensus 357 ~~v~ 360 (617)
+.+.
T Consensus 412 ~~~~ 415 (450)
T 2yxl_A 412 KLVP 415 (450)
T ss_dssp EECC
T ss_pred EEee
Confidence 6553
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=118.48 Aligned_cols=103 Identities=7% Similarity=-0.060 Sum_probs=76.5
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHH-------HHh----C---CCcEEEEecCCCC--CC-
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFA-------LER----G---IGAMISALSTKQL--PY- 288 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A-------~er----g---~~~~~~~~d~~~L--pf- 288 (617)
+.++.+|||||||+|.++..+++.... ..+.++|+++.+++.| +++ | .++.+..++.... ++
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~ 318 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 318 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence 356778999999999999999886221 2678889999988877 543 4 3466666643322 22
Q ss_pred -CCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 289 -PSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 289 -~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
..++||+|+++..+ +.++...+|.++.++|||||.+++..+
T Consensus 319 ~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp HHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 24789999987654 334777889999999999999999754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-08 Score=93.99 Aligned_cols=120 Identities=12% Similarity=0.039 Sum_probs=89.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.++.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ +.++.+..+|+..++ ++||+|+++...
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~ 122 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPF 122 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCC
Confidence 35668999999999999999988643 678899999999999886 336788888888775 489999998665
Q ss_pred cccc-cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 303 VDWH-ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+... .....++.++.++| ||.+++..+ .....+.+.+.++..||++...
T Consensus 123 ~~~~~~~~~~~l~~~~~~l--~~~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 123 GSQRKHADRPFLLKAFEIS--DVVYSIHLA--------KPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SSSSTTTTHHHHHHHHHHC--SEEEEEEEC--------CHHHHHHHHHHHHHTTEEEEEE
T ss_pred ccccCCchHHHHHHHHHhc--CcEEEEEeC--------CcCCHHHHHHHHHHCCCeEEEE
Confidence 5543 23457899999999 665554321 1112445777888899876553
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-09 Score=106.34 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=77.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC-CCC--CCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL-PYP--SSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L-pf~--d~sFDlV~~ 298 (617)
++.+|||+|||+|.++..+++... ...++++|+++.+++.|+++ +. .+.+..+|+... +.. +++||+|++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 345799999999999999988742 23788899999999999876 44 477777777553 432 578999997
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.... .+...++.++.++|+|||.+++.+
T Consensus 133 ~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAK----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 6432 367889999999999999999974
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=102.49 Aligned_cols=120 Identities=16% Similarity=0.074 Sum_probs=92.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||||||+|.++..+++.+.. ..+.++|+++.+++.|+++ ++ .+.+..+|......+++.||+|+....
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4567999999999999999998753 3788999999999999876 44 378888887665544457999885542
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.- +-...+|.+..+.|+++|+|+++.. .. ...+.+.+.+.||.++..
T Consensus 100 Gg---~lI~~IL~~~~~~l~~~~~lIlqp~--------~~--~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 100 GG---RLIADILNNDIDKLQHVKTLVLQPN--------NR--EDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp CH---HHHHHHHHHTGGGGTTCCEEEEEES--------SC--HHHHHHHHHHTTEEEEEE
T ss_pred ch---HHHHHHHHHHHHHhCcCCEEEEECC--------CC--hHHHHHHHHHCCCEEEEE
Confidence 21 2356688899999999999999763 11 456888899999998874
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-10 Score=115.74 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=69.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-------CcEEE--EecCCCCCCCCCCeeEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-------GAMIS--ALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-------~~~~~--~~d~~~Lpf~d~sFDlV 296 (617)
+.++.+|||+|||+|.++..++++ . .+.++|+++ ++..++++.. ++.+. .+|+..+| +++||+|
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~-~---~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V 152 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ-P---NVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTV 152 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS-T---TEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc-C---CEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEE
Confidence 356788999999999999999987 2 455667776 4333332221 56777 78888776 6789999
Q ss_pred Eecccccccccc----hH---HHHHHHHHhccCCe--EEEEEe
Q 039518 297 HCSRCRVDWHAN----DG---ILLKEVDRVLRPNG--YFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d----~~---~~L~el~RvLrPGG--~Liis~ 330 (617)
+|..+ ++..+ .. .+|.++.++||||| .|++..
T Consensus 153 vsd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 153 LCDIG--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp EECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EECCC--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 99754 22211 11 37899999999999 999865
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-09 Score=104.50 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=75.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC-C-CC---CCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL-P-YP---SSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L-p-f~---d~sFDlV 296 (617)
++.+|||||||+|.++..+++.......++++|+++.+++.|+++ +. .+.+..+|+... + ++ .++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 345799999999999999998733223788899999999988865 44 377888776432 1 11 2679999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++... ......++.++.++|+|||++++...
T Consensus 138 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 138 FIDAD----KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EECSC----GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEcCC----cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 97642 23567899999999999999988754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.7e-10 Score=124.39 Aligned_cols=98 Identities=15% Similarity=0.084 Sum_probs=80.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCCC--CCCCCCeeEEEeccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQL--PYPSSSFEMVHCSRC 301 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~L--pf~d~sFDlV~~s~~ 301 (617)
+.+|||||||.|.++..|+++|. .|+++|.++.+++.|+.+ + .++.+.+++++++ ++.+++||+|+|..+
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 45799999999999999999987 678889999999988764 3 5788999998887 467889999999999
Q ss_pred ccccccchH--HHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDG--ILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~--~~L~el~RvLrPGG~Liis~ 330 (617)
++|.. ++. ..+..+.+.|+++|..++..
T Consensus 144 ~ehv~-~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 144 FHHIV-HLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHHH-HHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred hhcCC-CHHHHHHHHHHHHHhccccceeeEE
Confidence 99876 443 34566778888888766654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-09 Score=116.07 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..+++.+. ..++++|+++ +++.|+++ ++ ++.+..+|+.+++++ ++||+|+|+.
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~ 232 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEP 232 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred cCCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeC
Confidence 3566899999999999999988753 2678889998 87777664 43 478889998887765 5799999976
Q ss_pred cccccc-cchHHHHHHHHHhccCCeEEEEE
Q 039518 301 CRVDWH-ANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el~RvLrPGG~Liis 329 (617)
...++. ++....+.++.++|+|||++++.
T Consensus 233 ~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 233 MGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred chHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 555554 34456788999999999999864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.6e-10 Score=114.02 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=68.3
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-------CCcEEE--EecCCCCCCCCCCeeEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG-------IGAMIS--ALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg-------~~~~~~--~~d~~~Lpf~d~sFDlV 296 (617)
+.++.+|||+|||+|.++..++++ . .|.++|+++ ++..++++. .++.+. .+|+..++ +++||+|
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~-~---~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V 144 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR-P---HVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVI 144 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS-T---TEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc-C---cEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEE
Confidence 356778999999999999999987 2 455667666 322222221 146777 77888776 6789999
Q ss_pred Eecccccccc---cchH---HHHHHHHHhccCCe--EEEEEe
Q 039518 297 HCSRCRVDWH---ANDG---ILLKEVDRVLRPNG--YFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~---~d~~---~~L~el~RvLrPGG--~Liis~ 330 (617)
+|..+ .+.. .+.. .+|.++.++||||| .|++..
T Consensus 145 ~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 145 MCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 99754 2211 1111 37899999999999 999966
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-08 Score=102.53 Aligned_cols=120 Identities=10% Similarity=0.045 Sum_probs=91.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||||||+|.++..|++.+.. ..+.++|+++.+++.|+++ ++ .+.+..+|......++.+||+|+....
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTA-SFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4567999999999999999998653 3788999999999999876 54 367888886555444446999986542
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.- +-...+|.+..+.|+++|+|+++.. .. ...+.+.+.+.||.++..
T Consensus 100 Gg---~lI~~IL~~~~~~L~~~~~lIlq~~--------~~--~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 100 GG---TLIRTILEEGAAKLAGVTKLILQPN--------IA--AWQLREWSEQNNWLITSE 146 (244)
T ss_dssp CH---HHHHHHHHHTGGGGTTCCEEEEEES--------SC--HHHHHHHHHHHTEEEEEE
T ss_pred ch---HHHHHHHHHHHHHhCCCCEEEEEcC--------CC--hHHHHHHHHHCCCEEEEE
Confidence 21 2345688999999999999999762 11 456888899999998763
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-09 Score=110.30 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCC--CCCCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQL--PYPSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~L--pf~d~sFDlV 296 (617)
.+.+|||||||+|.++..|++... ...++++|+++.+++.|+++. .++.+..+|+... .+++++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 456899999999999999998732 237888999999999998763 3577888886543 2346789999
Q ss_pred Eecccccccc--cc--hHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWH--AN--DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~--~d--~~~~L~el~RvLrPGG~Liis~p 331 (617)
++.. ..++. .+ ...+++++.++|+|||.+++...
T Consensus 199 i~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 199 IVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236 (334)
T ss_dssp EECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EECC-CCccCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9853 22222 11 36899999999999999999743
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.9e-10 Score=119.36 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=75.0
Q ss_pred CCeEEEECCC------CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCC------CCCeeE
Q 039518 229 VFQVLDVGCG------VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYP------SSSFEM 295 (617)
Q Consensus 229 g~rVLDIGCG------tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~------d~sFDl 295 (617)
+.+||||||| +|..+..++++ ... ..|+++|+++.+. ....++.+.++|+.++|+. +++||+
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~-a~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR-GQIYGLDIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTT-CEEEEEESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 4579999999 66666666654 222 3788889998873 2345689999999998887 789999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|+|.. .++ ..+...+|+++.|+|||||++++.+.
T Consensus 292 Visdg-sH~-~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 292 VIDDG-SHI-NAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp EEECS-CCC-HHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred EEECC-ccc-chhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99864 444 45788999999999999999999864
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-09 Score=116.85 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=89.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC-CCCCCeeEEEe---
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP-YPSSSFEMVHC--- 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp-f~d~sFDlV~~--- 298 (617)
.++.+|||+|||+|..+..|+++......+.++|+++.+++.++++ |+.+.+..+|+..++ +.+++||+|++
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~P 179 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCC
Confidence 4677899999999999999987632222678889999999988775 666777777776665 34678999995
Q ss_pred -ccc-cc--------cccc--------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-CceEE
Q 039518 299 -SRC-RV--------DWHA--------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CWKLI 359 (617)
Q Consensus 299 -s~~-l~--------h~~~--------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw~~v 359 (617)
+.. .+ .+.. ....+|.++.++|||||.|++++-..... ++ -+.+..++++. +|+++
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e--En---e~vv~~~l~~~~~~~l~ 254 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE--EN---EGVVAHFLKAHPEFRLE 254 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHCTTEEEE
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh--cC---HHHHHHHHHHCCCcEEE
Confidence 210 11 1110 01568999999999999999988644322 22 23366777766 57665
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 255 ~ 255 (464)
T 3m6w_A 255 D 255 (464)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=109.63 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=70.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH----HhCC--CcEEEEecCCCCCCCCCCeeEEEecc-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL----ERGI--GAMISALSTKQLPYPSSSFEMVHCSR- 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~----erg~--~~~~~~~d~~~Lpf~d~sFDlV~~s~- 300 (617)
++++|||||||+|.++..+++.|.. .|.++|.++ +++.|+ .++. .+.+..++++++.++ +.||+|+|-.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~ 158 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWM 158 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecc
Confidence 3456999999999999988888764 455666664 445454 3454 378888899888876 5799999732
Q ss_pred --cccccccchHHHHHHHHHhccCCeEEEEE
Q 039518 301 --CRVDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 301 --~l~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
++++ ......++....|+|+|||.++-.
T Consensus 159 ~~~l~~-e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 159 GYGLLH-ESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp BTTBTT-TCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccc-cchhhhHHHHHHhhCCCCceECCc
Confidence 2222 234678889999999999998753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-08 Score=100.92 Aligned_cols=135 Identities=7% Similarity=0.048 Sum_probs=93.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.+|.+|||+|||+|.++..++.++.. .+.++|+++.+++.++++ ++. +.+..+|+..++ ..+.||.|+++.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~--~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~ 200 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY 200 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECC
Confidence 35667999999999999999987643 577889999999988775 443 667778887765 357899998653
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeeeeEEEeec
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKE 371 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~~~IwqKp 371 (617)
+.....+|..+.++|+|||.+.+........... ...+.++++++..|++........+-+-.|
T Consensus 201 -----p~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~--~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP 264 (278)
T 3k6r_A 201 -----VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPR--EPFETFKRITKEYGYDVEKLNELKIKRYAP 264 (278)
T ss_dssp -----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTT--TTHHHHHHHHHHTTCEEEEEEEEEEEEETT
T ss_pred -----CCcHHHHHHHHHHHcCCCCEEEEEeeecccccch--hHHHHHHHHHHHcCCcEEEEEEEEEEeECc
Confidence 2234567888999999999987643211111111 225668888999999875544333333333
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-09 Score=102.82 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcE--------EEeeecCCcHHHHHHHHHhCCCcEEE-EecCCCCC--------CC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQT--------MSFAPKDGHENQIQFALERGIGAMIS-ALSTKQLP--------YP 289 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~--------v~v~~iDis~~~lq~A~erg~~~~~~-~~d~~~Lp--------f~ 289 (617)
.++.+|||+|||+|.++..|+++.... ..+.++|+++.+ ....+.+. .+|+...+ ++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence 457789999999999999998873210 267788988732 11235666 66665432 34
Q ss_pred CCCeeEEEeccccc---ccccch-------HHHHHHHHHhccCCeEEEEEeC
Q 039518 290 SSSFEMVHCSRCRV---DWHAND-------GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 290 d~sFDlV~~s~~l~---h~~~d~-------~~~L~el~RvLrPGG~Liis~p 331 (617)
+++||+|+|..+.+ ++..+. ..++.++.++|||||.+++...
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 56899999864322 222223 4789999999999999999864
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3e-08 Score=99.05 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=90.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecC-CCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALST-KQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~-~~Lpf~d~sFDlV~~s~ 300 (617)
++.+|||||||+|.++..++..+.. ..+.++|+++.+++.|+++ ++ .+.+..+|. +.++. ...||+|+.+.
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG 92 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAG 92 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcC
Confidence 4567999999999999999998753 3788999999999999875 54 367777776 44442 22699998654
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
..- .-...+|.+..+.|+|+|+|+++.. .. ...+.+.+.+.||.++..
T Consensus 93 ~Gg---~~i~~Il~~~~~~L~~~~~lVlq~~--------~~--~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 93 MGG---RLIARILEEGLGKLANVERLILQPN--------NR--EDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp ECH---HHHHHHHHHTGGGCTTCCEEEEEES--------SC--HHHHHHHHHHTTEEEEEE
T ss_pred CCh---HHHHHHHHHHHHHhCCCCEEEEECC--------CC--HHHHHHHHHHCCCEEEEE
Confidence 211 1246789999999999999999653 11 456888899999998874
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.6e-09 Score=103.55 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCC-CC-------------
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQ-LP------------- 287 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~-Lp------------- 287 (617)
++.+|||||||+|.++..+++.......++++|+++.+++.|+++ +.. +.+..+|... ++
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 345799999999999999988632223778889999999998876 442 6777776533 12
Q ss_pred -CCC--CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 288 -YPS--SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 288 -f~d--~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|++ ++||+|++... ..+...++.++.++|+|||.+++..
T Consensus 140 ~f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 78999997642 2356689999999999999999975
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.80 E-value=9.3e-09 Score=111.59 Aligned_cols=127 Identities=12% Similarity=0.138 Sum_probs=89.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC--CCCCCeeEEEec-
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP--YPSSSFEMVHCS- 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp--f~d~sFDlV~~s- 299 (617)
.++.+|||+|||+|..+..+++.... ..++++|+++.+++.++++ +.++.+..+|...++ +++++||+|++.
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 46678999999999999999987543 3788889999988888765 667888888887776 566789999952
Q ss_pred ---c-cccccccch----------------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc-CceE
Q 039518 300 ---R-CRVDWHAND----------------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM-CWKL 358 (617)
Q Consensus 300 ---~-~l~h~~~d~----------------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~-gw~~ 358 (617)
. ..++-.++. ..+|.++.++|||||++++++...... +. -..+..++++. +|+.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~--en---e~~v~~~l~~~~~~~~ 398 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE--EN---SLQIKAFLQRTADAEL 398 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHCTTCEE
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh--hH---HHHHHHHHHhCCCCEE
Confidence 1 111111111 468999999999999999988543322 11 23355555554 5665
Q ss_pred E
Q 039518 359 I 359 (617)
Q Consensus 359 v 359 (617)
+
T Consensus 399 ~ 399 (429)
T 1sqg_A 399 C 399 (429)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-09 Score=111.33 Aligned_cols=126 Identities=11% Similarity=0.058 Sum_probs=88.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCC-CCC---CCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQ-LPY---PSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~-Lpf---~d~sFDlV 296 (617)
++.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ ++ ++.+..+|+.+ ++. ..++||+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~--~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 4567999999999999999987643 678889999999988875 44 57788888654 221 24589999
Q ss_pred Eeccccc--------ccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceE
Q 039518 297 HCSRCRV--------DWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKL 358 (617)
Q Consensus 297 ~~s~~l~--------h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~ 358 (617)
++.-... ....+...++.++.++|+|||.++++..+... .....++.+...+...|.+.
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~---~~~~~~~~i~~~~~~~g~~~ 356 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM---TVSQFKKQIEKGFGKQKHTY 356 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS---CHHHHHHHHHHHHTTCCCEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC---CHHHHHHHHHHHHHHcCCcE
Confidence 9853221 11123455788889999999999998854332 11223444666777777773
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.4e-09 Score=103.68 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=75.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCC----CCCCCC--CCeeEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTK----QLPYPS--SSFEMV 296 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~----~Lpf~d--~sFDlV 296 (617)
+.+|||||||+|..+..+++.......++++|+++.+++.|+++ +. .+.+..+++. .++..+ ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 34699999999999999988632223678889999999998875 44 3677777743 233333 789999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++... ..+...++.++.++|+|||++++...
T Consensus 153 ~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 153 FIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EECSC----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 97632 34667899999999999999999754
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.80 E-value=8e-09 Score=105.71 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~ 297 (617)
.+.+|||||||+|.++..+++... ...++.+|+++.+++.|+++. .++.+..+|+.. ++..+++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 346799999999999999998721 237888999999999998753 247788888644 343467899999
Q ss_pred ecccccccccc----hHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHAN----DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~d----~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.. ..++... ...+++++.++|+|||.+++...
T Consensus 154 ~d~-~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 853 3332211 26799999999999999999753
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-08 Score=107.92 Aligned_cols=125 Identities=14% Similarity=0.010 Sum_probs=85.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCC-CCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQL-PYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~L-pf~d~sFDlV~~s~~l 302 (617)
+|.+|||+|||+|.++..+++.+.. ++++|+++.+++.|+++ ++...+..+|+.++ +...+.||+|++.-..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 4678999999999999999998753 78889999999998875 66656777776443 2223349999986322
Q ss_pred ccc--------ccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceE
Q 039518 303 VDW--------HANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKL 358 (617)
Q Consensus 303 ~h~--------~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~ 358 (617)
..- ..+...++..+.++|+|||.+++++..... ......+.+...+...|.+.
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~---~~~~f~~~v~~a~~~~g~~~ 351 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL---RLEDLLEVARRAAADLGRRL 351 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS---CHHHHHHHHHHHHHHHTCCE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC---CHHHHHHHHHHHHHHhCCeE
Confidence 111 123457899999999999999987643221 11111233566666666543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.5e-09 Score=106.27 Aligned_cols=101 Identities=14% Similarity=0.014 Sum_probs=75.3
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~~ 298 (617)
+.+|||||||+|.++..+++... ...++++|+++.+++.|+++. .++.+..+|+.. ++..+++||+|++
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 46799999999999999998732 237888999999999998763 357788887644 3444678999997
Q ss_pred ccccccccc-----chHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHA-----NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~-----d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.. ..++.. ....+++++.++|+|||.+++...
T Consensus 170 d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 170 DS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 52 222111 226789999999999999999754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.8e-10 Score=110.22 Aligned_cols=99 Identities=10% Similarity=-0.019 Sum_probs=74.1
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC-CCC-----CCCeeEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL-PYP-----SSSFEMV 296 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L-pf~-----d~sFDlV 296 (617)
+.+|||||||+|..+..|++.......++++|+++.+++.|+++ +. ++.+..+|+... +.. +++||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 34699999999999999988532123677888888887766654 44 478888886443 221 4789999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++... ..+...++.++.++|||||++++...
T Consensus 141 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 141 FIDAD----KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEESC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEcCC----hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 97532 34567799999999999999999754
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=7.4e-09 Score=106.33 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=77.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCC-CCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQL-PYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~L-pf~d~sFDlV~ 297 (617)
.+.+|||||||+|.++..+++... ...++++|+++.+++.|+++. .++.+..+|+... +..+++||+|+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 456899999999999999987742 237888999999999999863 3467777776442 22367899999
Q ss_pred eccccccccc--ch--HHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHA--ND--GILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~--d~--~~~L~el~RvLrPGG~Liis~p 331 (617)
+.. ..++.. .. ..+++++.++|+|||.+++...
T Consensus 157 ~d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEC-CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 853 233321 11 6899999999999999999754
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=106.71 Aligned_cols=101 Identities=15% Similarity=0.056 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----------CCcEEEEecCCC-CCCCCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----------IGAMISALSTKQ-LPYPSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----------~~~~~~~~d~~~-Lpf~d~sFDlV 296 (617)
.+.+|||||||+|.++..+++... ...++++|+++.+++.|+++. .++.+..+|+.. ++..+++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 346799999999999999998732 237888999999999998752 347788888654 34456789999
Q ss_pred Eeccccccc---c--cc--hHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDW---H--AN--DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~---~--~d--~~~~L~el~RvLrPGG~Liis~ 330 (617)
++.. ..++ . .. ...+++++.++|+|||.+++..
T Consensus 156 i~d~-~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECC-CCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 9864 3344 1 11 3689999999999999999874
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-09 Score=107.73 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=73.3
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~~ 298 (617)
+.+|||||||+|.++..+++... ...++.+|+++.+++.|+++. .++.+..+|+.. ++..+++||+|++
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 46799999999999999998732 337888999999999999863 236777777644 3334678999997
Q ss_pred cccccccccch----HHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHAND----GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~----~~~L~el~RvLrPGG~Liis~ 330 (617)
.. ..++.... ..+++++.++|+|||.+++..
T Consensus 188 d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC-C-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 53 33332111 578999999999999999975
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=9.6e-09 Score=106.77 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~ 297 (617)
.+.+|||||||+|.++..++++.. ...++.+|+++.+++.|+++. .++.+..+|+.. ++..+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 456899999999999999998742 237888999999999998752 347788887644 344567899999
Q ss_pred eccccccccc----chHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.. ..++.. ....+++++.++|+|||.+++..
T Consensus 174 ~d~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-CCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 753 233221 12468999999999999999976
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=106.80 Aligned_cols=120 Identities=12% Similarity=0.154 Sum_probs=85.1
Q ss_pred hHHHHHHHhhhhh---ccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-----CCcEE
Q 039518 207 PEYIQRLGNMMTN---ETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG-----IGAMI 278 (617)
Q Consensus 207 ~~Y~~~L~~~L~~---~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg-----~~~~~ 278 (617)
-.|.+.+...+.. .... ....+|||||||+|.++.+++++.... .++.+|+++.+++.|+++. .++.+
T Consensus 68 ~~Y~e~m~~~~~~l~~~~p~---p~~~rVLdIG~G~G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v 143 (317)
T 3gjy_A 68 FEYMRWIATGARAFIDAHQD---ASKLRITHLGGGACTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKI 143 (317)
T ss_dssp SHHHHHHHHHHHHHHHHHSC---GGGCEEEEESCGGGHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEE
T ss_pred hHHHHHHHHHHHhhcccCCC---CCCCEEEEEECCcCHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEE
Confidence 3677766655432 1111 012379999999999999999843322 6788999999999999873 24778
Q ss_pred EEecCCCC--CCCCCCeeEEEecccccccc-c---chHHHHHHHHHhccCCeEEEEEeC
Q 039518 279 SALSTKQL--PYPSSSFEMVHCSRCRVDWH-A---NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 279 ~~~d~~~L--pf~d~sFDlV~~s~~l~h~~-~---d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.++|...+ .+++++||+|++.. ..+.. . ....+++++.++|+|||.|++...
T Consensus 144 ~~~Da~~~l~~~~~~~fDvIi~D~-~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 144 RVDDARMVAESFTPASRDVIIRDV-FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp EESCHHHHHHTCCTTCEEEEEECC-STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECcHHHHHhhccCCCCCEEEECC-CCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 88886543 34568899999753 22221 1 136899999999999999998763
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=107.33 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=76.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~ 297 (617)
.+.+|||||||+|.++..+++... ...++++|+++.+++.|+++. .++.+..+|... ++..+++||+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 346799999999999999998632 237888999999999999863 246777777644 233457899999
Q ss_pred ecccccccc--cc--hHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWH--AN--DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~--~d--~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.. ..++. .. ...+++++.++|+|||.+++...
T Consensus 195 ~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 195 VDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EEC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 763 22322 11 16899999999999999999764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-09 Score=105.38 Aligned_cols=100 Identities=10% Similarity=0.186 Sum_probs=65.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCC---CCC---CCCeeE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQL---PYP---SSSFEM 295 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~L---pf~---d~sFDl 295 (617)
++.+|||+|||+|.++..++++.. ...++++|+++.+++.|+++ +.. +.+..+|+.+. +++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 466899999999999998887621 13678889999999999875 443 78888887652 444 268999
Q ss_pred EEeccccccccc--------------chHHHHHHHHHhccCCeEEEE
Q 039518 296 VHCSRCRVDWHA--------------NDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 296 V~~s~~l~h~~~--------------d~~~~L~el~RvLrPGG~Lii 328 (617)
|+|+...++... ....++.++.|+|||||.+.+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 999854433220 112345566666666665544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-09 Score=105.61 Aligned_cols=98 Identities=10% Similarity=0.048 Sum_probs=75.0
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CCC------CCCCeeE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LPY------PSSSFEM 295 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lpf------~d~sFDl 295 (617)
+.+|||||||+|..+..|++.......++++|+++.+++.|+++ +. ++.+..+|+.+ ++. ++++||+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 34699999999999999987632123788889999999998875 44 46777777643 232 1578999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|++... ..+...++.++.++|||||++++..
T Consensus 160 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 160 IFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 997532 3467789999999999999999864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-09 Score=102.56 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC-C-CCC----CCeeE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL-P-YPS----SSFEM 295 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L-p-f~d----~sFDl 295 (617)
++.+|||||||+|.++..+++.......++++|+++.+++.|+++ +. ++.+..+|+.+. + +++ ++||+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 345799999999999999998632223788889999999988875 43 577777775332 1 111 68999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|++... ..+...++.++.++|+|||.+++...
T Consensus 149 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 149 AVVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 997532 33567899999999999999999653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-08 Score=110.60 Aligned_cols=123 Identities=14% Similarity=0.191 Sum_probs=86.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCC-CCCCeeEEEec--
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPY-PSSSFEMVHCS-- 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf-~d~sFDlV~~s-- 299 (617)
++.+|||+|||+|..+..|++.-.....+.++|+++.+++.++++ |+ ++.+...|+..++. .+++||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 677899999999999999988622122678889999999988775 55 47777888877653 46789999972
Q ss_pred --c--ccc-------cccc--------chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcC
Q 039518 300 --R--CRV-------DWHA--------NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMC 355 (617)
Q Consensus 300 --~--~l~-------h~~~--------d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~g 355 (617)
. .+. +|.. ....+|.++.++|||||+|++++-..... ++. +.+..++++.+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~--Ene---~vv~~~l~~~~ 266 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE--ENE---AVCLWLKETYP 266 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST--TTH---HHHHHHHHHST
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc--cCH---HHHHHHHHHCC
Confidence 1 111 1110 02367999999999999999998644322 222 23566666654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.8e-09 Score=105.77 Aligned_cols=101 Identities=10% Similarity=0.025 Sum_probs=70.5
Q ss_pred CeEEEECCCC--cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCC-----CcEEEEecCCCCC----CC--CCCee-
Q 039518 230 FQVLDVGCGV--ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGI-----GAMISALSTKQLP----YP--SSSFE- 294 (617)
Q Consensus 230 ~rVLDIGCGt--G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~-----~~~~~~~d~~~Lp----f~--d~sFD- 294 (617)
.+|||||||+ +..+..++++ ... ..+.++|.|+.|++.|+++-. ++.+..+|+.+++ .+ .++||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~-arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~ 158 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPE-SRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL 158 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTT-CEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence 4699999997 3233444332 222 278889999999999988621 3778888887752 11 34455
Q ss_pred ----EEEecccccccccc--hHHHHHHHHHhccCCeEEEEEeC
Q 039518 295 ----MVHCSRCRVDWHAN--DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 295 ----lV~~s~~l~h~~~d--~~~~L~el~RvLrPGG~Liis~p 331 (617)
.|+++.++|+..+. +..++.++.+.|+|||+|+++..
T Consensus 159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 46666555554422 57899999999999999999864
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-09 Score=100.43 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=68.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCC-----------CCCeeE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYP-----------SSSFEM 295 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~-----------d~sFDl 295 (617)
.++.+|||+|||+|.++..+++++. .+.++|+++.. ...++.+..+|+.+.+.. .++||+
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~ 94 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDD 94 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceE
Confidence 4677899999999999999998843 56677877542 123578888898776521 148999
Q ss_pred EEecccc---cccccc-------hHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCR---VDWHAN-------DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l---~h~~~d-------~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+|.... .++..+ ...++.++.++|||||.|++..
T Consensus 95 Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 95 VVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9985321 111111 2467899999999999999865
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-08 Score=106.28 Aligned_cols=125 Identities=10% Similarity=0.039 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCCCCC----CCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQLPY----PSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~Lpf----~d~sFDlV 296 (617)
++.+|||+|||+|.++..+++.+.. .+.++|+++.+++.|+++ ++ ++.+..+|+.++.. ..++||+|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~--~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 4567999999999999999988632 688899999999988875 55 57888888655421 14689999
Q ss_pred Eecccc--------cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHH-HHHHHHHcCceE
Q 039518 297 HCSRCR--------VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDK-LVNLTTAMCWKL 358 (617)
Q Consensus 297 ~~s~~l--------~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~-le~La~~~gw~~ 358 (617)
++.--. .........++.++.++|+|||.++++..+.... ...|.. +.+.+...|++.
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~i~~~~~~~g~~~ 364 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT----SDLFQKIIADAAIDAGRDV 364 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC----HHHHHHHHHHHHHHHTCCE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC----HHHHHHHHHHHHHHcCCeE
Confidence 986322 1112356788999999999999999987543322 112333 555667777543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-08 Score=112.48 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=89.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCC-CCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLP-YPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lp-f~d~sFDlV~~s~ 300 (617)
.++.+|||+|||+|..+..|+++-.....+.++|+++.+++.++++ |+. +.+...|...++ ..+++||+|++.-
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 4677899999999999999987521112677889999999888765 553 666667766654 2457899999631
Q ss_pred c---ccccccc------------------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 301 C---RVDWHAN------------------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 301 ~---l~h~~~d------------------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
- .-.+..+ ...+|.++.++|||||.|++++-..... ++ -+.+..++++.+|+++
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e--En---e~vv~~~l~~~~~~l~ 258 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE--EN---EEIISWLVENYPVTIE 258 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG--GT---HHHHHHHHHHSSEEEE
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc--cC---HHHHHHHHHhCCCEEE
Confidence 1 0111111 1267999999999999999988644322 22 2347788888887665
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 259 ~ 259 (456)
T 3m4x_A 259 E 259 (456)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.3e-09 Score=110.42 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=65.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCC----cHHHHHHHH-H-hC-CCcEEEEe-cCCCCCCCCCCeeEEE
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDG----HENQIQFAL-E-RG-IGAMISAL-STKQLPYPSSSFEMVH 297 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDi----s~~~lq~A~-e-rg-~~~~~~~~-d~~~Lpf~d~sFDlV~ 297 (617)
+.++.+|||+|||+|.++..+++++ . |.++|+ ++.++..+. + .+ ..+.+..+ |+..+| .++||+|+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~~-~---V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~ 153 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGLK-N---VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLL 153 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST-T---EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhcC-C---EEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEE
Confidence 3567889999999999999999883 2 334454 222221111 1 11 23566666 666654 56899999
Q ss_pred eccccc--ccccchH---HHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRV--DWHANDG---ILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~--h~~~d~~---~~L~el~RvLrPGG~Liis~p 331 (617)
|..+.. ++..+.. .+|.++.++|||||.|++...
T Consensus 154 sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 154 CDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred ECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 965432 2221222 478999999999999998653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-08 Score=102.06 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCCCCCCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
.+.+|||||||+|.++..+++.+ ..++.+|+++.+++.|+++. .++.+..+|..... ++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 34689999999999999998873 48889999999999987652 24677777776554 78999997
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.. .++..+++++.++|+|||.+++...
T Consensus 146 d~------~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 146 LQ------EPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp SS------CCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CC------CChHHHHHHHHHhcCCCcEEEEEcC
Confidence 52 2556699999999999999999753
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=103.53 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------------CCcEEEEecCCC-CCCCCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------------IGAMISALSTKQ-LPYPSS 291 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------------~~~~~~~~d~~~-Lpf~d~ 291 (617)
.+.+|||||||+|.++..+++.+ ...++++|+++.+++.|+++. .++.+..+|+.. ++. ++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 34679999999999999999883 237888999999999998763 236677777533 222 57
Q ss_pred CeeEEEeccccccccc--c--hHHHHHHHHHhccCCeEEEEEe
Q 039518 292 SFEMVHCSRCRVDWHA--N--DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 292 sFDlV~~s~~l~h~~~--d--~~~~L~el~RvLrPGG~Liis~ 330 (617)
+||+|++... .++.. . ...+++++.++|+|||.+++..
T Consensus 152 ~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 152 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8999997642 23221 1 2678999999999999999975
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-08 Score=106.12 Aligned_cols=124 Identities=12% Similarity=-0.038 Sum_probs=86.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCC----CCCCeeEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPY----PSSSFEMVH 297 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf----~d~sFDlV~ 297 (617)
++.+|||+|||+|.++..+++.+.. .+.++|+++.+++.|+++ ++ ++.+..+|+.++.. ..++||+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~--~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 5667999999999999999987542 678889999999988775 44 57788888655421 256899999
Q ss_pred ecccccc--------cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHH-HHHHHHHcCce
Q 039518 298 CSRCRVD--------WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDK-LVNLTTAMCWK 357 (617)
Q Consensus 298 ~s~~l~h--------~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~-le~La~~~gw~ 357 (617)
+..-... ...+...++.++.++|+|||.+++++...... ...|.. +.+.+...+..
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~----~~~~~~~v~~~~~~~~~~ 359 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD----LQMFKDMIIAAGAKAGKF 359 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC----HHHHHHHHHHHHHHTTEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC----HHHHHHHHHHHHHHcCCe
Confidence 8532211 11345678999999999999999987543221 111322 44455555544
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-08 Score=100.82 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=73.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCe---eEEEec
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSF---EMVHCS 299 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sF---DlV~~s 299 (617)
+.+|||+|||+|.++..++.. . ...++++|+++.+++.|+++ +.. +.+..+|.... ++ ++| |+|+++
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~Ivsn 199 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSN 199 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEEC
T ss_pred CCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEc
Confidence 346999999999999999987 2 23788899999999999876 443 78888887552 22 578 999997
Q ss_pred cccc-----------ccc-------cchHHHHHHHH-HhccCCeEEEEEeC
Q 039518 300 RCRV-----------DWH-------ANDGILLKEVD-RVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~-----------h~~-------~d~~~~L~el~-RvLrPGG~Liis~p 331 (617)
--.+ |.+ .+...+++++. +.|+|||++++..+
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 2111 111 11236899999 99999999999754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-08 Score=113.82 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=80.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCC-CCCCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQ-LPYPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~-Lpf~d~sFDlV~~s 299 (617)
++.+|||+|||+|.++..++..+.. .++++|+|+.+++.|+++ ++ ++.+..+|+.+ ++...++||+|++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 4567999999999999999987753 578889999999999875 44 37788888654 34456789999985
Q ss_pred ccc----------cccccchHHHHHHHHHhccCCeEEEEEeCCC
Q 039518 300 RCR----------VDWHANDGILLKEVDRVLRPNGYFVYSAPPA 333 (617)
Q Consensus 300 ~~l----------~h~~~d~~~~L~el~RvLrPGG~Liis~p~~ 333 (617)
--. .....+...++.++.++|+|||+|+++....
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 321 1222345678999999999999999988643
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=104.49 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=88.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCc----EEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQ----TMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~----~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
++.+|||+|||+|.++..+++.... ...+.++|+++.+++.|+.+ +.++.+..+|+... .+.+.||+|+++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N 208 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 208 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEEC
Confidence 4567999999999999888765321 25789999999999998874 66788888886543 346789999998
Q ss_pred ccccccccc----------------h-HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCc
Q 039518 300 RCRVDWHAN----------------D-GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCW 356 (617)
Q Consensus 300 ~~l~h~~~d----------------~-~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw 356 (617)
-.+.++..+ . ..++..+.+.|+|||++++..|........ -..+.+.+.+.++
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~----~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD----FAKVDKFIKKNGH 278 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT----HHHHHHHHHHHEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCch----HHHHHHHHHhCCe
Confidence 654333211 1 257999999999999999998754322221 2446666666665
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-08 Score=101.06 Aligned_cols=98 Identities=9% Similarity=0.034 Sum_probs=74.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCC-C-C-----CCCCeeE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQL-P-Y-----PSSSFEM 295 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~L-p-f-----~d~sFDl 295 (617)
+.+|||||||+|..+..+++.-.....++++|+++.+++.|+++ +. .+.+..+|+.+. + + ++++||+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 34699999999999999987622123778889999999998865 54 367777776432 2 1 2578999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|++.. ...+...++.++.++|+|||++++..
T Consensus 151 I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 151 GFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99652 23456789999999999999999865
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-08 Score=104.14 Aligned_cols=123 Identities=12% Similarity=0.042 Sum_probs=86.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCC----CCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPY----PSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf----~d~sFDlV~~ 298 (617)
++.+|||+|||+|.++..+++. +..+.++|+++.+++.|+++ +.. +.+..+|+..+.. .+++||+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 4567999999999999999886 45788999999999998875 443 7788888655421 2568999998
Q ss_pred cccccc--------cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHH-HHHHHHHHcCce
Q 039518 299 SRCRVD--------WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWD-KLVNLTTAMCWK 357 (617)
Q Consensus 299 s~~l~h--------~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~-~le~La~~~gw~ 357 (617)
.--... ...+...++.++.++|+|||.++++....... ...|. .+.+.+...|..
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~i~~~~~~~g~~ 349 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT----EPLFYAMVAEAAQDAHRL 349 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC----HHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC----HHHHHHHHHHHHHHcCCe
Confidence 532211 11334678999999999999999988643321 11132 345566666643
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-08 Score=102.02 Aligned_cols=118 Identities=12% Similarity=0.032 Sum_probs=78.8
Q ss_pred CcccCCCCeEEEECCCC------cHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEE-EEecCCCCCCCCCCeeE
Q 039518 223 NLRSAGVFQVLDVGCGV------ASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMI-SALSTKQLPYPSSSFEM 295 (617)
Q Consensus 223 ~lr~~~g~rVLDIGCGt------G~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~-~~~d~~~Lpf~d~sFDl 295 (617)
.+.+.++.+|||+|||+ |. ..++++-.....++++|+++. + .++.+ ..+|+..++++ ++||+
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~~v~~~i~gD~~~~~~~-~~fD~ 126 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------SDADSTLIGDCATVHTA-NKWDL 126 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------CSSSEEEESCGGGCCCS-SCEEE
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------CCCEEEEECccccCCcc-CcccE
Confidence 34567788999999944 76 333332111125777888876 1 24677 88999888765 67999
Q ss_pred EEecccccccc-----------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 296 VHCSRCRVDWH-----------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 296 V~~s~~l~h~~-----------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
|+|+.. .++. .....+++++.|+|||||.|++...... . .+++.++++..||..+.
T Consensus 127 Vvsn~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~----~----~~~l~~~l~~~GF~~v~ 193 (290)
T 2xyq_A 127 IISDMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----W----NADLYKLMGHFSWWTAF 193 (290)
T ss_dssp EEECCC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----C----CHHHHHHHTTEEEEEEE
T ss_pred EEEcCC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC----C----HHHHHHHHHHcCCcEEE
Confidence 998632 2211 1134789999999999999999764221 1 23577778888887654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-07 Score=96.83 Aligned_cols=130 Identities=10% Similarity=0.047 Sum_probs=89.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
..+|||||||+|.++..++.....+ .+.++|+++.++++++++ |++..+.+.|...-+ +.+.||+|+++-++++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a-~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAET-VYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPC 210 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTC-EEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence 4579999999999999998875443 788999999999998876 777778887764444 5678999998877766
Q ss_pred cccchHHHHHHHHHhccCCeEEEEEeC-CCCCCCCCChhhHH-HHHHHHHHcCceEEE
Q 039518 305 WHANDGILLKEVDRVLRPNGYFVYSAP-PAYRKDKDYPLIWD-KLVNLTTAMCWKLIA 360 (617)
Q Consensus 305 ~~~d~~~~L~el~RvLrPGG~Liis~p-~~~~~~~~~~~~W~-~le~La~~~gw~~v~ 360 (617)
........+.++.+.|+|+|.++-... ......+.....+. .+++.+...||..-.
T Consensus 211 Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 211 LETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceee
Confidence 653323233399999999998775432 11222222222222 278888888985443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.9e-08 Score=99.20 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=70.0
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..++++ +||+|+++.
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nl 101 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANL 101 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEEC
T ss_pred CCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEec
Confidence 3566799999999999999998865 6778899999999998762 2578888998887765 799999864
Q ss_pred cccccccchH-HHH--------------HHH--HHhccCCeEEE
Q 039518 301 CRVDWHANDG-ILL--------------KEV--DRVLRPNGYFV 327 (617)
Q Consensus 301 ~l~h~~~d~~-~~L--------------~el--~RvLrPGG~Li 327 (617)
..++..+.. .++ +|+ .++|+|||.++
T Consensus 102 -py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 102 -PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp -CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred -CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 333332111 122 333 36899999864
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.2e-08 Score=96.73 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=74.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.+..+|||||||+|.++..++ . ...+.+.|+++.++++++++ +.+..+.+.|....+.+. +||+|++.-++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~---~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-G---IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-T---CSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc-c---CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHH
Confidence 356689999999999999887 2 22678889999999999876 677788888887777554 89999988766
Q ss_pred cccccchHHHHHHHHHhccCCeEEEE
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Lii 328 (617)
++........+.++.+.|+++|.++-
T Consensus 179 h~LE~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 179 PLLEREQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp HHHHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred HHhhhhchhhHHHHHHHhcCCCEEEE
Confidence 66542223344488889999976654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-07 Score=97.32 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++.+|||+|||+|.++.. ++ + +..+.++|+++.+++.|+++ ++ ++.+..+|+..+. ++||+|++...
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~--~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-N--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-T--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred CCCEEEEccCccCHHHHh-cc-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 456799999999999999 77 3 23688889999999988875 44 4788888887765 78999997521
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.....++.++.++|+|||.+++...
T Consensus 268 -----~~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 268 -----KFAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp -----TTGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----HhHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1233789999999999999998753
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-07 Score=96.88 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=53.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++++. .+.++|+++.+++.|+++ + .++.+..+|+..++++ +||+|+++.
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~ 114 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANI 114 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEEC
T ss_pred CCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcC
Confidence 3556799999999999999998854 678889999999998875 3 2577888888877754 799999864
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=94.00 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=82.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC----CCCCCCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ----LPYPSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~----Lpf~d~sFDlV~ 297 (617)
.++.+|||+|||+|.++..|++.+. .+.++|+++.+++.|+++ +. ++.+..+|+.+ +++++++||+|+
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 3456799999999999999998743 678889999999998865 44 57888888766 445677899999
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
+.--... ...++..+. .++|++.++++..+ ....+-...+...||++..
T Consensus 362 ~dPPr~g----~~~~~~~l~-~~~p~~ivyvsc~p---------~tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 362 LDPARAG----AAGVMQQII-KLEPIRIVYVSCNP---------ATLARDSEALLKAGYTIAR 410 (433)
T ss_dssp ECCCTTC----CHHHHHHHH-HHCCSEEEEEESCH---------HHHHHHHHHHHHTTCEEEE
T ss_pred ECCCCcc----HHHHHHHHH-hcCCCeEEEEECCh---------HHHHhhHHHHHHCCcEEEE
Confidence 7632211 224555554 37899999997631 1122323344556888765
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.1e-07 Score=96.15 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=72.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.++.+|||+|||+|.++..|++.+. .+.++|+++.+++.|+++ ++.+.+..+|+.++.. + +||+|++....
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr 363 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPR 363 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCT
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCc
Confidence 3556799999999999999998754 678889999999988765 5557888888877642 2 89999975422
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.. ....++..+ +.|+|||.++++..
T Consensus 364 ~g---~~~~~~~~l-~~l~p~givyvsc~ 388 (425)
T 2jjq_A 364 AG---LHPRLVKRL-NREKPGVIVYVSCN 388 (425)
T ss_dssp TC---SCHHHHHHH-HHHCCSEEEEEESC
T ss_pred cc---hHHHHHHHH-HhcCCCcEEEEECC
Confidence 11 123455555 45999999999863
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-07 Score=101.74 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=83.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccc----
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVD---- 304 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h---- 304 (617)
+.+|||+|||+|.++..++++......+.++|+++.+++.| ..+.+..+|+...+ +++.||+|+++--...
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCT
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccc
Confidence 45799999999999999987521113688889999988777 35778888876654 3568999999622211
Q ss_pred ------cccc------------------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 305 ------WHAN------------------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 305 ------~~~d------------------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
..++ ...++..+.++|+|||.+++..|....... . .+.+.+.+.+.++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~-~---~~~lr~~l~~~~~~ 187 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE-D---FALLREFLAREGKT 187 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCG-G---GHHHHHHHHHHSEE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCc-c---HHHHHHHHHhcCCe
Confidence 1111 125688999999999999999875322211 1 34577777777773
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=4.8e-07 Score=90.72 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=56.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCC-CCeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPS-SSFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d-~sFDlV~~s 299 (617)
.++.+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+.++++++ ..|+ |+++
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-vv~n 101 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK-IFGN 101 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE-EEEE
T ss_pred CCCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE-EEEe
Confidence 4567899999999999999998873 6788899999999998874 35788899999988874 4564 5544
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-08 Score=101.98 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCC-CCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPS-SSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d-~sFDlV~~s~~l 302 (617)
.++.+|||+|||+|.++..|++++. .++++|+++.+++.|+++. .++.+..+|+.++++++ ++| .|+++...
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py 103 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPY 103 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCS
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCc
Confidence 3566799999999999999998863 6888999999988887653 35778888998888774 689 66665211
Q ss_pred -----------cccccchHHHH----HHHHHhccCCeEEEEEe
Q 039518 303 -----------VDWHANDGILL----KEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 -----------~h~~~d~~~~L----~el~RvLrPGG~Liis~ 330 (617)
.|+ .+....+ +.+.|+|+|||.+.+..
T Consensus 104 ~~~~~~~~~~~~~~-~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 104 HLSTQIIKKVVFES-RASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSCHHHHHHHHHHC-CCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cccHHHHHHHHhCC-CCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 111 1222334 66889999999887754
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-05 Score=86.48 Aligned_cols=281 Identities=12% Similarity=0.162 Sum_probs=142.5
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc--
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA-- 307 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~-- 307 (617)
.+||.++-+.|..+..+... ..+..+ .-+....+..+.+|..... . .....+...||+|+. .++.
T Consensus 47 ~~~l~~n~~~g~~~~~~~~~-~~~~~~---~~~~~~~~~l~~~~~~~~~--~--~~~~~~~~~~d~v~~-----~~Pk~k 113 (381)
T 3dmg_A 47 ERALDLNPGVGWGSLPLEGR-MAVERL---ETSRAAFRCLTASGLQARL--A--LPWEAAAGAYDLVVL-----ALPAGR 113 (381)
T ss_dssp SEEEESSCTTSTTTGGGBTT-BEEEEE---ECBHHHHHHHHHTTCCCEE--C--CGGGSCTTCEEEEEE-----ECCGGG
T ss_pred CcEEEecCCCCccccccCCC-CceEEE---eCcHHHHHHHHHcCCCccc--c--CCccCCcCCCCEEEE-----ECCcch
Confidence 36999999999877777633 222222 2244443445556776532 1 112224567999973 2332
Q ss_pred ---chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHH-HcCceEEEEeeeeEEEeeccchhhhhhcccC
Q 039518 308 ---NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTT-AMCWKLIARKIQTAIWIKEENQSCLLHNADL 383 (617)
Q Consensus 308 ---d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~-~~gw~~v~~~~~~~IwqKp~~~~C~~~r~~~ 383 (617)
.....|.++.+.|+|||.+++.+... .+ .+.+...++ ..++......+. ...|.......
T Consensus 114 ~~~~~~~~l~~~~~~l~~g~~i~~~g~~~------~g--~~~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~ 177 (381)
T 3dmg_A 114 GTAYVQASLVAAARALRMGGRLYLAGDKN------KG--FERYFKEARALLGYGVVVRREG--------PYRVALLEKEK 177 (381)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEGG------GT--HHHHHHHHHHHHSCEEEEEEET--------TEEEEEEECCS
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEEEccH------HH--HHHHHHHHHhhhcccccccccc--------CcEEEEEEccC
Confidence 23568999999999999999987421 12 344444443 456654443211 11222111100
Q ss_pred ccCCccccCCCCCCcccccccccccccccccCCCCCCCCCCccccCCcccccccc-CccccccchhhHHHHHHHHHHhcc
Q 039518 384 KLIDVCDAVDEFKPSWNTPLGNCVQISSAQTNSQKLPPRPERLSVYSESLSRIGI-TQEEFTTDTSFWQDQVRHYWQLMN 462 (617)
Q Consensus 384 ~~p~lC~~~~d~~~~WY~~L~~c~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~-~~~~f~~d~~~w~~~v~~y~~~~~ 462 (617)
...+....| ...+..+. +.. -++.. .+|+ +.......++...+.+..+..
T Consensus 178 -------~~p~~~~~w-~~~~~~~~-------g~~-----~~~~~------~pgvFs~~~~d~~t~~ll~~l~~~l~--- 228 (381)
T 3dmg_A 178 -------EAPPLPSLW-RAFSARIL-------GAE-----YTFHH------LPGVFSAGKVDPASLLLLEALQERLG--- 228 (381)
T ss_dssp -------CCCCCCCCC-EEEEEEET-------TEE-----EEEEE------CTTCTTTTSCCHHHHHHHHHHHHHHC---
T ss_pred -------CCCCCcccc-ceeeEEec-------Cce-----EEEEe------CCCceeCCCCCHHHHHHHHHHHHhhc---
Confidence 001111223 22111110 000 01111 1121 222223344555554444331
Q ss_pred CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc-cccc-cccCCCCCCCCCccchhhc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI-LGAF-HDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl-ig~~-~~~~~~f~typrtyDl~H~ 535 (617)
.....-.+|||+|||.|.++.+|..... .|.-.|.. ..+..+-+ .|+ +-++ .|..+. ..=..+||+|-+
T Consensus 229 ~~~~~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~-~~~~~~fD~Ii~ 304 (381)
T 3dmg_A 229 PEGVRGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA-LTEEARFDIIVT 304 (381)
T ss_dssp TTTTTTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT-SCTTCCEEEEEE
T ss_pred ccCCCCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhc-cccCCCeEEEEE
Confidence 0111225899999999999999977654 33334443 44433332 232 2222 222222 111279999999
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
+..|..- .....-....++-++-|+|+|||.+++.-+
T Consensus 305 npp~~~~-~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 305 NPPFHVG-GAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CCCCCTT-CSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCchhhc-ccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 8777631 001112235788999999999999999743
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.2e-07 Score=85.44 Aligned_cols=117 Identities=13% Similarity=0.222 Sum_probs=75.3
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc--cc-cccccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI--LG-AFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl--ig-~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
.+|||+|||.|.++..|..... +|+-.|.. ..+..+-+ .|+ +- +..|..+ ++. +.+||+|.+..++.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN-LTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG-CCC-CCCEEEEEEESCGG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh-CCC-CCCceEEEEcchhh
Confidence 4899999999999999977654 33333333 33444333 333 11 2223322 333 78999999998887
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEecC--------------hHHHHHHHhhhhcCCceEEEeec
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE--------------KSLITRIRDLAPKFLWDVELHSL 596 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~--------------~~~~~~~~~~~~~~~W~~~~~~~ 596 (617)
+. ..=....+|-++-|+|+|||.+++-+. .-..++++++... |++.....
T Consensus 109 ~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~ 172 (199)
T 2xvm_A 109 FL----EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNE 172 (199)
T ss_dssp GS----CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred hC----CHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecc
Confidence 54 222456899999999999999877421 0123566777776 88766543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=83.76 Aligned_cols=134 Identities=12% Similarity=0.119 Sum_probs=89.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCC---CCCC-Cccchhhccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPF---STYP-RTYDLLHANHLFSHYK 543 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f---~typ-rtyDl~H~~~~~s~~~ 543 (617)
.+|||+|||.|.++.+|.....- |+-.|-. ..+..+-+++.+...+.-.+.+ +..+ .+||+|.+..++. .
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~- 128 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H- 128 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S-
T ss_pred CEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h-
Confidence 78999999999999999887653 3344444 6777777776433322111111 2223 5699999887776 2
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEecCh--------------------------------HHHHHHHhhhhcCCceE
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK--------------------------------SLITRIRDLAPKFLWDV 591 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~--------------------------------~~~~~~~~~~~~~~W~~ 591 (617)
-....+|-|+-|+|+|||++++.+.. ...++++++++.--+++
T Consensus 129 -----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 203 (227)
T 3e8s_A 129 -----QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRL 203 (227)
T ss_dssp -----SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEE
T ss_pred -----hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeE
Confidence 34568999999999999999997420 14578888888888887
Q ss_pred EEeeccccCC---CceeEEEEEec
Q 039518 592 ELHSLENREK---KMESVLICRKK 612 (617)
Q Consensus 592 ~~~~~e~~~~---~~~~~l~~~k~ 612 (617)
........+. ...-+++++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 204 VSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEEECCCCTTCSSCSCEEEEEEEC
T ss_pred EEEecCCCCCCCCceeEEEEeecC
Confidence 6554321111 12456777764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.9e-07 Score=88.40 Aligned_cols=113 Identities=12% Similarity=0.187 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHhcc--CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc--ccccccccCCCC
Q 039518 449 FWQDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEPF 523 (617)
Q Consensus 449 ~w~~~v~~y~~~~~--~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~f 523 (617)
.|...+....+.+. +.. -.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++- +--+..|..+ +
T Consensus 32 ~~~~~~~~~~~~l~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~-~ 105 (263)
T 3pfg_A 32 DYHREAADLAALVRRHSPK--AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRD-F 105 (263)
T ss_dssp CHHHHHHHHHHHHHHHCTT--CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-C
T ss_pred CHHHHHHHHHHHHHhhCCC--CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHH-C
Confidence 34444444444333 333 36899999999999999988753 34444554 6666666652 2212223322 3
Q ss_pred CCCCCccchhhccc-cccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 524 STYPRTYDLLHANH-LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 524 ~typrtyDl~H~~~-~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+. +.+||+|.+.. +|.+. .+.-....+|-++-|+|+|||.+++.
T Consensus 106 ~~-~~~fD~v~~~~~~l~~~---~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 106 SL-GRRFSAVTCMFSSIGHL---AGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CC-SCCEEEEEECTTGGGGS---CHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred Cc-cCCcCEEEEcCchhhhc---CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 33 78999999887 77754 22234557899999999999999995
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.24 E-value=9e-07 Score=96.40 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=82.7
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCC------------CcEEEeeecCCcHHHHHHHHHh---
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLD------------IQTMSFAPKDGHENQIQFALER--- 272 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~g------------v~~v~v~~iDis~~~lq~A~er--- 272 (617)
...+.+.+++.. .++.+|||.|||+|.++..+++.- .....+.++|+++.+++.|+.+
T Consensus 158 ~v~~~mv~~l~~-------~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l 230 (445)
T 2okc_A 158 PLIQAMVDCINP-------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 230 (445)
T ss_dssp HHHHHHHHHHCC-------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-------CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH
Confidence 344555555522 345579999999999998876531 0123578899999999988764
Q ss_pred -CC---CcEEEEecCCCCCCCCCCeeEEEeccccccccc-c---------------hHHHHHHHHHhccCCeEEEEEeCC
Q 039518 273 -GI---GAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA-N---------------DGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 273 -g~---~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~-d---------------~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
|. ...+..+|+...+.. ..||+|+++-.+.+... + ...++..+.++|+|||+++++.|.
T Consensus 231 ~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 231 HGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp TTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred hCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 55 567888887666543 48999999854433211 1 136899999999999999998873
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.4e-06 Score=80.00 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=95.1
Q ss_pred ccccccchhhHHHHHHHHHH------------hcc-C-CCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCCchhH
Q 039518 440 QEEFTTDTSFWQDQVRHYWQ------------LMN-V-NETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLS 505 (617)
Q Consensus 440 ~~~f~~d~~~w~~~v~~y~~------------~~~-~-~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~~~l~ 505 (617)
.+.|..+.+.|......|.. ++. + ....-.+|||+|||.|.++..|. ..|..+-+.|. .+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~----~~~ 100 (215)
T 2zfu_A 26 QRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR-NPVHCFDLASL----DPR 100 (215)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS----STT
T ss_pred HHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC----Cce
Confidence 34567777777766555543 121 1 11223579999999999998884 45555554444 110
Q ss_pred HHHhhcccccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChH---HHHHHHh
Q 039518 506 AIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKS---LITRIRD 582 (617)
Q Consensus 506 ~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~---~~~~~~~ 582 (617)
+ +..|.. .++.-+.+||+|.+..++. + -....+|-|+-|+|+|||.+++.+... ..+++.+
T Consensus 101 --~------~~~d~~-~~~~~~~~fD~v~~~~~l~-~------~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~ 164 (215)
T 2zfu_A 101 --V------TVCDMA-QVPLEDESVDVAVFCLSLM-G------TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLR 164 (215)
T ss_dssp --E------EESCTT-SCSCCTTCEEEEEEESCCC-S------SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHH
T ss_pred --E------EEeccc-cCCCCCCCEeEEEEehhcc-c------cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHH
Confidence 0 111211 1222247999999887773 2 245789999999999999999986543 4567788
Q ss_pred hhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 583 LAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 583 ~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
+++..-++....+...+ .-.+++++|.
T Consensus 165 ~l~~~Gf~~~~~~~~~~---~~~~~~~~k~ 191 (215)
T 2zfu_A 165 AVTKLGFKIVSKDLTNS---HFFLFDFQKT 191 (215)
T ss_dssp HHHHTTEEEEEEECCST---TCEEEEEEEC
T ss_pred HHHHCCCEEEEEecCCC---eEEEEEEEec
Confidence 88888888766543322 2467888875
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=8.6e-07 Score=91.90 Aligned_cols=83 Identities=11% Similarity=0.011 Sum_probs=66.0
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTK 284 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~ 284 (617)
...+.+.+.+. +.++.+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+.
T Consensus 37 ~i~~~Iv~~l~-------~~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l 106 (295)
T 3gru_A 37 NFVNKAVESAN-------LTKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKELYNNIEIIWGDAL 106 (295)
T ss_dssp HHHHHHHHHTT-------CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTT
T ss_pred HHHHHHHHhcC-------CCCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhccCCCeEEEECchh
Confidence 44555555542 23566799999999999999998754 6778899999999988762 56889999999
Q ss_pred CCCCCCCCeeEEEecc
Q 039518 285 QLPYPSSSFEMVHCSR 300 (617)
Q Consensus 285 ~Lpf~d~sFDlV~~s~ 300 (617)
++++++.+||.|+++.
T Consensus 107 ~~~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 107 KVDLNKLDFNKVVANL 122 (295)
T ss_dssp TSCGGGSCCSEEEEEC
T ss_pred hCCcccCCccEEEEeC
Confidence 9998888899999774
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-06 Score=82.65 Aligned_cols=160 Identities=12% Similarity=0.091 Sum_probs=94.6
Q ss_pred cccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCC--eEEEEeccCCCC-chhHHHHhh---------
Q 039518 443 FTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLP--VWVMNIVPISMK-NTLSAIYNR--------- 510 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~--v~vmnv~p~~~~-~~l~~~~~R--------- 510 (617)
|+.-......+++...+.+....+ .+|||+|||.|.++.+|.+.. .-| +-.|-. ..+..+-++
T Consensus 7 ~~~~~~~~~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~ 81 (219)
T 3jwg_A 7 TEKKLNLNQQRLGTVVAVLKSVNA--KKVIDLGCGEGNLLSLLLKDKSFEQI---TGVDVSYSVLERAKDRLKIDRLPEM 81 (219)
T ss_dssp -----CHHHHHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHTSTTCCEE---EEEESCHHHHHHHHHHHTGGGSCHH
T ss_pred CCcCCcchHHHHHHHHHHHhhcCC--CEEEEecCCCCHHHHHHHhcCCCCEE---EEEECCHHHHHHHHHHHHhhccccc
Confidence 333344555566555555543333 589999999999999997643 222 223333 455555443
Q ss_pred ---cccccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChH------------
Q 039518 511 ---GILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKS------------ 575 (617)
Q Consensus 511 ---Glig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~------------ 575 (617)
.+-=+..|. +..+.-+.+||+|-+..++.+. ..-.+..+|-|+-|+|+|||.+|.....+
T Consensus 82 ~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~l~~~----~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~ 156 (219)
T 3jwg_A 82 QRKRISLFQSSL-VYRDKRFSGYDAATVIEVIEHL----DENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGN 156 (219)
T ss_dssp HHTTEEEEECCS-SSCCGGGTTCSEEEEESCGGGC----CHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT----
T ss_pred cCcceEEEeCcc-cccccccCCCCEEEEHHHHHhC----CHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCccc
Confidence 221122233 2222223799999999988864 11124578999999999999887753221
Q ss_pred ----------HHHHHH----hhhhcCCceEEEeecc---ccCCCceeEEEEEec
Q 039518 576 ----------LITRIR----DLAPKFLWDVELHSLE---NREKKMESVLICRKK 612 (617)
Q Consensus 576 ----------~~~~~~----~~~~~~~W~~~~~~~e---~~~~~~~~~l~~~k~ 612 (617)
..++++ +++..--+++...... +.-....+|.|++|+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 157 LRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp -GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred ccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEecc
Confidence 122333 7777777887776322 223345789999986
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.18 E-value=4e-06 Score=87.35 Aligned_cols=106 Identities=9% Similarity=-0.056 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCC---CCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPS---SSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d---~sFDlV~~ 298 (617)
.++.+|||+|||+|..+..|++.-.....+.++|+++.+++.++++ |+ ++.+..+|+..++... ++||.|++
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 4677899999999999999987511112678889999999888765 54 5778888887765432 57999996
Q ss_pred c----c-ccc-c-----c----c-cch-------HHHHHHHHHhccCCeEEEEEeCCC
Q 039518 299 S----R-CRV-D-----W----H-AND-------GILLKEVDRVLRPNGYFVYSAPPA 333 (617)
Q Consensus 299 s----~-~l~-h-----~----~-~d~-------~~~L~el~RvLrPGG~Liis~p~~ 333 (617)
. . ... . | . ++. ..+|..+.++|+ ||+++.++-..
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 2 1 111 0 1 1 111 236778888887 99999987543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-06 Score=82.23 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=90.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc--ccccccccCCCCCCCCCccchhhccccccccccC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNR 545 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~ 545 (617)
.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++. +--+..|.. .++.-+.+||+|.+.+++.++
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~--- 115 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTIT-DLSDSPKRWAGLLAWYSLIHM--- 115 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGG-GGGGSCCCEEEEEEESSSTTC---
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCccc-ccccCCCCeEEEEehhhHhcC---
Confidence 5799999999999999987654 23333444 5666666663 211222222 223223899999999888764
Q ss_pred CCCCChhhHHhhhhhcccCCceEEEecCh----------------HHHHHHHhhhhcCCceEEEeeccccCCCceeEEEE
Q 039518 546 GEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------------SLITRIRDLAPKFLWDVELHSLENREKKMESVLIC 609 (617)
Q Consensus 546 ~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~ 609 (617)
..-....+|-|+-|+|+|||.+++.+.. -..++++++++..-|++.......+ .+...++.
T Consensus 116 -~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~ 192 (203)
T 3h2b_A 116 -GPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTA 192 (203)
T ss_dssp -CTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEE
T ss_pred -CHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhh
Confidence 2335678999999999999999997421 2367888899999999877765544 44455544
Q ss_pred Ee
Q 039518 610 RK 611 (617)
Q Consensus 610 ~k 611 (617)
.|
T Consensus 193 ~~ 194 (203)
T 3h2b_A 193 EA 194 (203)
T ss_dssp EE
T ss_pred hh
Confidence 44
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-06 Score=88.29 Aligned_cols=107 Identities=10% Similarity=0.166 Sum_probs=70.4
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhcc-CCCeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCCCcc
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALN-SLPVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYPRTY 530 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~-~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typrty 530 (617)
..+.+++..+ .+|||+|||.|+++.+|. ..+. +|+-.|-. ..+..+-++ |+..-..-.+..+..+|.+|
T Consensus 56 ~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 56 ALGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHcCCCCc--CEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 3344445554 589999999999998886 3343 33333443 566666554 43221111122223345899
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|+|.+.++|.+. ..-....+|-|+-|+|+|||.+++.+
T Consensus 131 D~v~~~~~l~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 131 DRIVSIGAFEHF----GHERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp SEEEEESCGGGT----CTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred eEEEEeCchhhc----ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999998865 22346789999999999999999964
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-06 Score=90.81 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=76.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCc-------------------------------------EEEeeecCCcHHHHHHH
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQ-------------------------------------TMSFAPKDGHENQIQFA 269 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~-------------------------------------~v~v~~iDis~~~lq~A 269 (617)
.++.+|||++||+|.++..++..+.. ...+.++|+++.+++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 34567999999999999888654211 13688999999999999
Q ss_pred HHh----CC--CcEEEEecCCCCCCCCCCeeEEEecccccccc---cchHHHHHHHHHhccC--CeEEEEEeC
Q 039518 270 LER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCRVDWH---ANDGILLKEVDRVLRP--NGYFVYSAP 331 (617)
Q Consensus 270 ~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~---~d~~~~L~el~RvLrP--GG~Liis~p 331 (617)
+++ |+ .+.+...|+.+++.+ .+||+|+++--...-. ++...+..++.++|++ ||.+++.++
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 875 55 478889999888764 5899999975332211 2344567777777877 888888765
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.2e-06 Score=89.98 Aligned_cols=103 Identities=12% Similarity=0.074 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCc-------------------------------------EEEeeecCCcHHHHHHHH
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQ-------------------------------------TMSFAPKDGHENQIQFAL 270 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~-------------------------------------~v~v~~iDis~~~lq~A~ 270 (617)
++..|||.+||+|.++..++..+.. ...+.++|+++.+++.|+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 4566999999999998777654221 125889999999999998
Q ss_pred Hh----CC--CcEEEEecCCCCCCCCCCeeEEEecccccccc---cchHHHHHHHHHhccC--CeEEEEEeC
Q 039518 271 ER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCRVDWH---ANDGILLKEVDRVLRP--NGYFVYSAP 331 (617)
Q Consensus 271 er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~---~d~~~~L~el~RvLrP--GG~Liis~p 331 (617)
++ |+ .+.+..+|+.+++.+ .+||+|+++--...-. .+...+..++.+.||+ ||.+++.++
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 75 54 378899999888765 4899999984322111 2234456666677766 888888775
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.5e-06 Score=76.31 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=84.7
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc--ccccccccCCCCCCCCCccchhhccccccccccC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNR 545 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~ 545 (617)
.+|||+|||.|.++.+|.+..- +|.-.|-. ..+..+-++. +--+..| .+++ +.+||+|.+..++.+.
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~--~~~~D~v~~~~~l~~~--- 88 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEKFDSVITLSDP--KEIP--DNSVDFILFANSFHDM--- 88 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSC--TTCEEEEEEESCSTTC---
T ss_pred CeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCC--CCceEEEEEccchhcc---
Confidence 7899999999999999987752 55555655 6666776661 2222233 3333 3799999999988865
Q ss_pred CCCCChhhHHhhhhhcccCCceEEEecCh-------------HHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 546 GEVCSLEDIMLEMDLIIRPQGFIIIRDEK-------------SLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 546 ~~~c~~~~~l~e~dRilRP~G~~i~~d~~-------------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
. ....+|-|+-|+|+|||.+++.+-. -..++++++++ .|+......- ....-.+++.|+
T Consensus 89 ~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~---~~~~~~l~~~~~ 160 (170)
T 3i9f_A 89 D---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP---TPYHFGLVLKRK 160 (170)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS---STTEEEEEEEEC
T ss_pred c---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC---CCceEEEEEecC
Confidence 2 4678999999999999999997321 12456666666 6665444321 123456666654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.08 E-value=8.7e-06 Score=79.40 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc-ccc-cccc
Q 039518 447 TSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-LGA-FHDW 519 (617)
Q Consensus 447 ~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-ig~-~~~~ 519 (617)
.+.|.+.+..+..... ..-.+|||+|||.|.++..|..... +++-.|.. ..+..+-++ |+ +-+ ..|.
T Consensus 20 ~~~~~~~~~~~l~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~ 93 (246)
T 1y8c_A 20 YKKWSDFIIEKCVENN---LVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHHHTTT---CCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG
T ss_pred HHHHHHHHHHHHHHhC---CCCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 3445555555444221 1235899999999999999987754 23333443 445444443 22 111 1222
Q ss_pred CCCCCCCCCccchhhccc-cccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 520 CEPFSTYPRTYDLLHANH-LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 520 ~~~f~typrtyDl~H~~~-~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. .++ +|.+||+|.+.. +|.+. .+.=....+|-++-|+|+|||.+++.
T Consensus 94 ~-~~~-~~~~fD~v~~~~~~l~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 94 S-NLN-INRKFDLITCCLDSTNYI---IDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp G-GCC-CSCCEEEEEECTTGGGGC---CSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred c-cCC-ccCCceEEEEcCcccccc---CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 222 358999999987 88754 22234568899999999999999983
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.4e-06 Score=79.30 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=64.7
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----ccc---c-cccccCCCCCCCCCccchhhcccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GIL---G-AFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gli---g-~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
+|||+|||.|.++..|...+- .+|+-.|-. ..+..+-++ |+- - +..|..+ ++.-+.+||+|.+..++.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~l~ 122 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN-IPIEDNYADLIVSRGSVF 122 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB-CSSCTTCEEEEEEESCGG
T ss_pred EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH-CCCCcccccEEEECchHh
Confidence 899999999999999987632 233334443 555555555 432 2 2223322 332238999999998887
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
++ -....+|-|+-|+|+|||.+++.+
T Consensus 123 ~~------~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 123 FW------EDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GC------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hc------cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 64 235689999999999999999974
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.1e-06 Score=89.33 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC---cEEEEecCCCC-C-CCCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG---AMISALSTKQL-P-YPSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~---~~~~~~d~~~L-p-f~d~sFDlV~~ 298 (617)
++.+|||++||+|.++..++++...+..++++|+++.+++.++++ ++. +.+..+|+.++ . ...+.||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 456799999999999999988522234788899999999988875 543 66777775332 1 12457999996
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.- . ..+..++..+.++|+|||.++++.
T Consensus 132 DP----~-g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----F-GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----C-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 53 2 234568999999999999998876
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.2e-06 Score=86.79 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=87.9
Q ss_pred CCCCCeeeEEeccccccchhhhcc--CCCeEEEEeccCCCC-chhHHHHhh----ccc---cc-ccccCCCCCCCCCccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALN--SLPVWVMNIVPISMK-NTLSAIYNR----GIL---GA-FHDWCEPFSTYPRTYD 531 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~--~~~v~vmnv~p~~~~-~~l~~~~~R----Gli---g~-~~~~~~~f~typrtyD 531 (617)
+..+ .+|||+|||.|.++.+|. ..+-. +|+-.|-. ..+..+-++ |+- -+ ..|..+ ++ +|.+||
T Consensus 116 l~~~--~~vLDiGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD 189 (305)
T 3ocj_A 116 LRPG--CVVASVPCGWMSELLALDYSACPGV--QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-LD-TREGYD 189 (305)
T ss_dssp CCTT--CEEEETTCTTCHHHHTSCCTTCTTC--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-CC-CCSCEE
T ss_pred CCCC--CEEEEecCCCCHHHHHHHHhcCCCC--eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-CC-ccCCeE
Confidence 4444 579999999999999983 33211 22223333 444444433 332 11 223322 22 358999
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-------------------------------------
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK------------------------------------- 574 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~------------------------------------- 574 (617)
+|.+.+++.+. .+.-....+|-|+-|+|||||.+++.+..
T Consensus 190 ~v~~~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (305)
T 3ocj_A 190 LLTSNGLNIYE---PDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWN 266 (305)
T ss_dssp EEECCSSGGGC---CCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCC
T ss_pred EEEECChhhhc---CCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhh
Confidence 99998887754 33322334799999999999999998611
Q ss_pred --HHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 575 --SLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 575 --~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
...++++++++.--++...... .....-.+++++|+
T Consensus 267 ~~~~~~~~~~~l~~aGF~~v~~~~--~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 267 ALRTHAQTRAQLEEAGFTDLRFED--DRARLFPTVIARKP 304 (305)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEEC--CTTSSSCEEEEECC
T ss_pred ccCCHHHHHHHHHHCCCEEEEEEc--ccCceeeEEEEecC
Confidence 1367788888888888765543 22334567888886
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3e-06 Score=79.88 Aligned_cols=144 Identities=12% Similarity=0.037 Sum_probs=81.4
Q ss_pred CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc--cccccccCCCCCCC-CCccchhh
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI--LGAFHDWCEPFSTY-PRTYDLLH 534 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~~~~f~ty-prtyDl~H 534 (617)
+..+ ..|||+|||.|.++..|.+...-|.- .|-. ..+..+-+ .|+ +-+.++-.+.+..+ +.+||+|.
T Consensus 20 ~~~~--~~vLDiGcG~G~~~~~la~~~~~v~~---vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~ 94 (185)
T 3mti_A 20 LDDE--SIVVDATMGNGNDTAFLAGLSKKVYA---FDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAI 94 (185)
T ss_dssp CCTT--CEEEESCCTTSHHHHHHHTTSSEEEE---EESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred CCCC--CEEEEEcCCCCHHHHHHHHhCCEEEE---EECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEE
Confidence 4444 47999999999999999877433333 3433 44444433 354 33344333443323 47899996
Q ss_pred cc-cccccccc--CCCCCChhhHHhhhhhcccCCceEEEecC------hHHHHHHHhhhhcCC---ceEEEeeccccCCC
Q 039518 535 AN-HLFSHYKN--RGEVCSLEDIMLEMDLIIRPQGFIIIRDE------KSLITRIRDLAPKFL---WDVELHSLENREKK 602 (617)
Q Consensus 535 ~~-~~~s~~~~--~~~~c~~~~~l~e~dRilRP~G~~i~~d~------~~~~~~~~~~~~~~~---W~~~~~~~e~~~~~ 602 (617)
++ +.+..-.. ....-.....|-|+-|+|+|||.+++..- .+..+.+.+.+..+. |.+.....-+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 174 (185)
T 3mti_A 95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINT 174 (185)
T ss_dssp EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSC
T ss_pred EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCC
Confidence 54 22221000 00001123567899999999999998632 234455666665554 77766554444344
Q ss_pred ceeEEEEEe
Q 039518 603 MESVLICRK 611 (617)
Q Consensus 603 ~~~~l~~~k 611 (617)
+..+++..|
T Consensus 175 ~~~~~~i~~ 183 (185)
T 3mti_A 175 PPFLVMLEK 183 (185)
T ss_dssp CCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 556666665
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-06 Score=86.12 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=65.6
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH---hCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE---RGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e---rg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
+.++.+|||+|||+|.|+.+++++.. +..+.++|+...+...... .+.++.....+++...++.+.||+|+|..+.
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~ap 150 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGE 150 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCcc
Confidence 45677899999999999998877621 2244455554322000100 1224444555555566778899999986522
Q ss_pred ---cccccchH--HHHHHHHHhccCC-eEEEEEe
Q 039518 303 ---VDWHANDG--ILLKEVDRVLRPN-GYFVYSA 330 (617)
Q Consensus 303 ---~h~~~d~~--~~L~el~RvLrPG-G~Liis~ 330 (617)
+++.+... .+|..+.++|+|| |.|++-.
T Consensus 151 nsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV 184 (277)
T 3evf_A 151 SSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV 184 (277)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 22332222 3578889999999 9999965
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.9e-06 Score=87.65 Aligned_cols=103 Identities=11% Similarity=0.101 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCc-------------------------------------EEEeeecCCcHHHHHHHH
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQ-------------------------------------TMSFAPKDGHENQIQFAL 270 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~-------------------------------------~v~v~~iDis~~~lq~A~ 270 (617)
++..+||.+||+|.++..++..+.. ...+.++|+++.+++.|+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 4566999999999998877654221 125889999999999998
Q ss_pred Hh----CC--CcEEEEecCCCCCCCCCCeeEEEecccccccc---cchHHHHHHHHHhccC--CeEEEEEeC
Q 039518 271 ER----GI--GAMISALSTKQLPYPSSSFEMVHCSRCRVDWH---ANDGILLKEVDRVLRP--NGYFVYSAP 331 (617)
Q Consensus 271 er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~---~d~~~~L~el~RvLrP--GG~Liis~p 331 (617)
++ |+ .+.+...|+.+++.++ +||+|+++--...-. .+...+..++.+.||+ ||.+++.++
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 75 54 3788899998887654 899999974222111 2345567777778876 998888775
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-06 Score=88.49 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=61.8
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGE 547 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~ 547 (617)
.+|||+|||.|.++..|.+.--=|.-| |-. ..|..+-++.=|-..+.=-|.++.=+.+||+|.+...| +|
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~~v~gv---D~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~----- 111 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFERVHAV---DPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HW----- 111 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCSEEEEE---ESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TT-----
T ss_pred CCEEEEcCCCCHHHHHHHHhCCEEEEE---eCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hH-----
Confidence 479999999999999998764333333 333 44443333321222222223444323899999999888 45
Q ss_pred CCChhhHHhhhhhcccCCceEEEe
Q 039518 548 VCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 548 ~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+.+..+-|+-|||||||.+++-
T Consensus 112 -~~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 112 -FDLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp -CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -hhHHHHHHHHHHHcCCCCEEEEE
Confidence 24678999999999999999874
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.8e-06 Score=84.38 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTK 284 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~ 284 (617)
...+.+.+.+. ..++.+|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+.
T Consensus 16 ~i~~~iv~~~~-------~~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~ 85 (255)
T 3tqs_A 16 FVLQKIVSAIH-------PQKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQQKNITIYQNDAL 85 (255)
T ss_dssp HHHHHHHHHHC-------CCTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTTCTTEEEEESCTT
T ss_pred HHHHHHHHhcC-------CCCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhhCCCcEEEEcchH
Confidence 44455555542 23456799999999999999999863 6788899999999998873 46889999998
Q ss_pred CCCCCC----CCeeEEEec
Q 039518 285 QLPYPS----SSFEMVHCS 299 (617)
Q Consensus 285 ~Lpf~d----~sFDlV~~s 299 (617)
.+++++ ++|| |+++
T Consensus 86 ~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 86 QFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp TCCGGGSCCSSCEE-EEEE
T ss_pred hCCHHHhccCCCeE-EEec
Confidence 887643 5688 5555
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.7e-06 Score=82.15 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=84.8
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh---cccccccccCCCCCCCCCccchhhccccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR---GILGAFHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R---Glig~~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
-.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++ ++--+..|..+ ++ ++.+||+|.+..++.+.
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~- 119 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FE-VPTSIDTIVSTYAFHHL- 119 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CC-CCSCCSEEEEESCGGGS-
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cC-CCCCeEEEEECcchhcC-
Confidence 36899999999999999987754 33334444 555555555 22222223322 22 23899999999888764
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEecCh----H---------------------------HHHHHHhhhhcCCceEE
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----S---------------------------LITRIRDLAPKFLWDVE 592 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----~---------------------------~~~~~~~~~~~~~W~~~ 592 (617)
.+. ....+|-|+-|+|+|||.+++.+.. . ..++++++++.--+++.
T Consensus 120 --~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 196 (220)
T 3hnr_A 120 --TDD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVT 196 (220)
T ss_dssp --CHH-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEE
T ss_pred --ChH-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEE
Confidence 111 1123899999999999999997411 1 13667788888888776
Q ss_pred EeeccccCCCceeEEEEEec
Q 039518 593 LHSLENREKKMESVLICRKK 612 (617)
Q Consensus 593 ~~~~e~~~~~~~~~l~~~k~ 612 (617)
..... .-.=++.++|+
T Consensus 197 ~~~~~----~~~w~~~~~~~ 212 (220)
T 3hnr_A 197 FTRLN----HFVWVMEATKQ 212 (220)
T ss_dssp EEECS----SSEEEEEEEEC
T ss_pred Eeecc----ceEEEEeehhh
Confidence 66532 22345666664
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-06 Score=86.74 Aligned_cols=107 Identities=13% Similarity=0.200 Sum_probs=71.9
Q ss_pred HHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----ccc----ccccccCCCCCC
Q 039518 456 HYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GIL----GAFHDWCEPFST 525 (617)
Q Consensus 456 ~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Gli----g~~~~~~~~f~t 525 (617)
...+.+++..+ .+|||+|||.|+++..|... +. +|+-.|-. ..+..+-++ |+- -+..|+.+ +
T Consensus 63 ~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-- 134 (302)
T 3hem_A 63 LALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-F-- 134 (302)
T ss_dssp HHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-C--
T ss_pred HHHHHcCCCCc--CEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-c--
Confidence 33444445554 58999999999999998766 53 23333443 566665554 442 12233332 2
Q ss_pred CCCccchhhccccccccccCC----CCCChhhHHhhhhhcccCCceEEEec
Q 039518 526 YPRTYDLLHANHLFSHYKNRG----EVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~----~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+.+||+|.+..+|.+.. .. ..-....+|-|+-|+|+|||.+++.+
T Consensus 135 -~~~fD~v~~~~~~~~~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 135 -DEPVDRIVSLGAFEHFA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp -CCCCSEEEEESCGGGTT-CCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred -CCCccEEEEcchHHhcC-ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 79999999999988651 11 22445689999999999999999973
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-06 Score=86.47 Aligned_cols=110 Identities=11% Similarity=0.145 Sum_probs=71.1
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCC
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYP 527 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typ 527 (617)
++...+.+++..+ .+|||+|||.|.++..|.+. +. +|+-.|-. ..+..+-++ |+-....-.+..+..+|
T Consensus 79 ~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 153 (318)
T 2fk8_A 79 VDLNLDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA 153 (318)
T ss_dssp HHHHHTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred HHHHHHhcCCCCc--CEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC
Confidence 3334444445554 47999999999999888755 43 23333433 566555555 44221111122223346
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+||+|.+..+|.+. ..-....+|-|+-|+|+|||.+++.+
T Consensus 154 ~~fD~v~~~~~l~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHF----GHENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp CCCSEEEEESCGGGT----CGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCcCEEEEeChHHhc----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 899999999888754 12345689999999999999999963
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.3e-06 Score=83.54 Aligned_cols=105 Identities=10% Similarity=0.112 Sum_probs=67.8
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hccc---c-cccccCCCCC
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGIL---G-AFHDWCEPFS 524 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGli---g-~~~~~~~~f~ 524 (617)
....+.+++..+ .+|||+|||.|.++.+|... +.-| +-.|-. ..+..+-+ .|+- - ...|+.+ ++
T Consensus 26 ~~l~~~~~~~~~--~~VLDiGcG~G~~~~~la~~~~~~v---~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 99 (256)
T 1nkv_A 26 ATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDHGITG---TGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YV 99 (256)
T ss_dssp HHHHHHTCCCTT--CEEEEETCTTCHHHHHHHHHTCCEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CC
T ss_pred HHHHHhcCCCCC--CEEEEECCCCCHHHHHHHHhcCCeE---EEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CC
Confidence 334444555555 48999999999998888643 3222 222333 44444433 3442 1 2233332 33
Q ss_pred CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 525 TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 525 typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. +.+||+|.+.+++.++ . +...+|-|+-|+|||||.+++.+
T Consensus 100 ~-~~~fD~V~~~~~~~~~---~---~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 100 A-NEKCDVAACVGATWIA---G---GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp C-SSCEEEEEEESCGGGT---S---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred c-CCCCCEEEECCChHhc---C---CHHHHHHHHHHHcCCCeEEEEec
Confidence 2 6899999998877654 2 35789999999999999999974
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-06 Score=85.59 Aligned_cols=122 Identities=13% Similarity=0.078 Sum_probs=78.5
Q ss_pred CCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----ccc-cccccCCCCCCCCCccchhhccccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----ILG-AFHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----lig-~~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
..-.+|||+|||.|.++..|..... -+|.-.|-. ..+..+-++- -+- +..|..+ ++.-+.+||+|.+..++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 168 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET-ATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGG-CCCCSSCEEEEEEESCG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHH-CCCCCCCeEEEEEcchh
Confidence 3446899999999999998865431 122233433 5555555552 111 2223322 33223799999999888
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEecCh----------------HHHHHHHhhhhcCCceEEEe
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------------SLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~ 594 (617)
.++ .. -....+|-|+-|+|+|||++++.+.. ...++++++++.--++....
T Consensus 169 ~~~---~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 169 IYL---TD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp GGS---CH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred hhC---CH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 754 11 13568899999999999999998631 12366777777777776544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.00 E-value=4.7e-06 Score=84.62 Aligned_cols=99 Identities=19% Similarity=0.319 Sum_probs=66.8
Q ss_pred cCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----cc---ccc-ccccCCCCCCCCCccc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GI---LGA-FHDWCEPFSTYPRTYD 531 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Gl---ig~-~~~~~~~f~typrtyD 531 (617)
.+..+ .+|||+|||.|.++..|... +. +|+-.|-. ..+..+-++ |+ +-+ ..|..+ ++.-+.+||
T Consensus 79 ~~~~~--~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 152 (297)
T 2o57_A 79 VLQRQ--AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYD 152 (297)
T ss_dssp CCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEE
T ss_pred CCCCC--CEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc-CCCCCCCEe
Confidence 34444 58999999999999988765 43 33333443 555555443 43 212 223322 232137999
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+|.+.+++.++ .+ ...+|-|+-|+|||||.+++.+
T Consensus 153 ~v~~~~~l~~~---~~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 153 FIWSQDAFLHS---PD---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp EEEEESCGGGC---SC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecchhhhc---CC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 99999998876 33 6789999999999999999974
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0001 Score=78.55 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=57.4
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHH----Hhhcccc------cccccCCCCCCCCCccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAI----YNRGILG------AFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~----~~RGlig------~~~~~~~~f~typrtyDl~H~ 535 (617)
.+|||+|||.|.|+.+|... ..-|.. .|.. ..+..+ -+.|+-. ...|..+.++ +.+||+|-+
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~g---vD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--~~~fD~Ii~ 298 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVF---VDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLC 298 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEE---EESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--TTCEEEEEE
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEE---EECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--CCCeeEEEE
Confidence 68999999999999888654 222222 2222 223222 2334321 2333334333 379999998
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+..|..- ....+-....++-++-|+|+|||.+++.
T Consensus 299 nppfh~~-~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 299 NPPFHQQ-HALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp CCCC--------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccC-cccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 8777521 0011222336789999999999999995
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.4e-06 Score=80.57 Aligned_cols=102 Identities=14% Similarity=0.278 Sum_probs=70.6
Q ss_pred CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----ccccc-cccCCCCCCCCCccchhhcc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----ILGAF-HDWCEPFSTYPRTYDLLHAN 536 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----lig~~-~~~~~~f~typrtyDl~H~~ 536 (617)
+....-.+|||+|||.|.++.+|.... .+|+-.|-. ..+..+-++. -+-++ .|.. .++ -+.+||+|.+.
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~ 121 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDIL-QFS-TAELFDLIVVA 121 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTT-TCC-CSCCEEEEEEE
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchh-hCC-CCCCccEEEEc
Confidence 445556899999999999999998774 255555655 5666665553 12222 2222 233 25899999999
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+++.+. .+.-.+..+|-|+-|+|+|||.+++.+
T Consensus 122 ~~l~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 122 EVLYYL---EDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp SCGGGS---SSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cHHHhC---CCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 888865 332334567999999999999999963
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-06 Score=85.10 Aligned_cols=93 Identities=13% Similarity=0.166 Sum_probs=65.7
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCC---CCCCCCCccchhhcccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCE---PFSTYPRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~---~f~typrtyDl~H~~~~~s~~~~ 544 (617)
.+|||+|||.|.++.+|.+...= |+-.|-. ..+..+-++ +--+..|..+ +|+ +.+||+|.+.+++.+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~--~~~fD~i~~~~~l~~~-- 114 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLP--DKYLDGVMISHFVEHL-- 114 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSC--TTCBSEEEEESCGGGS--
T ss_pred CeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHHhh-cceeeccHHHHhhhcC--CCCeeEEEECCchhhC--
Confidence 58999999999999988765442 2333444 667777666 2111122222 333 3899999999998864
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
..-.+..+|-|+-|+|+|||++++.
T Consensus 115 --~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 115 --DPERLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp --CGGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred --CcHHHHHHHHHHHHHcCCCcEEEEE
Confidence 2234568999999999999999997
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.2e-06 Score=80.95 Aligned_cols=115 Identities=10% Similarity=0.104 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHhcc--CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc--ccccccccCCC
Q 039518 448 SFWQDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEP 522 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~--~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~ 522 (617)
..|...++.+.+.+. +. .-.+|||+|||.|.++..|.+..- +|.-.|.. ..+..+-++. +--+..|..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~- 94 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRTP--EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRD- 94 (239)
T ss_dssp CCHHHHHHHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTT-
T ss_pred hhHHHHHHHHHHHHHHhcC--CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHH-
Confidence 455555555555544 32 236899999999999998876532 33334444 5666665552 2112223322
Q ss_pred CCCCCCccchhhc-cccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 523 FSTYPRTYDLLHA-NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 523 f~typrtyDl~H~-~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
++. +.+||+|.+ .+++.+. .+.-....+|-++-|+|+|||.+++.+
T Consensus 95 ~~~-~~~~D~v~~~~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 95 FRL-GRKFSAVVSMFSSVGYL---KTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CCC-SSCEEEEEECTTGGGGC---CSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred ccc-CCCCcEEEEcCchHhhc---CCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 332 689999994 4466643 222345688999999999999999973
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.98 E-value=5.3e-06 Score=77.65 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=75.5
Q ss_pred HHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc-----cccccccCCCCCCCC
Q 039518 458 WQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-----LGAFHDWCEPFSTYP 527 (617)
Q Consensus 458 ~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-----ig~~~~~~~~f~typ 527 (617)
.+.+.+..+ .+|||+|||.|.++.++..... +|.-.|.. ..+..+-++ |+ --+..|+.+.++ +
T Consensus 45 ~~~~~~~~~--~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~ 117 (194)
T 1dus_A 45 VENVVVDKD--DDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--D 117 (194)
T ss_dssp HHHCCCCTT--CEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--T
T ss_pred HHHcccCCC--CeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--c
Confidence 333444433 5899999999999988877633 23333433 444444443 43 223345555444 5
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-HHHHHHHhhhhcCCceEEEe
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-SLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~ 594 (617)
.+||+|.++..|.. ..-.+..++-++-|+|+|||.+++.+.. ....++.+..+..-+++...
T Consensus 118 ~~~D~v~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (194)
T 1dus_A 118 RKYNKIITNPPIRA-----GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETV 180 (194)
T ss_dssp SCEEEEEECCCSTT-----CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEE
T ss_pred CCceEEEECCCccc-----chhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEE
Confidence 79999998776541 1123457899999999999999997543 23333444444433344443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.7e-06 Score=82.97 Aligned_cols=92 Identities=17% Similarity=0.309 Sum_probs=64.4
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh---cccccccccCCCCCCCCCccchhhccccccccccC
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR---GILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNR 545 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R---Glig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~ 545 (617)
+|||+|||.|.++..|.+..- +|+-.|-. ..+..+-++ ++--+..|..+.+ .+.+||+|++.+++.+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~--- 116 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ--LPRRYDNIVLTHVLEHI--- 116 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC--CSSCEEEEEEESCGGGC---
T ss_pred cEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC--cCCcccEEEEhhHHHhh---
Confidence 599999999999999976542 23333443 555555555 3222222333332 25899999999999865
Q ss_pred CCCCChhhHHhhhh-hcccCCceEEEec
Q 039518 546 GEVCSLEDIMLEMD-LIIRPQGFIIIRD 572 (617)
Q Consensus 546 ~~~c~~~~~l~e~d-RilRP~G~~i~~d 572 (617)
. +...+|-|+- |+|+|||++++.+
T Consensus 117 ~---~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 117 D---DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp S---SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred c---CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 2 3468999999 9999999999974
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.6e-06 Score=92.83 Aligned_cols=145 Identities=9% Similarity=0.089 Sum_probs=99.4
Q ss_pred cccccchhhHHHHHHHHHHhcc--CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccccccc
Q 039518 441 EEFTTDTSFWQDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFH 517 (617)
Q Consensus 441 ~~f~~d~~~w~~~v~~y~~~~~--~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~ 517 (617)
..|...+..|.+....+.+.+- +....=.+|||+|||.|.++.+|.+... +|+-.|-. +.+..+-++|+-....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~ 155 (416)
T 4e2x_A 79 PYHSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTD 155 (416)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECS
T ss_pred cCcCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCccee
Confidence 3344566778888777665442 3333346899999999999999988765 44444555 7888888887533221
Q ss_pred ccCC----CCCCC-CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh------------------
Q 039518 518 DWCE----PFSTY-PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK------------------ 574 (617)
Q Consensus 518 ~~~~----~f~ty-prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~------------------ 574 (617)
.+.. .++ + +.+||+|.+.++|.+. . +...+|-|+-|+|+|||.+++....
T Consensus 156 ~~~~~~~~~l~-~~~~~fD~I~~~~vl~h~---~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 228 (416)
T 4e2x_A 156 FFEKATADDVR-RTEGPANVIYAANTLCHI---P---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHF 228 (416)
T ss_dssp CCSHHHHHHHH-HHHCCEEEEEEESCGGGC---T---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCC
T ss_pred eechhhHhhcc-cCCCCEEEEEECChHHhc---C---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhh
Confidence 1111 111 2 3899999999999976 2 5789999999999999999997321
Q ss_pred --HHHHHHHhhhhcCCceEEEee
Q 039518 575 --SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 575 --~~~~~~~~~~~~~~W~~~~~~ 595 (617)
-..+.++++++.--+++....
T Consensus 229 ~~~s~~~l~~ll~~aGf~~~~~~ 251 (416)
T 4e2x_A 229 FLFSATSVQGMAQRCGFELVDVQ 251 (416)
T ss_dssp EECCHHHHHHHHHHTTEEEEEEE
T ss_pred hcCCHHHHHHHHHHcCCEEEEEE
Confidence 112567777777777765443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.9e-05 Score=83.85 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=66.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCC-----------
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPS----------- 290 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d----------- 290 (617)
+.+|||+|||+|.++..|++... .+.++|+++.+++.|+++ ++ ++.+..+|+.++. +..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~~---~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~ 290 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 290 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGSS---EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccc
Confidence 35699999999999999987543 678889999999988765 44 5778877765431 111
Q ss_pred ---CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 291 ---SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 291 ---~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+||+|++.--. ..+..++.+.|+++|.+++..
T Consensus 291 ~~~~~fD~Vv~dPPr-------~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 291 LKSYQCETIFVDPPR-------SGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGGCCEEEEEECCCT-------TCCCHHHHHHHTTSSEEEEEE
T ss_pred cccCCCCEEEECcCc-------cccHHHHHHHHhCCCEEEEEE
Confidence 379999864211 123456777788888888765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-05 Score=77.61 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=79.5
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccc----cccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILG----AFHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig----~~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++.+|.....-|.. .|-. ..+..+-++ |+.. +..|..+. + .+.+||+|.+..+|
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~g---vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVG---LDISESALAKANETYGSSPKAEYFSFVKEDVFTW-R-PTELFDLIFDYVFF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEE---ECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTC-C-CSSCEEEEEEESST
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEE---EECCHHHHHHHHHHhhccCCCcceEEEECchhcC-C-CCCCeeEEEEChhh
Confidence 48999999999999999876554333 3443 445444444 2222 12233332 2 23699999998888
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEecCh-----------HHHHHHHhhhhcCCceEEEee
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-----------SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-----------~~~~~~~~~~~~~~W~~~~~~ 595 (617)
.+. ..-....+|-++-|+|+|||++++.+.. -..++++++++.--|+.....
T Consensus 143 ~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 143 CAI----EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp TTS----CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred hcC----CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 754 2335568999999999999999985321 135678888888888876543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.97 E-value=1e-05 Score=78.06 Aligned_cols=139 Identities=12% Similarity=0.065 Sum_probs=87.4
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCCC---eEEEEeccCCCC-chhHHHHhh----ccc---ccccccCCCCCCCC
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSLP---VWVMNIVPISMK-NTLSAIYNR----GIL---GAFHDWCEPFSTYP 527 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~---v~vmnv~p~~~~-~~l~~~~~R----Gli---g~~~~~~~~f~typ 527 (617)
+.+++..+ .+|||+|||.|.++.+|...- .-|.- .|.. ..+..+-++ |+- -+..|.. .++.-.
T Consensus 31 ~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~v~~---vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~ 104 (219)
T 3dh0_A 31 KEFGLKEG--MTVLDVGTGAGFYLPYLSKMVGEKGKVYA---IDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN-KIPLPD 104 (219)
T ss_dssp HHHTCCTT--CEEEESSCTTCTTHHHHHHHHTTTCEEEE---EESCHHHHHHHHHHHHHHTCTTEEEEECBTT-BCSSCS
T ss_pred HHhCCCCC--CEEEEEecCCCHHHHHHHHHhCCCcEEEE---EECCHHHHHHHHHHHHHcCCCcEEEEecccc-cCCCCC
Confidence 33445544 589999999999999886432 22222 2332 444444433 321 1222332 223223
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-------------HHHHHHHhhhhcCCceEEEe
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-------------SLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-------------~~~~~~~~~~~~~~W~~~~~ 594 (617)
.+||+|.+..++.++ . +...+|-|+-|+|+|||.+++.+.. -..++++++++.-.++....
T Consensus 105 ~~fD~v~~~~~l~~~---~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 105 NTVDFIFMAFTFHEL---S---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp SCEEEEEEESCGGGC---S---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred CCeeEEEeehhhhhc---C---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 789999999988865 2 3578999999999999999997421 12567888888888886554
Q ss_pred eccccCCCceeEEEEEec
Q 039518 595 SLENREKKMESVLICRKK 612 (617)
Q Consensus 595 ~~e~~~~~~~~~l~~~k~ 612 (617)
..-. ....+++++|+
T Consensus 179 ~~~~---~~~~~~~~~k~ 193 (219)
T 3dh0_A 179 VEVG---KYCFGVYAMIV 193 (219)
T ss_dssp EEET---TTEEEEEEECC
T ss_pred EeeC---CceEEEEEEec
Confidence 3211 23567777775
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.6e-06 Score=88.62 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-------------------CCC-cEEEEecCCCCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-------------------GIG-AMISALSTKQLP 287 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-------------------g~~-~~~~~~d~~~Lp 287 (617)
++.+|||+|||+|.++..++.+.. ...+.++|+++.+++.++++ ++. +.+..+|+..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 356799999999999999988621 12578899999999888764 443 667777764432
Q ss_pred C-CCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 288 Y-PSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 288 f-~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
. ..+.||+|+.. +.. ....++..+.+.|+|||.++++.
T Consensus 126 ~~~~~~fD~I~lD----P~~-~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 AERHRYFHFIDLD----PFG-SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHSTTCEEEEEEC----CSS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhccCCCCEEEeC----CCC-CHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 13579999943 222 34678999999999999988875
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=6.7e-06 Score=81.11 Aligned_cols=105 Identities=11% Similarity=0.245 Sum_probs=70.6
Q ss_pred HHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc--cc-cccccCCCCCCCC
Q 039518 456 HYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI--LG-AFHDWCEPFSTYP 527 (617)
Q Consensus 456 ~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl--ig-~~~~~~~~f~typ 527 (617)
.+.+.+++..+ .+|||+|||.|.++.+|.+..- +|+-.|-. ..+..+-+ +|+ +- +..|. +.++.-+
T Consensus 12 ~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~ 85 (239)
T 1xxl_A 12 LMIKTAECRAE--HRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPD 85 (239)
T ss_dssp HHHHHHTCCTT--CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCT
T ss_pred hHHHHhCcCCC--CEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccCCCCC
Confidence 34555556555 5899999999999998876542 33444443 44444433 243 22 22233 3344223
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+||+|.+..++.++ . +...+|-|+-|+|||||++++.+
T Consensus 86 ~~fD~v~~~~~l~~~---~---~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 86 DSFDIITCRYAAHHF---S---DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp TCEEEEEEESCGGGC---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEEEECCchhhc---c---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 899999999888765 2 46789999999999999999964
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-05 Score=81.67 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=63.5
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC--CCcEEEEecCCC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG--IGAMISALSTKQ 285 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg--~~~~~~~~d~~~ 285 (617)
...+.|.+.+.. .++ +|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..
T Consensus 34 ~i~~~Iv~~~~~-------~~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~ 102 (271)
T 3fut_A 34 AHLRRIVEAARP-------FTG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSGLPVRLVFQDALL 102 (271)
T ss_dssp HHHHHHHHHHCC-------CCS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTTSSEEEEESCGGG
T ss_pred HHHHHHHHhcCC-------CCC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCCCCEEEEECChhh
Confidence 455555555422 345 699999999999999999874 5778899999999998873 358889999988
Q ss_pred CCCCCC-CeeEEEecc
Q 039518 286 LPYPSS-SFEMVHCSR 300 (617)
Q Consensus 286 Lpf~d~-sFDlV~~s~ 300 (617)
+++++. .||.|+++.
T Consensus 103 ~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 103 YPWEEVPQGSLLVANL 118 (271)
T ss_dssp SCGGGSCTTEEEEEEE
T ss_pred CChhhccCccEEEecC
Confidence 887643 689998764
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.1e-06 Score=83.04 Aligned_cols=104 Identities=22% Similarity=0.333 Sum_probs=67.5
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----ccc---c-cccccCCCCCCC
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GIL---G-AFHDWCEPFSTY 526 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Gli---g-~~~~~~~~f~ty 526 (617)
..+.+++..+ .+|||+|||.|.++..|... +. +|+-.|-. ..+..+-++ |+- - +..|..+ ++.-
T Consensus 53 l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~ 126 (273)
T 3bus_A 53 MIALLDVRSG--DRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-LPFE 126 (273)
T ss_dssp HHHHSCCCTT--CEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC
T ss_pred HHHhcCCCCC--CEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-CCCC
Confidence 3444445544 58999999999999888652 33 22333333 455554443 542 1 2223322 2211
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+.+||+|.+.++|.+. . +...+|-|+-|+|+|||.+++.+
T Consensus 127 ~~~fD~v~~~~~l~~~---~---~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 127 DASFDAVWALESLHHM---P---DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp TTCEEEEEEESCTTTS---S---CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCccEEEEechhhhC---C---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 3799999999888865 2 24789999999999999999975
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.9e-05 Score=75.61 Aligned_cols=151 Identities=11% Similarity=0.037 Sum_probs=84.5
Q ss_pred ccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hcc--ccc
Q 039518 444 TTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGI--LGA 515 (617)
Q Consensus 444 ~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGl--ig~ 515 (617)
..+++.|.+.+-......+.-.+ .+|||+|||.|.++.+|... |-. +|+-.|.. ..+..+-+ .|+ +-+
T Consensus 44 ~~~~~~~~~~~~~~l~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~ 119 (207)
T 1jsx_A 44 RDPNEMLVRHILDSIVVAPYLQG--ERFIDVGTGPGLPGIPLSIVRPEA--HFTLLDSLGKRVRFLRQVQHELKLENIEP 119 (207)
T ss_dssp ----CHHHHHHHHHHHHGGGCCS--SEEEEETCTTTTTHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHTTCSSEEE
T ss_pred CCHHHHHHHHHHhhhhhhhhcCC--CeEEEECCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCeEE
Confidence 34455565555444332221122 47999999999998888642 211 22222332 33333333 244 222
Q ss_pred c-cccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEe
Q 039518 516 F-HDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 516 ~-~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
+ .|+.+..+ +.+||+|.+..+ ..+..++-++-|+|+|||++++......-++++++.+ .|+....
T Consensus 120 ~~~d~~~~~~--~~~~D~i~~~~~----------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~ 185 (207)
T 1jsx_A 120 VQSRVEEFPS--EPPFDGVISRAF----------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESV 185 (207)
T ss_dssp EECCTTTSCC--CSCEEEEECSCS----------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEE
T ss_pred EecchhhCCc--cCCcCEEEEecc----------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeee
Confidence 2 23333221 378999986432 2356899999999999999999866555667777776 6775432
Q ss_pred e--ccccCCCceeEEEEEec
Q 039518 595 S--LENREKKMESVLICRKK 612 (617)
Q Consensus 595 ~--~e~~~~~~~~~l~~~k~ 612 (617)
. .-....+...++++.|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 186 VKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp EEEECC--CCEEEEEEEEEC
T ss_pred eeeccCCCCCceEEEEEEec
Confidence 1 12222344677777764
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.8e-06 Score=77.40 Aligned_cols=143 Identities=10% Similarity=0.065 Sum_probs=88.6
Q ss_pred CCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhh----cc---cccc-cccCCCCC-CCCCcc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNR----GI---LGAF-HDWCEPFS-TYPRTY 530 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~R----Gl---ig~~-~~~~~~f~-typrty 530 (617)
+..+ .+|||+|||.|.++.+|.+. +-- +|+-.|-. ..+..+-++ |+ +-+. .|. +.++ ..+.+|
T Consensus 20 ~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~f 94 (197)
T 3eey_A 20 VKEG--DTVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH-QNMDKYIDCPV 94 (197)
T ss_dssp CCTT--CEEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG-GGGGGTCCSCE
T ss_pred CCCC--CEEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHhhhccCCc
Confidence 5555 48999999999999888654 211 23334444 455554443 33 2222 222 2233 234899
Q ss_pred chhhccccccccccCCCCC------ChhhHHhhhhhcccCCceEEEec------ChHHHHHHHhhhhcC---CceEEEee
Q 039518 531 DLLHANHLFSHYKNRGEVC------SLEDIMLEMDLIIRPQGFIIIRD------EKSLITRIRDLAPKF---LWDVELHS 595 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c------~~~~~l~e~dRilRP~G~~i~~d------~~~~~~~~~~~~~~~---~W~~~~~~ 595 (617)
|+|-++..+-.. .+.. ....++-++-|+|+|||.+++.. ..+..+.+.+.++.+ .|++...+
T Consensus 95 D~v~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~ 171 (197)
T 3eey_A 95 KAVMFNLGYLPS---GDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTD 171 (197)
T ss_dssp EEEEEEESBCTT---SCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEE
T ss_pred eEEEEcCCcccC---cccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 999987655100 1111 12368999999999999999874 223455566666555 48888777
Q ss_pred ccccCCCceeEEEEEecc
Q 039518 596 LENREKKMESVLICRKKF 613 (617)
Q Consensus 596 ~e~~~~~~~~~l~~~k~~ 613 (617)
.-+....+..++|.+|..
T Consensus 172 ~~~~~~~pp~~~~~~~~~ 189 (197)
T 3eey_A 172 FINQANCPPILVCIEKIS 189 (197)
T ss_dssp ETTCCSCCCEEEEEEECC
T ss_pred eccCccCCCeEEEEEEcc
Confidence 666666777888888864
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.3e-06 Score=80.24 Aligned_cols=95 Identities=14% Similarity=0.214 Sum_probs=66.3
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccc---cccccCCCCCCCCCccchhhcccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILG---AFHDWCEPFSTYPRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig---~~~~~~~~f~typrtyDl~H~~~~~s~~~~ 544 (617)
.+|||+|||.|.++.+|..... +|+-.|-. ..+..+-++|+.. +..|..+.++ +.+||+|.+..++.+.
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~l~~~-- 120 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTP--DRQWDAVFFAHWLAHV-- 120 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCC--SSCEEEEEEESCGGGS--
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCC--CCceeEEEEechhhcC--
Confidence 3899999999999999976643 33333443 5666666666322 2223333222 4899999999988864
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. .-.+..+|-|+-|+|+|||.+++.+
T Consensus 121 -~-~~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 121 -P-DDRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp -C-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -C-HHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 2 1224689999999999999999974
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.2e-05 Score=76.95 Aligned_cols=116 Identities=17% Similarity=0.270 Sum_probs=75.8
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCCCccchhhccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
.+|||+|||.|.++.+|...+. .+|+-.|.. ..+..+-++ |+-.+----...+...+.+||+|.++..+..
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~-- 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI-- 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH--
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH--
Confidence 5899999999999999877653 123333433 444444443 4422111111222223589999998776653
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCCceEEEee
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~ 595 (617)
+..+|-++-|+|+|||.+++.+ .....+.+.+++....++.....
T Consensus 138 -------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEE
T ss_pred -------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEee
Confidence 3578999999999999999974 33446677777777777765543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.4e-06 Score=83.26 Aligned_cols=116 Identities=13% Similarity=0.226 Sum_probs=74.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc-cc-cccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI-LG-AFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl-ig-~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
..|||+|||.|.++.+|..... +|+-.|-. ..+..+-+ .|+ +- +..|..+ ++. +.+||+|.+..+|.+
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINA-ANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CCC-CSCEEEEEECSSGGG
T ss_pred CcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-ccc-cCCccEEEEccchhh
Confidence 5799999999999999987754 33334443 44444333 243 11 1123222 222 689999999998875
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEecC--------------hHHHHHHHhhhhcCCceEEEee
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE--------------KSLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~--------------~~~~~~~~~~~~~~~W~~~~~~ 595 (617)
. +.-.+..+|-++-|+|+|||.+++-.. .-.-++++++... |++....
T Consensus 197 ~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 197 L----NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp S----CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred C----CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 3 334566899999999999999777411 0113456666665 8876654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=7.1e-06 Score=81.13 Aligned_cols=103 Identities=15% Similarity=0.209 Sum_probs=68.3
Q ss_pred HHHhcc-CCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----cccc----cccccCCCCCC
Q 039518 457 YWQLMN-VNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GILG----AFHDWCEPFST 525 (617)
Q Consensus 457 y~~~~~-~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Glig----~~~~~~~~f~t 525 (617)
..+.+. +..+ .+|||+|||.|.++..|... +. .|+-.|-. ..+..+-++ |+-. +..|. +.++.
T Consensus 37 ~l~~l~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~ 110 (257)
T 3f4k_A 37 AVSFINELTDD--AKIADIGCGTGGQTLFLADYVKG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPF 110 (257)
T ss_dssp HHTTSCCCCTT--CEEEEETCTTSHHHHHHHHHCCS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSS
T ss_pred HHHHHhcCCCC--CeEEEeCCCCCHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCC
Confidence 344442 4444 48999999999999888654 22 23333433 455554433 4322 23344 33442
Q ss_pred CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 526 YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
-+.+||+|++.+++.+. ....+|-|+-|+|||||++++.+
T Consensus 111 ~~~~fD~v~~~~~l~~~-------~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 111 QNEELDLIWSEGAIYNI-------GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp CTTCEEEEEEESCSCCC-------CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCEEEEEecChHhhc-------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 23899999999888742 46789999999999999999985
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-05 Score=76.52 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=88.4
Q ss_pred cchhhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhhhcc--CCCeEEEEeccCCCC-chhHHHHh----hcc--cc
Q 039518 445 TDTSFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAVALN--SLPVWVMNIVPISMK-NTLSAIYN----RGI--LG 514 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa~l~--~~~v~vmnv~p~~~~-~~l~~~~~----RGl--ig 514 (617)
...+.|.+.+-.....+. +....-.+|||+|||.|.++..|. ....-|.-| |.. ..+.++-+ .|+ +-
T Consensus 47 ~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~ 123 (240)
T 1xdz_A 47 EKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIV---DSLNKRITFLEKLSEALQLENTT 123 (240)
T ss_dssp SHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHTCSSEE
T ss_pred CHHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCEE
Confidence 344566655544333222 211223589999999998887776 333333333 332 33333322 354 33
Q ss_pred cccccCCCCC---CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec---ChHHHHHHHhhhhcCC
Q 039518 515 AFHDWCEPFS---TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD---EKSLITRIRDLAPKFL 588 (617)
Q Consensus 515 ~~~~~~~~f~---typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d---~~~~~~~~~~~~~~~~ 588 (617)
+++.=.+.++ ..+.+||+|.+..+ ..+..++-++-|+|+|||.+++.+ ..+.+.++.+.++...
T Consensus 124 ~~~~d~~~~~~~~~~~~~fD~V~~~~~----------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g 193 (240)
T 1xdz_A 124 FCHDRAETFGQRKDVRESYDIVTARAV----------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLG 193 (240)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEEECC----------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTT
T ss_pred EEeccHHHhcccccccCCccEEEEecc----------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcC
Confidence 3332112222 12478999997552 236689999999999999999874 3455666777777777
Q ss_pred ceEEEeec--cccCCCceeEEEEEec
Q 039518 589 WDVELHSL--ENREKKMESVLICRKK 612 (617)
Q Consensus 589 W~~~~~~~--e~~~~~~~~~l~~~k~ 612 (617)
++...... -........+++.+|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 194 GELENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred CeEeEEEEEecCCCCCceEEEEEEec
Confidence 87644321 1111233456666665
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.2e-06 Score=78.47 Aligned_cols=118 Identities=13% Similarity=0.095 Sum_probs=80.5
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh-cccccccccCCCCCCCCCccchhhccccccccccCC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR-GILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRG 546 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R-Glig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~ 546 (617)
.+|||+|||.|.++..|.+... +|+-.|.. ..+..+-++ ++--...|.. .++ .+.+||+|.+..++.+.
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~---- 115 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLFH-QLD-AIDAYDAVWAHACLLHV---- 115 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC-CCSCEEEEEECSCGGGS----
T ss_pred CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeeec-cCC-CCCcEEEEEecCchhhc----
Confidence 5899999999999999987754 33334444 566666666 4322233332 233 35899999999888754
Q ss_pred CCCChhhHHhhhhhcccCCceEEEecCh---------------HHHHHHHhhhhcCC-ceEEEee
Q 039518 547 EVCSLEDIMLEMDLIIRPQGFIIIRDEK---------------SLITRIRDLAPKFL-WDVELHS 595 (617)
Q Consensus 547 ~~c~~~~~l~e~dRilRP~G~~i~~d~~---------------~~~~~~~~~~~~~~-W~~~~~~ 595 (617)
..-....+|-|+-|+|+|||++++.... -..+.++++++.-- ++.....
T Consensus 116 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 116 PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 1224567999999999999999997211 13567777777776 7765543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.1e-05 Score=77.75 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=67.1
Q ss_pred CeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCC-Cccchhhcccccccccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYP-RTYDLLHANHLFSHYKN 544 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typ-rtyDl~H~~~~~s~~~~ 544 (617)
.-.+|||+|||.|.++.+|...+. +++-.|.. ..+..+-++.---+..|..+....+| .+||+|.+.+++.+.
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~-- 106 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHL-- 106 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGS--
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhc--
Confidence 346899999999999999988763 34444544 55555555542112223332112233 899999999988865
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. +...+|-|+-|+|+|||++++..
T Consensus 107 -~---~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 107 -F---DPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp -S---CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred -C---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 34689999999999999999973
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.88 E-value=8.4e-06 Score=81.13 Aligned_cols=95 Identities=13% Similarity=0.203 Sum_probs=65.3
Q ss_pred CeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----ccc---ccccccCCCCCCCC-Cccchhhccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GIL---GAFHDWCEPFSTYP-RTYDLLHANH 537 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gli---g~~~~~~~~f~typ-rtyDl~H~~~ 537 (617)
.-.+|||+|||.|.++..|....- .|+-.|.. ..+..+-++ |+- -+..|..+ ++ +| .+||+|.+..
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-l~-~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-MP-FTDERFHIVTCRI 111 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-CC-SCTTCEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh-CC-CCCCCEEEEEEhh
Confidence 346899999999999998876532 44444544 555555443 431 12223322 33 33 8999999998
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
++.++ . +...+|-|+-|+|||||++++.+
T Consensus 112 ~l~~~---~---d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AAHHF---P---NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CGGGC---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHhc---C---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 88765 2 45689999999999999999963
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.2e-06 Score=80.21 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=79.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc----cccccccCCCCCCCCCccchhhccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI----LGAFHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl----ig~~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
.+|||+|||.|.++.+|.....- |+-.|-. ..+..+-+++. --+..|.. .++.-+.+||+|.+.+++.+.
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~- 129 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERGEGPDLSFIKGDLS-SLPFENEQFEAIMAINSLEWT- 129 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTTCBTTEEEEECBTT-BCSSCTTCEEEEEEESCTTSS-
T ss_pred CeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhcccCCceEEEcchh-cCCCCCCCccEEEEcChHhhc-
Confidence 48999999999999999877543 3333444 66777777642 11122222 233224899999999888854
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEecCh----------------------HHHHHHHhhhhcCCceEEEe
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------------------SLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------------------~~~~~~~~~~~~~~W~~~~~ 594 (617)
. ....+|-|+-|+|+|||.+++.+.. -...++++++..--+++...
T Consensus 130 --~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 130 --E---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp --S---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred --c---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 2 3468899999999999999997410 11246777777777776544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.6e-05 Score=77.18 Aligned_cols=125 Identities=10% Similarity=0.070 Sum_probs=76.1
Q ss_pred CeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----------------------------------
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG---------------------------------- 511 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG---------------------------------- 511 (617)
.-.+|||+|||.|.++..|..... -+|+-.|-. ..+..+-++-
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 347899999999999988876654 234444443 4444443221
Q ss_pred -cc--ccccccCCCCCCCC---CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-----------
Q 039518 512 -IL--GAFHDWCEPFSTYP---RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------- 574 (617)
Q Consensus 512 -li--g~~~~~~~~f~typ---rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------- 574 (617)
-+ -+..|..+.-+.-+ .+||+|.+..++.... .+.=....+|-|+-|+|+|||++|+.+..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 211 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC--PDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK 211 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC--SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc--CChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcc
Confidence 02 11223333222123 7999999888876320 11113457899999999999999997521
Q ss_pred -----HHHHHHHhhhhcCCceEEEee
Q 039518 575 -----SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 575 -----~~~~~~~~~~~~~~W~~~~~~ 595 (617)
-..+.+.+++...-+++....
T Consensus 212 ~~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 212 FSSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp EECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccCHHHHHHHHHHCCCEEEEEE
Confidence 023467777777777665543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=75.16 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=75.9
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc---c-ccccccCCCCCCCCCccc
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI---L-GAFHDWCEPFSTYPRTYD 531 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl---i-g~~~~~~~~f~typrtyD 531 (617)
+.+..+ .+|||+|||.|.++..|...-. +|.-.|.. ..+..+-+ .|+ + -.-.|+.+.++.. .+||
T Consensus 29 ~~~~~~--~~vldiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D 102 (192)
T 1l3i_A 29 AEPGKN--DVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDID 102 (192)
T ss_dssp HCCCTT--CEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEE
T ss_pred cCCCCC--CEEEEECCCCCHHHHHHHHhcC---EEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCC
Confidence 445554 5899999999999988876652 33333443 44444433 233 1 1123333333321 4799
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCCceEEEe
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
+|-+++.+. .+..+|-++-|+|+|||.+++.+ ..+...++.++++...|++...
T Consensus 103 ~v~~~~~~~---------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 103 IAVVGGSGG---------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp EEEESCCTT---------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEECCchH---------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEEE
Confidence 998766553 24688999999999999999975 3566677777777666655443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.8e-05 Score=79.46 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=67.4
Q ss_pred CCeEEEECCCCcHHHHHhccC----------------CCcEEEeeecCCc-----------HHHHHHHHH-hC--CCcEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPL----------------DIQTMSFAPKDGH-----------ENQIQFALE-RG--IGAMI 278 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~----------------gv~~v~v~~iDis-----------~~~lq~A~e-rg--~~~~~ 278 (617)
..+|+|+||++|..+..+.+. ...-+.+...|+. +.+.+.+++ .| .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 467999999999888776543 0123566667766 444443333 23 23445
Q ss_pred EEec---CCCCCCCCCCeeEEEecccccccccchH---------------------------------------HHHHHH
Q 039518 279 SALS---TKQLPYPSSSFEMVHCSRCRVDWHANDG---------------------------------------ILLKEV 316 (617)
Q Consensus 279 ~~~d---~~~Lpf~d~sFDlV~~s~~l~h~~~d~~---------------------------------------~~L~el 316 (617)
..+. ...-.||+++||+|+++.+ +||..+.. .+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3344689999999999875 57753221 126666
Q ss_pred HHhccCCeEEEEEeCCC
Q 039518 317 DRVLRPNGYFVYSAPPA 333 (617)
Q Consensus 317 ~RvLrPGG~Liis~p~~ 333 (617)
++.|+|||.++++....
T Consensus 212 a~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 212 SEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHEEEEEEEEEEEECC
T ss_pred HHHhccCCeEEEEEecC
Confidence 89999999999997643
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.2e-05 Score=79.47 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=65.4
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh--c----ccccccccCCCCCCCCCccchhhcccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR--G----ILGAFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R--G----lig~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
-.+|||+|||.|.++..|.+... +|+-.|-. ..+..+-++ + +--+..|. +.++.-+.+||+|++..++.
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCGG
T ss_pred CCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCchh
Confidence 36899999999999999987754 33333444 556666555 1 21222333 23332137999999988887
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+. . +...+|-|+-|+|+|||.+++.
T Consensus 116 ~~---~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LV---P---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GC---T---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hc---C---CHHHHHHHHHHHCCCCcEEEEE
Confidence 54 2 4678999999999999999985
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4.7e-06 Score=82.43 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=66.2
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhhc-----ccccccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNRG-----ILGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~RG-----lig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
.+|||+|||.|.++..|.+. .. +|+-.|-. ..+..+-++. +--+..|..+ ++.-+.+||+|++.+++.+
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~ 132 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDAILA 132 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHHHHHh
Confidence 58999999999999998765 33 23333443 5666666664 1112334433 2222489999999988875
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. ..-....+|-|+-|+|||||.+++.+
T Consensus 133 ~----~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 133 L----SLENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp S----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c----ChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 4 12345688999999999999999974
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.4e-05 Score=76.38 Aligned_cols=93 Identities=10% Similarity=0.168 Sum_probs=62.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc-cc-cccccCCCCCCCCCccchhhccc-ccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-LG-AFHDWCEPFSTYPRTYDLLHANH-LFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-ig-~~~~~~~~f~typrtyDl~H~~~-~~s 540 (617)
.+|||+|||.|.++..|... .+|+-.|-. ..+..+-++ |. +- +-.|..+ ++ .|.+||+|-+.. ++.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-LE-LPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-CC-CSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-cC-CCCCcCEEEEeCCchh
Confidence 68999999999999999887 244444554 555555444 21 11 1122222 22 358999999765 665
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
+. .+.-....+|-++-|+|+|||.+++
T Consensus 109 ~~---~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 109 YL---QTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp GC---CSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hc---CCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 43 3333456789999999999999998
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.4e-05 Score=79.98 Aligned_cols=94 Identities=22% Similarity=0.242 Sum_probs=62.1
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCCchhHHHHhhcccc-cccccCCCCCCCCCccchhhccccccccccCCC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAIYNRGILG-AFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGE 547 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~~~l~~~~~RGlig-~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~ 547 (617)
.+|||+|||.|.++..|.+...-|.-|-+.. ..+..+-++.-+- +..|. +.++.-+.+||+||+.+++.++
T Consensus 36 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~----- 107 (261)
T 3ege_A 36 SVIADIGAGTGGYSVALANQGLFVYAVEPSI--VMRQQAVVHPQVEWFTGYA-ENLALPDKSVDGVISILAIHHF----- 107 (261)
T ss_dssp CEEEEETCTTSHHHHHHHTTTCEEEEECSCH--HHHHSSCCCTTEEEECCCT-TSCCSCTTCBSEEEEESCGGGC-----
T ss_pred CEEEEEcCcccHHHHHHHhCCCEEEEEeCCH--HHHHHHHhccCCEEEECch-hhCCCCCCCEeEEEEcchHhhc-----
Confidence 6899999999999999987654343332221 3333222332111 22233 3344324899999999988765
Q ss_pred CCChhhHHhhhhhcccCCceEEEec
Q 039518 548 VCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 548 ~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
-+...+|-|+-|+|| ||++++.+
T Consensus 108 -~~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 108 -SHLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp -SSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred -cCHHHHHHHHHHHhC-CcEEEEEE
Confidence 246789999999999 99888753
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=72.88 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=78.4
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc--c-ccccccCCCCCCCCCcc
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI--L-GAFHDWCEPFSTYPRTY 530 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl--i-g~~~~~~~~f~typrty 530 (617)
+.+.+..+ .+|||+|||.|.++..|.....-|.. .|-. ..+..+-++ |+ + -+..|+.++++. .+|
T Consensus 29 ~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~---vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~ 101 (183)
T 2yxd_A 29 GKLNLNKD--DVVVDVGCGSGGMTVEIAKRCKFVYA---IDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEF 101 (183)
T ss_dssp HHHCCCTT--CEEEEESCCCSHHHHHHHTTSSEEEE---EECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCC
T ss_pred HHcCCCCC--CEEEEeCCCCCHHHHHHHhcCCeEEE---EeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCC
Confidence 33344444 48999999999999999874333332 2333 444444433 33 1 122344443332 689
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCCceEEEee
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~ 595 (617)
|+|.++.. ..+..++-++-|+ |||.+++.+ ..+...++.+.++...|++...+
T Consensus 102 D~i~~~~~----------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 102 NKAFIGGT----------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp SEEEECSC----------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEECCc----------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEEE
Confidence 99996655 3456889999999 999999986 66777888888888888887763
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-05 Score=83.71 Aligned_cols=104 Identities=13% Similarity=0.247 Sum_probs=63.0
Q ss_pred CCCeEEEECCCCcHHHHHhccC------------C--CcEEEeeecCCcHHHHHHHHH-----------------hCCCc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPL------------D--IQTMSFAPKDGHENQIQFALE-----------------RGIGA 276 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~------------g--v~~v~v~~iDis~~~lq~A~e-----------------rg~~~ 276 (617)
...+|+|+|||+|..+..+.+. + ..-+.+.-.|+..+.....-+ .+.+.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3578999999999888777321 1 112344444443332211100 00011
Q ss_pred EEEEe---cCCCCCCCCCCeeEEEeccccccccc--------------------------------------chHHHHHH
Q 039518 277 MISAL---STKQLPYPSSSFEMVHCSRCRVDWHA--------------------------------------NDGILLKE 315 (617)
Q Consensus 277 ~~~~~---d~~~Lpf~d~sFDlV~~s~~l~h~~~--------------------------------------d~~~~L~e 315 (617)
.+..+ ....-.||+++||+|+|+.+ +||.. |...+|+.
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 23333578999999999875 46753 33446889
Q ss_pred HHHhccCCeEEEEEeCC
Q 039518 316 VDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 316 l~RvLrPGG~Liis~p~ 332 (617)
.++.|+|||.++++...
T Consensus 211 ra~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHHHEEEEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEEec
Confidence 99999999999998753
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=7.1e-06 Score=83.02 Aligned_cols=96 Identities=13% Similarity=0.210 Sum_probs=66.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----ccc-------cccccCCC----CCCCCCccch
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----ILG-------AFHDWCEP----FSTYPRTYDL 532 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----lig-------~~~~~~~~----f~typrtyDl 532 (617)
.+|||+|||.|.++..|.+... +|+-.|-. ..+..+-++. .-. .-.|+.+. |+ +.+||+
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~fD~ 133 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA--GDGFDA 133 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC--TTCEEE
T ss_pred CEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc--CCCeEE
Confidence 5899999999999999987765 55555655 6666665431 111 11222110 22 389999
Q ss_pred hhcc-ccccccccCCC----CCChhhHHhhhhhcccCCceEEEec
Q 039518 533 LHAN-HLFSHYKNRGE----VCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 533 ~H~~-~~~s~~~~~~~----~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|++. .+|.+. .+ .-....+|-|+-|+|+|||++++..
T Consensus 134 V~~~g~~l~~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 134 VICLGNSFAHL---PDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEECTTCGGGS---CCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcChHHhhc---CccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9997 677655 22 2336689999999999999999974
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00033 Score=74.53 Aligned_cols=142 Identities=7% Similarity=-0.026 Sum_probs=82.4
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP 287 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp 287 (617)
+..+.+..+++.......+.+|++|||+||++|.|+..|++++..++.|+...+++.. .....+.+...|...+.
T Consensus 191 KL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l-----~~~~~V~~~~~d~~~~~ 265 (375)
T 4auk_A 191 KLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSL-----MDTGQVTWLREDGFKFR 265 (375)
T ss_dssp HHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHH-----HTTTCEEEECSCTTTCC
T ss_pred HHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhh-----ccCCCeEEEeCcccccc
Confidence 4444444443322223346789999999999999999999998755555433333322 12335778888887777
Q ss_pred CCCCCeeEEEecccccccccchHHHHHHHHHhccCC---eEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 288 YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPN---GYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 288 f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPG---G~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
.+.+.||+|+|-. ..++...+.-+.+.|..| +.++..-.+.......-...+..+.+..+..|+...
T Consensus 266 ~~~~~~D~vvsDm-----~~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~ 335 (375)
T 4auk_A 266 PTRSNISWMVCDM-----VEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQ 335 (375)
T ss_dssp CCSSCEEEEEECC-----SSCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCcCEEEEcC-----CCChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchh
Confidence 6778899999853 235666666666666555 443332221110000001112336666677777643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.9e-05 Score=71.19 Aligned_cols=118 Identities=9% Similarity=0.076 Sum_probs=75.8
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhh----ccc---ccccccCCCCCCCCCcc
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNR----GIL---GAFHDWCEPFSTYPRTY 530 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~R----Gli---g~~~~~~~~f~typrty 530 (617)
+.+..+ .+|||+|||.|.++..|... ..-|. -.|-. ..+..+-++ |+- -+..|..+.++..+.+|
T Consensus 21 ~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~v~---~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 95 (178)
T 3hm2_A 21 LAPKPH--ETLWDIGGGSGSIAIEWLRSTPQTTAV---CFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNP 95 (178)
T ss_dssp HCCCTT--EEEEEESTTTTHHHHHHHTTSSSEEEE---EECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCC
T ss_pred hcccCC--CeEEEeCCCCCHHHHHHHHHCCCCeEE---EEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCC
Confidence 334444 68999999999999988765 33232 23333 445555443 432 22334445555444789
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCceEEE
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~ 593 (617)
|+|.+...+.+ ..++-++-|+|+|||.+++.+. .+....+.++.+...+++..
T Consensus 96 D~i~~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 96 DVIFIGGGLTA----------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp SEEEECC-TTC----------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEE
T ss_pred CEEEECCcccH----------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEE
Confidence 99997766652 4689999999999999999753 34455666666666565543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.82 E-value=7.3e-06 Score=82.16 Aligned_cols=94 Identities=15% Similarity=0.268 Sum_probs=63.0
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhh----cc--ccc-ccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNR----GI--LGA-FHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~R----Gl--ig~-~~~~~~~f~typrtyDl~H~~~~ 538 (617)
.+|||+|||.|.++..|... ..-|.-| |.. +.+..+-++ |+ +-. ..|.. .++.-+.+||+|++..+
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDAEITSI---DISPESLEKARENTEKNGIKNVKFLQANIF-SLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTSEEEEE---ESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GCCSCTTCEEEEEEESC
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEcccc-cCCCCCCCeeEEEEech
Confidence 68999999999999988654 3333333 333 444444443 43 111 12222 23322489999999998
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+.+. . ....+|-++-|+|+|||++++.+
T Consensus 115 l~~~---~---~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHL---Q---SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGC---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhc---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 8865 2 34689999999999999999964
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.9e-05 Score=73.84 Aligned_cols=136 Identities=10% Similarity=0.035 Sum_probs=82.6
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc--ccccccccCCCCCCCCCccchhhcc-cccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEPFSTYPRTYDLLHAN-HLFSHYKN 544 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~f~typrtyDl~H~~-~~~s~~~~ 544 (617)
.+|||+|||.|.++..|..... ++.-.|.. ..+..+-++. +--+..|..+ ++.-+.+||+|.+. .++.+.
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~-- 121 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQISETDFDLIVSAGNVMGFL-- 121 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SCCCCCCEEEEEECCCCGGGS--
T ss_pred CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CCCCCCceeEEEECCcHHhhc--
Confidence 5899999999999999977654 33333443 4444444442 1112223322 22113789999987 566532
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEecCh---HHHHHHHhhhhcCCceEEEeecc--cc---CCCceeEEEEEec
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIRDEK---SLITRIRDLAPKFLWDVELHSLE--NR---EKKMESVLICRKK 612 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~d~~---~~~~~~~~~~~~~~W~~~~~~~e--~~---~~~~~~~l~~~k~ 612 (617)
..=....+|-++-|+|+|||.+++.... ...+++.++++...+++...... .. ....--++|++|+
T Consensus 122 --~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 122 --AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp --CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred --ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 1112457899999999999999996332 23566777777777776554221 11 1223446777774
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.6e-05 Score=80.21 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=64.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc--ccccccccCCCCCCCCCccchhhccccccccccC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNR 545 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~ 545 (617)
.+|||+|||.|.++..|.+...-|. -.|-. ..+..+-++. +--...|.. .++ ++.+||+|++..++.+.
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~~v~---gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~--- 130 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQSGAEVL---GTDNAATMIEKARQNYPHLHFDVADAR-NFR-VDKPLDAVFSNAMLHWV--- 130 (279)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEE---EEESCHHHHHHHHHHCTTSCEEECCTT-TCC-CSSCEEEEEEESCGGGC---
T ss_pred CEEEEecCCCCHHHHHHHhCCCeEE---EEECCHHHHHHHHhhCCCCEEEECChh-hCC-cCCCcCEEEEcchhhhC---
Confidence 5899999999999999977543332 33333 5555555552 222222332 244 37899999999888754
Q ss_pred CCCCChhhHHhhhhhcccCCceEEEe
Q 039518 546 GEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 546 ~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. +...+|-|+-|+|||||++++.
T Consensus 131 ~---d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 131 K---EPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---CHHHHHHHHHHhcCCCcEEEEE
Confidence 2 4668999999999999999996
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1e-05 Score=81.02 Aligned_cols=93 Identities=12% Similarity=0.200 Sum_probs=64.9
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHHhh----cccc----cccccCCCCCCCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIYNR----GILG----AFHDWCEPFSTYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~~R----Glig----~~~~~~~~f~typrtyDl~H~~~~ 538 (617)
.+|||+|||.|.++..|.+.+- -|.-| |-. ..+..+-++ |+-. +..|+ +.++.-+.+||+|.+.++
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGHVTGQVTGL---DFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTTCSSEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESSC
T ss_pred CEEEEeCCCCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcCC
Confidence 6899999999999999987743 33333 333 455554443 4322 22333 334422489999999998
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+.+. ....+|-++-|+|+|||++++.+
T Consensus 124 ~~~~-------~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 124 IYNI-------GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp GGGT-------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ceec-------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 8742 46789999999999999999974
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=77.92 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=63.2
Q ss_pred eeEEeccccccchhhhccCC----CeEEEEeccCCCC-chhHHHHhhc--ccccccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
.+|||+|||.|.++..|.+. .|..+ |-. ..+..+-++. +--+..|. +.++ -+.+||+|++..++.+
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~-----D~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYGVNVITGI-----DSDDDMLEKAADRLPNTNFGKADL-ATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHCTTSEEEE-----ESCHHHHHHHHHHSTTSEEEECCT-TTCC-CSSCEEEEEEESCGGG
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEE-----ECCHHHHHHHHHhCCCcEEEECCh-hhcC-ccCCcCEEEEeCchhh
Confidence 58999999999999888654 33333 333 5566665552 11122222 2344 3589999999888875
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. . +...+|-|+-|+|+|||++++..
T Consensus 108 ~---~---~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 108 V---P---DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp S---T---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred C---C---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 4 2 46789999999999999999974
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.7e-05 Score=80.48 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=81.2
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHHhh--cccc----cccccCCCCCCCC-Cccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIYNR--GILG----AFHDWCEPFSTYP-RTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~~R--Glig----~~~~~~~~f~typ-rtyDl~H~~~~~ 539 (617)
++|||+|||+|+|+..|...+. -|..| |-. ++|...+.+ .++. -+.... ....| .+||++-++..|
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga~~V~aV---Dvs~~mL~~a~r~~~rv~~~~~~ni~~l~--~~~l~~~~fD~v~~d~sf 161 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGAKLVYAV---DVGTNQLVWKLRQDDRVRSMEQYNFRYAE--PVDFTEGLPSFASIDVSF 161 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEE---CSSSSCSCHHHHTCTTEEEECSCCGGGCC--GGGCTTCCCSEEEECCSS
T ss_pred cEEEecCCCccHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHhCcccceecccCceecc--hhhCCCCCCCEEEEEeeH
Confidence 6899999999999988876653 33333 333 666654432 1111 011111 11134 459999988777
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEe---------cC-------------hHHHHHHHhhhhcCCceEEEeecc
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR---------DE-------------KSLITRIRDLAPKFLWDVELHSLE 597 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~---------d~-------------~~~~~~~~~~~~~~~W~~~~~~~e 597 (617)
.. +..+|-|+-|+|+|||.+++- +. ...++++.+++...-|.+......
T Consensus 162 ~s---------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 162 IS---------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp SC---------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred hh---------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence 62 367999999999999999885 10 146788888888899987665432
Q ss_pred --ccCCCceeEEEEE
Q 039518 598 --NREKKMESVLICR 610 (617)
Q Consensus 598 --~~~~~~~~~l~~~ 610 (617)
.|+.+....|++-
T Consensus 233 pi~g~~gn~e~l~~~ 247 (291)
T 3hp7_A 233 PIQGGHGNIEFLAHL 247 (291)
T ss_dssp SSCCGGGCCCEEEEE
T ss_pred CCCCCCcCHHHHHHh
Confidence 3444444444443
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.4e-05 Score=89.35 Aligned_cols=105 Identities=15% Similarity=0.016 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCcHHHHHhccC----CC-------------cEEEeeecCCcHHHHHHHHHh----CCC------cEEEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPL----DI-------------QTMSFAPKDGHENQIQFALER----GIG------AMISA 280 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~----gv-------------~~v~v~~iDis~~~lq~A~er----g~~------~~~~~ 280 (617)
++.+|||.+||+|.|+..+++. .. ....+.++|+++.+++.|+.+ +.. ..+..
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 4567999999999998777643 10 122688999999999999864 544 56777
Q ss_pred ecCCCCC-CCCCCeeEEEecccccccc-------------cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 281 LSTKQLP-YPSSSFEMVHCSRCRVDWH-------------ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 281 ~d~~~Lp-f~d~sFDlV~~s~~l~h~~-------------~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
+|+...+ ...+.||+|+++--+.... .....++..+.+.|+|||++++..|.
T Consensus 249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 7764433 3457899999874332211 01236899999999999999999874
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.3e-05 Score=74.09 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=63.1
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh--cccccccccCCCCCCCCCccchhhcccccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR--GILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R--Glig~~~~~~~~f~typrtyDl~H~~~~~s~~~~ 544 (617)
-.+|||+|||.|.++..| ... ++.-.|.. ..+..+-++ ++--+..|. +.++.-+.+||+|.+.+++.+.
T Consensus 37 ~~~vLdiG~G~G~~~~~l-~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~-- 108 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL-PYP----QKVGVEPSEAMLAVGRRRAPEATWVRAWG-EALPFPGESFDVVLLFTTLEFV-- 108 (211)
T ss_dssp CSEEEEETCTTCHHHHHC-CCS----EEEEECCCHHHHHHHHHHCTTSEEECCCT-TSCCSCSSCEEEEEEESCTTTC--
T ss_pred CCeEEEECCCCCHhHHhC-CCC----eEEEEeCCHHHHHHHHHhCCCcEEEEccc-ccCCCCCCcEEEEEEcChhhhc--
Confidence 358999999999999998 320 22333444 555556555 221122222 2233223799999999888754
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. ....+|-|+-|+|+|||.+++.+
T Consensus 109 -~---~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 109 -E---DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp -S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -C---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 56789999999999999999974
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.6e-05 Score=76.86 Aligned_cols=98 Identities=11% Similarity=0.216 Sum_probs=64.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc-------cccccccCCCCCCCCCccchhhcc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-------LGAFHDWCEPFSTYPRTYDLLHAN 536 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-------ig~~~~~~~~f~typrtyDl~H~~ 536 (617)
.+|||+|||.|.++.+|..... +|+-.|-. ..+..+-++ |+ +-....=.+.++.-+.+||+|-+.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 5799999999999999987754 33334443 455555543 22 111111112233224899999999
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.++.+. .+.-....+|-++-|+|||||.+++.+
T Consensus 109 ~~l~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 109 AFLTSV---PDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp SCGGGC---CCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcC---CCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 888865 332223378999999999999999974
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.78 E-value=4.1e-05 Score=73.37 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=88.7
Q ss_pred cccCccccccchhhHHHHHHH-HHHhccCCCCCeeeEEeccccccchhhhccCCC--eEEEEeccCCCC-chhHHHHhh-
Q 039518 436 IGITQEEFTTDTSFWQDQVRH-YWQLMNVNETEIRNAMDMNAYCGGFAVALNSLP--VWVMNIVPISMK-NTLSAIYNR- 510 (617)
Q Consensus 436 ~~~~~~~f~~d~~~w~~~v~~-y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~--v~vmnv~p~~~~-~~l~~~~~R- 510 (617)
+|+..+.|..+...=++.+.. -...+++..+ .+|||+|||.|.++..|.... .-| +-.|-. ..+..+-++
T Consensus 10 ~g~~d~~f~~~g~~~~~~i~~~~l~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v---~~vD~s~~~~~~a~~~~ 84 (204)
T 3e05_A 10 GIDDDEFATAKKLITKQEVRAVTLSKLRLQDD--LVMWDIGAGSASVSIEASNLMPNGRI---FALERNPQYLGFIRDNL 84 (204)
T ss_dssp CCCGGGSCCCTTTSCCHHHHHHHHHHTTCCTT--CEEEEETCTTCHHHHHHHHHCTTSEE---EEEECCHHHHHHHHHHH
T ss_pred CCCCcHHhccCCcCChHHHHHHHHHHcCCCCC--CEEEEECCCCCHHHHHHHHHCCCCEE---EEEeCCHHHHHHHHHHH
Confidence 456666777655543344422 2333445554 689999999999998886542 222 222333 444444433
Q ss_pred ---cc--cc-cccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhh
Q 039518 511 ---GI--LG-AFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDL 583 (617)
Q Consensus 511 ---Gl--ig-~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~ 583 (617)
|+ +- +..|..+.++. ..+||+|-++..+. .+..++-++-|+|+|||.+++.. ..+...++.++
T Consensus 85 ~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 154 (204)
T 3e05_A 85 KKFVARNVTLVEAFAPEGLDD-LPDPDRVFIGGSGG---------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEF 154 (204)
T ss_dssp HHHTCTTEEEEECCTTTTCTT-SCCCSEEEESCCTT---------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHH
T ss_pred HHhCCCcEEEEeCChhhhhhc-CCCCCEEEECCCCc---------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHH
Confidence 43 11 22333343332 25799987554432 45689999999999999999984 44667788888
Q ss_pred hhcCCceEEEe
Q 039518 584 APKFLWDVELH 594 (617)
Q Consensus 584 ~~~~~W~~~~~ 594 (617)
++...|++...
T Consensus 155 l~~~g~~~~~~ 165 (204)
T 3e05_A 155 LEDHGYMVEVA 165 (204)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCceeEE
Confidence 88888765544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.76 E-value=5.4e-05 Score=73.36 Aligned_cols=142 Identities=11% Similarity=0.038 Sum_probs=83.5
Q ss_pred cccCccccccchhhHHHHHHH-HHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh---
Q 039518 436 IGITQEEFTTDTSFWQDQVRH-YWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR--- 510 (617)
Q Consensus 436 ~~~~~~~f~~d~~~w~~~v~~-y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R--- 510 (617)
+|+..+.|..+...-+..+.. -...+.+..+ .+|||+|||.|.++.+|.....-| +-.|-. ..+..+-++
T Consensus 25 ~g~~d~~f~~~~~~~~~~~~~~~l~~l~~~~~--~~vLDlGcG~G~~~~~la~~~~~v---~~vD~s~~~~~~a~~~~~~ 99 (204)
T 3njr_A 25 PGRPESAFAHDGQITKSPMRALTLAALAPRRG--ELLWDIGGGSGSVSVEWCLAGGRA---ITIEPRADRIENIQKNIDT 99 (204)
T ss_dssp SCCCGGGSCCSSCCCCHHHHHHHHHHHCCCTT--CEEEEETCTTCHHHHHHHHTTCEE---EEEESCHHHHHHHHHHHHH
T ss_pred CCCCHHHhhcCCCCCcHHHHHHHHHhcCCCCC--CEEEEecCCCCHHHHHHHHcCCEE---EEEeCCHHHHHHHHHHHHH
Confidence 455566665444444444433 2233445554 579999999999998886653322 223333 444444333
Q ss_pred -ccc---cc-ccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhh
Q 039518 511 -GIL---GA-FHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLA 584 (617)
Q Consensus 511 -Gli---g~-~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~ 584 (617)
|+- -+ ..|..+.++.. ..||+|-+++. .... ++-++-|+|||||.+++.. ..+...++.+.+
T Consensus 100 ~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~----------~~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 167 (204)
T 3njr_A 100 YGLSPRMRAVQGTAPAALADL-PLPEAVFIGGG----------GSQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLH 167 (204)
T ss_dssp TTCTTTEEEEESCTTGGGTTS-CCCSEEEECSC----------CCHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCchhhhcccC-CCCCEEEECCc----------ccHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHH
Confidence 443 11 22322323222 36888764331 1345 8999999999999999974 456666777777
Q ss_pred hcCCceEEEe
Q 039518 585 PKFLWDVELH 594 (617)
Q Consensus 585 ~~~~W~~~~~ 594 (617)
+...+++...
T Consensus 168 ~~~g~~i~~i 177 (204)
T 3njr_A 168 ARHGGQLLRI 177 (204)
T ss_dssp HHHCSEEEEE
T ss_pred HhCCCcEEEE
Confidence 6666765444
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=78.33 Aligned_cols=103 Identities=16% Similarity=0.253 Sum_probs=69.5
Q ss_pred CCeEEEECCCCcHHHHHhccC---------------CCcEEEeeecCCcHHHHHHHHHhCC------CcEEEEe---cCC
Q 039518 229 VFQVLDVGCGVASFSAFLLPL---------------DIQTMSFAPKDGHENQIQFALERGI------GAMISAL---STK 284 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~---------------gv~~v~v~~iDis~~~lq~A~erg~------~~~~~~~---d~~ 284 (617)
..+|+|+||++|..+..+.+. ...-+.+...|+..+.....-+.-. +..+..+ ...
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 456999999999877766544 2334566677766666554443311 2234333 234
Q ss_pred CCCCCCCCeeEEEecccccccccc---------------------------------hHHHHHHHHHhccCCeEEEEEeC
Q 039518 285 QLPYPSSSFEMVHCSRCRVDWHAN---------------------------------DGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 285 ~Lpf~d~sFDlV~~s~~l~h~~~d---------------------------------~~~~L~el~RvLrPGG~Liis~p 331 (617)
.-.||+++||+|+|+.+ +||..+ ...+|+..++.|+|||.++++..
T Consensus 132 ~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 45689999999999875 567532 12348889999999999999865
Q ss_pred C
Q 039518 332 P 332 (617)
Q Consensus 332 ~ 332 (617)
.
T Consensus 211 g 211 (359)
T 1m6e_X 211 G 211 (359)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=97.75 E-value=2.5e-05 Score=79.19 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=64.3
Q ss_pred eeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh----c--ccccccccCCCCCCCCCccchhhccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR----G--ILGAFHDWCEPFSTYPRTYDLLHANH 537 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R----G--lig~~~~~~~~f~typrtyDl~H~~~ 537 (617)
-.+|||+|||.|.++..|.+. ..-|.-| |-. ..+..+-++ | +-=+..|.. .++ +|.+||+||+..
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~ 97 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAICHA 97 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTCEEEEE---ESCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHhcCCceEEEEcchh-hcC-cCCCeeEEEECC
Confidence 468999999999999999765 2333322 222 444444333 2 111223333 233 378999999999
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
++.+. . +...+|-|+-|+|+|||++++.+..
T Consensus 98 ~l~~~---~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHM---T---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGC---S---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcC---C---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 88754 2 3468999999999999999987543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=1.1e-05 Score=80.07 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=64.3
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----c--cccccccCCCCCCCC-Cccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----I--LGAFHDWCEPFSTYP-RTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----l--ig~~~~~~~~f~typ-rtyDl~H~~~~~s 540 (617)
..|||+|||.|.++.+|.+...= +++=.|.+ ..+..+-++. . .=+..||.+-...+| .+||.|..+.+.+
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~~--~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~ 139 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEECCCccHHHHHHHHhCCc--EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence 57999999999999999876531 22223444 6666666554 1 112234433223333 7899998766655
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+ ..++.=..+.++-|+-|+|||||.+++-
T Consensus 140 ~~-~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 140 SE-ETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp BG-GGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cc-chhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 43 1122223457889999999999999985
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.4e-05 Score=74.84 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=60.0
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh-CCCcEEEEecCCCC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER-GIGAMISALSTKQL 286 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er-g~~~~~~~~d~~~L 286 (617)
...+.+.+.+. ..++.+|||||||+|.++..|++++. ..++++|+++.+++.++++ ..++.+..+|+..+
T Consensus 18 ~i~~~iv~~~~-------~~~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~ 88 (249)
T 3ftd_A 18 GVLKKIAEELN-------IEEGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSIGDERLEVINEDASKF 88 (249)
T ss_dssp HHHHHHHHHTT-------CCTTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTC
T ss_pred HHHHHHHHhcC-------CCCcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhccCCCeEEEEcchhhC
Confidence 45555555543 23456799999999999999999852 2678889999999999887 22468888999888
Q ss_pred CCCCC--CeeEEEec
Q 039518 287 PYPSS--SFEMVHCS 299 (617)
Q Consensus 287 pf~d~--sFDlV~~s 299 (617)
++++. .| .|+++
T Consensus 89 ~~~~~~~~~-~vv~N 102 (249)
T 3ftd_A 89 PFCSLGKEL-KVVGN 102 (249)
T ss_dssp CGGGSCSSE-EEEEE
T ss_pred ChhHccCCc-EEEEE
Confidence 87642 23 45544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.8e-05 Score=74.06 Aligned_cols=138 Identities=11% Similarity=0.097 Sum_probs=84.2
Q ss_pred eeEEecccc-ccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hcc-cccc-cccCCCCCCCC-Cccchhhcccc
Q 039518 469 RNAMDMNAY-CGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGI-LGAF-HDWCEPFSTYP-RTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~-~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGl-ig~~-~~~~~~f~typ-rtyDl~H~~~~ 538 (617)
.+|||+||| .|.++.+|... .. +|+-.|-. ..+..+-+ .|+ +-++ .|+ +.+..+| .+||+|-++-.
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECCC
Confidence 589999999 99999888655 22 23333333 44444332 343 2222 232 1233334 89999998755
Q ss_pred cccccc-------------CCCCCChhhHHhhhhhcccCCceEEEe--cChHHHHHHHhhhhcCCceEEEeeccccCCCc
Q 039518 539 FSHYKN-------------RGEVCSLEDIMLEMDLIIRPQGFIIIR--DEKSLITRIRDLAPKFLWDVELHSLENREKKM 603 (617)
Q Consensus 539 ~s~~~~-------------~~~~c~~~~~l~e~dRilRP~G~~i~~--d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~ 603 (617)
|..... ......+..++-++-|+|+|||.+++- ...+...++.+.++...|++.......|. ..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~-~~ 211 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT-RW 211 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC--C
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-eE
Confidence 542100 001111367899999999999999983 45567788888888889988776544333 23
Q ss_pred eeEEEEEe
Q 039518 604 ESVLICRK 611 (617)
Q Consensus 604 ~~~l~~~k 611 (617)
-.+++.+|
T Consensus 212 ~~~l~f~~ 219 (230)
T 3evz_A 212 RHSLIFFK 219 (230)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 45666665
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.6e-05 Score=81.54 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=56.9
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCc-EEEeeecCCcHHHHHHHHHh-CCCcEEEEecCCC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQ-TMSFAPKDGHENQIQFALER-GIGAMISALSTKQ 285 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~-~v~v~~iDis~~~lq~A~er-g~~~~~~~~d~~~ 285 (617)
...+.+.+.+. ..++.+|||||||+|.++..|++++.. ...++++|+++.+++.++++ ..++.+..+|+..
T Consensus 29 ~i~~~iv~~~~-------~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 29 GVIDAIVAAIR-------PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALT 101 (279)
T ss_dssp HHHHHHHHHHC-------CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGG
T ss_pred HHHHHHHHhcC-------CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhc
Confidence 44555555542 234567999999999999999987543 11277889999999999887 3467889999988
Q ss_pred CCCCC
Q 039518 286 LPYPS 290 (617)
Q Consensus 286 Lpf~d 290 (617)
+++++
T Consensus 102 ~~~~~ 106 (279)
T 3uzu_A 102 FDFGS 106 (279)
T ss_dssp CCGGG
T ss_pred CChhH
Confidence 88654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.74 E-value=1e-05 Score=81.66 Aligned_cols=94 Identities=11% Similarity=0.153 Sum_probs=65.6
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc---cccc-cccCCCCC-CCCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI---LGAF-HDWCEPFS-TYPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl---ig~~-~~~~~~f~-typrtyDl~H~~~~ 538 (617)
..|||+|||.|.++..|.....-|.- .|-. ..+..+-++ |+ +-++ .|. +.++ ..+.+||+|.+.++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~~v~g---vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGHQVIL---CDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA-QDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEE---EESCHHHHHHHHHHHHC-CCGGGEEEEESCG-GGTGGGCSSCEEEEEEESC
T ss_pred CEEEEeCCcchHHHHHHHHCCCEEEE---EECCHHHHHHHHHHHHhcCCCcceEEEEcCH-HHhhhhcCCCceEEEECch
Confidence 57999999999999999877553333 3333 455555443 43 1122 233 2233 23489999999999
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+.+. . +...+|-|+-|+|+|||.+++.+
T Consensus 146 l~~~---~---~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 146 LEWV---A---DPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGGC---S---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhcc---c---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 8865 2 34689999999999999999974
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.74 E-value=2.8e-05 Score=75.44 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=77.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGE 547 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~ 547 (617)
.+|||+|||.|.++..|... . -.|.. ..+..+-++++--+..|. +.++.-+.+||+|.+..++.+. .
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~--~-----~vD~s~~~~~~a~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~---~- 116 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK--I-----GVEPSERMAEIARKRGVFVLKGTA-ENLPLKDESFDFALMVTTICFV---D- 116 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC--E-----EEESCHHHHHHHHHTTCEEEECBT-TBCCSCTTCEEEEEEESCGGGS---S-
T ss_pred CcEEEeCCCCCHHHHHHHHH--h-----ccCCCHHHHHHHHhcCCEEEEccc-ccCCCCCCCeeEEEEcchHhhc---c-
Confidence 58999999999999999887 1 22333 566667676542222232 2233223799999999888754 2
Q ss_pred CCChhhHHhhhhhcccCCceEEEecCh------------------------HHHHHHHhhhhcCCceEEEe
Q 039518 548 VCSLEDIMLEMDLIIRPQGFIIIRDEK------------------------SLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 548 ~c~~~~~l~e~dRilRP~G~~i~~d~~------------------------~~~~~~~~~~~~~~W~~~~~ 594 (617)
....+|-++-|+|+|||.+++.+.. -..+++++++...-++....
T Consensus 117 --~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 117 --DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 3568999999999999999997321 12466777777777776443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.74 E-value=3e-05 Score=77.42 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=65.0
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc-cccccccCCCCCCCCCccchhhccccccccccC
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI-LGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNR 545 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl-ig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~ 545 (617)
-.+|||+|||.|.++..|..... +|+-.|.. ..+..+-++.. .-+..|. +.++.-+.+||+|-+.+.+.++
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~~~~~--- 127 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSY--- 127 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHH---
T ss_pred CCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcH-HHCCCCCCCEEEEEEcchhhhc---
Confidence 35899999999999999987754 33334444 56666666643 1111122 2233213799999987755544
Q ss_pred CCCCChhhHHhhhhhcccCCceEEEec
Q 039518 546 GEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 546 ~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
... ...+|-|+-|+|+|||.+++..
T Consensus 128 ~~~--~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 128 VEN--KDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp CSC--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc--HHHHHHHHHHHcCCCeEEEEEe
Confidence 222 7789999999999999999974
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=82.44 Aligned_cols=117 Identities=11% Similarity=0.146 Sum_probs=73.1
Q ss_pred HHHHHHHhhhhhccCC-cccCCCCeEEEECCCCcHH---HHHhccCCCcEEEeeecCCcHHHHHHHHH----hC--CCcE
Q 039518 208 EYIQRLGNMMTNETGN-LRSAGVFQVLDVGCGVASF---SAFLLPLDIQTMSFAPKDGHENQIQFALE----RG--IGAM 277 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~-lr~~~g~rVLDIGCGtG~~---a~~La~~gv~~v~v~~iDis~~~lq~A~e----rg--~~~~ 277 (617)
.|.+.|.+.+...... -....+..|||||||+|.+ +...++++...+.|.++|-++.+ ..|++ ++ -.++
T Consensus 336 ~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A-~~a~~~v~~N~~~dkVt 414 (637)
T 4gqb_A 336 QYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA-VVTLENWQFEEWGSQVT 414 (637)
T ss_dssp HHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH-HHHHHHHHHHTTGGGEE
T ss_pred HHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH-HHHHHHHHhccCCCeEE
Confidence 4555565555332111 0112335699999999977 44444444445577777877644 34433 33 3488
Q ss_pred EEEecCCCCCCCCCCeeEEEecccccccc--cchHHHHHHHHHhccCCeEEE
Q 039518 278 ISALSTKQLPYPSSSFEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 278 ~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Li 327 (617)
+..++++++..| +.+|+|+|=. +-.+. +.....|....|.|||||.++
T Consensus 415 VI~gd~eev~LP-EKVDIIVSEw-MG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 415 VVSSDMREWVAP-EKADIIVSEL-LGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEESCTTTCCCS-SCEEEEECCC-CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEeCcceeccCC-cccCEEEEEc-CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 899999998776 5699999631 21211 233367888899999999875
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.4e-05 Score=73.56 Aligned_cols=137 Identities=9% Similarity=0.062 Sum_probs=78.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc-----ccccccccCCCCCCCCCccchhhcccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG-----ILGAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG-----lig~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
.+|||+|||.|.++..|.....- +|+-.|-. ..+..+-++. +--+..|..+ ++.-+.+||+|-+.++|...
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-LDFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-CCSCSSCEEEEEEESHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-CCCCCCcccEEEECcchhhh
Confidence 57999999999999988765321 22222333 4444444432 2112233332 22113799999988887643
Q ss_pred ccC-C--------CCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhh--hcCCceEEEeeccccCCCceeEEEEEe
Q 039518 543 KNR-G--------EVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLA--PKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 543 ~~~-~--------~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~--~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
... . +.-....+|-|+-|+|+|||.+++.+....- ..+.+. ....|+......+++. .-.+.+++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 197 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRHATYGSGF--HFHLYLMHK 197 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEEEEESGGG--CEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEEEEecCcc--eEEEEEEEe
Confidence 100 0 0113468999999999999999998653211 112222 4457877665443332 234556655
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.8e-05 Score=81.47 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=63.2
Q ss_pred eeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hcccc----cccccCCCCCCCC-Cccchhhcc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGILG----AFHDWCEPFSTYP-RTYDLLHAN 536 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGlig----~~~~~~~~f~typ-rtyDl~H~~ 536 (617)
-.+|||+|||.|.++..|.+. ..-| +-.|-. ..+..+-+ .|+-+ +..|.. .++ +| .+||+|.+.
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~~fD~V~~~ 192 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFGSRV---EGVTLSAAQADFGNRRARELRIDDHVRSRVCNML-DTP-FDKGAVTASWNN 192 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC-CCTTCEEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHcCCEE---EEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-cCC-CCCCCEeEEEEC
Confidence 368999999999999988765 3222 223333 45544444 34321 122332 233 34 899999998
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.++.+. ....+|-|+-|+|||||.+++.+
T Consensus 193 ~~l~~~-------~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 193 ESTMYV-------DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp SCGGGS-------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CchhhC-------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 888753 27899999999999999999863
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=97.70 E-value=2.3e-05 Score=75.79 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh----cc-------c-
Q 039518 448 SFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR----GI-------L- 513 (617)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R----Gl-------i- 513 (617)
....++++...+.+....+ .+|||+|||.|.++.+|.+. +.. +|+-.|-. ..+..+-++ |+ +
T Consensus 12 ~~~~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~ 87 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQSNA--RRVIDLGCGQGNLLKILLKDSFFE--QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ 87 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHHCTTCS--EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEE
T ss_pred CHHHHHHHHHHHHHHhcCC--CEEEEeCCCCCHHHHHHHhhCCCC--EEEEEECCHHHHHHHHHHHHHhcCCcccCcceE
Confidence 3444555544444443333 58999999999999999754 211 22223333 455555444 21 1
Q ss_pred ccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 514 g~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
=+-.|. +..+.-+.+||+|-+..++.+. ..-.+..+|-++-|+|+|||.+++.+..
T Consensus 88 ~~~~d~-~~~~~~~~~fD~v~~~~~l~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~~ 143 (217)
T 3jwh_A 88 LIQGAL-TYQDKRFHGYDAATVIEVIEHL----DLSRLGAFERVLFEFAQPKIVIVTTPNI 143 (217)
T ss_dssp EEECCT-TSCCGGGCSCSEEEEESCGGGC----CHHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred EEeCCc-ccccccCCCcCEEeeHHHHHcC----CHHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence 111222 1112112699999999988854 2223457899999999999988886543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.70 E-value=2.2e-05 Score=79.55 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=55.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcH-------HHHHHHHHh----CC--CcEEEEecCCCC-C-CCC--
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHE-------NQIQFALER----GI--GAMISALSTKQL-P-YPS-- 290 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~-------~~lq~A~er----g~--~~~~~~~d~~~L-p-f~d-- 290 (617)
++.+|||+|||+|.++..|++.+. .++++|+++ .+++.|+++ ++ .+.+..+|+..+ + +++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence 456799999999999999998864 567889999 888888754 22 377888887653 3 344
Q ss_pred CCeeEEEeccccc
Q 039518 291 SSFEMVHCSRCRV 303 (617)
Q Consensus 291 ~sFDlV~~s~~l~ 303 (617)
++||+|++.-.+.
T Consensus 160 ~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 160 GKPDIVYLDPMYP 172 (258)
T ss_dssp CCCSEEEECCCC-
T ss_pred CCccEEEECCCCC
Confidence 6899999875443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.69 E-value=3.1e-05 Score=76.52 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=66.1
Q ss_pred CeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----ccccccccCCCCCCCCCccchhhccccccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----ILGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----lig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
.=.+|||+|||.|.++.+|.....- +|+-.|-. ..+..+-++. +--+..|. +.++.-+.+||+|.+..++.+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEEchhhhh
Confidence 3468999999999999999766431 33334443 5566665553 11122222 223322389999999998876
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
. -....+|-|+-|+|+|||.+++.
T Consensus 121 ~------~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 121 I------ASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp C------SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred h------hhHHHHHHHHHHHcCCCcEEEEE
Confidence 4 23678999999999999999997
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.68 E-value=5.9e-05 Score=74.17 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=77.3
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcc------ccc-ccccCCCCCCCCCccchhhccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGI------LGA-FHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGl------ig~-~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
-.+|||+|||.|.++.+|..... -+|+-.|-. ..+..+-++.- +-+ ..|. +.++.-+.+||+|.+..++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcchh
Confidence 46899999999999998877631 122333433 44444444421 111 1222 2233223689999999888
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEecCh---------------HHHHHHHhhhhcCCceEEEee
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK---------------SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~---------------~~~~~~~~~~~~~~W~~~~~~ 595 (617)
.+. .+ =.+..+|-|+-|+|+|||.+++.+.. ...+++++++...-++.....
T Consensus 157 ~~~---~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 157 GHL---TD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp GGS---CH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred hhC---CH-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 754 21 11357899999999999999996531 135677888877778765553
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.9e-05 Score=80.43 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=62.5
Q ss_pred CeeeEEeccccccchhhhcc---CCCeEEEEeccCCCC-chhHHHHhh-----ccccc----ccccCCCCCCCC------
Q 039518 467 EIRNAMDMNAYCGGFAVALN---SLPVWVMNIVPISMK-NTLSAIYNR-----GILGA----FHDWCEPFSTYP------ 527 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~---~~~v~vmnv~p~~~~-~~l~~~~~R-----Glig~----~~~~~~~f~typ------ 527 (617)
.-.+|||+|||.|.++..|. ....-|.-| |-. ..+..+-++ |...- ..|.. .++.-.
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~ 111 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGS---DLSATMIKTAEVIKEGSPDTYKNVSFKISSSD-DFKFLGADSVDK 111 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEE---ESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT-CCGGGCTTTTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEE---eCCHHHHHHHHHHHHhccCCCCceEEEEcCHH-hCCccccccccC
Confidence 45789999999999999998 444433333 333 555555554 32221 12222 222111
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
.+||+|++..++.+ . ....+|-|+-|+|||||.+++
T Consensus 112 ~~fD~V~~~~~l~~----~---~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 112 QKIDMITAVECAHW----F---DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SCEEEEEEESCGGG----S---CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCeeEEeHhhHHHH----h---CHHHHHHHHHHhcCCCcEEEE
Confidence 69999999888763 2 678999999999999999998
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.67 E-value=4.9e-05 Score=74.25 Aligned_cols=100 Identities=14% Similarity=0.278 Sum_probs=55.3
Q ss_pred cCCCCCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhh-cccccccccCCC--CCCCCCccchhh
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEP--FSTYPRTYDLLH 534 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~--f~typrtyDl~H 534 (617)
++..+ .+|||+|||.|.++..|.+. .|.-+-+-|.--...+..+-++ ++.-+..|-.++ +..++.+||+|-
T Consensus 54 ~~~~g--~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~ 131 (210)
T 1nt2_A 54 KLRGD--ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 131 (210)
T ss_dssp CCCSS--CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCC--CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEE
Confidence 34444 47999999999998876432 2333222111000012222222 233333444442 122358999998
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
++. . . .=....+|-|+-|+|||||.+++.
T Consensus 132 ~~~--~-----~-~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 132 QDI--A-----Q-KNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp ECC--C-----S-TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Eec--c-----C-hhHHHHHHHHHHHHhCCCCEEEEE
Confidence 651 1 1 111234588999999999999996
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.3e-05 Score=76.30 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCcHHHHHhccC-------CCc----EEEeeecC---CcHHHHHHH-----------HHh----------
Q 039518 228 GVFQVLDVGCGVASFSAFLLPL-------DIQ----TMSFAPKD---GHENQIQFA-----------LER---------- 272 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~-------gv~----~v~v~~iD---is~~~lq~A-----------~er---------- 272 (617)
++.+|||||+|+|..+..+++. +.. .+.+..+| ++.+.++.| ++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4567999999999877765432 221 13444444 333444432 221
Q ss_pred ---------CCCcEEEEecCCC-CCCCC----CCeeEEEeccccccc-ccc--hHHHHHHHHHhccCCeEEEEEeCCCCC
Q 039518 273 ---------GIGAMISALSTKQ-LPYPS----SSFEMVHCSRCRVDW-HAN--DGILLKEVDRVLRPNGYFVYSAPPAYR 335 (617)
Q Consensus 273 ---------g~~~~~~~~d~~~-Lpf~d----~sFDlV~~s~~l~h~-~~d--~~~~L~el~RvLrPGG~Liis~p~~~~ 335 (617)
..++.+..+|+.+ ++..+ ..||+|+.-. +..- .++ ...++.++.++|+|||.|+.-+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa---- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFTS---- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC----
Confidence 1234566777544 44322 2799999631 1110 011 25799999999999999986221
Q ss_pred CCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 336 KDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 336 ~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
. ..+.+.+...||++...
T Consensus 215 ----a----~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 215 ----A----GFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp ----B----HHHHHHHHHHTEEEEEE
T ss_pred ----C----HHHHHHHHHCCCEEEeC
Confidence 1 23667777889997753
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.66 E-value=2e-05 Score=75.07 Aligned_cols=161 Identities=9% Similarity=0.033 Sum_probs=82.5
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC--C--eEEEEeccCCCCchhH-HHHhhcc--ccccc
Q 039518 445 TDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL--P--VWVMNIVPISMKNTLS-AIYNRGI--LGAFH 517 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~--v~vmnv~p~~~~~~l~-~~~~RGl--ig~~~ 517 (617)
.+++.+.+.+-.+... ... =.+|||+|||.|.++.+|.+. . |..+-+-|.--. ... .+-..|+ -=+..
T Consensus 12 ~~~~~~~~~~~~~l~~--~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~~~~~~~~~~ 86 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKR--MPS--GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALA-VARRNAERFGAVVDWAAA 86 (215)
T ss_dssp HHHHHHHHHHHHHHTT--CCT--TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHH
T ss_pred ccHHHHHHHHHHHhhh--cCC--CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHH-HHHHHHHHhCCceEEEEc
Confidence 3455565555444331 123 368999999999999888654 3 333322222111 111 1111121 12223
Q ss_pred ccCCCCCC---CCCccchhhcccccccccc------C----CCCCC----------hhhHHhhhhhcccCCce-EEEecC
Q 039518 518 DWCEPFST---YPRTYDLLHANHLFSHYKN------R----GEVCS----------LEDIMLEMDLIIRPQGF-IIIRDE 573 (617)
Q Consensus 518 ~~~~~f~t---yprtyDl~H~~~~~s~~~~------~----~~~c~----------~~~~l~e~dRilRP~G~-~i~~d~ 573 (617)
|+.++++. .+.+||+|-++--|..... . ..... +..++-++-|+|+|||+ +++.-.
T Consensus 87 d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 87 DGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred chHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 44443331 2378999998644431100 0 00011 16788999999999999 777544
Q ss_pred hHHHHHHHhhhh--cCCceEEEeeccccCCCceeEEEEEec
Q 039518 574 KSLITRIRDLAP--KFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 574 ~~~~~~~~~~~~--~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
......+.+++. .-.|...... ....+.+++++++|.
T Consensus 167 ~~~~~~~~~~l~~~~~gf~~~~~~--~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 167 HNQADEVARLFAPWRERGFRVRKV--KDLRGIDRVIAVTRE 205 (215)
T ss_dssp TSCHHHHHHHTGGGGGGTEECCEE--ECTTSCEEEEEEEEC
T ss_pred CccHHHHHHHHHHhhcCCceEEEE--EecCCCEEEEEEEEc
Confidence 444566667666 5556432221 122345888888874
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9.5e-05 Score=67.53 Aligned_cols=134 Identities=11% Similarity=0.125 Sum_probs=75.0
Q ss_pred CCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhhcccccccccCCC---------CCCCCC
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEP---------FSTYPR 528 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~---------f~typr 528 (617)
+..+ .+|||+|||.|.++.+|.+. .|..+-+.| .-.. ..+--+..|..+. ++ +.
T Consensus 20 ~~~~--~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~--~~~~------~~~~~~~~d~~~~~~~~~~~~~~~--~~ 87 (180)
T 1ej0_A 20 FKPG--MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP--MDPI------VGVDFLQGDFRDELVMKALLERVG--DS 87 (180)
T ss_dssp CCTT--CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC--CCCC------TTEEEEESCTTSHHHHHHHHHHHT--TC
T ss_pred CCCC--CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc--cccc------CcEEEEEcccccchhhhhhhccCC--CC
Confidence 4444 48999999999999888643 344444444 1111 1111122233221 22 37
Q ss_pred ccchhhccccccccccCCCC--CC------hhhHHhhhhhcccCCceEEEecCh-HHHHHHHhhhhcCCceEEEe--ecc
Q 039518 529 TYDLLHANHLFSHYKNRGEV--CS------LEDIMLEMDLIIRPQGFIIIRDEK-SLITRIRDLAPKFLWDVELH--SLE 597 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~--c~------~~~~l~e~dRilRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~--~~e 597 (617)
+||+|.++..+... ... -. ...+|-++-|+|+|||.+++.... .....+.+.... .|+.... ...
T Consensus 88 ~~D~i~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (180)
T 1ej0_A 88 KVQVVMSDMAPNMS---GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDS 163 (180)
T ss_dssp CEEEEEECCCCCCC---SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTT
T ss_pred ceeEEEECCCcccc---CCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCc
Confidence 89999987776522 110 00 147889999999999999996321 122333333333 3654332 222
Q ss_pred ccCCCceeEEEEEec
Q 039518 598 NREKKMESVLICRKK 612 (617)
Q Consensus 598 ~~~~~~~~~l~~~k~ 612 (617)
......|..+++++.
T Consensus 164 ~~~~~~~~~~~~~~~ 178 (180)
T 1ej0_A 164 SRARSREVYIVATGR 178 (180)
T ss_dssp SCTTCCEEEEEEEEE
T ss_pred ccccCceEEEEEccC
Confidence 233455788888763
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=1.4e-05 Score=81.47 Aligned_cols=97 Identities=7% Similarity=0.161 Sum_probs=59.9
Q ss_pred eeeEEeccccccchhhh----ccC--CCeEEEEeccCCCC-chhHHHHhh-----cccccccccC----CCCC-----CC
Q 039518 468 IRNAMDMNAYCGGFAVA----LNS--LPVWVMNIVPISMK-NTLSAIYNR-----GILGAFHDWC----EPFS-----TY 526 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~----l~~--~~v~vmnv~p~~~~-~~l~~~~~R-----Glig~~~~~~----~~f~-----ty 526 (617)
=..|||+|||.|.++.. |.. ..+-| .++=.|.. +-|..+-+| |+-.+--.|. +.++ .+
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v-~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEE-EEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCcee-eEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 35799999999986543 322 23422 22333433 455555444 3322111121 1121 02
Q ss_pred -CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 527 -PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 527 -prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+.+||+|++..++-+. . +....|-||-|+|+|||.+++.
T Consensus 132 ~~~~fD~V~~~~~l~~~---~---d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYV---K---DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCCEEEEEEESCGGGC---S---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeec---C---CHHHHHHHHHHHcCCCcEEEEE
Confidence 3899999999998865 2 3578999999999999999985
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=69.02 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=83.0
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccC---
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNR--- 545 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~--- 545 (617)
.|||+|||.|.++.+|.... +|+-.|-. ..+.. ...+--+..|..++++ +.+||+|-++..|......
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~--~~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLLCSIN--QESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTTTTBC--GGGCSEEEECCCCBTTCCCTTT
T ss_pred eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChhhhcc--cCCCCEEEECCCCccCCccccc
Confidence 89999999999999998876 55555554 33333 2233333445555443 2899999988776532100
Q ss_pred CCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEE
Q 039518 546 GEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICR 610 (617)
Q Consensus 546 ~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 610 (617)
........++-++=|.| |||.+++.. .....+++.++++...|+.......... .|++++.+
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~--~e~~~~~~ 160 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL--GETVYIIK 160 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECS--SSEEEEEE
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccC--CceEEEEE
Confidence 01112235667777777 999999975 3455678888888888987666543333 36666554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2e-05 Score=81.77 Aligned_cols=71 Identities=13% Similarity=0.051 Sum_probs=52.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----CCcEEEEecCCCCCC--C---CCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----IGAMISALSTKQLPY--P---SSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~~~~~~~~d~~~Lpf--~---d~sFDlV~ 297 (617)
.++.+|||+|||+|.++..++++.. ...+.++|.++.+++.|+++. .++.+..+|+..++. . .++||.|+
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl 103 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL 103 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEE
Confidence 4566799999999999999998743 237888999999999999863 346666666655541 1 14577776
Q ss_pred e
Q 039518 298 C 298 (617)
Q Consensus 298 ~ 298 (617)
+
T Consensus 104 ~ 104 (301)
T 1m6y_A 104 M 104 (301)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.63 E-value=8.7e-05 Score=75.17 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=45.0
Q ss_pred CccchhhccccccccccCCCC-CChhhHHhhhhhcccCCceEEEecC----------------hHHHHHHHhhhhcCCce
Q 039518 528 RTYDLLHANHLFSHYKNRGEV-CSLEDIMLEMDLIIRPQGFIIIRDE----------------KSLITRIRDLAPKFLWD 590 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~-c~~~~~l~e~dRilRP~G~~i~~d~----------------~~~~~~~~~~~~~~~W~ 590 (617)
.+||+|-+..+|... ... -....+|-|+-|+|||||++++.+. .-..+++++++..--++
T Consensus 173 ~~fD~V~~~~~l~~~---~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 249 (289)
T 2g72_A 173 LPADALVSAFCLEAV---SPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYK 249 (289)
T ss_dssp SSEEEEEEESCHHHH---CSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEE
T ss_pred CCCCEEEehhhhhhh---cCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCe
Confidence 689999999888753 221 2456899999999999999998621 01346677777666666
Q ss_pred EEEe
Q 039518 591 VELH 594 (617)
Q Consensus 591 ~~~~ 594 (617)
....
T Consensus 250 ~~~~ 253 (289)
T 2g72_A 250 VRDL 253 (289)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.2e-05 Score=79.98 Aligned_cols=94 Identities=11% Similarity=0.160 Sum_probs=61.5
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc-----c-ccccccCCCCCCCCCccchhhcc-c
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-----L-GAFHDWCEPFSTYPRTYDLLHAN-H 537 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-----i-g~~~~~~~~f~typrtyDl~H~~-~ 537 (617)
+|||+|||.|.++..|.+... +|+-.|-. ..+..+-++ |+ + -+..|..+ ++. +.+||+|.+. .
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA-FAL-DKRFGTVVISSG 159 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB-CCC-SCCEEEEEECHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc-CCc-CCCcCEEEECCc
Confidence 799999999999999988754 23333443 555555444 11 1 12223332 343 7999998854 3
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
++. + .+.-....+|-|+-|+|||||.+++..
T Consensus 160 ~~~-~---~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 160 SIN-E---LDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HHT-T---SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-c---CCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 343 2 222235689999999999999999973
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=8.6e-05 Score=85.50 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCC-----------------------------------------cEEEeeecCCcHHHH
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDI-----------------------------------------QTMSFAPKDGHENQI 266 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv-----------------------------------------~~v~v~~iDis~~~l 266 (617)
++.+|||.+||+|.++..++.... ....+.++|+++.++
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 455699999999999877664310 013688999999999
Q ss_pred HHHHHh----CCC--cEEEEecCCCCC--CCCCCeeEEEecccccc-cc--cchHHH---HHHHHHhccCCeEEEEEeC
Q 039518 267 QFALER----GIG--AMISALSTKQLP--YPSSSFEMVHCSRCRVD-WH--ANDGIL---LKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 267 q~A~er----g~~--~~~~~~d~~~Lp--f~d~sFDlV~~s~~l~h-~~--~d~~~~---L~el~RvLrPGG~Liis~p 331 (617)
+.|+++ |+. +.+..+|+.++. ..+++||+|+++--... +. .+...+ |.++.+.+.|||.+++.++
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 999876 554 688888987773 33448999999842211 11 122333 4555556668999999765
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.2e-05 Score=82.84 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=72.3
Q ss_pred eEEEECCCCcHHHHHhccCC------C--------cEEEeeecCCcHHHHHHHHHh----CCCcEE--EEecCCCCC-CC
Q 039518 231 QVLDVGCGVASFSAFLLPLD------I--------QTMSFAPKDGHENQIQFALER----GIGAMI--SALSTKQLP-YP 289 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~g------v--------~~v~v~~iDis~~~lq~A~er----g~~~~~--~~~d~~~Lp-f~ 289 (617)
+|||.+||+|.|...+++.- . ....+.+.|+++.+++.|+.+ |+...+ ..+|+...+ ++
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~ 326 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHP 326 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCT
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccc
Confidence 79999999999887764320 0 134789999999999998864 554433 556654333 45
Q ss_pred CCCeeEEEecccccc--ccc--------------------------chHHHHHHHHHhccCCeEEEEEeCCC
Q 039518 290 SSSFEMVHCSRCRVD--WHA--------------------------NDGILLKEVDRVLRPNGYFVYSAPPA 333 (617)
Q Consensus 290 d~sFDlV~~s~~l~h--~~~--------------------------d~~~~L~el~RvLrPGG~Liis~p~~ 333 (617)
+..||+|+++--+.. |.. ..-.++..+.+.|+|||++++..|..
T Consensus 327 ~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 327 DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence 678999999743221 110 01258899999999999999998743
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=97.60 E-value=7.2e-05 Score=72.24 Aligned_cols=132 Identities=11% Similarity=0.152 Sum_probs=80.2
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh-cc--------------ccccc
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR-GI--------------LGAFH 517 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R-Gl--------------ig~~~ 517 (617)
+..|...+++..+ ..|||+|||.|.++..|.++.. .|+-.|-. .-|..+-+| ++ ..-..
T Consensus 11 l~~~~~~l~~~~~--~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (203)
T 1pjz_A 11 LQQYWSSLNVVPG--ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 85 (203)
T ss_dssp HHHHHHHHCCCTT--CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHHHhcccCCC--CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccE
Confidence 3445555555554 4799999999999999987653 34444544 556666655 11 01111
Q ss_pred ccCCCCCCCC----CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceE-EE-ecCh----------HHHHHHH
Q 039518 518 DWCEPFSTYP----RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFI-II-RDEK----------SLITRIR 581 (617)
Q Consensus 518 ~~~~~f~typ----rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~-i~-~d~~----------~~~~~~~ 581 (617)
-.|.-+...| .+||+|-+..+|.+. ..-....++-||-|+|||||.+ ++ -+.. -..++++
T Consensus 86 ~~~~d~~~l~~~~~~~fD~v~~~~~l~~l----~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~ 161 (203)
T 1pjz_A 86 IWCGDFFALTARDIGHCAAFYDRAAMIAL----PADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLH 161 (203)
T ss_dssp EEEECCSSSTHHHHHSEEEEEEESCGGGS----CHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHH
T ss_pred EEECccccCCcccCCCEEEEEECcchhhC----CHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHH
Confidence 1122233333 689999887777643 1222346889999999999983 33 2211 1246788
Q ss_pred hhhhcCCceEEEee
Q 039518 582 DLAPKFLWDVELHS 595 (617)
Q Consensus 582 ~~~~~~~W~~~~~~ 595 (617)
++... .|++....
T Consensus 162 ~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 162 RVMSG-NWEVTKVG 174 (203)
T ss_dssp HTSCS-SEEEEEEE
T ss_pred HHhcC-CcEEEEec
Confidence 88877 78765543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=9.9e-05 Score=74.08 Aligned_cols=156 Identities=8% Similarity=0.003 Sum_probs=88.4
Q ss_pred cchhhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhhhccC--CCeEEEEeccCCCCchhHHHH----hhcc--ccc
Q 039518 445 TDTSFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMKNTLSAIY----NRGI--LGA 515 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~~~l~~~~----~RGl--ig~ 515 (617)
...+.|.+++-.-..++. +....-.+|||+|||.|.++..|.. ...-|.-|=+.. ..+.++- +-|+ +-+
T Consensus 57 ~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~l~~v~~ 134 (249)
T 3g89_A 57 GEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATR--KKVAFVERAIEVLGLKGARA 134 (249)
T ss_dssp CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHTCSSEEE
T ss_pred CHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCCCceEE
Confidence 344667665543333332 2223346899999999988776643 233333332222 3333332 2355 333
Q ss_pred ccccCCCCC---CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec---ChHHHHHHHhhhhcCCc
Q 039518 516 FHDWCEPFS---TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD---EKSLITRIRDLAPKFLW 589 (617)
Q Consensus 516 ~~~~~~~f~---typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d---~~~~~~~~~~~~~~~~W 589 (617)
+|.--+.++ .++.+||+|-+..+ ..+..++-++-|+|+|||.+++-. ..+.+..+++.++.+.+
T Consensus 135 ~~~d~~~~~~~~~~~~~fD~I~s~a~----------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~ 204 (249)
T 3g89_A 135 LWGRAEVLAREAGHREAYARAVARAV----------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGG 204 (249)
T ss_dssp EECCHHHHTTSTTTTTCEEEEEEESS----------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTE
T ss_pred EECcHHHhhcccccCCCceEEEECCc----------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCC
Confidence 333223333 24579999985432 245688889999999999988743 45667777777777788
Q ss_pred eEEEee-c-cccCCCceeEEEEEec
Q 039518 590 DVELHS-L-ENREKKMESVLICRKK 612 (617)
Q Consensus 590 ~~~~~~-~-e~~~~~~~~~l~~~k~ 612 (617)
+..... . -.+....-.+++.+|.
T Consensus 205 ~~~~~~~~~~p~~~~~R~l~~~~k~ 229 (249)
T 3g89_A 205 RLGEVLALQLPLSGEARHLVVLEKT 229 (249)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred eEEEEEEeeCCCCCCcEEEEEEEeC
Confidence 764432 1 1122233445566664
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.59 E-value=3.7e-05 Score=75.84 Aligned_cols=96 Identities=15% Similarity=0.247 Sum_probs=60.5
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc-cc-cccccCCCCCCCCCccchhhcccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-LG-AFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-ig-~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
-.+|||+|||.|.++..|.+... +|+-.|-. ..+..+-++ |+ +- +-.|..+ ++ .+.+||+|.+....-
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFSTI 116 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSSGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCCch
Confidence 46899999999999999987654 34444544 455444433 32 11 1223322 22 357899998642221
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+ .+.=....+|-++-|+|+|||.+|+.
T Consensus 117 ~~---~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 117 MY---FDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GG---SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hc---CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22 11123457899999999999999985
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.58 E-value=2.4e-05 Score=76.34 Aligned_cols=95 Identities=13% Similarity=0.179 Sum_probs=65.2
Q ss_pred eeeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHHhhc----ccccccccCCCCCCCCCccchhhccccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIYNRG----ILGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~~RG----lig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
-.+|||+|||.|.++..|.+.+. -|.- .|-. ..+..+-++. +--+..|..+ ++.-+.+||+|.+..++.+
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~---vD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGASYVLG---LDLSEKMLARARAAGPDTGITYERADLDK-LHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEE---EESCHHHHHHHHHTSCSSSEEEEECCGGG-CCCCTTCEEEEEEESCGGG
T ss_pred CCEEEEEcCcCCHHHHHHHHCCCCeEEE---EcCCHHHHHHHHHhcccCCceEEEcChhh-ccCCCCCceEEEEeccccc
Confidence 36899999999999999977654 2332 2333 5555555553 2112223322 3322479999999988875
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
. . ....+|-++-|+|+|||.+++..
T Consensus 120 ~---~---~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 V---E---DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp C---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c---c---hHHHHHHHHHHhcCcCcEEEEEe
Confidence 4 2 46789999999999999999974
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.58 E-value=5.1e-05 Score=73.24 Aligned_cols=115 Identities=16% Similarity=0.272 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHhcc--CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----c--cccccccc
Q 039518 449 FWQDQVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----G--ILGAFHDW 519 (617)
Q Consensus 449 ~w~~~v~~y~~~~~--~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----G--lig~~~~~ 519 (617)
.+..+.+...+.+. +.. -.+|||+|||.|.++..|....- +|+-.|-. ..+..+-++ | +--+..|.
T Consensus 20 ~~~~~~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~ 94 (227)
T 1ve3_A 20 EYRSRIETLEPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA 94 (227)
T ss_dssp HHHHHHHHHHHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT
T ss_pred HHHHHHHHHHHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECch
Confidence 34444444444332 333 35899999999999988876543 33444443 445444443 1 21222333
Q ss_pred CCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 520 CEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 520 ~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.+ ++.-+.+||+|.+..++..+ +.-....+|-++-|+|+|||.+++.+.
T Consensus 95 ~~-~~~~~~~~D~v~~~~~~~~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 95 RK-LSFEDKTFDYVIFIDSIVHF----EPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp TS-CCSCTTCEEEEEEESCGGGC----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hc-CCCCCCcEEEEEEcCchHhC----CHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 33 22113799999988874432 112345789999999999999999754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.56 E-value=5.5e-05 Score=72.02 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=71.7
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc-cccc-cccCCCCCCCCCccchhhcccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-LGAF-HDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-ig~~-~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
+|||+|||.|.++.+|.+... +|+-.|.. ..+..+-++ |+ +-++ .|. +.++.-+.+||+|.+. +.++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~--~~~~ 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL-ADFDIVADAWEGIVSI--FCHL 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT-TTBSCCTTTCSEEEEE--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh-hhcCCCcCCccEEEEE--hhcC
Confidence 899999999999999988764 44444554 555555544 33 1111 122 1222113799999873 3321
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEecC-----------------hHHHHHHHhhhhcCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-----------------KSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-----------------~~~~~~~~~~~~~~~W~~~~~ 594 (617)
..-....+|-++-|+|+|||.+++.+. .-..++++++++ -|++...
T Consensus 106 ----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 106 ----PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp ----CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred ----CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 122356889999999999999999731 123456777777 6766544
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0001 Score=84.14 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=65.0
Q ss_pred CeEEEECCCCcHHHHHhccC----C--------CcEEEeeecCCcHHHHHHHHH---hC--CCcEEEEecCCCCCCC---
Q 039518 230 FQVLDVGCGVASFSAFLLPL----D--------IQTMSFAPKDGHENQIQFALE---RG--IGAMISALSTKQLPYP--- 289 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~----g--------v~~v~v~~iDis~~~lq~A~e---rg--~~~~~~~~d~~~Lpf~--- 289 (617)
..|||||||+|.+....+.. + .....|.++|-++.++...+. ++ ..+.+..++++++.++
T Consensus 411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~ 490 (745)
T 3ua3_A 411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKD 490 (745)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccccc
Confidence 45999999999885332111 1 134578888888765543332 23 3488899999888764
Q ss_pred --CCCeeEEEecccccccc--cchHHHHHHHHHhccCCeEEE
Q 039518 290 --SSSFEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 290 --d~sFDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Li 327 (617)
.+..|+|+|-. +-.+. +-..+.|..+.|.|||||.++
T Consensus 491 ~~~ekVDIIVSEl-mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 491 RGFEQPDIIVSEL-LGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp TTCCCCSEEEECC-CBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred CCCCcccEEEEec-cccccchhccHHHHHHHHHhCCCCcEEE
Confidence 57899999743 32322 223468888899999999765
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.54 E-value=6e-05 Score=81.45 Aligned_cols=102 Identities=13% Similarity=-0.044 Sum_probs=68.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh------CC-CcEEEEecCCCC-CC-CCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER------GI-GAMISALSTKQL-PY-PSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er------g~-~~~~~~~d~~~L-pf-~d~sFDlV~~ 298 (617)
+|.+|||+|||+|..+..|++.+. .++++|+++.+++.|+++ |. ++.+..+|+.+. +. ++++||+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 467899999999999999988764 678889999999998876 44 577888887663 32 2458999998
Q ss_pred ccccc-------ccccchHHHHHHHHHhcc-CCeEEEEEeCC
Q 039518 299 SRCRV-------DWHANDGILLKEVDRVLR-PNGYFVYSAPP 332 (617)
Q Consensus 299 s~~l~-------h~~~d~~~~L~el~RvLr-PGG~Liis~p~ 332 (617)
.-... ...++..--+.++.+.|. .+..+++-.+|
T Consensus 170 DPPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP 211 (410)
T 3ll7_A 170 DPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSP 211 (410)
T ss_dssp CCEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECT
T ss_pred CCCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCC
Confidence 52111 111122223556666443 44556665543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00037 Score=72.02 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=74.4
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----------CCCcEEEEecCCCC-CCCCCCeeEEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----------GIGAMISALSTKQL-PYPSSSFEMVH 297 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----------g~~~~~~~~d~~~L-pf~d~sFDlV~ 297 (617)
.++||-||.|.|..+..+++... +..++.+|+++..++.+++. ..++.+..+|.... .-..++||+|+
T Consensus 84 pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 45699999999999999988632 23677789999999999875 23477888886443 34567899999
Q ss_pred eccccccccc----chHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.- +...... .-..+++.+.+.|+|||.++.-..
T Consensus 163 ~D-~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 163 SD-CTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp ES-CCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred Ee-CCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 53 2222111 125689999999999999998654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00014 Score=72.32 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=76.1
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHHhhcc-cc-----cccccC-CCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIYNRGI-LG-----AFHDWC-EPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~~RGl-ig-----~~~~~~-~~f~typrtyDl~H~~~~~ 539 (617)
.+|||+|||.|+|+..|..... -|.-| |-. +.|..+..+.- ++ -+...+ +.++. .-||.+-++-+|
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~~V~gv---Dis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~ 113 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAKLVYAL---DVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSF 113 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEE---CSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSS
T ss_pred CEEEEEccCCCHHHHHHHhcCCCEEEEE---cCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEh
Confidence 5799999999999998877653 33333 333 55555554321 11 111111 22322 013444444444
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEe-------------------cC---hHHHHHHHhhhhcCCceEEEeecc
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR-------------------DE---KSLITRIRDLAPKFLWDVELHSLE 597 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~-------------------d~---~~~~~~~~~~~~~~~W~~~~~~~e 597 (617)
+ .+..+|-|+-|+|+|||.+++- |. ...++++.+++...-|++...+..
T Consensus 114 ~---------~l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 114 I---------SLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp S---------CGGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred h---------hHHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence 4 2367999999999999999885 11 134567888888888887666433
Q ss_pred c--cCC-CceeEEEEEe
Q 039518 598 N--REK-KMESVLICRK 611 (617)
Q Consensus 598 ~--~~~-~~~~~l~~~k 611 (617)
. ++. ..|-++.++|
T Consensus 185 pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 185 PIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp SSCBTTTBCCEEEEEEE
T ss_pred cCCCCCCCHHHHHHHhh
Confidence 2 233 3355666665
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=73.11 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=79.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc---ccc-ccccCCCCCCC-CCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI---LGA-FHDWCEPFSTY-PRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl---ig~-~~~~~~~f~ty-prtyDl~H~~~~ 538 (617)
.+|||+|||.|.++..|....-. +|+-.|-. ..+..+-++ |+ +-+ ..|..+....+ +.+||+|-++--
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 58999999999999988766432 44444544 444443332 43 222 23333333323 389999998755
Q ss_pred ccccc--------------cCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEe
Q 039518 539 FSHYK--------------NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 539 ~s~~~--------------~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
|.... .....+.++.++-++-|+|+|||.+++--..+.+.++...++...|+....
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRI 198 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEE
Confidence 43110 001125567899999999999999999766677778888888888876543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.51 E-value=9.4e-05 Score=78.69 Aligned_cols=115 Identities=12% Similarity=0.186 Sum_probs=68.6
Q ss_pred HHHHHHHhcc--CCCCCeeeEEeccccccchhhhccCCCe-EEEEeccCCCCchh-HHHHhhcc---cccccccCCCCCC
Q 039518 453 QVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNTL-SAIYNRGI---LGAFHDWCEPFST 525 (617)
Q Consensus 453 ~v~~y~~~~~--~~~~~~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~l-~~~~~RGl---ig~~~~~~~~f~t 525 (617)
+...|.+.|- +....=.+|||+|||.|.++..|.+... -|.-|=+...-... ..+-+.|+ |-+++.=.+.++
T Consensus 47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 125 (376)
T 3r0q_C 47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS- 125 (376)
T ss_dssp HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-
T ss_pred HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-
Confidence 4445666552 2222236799999999999888876643 44444443111222 22334454 333332223333
Q ss_pred CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 526 YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+|..||+|.+..+.... ...-.+..++-+++|+|+|||.+|+.
T Consensus 126 ~~~~~D~Iv~~~~~~~l---~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 126 LPEKVDVIISEWMGYFL---LRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CSSCEEEEEECCCBTTB---TTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred cCCcceEEEEcChhhcc---cchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 45899999986543321 22234667899999999999999875
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=3.6e-05 Score=75.67 Aligned_cols=99 Identities=9% Similarity=0.047 Sum_probs=61.1
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----c-cc-cccccCC---CCCCCCCccchhhcc-c
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----I-LG-AFHDWCE---PFSTYPRTYDLLHAN-H 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----l-ig-~~~~~~~---~f~typrtyDl~H~~-~ 537 (617)
..|||+|||.|.++..|.....- +|+-.|.. ..+..+-++. . +- +..|+.+ +|+ +.+||+|.++ .
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~V~~d~~ 137 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP--DGHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC--TTCEEEEEECCC
T ss_pred CeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccC--CCceEEEEECCc
Confidence 57999999999999999775542 34445555 6666665543 1 11 1122222 343 3899999873 2
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.++ . ...+.=..+.+|-|+-|+|||||.+++-+-
T Consensus 138 ~~~-~-~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLS-E-ETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCB-G-GGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccc-h-hhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 111 1 011111223679999999999999998653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00015 Score=68.84 Aligned_cols=135 Identities=12% Similarity=0.153 Sum_probs=70.7
Q ss_pred CCCCCeeeEEeccccccchhhhccCC------CeEEEEeccCCCCchhHHHHhhcccccccccCCCCC------------
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL------PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFS------------ 524 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~------~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~------------ 524 (617)
+..+ .+|||+|||.|+++.+|.+. .|..+-+.|.... .++.-+-.|..+. .
T Consensus 20 ~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~--------~~v~~~~~d~~~~-~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKN--KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPI--------PNVYFIQGEIGKD-NMNNIKNINYIDN 88 (201)
T ss_dssp CCTT--EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCC--------TTCEEEECCTTTT-SSCCC--------
T ss_pred CCCC--CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCC--------CCceEEEccccch-hhhhhcccccccc
Confidence 3444 57999999999999888643 2455555442111 1211112232221 1
Q ss_pred ------------CCC-CccchhhccccccccccCCCC-CC-------hhhHHhhhhhcccCCceEEEecCh-HHHHHHHh
Q 039518 525 ------------TYP-RTYDLLHANHLFSHYKNRGEV-CS-------LEDIMLEMDLIIRPQGFIIIRDEK-SLITRIRD 582 (617)
Q Consensus 525 ------------typ-rtyDl~H~~~~~s~~~~~~~~-c~-------~~~~l~e~dRilRP~G~~i~~d~~-~~~~~~~~ 582 (617)
.+| .+||+|-++..+... ... -+ ...+|-++-|+|+|||.+++.... +....+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~---g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~ 165 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCI---GNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKT 165 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCC---SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHH
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCC---CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHH
Confidence 023 689999987654310 000 00 123788899999999999985211 12233344
Q ss_pred hhhcCCceEEEe-eccccCCCceeEEEEEe
Q 039518 583 LAPKFLWDVELH-SLENREKKMESVLICRK 611 (617)
Q Consensus 583 ~~~~~~W~~~~~-~~e~~~~~~~~~l~~~k 611 (617)
.++..-.++... +....+...|..+||++
T Consensus 166 ~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 166 YLKGMFQLVHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp HHHTTEEEEEECCCC-----CCEEEEEEEE
T ss_pred HHHHHHheEEEECCcccCCcCceEEEEEec
Confidence 333332233332 22223345688888876
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.49 E-value=3.6e-05 Score=81.86 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=63.7
Q ss_pred eeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh---------c-c----cc-cccccCC-------C
Q 039518 469 RNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR---------G-I----LG-AFHDWCE-------P 522 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R---------G-l----ig-~~~~~~~-------~ 522 (617)
.+|||+|||.|.++..|... .. .|+-.|-. ..+..+-++ | + +- +..|..+ +
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG---KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC---EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 57999999999988877543 22 22223333 566666655 4 1 11 2233333 3
Q ss_pred CCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 523 FSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 523 f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|+ +.+||+|+++.++.+. . +...+|-|+-|+|||||++++.+
T Consensus 162 ~~--~~~fD~V~~~~~l~~~---~---d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 162 VP--DSSVDIVISNCVCNLS---T---NKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CC--TTCEEEEEEESCGGGC---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CCCEEEEEEccchhcC---C---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 33 3799999999998865 2 25789999999999999999974
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00025 Score=79.29 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=83.2
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCC--CcEEEeeecCCcHHHHHHHHHh----CC---CcEE
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLD--IQTMSFAPKDGHENQIQFALER----GI---GAMI 278 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~g--v~~v~v~~iDis~~~lq~A~er----g~---~~~~ 278 (617)
...+.+.+++..... ..++.+|||.+||+|.|...+++.- .....+.+.|+++.+++.|+.+ |+ ++.+
T Consensus 204 ~Vv~lmv~ll~~~~~---~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I 280 (542)
T 3lkd_A 204 PVAKLMTQIAFLGRE---DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL 280 (542)
T ss_dssp HHHHHHHHHHHTTCT---TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHhcccC---CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence 455556666542111 2356789999999999877765541 1123788999999999998764 55 3567
Q ss_pred EEecCCCC--C-CCCCCeeEEEeccccc-ccc------cc---------------hHHHHHHHHHhcc-CCeEEEEEeCC
Q 039518 279 SALSTKQL--P-YPSSSFEMVHCSRCRV-DWH------AN---------------DGILLKEVDRVLR-PNGYFVYSAPP 332 (617)
Q Consensus 279 ~~~d~~~L--p-f~d~sFDlV~~s~~l~-h~~------~d---------------~~~~L~el~RvLr-PGG~Liis~p~ 332 (617)
..+|+... | .....||+|+++--+. .|. .+ .-.++..+.+.|+ |||++.+..|.
T Consensus 281 ~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp EESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred EecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 78886554 3 3567899999872211 110 00 1247999999999 99999999874
Q ss_pred C
Q 039518 333 A 333 (617)
Q Consensus 333 ~ 333 (617)
.
T Consensus 361 g 361 (542)
T 3lkd_A 361 G 361 (542)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.49 E-value=6.4e-05 Score=73.49 Aligned_cols=108 Identities=7% Similarity=0.102 Sum_probs=69.6
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc--ccccccccCCCCCCC-CCccchhhcccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG--ILGAFHDWCEPFSTY-PRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG--lig~~~~~~~~f~ty-prtyDl~H~~~~~s~~~~ 544 (617)
.+|||+|||.|.++..|..... .|+-.|-. ..+..+-++. +-=+..|+.+.++.- +.+||+|.+..
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~------- 119 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR------- 119 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-------
Confidence 5799999999999999987754 34444544 6666666662 222344565555532 47999998541
Q ss_pred CCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceE
Q 039518 545 RGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDV 591 (617)
Q Consensus 545 ~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~ 591 (617)
....+|-|+-|+|||||.++.-........+.+.+....++.
T Consensus 120 -----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 120 -----GPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp -----CCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEE
T ss_pred -----CHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence 234789999999999999994322222234444444444443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.49 E-value=6e-05 Score=73.45 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=61.3
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhh-----cccccccccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNR-----GILGAFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~R-----Glig~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
.+|||+|||.|.++.+|... ..-| +-.|-. ..+..+-++ .+--+..|..+ ++ ++.+||+|.+..++.
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEATF---TLVDMSEKMLEIAKNRFRGNLKVKYIEADYSK-YD-FEEKYDMVVSALSIH 120 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTCEE---EEEESCHHHHHHHHHHTCSCTTEEEEESCTTT-CC-CCSCEEEEEEESCGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCeE---EEEECCHHHHHHHHHhhccCCCEEEEeCchhc-cC-CCCCceEEEEeCccc
Confidence 68999999999999988654 3322 222333 455555554 11112222222 22 238999999998887
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+. ..-....+|-|+-|+|+|||.+++.+
T Consensus 121 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 121 HL----EDEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GS----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cC----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 54 11112248999999999999999975
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.47 E-value=3.7e-05 Score=78.70 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=64.3
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH---hCCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE---RGIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e---rg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.+.++.+|||+|||+|.|+.+++++.. +.++.++|+...+...+.. .+.++.....+++-..++.+.+|+|+|-.+
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmA 165 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIG 165 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCc
Confidence 345777899999999999999886532 3356677776543111111 122233223222223456788999998643
Q ss_pred cc---ccccchH--HHHHHHHHhccCC--eEEEEEe
Q 039518 302 RV---DWHANDG--ILLKEVDRVLRPN--GYFVYSA 330 (617)
Q Consensus 302 l~---h~~~d~~--~~L~el~RvLrPG--G~Liis~ 330 (617)
.. ++.+... .+|.-+.++|+|| |.|++-.
T Consensus 166 pnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 166 ESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred cCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 32 1111111 2567778999999 9999965
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00018 Score=83.31 Aligned_cols=107 Identities=12% Similarity=0.027 Sum_probs=71.7
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCC--cEEEeeecCCcHHHHHHH--HHh--------CCCc-EEEEecCCCC-CCCCCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDI--QTMSFAPKDGHENQIQFA--LER--------GIGA-MISALSTKQL-PYPSSS 292 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv--~~v~v~~iDis~~~lq~A--~er--------g~~~-~~~~~d~~~L-pf~d~s 292 (617)
.++.+|||.|||+|.++..++++.. ....+.+.|+++.+++.| +.. +... .+...++... +...+.
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567899999999999999887532 123678899999999888 322 2222 3443344332 234568
Q ss_pred eeEEEecccccc-ccc--------------------------c-hHHHHHHHHHhccCCeEEEEEeCCC
Q 039518 293 FEMVHCSRCRVD-WHA--------------------------N-DGILLKEVDRVLRPNGYFVYSAPPA 333 (617)
Q Consensus 293 FDlV~~s~~l~h-~~~--------------------------d-~~~~L~el~RvLrPGG~Liis~p~~ 333 (617)
||+|+++--... ... + ...++..+.+.|+|||++.+..|..
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 999999843321 100 0 2236788999999999999998843
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=74.64 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=73.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccc---cc-cccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILG---AF-HDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig---~~-~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|||+|||.|+|+.++....-- .|+-.|.. ..+..+-++ |+-. .+ .|.. .+.. +.+||+|.++..+
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~-~~~~-~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR-DFPG-ENIADRILMGYVV 202 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT-TCCC-CSCEEEEEECCCS
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHH-Hhcc-cCCccEEEECCch
Confidence 57999999999999887643211 22333443 444444332 5432 22 2222 2222 5799999865443
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEecC-------hHHHHHHHhhhhcCCceEEEe
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-------KSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-------~~~~~~~~~~~~~~~W~~~~~ 594 (617)
+ ...++-++-|+|+|||.+++.+. .+..+++++.++...|++...
T Consensus 203 ~----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 203 R----------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp S----------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred h----------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence 3 24678889999999999999643 356788899999999988773
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00037 Score=74.01 Aligned_cols=112 Identities=14% Similarity=0.053 Sum_probs=77.9
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-------CCcEEEEecCCCCC-CCCCC
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-------IGAMISALSTKQLP-YPSSS 292 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-------~~~~~~~~d~~~Lp-f~d~s 292 (617)
..++|.+|||+.+|.|.=+..|++.+... .+.+.|+++..++..+++ + .++.+...|...++ ...+.
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~-~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCR-NLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEE-EEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCC-cEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence 34678889999999999999998876433 688899999887766543 2 24566666665553 34578
Q ss_pred eeEEEe----ccc---ccc--------ccc-c-------hHHHHHHHHHhccCCeEEEEEeCCCCCCC
Q 039518 293 FEMVHC----SRC---RVD--------WHA-N-------DGILLKEVDRVLRPNGYFVYSAPPAYRKD 337 (617)
Q Consensus 293 FDlV~~----s~~---l~h--------~~~-d-------~~~~L~el~RvLrPGG~Liis~p~~~~~~ 337 (617)
||.|++ +.. +.. +.. + ..++|..+.++|||||+|+.++-......
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~E 291 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQ 291 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTT
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhh
Confidence 999994 321 111 110 0 13578899999999999999987655443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=8.2e-05 Score=77.08 Aligned_cols=145 Identities=11% Similarity=0.021 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhh----cccccccccCCC
Q 039518 450 WQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEP 522 (617)
Q Consensus 450 w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~ 522 (617)
|..-+..=..++++..+ ..|||+|||.|+++|.++.+ ..-|.. .|-. ..+..+-++ |+ .-..-.+..
T Consensus 107 ~~~l~~~E~~la~l~~g--~rVLDIGcG~G~~ta~~lA~~~ga~V~g---IDis~~~l~~Ar~~~~~~gl-~~v~~v~gD 180 (298)
T 3fpf_A 107 YLELLKNEAALGRFRRG--ERAVFIGGGPLPLTGILLSHVYGMRVNV---VEIEPDIAELSRKVIEGLGV-DGVNVITGD 180 (298)
T ss_dssp HHHHHHHHHHHTTCCTT--CEEEEECCCSSCHHHHHHHHTTCCEEEE---EESSHHHHHHHHHHHHHHTC-CSEEEEESC
T ss_pred HHHHHHHHHHHcCCCCc--CEEEEECCCccHHHHHHHHHccCCEEEE---EECCHHHHHHHHHHHHhcCC-CCeEEEECc
Confidence 44444431234556666 68999999999988665321 222222 2333 455554443 65 222222222
Q ss_pred CCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChHHHH---HH--HhhhhcCCceEEEeec
Q 039518 523 FSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLIT---RI--RDLAPKFLWDVELHSL 596 (617)
Q Consensus 523 f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~---~~--~~~~~~~~W~~~~~~~ 596 (617)
...+| .+||+|....+- -....++-|+-|+|||||.+++++....-. .. ....+ .|+.....+
T Consensus 181 a~~l~d~~FDvV~~~a~~---------~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~ 249 (298)
T 3fpf_A 181 ETVIDGLEFDVLMVAALA---------EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVL 249 (298)
T ss_dssp GGGGGGCCCSEEEECTTC---------SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEEC
T ss_pred hhhCCCCCcCEEEECCCc---------cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEEC
Confidence 22344 899999754331 134579999999999999999997432100 00 11222 577666554
Q ss_pred cccCCCceeEEEEEec
Q 039518 597 ENREKKMESVLICRKK 612 (617)
Q Consensus 597 e~~~~~~~~~l~~~k~ 612 (617)
-.+ ...+.|.+++|.
T Consensus 250 p~~-~v~N~vv~a~k~ 264 (298)
T 3fpf_A 250 PSG-KVNNTSVLVFKC 264 (298)
T ss_dssp CCT-TCCCEEEEEEEC
T ss_pred CCC-CcCcEEEEEEcc
Confidence 333 334678888874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=7.8e-05 Score=72.28 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=74.4
Q ss_pred eeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHh----hcccc---c-ccccCCCCCCCC----Cccch
Q 039518 469 RNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYN----RGILG---A-FHDWCEPFSTYP----RTYDL 532 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~----RGlig---~-~~~~~~~f~typ----rtyDl 532 (617)
.+|||+|||.|.++.+|... ..- |+-.|-. ..+..+-+ .|+-. + ..|..+.++..+ .+||+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGR---VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 68999999999999988764 322 2223332 34443332 25422 1 122222222221 46999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh------------HHHHHHHh----hhhcCCceEEEeec
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK------------SLITRIRD----LAPKFLWDVELHSL 596 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~ 596 (617)
|.++..... ...++-++-|+|||||.+++.+-. .....+++ +...=+|++.+...
T Consensus 137 v~~d~~~~~---------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ 207 (223)
T 3duw_A 137 IFIDADKQN---------NPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQT 207 (223)
T ss_dssp EEECSCGGG---------HHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred EEEcCCcHH---------HHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEec
Confidence 986654442 247888999999999999986321 11222333 33445676666543
Q ss_pred cccCCCceeEEEEEec
Q 039518 597 ENREKKMESVLICRKK 612 (617)
Q Consensus 597 e~~~~~~~~~l~~~k~ 612 (617)
- +..+.+.+++++|+
T Consensus 208 ~-~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 208 V-GSKGYDGFIMAVVK 222 (223)
T ss_dssp E-ETTEEEEEEEEEEC
T ss_pred c-CCCCCCeeEEEEEe
Confidence 1 22335788888764
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00011 Score=74.20 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=82.4
Q ss_pred eeEEeccccccchhhhccC-CCeEEEEeccCCCC-chhHHHHhh----cc--c-ccccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNS-LPVWVMNIVPISMK-NTLSAIYNR----GI--L-GAFHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~-~~v~vmnv~p~~~~-~~l~~~~~R----Gl--i-g~~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++.+|.. .|-. +|+-.|-. ..+.++-++ |+ + -+..|+.++++ +.+||+|-++--+
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy 186 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPY 186 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCC
Confidence 4799999999999988863 2221 23333444 445544433 43 2 22345655544 4789999987433
Q ss_pred cccc----------cCCCC---------CChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceE-EEeecccc
Q 039518 540 SHYK----------NRGEV---------CSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDV-ELHSLENR 599 (617)
Q Consensus 540 s~~~----------~~~~~---------c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~-~~~~~e~~ 599 (617)
.... .+... -.+..++-++-|+|+|||++++.......++++++++...|+. .... .
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~---d 263 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCR---D 263 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEE---C
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEe---c
Confidence 2110 00111 1235678899999999999999866555667777776666653 2222 2
Q ss_pred CCCceeEEEEEe
Q 039518 600 EKKMESVLICRK 611 (617)
Q Consensus 600 ~~~~~~~l~~~k 611 (617)
-.+.+++++++|
T Consensus 264 ~~g~~r~~~~~~ 275 (276)
T 2b3t_A 264 YGDNERVTLGRY 275 (276)
T ss_dssp TTSSEEEEEEEC
T ss_pred CCCCCcEEEEEE
Confidence 345688888875
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.42 E-value=6.3e-05 Score=75.99 Aligned_cols=71 Identities=7% Similarity=-0.009 Sum_probs=52.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---CcEEEEecCCCCCCCCC-----CeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI---GAMISALSTKQLPYPSS-----SFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~---~~~~~~~d~~~Lpf~d~-----sFDlV~~ 298 (617)
.++.+|||||||+|.++. +.. +.. ..++++|+++.+++.++++.. ++.+..+|+..+++++. ..|.|++
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~-~~~-~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvs 96 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVG-ERL-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFG 96 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHH-TTC-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEE
T ss_pred CCcCEEEEECCCCcHHHH-hhh-CCC-CeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEE
Confidence 345679999999999999 654 432 127788999999999988642 57888889888876432 3467776
Q ss_pred cc
Q 039518 299 SR 300 (617)
Q Consensus 299 s~ 300 (617)
+.
T Consensus 97 Nl 98 (252)
T 1qyr_A 97 NL 98 (252)
T ss_dssp EC
T ss_pred CC
Confidence 53
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.41 E-value=5.7e-05 Score=72.07 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=59.3
Q ss_pred eeEEeccccccchhh-hccCCCeEEEEeccCCCC-chhHHHHhh----cc-ccc-ccccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAV-ALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-LGA-FHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa-~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-ig~-~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
.+|||+|||.|.+++ .+..... +|+-.|.. ..+..+-++ |. +-+ ..|.. .++.-+.+||+|.+.+++.
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIR-KLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTT-SCCSCTTCEEEEEECSCGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchh-hCCCCCCceeEEEEcChHH
Confidence 589999999999844 4444443 23333443 444444333 31 111 22222 2332137999999887776
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+. ..-....+|-|+-|+|+|||.+++.+
T Consensus 101 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 101 HM----RKNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GS----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hC----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 12235688999999999999999974
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=97.41 E-value=7.2e-05 Score=72.85 Aligned_cols=132 Identities=12% Similarity=0.169 Sum_probs=76.4
Q ss_pred eeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHh----hcccc----cccccCCCCCCCC-----Ccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYN----RGILG----AFHDWCEPFSTYP-----RTY 530 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~----RGlig----~~~~~~~~f~typ-----rty 530 (617)
-++|||+|||.|.++..|... ..-|..| |.. ..+..+-+ .|+-. +..|..+.++..+ .+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTM---EINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEE---ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEE---eCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 368999999999999888652 3322222 332 34444333 24421 2233333344444 689
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-----hHHHHHHHhhhhcCCceEEEeec-cccCCCce
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-----KSLITRIRDLAPKFLWDVELHSL-ENREKKME 604 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~-e~~~~~~~ 604 (617)
|+|.+++....| . ....++-++ |+|||||.+++.|- .+.++.+++ .=.++...... .......+
T Consensus 136 D~V~~d~~~~~~---~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~d 205 (221)
T 3u81_A 136 DMVFLDHWKDRY---L---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTHYSSYLEYMKVVD 205 (221)
T ss_dssp SEEEECSCGGGH---H---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH---CTTEEEEEEEEEETTTTEEE
T ss_pred EEEEEcCCcccc---h---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh---CCCceEEEcccccccCCCCC
Confidence 999877665544 1 122456677 99999999999753 345554443 33566655431 12223456
Q ss_pred eEEEEEec
Q 039518 605 SVLICRKK 612 (617)
Q Consensus 605 ~~l~~~k~ 612 (617)
.+.+++++
T Consensus 206 G~~~~~~~ 213 (221)
T 3u81_A 206 GLEKAIYQ 213 (221)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEEe
Confidence 78877763
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00019 Score=70.59 Aligned_cols=126 Identities=12% Similarity=0.222 Sum_probs=75.7
Q ss_pred eeEEeccccccchhhhccC--CCeEEEEeccCCCC-chhHHHHh----hccc---c-cccccCCCCC-CCCCccchhhcc
Q 039518 469 RNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMK-NTLSAIYN----RGIL---G-AFHDWCEPFS-TYPRTYDLLHAN 536 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~-~~l~~~~~----RGli---g-~~~~~~~~f~-typrtyDl~H~~ 536 (617)
++|||+|||.|.++.+|.. ... .|+-.|-. ..+..+-+ .|+- - +..|..+..+ ..+.+||+|.++
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASISDDI---HVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CEEEEEeCchhHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 6899999999999998876 332 22333333 33433332 3431 1 2233334334 335899999855
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-----------------hHHHHHHHh----hhhcCCceEEEee
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-----------------KSLITRIRD----LAPKFLWDVELHS 595 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-----------------~~~~~~~~~----~~~~~~W~~~~~~ 595 (617)
.-.. ....++-++-|+|||||.+|+.+- ......+++ +...-+++..+..
T Consensus 150 ~~~~---------~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 220 (232)
T 3ntv_A 150 AAKA---------QSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLN 220 (232)
T ss_dssp TTSS---------SHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred CcHH---------HHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3322 345788899999999999999311 112233333 3445577766653
Q ss_pred ccccCCCceeEEEEEec
Q 039518 596 LENREKKMESVLICRKK 612 (617)
Q Consensus 596 ~e~~~~~~~~~l~~~k~ 612 (617)
. .+.+.|++|+
T Consensus 221 ~------~dG~~i~~k~ 231 (232)
T 3ntv_A 221 I------DDGLAISIKG 231 (232)
T ss_dssp S------TTCEEEEEEC
T ss_pred c------CCceEEEEEC
Confidence 2 3678888874
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00014 Score=72.32 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=65.6
Q ss_pred eeEEeccccccchhhhccCC--------CeEEEEeccCCCCchhHHHHhhcccccccccCCC--CCCCCC-ccchhhccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--------PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEP--FSTYPR-TYDLLHANH 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--------~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~--f~typr-tyDl~H~~~ 537 (617)
.+|||+|||.|..++.|.+. .|+.+-+.|.-.. ... -+...+-=+..|..+. ++..+. +||+|+.+.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~-~a~-~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-IPA-SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-CCG-GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHH-HHh-ccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 58999999999999987542 3444444443222 111 0011121123344432 222222 699998654
Q ss_pred cccccccCCCCCChhhHHhhhhh-cccCCceEEEecCh-----HHHHHHHhhhhcC--CceE
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDL-IIRPQGFIIIRDEK-----SLITRIRDLAPKF--LWDV 591 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dR-ilRP~G~~i~~d~~-----~~~~~~~~~~~~~--~W~~ 591 (617)
. + -....+|-|+-| +|+|||++++.|.. .....+.++++.. .++.
T Consensus 161 ~--~-------~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 161 A--H-------ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp S--C-------SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred c--h-------HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 3 1 146678999998 99999999997631 1123566666666 4654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=97.37 E-value=5.6e-05 Score=79.74 Aligned_cols=97 Identities=12% Similarity=0.222 Sum_probs=63.7
Q ss_pred CeeeEEeccccccchhhhccC--CC--eEEEEeccCCCCchhHHHHhh----ccc----ccccccCCCCCCCCCccchhh
Q 039518 467 EIRNAMDMNAYCGGFAVALNS--LP--VWVMNIVPISMKNTLSAIYNR----GIL----GAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~--~~--v~vmnv~p~~~~~~l~~~~~R----Gli----g~~~~~~~~f~typrtyDl~H 534 (617)
..+.|+|+|||.|.++.+|.+ .. |.++- -+..+..+-++ |+- =+-+|.-+.-..+|.+||+|.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D-----~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~ 253 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVD-----LPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVW 253 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEE-----CHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEe-----CHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEE
Confidence 468999999999999999865 23 33333 23444444443 432 122333321002568999999
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+..++..| .+. ....+|-++=|+|+|||.++|.|
T Consensus 254 ~~~vlh~~---~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 254 MSQFLDCF---SEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp EESCSTTS---CHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EechhhhC---CHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 99888766 211 23468899999999999999964
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=77.37 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=62.6
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCCch-hHHHHhhcc---cccccccCCCCCCCC-Cccchhhcccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNT-LSAIYNRGI---LGAFHDWCEPFSTYP-RTYDLLHANHLFSHY 542 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~-l~~~~~RGl---ig~~~~~~~~f~typ-rtyDl~H~~~~~s~~ 542 (617)
.+|||+|||.|.++..|.+.+. -|.-|=+...-.. ...+-+.|+ |-+++.=-+.+ .+| .+||+|.+..+....
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~~~~l 146 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMGYCL 146 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCBBTB
T ss_pred CEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccccccc
Confidence 5799999999999988877653 3443433311111 122334455 23333222333 245 899999987654433
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
...-.+..++-+++|+|+|||.+|..
T Consensus 147 ---~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 147 ---FYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp ---TBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ---cCchhHHHHHHHHHHhCCCCCEEccc
Confidence 33445678999999999999999753
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=9.4e-05 Score=74.19 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=74.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc-cccc-cccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-LGAF-HDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-ig~~-~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
.+|||+|||.|.++.++..... +|+-.|-. ..+..+-++ |+ +-++ .|+.+.++ +..||+|.++.++..
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAEL 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHHH
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcHHH
Confidence 5899999999999888765543 33333433 444444443 43 2222 13333232 368999998765542
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCceEEEee
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~ 595 (617)
+..++-++-|+|+|||++++++. ....+.+++.++..-++.....
T Consensus 197 ---------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 197 ---------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ---------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred ---------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999742 3446677777777778765543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.35 E-value=8.7e-05 Score=75.38 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=58.6
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH-------h----C---CCcEEEEecCCC-CCCCCCCee
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE-------R----G---IGAMISALSTKQ-LPYPSSSFE 294 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e-------r----g---~~~~~~~~d~~~-Lpf~d~sFD 294 (617)
.+|||+|||+|..+..+++++. .++++|+++.+.+.+++ + + .++.+..+|..+ ++....+||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence 6899999999999999999875 46777999865333322 1 1 246778887654 342234699
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCe
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNG 324 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG 324 (617)
+|++.-.+.+ . ....++++..++|++.+
T Consensus 167 vV~lDP~y~~-~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 167 VVYLDPMFPH-K-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEEECCCCCC-C-CC-----HHHHHHHHHS
T ss_pred EEEEcCCCCC-c-ccchHHHHHHHHHHHhh
Confidence 9998754432 2 23457777888888765
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00016 Score=75.89 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=82.9
Q ss_pred CCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHHh----hccc----ccccccCCCCCCCCCccchhh
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIYN----RGIL----GAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~~----RGli----g~~~~~~~~f~typrtyDl~H 534 (617)
...-.+|+|+|||.|.++.+|.+. .+-+..+ |-+..+..+-+ .|+- =+-+|..++ .|..||+|.
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~ 253 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV---ELAGPAERARRRFADAGLADRVTVAEGDFFKP---LPVTADVVL 253 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSCCEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEE---eCHHHHHHHHHHHHhcCCCCceEEEeCCCCCc---CCCCCCEEE
Confidence 345579999999999999988643 2322222 22233433332 3432 223444443 455699999
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC--h--H-----------------------HHHHHHhhhhcC
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE--K--S-----------------------LITRIRDLAPKF 587 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~--~--~-----------------------~~~~~~~~~~~~ 587 (617)
+.+++.+| .+. ....+|-++-|+|+|||+++|.|. . + ..++++++++.-
T Consensus 254 ~~~vl~~~---~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 329 (374)
T 1qzz_A 254 LSFVLLNW---SDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA 329 (374)
T ss_dssp EESCGGGS---CHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred EeccccCC---CHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHC
Confidence 99888765 110 123789999999999999998765 2 1 234566677777
Q ss_pred CceEEEeeccccCC--CceeEEEEEec
Q 039518 588 LWDVELHSLENREK--KMESVLICRKK 612 (617)
Q Consensus 588 ~W~~~~~~~e~~~~--~~~~~l~~~k~ 612 (617)
-++......-.+.. ....++.++|+
T Consensus 330 Gf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 330 GLALASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp TEEEEEEEEECCSSCSSCEEEEEEEEC
T ss_pred CCceEEEEECCCCcccCCcEEEEEEEC
Confidence 77754433221111 01267888775
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.34 E-value=4.7e-05 Score=74.88 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=61.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----ccccccccCCC-CC-CCC--Cccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----ILGAFHDWCEP-FS-TYP--RTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----lig~~~~~~~~-f~-typ--rtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++..|....- +|+-.|-. ..+..+-++- +--+..|..+. +. .++ ..||+|.+..++
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence 5699999999999998865432 33344444 5555555543 11111222221 00 011 238999988888
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+. ..-....+|-|+-|+|+|||++++.+
T Consensus 135 ~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 135 HHI----PVEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp TTS----CGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hcC----CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 754 22345689999999999999988864
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=5.1e-05 Score=76.35 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=62.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc---cccc-cccCCCCCC-CCCccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI---LGAF-HDWCEPFST-YPRTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl---ig~~-~~~~~~f~t-yprtyDl~H~~~~ 538 (617)
.+|||+|||.|.++..|...+.. +|+-.|-. ..+..+-++ |+ +-+. .|..+ ++. -+.+||+|.+..+
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG-RHMDLGKEFDVISSQFS 142 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT-SCCCCSSCEEEEEEESC
T ss_pred CeEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc-cccCCCCCcCEEEECch
Confidence 58999999999999888765431 22333333 444444443 32 2222 22222 222 2479999998877
Q ss_pred ccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 539 FSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
+.+. ..+.-....+|-|+-|+|+|||.+++...
T Consensus 143 l~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 143 FHYA--FSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp GGGG--GSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhh--cCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 6420 01122345789999999999999999743
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=4.3e-05 Score=77.41 Aligned_cols=101 Identities=8% Similarity=0.106 Sum_probs=62.1
Q ss_pred CCCCCeeeEEeccccccchhhhccC----CCeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCC-Cccch
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNS----LPVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYP-RTYDL 532 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~----~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typ-rtyDl 532 (617)
+.++ -+|||+|||.|.++.+|.. .++=|.- .|-. .-|..+-+| |+..-+.-.|.-+..+| ..||+
T Consensus 68 ~~~~--~~vLDlGcGtG~~~~~la~~~~~~~~~v~g---vD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~ 142 (261)
T 4gek_A 68 VQPG--TQVYDLGCSLGAATLSVRRNIHHDNCKIIA---IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASM 142 (261)
T ss_dssp CCTT--CEEEEETCTTTHHHHHHHHTCCSSSCEEEE---EESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEE
T ss_pred CCCC--CEEEEEeCCCCHHHHHHHHhcCCCCCEEEE---EECCHHHHHHHHHHHHhhccCceEEEeeccccccccccccc
Confidence 4555 3799999999999877753 2332332 3333 455554443 44322222233333344 56999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|-+..++... ..-....+|-||-|+|||||.+|+.|
T Consensus 143 v~~~~~l~~~----~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 143 VVLNFTLQFL----EPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp EEEESCGGGS----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeeeeeeec----CchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 9877766532 11122468999999999999999975
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00032 Score=69.85 Aligned_cols=131 Identities=8% Similarity=0.044 Sum_probs=76.6
Q ss_pred eeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh----cccc----cccccCCCCCCCC--Cccchhh
Q 039518 469 RNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR----GILG----AFHDWCEPFSTYP--RTYDLLH 534 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R----Glig----~~~~~~~~f~typ--rtyDl~H 534 (617)
++|||+|||.|.++.+|... ..-|. -.|-. ..+..+-++ |+-. +..|..+.++..+ .+||+|.
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~---~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLL---TLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEE---EEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEE---EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 78999999999999888764 22222 22332 444444433 5421 2233333333333 3899998
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh------------HHHHHHHh----hhhcCCceEEEeeccc
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK------------SLITRIRD----LAPKFLWDVELHSLEN 598 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~e~ 598 (617)
++.-.. ....++-++=|+|||||++|+.+-. .....+++ +...-+|+...... -
T Consensus 142 ~d~~~~---------~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~-~ 211 (248)
T 3tfw_A 142 IDADKP---------NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQT-V 211 (248)
T ss_dssp ECSCGG---------GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEE-C
T ss_pred ECCchH---------HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeec-C
Confidence 654332 2346788889999999999986321 12223333 34455677665421 1
Q ss_pred cCCCceeEEEEEec
Q 039518 599 REKKMESVLICRKK 612 (617)
Q Consensus 599 ~~~~~~~~l~~~k~ 612 (617)
|....+.++|++|+
T Consensus 212 g~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 212 GTKGWDGFTLAWVN 225 (248)
T ss_dssp STTCSEEEEEEEEC
T ss_pred CCCCCCeeEEEEEe
Confidence 22334788888875
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00025 Score=70.74 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=60.5
Q ss_pred CCCCCeeeEEeccccccchhhhccCC--C-eEEEEeccCCC----CchhHHHHhh----cc---cccc-cc-cC-CCCCC
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL--P-VWVMNIVPISM----KNTLSAIYNR----GI---LGAF-HD-WC-EPFST 525 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~--~-v~vmnv~p~~~----~~~l~~~~~R----Gl---ig~~-~~-~~-~~f~t 525 (617)
+..+ .+|||+|||.|.++..|.+. | .-|.-+-+... +..+..+-++ |+ +-+. .| .. +..+.
T Consensus 41 ~~~~--~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 118 (275)
T 3bkx_A 41 VKPG--EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPI 118 (275)
T ss_dssp CCTT--CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGG
T ss_pred CCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCC
Confidence 4544 58999999999999888653 2 44444444432 2345444333 33 2111 22 21 11111
Q ss_pred CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 526 YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
-+.+||+|++.+++.+. .+ ...++-.+.++++|||++++.+
T Consensus 119 ~~~~fD~v~~~~~l~~~---~~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 119 ADQHFDRVVLAHSLWYF---AS---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp TTCCCSEEEEESCGGGS---SC---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred CCCCEEEEEEccchhhC---CC---HHHHHHHHHHHhCCCCEEEEEE
Confidence 13899999999988765 22 2344555566666799999963
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.30 E-value=8.1e-05 Score=72.47 Aligned_cols=101 Identities=8% Similarity=0.117 Sum_probs=64.4
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh-----cccccccccCCCCCCCCC
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR-----GILGAFHDWCEPFSTYPR 528 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R-----Glig~~~~~~~~f~typr 528 (617)
....+.+.+..+ .+|||+|||.|.++..|..... +|+-.|-. ..+..+-++ .+--+..|..+.++ -+.
T Consensus 60 ~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~ 133 (231)
T 1vbf_A 60 IFMLDELDLHKG--QKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEK 133 (231)
T ss_dssp HHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGC
T ss_pred HHHHHhcCCCCC--CEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCC
Confidence 334444445554 4899999999999999876542 33333433 555555554 22222334444232 137
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
+||+|.++..+.+. .-|+-|+|+|||.+++...
T Consensus 134 ~fD~v~~~~~~~~~------------~~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 134 PYDRVVVWATAPTL------------LCKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CEEEEEESSBBSSC------------CHHHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHH------------HHHHHHHcCCCcEEEEEEc
Confidence 89999988887643 2478899999999999854
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=97.30 E-value=6.7e-05 Score=76.31 Aligned_cols=108 Identities=8% Similarity=0.003 Sum_probs=68.7
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccc-ccccccCCC-C--C-CCC
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGIL-GAFHDWCEP-F--S-TYP 527 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGli-g~~~~~~~~-f--~-typ 527 (617)
+....+.+++..+ ..|||+|||.|.++..|.++.- .|+-.|.. .-+..+-++--- .+-.+|... + + ..+
T Consensus 34 ~~~il~~l~l~~g--~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~ 108 (261)
T 3iv6_A 34 RENDIFLENIVPG--STVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELA 108 (261)
T ss_dssp HHHHHHTTTCCTT--CEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGT
T ss_pred HHHHHHhcCCCCc--CEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccC
Confidence 3333444445554 5799999999999999876643 23334444 556555554310 122333221 1 1 124
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+||+|-++.++.++ . .=....+|-+|-|+| |||.++++
T Consensus 109 ~~fD~Vv~~~~l~~~---~-~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 109 GHFDFVLNDRLINRF---T-TEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp TCCSEEEEESCGGGS---C-HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CCccEEEEhhhhHhC---C-HHHHHHHHHHHHHhC-cCcEEEEE
Confidence 689999999888754 1 113457899999999 99999998
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=74.93 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=84.2
Q ss_pred CCCCCeeeEEeccccccchhhhccC--CCeEEEEeccCCCCchhHHHHh----hcccc----cccccCCCCCCCCCccch
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMKNTLSAIYN----RGILG----AFHDWCEPFSTYPRTYDL 532 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~~~l~~~~~----RGlig----~~~~~~~~f~typrtyDl 532 (617)
+......+|+|+|||.|.++.+|.+ ..+-+..+ |-+..+..+-+ .|+-+ +-+|..+++ |..||+
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---p~~~D~ 238 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVL---DLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---PAGAGG 238 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---CCSCSE
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEe---cCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---CCCCcE
Confidence 4556678999999999999988864 22222222 33344444332 35421 234444444 458999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh----------------------HHHHHHHhhhhcCCce
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------------------SLITRIRDLAPKFLWD 590 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------------------~~~~~~~~~~~~~~W~ 590 (617)
|.+.+++..| .+. ....+|-++=|+|+|||+++|.|.. ...++++++++.--++
T Consensus 239 v~~~~vlh~~---~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 314 (332)
T 3i53_A 239 YVLSAVLHDW---DDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLA 314 (332)
T ss_dssp EEEESCGGGS---CHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEE
T ss_pred EEEehhhccC---CHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCE
Confidence 9999998866 211 2357999999999999999997531 1134566666666676
Q ss_pred EEEeeccccCCCceeEEEEEe
Q 039518 591 VELHSLENREKKMESVLICRK 611 (617)
Q Consensus 591 ~~~~~~e~~~~~~~~~l~~~k 611 (617)
......- ++ ..|+.++|
T Consensus 315 ~~~~~~~-~~---~~vie~r~ 331 (332)
T 3i53_A 315 VRAAHPI-SY---VSIVEMTA 331 (332)
T ss_dssp EEEEEEC-SS---SEEEEEEE
T ss_pred EEEEEEC-CC---cEEEEEee
Confidence 5444321 11 56676665
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00017 Score=69.67 Aligned_cols=122 Identities=14% Similarity=0.179 Sum_probs=72.7
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHh----hcc--ccc-ccccCCCCCC-C-CCccchhhcc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYN----RGI--LGA-FHDWCEPFST-Y-PRTYDLLHAN 536 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~----RGl--ig~-~~~~~~~f~t-y-prtyDl~H~~ 536 (617)
..|||+|||.|.|+.+|... .. +|+-.|-. ..+..+-+ .|+ +-+ ..|..+ ++. + +.+||+|.++
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEE
T ss_pred CeEEEEccCcCHHHHHHHHHCCCC---CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEE
Confidence 46999999999999888543 22 22333333 44444433 343 112 233333 321 3 3789999976
Q ss_pred ccccccc--cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCCceEEEe
Q 039518 537 HLFSHYK--NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 537 ~~~s~~~--~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
......+ .+..+=....+|-++-|+|+|||.+++. |..+..+.+.+++....|+....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeec
Confidence 3321100 0011222357899999999999999997 45566677777776666766544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=8.4e-05 Score=76.30 Aligned_cols=102 Identities=11% Similarity=0.046 Sum_probs=62.0
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc--------------ccccccccCC-----CCCCCC
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG--------------ILGAFHDWCE-----PFSTYP 527 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG--------------lig~~~~~~~-----~f~typ 527 (617)
-.+|||+|||.|.++..|...+.. +|+-.|-. ..+..+-+|- +--+..|..+ +|+.-+
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCEEEEECCCCcHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 358999999999999988765432 33334444 4555554441 1112222222 132223
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.+||+|-+..++... -.+.-....+|-|+-|+|+|||.+++...
T Consensus 113 ~~fD~V~~~~~l~~~--~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYS--FESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CCEEEEEEETCGGGG--GGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEEecchhhc--cCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 599999987665310 00112245789999999999999999843
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=4e-05 Score=78.36 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=33.4
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+.+||+|.+.+++......-+.-.+..++-++-|+|||||++|+..
T Consensus 175 ~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 175 TPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp CCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 4899999988887422000022345678999999999999999963
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00027 Score=74.03 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCCCCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhh----cccc----cccccCCCCCCCCCcc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNR----GILG----AFHDWCEPFSTYPRTY 530 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~R----Glig----~~~~~~~~f~typrty 530 (617)
+......+|+|+|||.|.++.+|.+. .+..+-+ +..+..+-++ |+-+ +-+|..+. .+|. +
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~ 257 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-----PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-A 257 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-----GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-C
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-----HHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-C
Confidence 34455689999999999999998643 2343333 3344444333 5432 23344332 2233 4
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|+|.+..++..| .+ -....+|-++-|+|+|||.++|.|
T Consensus 258 D~v~~~~vlh~~---~d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 258 DAVLFCRILYSA---NE-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp SEEEEESCGGGS---CH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CEEEEechhccC---CH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999998888766 21 124578999999999999998865
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00014 Score=70.56 Aligned_cols=126 Identities=15% Similarity=0.149 Sum_probs=73.2
Q ss_pred eeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHh----hcccc---cc-cccCCCCCCCC-----Cccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYN----RGILG---AF-HDWCEPFSTYP-----RTYD 531 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~----RGlig---~~-~~~~~~f~typ-----rtyD 531 (617)
.+|||+|||.|.++.+|... ..-|..| |.. ..+..+-+ .|+-. ++ .|..+.++..+ .+||
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITC---DVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEE---ESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEE---eCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 48999999999999988764 3322222 222 33333332 24422 11 23323322222 6899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh------------HHHHHHHh----hhhcCCceEEEee
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK------------SLITRIRD----LAPKFLWDVELHS 595 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~ 595 (617)
+|..+.-.. ....++-++=|+|||||++++.|-. .....+++ +...-+|+.....
T Consensus 143 ~v~~~~~~~---------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 213 (225)
T 3tr6_A 143 LIYIDADKA---------NTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIP 213 (225)
T ss_dssp EEEECSCGG---------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred EEEECCCHH---------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 998544322 2346788888999999999996432 11223333 3344467766653
Q ss_pred ccccCCCceeEEEEEec
Q 039518 596 LENREKKMESVLICRKK 612 (617)
Q Consensus 596 ~e~~~~~~~~~l~~~k~ 612 (617)
. .+.+++++|+
T Consensus 214 ~------~dG~~~~~k~ 224 (225)
T 3tr6_A 214 I------GDGLTLARKK 224 (225)
T ss_dssp S------TTCEEEEEEC
T ss_pred c------CCccEEEEEC
Confidence 2 3568888874
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00016 Score=75.36 Aligned_cols=95 Identities=11% Similarity=0.122 Sum_probs=59.6
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCCchhHHH----Hhhcc---cccccccCCCCCCCC-Cccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNTLSAI----YNRGI---LGAFHDWCEPFSTYP-RTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~l~~~----~~RGl---ig~~~~~~~~f~typ-rtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++..+...+. -|.-|=.. ..+..+ -+.|+ |-+++.-.+.++ .| ..||+|.+..++
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMS---SIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMG 115 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESS---THHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCB
T ss_pred CEEEEecCccHHHHHHHHHCCCCEEEEEChH---HHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCch
Confidence 4899999999999888876543 23333332 123332 23354 223332223332 35 789999987654
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
... ...-.+..+|-+++|+|+|||.+|.
T Consensus 116 ~~l---~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFL---LYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTB---STTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhc---ccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 422 2334567889999999999999983
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00032 Score=72.49 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=82.9
Q ss_pred CCCCCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHh----hcc----cccccccCCCCCCCCCcc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYN----RGI----LGAFHDWCEPFSTYPRTY 530 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~----RGl----ig~~~~~~~~f~typrty 530 (617)
++... .+|+|+|||.|.++.+|.+. .+..+-+ | ..+..+-+ .|+ --+-+|..++ +|..|
T Consensus 164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~ 234 (334)
T 2ip2_A 164 LDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-E----GSLGVARDNLSSLLAGERVSLVGGDMLQE---VPSNG 234 (334)
T ss_dssp SCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-T----TCTHHHHHHTHHHHHTTSEEEEESCTTTC---CCSSC
T ss_pred CCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-H----HHHHHHHHHHhhcCCCCcEEEecCCCCCC---CCCCC
Confidence 34445 89999999999999988643 3444444 3 23333322 232 2234455443 56789
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-------------H------------HHHHHHhhhh
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-------------S------------LITRIRDLAP 585 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-------------~------------~~~~~~~~~~ 585 (617)
|+|.+..++.+| .+ =....+|-++-|+|+|||+++|.|.. + ..++++++++
T Consensus 235 D~v~~~~vl~~~---~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 310 (334)
T 2ip2_A 235 DIYLLSRIIGDL---DE-AASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLG 310 (334)
T ss_dssp SEEEEESCGGGC---CH-HHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred CEEEEchhccCC---CH-HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHH
Confidence 999999888766 11 12247999999999999999997421 0 1344566666
Q ss_pred cCCceEEEeeccccCCCceeEEEEEe
Q 039518 586 KFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 586 ~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
.--++......-. ....++.++|
T Consensus 311 ~aGf~~~~~~~~~---~~~~~i~~~~ 333 (334)
T 2ip2_A 311 RGGFAVERIVDLP---METRMIVAAR 333 (334)
T ss_dssp HTTEEEEEEEEET---TTEEEEEEEE
T ss_pred HCCCceeEEEECC---CCCEEEEEEe
Confidence 6666654332211 2356777776
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00014 Score=73.07 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=33.1
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+||+|-+..++.+. ..+.=.+..+|-||-|+|||||++|+++
T Consensus 155 ~~fD~V~~~~~l~~i--~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 155 PLADCVLTLLAMECA--CCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp CCEEEEEEESCHHHH--CSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCEeeehHHHHHh--cCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 589999999888743 0111234578999999999999999984
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=69.77 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=71.3
Q ss_pred eeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhh-cccccccccCCC--CCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEP--FSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~--f~typrtyDl~H~~~~~s 540 (617)
.+|||+|||.|.|+..|.+. .|..+-+.|.--...+..+-++ ++--+..|..+. ++..+.+||+|.++.. .
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-~ 157 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-Q 157 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC-C
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC-C
Confidence 48999999999999988654 2333322211001122233332 232233344332 2222468999986432 1
Q ss_pred ccccCCCCCCh-hhHHhhhhhcccCCceEEEecChH----------HHHHHHhhhhcCCceEEE-eeccccCCCceeEEE
Q 039518 541 HYKNRGEVCSL-EDIMLEMDLIIRPQGFIIIRDEKS----------LITRIRDLAPKFLWDVEL-HSLENREKKMESVLI 608 (617)
Q Consensus 541 ~~~~~~~~c~~-~~~l~e~dRilRP~G~~i~~d~~~----------~~~~~~~~~~~~~W~~~~-~~~e~~~~~~~~~l~ 608 (617)
... ..++.++-|+|+|||.+++.-... +..+..++++...|+... .+.+..+ ...-+++
T Consensus 158 --------~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~v~ 228 (233)
T 2ipx_A 158 --------PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYE-RDHAVVV 228 (233)
T ss_dssp --------TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTS-SSEEEEE
T ss_pred --------ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCcc-CCcEEEE
Confidence 111 245778999999999999963221 122224566666787655 3333222 2244566
Q ss_pred EEe
Q 039518 609 CRK 611 (617)
Q Consensus 609 ~~k 611 (617)
++|
T Consensus 229 ~~~ 231 (233)
T 2ipx_A 229 GVY 231 (233)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0017 Score=63.53 Aligned_cols=119 Identities=7% Similarity=-0.074 Sum_probs=74.5
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC----CcEEEEecCCC---------------C
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI----GAMISALSTKQ---------------L 286 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~----~~~~~~~d~~~---------------L 286 (617)
++|||+||| .-+..|++.. ...++.+|.++...+.|++. |. ++.+..+++.. +
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELP--GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp SEEEEESCS--HHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CEEEEECch--HHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 359999985 5677777641 12567778999998888763 54 46777777532 2
Q ss_pred C--------C-CCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 287 P--------Y-PSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 287 p--------f-~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
+ . ..++||+|+.-. ......+..+.+.|+|||.+++.. ..+... |..++++ ++
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg------~k~~~~~~~~l~~l~~GG~Iv~DN--v~~r~~-----y~~v~~~-----~~ 169 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDG------RFRVGCALATAFSITRPVTLLFDD--YSQRRW-----QHQVEEF-----LG 169 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECS------SSHHHHHHHHHHHCSSCEEEEETT--GGGCSS-----GGGGHHH-----HC
T ss_pred HHHhhhhhccccCCCCCEEEEeC------CCchhHHHHHHHhcCCCeEEEEeC--CcCCcc-----hHHHHHH-----Hh
Confidence 2 1 237899998542 123466777889999999996621 111211 2334444 34
Q ss_pred EEEEeeeeEEEee
Q 039518 358 LIARKIQTAIWIK 370 (617)
Q Consensus 358 ~v~~~~~~~IwqK 370 (617)
.+...+..++|..
T Consensus 170 ~~~~~~~~a~f~~ 182 (202)
T 3cvo_A 170 APLMIGRLAAFQV 182 (202)
T ss_dssp CCEEETTEEEEEE
T ss_pred HHhhcCceEEEEe
Confidence 4445567777776
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=72.69 Aligned_cols=119 Identities=6% Similarity=-0.001 Sum_probs=74.7
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc-c-------------------cccccccCCCCCCCC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG-I-------------------LGAFHDWCEPFSTYP 527 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG-l-------------------ig~~~~~~~~f~typ 527 (617)
..|||+|||.|.++..|.+... +|+-.|-. .-+..+.++- + -.-..-.|.-+...|
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 4799999999999999988765 34445555 5555554431 1 011111222232222
Q ss_pred ----CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec----C--------hHHHHHHHhhhhcCCceE
Q 039518 528 ----RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD----E--------KSLITRIRDLAPKFLWDV 591 (617)
Q Consensus 528 ----rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d----~--------~~~~~~~~~~~~~~~W~~ 591 (617)
.+||+|-+.++|... .......++-||-|+|||||.+++-. . .-..++++++... .|++
T Consensus 147 ~~~~~~FD~V~~~~~l~~l----~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v 221 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAI----NPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSM 221 (252)
T ss_dssp GGCCCCEEEEEESSSTTTS----CGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred cccCCCEEEEEEhhhhhhC----CHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEE
Confidence 689999987777643 22344578999999999999996421 0 0124667777766 4877
Q ss_pred EEee
Q 039518 592 ELHS 595 (617)
Q Consensus 592 ~~~~ 595 (617)
....
T Consensus 222 ~~~~ 225 (252)
T 2gb4_A 222 QCLE 225 (252)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6554
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0002 Score=73.95 Aligned_cols=100 Identities=8% Similarity=0.087 Sum_probs=59.8
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----ccc------c-cc-cccC------CCCC-CC-C
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GIL------G-AF-HDWC------EPFS-TY-P 527 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gli------g-~~-~~~~------~~f~-ty-p 527 (617)
..|||+|||.|+....+...... +|+=.|-. .-|..+-+| |+- . .| ...+ +.++ .+ +
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 57999999999977666544432 23444544 555555554 220 0 01 1111 2111 12 3
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
.+||+|-+..++- |- -+.-....+|-||-|+|||||++|+...
T Consensus 128 ~~FD~V~~~~~lh-y~--~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIH-YS--FHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGG-GT--CSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHH-Hh--CCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8999998765542 20 0111357899999999999999999743
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00045 Score=71.19 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=61.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH---HhCCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL---ERGIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~---erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.++.+|||+||++|.|+..++++. .+..+.++|+...+..... ..+.++.....++.-..+..+.+|+|+|..+ .
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A-P 157 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG-E 157 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-C
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc-C
Confidence 477889999999999999999863 2335667777543210000 0011222222222223345678999998643 3
Q ss_pred ccccch-------HHHHHHHHHhccCC-eEEEEEe
Q 039518 304 DWHAND-------GILLKEVDRVLRPN-GYFVYSA 330 (617)
Q Consensus 304 h~~~d~-------~~~L~el~RvLrPG-G~Liis~ 330 (617)
+ .... ..+|.-+.++|+|| |.|++-.
T Consensus 158 n-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 158 S-SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 3 2111 23567778999999 9999965
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00072 Score=72.17 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-------------CcEEEEecCCCC----CCCC
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-------------GAMISALSTKQL----PYPS 290 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-------------~~~~~~~d~~~L----pf~d 290 (617)
+.++||=||.|.|..+..+++.... .++.+|+++..++.|++... .+.+...|.... +-..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~--~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPK--MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCS--EEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCc--eeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 4578999999999999999987653 67788999999999998631 145556654221 1134
Q ss_pred CCeeEEEeccccccc-ccc---------hHHHHHHHHHhccCCeEEEEEe
Q 039518 291 SSFEMVHCSRCRVDW-HAN---------DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~-~~d---------~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.||+|+.-. .... ..+ -..+++.+.+.|+|||.++.-.
T Consensus 283 ~~yDvIIvDl-~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 283 REFDYVINDL-TAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CCEEEEEEEC-CSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceeEEEECC-CCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 6799999531 1111 011 2457888999999999998754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00018 Score=75.20 Aligned_cols=99 Identities=12% Similarity=0.208 Sum_probs=62.4
Q ss_pred CCCCCeeeEEeccccccchhhhccC--CCeEEEEeccCCCCchhH--HHHhhcccc----cccccCCCCCCCCCccchhh
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMKNTLS--AIYNRGILG----AFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~~~l~--~~~~RGlig----~~~~~~~~f~typrtyDl~H 534 (617)
+......+|+|+|||.|.++.+|.+ ..+-+..+ |-+..+. .+-+.|+-+ +-+|..++ .| +||+|.
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~p-~~D~v~ 252 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLL---DRAEVVARHRLDAPDVAGRWKVVEGDFLRE---VP-HADVHV 252 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEE---ECHHHHTTCCCCCGGGTTSEEEEECCTTTC---CC-CCSEEE
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCCEEEEe---cCHHHhhcccccccCCCCCeEEEecCCCCC---CC-CCcEEE
Confidence 4556678999999999999998865 23322221 2121111 000123221 23344333 45 999999
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+.+++-+| .+ =....+|-|+=|+|||||.++|.|
T Consensus 253 ~~~vlh~~---~d-~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 253 LKRILHNW---GD-EDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp EESCGGGS---CH-HHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred EehhccCC---CH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99988766 21 112478999999999999999964
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00042 Score=71.33 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=80.8
Q ss_pred CCeeeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHHh----hcccc----cccccCCCCCCCCCccchhhc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIYN----RGILG----AFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~~----RGlig----~~~~~~~~f~typrtyDl~H~ 535 (617)
..-.+|+|+|||.|.++.+|.+. ..-+.. .|-+..+..+-+ .|+-+ +-+|..+. .+|..||+|.+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~---~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~ 238 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFG---VDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLL 238 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEE---EECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEE---EecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEE
Confidence 34578999999999999988654 222222 222233333333 24322 22333331 24566999999
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh----------H-----------------HHHHHHhhhhcCC
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------S-----------------LITRIRDLAPKFL 588 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------~-----------------~~~~~~~~~~~~~ 588 (617)
.+++..+ . .-....+|-++-|+|+|||++++.|.. . ..++++++++.--
T Consensus 239 ~~~l~~~---~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aG 314 (335)
T 2r3s_A 239 PNFLHHF---D-VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAG 314 (335)
T ss_dssp ESCGGGS---C-HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTT
T ss_pred cchhccC---C-HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCC
Confidence 8888765 1 112357899999999999999886321 0 1456667777767
Q ss_pred ceEEEeeccccCCCceeEEEEEec
Q 039518 589 WDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 589 W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
++......-.+ ...+++++++
T Consensus 315 f~~~~~~~~~~---~~~~i~~~~~ 335 (335)
T 2r3s_A 315 FSHSQLHSLPT---TQQQVIVAYK 335 (335)
T ss_dssp CSEEEEECCTT---SSSEEEEEEC
T ss_pred CCeeeEEECCC---CceeEEEecC
Confidence 76544432222 2467777654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00057 Score=71.38 Aligned_cols=139 Identities=21% Similarity=0.242 Sum_probs=83.3
Q ss_pred CCCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHHh----hccc----ccccccCCCCCCCCCccchh
Q 039518 464 NETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIYN----RGIL----GAFHDWCEPFSTYPRTYDLL 533 (617)
Q Consensus 464 ~~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~~----RGli----g~~~~~~~~f~typrtyDl~ 533 (617)
....-.+|+|+|||.|.++.+|.+. .+-+..+ |-+..+..+-+ .|+- =+-+|+.++ .|..||+|
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v 253 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVL---EMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP---LPRKADAI 253 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSSCEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEe---cCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC---CCCCccEE
Confidence 3344578999999999999888643 3322222 21333433333 3432 233455544 45569999
Q ss_pred hccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh--------H------------------HHHHHHhhhhcC
Q 039518 534 HANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK--------S------------------LITRIRDLAPKF 587 (617)
Q Consensus 534 H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~--------~------------------~~~~~~~~~~~~ 587 (617)
-+.+++.+| .+ =....+|-++-|+|+|||.++|.|.. . ..++++++++.-
T Consensus 254 ~~~~vl~~~---~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (360)
T 1tw3_A 254 ILSFVLLNW---PD-HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASA 329 (360)
T ss_dssp EEESCGGGS---CH-HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred EEcccccCC---CH-HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHC
Confidence 988888765 11 01246899999999999999987543 0 134566667777
Q ss_pred CceEEEeeccccC--CCceeEEEEEec
Q 039518 588 LWDVELHSLENRE--KKMESVLICRKK 612 (617)
Q Consensus 588 ~W~~~~~~~e~~~--~~~~~~l~~~k~ 612 (617)
-++......-.+. .....++.++|+
T Consensus 330 Gf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 330 GLVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp TEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred CCeEEEEEeCCCCcccCccEEEEEEeC
Confidence 7776544322111 011567888875
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00052 Score=72.44 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=85.7
Q ss_pred CCCCCeeeEEeccccccchhhhccCC--C--eEEEEeccCCCCchhHHHH----hhccc----ccccccCCCCCCCCCcc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL--P--VWVMNIVPISMKNTLSAIY----NRGIL----GAFHDWCEPFSTYPRTY 530 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~--~--v~vmnv~p~~~~~~l~~~~----~RGli----g~~~~~~~~f~typrty 530 (617)
++.....+|+|+|||.|.++.+|.+. . +.+.-+ +..+..+- +.|+- =+-+|..+++ |..|
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---p~~~ 269 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-----PPVAEEARELLTGRGLADRCEILPGDFFETI---PDGA 269 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC---CSSC
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-----HHHHHHHHHhhhhcCcCCceEEeccCCCCCC---CCCc
Confidence 45566799999999999999988653 2 333333 33333332 33432 2234544444 4589
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh------------------------HHHHHHHhhhhc
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK------------------------SLITRIRDLAPK 586 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~------------------------~~~~~~~~~~~~ 586 (617)
|+|-+.+++..|. + =....+|-++=|+|+|||+++|.|.. -..++++++++.
T Consensus 270 D~v~~~~vlh~~~---d-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~ 345 (369)
T 3gwz_A 270 DVYLIKHVLHDWD---D-DDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEK 345 (369)
T ss_dssp SEEEEESCGGGSC---H-HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHT
T ss_pred eEEEhhhhhccCC---H-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHH
Confidence 9999998887651 1 11235899999999999999996421 113556777777
Q ss_pred CCceEEEeeccccCCCceeEEEEEec
Q 039518 587 FLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 587 ~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
--++...... .......++.++|.
T Consensus 346 aGf~~~~~~~--~~~~~~svie~~~a 369 (369)
T 3gwz_A 346 SGLRVERSLP--CGAGPVRIVEIRRA 369 (369)
T ss_dssp TTEEEEEEEE--CSSSSEEEEEEEEC
T ss_pred CCCeEEEEEE--CCCCCcEEEEEEeC
Confidence 7787655432 11233577777763
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00022 Score=74.24 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=84.8
Q ss_pred CCCCC-eeeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHH----hhcccc----cccccCCCCCCCCCccc
Q 039518 463 VNETE-IRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIY----NRGILG----AFHDWCEPFSTYPRTYD 531 (617)
Q Consensus 463 ~~~~~-~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~----~RGlig----~~~~~~~~f~typrtyD 531 (617)
++... .++|+|+|||.|.++.+|.+. .+-+..+ |-+..+..+- +.|+-. +-+|..+.-+..|..||
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 250 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIW---DLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAAD 250 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEE---ECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEE---ECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCcc
Confidence 33444 789999999999999988643 2322222 2233333333 234422 23343332111467899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC--------h-------------------HHHHHHHhhh
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE--------K-------------------SLITRIRDLA 584 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~--------~-------------------~~~~~~~~~~ 584 (617)
+|.+.+++.+| .+ -....+|-++-|+|+|||.++|.|. . ...+++++++
T Consensus 251 ~v~~~~vlh~~---~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 326 (352)
T 3mcz_A 251 VVMLNDCLHYF---DA-REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVV 326 (352)
T ss_dssp EEEEESCGGGS---CH-HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHH
T ss_pred EEEEecccccC---CH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHH
Confidence 99999988866 11 1235799999999999999999641 0 0133456666
Q ss_pred hcCCceEEEeeccccCCCceeEEEEEec
Q 039518 585 PKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 585 ~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
+.--++..... .+...+++++|+
T Consensus 327 ~~aGf~~~~~~-----~g~~~l~~a~kp 349 (352)
T 3mcz_A 327 RDAGLAVGERS-----IGRYTLLIGQRS 349 (352)
T ss_dssp HHTTCEEEEEE-----ETTEEEEEEECC
T ss_pred HHCCCceeeec-----cCceEEEEEecC
Confidence 66666655422 234678999986
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00028 Score=68.61 Aligned_cols=133 Identities=14% Similarity=0.279 Sum_probs=70.8
Q ss_pred CCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHh----h-cccccccccCCC--CCCCCCcc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYN----R-GILGAFHDWCEP--FSTYPRTY 530 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~----R-Glig~~~~~~~~--f~typrty 530 (617)
+..+ .+|||+|||.|.++.+|.+. .|..+-+.| ..+..+.+ + ++--+..|..+. +...+.+|
T Consensus 71 ~~~~--~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~----~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (227)
T 1g8a_A 71 IKPG--KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP----RVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCTT--CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH----HHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred CCCC--CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH----HHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCc
Confidence 4444 48999999999999888643 344332222 22222211 1 222223343331 12234689
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh----------HH-HHHHHhhhhcCCceEEEe-eccc
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------SL-ITRIRDLAPKFLWDVELH-SLEN 598 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------~~-~~~~~~~~~~~~W~~~~~-~~e~ 598 (617)
|+|-++.... -....++-++-|+|+|||++++.-.. .+ -++++++... ++.... +.+.
T Consensus 145 D~v~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--f~~~~~~~~~~ 214 (227)
T 1g8a_A 145 DVIFEDVAQP--------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY--FEVIERLNLEP 214 (227)
T ss_dssp EEEEECCCST--------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT--SEEEEEEECTT
T ss_pred eEEEECCCCH--------hHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh--ceeeeEeccCc
Confidence 9988543311 11224589999999999999985111 11 2456666333 776433 2221
Q ss_pred cCCCceeEEEEEec
Q 039518 599 REKKMESVLICRKK 612 (617)
Q Consensus 599 ~~~~~~~~l~~~k~ 612 (617)
. ....-+++++|+
T Consensus 215 ~-~~~~~~~~~~~~ 227 (227)
T 1g8a_A 215 Y-EKDHALFVVRKT 227 (227)
T ss_dssp T-SSSEEEEEEECC
T ss_pred c-cCCCEEEEEEeC
Confidence 1 122446777763
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00018 Score=68.04 Aligned_cols=122 Identities=10% Similarity=0.074 Sum_probs=68.7
Q ss_pred cccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc--ccc
Q 039518 443 FTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI--LGA 515 (617)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl--ig~ 515 (617)
+...++.+.+.+-++.....-..+ .+|||+|||.|.++.++.+.+.- .|+-.|.. ..+..+-+ .|+ +-+
T Consensus 22 ~rp~~~~~~~~l~~~l~~~~~~~~--~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~ 97 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTARRDLTG--LAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATL 97 (189)
T ss_dssp C---CHHHHHHHHHHHHHHSCCTT--CEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEE
T ss_pred CccCcHHHHHHHHHHHHhccCCCC--CEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEE
Confidence 445556666666555442211223 57999999999999866655431 12222333 33333332 243 111
Q ss_pred -ccccCCCCCCC-CCccchhhccccccccccCCCCCChhhHHhhhhh--cccCCceEEEecC
Q 039518 516 -FHDWCEPFSTY-PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDL--IIRPQGFIIIRDE 573 (617)
Q Consensus 516 -~~~~~~~f~ty-prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dR--ilRP~G~~i~~d~ 573 (617)
..|..+....+ +.+||+|-++..|.. ..-.+..++-++-| +|+|||.+++...
T Consensus 98 ~~~d~~~~~~~~~~~~fD~i~~~~p~~~-----~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 98 RRGAVAAVVAAGTTSPVDLVLADPPYNV-----DSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp EESCHHHHHHHCCSSCCSEEEECCCTTS-----CHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred EEccHHHHHhhccCCCccEEEECCCCCc-----chhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 12222211112 479999998766552 11235678889988 9999999999754
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00097 Score=65.84 Aligned_cols=112 Identities=12% Similarity=0.221 Sum_probs=72.0
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh----cccc----cccccCCCCCCC
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR----GILG----AFHDWCEPFSTY 526 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R----Glig----~~~~~~~~f~ty 526 (617)
..+++..+ .+|||+|||.|.++.+|... ..-|..+ |-. ..+..+-++ |+-. +..|..+.++.
T Consensus 87 ~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 160 (255)
T 3mb5_A 87 AYAGISPG--DFIVEAGVGSGALTLFLANIVGPEGRVVSY---EIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE- 160 (255)
T ss_dssp HHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC-
T ss_pred HhhCCCCC--CEEEEecCCchHHHHHHHHHhCCCeEEEEE---ecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC-
Confidence 33445555 57999999999999988654 3333333 333 455555444 5432 34566666553
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCC
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFL 588 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~ 588 (617)
.+||+|-++ --....+|-++-|+|+|||.+++.. ..+...++.+.++...
T Consensus 161 -~~~D~v~~~-----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 161 -ENVDHVILD-----------LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp -CSEEEEEEC-----------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred -CCcCEEEEC-----------CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 789998742 1233568999999999999999874 3455556666555544
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0019 Score=61.89 Aligned_cols=132 Identities=11% Similarity=0.121 Sum_probs=68.8
Q ss_pred eeEEeccccccchhhhccCCC--eEEEEeccCCCCchhHHHHhhcccccccccCCCCCC-------CC----Cccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP--VWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFST-------YP----RTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~--v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~t-------yp----rtyDl~H~ 535 (617)
.+|||+|||.|+|+.+|.++. |+-+-+.|.... .|+--+-.|..+. ++ ++ .+||+|-+
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~--------~~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEI--------AGVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCC--------TTCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEeccccccC--------CCeEEEEccccCH-HHHHHHHHHhhcccCCcceEEec
Confidence 689999999999999998764 444444443211 1222222333321 10 11 37899887
Q ss_pred ccccccc-----ccCCCCCChhhHHhhhhhcccCCceEEEec--ChHHHHHHHhhhhcCCce-EEEe-eccccCCCceeE
Q 039518 536 NHLFSHY-----KNRGEVCSLEDIMLEMDLIIRPQGFIIIRD--EKSLITRIRDLAPKFLWD-VELH-SLENREKKMESV 606 (617)
Q Consensus 536 ~~~~s~~-----~~~~~~c~~~~~l~e~dRilRP~G~~i~~d--~~~~~~~~~~~~~~~~W~-~~~~-~~e~~~~~~~~~ 606 (617)
+.-...- +.....-..+.+|-++-|+|||||.+++.- ..+ ...+...++.. ++ +.+. ..-+-+...|..
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~-~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y 175 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM-TNDFIAIWRKN-FSSYKISKPPASRGSSSEIY 175 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH-HHHHHHHHGGG-EEEEEEECC------CCEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC-HHHHHHHHHHh-cCEEEEECCCCccCCCceEE
Confidence 6533200 000000112467788899999999999852 222 23344444432 33 3332 222334456888
Q ss_pred EEEEe
Q 039518 607 LICRK 611 (617)
Q Consensus 607 l~~~k 611 (617)
+||++
T Consensus 176 ~v~~~ 180 (191)
T 3dou_A 176 IMFFG 180 (191)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88875
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00077 Score=67.09 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=75.4
Q ss_pred eeeEEeccccccchhhhccC-----CCeEEEEeccCCCCchhHHHHhhcccc---cc-cccCCCCCCC-----CCccchh
Q 039518 468 IRNAMDMNAYCGGFAVALNS-----LPVWVMNIVPISMKNTLSAIYNRGILG---AF-HDWCEPFSTY-----PRTYDLL 533 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~-----~~v~vmnv~p~~~~~~l~~~~~RGlig---~~-~~~~~~f~ty-----prtyDl~ 533 (617)
-++|||+|||.|.++.+|.. -.|..+-+-|.-....-+.+-..|+-. ++ .|-.+.++.. +.+||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 36899999999998887754 235555544443332223333445421 21 1222222322 4789999
Q ss_pred hccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh------------HHHHHHHh----hhhcCCceEEEeecc
Q 039518 534 HANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK------------SLITRIRD----LAPKFLWDVELHSLE 597 (617)
Q Consensus 534 H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~e 597 (617)
.++.-... ...++-++-|+|||||.+++.|-. .....+++ +...=++++.+...
T Consensus 141 ~~d~~~~~---------~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~- 210 (242)
T 3r3h_A 141 FIDADKTN---------YLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI- 210 (242)
T ss_dssp EEESCGGG---------HHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS-
T ss_pred EEcCChHH---------hHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc-
Confidence 86654332 235777889999999999995321 12223333 33444566665532
Q ss_pred ccCCCceeEEEEEec
Q 039518 598 NREKKMESVLICRKK 612 (617)
Q Consensus 598 ~~~~~~~~~l~~~k~ 612 (617)
.+.++|++|+
T Consensus 211 -----~dG~~~~~k~ 220 (242)
T 3r3h_A 211 -----ADGMFLVQPI 220 (242)
T ss_dssp -----SSCEEEEEEC
T ss_pred -----cCceEEEEEc
Confidence 3678888874
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00072 Score=70.97 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=60.2
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCCchhHHHHh----hcc---cccccccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNTLSAIYN----RGI---LGAFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~l~~~~~----RGl---ig~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
.+|||+|||.|.++..+...+. -|.-|-+. ..+..+-+ .|+ |-+++.=-+.++ .|..||+|-+..++.
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s---~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGARKIYAVEAS---TMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVDIIISEPMGY 127 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECS---THHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEEECCCBT
T ss_pred CEEEEcCCCccHHHHHHHhCCCCEEEEECCH---HHHHHHHHHHHHcCCCCcEEEEEcchhhCC-CCCceeEEEEeCchh
Confidence 5899999999999888866543 34444332 13333322 354 222222112222 357899999888776
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
++ . .-.+...+.++-|+|+|||.+++.
T Consensus 128 ~~---~-~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 128 ML---F-NERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TB---T-TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred cC---C-hHHHHHHHHHHHhhcCCCeEEEEe
Confidence 54 1 223557788999999999999864
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.001 Score=65.09 Aligned_cols=117 Identities=5% Similarity=0.044 Sum_probs=73.5
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc---c-ccccccCCCC-C
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI---L-GAFHDWCEPF-S 524 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl---i-g~~~~~~~~f-~ 524 (617)
.+-...+++..+ .+|||+|||.|.++.+|.+... +|+-.|-. ..+..+-++ |+ + -+..|..+.+ +
T Consensus 81 ~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 155 (248)
T 2yvl_A 81 FYIALKLNLNKE--KRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP 155 (248)
T ss_dssp HHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred HHHHHhcCCCCC--CEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence 333444445555 4899999999999988876532 34444544 555555554 33 1 1223444443 2
Q ss_pred CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCce
Q 039518 525 TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWD 590 (617)
Q Consensus 525 typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~ 590 (617)
+..||+|-++ --....++-++-|+|+|||.+++... .+.+.++.+.++.. |.
T Consensus 156 --~~~~D~v~~~-----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 156 --EGIFHAAFVD-----------VREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp --TTCBSEEEEC-----------SSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred --CCcccEEEEC-----------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 3689998732 11345788999999999999999765 45566666665554 44
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00047 Score=70.02 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=69.9
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCC--C-chhHH-HHhhccccc--ccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISM--K-NTLSA-IYNRGILGA--FHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~--~-~~l~~-~~~RGlig~--~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
..|||+|||.|+|+..|... .|.-+-+.|... + +.+.. .+..++.-+ -.|-. .++ +.+||+|-++..+.
T Consensus 76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~--~~~fD~V~sd~~~~- 151 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIH-TLP--VERTDVIMCDVGES- 151 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTT-TSC--CCCCSEEEECCCCC-
T ss_pred CEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHh-HCC--CCCCcEEEEeCccc-
Confidence 68999999999998887664 566666666311 0 10000 000011111 12222 133 58999999775422
Q ss_pred cccCCCCCChh-----hHHhhhhhcccCCc--eEEEe----cChHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEE
Q 039518 542 YKNRGEVCSLE-----DIMLEMDLIIRPQG--FIIIR----DEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICR 610 (617)
Q Consensus 542 ~~~~~~~c~~~-----~~l~e~dRilRP~G--~~i~~----d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 610 (617)
...-.++ .+|-++.|+|+||| .+++. +..++++.++.+.+.+. .+.+...-.-....|..+|+.
T Consensus 152 ----~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~ 226 (265)
T 2oxt_A 152 ----SPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSR 226 (265)
T ss_dssp ----CSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESS
T ss_pred ----CCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEec
Confidence 1110111 26788999999999 99986 34433344444433222 233333222233456666664
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00046 Score=67.10 Aligned_cols=119 Identities=9% Similarity=0.113 Sum_probs=69.7
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHh----hcc--ccc-ccccCCCCCC-C-CCccchhhcc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYN----RGI--LGA-FHDWCEPFST-Y-PRTYDLLHAN 536 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~----RGl--ig~-~~~~~~~f~t-y-prtyDl~H~~ 536 (617)
..|||+|||.|.++.+|... .. +|+-.|-. ..+..+-+ .|+ +-+ ..|..+ ++. + +.+||.|++.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE
T ss_pred ceEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE
Confidence 46999999999999988643 22 23333444 44444443 354 122 223322 221 2 3789988743
Q ss_pred ccccccc---cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCCceEE
Q 039518 537 HLFSHYK---NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFLWDVE 592 (617)
Q Consensus 537 ~~~s~~~---~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~ 592 (617)
..- .|. ....+-....+|-|+-|+|+|||.+++. |..+..+.+.+......|+..
T Consensus 116 ~~~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 116 FSD-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp SCC-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred CCC-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 211 110 0122323467899999999999999987 566666666666555556543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00022 Score=70.02 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=64.1
Q ss_pred eeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHH----Hhhcccc--c-ccccCCCCCC-C-CCccchhhc
Q 039518 468 IRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAI----YNRGILG--A-FHDWCEPFST-Y-PRTYDLLHA 535 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~----~~RGlig--~-~~~~~~~f~t-y-prtyDl~H~ 535 (617)
-..|||+|||.|.++.+|... ..-|.-| |-. ..+..+ -+.|+-. + -+|-.+.++. + +.+||+|++
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~gi---D~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGI---EVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEE---CSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEE---EecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 357999999999999888532 3323333 333 444333 3345422 1 1222222111 2 489999985
Q ss_pred ccccccccc--CCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhh
Q 039518 536 NHLFSHYKN--RGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAP 585 (617)
Q Consensus 536 ~~~~s~~~~--~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~ 585 (617)
....-..+. ...|-.-..++-|+-|+|+|||.+++. |.....+.+.+++.
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~ 164 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMS 164 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 422111100 011112235899999999999999997 55555566655543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00027 Score=67.69 Aligned_cols=100 Identities=9% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----ccc--c-cccccCCCCCCCCC
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GIL--G-AFHDWCEPFSTYPR 528 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gli--g-~~~~~~~~f~typr 528 (617)
....+.+..+ .+|||+|||.|.+++.|.....-| .-.|-. ..+..+-++ |+- - ...|..+.... ..
T Consensus 69 ~~~~l~~~~~--~~vLdiG~G~G~~~~~la~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 142 (210)
T 3lbf_A 69 MTELLELTPQ--SRVLEIGTGSGYQTAILAHLVQHV---CSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA-RA 142 (210)
T ss_dssp HHHHTTCCTT--CEEEEECCTTSHHHHHHHHHSSEE---EEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GC
T ss_pred HHHhcCCCCC--CEEEEEcCCCCHHHHHHHHhCCEE---EEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc-CC
Confidence 3444445544 589999999999999887653322 223333 444444443 432 1 22233332221 37
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
+||+|.++..+..+ . =++-|+|+|||.+++.-..
T Consensus 143 ~~D~i~~~~~~~~~---~---------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 143 PFDAIIVTAAPPEI---P---------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CEEEEEESSBCSSC---C---------THHHHTEEEEEEEEEEECS
T ss_pred CccEEEEccchhhh---h---------HHHHHhcccCcEEEEEEcC
Confidence 89999988877644 1 2678999999999997443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00087 Score=65.99 Aligned_cols=115 Identities=11% Similarity=0.183 Sum_probs=69.3
Q ss_pred HHhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh-----cc--c-ccccccCCC-CC
Q 039518 458 WQLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR-----GI--L-GAFHDWCEP-FS 524 (617)
Q Consensus 458 ~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R-----Gl--i-g~~~~~~~~-f~ 524 (617)
...+.+..+ .+|||+|||.|.++.+|... ..-|.. .|.. ..+..+-++ |. + -...|..+. ++
T Consensus 89 ~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~---~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 89 VTLLDLAPG--MRVLEAGTGSGGLTLFLARAVGEKGLVES---YEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEEE---EESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHcCCCCC--CEEEEECCCcCHHHHHHHHHhCCCCEEEE---EeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 343445555 48999999999999888654 222222 2333 445454444 52 1 122344443 33
Q ss_pred CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-HHHHHHHhhhhcCCce
Q 039518 525 TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-SLITRIRDLAPKFLWD 590 (617)
Q Consensus 525 typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-~~~~~~~~~~~~~~W~ 590 (617)
+.+||+|-++ --....+|-++-|+|+|||.+++.... +.+.++.+.++...|.
T Consensus 164 --~~~~D~v~~~-----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 164 --EAAYDGVALD-----------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp --TTCEEEEEEE-----------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred --CCCcCEEEEC-----------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 2689998742 112347899999999999999997654 3455555555555554
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00051 Score=67.29 Aligned_cols=131 Identities=9% Similarity=0.131 Sum_probs=67.6
Q ss_pred eeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhh-----cccccccccCCCC--CCCCCccchhhccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNR-----GILGAFHDWCEPF--STYPRTYDLLHANH 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~R-----Glig~~~~~~~~f--~typrtyDl~H~~~ 537 (617)
.+|||+|||.|.++..|.+. .|..+-+.| ..+..+-++ .+.-+..|..++. ..++.+||+|-.+
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~- 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAP----RIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED- 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH----HHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC-
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH----HHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe-
Confidence 47999999999999888644 233333322 223222222 1222223333211 1123689997511
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEe----cCh------H-HHHHHHhhhhcCCceEEEeeccccCCCceeE
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR----DEK------S-LITRIRDLAPKFLWDVELHSLENREKKMESV 606 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~----d~~------~-~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~ 606 (617)
+. ..=....+|-++-|+|+|||.+++. ... . .-+.++ ++....++......-+.-....-+
T Consensus 151 -~~------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~ 222 (230)
T 1fbn_A 151 -VA------QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVM 222 (230)
T ss_dssp -CC------STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEE
T ss_pred -cC------ChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEE
Confidence 11 1111256799999999999999993 111 1 124555 444444554333211111223456
Q ss_pred EEEEec
Q 039518 607 LICRKK 612 (617)
Q Consensus 607 l~~~k~ 612 (617)
++++|+
T Consensus 223 v~~~k~ 228 (230)
T 1fbn_A 223 FVGIWE 228 (230)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 777774
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00053 Score=71.86 Aligned_cols=94 Identities=10% Similarity=0.086 Sum_probs=56.9
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCCchhHHH----Hhhcc---cccccccCCCCCCCC-Cccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNTLSAI----YNRGI---LGAFHDWCEPFSTYP-RTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~l~~~----~~RGl---ig~~~~~~~~f~typ-rtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++..+...+. -|..|=... .+..+ -+.|+ |-+++.=.+.++ +| ..||+|-+..+.
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE---ILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMG 141 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESST---HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCB
T ss_pred CEEEEeeccCcHHHHHHHHcCCCEEEEEChHH---HHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCch
Confidence 4799999999999888866543 233333321 23332 23344 222322222232 45 799999987642
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEE
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFII 569 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i 569 (617)
... ...-.+..+|-++.|+|+|||.+|
T Consensus 142 ~~l---~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFL---LFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTB---TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhc---cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 211 222235578999999999999998
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.98 E-value=6.5e-05 Score=70.08 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=59.0
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccc----ccccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGIL----GAFHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGli----g~~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++.+|...+.. +|+-.|-. ..+..+-+ .|+- =+..|+.+.++..+..||+|.++..|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 48999999999999988766531 23333443 44444332 2332 11233433333345679999987665
Q ss_pred cccccCCCCCChhhHHhhhh--hcccCCceEEEecCh
Q 039518 540 SHYKNRGEVCSLEDIMLEMD--LIIRPQGFIIIRDEK 574 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~d--RilRP~G~~i~~d~~ 574 (617)
.. .....++-++- |+|+|||.+++....
T Consensus 111 ~~-------~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 111 AK-------ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HH-------HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred Cc-------chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 31 12345555565 999999999997443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00037 Score=67.00 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=55.6
Q ss_pred eeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHH----hhcccc---cc-cccCCCCCCCCCccchhhcc
Q 039518 469 RNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIY----NRGILG---AF-HDWCEPFSTYPRTYDLLHAN 536 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~----~RGlig---~~-~~~~~~f~typrtyDl~H~~ 536 (617)
++|||+|||.|.++.+|... ..-|..| |-. ..+..+- +.|+-. ++ .|..+.++..+. ||+|.++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMI---DPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEE---ESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEE---ECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 58999999999999888654 2222222 222 3333332 234421 22 233333344456 9999755
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.- .-....++-++-|+|+|||.+++.+
T Consensus 134 ~~---------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD---------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT---------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC---------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 21 2345678899999999999999964
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00047 Score=71.44 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=53.3
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHHH-Hh-hcc--cccccccCCCCCCCCCccchhhccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAI-YN-RGI--LGAFHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~-~~-RGl--ig~~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
..|||+|||.|+|+..|.+. .|.-+-+-...++..+..+ .+ .|. +-+... ...+..-+.+||+|.++..++ .
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~-~- 160 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGES-S- 160 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCC-C-
T ss_pred CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccc-c-
Confidence 68999999999999888776 3444433111111111000 00 111 111111 012211147899999876664 0
Q ss_pred cCCCCCChh-----hHHhhhhhcccCCceEEEe
Q 039518 544 NRGEVCSLE-----DIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 544 ~~~~~c~~~-----~~l~e~dRilRP~G~~i~~ 571 (617)
....++ .+|-++-|+|+|||.+++.
T Consensus 161 ---g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 161 ---PNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ---CcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 001111 3688899999999999995
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00035 Score=69.29 Aligned_cols=116 Identities=12% Similarity=0.163 Sum_probs=63.7
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhh------------cccc---cccccCCCCCC-C-CC
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNR------------GILG---AFHDWCEPFST-Y-PR 528 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~R------------Glig---~~~~~~~~f~t-y-pr 528 (617)
..|||+|||.|+|+.+|... .. +|+-.|-. .-+..+-++ |+-. +..|..+.++. + +.
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPED---LILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTS---EEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCC---CEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 67999999999999888643 22 22222333 333333222 5421 12232222221 2 26
Q ss_pred ccchhhcccccc-cc-c--cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCCc
Q 039518 529 TYDLLHANHLFS-HY-K--NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFLW 589 (617)
Q Consensus 529 tyDl~H~~~~~s-~~-~--~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~W 589 (617)
++|.|... |. .| + ....|-....+|-++-|+|+|||.+++. |..+..+.+.+.+..-.+
T Consensus 128 ~~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 128 QLSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp CEEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred ccCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 77776521 22 01 0 0011222258999999999999999984 776666666665544433
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00056 Score=68.28 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=56.1
Q ss_pred CCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhh-cccccccccCCCC--CCCCCccchhh
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEPF--STYPRTYDLLH 534 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~f--~typrtyDl~H 534 (617)
+.+| -.|||+|||.|++++.|.+. .|..+-+-|.-...-+..+-+| .+.-+..|-..+. ...+..||+|.
T Consensus 74 l~~g--~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~ 151 (232)
T 3id6_C 74 IRKG--TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLY 151 (232)
T ss_dssp CCTT--CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred CCCC--CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEE
Confidence 5566 57999999999999877542 3444433221100112333344 2444445544331 11235799987
Q ss_pred ccccccccccCCCCCChhhHHh-hhhhcccCCceEEEe
Q 039518 535 ANHLFSHYKNRGEVCSLEDIML-EMDLIIRPQGFIIIR 571 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~-e~dRilRP~G~~i~~ 571 (617)
++..+ .....+|+ .+.|+|+|||.+++.
T Consensus 152 ~d~a~---------~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 152 VDIAQ---------PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp ECCCC---------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ecCCC---------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 55322 23334555 456799999999986
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00056 Score=63.67 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=64.0
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCc-HHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVA-SFSAFLLP-LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQ 285 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG-~~a~~La~-~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~ 285 (617)
+..+.|.+++.... .++.+|||||||.| ..+..|++ .++ ++.++|+++.+++ +...|+.+
T Consensus 20 ~m~e~LaeYI~~~~-----~~~~rVlEVG~G~g~~vA~~La~~~g~---~V~atDInp~Av~----------~v~dDiF~ 81 (153)
T 2k4m_A 20 HMWNDLAVYIIRCS-----GPGTRVVEVGAGRFLYVSDYIRKHSKV---DLVLTDIKPSHGG----------IVRDDITS 81 (153)
T ss_dssp HHHHHHHHHHHHHS-----CSSSEEEEETCTTCCHHHHHHHHHSCC---EEEEECSSCSSTT----------EECCCSSS
T ss_pred hHHHHHHHHHHhcC-----CCCCcEEEEccCCChHHHHHHHHhCCC---eEEEEECCccccc----------eEEccCCC
Confidence 33555666663321 23457999999999 69999997 776 5677798877655 55666654
Q ss_pred CCCCC--CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEE
Q 039518 286 LPYPS--SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 286 Lpf~d--~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
|..+ +.||+|.+.+. +.+....+.++.+.+ |.-++|.
T Consensus 82 -P~~~~Y~~~DLIYsirP----P~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 82 -PRMEIYRGAALIYSIRP----PAEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp -CCHHHHTTEEEEEEESC----CTTTHHHHHHHHHHH--TCEEEEE
T ss_pred -CcccccCCcCEEEEcCC----CHHHHHHHHHHHHHc--CCCEEEE
Confidence 3222 47999997653 335566677777655 4556664
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00034 Score=68.89 Aligned_cols=125 Identities=13% Similarity=0.172 Sum_probs=71.9
Q ss_pred eeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHh----hcccc---c-ccccCCCCCCCC-----Ccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYN----RGILG---A-FHDWCEPFSTYP-----RTY 530 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~----RGlig---~-~~~~~~~f~typ-----rty 530 (617)
++|||+|||.|.++.+|... .|..+-+-| ..+.++-+ .|+-. + ..|..+.++..| .+|
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~----~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDP----NATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCH----HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH----HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 58999999999998888653 233332211 33333332 24422 1 122222122222 689
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC------------hHHHHHHHh----hhhcCCceEEEe
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE------------KSLITRIRD----LAPKFLWDVELH 594 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~------------~~~~~~~~~----~~~~~~W~~~~~ 594 (617)
|+|.++.... ....++-++-|+|||||.+++.+- ......+++ +...-+++..+.
T Consensus 150 D~V~~d~~~~---------~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 220 (232)
T 3cbg_A 150 DLIFIDADKR---------NYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVI 220 (232)
T ss_dssp EEEEECSCGG---------GHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred CEEEECCCHH---------HHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEE
Confidence 9997554322 235678889999999999999532 122233333 344556776665
Q ss_pred eccccCCCceeEEEEEec
Q 039518 595 SLENREKKMESVLICRKK 612 (617)
Q Consensus 595 ~~e~~~~~~~~~l~~~k~ 612 (617)
.. .+.+.+++|.
T Consensus 221 p~------~dG~~~~~~~ 232 (232)
T 3cbg_A 221 PL------GDGMTLALKK 232 (232)
T ss_dssp CS------BTCEEEEEEC
T ss_pred Ec------CCeEEEEEeC
Confidence 43 2568888874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00034 Score=67.89 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=57.7
Q ss_pred HHHhcc--CCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh----c--------ccccccc
Q 039518 457 YWQLMN--VNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR----G--------ILGAFHD 518 (617)
Q Consensus 457 y~~~~~--~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R----G--------lig~~~~ 518 (617)
....+. +..+ .+|||+|||.|.+++.|... ..-|..+ |-. ..+..+-++ | +--+..|
T Consensus 67 ~l~~l~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 141 (226)
T 1i1n_A 67 ALELLFDQLHEG--AKALDVGSGSGILTACFARMVGCTGKVIGI---DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 141 (226)
T ss_dssp HHHHTTTTSCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEEEE---ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHhhCCCC--CEEEEEcCCcCHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHhhcccccCCCcEEEEECC
Confidence 344443 4444 48999999999999888642 1222222 222 333333222 2 1112234
Q ss_pred cCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 519 WCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 519 ~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
..+.+. -+..||+|+++..+. .++-++-|+|+|||.+++.-
T Consensus 142 ~~~~~~-~~~~fD~i~~~~~~~------------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 142 GRMGYA-EEAPYDAIHVGAAAP------------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp GGGCCG-GGCCEEEEEECSBBS------------SCCHHHHHTEEEEEEEEEEE
T ss_pred cccCcc-cCCCcCEEEECCchH------------HHHHHHHHhcCCCcEEEEEE
Confidence 333222 136899999776664 34568889999999999974
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0017 Score=65.36 Aligned_cols=112 Identities=8% Similarity=0.042 Sum_probs=69.8
Q ss_pred cCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh-----cc--c-ccccccCCCCCCCCCc
Q 039518 462 NVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR-----GI--L-GAFHDWCEPFSTYPRT 529 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R-----Gl--i-g~~~~~~~~f~typrt 529 (617)
.+..+ .+|||+|||.|+++..|... ..-|.. .|.. ..+..+-++ |+ + -...|..+.++ +.+
T Consensus 107 ~~~~~--~~VLD~G~G~G~~~~~la~~~~~~~~v~~---vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--~~~ 179 (275)
T 1yb2_A 107 GLRPG--MDILEVGVGSGNMSSYILYALNGKGTLTV---VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQM 179 (275)
T ss_dssp CCCTT--CEEEEECCTTSHHHHHHHHHHTTSSEEEE---ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCC
T ss_pred CCCCc--CEEEEecCCCCHHHHHHHHHcCCCCEEEE---EECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--CCC
Confidence 34444 58999999999999888654 232222 2333 455544444 52 1 12345555443 268
Q ss_pred cchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChH-HHHHHHhhhhcCCceE
Q 039518 530 YDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKS-LITRIRDLAPKFLWDV 591 (617)
Q Consensus 530 yDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~-~~~~~~~~~~~~~W~~ 591 (617)
||+|-++ + -....+|-++-|+|+|||.+++.+... ..+++.+.++...|..
T Consensus 180 fD~Vi~~-~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 180 YDAVIAD-I----------PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp EEEEEEC-C----------SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred ccEEEEc-C----------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 9998741 1 123478999999999999999986543 5566666665555553
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00071 Score=67.36 Aligned_cols=87 Identities=11% Similarity=0.089 Sum_probs=56.0
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhhcc--cccccccCCCCCCCCCccchhhccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNRGI--LGAFHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~RGl--ig~~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
.+|||+|||.|.++..|.+. ..-| +-.|-. ..+..+-+++- -=+..|.. .++.-+.+||+|.+....
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~~---- 158 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEITT---FGLDVSKVAIKAAAKRYPQVTFCVASSH-RLPFSDTSMDAIIRIYAP---- 158 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTSEE---EEEESCHHHHHHHHHHCTTSEEEECCTT-SCSBCTTCEEEEEEESCC----
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCeE---EEEeCCHHHHHHHHHhCCCcEEEEcchh-hCCCCCCceeEEEEeCCh----
Confidence 57999999999999888654 3222 223333 56666766651 11112222 223223789999864331
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
..+-|+-|+|||||.+++.+
T Consensus 159 ---------~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 159 ---------CKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp ---------CCHHHHHHHEEEEEEEEEEE
T ss_pred ---------hhHHHHHHhcCCCcEEEEEE
Confidence 25899999999999999874
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0026 Score=63.83 Aligned_cols=121 Identities=9% Similarity=0.042 Sum_probs=69.7
Q ss_pred eeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh-------hcc---cccc-cccCCCCC-----CC-CC
Q 039518 468 IRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN-------RGI---LGAF-HDWCEPFS-----TY-PR 528 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~-------RGl---ig~~-~~~~~~f~-----ty-pr 528 (617)
-.+|||+|||.|.++..|..+ |- .+|.-.|-. ..+..+-+ .|+ +-++ .|..+..+ .+ +.
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCEEEEeCChHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 358999999999998877543 11 122333333 33333322 233 2222 23322211 12 37
Q ss_pred ccchhhccccccccc------------cCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceE
Q 039518 529 TYDLLHANHLFSHYK------------NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDV 591 (617)
Q Consensus 529 tyDl~H~~~~~s~~~------------~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~ 591 (617)
+||+|-++--|..-. .....+.++.++-++-|+|+|||.+++--..+.+.++.+.++.- |..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 899999874443110 00234667899999999999999998876666666777766663 653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0018 Score=65.12 Aligned_cols=115 Identities=10% Similarity=0.061 Sum_probs=71.6
Q ss_pred HHhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh----cc----cccccccCCCCCC
Q 039518 458 WQLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR----GI----LGAFHDWCEPFST 525 (617)
Q Consensus 458 ~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R----Gl----ig~~~~~~~~f~t 525 (617)
...+.+..+ .+|||+|||.|.++.+|... ..- |+-.|.. ..+..+-++ |+ --...|..+.++
T Consensus 105 ~~~~~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 178 (277)
T 1o54_A 105 AMMLDVKEG--DRIIDTGVGSGAMCAVLARAVGSSGK---VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD- 178 (277)
T ss_dssp HHHTTCCTT--CEEEEECCTTSHHHHHHHHHTTTTCE---EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS-
T ss_pred HHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCCcE---EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc-
Confidence 333445555 48999999999999888643 232 2333443 555555444 43 122345555433
Q ss_pred CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCce
Q 039518 526 YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWD 590 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~ 590 (617)
+.+||+|-++- -....+|-++-|+|+|||.+++... .+.+.++.+.++...|.
T Consensus 179 -~~~~D~V~~~~-----------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 179 -EKDVDALFLDV-----------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 232 (277)
T ss_dssp -CCSEEEEEECC-----------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred -CCccCEEEECC-----------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 26899987421 1224688899999999999999865 34556666666555565
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00015 Score=66.54 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=55.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc-ccc-ccccCCCCCCCC---Cccchhhcccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI-LGA-FHDWCEPFSTYP---RTYDLLHANHL 538 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl-ig~-~~~~~~~f~typ---rtyDl~H~~~~ 538 (617)
.+|||+|||.|.++.+|.....- |+-.|.. ..+..+-+ .|+ +-+ ..|+.+..+..+ .+||+|.++..
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 57999999999999888655322 3333443 44444333 232 111 112222122122 27999998776
Q ss_pred ccccccCCCCCChhhHHhhhh--hcccCCceEEEecC
Q 039518 539 FSHYKNRGEVCSLEDIMLEMD--LIIRPQGFIIIRDE 573 (617)
Q Consensus 539 ~s~~~~~~~~c~~~~~l~e~d--RilRP~G~~i~~d~ 573 (617)
|. -..+.++-++- |+|+|||.+++...
T Consensus 120 ~~--------~~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 120 YA--------MDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp TT--------SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred Cc--------hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 54 12235555665 99999999999744
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00085 Score=62.49 Aligned_cols=58 Identities=12% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChH----------HHHHHHhhhhcCCc
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKS----------LITRIRDLAPKFLW 589 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~----------~~~~~~~~~~~~~W 589 (617)
+.+||+|.+..++.+. .-+...+|-|+-|+|||||++++.+... ..+++.+.++.--+
T Consensus 61 ~~~fD~V~~~~~l~~~-----~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 61 ESSFDIILSGLVPGST-----TLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp SSCEEEEEECCSTTCC-----CCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred CCCEeEEEECChhhhc-----ccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 4899999987776632 1235789999999999999999964311 14556666654444
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.001 Score=66.01 Aligned_cols=119 Identities=11% Similarity=0.157 Sum_probs=65.9
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHh----------hcc--cc-cccccCCCCCC-C-CCcc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYN----------RGI--LG-AFHDWCEPFST-Y-PRTY 530 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~----------RGl--ig-~~~~~~~~f~t-y-prty 530 (617)
..|||+|||.|.|+..|... ..-|.- .|-. ..+..+-+ .|+ |- +..|.-+.++. + +.+|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~~v~G---iDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDTLILG---LEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTSEEEE---EESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCCeEEE---EECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 57999999999999988653 222222 2333 33333321 233 11 12233222221 2 4789
Q ss_pred chhhcccccc-ccc---cCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCC-ceEE
Q 039518 531 DLLHANHLFS-HYK---NRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFL-WDVE 592 (617)
Q Consensus 531 Dl~H~~~~~s-~~~---~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~-W~~~ 592 (617)
|+|... |. .|. ..+.|.....+|-|+-|+|+|||.+++. |..+..+.+.+.+..-- |+..
T Consensus 125 D~v~~~--~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 125 TKMFFL--FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEEEEE--SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEE
T ss_pred eEEEEe--CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 998642 22 110 1133444468999999999999999985 76666666666554432 5443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00053 Score=66.99 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=58.8
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhh----cc---cc-cccccCCCCCCC--CCccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNR----GI---LG-AFHDWCEPFSTY--PRTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~R----Gl---ig-~~~~~~~~f~ty--prtyDl~H~ 535 (617)
.+|||+|||.|.++.+|... .. +|+-.|.. ..+..+-++ |+ +- +..|..+..+.. +.+||+|-+
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPEA---TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 58999999999999888643 22 22333443 455555444 44 22 223333322222 478999986
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+...+ ....+|-++-|+|+|||.+++.+
T Consensus 133 ~~~~~---------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAKG---------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGGS---------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCHH---------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 55443 34578899999999999999974
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00016 Score=77.85 Aligned_cols=122 Identities=13% Similarity=0.182 Sum_probs=73.8
Q ss_pred HHHHHhcc-CCCCCeeeEEecccc------ccchhhhccCC-----CeEEEEeccCCCCchhHHHHhhcccccccccCCC
Q 039518 455 RHYWQLMN-VNETEIRNAMDMNAY------CGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEP 522 (617)
Q Consensus 455 ~~y~~~~~-~~~~~~Rn~mDm~~~------~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~ 522 (617)
..|.+.|. +.. +-.+|||+||| .||....|... .|.-+-+-|.- . .....+-=+..|-.+
T Consensus 204 ~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m----~--~~~~rI~fv~GDa~d- 275 (419)
T 3sso_A 204 PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS----H--VDELRIRTIQGDQND- 275 (419)
T ss_dssp HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG----G--GCBTTEEEEECCTTC-
T ss_pred HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH----h--hcCCCcEEEEecccc-
Confidence 45666665 332 23789999999 77776666432 34555444432 1 011111111222211
Q ss_pred CCCC------CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC------------------hHHHH
Q 039518 523 FSTY------PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE------------------KSLIT 578 (617)
Q Consensus 523 f~ty------prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~------------------~~~~~ 578 (617)
+++- ..+||+|.+++. ++ . ......|-|+=|+|||||++|+.|- ..+++
T Consensus 276 lpf~~~l~~~d~sFDlVisdgs--H~---~--~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~ 348 (419)
T 3sso_A 276 AEFLDRIARRYGPFDIVIDDGS--HI---N--AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLG 348 (419)
T ss_dssp HHHHHHHHHHHCCEEEEEECSC--CC---H--HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHH
T ss_pred cchhhhhhcccCCccEEEECCc--cc---c--hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHH
Confidence 1111 278999997643 22 1 1345789999999999999999632 45788
Q ss_pred HHHhhhhcCCceE
Q 039518 579 RIRDLAPKFLWDV 591 (617)
Q Consensus 579 ~~~~~~~~~~W~~ 591 (617)
.++++...+.|+-
T Consensus 349 ~lk~l~D~l~~~~ 361 (419)
T 3sso_A 349 LLKSLIDAIQHQE 361 (419)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHhcccc
Confidence 9999999888764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00079 Score=66.32 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=51.4
Q ss_pred eeEEeccccccchhhhcc--CCCeEEEEeccCCCC-chh-HHH---H----hhccccc--ccccCCCCCC-CCCccchhh
Q 039518 469 RNAMDMNAYCGGFAVALN--SLPVWVMNIVPISMK-NTL-SAI---Y----NRGILGA--FHDWCEPFST-YPRTYDLLH 534 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~--~~~v~vmnv~p~~~~-~~l-~~~---~----~RGlig~--~~~~~~~f~t-yprtyDl~H 534 (617)
..|||+|||.|.++.+|. ....-|.-| |.. ..+ .++ - ++|+-.+ .+.=.+.++. +...+|.++
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~~v~Gv---D~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGI---DPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTEEEEEE---CSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 689999999999999987 444434433 333 332 222 2 3454322 1111122321 113344444
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
....+... ....+-....+|-|+-|+|||||.+++
T Consensus 103 ~~~~~~~~-~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 103 ILFPWGTL-LEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EESCCHHH-HHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EeCCCcHH-hhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 32111100 000011224679999999999999999
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0017 Score=66.36 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=53.5
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCC--C-chhHH-HHhhccccc--ccccCCCCCCCCCccchhhccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISM--K-NTLSA-IYNRGILGA--FHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~--~-~~l~~-~~~RGlig~--~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
..|||+|||.|+|+..|... .|.-+-+-|... . +.+.. .+.-++.-+ -.|-. .++ +.+||+|-++..+.
T Consensus 84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~--~~~fD~Vvsd~~~~- 159 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVT-KME--PFQADTVLCDIGES- 159 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGG-GCC--CCCCSEEEECCCCC-
T ss_pred CEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHh-hCC--CCCcCEEEECCCcC-
Confidence 68999999999998888664 566666655310 0 00000 000011111 11221 234 58999998765422
Q ss_pred cccCCCCCChh-----hHHhhhhhcccCCc--eEEEe
Q 039518 542 YKNRGEVCSLE-----DIMLEMDLIIRPQG--FIIIR 571 (617)
Q Consensus 542 ~~~~~~~c~~~-----~~l~e~dRilRP~G--~~i~~ 571 (617)
...-.++ .+|-++.|+|+||| .+++.
T Consensus 160 ----~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 160 ----NPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp ----CSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred ----CCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 1100011 26788999999999 88885
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0024 Score=66.22 Aligned_cols=97 Identities=10% Similarity=0.151 Sum_probs=54.2
Q ss_pred hccCCCCCeeeEEeccccccchhhhccCC--C-eEEEEeccCCCC-chhHHHHhhc--------------c---cc-ccc
Q 039518 460 LMNVNETEIRNAMDMNAYCGGFAVALNSL--P-VWVMNIVPISMK-NTLSAIYNRG--------------I---LG-AFH 517 (617)
Q Consensus 460 ~~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~-v~vmnv~p~~~~-~~l~~~~~RG--------------l---ig-~~~ 517 (617)
.+.+..+ .+|||+|||.|.++.+|... + .-|..+ |-. ..+..+-++. + +- ...
T Consensus 100 ~l~~~~g--~~VLDiG~G~G~~~~~la~~~g~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 100 MMDINPG--DTVLEAGSGSGGMSLFLSKAVGSQGRVISF---EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEE---ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCceEEEE---eCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 3445555 48999999999999888642 2 223322 222 3333333321 1 11 223
Q ss_pred ccCCCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 518 DWCEPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 518 ~~~~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|..+....+| .+||+|.++. .. ...++-++-|+|+|||.+++..
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~-~~----------~~~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDM-LN----------PHVTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp CTTCCC-------EEEEEECS-SS----------TTTTHHHHGGGEEEEEEEEEEE
T ss_pred ChHHcccccCCCCeeEEEECC-CC----------HHHHHHHHHHhcCCCcEEEEEe
Confidence 4444322233 5899998532 12 1237889999999999999864
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00092 Score=65.71 Aligned_cols=125 Identities=14% Similarity=0.257 Sum_probs=73.1
Q ss_pred eeEEeccccccchhhhccCC-----CeEEEEeccCCCCchhHHHHhh----cccc---cc-c----------------cc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMKNTLSAIYNR----GILG---AF-H----------------DW 519 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~~~l~~~~~R----Glig---~~-~----------------~~ 519 (617)
.+|||+|||.|.++..|... .|..+-+-| ..+..+-++ |+-. +. . .|
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSE----EWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCH----HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCH----HHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 58999999999999888543 233332211 333333332 4321 11 1 12
Q ss_pred CCCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC------------hHHHHHH----Hh
Q 039518 520 CEPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE------------KSLITRI----RD 582 (617)
Q Consensus 520 ~~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~------------~~~~~~~----~~ 582 (617)
-..|++ + .+||+|.++.... ....++-++-|+|||||.+++.+- ......+ +.
T Consensus 138 ~~~f~~-~~~~fD~I~~~~~~~---------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 207 (239)
T 2hnk_A 138 ASDFAF-GPSSIDLFFLDADKE---------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNEL 207 (239)
T ss_dssp GTTTCC-STTCEEEEEECSCGG---------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHH
T ss_pred cccccC-CCCCcCEEEEeCCHH---------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHH
Confidence 222332 2 6899998654333 234778899999999999999751 1222233 33
Q ss_pred hhhcCCceEEEeeccccCCCceeEEEEEecc
Q 039518 583 LAPKFLWDVELHSLENREKKMESVLICRKKF 613 (617)
Q Consensus 583 ~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~~ 613 (617)
+...-++++...... +.+.+++|+.
T Consensus 208 ~~~~~~~~~~~~p~~------~g~~~~~~~~ 232 (239)
T 2hnk_A 208 VYNDSLVDVSLVPIA------DGVSLVRKRL 232 (239)
T ss_dssp HHHCTTEEEEEECST------TCEEEEEECC
T ss_pred HhhCCCeEEEEEEcC------CceEeeeehh
Confidence 445566777766432 4588888875
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00071 Score=64.96 Aligned_cols=99 Identities=10% Similarity=0.088 Sum_probs=60.9
Q ss_pred HHHHhccCCCCCeeeEEeccccccchhhhccCC-----CeEEEEeccCCCC-chhHHHHhh----cccc---cccccCCC
Q 039518 456 HYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-----PVWVMNIVPISMK-NTLSAIYNR----GILG---AFHDWCEP 522 (617)
Q Consensus 456 ~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-----~v~vmnv~p~~~~-~~l~~~~~R----Glig---~~~~~~~~ 522 (617)
...+.+.+..+ .+|||+|||.|.+++.|... .|..+ |.. ..+..+-++ |+-. ...|..+.
T Consensus 68 ~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~v-----D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 140 (215)
T 2yxe_A 68 MMCELLDLKPG--MKVLEIGTGCGYHAAVTAEIVGEDGLVVSI-----ERIPELAEKAERTLRKLGYDNVIVIVGDGTLG 140 (215)
T ss_dssp HHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEEEE-----ESCHHHHHHHHHHHHHHTCTTEEEEESCGGGC
T ss_pred HHHHhhCCCCC--CEEEEECCCccHHHHHHHHHhCCCCEEEEE-----eCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 33444445554 48999999999999888542 23333 322 444444443 3211 12233333
Q ss_pred CCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 523 FSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 523 f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
++ -+.+||+|.+...+.+. .-++-|+|+|||.+++.-..
T Consensus 141 ~~-~~~~fD~v~~~~~~~~~------------~~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 141 YE-PLAPYDRIYTTAAGPKI------------PEPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp CG-GGCCEEEEEESSBBSSC------------CHHHHHTEEEEEEEEEEESS
T ss_pred CC-CCCCeeEEEECCchHHH------------HHHHHHHcCCCcEEEEEECC
Confidence 32 13689999988877643 23888999999999997443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.001 Score=65.37 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=71.3
Q ss_pred eEEeccccccchhhhccC---CCeEEEEeccCCCCchhHHH---H-hhccc-c---cc-cccCCCCCCC-CCccchhhcc
Q 039518 470 NAMDMNAYCGGFAVALNS---LPVWVMNIVPISMKNTLSAI---Y-NRGIL-G---AF-HDWCEPFSTY-PRTYDLLHAN 536 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~~~l~~~---~-~RGli-g---~~-~~~~~~f~ty-prtyDl~H~~ 536 (617)
+|||+|||.|.++.+|.. ..--|..|=... ..+.++ + +.|+- . +. .|-.+..+.. +.+||+|-++
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPES--EHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCH--HHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 899999999998887754 122232222211 233232 2 22432 1 11 1122222334 4789999755
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEecC------------hHHHHHHHhhhhcCCce----EEEeeccccC
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE------------KSLITRIRDLAPKFLWD----VELHSLENRE 600 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~------------~~~~~~~~~~~~~~~W~----~~~~~~e~~~ 600 (617)
.-.. ....++-++-|+|||||.+++.|- ......++++.+.+++. +.+..
T Consensus 137 ~~~~---------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp----- 202 (221)
T 3dr5_A 137 VSPM---------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLP----- 202 (221)
T ss_dssp CCTT---------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEES-----
T ss_pred CcHH---------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEee-----
Confidence 4333 234678889999999999998532 12223445555555444 44432
Q ss_pred CCceeEEEEEecc
Q 039518 601 KKMESVLICRKKF 613 (617)
Q Consensus 601 ~~~~~~l~~~k~~ 613 (617)
..+.+++++|.+
T Consensus 203 -~gdGl~~~~~~~ 214 (221)
T 3dr5_A 203 -LGAGLTVVTKAL 214 (221)
T ss_dssp -STTCEEEEEECC
T ss_pred -ccchHHHHHHHH
Confidence 246789998875
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00064 Score=65.39 Aligned_cols=126 Identities=10% Similarity=0.108 Sum_probs=69.9
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc----cccc-cccCCCCCCC-CCc-cchhhcc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI----LGAF-HDWCEPFSTY-PRT-YDLLHAN 536 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl----ig~~-~~~~~~f~ty-prt-yDl~H~~ 536 (617)
..|||+|||.|.++..+..... -.|+-.|.. ..+..+-++ |+ +-++ .|..+..+.. +.+ ||+|-++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 4799999999999887554432 123333444 444444332 33 1111 2222222222 368 9999877
Q ss_pred ccccccccCCCCCChhhHHhhh--hhcccCCceEEEecChHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEM--DLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~--dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
..|. . -....++-++ -|+|+|||.+++...... +.+. .-.|..... ...+...+.+.+|.
T Consensus 133 ~~~~-----~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~---~~~~--~~~~~~~~~----~~yG~~~~~~~~~~ 194 (201)
T 2ift_A 133 PPFH-----F--NLAEQAISLLCENNWLKPNALIYVETEKDK---PLIT--PENWTLLKE----KTTGIVSYRLYQNL 194 (201)
T ss_dssp CCSS-----S--CHHHHHHHHHHHTTCEEEEEEEEEEEESSS---CCCC--CTTEEEEEE----EEETTEEEEEEEEC
T ss_pred CCCC-----C--ccHHHHHHHHHhcCccCCCcEEEEEECCCC---Cccc--cchhHHHHH----HhcCCEEEEEEecc
Confidence 6643 1 1245677777 789999999999865543 1111 124654332 12334667776654
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0055 Score=71.29 Aligned_cols=113 Identities=11% Similarity=0.164 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCC---eEEEEeccCCCC-chhHHHHhh----------cc--c
Q 039518 450 WQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLP---VWVMNIVPISMK-NTLSAIYNR----------GI--L 513 (617)
Q Consensus 450 w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~---v~vmnv~p~~~~-~~l~~~~~R----------Gl--i 513 (617)
...+++...+.+....+ ..|||+|||.|.++.+|.... .-|.-| |-. ..+..+-+| |+ |
T Consensus 706 ~eqRle~LLelL~~~~g--~rVLDVGCGTG~lai~LAr~g~p~a~VtGV---DIS~emLe~AReRLa~~lnAkr~gl~nV 780 (950)
T 3htx_A 706 SKQRVEYALKHIRESSA--STLVDFGCGSGSLLDSLLDYPTSLQTIIGV---DISPKGLARAAKMLHVKLNKEACNVKSA 780 (950)
T ss_dssp HHHHHHHHHHHHHHSCC--SEEEEETCSSSHHHHHHTSSCCCCCEEEEE---ESCHHHHHHHHHHHHHHTTTTCSSCSEE
T ss_pred HHHHHHHHHHHhcccCC--CEEEEECCCCCHHHHHHHHhCCCCCeEEEE---ECCHHHHHHHHHHhhhccchhhcCCCce
Confidence 34444444444433333 579999999999999998764 233333 333 455555441 43 2
Q ss_pred ccccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 514 GAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 514 g~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
-+++.=-+.++.-..+||+|.+..++.++ .+ =....++-|+-|+|||| .+|+..
T Consensus 781 efiqGDa~dLp~~d~sFDlVV~~eVLeHL---~d-p~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHM---EE-DQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EEEESCTTSCCTTSCSCCEEEEESCGGGS---CH-HHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EEEECchHhCCcccCCeeEEEEeCchhhC---Ch-HHHHHHHHHHHHHcCCC-EEEEEe
Confidence 22221122244444899999999999875 21 11234788999999999 777753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00012 Score=71.92 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=58.5
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc---ccc-ccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI---LGA-FHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl---ig~-~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|||+|||.|+++.+|..... .|+-.|-. ..+..+-+ .|+ +-+ ..|..+. + -+.+||+|.++..|
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL-A-SFLKADVVFLSPPW 154 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-G-GGCCCSEEEECCCC
T ss_pred CEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHh-c-ccCCCCEEEECCCc
Confidence 5799999999999999987653 33333433 34433332 233 111 1232221 2 13799999988877
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.... .....+.|+-|+|+|||.+|+..
T Consensus 155 ~~~~------~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 155 GGPD------YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSGG------GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcc------hhhhHHHHHHhhcCCcceeHHHH
Confidence 7431 11236779999999999988764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0024 Score=60.09 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCCCCeeeEEeccccccchhhhccCC-------------CeEEEEeccCCCCchhHHHHhhcccccccccCCC-C-----
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL-------------PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEP-F----- 523 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~-------------~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~-f----- 523 (617)
+..+ .+|||+|||.|.++.+|... .|+.+-+.|....+.+.++ . -.|..+. +
T Consensus 20 ~~~~--~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~-~------~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 20 LRPG--LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL-C------PADVTDPRTSQRIL 90 (196)
T ss_dssp CCTT--CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEE-C------SCCTTSHHHHHHHH
T ss_pred CCCC--CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEE-E------eccCCCHHHHHHHH
Confidence 4444 58999999999999888543 2455444442211111000 0 1111110 0
Q ss_pred CCCC-CccchhhccccccccccCCCC--------CChhhHHhhhhhcccCCceEEEec
Q 039518 524 STYP-RTYDLLHANHLFSHYKNRGEV--------CSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 524 ~typ-rtyDl~H~~~~~s~~~~~~~~--------c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
..+| .+||+|-++..+... ... .....+|-|+-|+|||||.+++.+
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNAT---GFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCC---SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhcCCCCCcEEEeCCCCCCC---CCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 0023 689999876543310 000 011367889999999999999973
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.001 Score=65.28 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=58.8
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccC---CCeEEEEeccCCCCchhHHHHhh----cccc---cccccCCCCCCC
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMKNTLSAIYNR----GILG---AFHDWCEPFSTY 526 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~~~l~~~~~R----Glig---~~~~~~~~f~ty 526 (617)
..+.+.+..+ .+|||+|||.|.+++.|.. ..|..+-+.| ..+..+-++ |+-. ...|..++++.
T Consensus 83 ~~~~l~~~~~--~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 155 (235)
T 1jg1_A 83 MLEIANLKPG--MNILEVGTGSGWNAALISEIVKTDVYTIERIP----ELVEFAKRNLERAGVKNVHVILGDGSKGFPP- 155 (235)
T ss_dssp HHHHHTCCTT--CCEEEECCTTSHHHHHHHHHHCSCEEEEESCH----HHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-
T ss_pred HHHhcCCCCC--CEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCH----HHHHHHHHHHHHcCCCCcEEEECCcccCCCC-
Confidence 3444445554 4899999999999998865 3444443222 344444333 3311 12233233331
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
...||+|.++..+..+ .-++-|+|+|||.+++.-.
T Consensus 156 ~~~fD~Ii~~~~~~~~------------~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKI------------PEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp GCCEEEEEECSBBSSC------------CHHHHHTEEEEEEEEEEEC
T ss_pred CCCccEEEECCcHHHH------------HHHHHHhcCCCcEEEEEEe
Confidence 1249999977776633 3378899999999999743
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=68.66 Aligned_cols=95 Identities=11% Similarity=0.188 Sum_probs=61.0
Q ss_pred CCCeeeEEeccccccchhhhccC--CC--eEEEEeccCCCCchhHHHHhh-cccccccccCCCCCCCCCccchhhccccc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNS--LP--VWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~--~~--v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
....+.|+|+|||.|.++.+|.+ .. +.+.-+ | ..+..+-++ ++-=+-+|.-+++ |.. |+|.+..++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~---p~~-D~v~~~~vl 271 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P----HVIQDAPAFSGVEHLGGDMFDGV---PKG-DAIFIKWIC 271 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCCTTEEEEECCTTTCC---CCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H----HHHHhhhhcCCCEEEecCCCCCC---CCC-CEEEEechh
Confidence 45678999999999999999864 22 333332 1 111111111 2222334554544 444 999998888
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
-+| .+. ....+|-++=|.|+|||.++|.|
T Consensus 272 h~~---~~~-~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 272 HDW---SDE-HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp GGB---CHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcC---CHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 776 211 23468999999999999999964
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0013 Score=69.26 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=61.3
Q ss_pred CCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHHh-hcccccccccCCCCCCCCCccchhhccccccc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIYN-RGILGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~~-RGlig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
.....+|||+|||.|.++.+|.+. .+-+..+ |-+..+..+-+ .++--+-+|..+++ |. ||+|.+.+++-+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~a~~~~~v~~~~~d~~~~~---~~-~D~v~~~~~lh~ 279 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINF---DLPQVIENAPPLSGIEHVGGDMFASV---PQ-GDAMILKAVCHN 279 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHHHHTTCCCCTTEEEEECCTTTCC---CC-EEEEEEESSGGG
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEe---ChHHHHHhhhhcCCCEEEeCCcccCC---CC-CCEEEEeccccc
Confidence 345689999999999999998643 3322211 11111111111 12323344555543 45 999999998876
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
| .+. ....+|-++=|+|+|||.++|.|
T Consensus 280 ~---~d~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 280 W---SDE-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp S---CHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C---CHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 6 211 12378999999999999999873
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.00037 Score=67.95 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=56.3
Q ss_pred CCCCCeeeEEeccccccchhhhccCC----------CeEEEEeccCCCCchhHHHHhh----c--------ccccccccC
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL----------PVWVMNIVPISMKNTLSAIYNR----G--------ILGAFHDWC 520 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~----------~v~vmnv~p~~~~~~l~~~~~R----G--------lig~~~~~~ 520 (617)
+..+ ..|||+|||.|.+++.|... .|..+-+.| ..+..+-++ | +--+..|..
T Consensus 82 ~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 155 (227)
T 1r18_A 82 LKPG--ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA----ELVRRSKANLNTDDRSMLDSGQLLIVEGDGR 155 (227)
T ss_dssp CCTT--CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH----HHHHHHHHHHHHHHHHHHHHTSEEEEESCGG
T ss_pred CCCC--CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCH----HHHHHHHHHHHhcCccccCCCceEEEECCcc
Confidence 4444 47999999999999888652 344433222 333333222 2 111223444
Q ss_pred CCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 521 EPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 521 ~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+.++. ..+||+|++...+.. ++-++-|+|+|||.+++.-
T Consensus 156 ~~~~~-~~~fD~I~~~~~~~~------------~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 156 KGYPP-NAPYNAIHVGAAAPD------------TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp GCCGG-GCSEEEEEECSCBSS------------CCHHHHHTEEEEEEEEEEE
T ss_pred cCCCc-CCCccEEEECCchHH------------HHHHHHHHhcCCCEEEEEE
Confidence 43332 268999997776653 4578889999999999973
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0037 Score=62.47 Aligned_cols=109 Identities=9% Similarity=0.119 Sum_probs=64.2
Q ss_pred HHhccCCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh-----c-ccc----cccccCCC-
Q 039518 458 WQLMNVNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR-----G-ILG----AFHDWCEP- 522 (617)
Q Consensus 458 ~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R-----G-lig----~~~~~~~~- 522 (617)
...+.+..+ .+|||+|||.|.++.+|... ..-|. -.|-. ..+..+-++ | +.. +..|..+.
T Consensus 92 ~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~---~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 92 VHEGDIFPG--ARVLEAGAGSGALTLSLLRAVGPAGQVI---SYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEE---EECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHcCCCCC--CEEEEEcccccHHHHHHHHHhCCCCEEE---EEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 344445555 47999999999999988653 23222 23333 444444443 4 211 22333332
Q ss_pred CCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhh
Q 039518 523 FSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLA 584 (617)
Q Consensus 523 f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~ 584 (617)
++ +.+||+|-++. -....+|-++-|+|+|||.+++... .+.+.++.+.+
T Consensus 167 ~~--~~~~D~v~~~~-----------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l 216 (280)
T 1i9g_A 167 LP--DGSVDRAVLDM-----------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEAL 216 (280)
T ss_dssp CC--TTCEEEEEEES-----------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CC--CCceeEEEECC-----------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 22 37899987421 1234789999999999999999743 33344444333
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0024 Score=66.89 Aligned_cols=118 Identities=12% Similarity=0.087 Sum_probs=67.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----ccc----cccc-ccCCCCCCC---CCccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GIL----GAFH-DWCEPFSTY---PRTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gli----g~~~-~~~~~f~ty---prtyDl~H~ 535 (617)
..|||+|||.|+|+.++..... .|+-+|.. ..+..+-++ |+- -+++ |..+..... ..+||+|=+
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 4799999999999988876654 44445554 444444332 331 1121 111111101 357999876
Q ss_pred ccc-ccccccCCCC------CChhhHHhhhhhcccCCceEEEe-------cChHHHHHHHhhhhcCCceEE
Q 039518 536 NHL-FSHYKNRGEV------CSLEDIMLEMDLIIRPQGFIIIR-------DEKSLITRIRDLAPKFLWDVE 592 (617)
Q Consensus 536 ~~~-~s~~~~~~~~------c~~~~~l~e~dRilRP~G~~i~~-------d~~~~~~~~~~~~~~~~W~~~ 592 (617)
+-- |..- ... =.+..++-++-|+|+|||++++. +...+.+-+++.++....++.
T Consensus 232 dPP~~~~~---~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 232 DPPKFGRG---THGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CCCSEEEC---TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred CCccccCC---chHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 432 2210 000 01347888999999999997774 223445555656666666654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0021 Score=62.17 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=71.2
Q ss_pred eeEEeccccccchhhhccCC---C--eEEEEeccCCCCchhHHHHh----hccc---ccc-cccCCCCCCCC-----Ccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL---P--VWVMNIVPISMKNTLSAIYN----RGIL---GAF-HDWCEPFSTYP-----RTY 530 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~---~--v~vmnv~p~~~~~~l~~~~~----RGli---g~~-~~~~~~f~typ-----rty 530 (617)
++|||+|||.|.++.+|... . |..+-+-| ..+..+-+ .|+- -+. .|..+.++..+ .+|
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDA----QPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCS----HHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCH----HHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 58999999999999888653 2 33332211 33333333 2441 111 12211111121 679
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC------------hHHHHHHHh----hhhcCCceEEEe
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE------------KSLITRIRD----LAPKFLWDVELH 594 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~------------~~~~~~~~~----~~~~~~W~~~~~ 594 (617)
|+|.++.. .-....++-++=|+|||||.+++.+. ......+++ +...=++++.+.
T Consensus 147 D~v~~d~~---------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 217 (229)
T 2avd_A 147 DVAVVDAD---------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLL 217 (229)
T ss_dssp EEEEECSC---------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cEEEECCC---------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEE
Confidence 99885433 22345788899999999999999532 122233333 344456766665
Q ss_pred eccccCCCceeEEEEEec
Q 039518 595 SLENREKKMESVLICRKK 612 (617)
Q Consensus 595 ~~e~~~~~~~~~l~~~k~ 612 (617)
.. .+.+++++|.
T Consensus 218 p~------~dGl~~~~k~ 229 (229)
T 2avd_A 218 PL------GDGLTLAFKI 229 (229)
T ss_dssp CS------TTCEEEEEEC
T ss_pred ec------CCceEEEEEC
Confidence 43 3568888873
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=65.40 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=66.3
Q ss_pred CCCCCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHH----hhcc---cccccccCCCCCCCCCccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIY----NRGI---LGAFHDWCEPFSTYPRTYD 531 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~----~RGl---ig~~~~~~~~f~typrtyD 531 (617)
+..+ .+|||+|||.|+|+..|... .|..+-+.| ..+..+- ..|+ .-+..|..+. +. +.+||
T Consensus 117 ~~~~--~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~----~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~-~~~~D 188 (272)
T 3a27_A 117 SNEN--EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP----TAYHYLCENIKLNKLNNVIPILADNRDV-EL-KDVAD 188 (272)
T ss_dssp CCTT--CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH----HHHHHHHHHHHHTTCSSEEEEESCGGGC-CC-TTCEE
T ss_pred cCCC--CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCEEEEECChHHc-Cc-cCCce
Confidence 4444 58999999999999888653 344433222 2332222 2233 2112222222 22 56899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-------HHHHHHHhhhhcCCceEEE
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK-------SLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~-------~~~~~~~~~~~~~~W~~~~ 593 (617)
+|-++... ....++.++-|+|+|||.+++.+.. ...+.++.+.+.+.+++..
T Consensus 189 ~Vi~d~p~----------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (272)
T 3a27_A 189 RVIMGYVH----------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLID 247 (272)
T ss_dssp EEEECCCS----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECCcc----------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeEE
Confidence 98644332 4557889999999999999998443 2334455555555555543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0015 Score=64.56 Aligned_cols=127 Identities=9% Similarity=0.118 Sum_probs=71.5
Q ss_pred eeeEEeccccccchhhhccC-----CCeEEEEeccCCCCchhHHH----Hhhcccc---c-ccccCCCCCCC------CC
Q 039518 468 IRNAMDMNAYCGGFAVALNS-----LPVWVMNIVPISMKNTLSAI----YNRGILG---A-FHDWCEPFSTY------PR 528 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~-----~~v~vmnv~p~~~~~~l~~~----~~RGlig---~-~~~~~~~f~ty------pr 528 (617)
-++|||+|||.|..+.+|.. ..|..+-+-| ..+.++ -+.|+-. + ..|..+.++.. +.
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~----~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDR----EAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCH----HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCH----HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence 36899999999998877753 2233332211 333333 2235421 1 12333322222 47
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-----------------hHHHHHHHh----hhhcC
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-----------------KSLITRIRD----LAPKF 587 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-----------------~~~~~~~~~----~~~~~ 587 (617)
+||+|-.+.--. ....++-++-|+|||||.+++.+- ......|++ +...=
T Consensus 147 ~fD~I~~d~~~~---------~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~ 217 (237)
T 3c3y_A 147 SYDFGFVDADKP---------NYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADP 217 (237)
T ss_dssp CEEEEEECSCGG---------GHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCT
T ss_pred CcCEEEECCchH---------HHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 899997553222 235778888999999999999641 001233333 34445
Q ss_pred CceEEEeeccccCCCceeEEEEEecc
Q 039518 588 LWDVELHSLENREKKMESVLICRKKF 613 (617)
Q Consensus 588 ~W~~~~~~~e~~~~~~~~~l~~~k~~ 613 (617)
++.+.+... .+.+++++|.+
T Consensus 218 ~~~~~~lp~------~dG~~~~~~~~ 237 (237)
T 3c3y_A 218 RIEIVHLPL------GDGITFCRRLY 237 (237)
T ss_dssp TEEEEEECS------TTCEEEEEECC
T ss_pred CeEEEEEEe------CCceEEEEEcC
Confidence 566555432 35688888863
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0031 Score=60.66 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=64.6
Q ss_pred eeEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHH--------Hhhccc--ccccccCCCCCCCCCccchhhcc
Q 039518 469 RNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAI--------YNRGIL--GAFHDWCEPFSTYPRTYDLLHAN 536 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~--------~~RGli--g~~~~~~~~f~typrtyDl~H~~ 536 (617)
..|||+|||.|.++.+|... ..-|.-|=+.. ..|..+ -.+|+- -..+.=.+.++.-+.+ |.+.
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~--~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~-- 103 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSRLVVALDADK--SRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH-- 103 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTEEEEEEESCG--GGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE--
T ss_pred CEEEEecCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE--
Confidence 57999999999999998765 33333332222 333322 134432 1121111223322244 6665
Q ss_pred ccccccccCC--CCCChhhHHhhhhhcccCCceEEEec------------------C-hHHHHHHHhhhhcCCceEEEe
Q 039518 537 HLFSHYKNRG--EVCSLEDIMLEMDLIIRPQGFIIIRD------------------E-KSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 537 ~~~s~~~~~~--~~c~~~~~l~e~dRilRP~G~~i~~d------------------~-~~~~~~~~~~~~~~~W~~~~~ 594 (617)
.+|+ |.... .-=+...+|-|+-|+|||||.+++.- . ....+.+++++..--|++...
T Consensus 104 ~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 104 VLMP-WGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp EESC-CHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEcc-chhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence 2221 10000 00011578999999999999999952 1 122334777777777876544
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0039 Score=63.45 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=73.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh-----cc-----------cccc-cccCCCCCCCCCcc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR-----GI-----------LGAF-HDWCEPFSTYPRTY 530 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R-----Gl-----------ig~~-~~~~~~f~typrty 530 (617)
++|||+|||.|+++..|...+.- +|+-.|-. .-+.++-++ |+ +-+. .|-.+-... +.+|
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~--~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CeEEEEcCCcCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 68999999999999999877541 22222322 333333222 22 1111 111111112 5789
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-----ChHHHHHHHhhhhcCCceEEEeec--cccCCCc
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-----EKSLITRIRDLAPKFLWDVELHSL--ENREKKM 603 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~ 603 (617)
|+|-++... .+. ....--...++-++-|+|+|||.+++.. ..+.+..+.+..+..--.+..... ..+ .+.
T Consensus 154 D~Ii~d~~~-~~~-~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~-~g~ 230 (281)
T 1mjf_A 154 DVIIADSTD-PVG-PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGY-ASP 230 (281)
T ss_dssp EEEEEECCC-CC------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTS-SSS
T ss_pred eEEEECCCC-CCC-cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCC-Cce
Confidence 999876432 110 0001012467889999999999999962 334445555444443333333221 112 234
Q ss_pred eeEEEEEec
Q 039518 604 ESVLICRKK 612 (617)
Q Consensus 604 ~~~l~~~k~ 612 (617)
..++++.|.
T Consensus 231 ~~~~~as~~ 239 (281)
T 1mjf_A 231 WAFLVGVKG 239 (281)
T ss_dssp EEEEEEEES
T ss_pred EEEEEeeCC
Confidence 667888875
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=67.53 Aligned_cols=95 Identities=11% Similarity=0.172 Sum_probs=61.4
Q ss_pred CCCeeeEEeccccccchhhhccC--CC--eEEEEeccCCCCchhHHHHhh-cccccccccCCCCCCCCCccchhhccccc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNS--LP--VWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~--~~--v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
....+.|+|+|||.|.++.+|.+ .. +.+.-+ | ..+..+-++ ++-=+-+|.-+++ |.. |+|.+..++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~---p~~-D~v~~~~vl 269 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P----HVISEAPQFPGVTHVGGDMFKEV---PSG-DTILMKWIL 269 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCCTTEEEEECCTTTCC---CCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H----HHHHhhhhcCCeEEEeCCcCCCC---CCC-CEEEehHHh
Confidence 45678999999999999999964 22 333333 1 111111111 2222345555544 444 999998888
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
-.| .+ -....+|-++=|.|+|||.++|.|
T Consensus 270 h~~---~d-~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 270 HDW---SD-QHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp GGS---CH-HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccC---CH-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 766 21 123478999999999999999964
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00052 Score=66.58 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCCCCeeeEEeccccccchhhhccCC------C-eEEEEeccCCCC-chhHHHHhh----cc-------cc-cccccCCC
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL------P-VWVMNIVPISMK-NTLSAIYNR----GI-------LG-AFHDWCEP 522 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~------~-v~vmnv~p~~~~-~~l~~~~~R----Gl-------ig-~~~~~~~~ 522 (617)
+..+ .+|||+|||.|.+++.|... | .-|..| |.. ..+..+-++ |+ +- +..|..+.
T Consensus 78 ~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 78 LKPG--SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGL---ERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp SCTT--CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEE---ESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred CCCC--CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEE---eCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc
Confidence 4554 58999999999999888542 1 122222 222 333333333 32 11 12233332
Q ss_pred CC---CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 523 FS---TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 523 f~---typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
++ .-+..||+|+++..+. .++-++-++|+|||.+++.-
T Consensus 153 ~~~~~~~~~~fD~I~~~~~~~------------~~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 153 NEEEKKELGLFDAIHVGASAS------------ELPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp CHHHHHHHCCEEEEEECSBBS------------SCCHHHHHHEEEEEEEEEEE
T ss_pred ccccCccCCCcCEEEECCchH------------HHHHHHHHhcCCCcEEEEEE
Confidence 10 1126899999776665 24678889999999999874
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00098 Score=68.85 Aligned_cols=101 Identities=10% Similarity=0.077 Sum_probs=63.3
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhccCC--C---eEEEEeccCCCCchhHHHHhh----cccc---cccccCCC
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL--P---VWVMNIVPISMKNTLSAIYNR----GILG---AFHDWCEP 522 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~---v~vmnv~p~~~~~~l~~~~~R----Glig---~~~~~~~~ 522 (617)
....+.+.+..+ .+|||+|||.|.++..|... + |..+-+. ++.+..+-++ |+-. ...|..+.
T Consensus 65 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s----~~~~~~a~~~~~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 65 ALFMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS----RKICEIAKRNVERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESC----HHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHhcCCCCc--CEEEEecCCchHHHHHHHHhcCCCCEEEEEECC----HHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence 334444556665 48999999999999888642 2 4333221 2555555444 5422 12333332
Q ss_pred CCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh
Q 039518 523 FSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 523 f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
.+ -+..||+|.+...+.+. .-++-|+|+|||.+++....
T Consensus 139 ~~-~~~~fD~Iv~~~~~~~~------------~~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 139 VP-EFSPYDVIFVTVGVDEV------------PETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CG-GGCCEEEEEECSBBSCC------------CHHHHHHEEEEEEEEEEBCB
T ss_pred cc-cCCCeEEEEEcCCHHHH------------HHHHHHhcCCCcEEEEEECC
Confidence 22 13689999988888743 24778999999999998543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.00084 Score=62.54 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=55.5
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHH----hhcc---ccc-ccccCCCCCCC---CCccchhhcc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIY----NRGI---LGA-FHDWCEPFSTY---PRTYDLLHAN 536 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~----~RGl---ig~-~~~~~~~f~ty---prtyDl~H~~ 536 (617)
.+|||+|||.|.++.++...+.. .|+-.|-. ..+..+- ..|+ +-+ ..|+.+..+.. +.+||+|-++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 58999999999998877655421 12222332 3333322 2233 112 22333322211 3689999877
Q ss_pred ccccccccCCCCCChhhHHhhh--hhcccCCceEEEecC
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEM--DLIIRPQGFIIIRDE 573 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~--dRilRP~G~~i~~d~ 573 (617)
..|.. -....++-++ -|+|+|||.+++...
T Consensus 124 ~~~~~-------~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 124 PPYAK-------QEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp CCGGG-------CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCCc-------hhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 66541 1234555555 999999999999743
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0072 Score=61.34 Aligned_cols=144 Identities=11% Similarity=0.082 Sum_probs=76.7
Q ss_pred CeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHHHHhh------cc----cccc-cccCCCCCCCCCccchhh
Q 039518 467 EIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAIYNR------GI----LGAF-HDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~~~R------Gl----ig~~-~~~~~~f~typrtyDl~H 534 (617)
.-++|||+|||.|+++..+.+. ++--+-+|=.+. .-+.++-+. ++ +-++ .|-.+-....+.+||+|-
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~-~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDG-KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCH-HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCH-HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3589999999999999999876 442222222221 233333221 21 1111 111111122257899998
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-----ChHHHHHHHhhhhcCCceEEEeec--cccCCCceeEE
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-----EKSLITRIRDLAPKFLWDVELHSL--ENREKKMESVL 607 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~~l 607 (617)
++...... ....-....++-++-|+|+|||.+++.. ..+.+..+.+.++..=-.+..... ...+.+...++
T Consensus 154 ~d~~~~~~--~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~ 231 (275)
T 1iy9_A 154 VDSTEPVG--PAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFT 231 (275)
T ss_dssp ESCSSCCS--CCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEE
T ss_pred ECCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEE
Confidence 76433211 0111112478889999999999999972 234445555544444333443321 11222345677
Q ss_pred EEEecc
Q 039518 608 ICRKKF 613 (617)
Q Consensus 608 ~~~k~~ 613 (617)
++.|++
T Consensus 232 ~ask~~ 237 (275)
T 1iy9_A 232 IGSKKY 237 (275)
T ss_dssp EEESSC
T ss_pred EeeCCC
Confidence 888763
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0039 Score=63.07 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=58.4
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccC-CCc--EEEeeecCCcHHHHHHHHH-hCCCc-EEEEe-cCCCCCCCCCCeeEEEe
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPL-DIQ--TMSFAPKDGHENQIQFALE-RGIGA-MISAL-STKQLPYPSSSFEMVHC 298 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~-gv~--~v~v~~iDis~~~lq~A~e-rg~~~-~~~~~-d~~~Lpf~d~sFDlV~~ 298 (617)
-+.++++|||+||+.|.|+.+.+++ ++. .-.+.++|++..- .... .|.++ .+..+ |+..++ ...+|+|+|
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P--~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLS 145 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEP--MLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLC 145 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCC--CCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEE
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCC--CcccCCCceEEEeeccCCccCCC--CCCCCEEEe
Confidence 4678999999999999999999886 221 0123344521000 0000 12222 33335 766543 567999998
Q ss_pred ccccc--ccccchH---HHHHHHHHhccCCe-EEEEEe
Q 039518 299 SRCRV--DWHANDG---ILLKEVDRVLRPNG-YFVYSA 330 (617)
Q Consensus 299 s~~l~--h~~~d~~---~~L~el~RvLrPGG-~Liis~ 330 (617)
-.+-- +..-|.. .+|.-+.++|+||| .|++-.
T Consensus 146 DMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKV 183 (269)
T 2px2_A 146 DIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKI 183 (269)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 43211 1111111 14666669999999 888855
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=64.92 Aligned_cols=151 Identities=9% Similarity=0.143 Sum_probs=87.4
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc---cc-c
Q 039518 445 TDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI---LG-A 515 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl---ig-~ 515 (617)
.+++.+.+.+-.+.. ...+ .+|||+|||.|.++.+|...|-+ +|+-.|-. ..+.++-++ |+ +- +
T Consensus 106 ~~te~lv~~~l~~~~---~~~~--~~vLDlG~GsG~~~~~la~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~v~~~ 178 (284)
T 1nv8_A 106 PETEELVELALELIR---KYGI--KTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVR 178 (284)
T ss_dssp TTHHHHHHHHHHHHH---HHTC--CEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred hhHHHHHHHHHHHhc---ccCC--CEEEEEeCchhHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEE
Confidence 345555555544433 1122 47999999999999988655321 22233333 444444332 44 22 2
Q ss_pred ccccCCCCCCCCCcc---chhhccccccc----------cc---cCCCCCChhhHHhhhh-hcccCCceEEEecChHHHH
Q 039518 516 FHDWCEPFSTYPRTY---DLLHANHLFSH----------YK---NRGEVCSLEDIMLEMD-LIIRPQGFIIIRDEKSLIT 578 (617)
Q Consensus 516 ~~~~~~~f~typrty---Dl~H~~~~~s~----------~~---~~~~~c~~~~~l~e~d-RilRP~G~~i~~d~~~~~~ 578 (617)
..||.++++ .+| |+|-++--+.. |. ..-..+.-..++-++= +.|+|||++++--..+.-+
T Consensus 179 ~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~ 255 (284)
T 1nv8_A 179 KGEFLEPFK---EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVE 255 (284)
T ss_dssp ESSTTGGGG---GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHH
T ss_pred ECcchhhcc---cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHH
Confidence 346665443 578 99987622221 00 0001122236788888 9999999999975556667
Q ss_pred HHHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 579 RIRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 579 ~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
.++++.+.. ....| -.+.++++++.++
T Consensus 256 ~v~~~~~~~---~~~~D----~~g~~R~~~~~~k 282 (284)
T 1nv8_A 256 ELKKIVSDT---VFLKD----SAGKYRFLLLNRR 282 (284)
T ss_dssp HHTTTSTTC---EEEEC----TTSSEEEEEEECC
T ss_pred HHHHHHHhC---Ceecc----cCCCceEEEEEEc
Confidence 788777665 22222 2345888888775
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.00062 Score=71.22 Aligned_cols=97 Identities=14% Similarity=0.170 Sum_probs=58.8
Q ss_pred eeEEeccccccchhhhccCC----CeEEEEeccCCCC-chhHHHHh----hcccccccccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMK-NTLSAIYN----RGILGAFHDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~-~~l~~~~~----RGlig~~~~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|||+|||.|.++.+|... .|..+ |.. .-+..+-+ .|+-..+ -+...++.-+.+||+|-++..|
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~v-----D~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~ 271 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKIRLTLC-----DVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPF 271 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTCBCEEE-----ESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCC
T ss_pred CeEEEecCccCHHHHHHHHHCCCCEEEEE-----ECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCc
Confidence 47999999999999888543 23332 332 33333332 2432211 1222233225899999998877
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
..-. ....-....++-|+-|+|+|||.+++-.
T Consensus 272 ~~g~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 272 HDGM-QTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp CSSS-HHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccCc-cCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 5210 0011124578999999999999999964
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.003 Score=63.00 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=53.5
Q ss_pred eeEEeccccccchhhhccCC---CeEEEEeccCCCCchhHHHH----hhccc---ccc-cccCCCCCCC------CCccc
Q 039518 469 RNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMKNTLSAIY----NRGIL---GAF-HDWCEPFSTY------PRTYD 531 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~~~l~~~~----~RGli---g~~-~~~~~~f~ty------prtyD 531 (617)
++|||+|||.|.++..|... ..-|..+=... ..+.++- +.|+- -+. .|..+..+.. +.+||
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~--~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 68999999999998877532 22222222211 2232322 23541 121 1222222222 47899
Q ss_pred hhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 532 LLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+|-++.-.. ....++-++-|+|||||.+++.+
T Consensus 159 ~V~~d~~~~---------~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDADKD---------NYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSCST---------THHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCchH---------HHHHHHHHHHHhCCCCeEEEEec
Confidence 997543221 34577888999999999999863
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0052 Score=61.37 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=62.6
Q ss_pred ccCCCCCeeeEEeccccccchhhhccC-----CCeEEEEeccCCCCchhHHHHhhc-ccccccccCCCC--CCCCCccch
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNS-----LPVWVMNIVPISMKNTLSAIYNRG-ILGAFHDWCEPF--STYPRTYDL 532 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~-----~~v~vmnv~p~~~~~~l~~~~~RG-lig~~~~~~~~f--~typrtyDl 532 (617)
|+|++|. +|||+|||.|.|+.+|.+ -.|....+.|.-...-...+-+++ +.-+..|-+.+- +.-+.++|+
T Consensus 73 l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 73 LPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred cCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 4478885 899999999999999864 236666654432221222233444 444555555432 112367887
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.++-.+. =....++.|+-|+|+|||.++|.
T Consensus 151 Vf~d~~~~--------~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 151 LYADVAQP--------EQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp EEECCCCT--------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccCC--------hhHHHHHHHHHHhccCCCEEEEE
Confidence 76432111 12346889999999999999986
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0027 Score=69.79 Aligned_cols=93 Identities=9% Similarity=0.103 Sum_probs=57.9
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCCchhHH----HHhhcc---cccc-cccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMKNTLSA----IYNRGI---LGAF-HDWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~~~l~~----~~~RGl---ig~~-~~~~~~f~typrtyDl~H~~~~~ 539 (617)
..|||+|||.|.++..|...+. -|.-|=. ...+.. +.+.|+ |-++ .|+.+ + .+|..||+|-+..++
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~~~V~gvD~---s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGARKIYAVEA---STMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPMG 234 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTCSEEEEEEC---HHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCCH
T ss_pred CEEEEecCcccHHHHHHHHcCCCEEEEEEc---HHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCch
Confidence 5899999999999988876543 2322222 112222 333455 2222 33433 2 246789999987765
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
.++ . .-.+...+.++-|+|+|||.+++
T Consensus 235 ~~~---~-~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YML---F-NERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHH---T-CHHHHHHHHHGGGGEEEEEEEES
T ss_pred Hhc---C-cHHHHHHHHHHHHhcCCCCEEEE
Confidence 543 1 11345677799999999999985
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.011 Score=60.83 Aligned_cols=134 Identities=12% Similarity=0.076 Sum_probs=74.4
Q ss_pred cCCCCCeeeEEeccc------cccc-hhhhccC--CCeEEEEeccCCCCchhHHHHhhcccc-cccccCCCCCCCCCccc
Q 039518 462 NVNETEIRNAMDMNA------YCGG-FAVALNS--LPVWVMNIVPISMKNTLSAIYNRGILG-AFHDWCEPFSTYPRTYD 531 (617)
Q Consensus 462 ~~~~~~~Rn~mDm~~------~~g~-faa~l~~--~~v~vmnv~p~~~~~~l~~~~~RGlig-~~~~~~~~f~typrtyD 531 (617)
.+..+ ..|||+|| |.|+ .+|.+.. -.|.-+-+-|. + + ++-= +..|+.+. + ++.+||
T Consensus 60 ~l~~g--~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-----v----~-~v~~~i~gD~~~~-~-~~~~fD 125 (290)
T 2xyq_A 60 AVPYN--MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----V----S-DADSTLIGDCATV-H-TANKWD 125 (290)
T ss_dssp CCCTT--CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----B----C-SSSEEEESCGGGC-C-CSSCEE
T ss_pred CCCCC--CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-----C----C-CCEEEEECccccC-C-ccCccc
Confidence 35555 46999999 4476 3333443 33555555444 1 1 3222 44566542 2 247899
Q ss_pred hhhccccccc---cc--cCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCc-eEEEeeccccCCCce
Q 039518 532 LLHANHLFSH---YK--NRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLW-DVELHSLENREKKME 604 (617)
Q Consensus 532 l~H~~~~~s~---~~--~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W-~~~~~~~e~~~~~~~ 604 (617)
+|.++..... +. .....-.+..+|-|+-|+|||||.+++... .....++.++++...+ .+... -......|
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~--asr~~s~e 203 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT--NVNASSSE 203 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE--GGGTTSSC
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE--EcCCCchh
Confidence 9997643221 00 001111234788999999999999999531 1122356666666634 44444 12333468
Q ss_pred eEEEEEe
Q 039518 605 SVLICRK 611 (617)
Q Consensus 605 ~~l~~~k 611 (617)
-+|+++.
T Consensus 204 ~~lv~~~ 210 (290)
T 2xyq_A 204 AFLIGAN 210 (290)
T ss_dssp EEEEEEE
T ss_pred eEEecCC
Confidence 8888765
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.002 Score=61.95 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=56.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc--cccc-cccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI--LGAF-HDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl--ig~~-~~~~~~f~typrtyDl~H~~~~~s 540 (617)
.+|||+|||.|.++..+.....- .|+-.|.. ..+..+-+ .|+ +-++ .|..+..+.-+.+||+|=++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 57999999999998875544321 33334444 44444432 233 1112 232222232246899998665543
Q ss_pred ccccCCCCCChhhHHhhhh--hcccCCceEEEecCh
Q 039518 541 HYKNRGEVCSLEDIMLEMD--LIIRPQGFIIIRDEK 574 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~d--RilRP~G~~i~~d~~ 574 (617)
. -....++-++- |+|+|||.+++....
T Consensus 134 -----~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 -----R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp -----T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred -----C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 1 12345666664 579999999998554
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0069 Score=64.63 Aligned_cols=114 Identities=11% Similarity=0.138 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcc----CCCCCeeeEEeccccccchh---hhccCCCeEEEEeccCCCCchhHHHHhhcc---cccccccC
Q 039518 451 QDQVRHYWQLMN----VNETEIRNAMDMNAYCGGFA---VALNSLPVWVMNIVPISMKNTLSAIYNRGI---LGAFHDWC 520 (617)
Q Consensus 451 ~~~v~~y~~~~~----~~~~~~Rn~mDm~~~~g~fa---a~l~~~~v~vmnv~p~~~~~~l~~~~~RGl---ig~~~~~~ 520 (617)
+.|...|.+.|- +-.| ..|||+|||.|-++ |..-.+.|..+-.-|. ......++-+.|+ |-+++.--
T Consensus 65 ~~Rt~aY~~Ai~~~~~~~~~--k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~-~~~a~~~~~~n~~~~~i~~i~~~~ 141 (376)
T 4hc4_A 65 RVRTDAYRLGILRNWAALRG--KTVLDVGAGTGILSIFCAQAGARRVYAVEASAI-WQQAREVVRFNGLEDRVHVLPGPV 141 (376)
T ss_dssp HHHHHHHHHHHHTTHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCT
T ss_pred HHHHHHHHHHHHhCHHhcCC--CEEEEeCCCccHHHHHHHHhCCCEEEEEeChHH-HHHHHHHHHHcCCCceEEEEeeee
Confidence 345566877652 2234 36999999999764 3333455665543221 1123345566676 44554444
Q ss_pred CCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 521 EPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 521 ~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+.+. .|.-+|+|=+.-+.+.. -.--.+..++-..||.|+|||.+|-+
T Consensus 142 ~~~~-lpe~~DvivsE~~~~~l---~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 142 ETVE-LPEQVDAIVSEWMGYGL---LHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTCC-CSSCEEEEECCCCBTTB---TTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred eeec-CCccccEEEeecccccc---cccchhhhHHHHHHhhCCCCceECCc
Confidence 4443 36789987643222211 22335678899999999999998843
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0046 Score=63.49 Aligned_cols=142 Identities=10% Similarity=0.054 Sum_probs=73.1
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh------cc----ccc-ccccCCCCCCCCCccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR------GI----LGA-FHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R------Gl----ig~-~~~~~~~f~typrtyDl~H~ 535 (617)
++|||+|||.|+++..+.+. ++. +|+-+|-. .-+.++-++ |+ +-+ ..|..+.....+.+||+|-+
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVE--KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCS--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 78999999999999999876 432 22222322 333333221 21 111 11221112223578999986
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEec-----ChHHHHHHHhhhhcCCceEEEee--ccccCCCceeEEE
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-----EKSLITRIRDLAPKFLWDVELHS--LENREKKMESVLI 608 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~--~e~~~~~~~~~l~ 608 (617)
+. +..+......-....++-++-|+|+|||.+++.- ..+....+.+..+..--.+.... ....+.+...+++
T Consensus 170 d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~ 248 (296)
T 1inl_A 170 DS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTF 248 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEE
T ss_pred cC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEE
Confidence 53 2211000001112478889999999999999972 22333343333333323333332 1222334466888
Q ss_pred EEecc
Q 039518 609 CRKKF 613 (617)
Q Consensus 609 ~~k~~ 613 (617)
|.|++
T Consensus 249 as~~~ 253 (296)
T 1inl_A 249 ASKGI 253 (296)
T ss_dssp EESSC
T ss_pred ecCCC
Confidence 88864
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0076 Score=62.00 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=73.4
Q ss_pred eeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh------cc----cc-cccccCCCCCC-CCCccchh
Q 039518 468 IRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR------GI----LG-AFHDWCEPFST-YPRTYDLL 533 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R------Gl----ig-~~~~~~~~f~t-yprtyDl~ 533 (617)
-++|||+|||.|+++..|.+. ++-- |+-.|-. .-+.++-++ ++ +- +..|..+-... -+.+||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~--v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEH--CDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCE--EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCE--EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 378999999999999999866 3321 1222222 333333222 11 11 11222211111 14789999
Q ss_pred hccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-----hHHHHHHHhhhhcCCce-EEEeec--cccCCCcee
Q 039518 534 HANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-----KSLITRIRDLAPKFLWD-VELHSL--ENREKKMES 605 (617)
Q Consensus 534 H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~-~~~~~~--e~~~~~~~~ 605 (617)
-++...... ....---..++-++-|+|+|||.+++... ......+.+.++..-+. +..... ...+.+.-.
T Consensus 174 i~d~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~ 251 (304)
T 3bwc_A 174 IIDTTDPAG--PASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIG 251 (304)
T ss_dssp EEECC-----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCE
T ss_pred EECCCCccc--cchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceE
Confidence 976433211 00111114778899999999999999632 23455566655555443 333221 222234456
Q ss_pred EEEEEec
Q 039518 606 VLICRKK 612 (617)
Q Consensus 606 ~l~~~k~ 612 (617)
.+++.|.
T Consensus 252 f~~as~~ 258 (304)
T 3bwc_A 252 TLVCSKK 258 (304)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 7777774
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.07 Score=54.67 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=54.8
Q ss_pred CcEEEEecC-CCCC-CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHH
Q 039518 275 GAMISALST-KQLP-YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTT 352 (617)
Q Consensus 275 ~~~~~~~d~-~~Lp-f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~ 352 (617)
++.+..+++ +.+| +++++||+|+.=. ...+.....|..+...|+|||++++.+. .+ ....-+.+.++.+
T Consensus 190 ~I~li~Gda~etL~~~~~~~~d~vfIDa---D~y~~~~~~Le~~~p~L~pGGiIv~DD~--~~----~~G~~~Av~Ef~~ 260 (282)
T 2wk1_A 190 QVRFLPGWFKDTLPTAPIDTLAVLRMDG---DLYESTWDTLTNLYPKVSVGGYVIVDDY--MM----CPPCKDAVDEYRA 260 (282)
T ss_dssp TEEEEESCHHHHSTTCCCCCEEEEEECC---CSHHHHHHHHHHHGGGEEEEEEEEESSC--TT----CHHHHHHHHHHHH
T ss_pred ceEEEEeCHHHHHhhCCCCCEEEEEEcC---CccccHHHHHHHHHhhcCCCEEEEEcCC--CC----CHHHHHHHHHHHH
Confidence 478888875 3344 3457899998532 1222345689999999999999988553 11 1111234666777
Q ss_pred HcCceEEEE--eeeeEEEeec
Q 039518 353 AMCWKLIAR--KIQTAIWIKE 371 (617)
Q Consensus 353 ~~gw~~v~~--~~~~~IwqKp 371 (617)
..+++.... ....+.|+|+
T Consensus 261 ~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 261 KFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp HTTCCSCCEECSSSCEEEECC
T ss_pred hcCCceEEEEecCEEEEEEeC
Confidence 777554333 3346777775
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.007 Score=62.59 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=58.5
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCC--C-eEEEEeccCCCC-chhHHHHhh----ccc--ccc-cccCCCCCCCCCc
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSL--P-VWVMNIVPISMK-NTLSAIYNR----GIL--GAF-HDWCEPFSTYPRT 529 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~--~-v~vmnv~p~~~~-~~l~~~~~R----Gli--g~~-~~~~~~f~typrt 529 (617)
+++..+ ..|||+|||.|+++.+|... + --| +-.|-. ..+..+-++ |+- -+. +|.. .++.++.+
T Consensus 114 l~~~~g--~~VLDlg~G~G~~t~~la~~~~~~~~v---~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~-~~~~~~~~ 187 (315)
T 1ixk_A 114 LDPKPG--EIVADMAAAPGGKTSYLAQLMRNDGVI---YAFDVDENRLRETRLNLSRLGVLNVILFHSSSL-HIGELNVE 187 (315)
T ss_dssp HCCCTT--CEEEECCSSCSHHHHHHHHHTTTCSEE---EEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG-GGGGGCCC
T ss_pred hCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEE---EEEcCCHHHHHHHHHHHHHhCCCeEEEEECChh-hccccccc
Confidence 345555 47999999999998888642 1 222 223333 444444443 542 122 2221 22224568
Q ss_pred cchhhcccccccc---ccCCC---CCC----------hhhHHhhhhhcccCCceEEEe
Q 039518 530 YDLLHANHLFSHY---KNRGE---VCS----------LEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 530 yDl~H~~~~~s~~---~~~~~---~c~----------~~~~l~e~dRilRP~G~~i~~ 571 (617)
||+|-++--.|.. ....+ +=. -..+|-++-|+|||||.+++.
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s 245 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 9999875332210 00000 000 037888999999999999995
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0018 Score=67.64 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=60.8
Q ss_pred CeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHh-hcccccccccCCCCCCCCCccchhhccccccc
Q 039518 467 EIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYN-RGILGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~-RGlig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
...+|||+|||.|.++.+|.+. .+.++-+ | ..+..+-+ .++-=+-+|..+++ |. ||+|.+..++.+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~---p~-~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P----QVVENLSGSNNLTYVGGDMFTSI---PN-ADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCBTTEEEEECCTTTCC---CC-CSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H----HHHhhcccCCCcEEEeccccCCC---CC-ccEEEeehhhcc
Confidence 4579999999999999999743 2444433 2 11111111 12222334554443 44 999999999887
Q ss_pred cccCCCCCChhhHHhhhhhcccC---CceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRP---QGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP---~G~~i~~d 572 (617)
| .+. ....+|-++=|+|+| ||.++|.|
T Consensus 259 ~---~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 259 W---TDK-DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp S---CHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred C---CHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 6 221 123789999999999 99999874
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0079 Score=63.05 Aligned_cols=101 Identities=10% Similarity=0.100 Sum_probs=58.0
Q ss_pred CeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh------cc----cc-cccccCCCCCCCC-Cccch
Q 039518 467 EIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR------GI----LG-AFHDWCEPFSTYP-RTYDL 532 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R------Gl----ig-~~~~~~~~f~typ-rtyDl 532 (617)
.-++|||+|||.|+++..|... ++.- |+-.|-. .-+.++-++ |+ +- +..|..+..+.++ .+||+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~--V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQ--IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCE--EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCE--EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3479999999999999999876 3322 2222332 333333322 32 11 2233332222233 78999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|-++.. ..+. ....-....++-++-|+|+|||.+++.
T Consensus 198 Ii~d~~-~p~~-~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSS-DPIG-PAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCC-CTTS-GGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCC-CccC-cchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 987542 1110 001100247888999999999999996
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.009 Score=60.54 Aligned_cols=101 Identities=8% Similarity=0.024 Sum_probs=60.2
Q ss_pred CCeeeEEeccccc---cchhhhccC--CCeEEEEeccCCCC-chhHHHHhh----ccc-ccccccCCC-----C----CC
Q 039518 466 TEIRNAMDMNAYC---GGFAVALNS--LPVWVMNIVPISMK-NTLSAIYNR----GIL-GAFHDWCEP-----F----ST 525 (617)
Q Consensus 466 ~~~Rn~mDm~~~~---g~faa~l~~--~~v~vmnv~p~~~~-~~l~~~~~R----Gli-g~~~~~~~~-----f----~t 525 (617)
..++.|||+|||. |.++..+.. ... .|+=.|-. ..|..+-++ +-+ =+-.|..+. . .+
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~---~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 152 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDA---RVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRM 152 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCC---EEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhcc
Confidence 3578999999999 988655532 122 22222332 444443332 111 111222211 0 12
Q ss_pred CC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 526 YP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 526 yp-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
+| .+||+|=+.++|-++ .+. ....+|-|+-|+|+|||++++.+.
T Consensus 153 ~d~~~~d~v~~~~vlh~~---~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 153 IDFSRPAAIMLVGMLHYL---SPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CCTTSCCEEEETTTGGGS---CTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCCEEEEEechhhhC---CcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 33 478988887777755 333 677899999999999999999853
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0024 Score=63.15 Aligned_cols=47 Identities=6% Similarity=0.141 Sum_probs=31.4
Q ss_pred CccchhhccccccccccCCC---CCChhhHHhhhhhcccCCceEEEecCh
Q 039518 528 RTYDLLHANHLFSHYKNRGE---VCSLEDIMLEMDLIIRPQGFIIIRDEK 574 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~---~c~~~~~l~e~dRilRP~G~~i~~d~~ 574 (617)
..||+|-++-.|........ .-....++-++-|+|+|||++++.+..
T Consensus 167 ~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 167 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 48999998766542200000 112347888999999999999996554
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.089 Score=54.19 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=73.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHH---HHHHhCCC-cEEEEe-cCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQ---FALERGIG-AMISAL-STKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq---~A~erg~~-~~~~~~-d~~~Lpf~d~sFDlV~~s~ 300 (617)
+.++.+|||+||++|.|+.+.+.+.- +..|.++|+...--+ ..+..+-+ +.+... |+..++. ..+|+|+|--
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDi 168 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDI 168 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECC
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEEC
Confidence 45677899999999999998776632 236777787654100 00001111 444444 5556653 6699999864
Q ss_pred cccccccchH-------HHHHHHHHhccCC-eEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 301 CRVDWHANDG-------ILLKEVDRVLRPN-GYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 301 ~l~h~~~d~~-------~~L~el~RvLrPG-G~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
. .. ..++. .+|.-+.+.|++| |-|++-+-. +..+..-+.++.+-...|=.++.
T Consensus 169 g-eS-s~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~-----pY~~~v~e~l~~lq~~fgg~lvr 229 (321)
T 3lkz_A 169 G-ES-SSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC-----PYMPKVIEKMELLQRRYGGGLVR 229 (321)
T ss_dssp C-CC-CSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC-----TTSHHHHHHHHHHHHHHCCEEEC
T ss_pred c-cC-CCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC-----CCChHHHHHHHHHHHHhCCEeEe
Confidence 3 22 22221 2556667889999 899886532 22333335566666666544443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.011 Score=61.68 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=71.5
Q ss_pred eeEEeccccccchhhhccC-----CCeEEEEeccCCCCchhHHHH----hhcc--cccccccCCCCCCCCCccchhhccc
Q 039518 469 RNAMDMNAYCGGFAVALNS-----LPVWVMNIVPISMKNTLSAIY----NRGI--LGAFHDWCEPFSTYPRTYDLLHANH 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~-----~~v~vmnv~p~~~~~~l~~~~----~RGl--ig~~~~~~~~f~typrtyDl~H~~~ 537 (617)
..|||++||.|+|+..+.. ..|+-.-+-| ..+..+- ..|+ |-+.+.=.+.++.....||+|-++-
T Consensus 205 ~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~----~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np 280 (354)
T 3tma_A 205 MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDE----KRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP 280 (354)
T ss_dssp CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCH----HHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCH----HHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence 6899999999999765543 3444332222 3333333 2343 2222111111222225689999865
Q ss_pred cccccccCCCCCC----hhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEEEee-ccccCCCceeEEEEEe
Q 039518 538 LFSHYKNRGEVCS----LEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVELHS-LENREKKMESVLICRK 611 (617)
Q Consensus 538 ~~s~~~~~~~~c~----~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~-~e~~~~~~~~~l~~~k 611 (617)
-|..- ....-. ...++-++-|+|+|||.+++-..... -++++.+ ..|+..... ..+|.. .-.+++.+|
T Consensus 281 Pyg~r--~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~~~~~l~~g~l-~~~i~vl~r 353 (354)
T 3tma_A 281 PHGLR--LGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALRHARVVEQGGV-YPRVFVLEK 353 (354)
T ss_dssp CSCC------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEEEEEECCBTTB-CCEEEEEEE
T ss_pred CCcCc--cCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEEEEEEEEeCCE-EEEEEEEEc
Confidence 55411 011111 14688899999999999988644332 2455556 777764432 223333 245666665
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0018 Score=84.00 Aligned_cols=103 Identities=10% Similarity=0.190 Sum_probs=48.4
Q ss_pred CCCeEEEECCCCcHHHHHhccC----CCcEEEeeecCCcHHHHHHHHHhCC--CcEEEEecCCCC-CCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPL----DIQTMSFAPKDGHENQIQFALERGI--GAMISALSTKQL-PYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~----gv~~v~v~~iDis~~~lq~A~erg~--~~~~~~~d~~~L-pf~d~sFDlV~~s~ 300 (617)
+..+|||||.|+|..+..+.+. .....+++-.|++....+.|+++.. .+.....|.+.. ++..++||+|++++
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4668999999999765443321 1123467777888766655555421 222222233332 34566799999988
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++ |-..+....|.++.++|||||++++...
T Consensus 1320 vl-~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1320 AL-ATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp C---------------------CCEEEEEEC
T ss_pred cc-cccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 66 4455788899999999999999988753
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.034 Score=52.72 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=69.5
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc-cccccccCCCCCCCCCccchhhcccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI-LGAFHDWCEPFSTYPRTYDLLHANHLFSHY 542 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl-ig~~~~~~~~f~typrtyDl~H~~~~~s~~ 542 (617)
.+|||+|||.|.|+.+|...+.- +|+-.|-. ..+..+-++ |+ +-++ +..+..+|.+||+|-++.-|...
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~---~~d~~~~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVF---IGDVSEFNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEE---ESCGGGCCCCCSEEEECCCCSSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEE---ECchHHcCCCCCEEEEcCCCccc
Confidence 58999999999999988765321 12222333 344444333 32 1111 22222346799999988877643
Q ss_pred ccCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCCceEEEe
Q 039518 543 KNRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 543 ~~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
.. -....++-++-|+| ||.+++. ...+..+.+.+++....|++...
T Consensus 126 ---~~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 126 ---RK-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp ---ST-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred ---cC-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 22 22345677778888 6655544 36677777888887777776544
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0032 Score=63.91 Aligned_cols=94 Identities=7% Similarity=0.174 Sum_probs=57.1
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCC-C-chhHHHHhh---------cc-------cc-cccccCCCCCCC---
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISM-K-NTLSAIYNR---------GI-------LG-AFHDWCEPFSTY--- 526 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~-~-~~l~~~~~R---------Gl-------ig-~~~~~~~~f~ty--- 526 (617)
.+|||+|||.|.++.+|..... -.|+-.|- . ..+..+-++ |+ +- ...+|.......
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 5899999999999887765542 12233333 2 334333222 22 21 225677654322
Q ss_pred --CCccchhhccccccccccCCCCCChhhHHhhhhhccc---C--CceEEE
Q 039518 527 --PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIR---P--QGFIII 570 (617)
Q Consensus 527 --prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilR---P--~G~~i~ 570 (617)
+.+||+|-+..++-+. -....++-++.|+|+ | ||.+++
T Consensus 159 ~~~~~fD~Ii~~dvl~~~------~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFH------QAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HSCSSBSEEEEESCCSCG------GGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred ccCCCCCEEEEeCcccCh------HHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 3789999775554321 235678999999999 9 996544
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0086 Score=62.27 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=74.8
Q ss_pred eeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHhh------cc----cc-cccccCCCCCCCCCccchhhc
Q 039518 469 RNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYNR------GI----LG-AFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~R------Gl----ig-~~~~~~~~f~typrtyDl~H~ 535 (617)
++|||+|||.|+++.++... +..- |+-.|-. .-+.++-++ |+ +- +..|..+.....+.+||+|-+
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~~~--v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSVEN--IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTCCE--EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHcCCCCE--EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 78999999999999999876 4322 2222332 334443332 11 11 122222222222578999987
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEec-----ChHHHHHHHhhhhcCCceEEEeec--cccCCCceeEEE
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-----EKSLITRIRDLAPKFLWDVELHSL--ENREKKMESVLI 608 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~~l~ 608 (617)
+. +..+.. .....-..++-++-|+|+|||.+++.. ..+.+.++.+..+..--.+..... ...+.+.-..++
T Consensus 196 d~-~~p~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~ 273 (321)
T 2pt6_A 196 DS-SDPIGP-AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC 273 (321)
T ss_dssp EC-CCSSSG-GGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred CC-cCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence 53 221100 000011477889999999999999952 234444554444444334443321 122222234677
Q ss_pred EEecc
Q 039518 609 CRKKF 613 (617)
Q Consensus 609 ~~k~~ 613 (617)
+.|.+
T Consensus 274 as~~~ 278 (321)
T 2pt6_A 274 CSKTD 278 (321)
T ss_dssp EESST
T ss_pred eeCCC
Confidence 77753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 617 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-08 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 9e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 7e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 3e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 9e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.002 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 0.003 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.003 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.003 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 53.2 bits (126), Expect = 2e-08
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 2/127 (1%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
VLD+ CG + L + + + + + + +
Sbjct: 45 VLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN 104
Query: 292 SFEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVN 349
F+ V + + + L +V L+P G F+ P + +D P++W++
Sbjct: 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKG 164
Query: 350 LTTAMCW 356
+
Sbjct: 165 EEKLVIM 171
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.7 bits (107), Expect = 9e-06
Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 18/125 (14%)
Query: 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGH---------ENQIQFALERGI 274
LR G +VLDV CG S L+ S D + + A ++ +
Sbjct: 52 LRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWV 111
Query: 275 GAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGI--------LLKEVDRVLRPNGYF 326
+ L+ + F+ V C H D LK + ++RP G
Sbjct: 112 IEEANWLTLDKDVPAGDGFDAVICL-GNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 170
Query: 327 VYSAP 331
V
Sbjct: 171 VIDHR 175
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 42.6 bits (99), Expect = 7e-05
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 20/178 (11%)
Query: 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQ 267
+Y+ L N + T + ++D GCG L+PL + + D E +
Sbjct: 13 DYVSFLVNTVWKITKPVH------IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 66
Query: 268 FALERGIGAMISALSTKQLPYPSSSFEMVHCSRCR--VDWHANDGILLKEVDRVLRPNGY 325
A E + + + + C + +L+++ ++ G
Sbjct: 67 EARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGK 126
Query: 326 FV------------YSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQTAIWIKE 371
+ Y + + + KL T K ++ I++ E
Sbjct: 127 IICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSE 184
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 3/129 (2%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
LD+ CG + + L P T + ++ + A +
Sbjct: 41 YLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR 100
Query: 292 SFEMVHCSRCRVDWHANDGIL---LKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLV 348
F+++ C ++ + L K V L+ G F++ Y+ +
Sbjct: 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYD 160
Query: 349 NLTTAMCWK 357
+ W+
Sbjct: 161 DDEVFYYWE 169
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.8 bits (89), Expect = 9e-04
Identities = 34/225 (15%), Positives = 60/225 (26%), Gaps = 21/225 (9%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
VLD+G G + P + + + + P
Sbjct: 20 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 79
Query: 292 SFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNL 350
+ H +D ++EV RVL+ +G F+ A + D+ VN
Sbjct: 80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDP-----VLDEFVNH 134
Query: 351 TTAMCWKLIARKIQTAIWIKEENQSCLLHNADLKLIDVCDAVDEFKPSWNTPLGNCVQIS 410
+ R+ + W + L D+ WN P+ I
Sbjct: 135 LNRLRDPSHVRESSLSEWQA------MFSANQLAYQDIQ--------KWNLPIQYDSWIK 180
Query: 411 SAQTNSQKL-PPRPERLSVYSESLSRIGITQEEFTTDTSFWQDQV 454
T + + E+ IT + SF +
Sbjct: 181 RGGTPADREKQIITHLNHASDEARDTFCITLNQNGQPISFCLKAI 225
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 38.9 bits (90), Expect = 0.001
Identities = 11/100 (11%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
+L+VG G + S+++L + + E+ ++ A++ +
Sbjct: 89 ILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD 148
Query: 292 SFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331
D + ++++ +++P + P
Sbjct: 149 FISDQMYDAVIADI-PDPWNHVQKIASMMKPGSVATFYLP 187
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 0.002
Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 6/105 (5%)
Query: 231 QVLDVGCGVASFSAFLL---PLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP 287
++LD+G G + + + + + + + +
Sbjct: 36 RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95
Query: 288 YPSSSFEMVHCSRCRVDWHAND-GILLKEVDRVLRPNGYFVYSAP 331
+ ++ C W A + + + L+P G + P
Sbjct: 96 VANEKCDVAAC--VGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 138
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 37.4 bits (85), Expect = 0.003
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
VLD+G G +S FL + + P + + + + LP+PS
Sbjct: 46 VLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAK----AEDLPFPSG 101
Query: 292 SFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAY 334
+FE V + + N E+ RVL P+G + + Y
Sbjct: 102 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 144
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.4 bits (86), Expect = 0.003
Identities = 14/121 (11%), Positives = 39/121 (32%), Gaps = 4/121 (3%)
Query: 212 RLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE 271
+L + + ++L +G + + + + + + +A + ++ L+
Sbjct: 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYA-IEYAPRIMRELLD 116
Query: 272 R---GIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVY 328
+ + ++ E V V IL+K L+ GY +
Sbjct: 117 ACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMI 176
Query: 329 S 329
+
Sbjct: 177 A 177
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 36.9 bits (84), Expect = 0.003
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 2/101 (1%)
Query: 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSS 291
LD+GCG S +L ++ ++ +
Sbjct: 34 TLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD 93
Query: 292 SFEMVHCSRCRVDWHANDGI--LLKEVDRVLRPNGYFVYSA 330
S + + I L+ + R +P GY + A
Sbjct: 94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.73 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.71 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.69 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.67 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.66 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.64 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.62 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.62 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.62 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.58 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.57 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.55 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.55 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.53 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.51 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.48 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.48 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.47 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.44 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.42 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.41 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.4 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.39 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.38 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.37 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.36 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.35 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.35 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.32 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.31 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.3 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.27 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.27 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.26 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.24 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.21 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.17 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.15 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.14 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.1 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.06 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.05 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.04 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.0 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.99 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.96 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.96 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.89 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.8 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.66 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.66 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.65 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.64 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.61 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.53 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.52 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.5 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.49 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.46 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.44 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.44 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.35 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.33 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.33 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.32 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.3 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.24 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.2 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.18 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.18 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.11 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.09 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.06 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.06 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.05 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.03 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.03 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.02 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.01 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.99 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 97.96 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 97.96 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.95 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 97.94 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 97.91 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 97.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.88 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.79 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 97.79 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 97.78 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.77 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 97.74 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.72 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 97.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.68 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 97.67 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 97.65 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.63 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.59 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.54 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 97.51 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 97.47 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 97.46 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 97.46 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 97.44 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.41 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.37 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.36 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 97.35 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.34 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.33 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 97.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.25 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 97.25 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 97.24 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.24 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.2 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.18 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 97.17 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.15 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 97.12 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.12 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.11 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 97.09 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.08 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.05 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.01 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 97.0 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.97 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.93 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.69 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.61 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 96.54 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.22 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.15 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 96.15 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.1 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 95.99 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.89 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.59 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.32 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.07 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 94.93 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 94.74 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.71 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 94.66 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.64 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 94.46 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.31 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 94.3 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.25 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.19 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 94.18 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 93.86 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.72 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 93.43 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 93.24 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 93.12 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.88 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 92.48 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 92.21 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.07 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.68 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 91.47 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.25 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 91.04 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 91.04 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.0 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.92 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 90.56 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 89.91 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.9 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 88.51 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.51 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 86.73 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 86.01 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 85.96 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 85.42 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 85.16 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 85.11 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 84.16 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.07 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 84.04 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.02 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 83.68 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 83.27 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 83.02 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 82.6 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 82.39 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 82.35 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 81.6 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.88 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 80.49 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.73 E-value=9.8e-18 Score=162.86 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=103.0
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCCCCCCCCCeeEEEec
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
.++++.+|||||||+|.++..|++++. .++++|+|+.+++.|+++ + .++.+.+++.+++|+++++||+|+|.
T Consensus 12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~ 88 (231)
T d1vl5a_ 12 ALKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCR 88 (231)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEE
T ss_pred CCCCcCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccc
Confidence 446677899999999999999998875 578889999999998765 3 45789999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC--------------CCC--hhhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD--------------KDY--PLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~--------------~~~--~~~W~~le~La~~~gw~~v~ 360 (617)
.+++|+. |+..+|+++.|+|||||++++.++...... ..+ ...-.++.++++++||+.+.
T Consensus 89 ~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 164 (231)
T d1vl5a_ 89 IAAHHFP-NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE 164 (231)
T ss_dssp SCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEE
T ss_pred ccccccC-CHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEE
Confidence 9887765 899999999999999999999754211100 000 00013377788889998764
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=3.3e-17 Score=160.55 Aligned_cols=103 Identities=21% Similarity=0.413 Sum_probs=90.9
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
.+++|.+|||||||+|.++..|++++. +++++|+|+.|++.|+++ +. ++.+.++|++++|+++++||+|+|.
T Consensus 13 ~~~~~~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 89 (234)
T d1xxla_ 13 ECRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCR 89 (234)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeee
Confidence 456788999999999999999999864 678999999999988765 33 5888999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.+++|+. ++..+|+++.|+|||||++++++.
T Consensus 90 ~~l~~~~-d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 90 YAAHHFS-DVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp SCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeccc-CHHHHHHHHHHeeCCCcEEEEEEc
Confidence 8877755 899999999999999999999753
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.69 E-value=5.1e-17 Score=163.89 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=106.7
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
..+.++.+|||||||+|.++..|+++ +. .++++|+++.+++.|+++ |+ ++.+..+|+.++|+++++||+|
T Consensus 63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V 139 (282)
T d2o57a1 63 GVLQRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI 139 (282)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred cCCCCCCEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchh
Confidence 34578889999999999999999886 43 678889999999988876 43 4789999999999999999999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCC-hh------------hHHHHHHHHHHcCceEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDY-PL------------IWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~-~~------------~W~~le~La~~~gw~~v~~~ 362 (617)
+|..+++|+. ++..+|+++.|+|||||+|+++++......... .. ....+.++++..||+.+...
T Consensus 140 ~~~~~l~h~~-d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 140 WSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp EEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hccchhhhcc-CHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence 9999888876 899999999999999999999875322111110 00 12336778889999877643
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=1.1e-16 Score=154.01 Aligned_cols=101 Identities=27% Similarity=0.360 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
++.+|||||||+|.++..|++.+. .++++|+|+.|++.|+++ +..+.+...|+.++|+++++||+|+|..+++
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 556899999999999999999875 678889999999998865 5667888889999999999999999999888
Q ss_pred ccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 304 DWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 304 h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|+. .+...+|+++.|+|||||.+++..+
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 875 4677899999999999999999865
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=9.6e-17 Score=156.30 Aligned_cols=100 Identities=26% Similarity=0.457 Sum_probs=87.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||+|||+|.++..|++.+. .++++|+|+.|++.|++++... +..++++++|+++++||+|+|...++|+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCEEEEECCCCchhcccccccce---EEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhh
Confidence 455799999999999999999875 6788899999999999998654 567899999999999999998654555556
Q ss_pred chHHHHHHHHHhccCCeEEEEEeC
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|+..+|+++.|+|||||+++++.+
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 899999999999999999999885
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=8.9e-16 Score=147.00 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=99.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
++.+|||||||+|.++..+.+ ++++|+|+.+++.|++++ +.+..++++++|+++++||+|+|+.+++|+.
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~- 105 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFVD- 105 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGSS-
T ss_pred CCCeEEEECCCCcccccccce-------EEEEeCChhhcccccccc--ccccccccccccccccccccccccccccccc-
Confidence 345699999999999988853 246799999999999885 6788899999999999999999999888876
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCCCCCC-------------CCCCh--hhHHHHHHHHHHcCceEEEE
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPPAYRK-------------DKDYP--LIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~~~~~-------------~~~~~--~~W~~le~La~~~gw~~v~~ 361 (617)
++..+|+++.|+|+|||.+++.++..... ...+. ..-+++.+++++.||+.+..
T Consensus 106 d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v 174 (208)
T d1vlma_ 106 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 174 (208)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 89999999999999999999998743210 00110 01245889999999987753
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=8.2e-16 Score=149.56 Aligned_cols=136 Identities=16% Similarity=0.090 Sum_probs=107.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-----CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-----GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-----~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
..++.+|||||||+|.++..|++.+.. .++++|+|+.|++.|+++.. .+.+.++|++++++++++||+|++..
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 346678999999999999998877553 67889999999999998732 35788999999999999999999999
Q ss_pred ccccccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCC----C--CChhhHHHHHHHHHHcCceEEEEee
Q 039518 301 CRVDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKD----K--DYPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 301 ~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~----~--~~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
+++|+.. +...+|.++.++|||||.++++++...... . ......+.+.+++++.||+++..+.
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 9888762 235799999999999999999865322110 1 1112345689999999999987554
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=7.6e-16 Score=151.89 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=101.7
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV 296 (617)
+++.+|.+|||||||+|.++..|+++ +. .++++|+|+.|++.|+++ |+ .+.+..+|+.++ +++++||+|
T Consensus 29 ~~l~pg~~VLDiGCG~G~~~~~la~~~~~---~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v 104 (245)
T d1nkva_ 29 LRMKPGTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVA 104 (245)
T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEE
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHhcCC---EEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEE
Confidence 34567889999999999999999875 43 678889999999988776 54 378899999887 468899999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC-----------C--hhhHHHHHHHHHHcCceEEE
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD-----------Y--PLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~-----------~--~~~W~~le~La~~~gw~~v~ 360 (617)
+|..+++|+. ++..+++++.|+|||||++++..+........ . ...-..+...+++.||+.+.
T Consensus 105 ~~~~~~~~~~-d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~ 180 (245)
T d1nkva_ 105 ACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 180 (245)
T ss_dssp EEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred EEEehhhccC-CHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEE
Confidence 9999888876 89999999999999999999987521111100 0 01123377778888887654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.62 E-value=2.1e-15 Score=147.07 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=106.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-CcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-GAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
+++|||||||+|.++..|++++. .++++|+++++++.|+++.. ++.+..++++.+++ +++||+|+|..+++|..
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS-
T ss_pred CCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecC-
Confidence 34699999999999999998875 57788999999999998844 47778888888775 57899999999887765
Q ss_pred chHHHHHHHH-HhccCCeEEEEEeCCCCCC-------------CC-----------CChhhHHHHHHHHHHcCceEEEEe
Q 039518 308 NDGILLKEVD-RVLRPNGYFVYSAPPAYRK-------------DK-----------DYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 308 d~~~~L~el~-RvLrPGG~Liis~p~~~~~-------------~~-----------~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
++..+|.++. |+|+|||.++++.|+.... .. ...-.++.+++++++.||+++...
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 8999999998 8999999999998753211 00 001125669999999999987643
Q ss_pred eeeEEEeeccc
Q 039518 363 IQTAIWIKEEN 373 (617)
Q Consensus 363 ~~~~IwqKp~~ 373 (617)
.++-||..
T Consensus 176 ---~~~~kp~~ 183 (225)
T d2p7ia1 176 ---GIFFKALA 183 (225)
T ss_dssp ---EEEECCSC
T ss_pred ---EEEecccc
Confidence 34456655
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.58 E-value=3.1e-15 Score=149.42 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=105.7
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC---CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI---GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~---~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.++.+|||+|||+|.++..|+.++.. .++++|+++.+++.|+++.. .+.+.+.+++++++++++||+|+|..+++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccc
Confidence 45668999999999999998876544 67888999999999998732 35788899999999999999999999998
Q ss_pred cccc-chHHHHHHHHHhccCCeEEEEEeCCCCCC-----CCC--ChhhHHHHHHHHHHcCceEEEEee
Q 039518 304 DWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRK-----DKD--YPLIWDKLVNLTTAMCWKLIARKI 363 (617)
Q Consensus 304 h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~-----~~~--~~~~W~~le~La~~~gw~~v~~~~ 363 (617)
|+.+ +...+|+++.++|+|||++++..+..... ..+ ..+..+.+.+++++.||+++....
T Consensus 170 hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred ccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 8873 24578999999999999999986532211 111 112245688999999999987543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=4.5e-15 Score=145.50 Aligned_cols=102 Identities=20% Similarity=0.284 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.++.+|||||||+|.++..|++++. .++++|+|+.|++.|+++ +.++.+.++|+++++++ ++||+|+|....
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~ 115 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFST 115 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSG
T ss_pred CCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhh
Confidence 3556799999999999999999876 578889999999999876 66789999999999987 579999997544
Q ss_pred cccc--cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 303 VDWH--ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 303 ~h~~--~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
+++. ++...+|++++++|||||++++..++
T Consensus 116 ~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 116 IMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 4444 45678999999999999999998753
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=5e-15 Score=148.80 Aligned_cols=96 Identities=21% Similarity=0.338 Sum_probs=84.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
.+.+|||||||+|.++..|++..... .+.++|+|+.+++.|+++..++.+.++|+.++|+++++||+|++..+.++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 34569999999999999999885432 67788999999999999988999999999999999999999998765443
Q ss_pred chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 308 NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 308 d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++|+.|+|||||++++++|.
T Consensus 160 -----~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 -----AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp -----HHHHHHHEEEEEEEEEEEEC
T ss_pred -----HHHHHHHhCCCcEEEEEeeC
Confidence 57899999999999999874
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.55 E-value=1.2e-14 Score=146.95 Aligned_cols=117 Identities=15% Similarity=0.292 Sum_probs=94.1
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEec
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALS 282 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d 282 (617)
+.|.+.+.+.+ .++..+.+|||||||+|.++..|++.......++++|+++.+++.|+++ +.++.+...|
T Consensus 12 ~d~l~~l~~~~------~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d 85 (281)
T d2gh1a1 12 DDYVSFLVNTV------WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 85 (281)
T ss_dssp HHHHHHHHHTT------SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESC
T ss_pred HHHHHHHHHHH------hccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccc
Confidence 34555554433 1234556799999999999999988643333688899999999999876 4567888899
Q ss_pred CCCCCCCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 283 TKQLPYPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 283 ~~~Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+..++++ ++||+|+|+.+++|+. ++..+|+++.++|||||.+++.+|
T Consensus 86 ~~~~~~~-~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 86 ATEIELN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp TTTCCCS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccccc-CCceEEEEehhhhcCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999875 4799999999887765 899999999999999999999886
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.53 E-value=1.6e-14 Score=140.43 Aligned_cols=106 Identities=15% Similarity=0.069 Sum_probs=82.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCC-CcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLD-IQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~g-v~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++.+|||+|||+|..+..|++.. .....++++|+|+.|++.|+++ +....+......-.+++...||+|+|+.+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 567789999999999999988642 2234889999999999999986 33333333333334455678999999988
Q ss_pred ccccc-cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 302 RVDWH-ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 302 l~h~~-~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++++. +++..+|++++|+|||||.+++.++.
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 87765 57889999999999999999998754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.51 E-value=1.1e-14 Score=136.16 Aligned_cols=104 Identities=9% Similarity=-0.045 Sum_probs=85.1
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-----------------CCcEEEEecCCCCC
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG-----------------IGAMISALSTKQLP 287 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg-----------------~~~~~~~~d~~~Lp 287 (617)
.+.++.+|||+|||+|..+.+|+++|. .++++|+|+.|++.|+++. ....+..++...++
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 345788999999999999999999987 6788899999999999862 23456677777765
Q ss_pred C-CCCCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 288 Y-PSSSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 288 f-~d~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
. ...+||+|+++.++++.. ++...+++++.++|||||++++...
T Consensus 94 ~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 94 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 3 456899999998888776 3467899999999999999888754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.48 E-value=6e-14 Score=133.77 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=82.7
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEecccccc
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h 304 (617)
++|||||||+|..+.+|++++. .++++|+|+.+++.|+++ +++ +.+...|+..+++ +++||+|+|..+++|
T Consensus 32 grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence 3799999999999999999986 567889999999987654 444 6778888888875 678999999998888
Q ss_pred ccc-chHHHHHHHHHhccCCeEEEEEeC
Q 039518 305 WHA-NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 305 ~~~-d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++. +...+++++.++|+|||++++...
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 763 356799999999999999999753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.48 E-value=3.3e-14 Score=140.78 Aligned_cols=103 Identities=22% Similarity=0.241 Sum_probs=85.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCC-CCCCeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPY-PSSSFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf-~d~sFDlV~~s 299 (617)
.++.+|||||||+|..+..+++.+.. .++++|+|+.|++.|+++ + .++.+.++|+...++ .+++||+|+|.
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 35678999999999999999887654 578899999999999876 2 247788888877765 46789999999
Q ss_pred cccccccc---chHHHHHHHHHhccCCeEEEEEeC
Q 039518 300 RCRVDWHA---NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 300 ~~l~h~~~---d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.+++|... +...++.++.|+|||||+|+++.|
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 88888753 345799999999999999999876
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.47 E-value=8.3e-14 Score=136.79 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=82.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecc-ccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSR-CRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~-~l~ 303 (617)
+++|||||||+|.++..|++++. .++++|+|++|++.|+++ +.++.+.++|+..+++ +++||+|+|.. ++.
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeee
Confidence 45799999999999999999986 577889999999998875 6788999999988886 46899999863 444
Q ss_pred ccc--cchHHHHHHHHHhccCCeEEEEEe
Q 039518 304 DWH--ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 304 h~~--~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+. ++...+|++++++|+|||.|++..
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 443 456779999999999999999865
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=2.7e-13 Score=138.13 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=83.7
Q ss_pred cCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCe
Q 039518 221 TGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSF 293 (617)
Q Consensus 221 ~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sF 293 (617)
..++++.+|.+|||||||.|.++.+++++ ++ .++++++|+.+++.|+++ ++. +.+... +.++++++|
T Consensus 54 ~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~---~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~---d~~~~~~~f 127 (291)
T d1kpia_ 54 LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ---GWEEFDEPV 127 (291)
T ss_dssp HHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC---CGGGCCCCC
T ss_pred HHhcCCCCCCEEEEecCcchHHHHHHHHhcCc---ceeeccchHHHHHHHHHHHHhhccchhhhhhhh---ccccccccc
Confidence 34567789999999999999999999875 54 677889999999888765 443 333333 345667899
Q ss_pred eEEEeccccccccc--------chHHHHHHHHHhccCCeEEEEEe
Q 039518 294 EMVHCSRCRVDWHA--------NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 294 DlV~~s~~l~h~~~--------d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|.|+|..++.|+.+ +...+++++.|+|||||.+++.+
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 99999999999863 35789999999999999999865
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.2e-13 Score=134.33 Aligned_cols=104 Identities=12% Similarity=0.052 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccC-----CCcEEEeeecCCcHHHHHHHHHhCC------CcEE--EEecCC------CCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPL-----DIQTMSFAPKDGHENQIQFALERGI------GAMI--SALSTK------QLP 287 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~-----gv~~v~v~~iDis~~~lq~A~erg~------~~~~--~~~d~~------~Lp 287 (617)
.+..+|||||||+|.++..|++. ....+.++++|+|+.|++.|+++.. .+.+ ...+++ ..+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 44568999999999998877653 1224577899999999999988621 1222 222222 235
Q ss_pred CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 288 YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 288 f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+++++||+|+|.++++|+. ++..+|+++.++|+|||+++++.+
T Consensus 119 ~~~~~fD~I~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp SSCCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCceeEEEEccceecCC-CHHHHHHHHHhhCCCCCEEEEEEe
Confidence 6789999999999887765 899999999999999999999875
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=5e-13 Score=135.28 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=84.3
Q ss_pred cCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCCCCCCCCCe
Q 039518 221 TGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQLPYPSSSF 293 (617)
Q Consensus 221 ~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~Lpf~d~sF 293 (617)
...+.+++|.+|||||||+|.++.+++++ +. .++++|+|+++++.|+++ +++ +.+...|...+ +++|
T Consensus 45 ~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~f 118 (280)
T d2fk8a1 45 LDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPV 118 (280)
T ss_dssp HTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCC
T ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccch
Confidence 35567889999999999999999999876 54 678889999999998876 443 34444444433 4789
Q ss_pred eEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 294 EMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 294 DlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|.|++..+++|+. .+...+++++.|+|||||.+++.+
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 9999999999987 345889999999999999999964
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=9.4e-14 Score=136.43 Aligned_cols=133 Identities=9% Similarity=-0.033 Sum_probs=96.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC--Cc----------------------------
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI--GA---------------------------- 276 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~--~~---------------------------- 276 (617)
.++.+|||||||+|.++..++..+. ..++++|+|+.+++.|+++.. +.
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 4577899999999999888877654 378999999999999987511 00
Q ss_pred -----EEEEe----cCCCCCCCCCCeeEEEecccccccc---cchHHHHHHHHHhccCCeEEEEEeCCCCCCC-------
Q 039518 277 -----MISAL----STKQLPYPSSSFEMVHCSRCRVDWH---ANDGILLKEVDRVLRPNGYFVYSAPPAYRKD------- 337 (617)
Q Consensus 277 -----~~~~~----d~~~Lpf~d~sFDlV~~s~~l~h~~---~d~~~~L~el~RvLrPGG~Liis~p~~~~~~------- 337 (617)
..... +....++++++||+|++..+++|.. ++...+++++.|+|||||+++++++......
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~ 207 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 207 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccc
Confidence 01111 1223467789999999999998876 3566799999999999999999875322100
Q ss_pred CCChhhHHHHHHHHHHcCceEEEE
Q 039518 338 KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 338 ~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.......+.+.++++.+||+++..
T Consensus 208 ~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 208 SCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cccCCCHHHHHHHHHHCCCEEEEE
Confidence 011112567999999999998774
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5e-13 Score=130.42 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----------------------CCcEEEEecCC
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----------------------IGAMISALSTK 284 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----------------------~~~~~~~~d~~ 284 (617)
.++.+|||+|||+|..+.+|+++|. .|+++|+|+.+++.|+++. ..+.+.++|..
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 4566899999999999999999987 5788899999999988752 24567777776
Q ss_pred CCC-CCCCCeeEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 285 QLP-YPSSSFEMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 285 ~Lp-f~d~sFDlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.++ ...+.||+|+...+++++. ++...+++++.++|||||++++...
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 664 5678999999998888887 4567899999999999999888764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=1.6e-12 Score=128.03 Aligned_cols=138 Identities=11% Similarity=0.047 Sum_probs=100.0
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCC-CCCCCCeeEEE
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQL-PYPSSSFEMVH 297 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~L-pf~d~sFDlV~ 297 (617)
..+.+.+|.+|||+|||+|.++..|++.+... .|.++|+|+.+++.++++. .++.....+.... ++.+..+|+++
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g-~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTS-EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEE
Confidence 45778999999999999999999999875443 7889999999999988762 2344555554333 35566777766
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCC-CCChhhHHHHHHHHHHcCceEEEE
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKD-KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~-~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
+...+ ++.+++..++.++.++|||||+++++........ .......++..+.++..||+.+..
T Consensus 147 i~~~~-~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 147 IYEDV-AQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp EEECC-CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred eeccc-cchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 55434 4455788999999999999999999864222111 122233556777888999998864
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=1.1e-12 Score=133.22 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=86.5
Q ss_pred cCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCe
Q 039518 221 TGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSF 293 (617)
Q Consensus 221 ~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sF 293 (617)
..++++++|.+|||||||.|.++.++++. |+ .++++.+|+.+++.|+++ +. .+.+...|...++ ++|
T Consensus 55 ~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~---~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~f 128 (285)
T d1kpga_ 55 LGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPV 128 (285)
T ss_dssp HTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCC
T ss_pred HHHcCCCCCCEEEEecCcchHHHHHHHhcCCc---ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccc
Confidence 45677899999999999999999998876 43 778889999999998876 22 3566777776664 689
Q ss_pred eEEEecccccccc-cchHHHHHHHHHhccCCeEEEEEe
Q 039518 294 EMVHCSRCRVDWH-ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 294 DlV~~s~~l~h~~-~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|.|++..++.|+. .+...+++++.|+|||||.+++.+
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 9999999999986 456889999999999999999854
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=6.8e-13 Score=132.60 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=93.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
.+|++|||+|||+|.++..+++.+. .+.++|+++.+++.|+++ ++++.+..++... .+++++||+|+++...
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~ 194 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYA 194 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCH
T ss_pred CccCEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccc
Confidence 4677899999999999999998876 467889999999988864 7778888877644 3457899999986322
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEe
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARK 362 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~ 362 (617)
.....++.++.++|||||++++++... .. -+.+.+.+++.||+.+...
T Consensus 195 ----~~l~~l~~~~~~~LkpGG~lilSgil~------~~--~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 195 ----ELHAALAPRYREALVPGGRALLTGILK------DR--APLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHHEEEEEEEEEEEEEG------GG--HHHHHHHHHHTTCEEEEEE
T ss_pred ----ccHHHHHHHHHHhcCCCcEEEEEecch------hh--HHHHHHHHHHCCCEEEEEE
Confidence 235678899999999999999986311 11 3458888899999987754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.35 E-value=2.3e-12 Score=122.70 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=81.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCCCCCCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
..++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ ++ .+.+...|..+ ++++++||+|+|
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~ 125 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIIT 125 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEE
T ss_pred cCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEE
Confidence 34567899999999999999998765 567889999999999864 32 46777777755 567889999999
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+..+++..+....++.++.++|+|||.+++...
T Consensus 126 ~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 876554443346789999999999999988653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.35 E-value=2.6e-12 Score=127.29 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=93.1
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
..+..+|||||||+|.++..++++.... .++.+|+ +.+++.++++ +. .+.+..+|+.+ +. ..+||+|+++
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~-~~~~D~v~~~ 153 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL-PRKADAIILS 153 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SSCEEEEEEE
T ss_pred CccCCEEEEeCCCCCHHHHHHHHhccee-EEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hc-ccchhheeec
Confidence 3556789999999999999999885443 4556777 3456666554 43 46777777643 22 3569999999
Q ss_pred cccccccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh-----------------hhHHHHHHHHHHcCceEEEE
Q 039518 300 RCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP-----------------LIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 300 ~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~-----------------~~W~~le~La~~~gw~~v~~ 361 (617)
.++|||.+ +...+|++++|+|||||+++|.+........... ..-+++.++++++||+++..
T Consensus 154 ~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v 233 (253)
T d1tw3a2 154 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEV 233 (253)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred cccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEE
Confidence 99999873 2357899999999999999998753322211111 01234778899999997763
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=7.1e-13 Score=129.63 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=82.8
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----CCcEEEEec
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----IGAMISALS 282 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----~~~~~~~~d 282 (617)
..+.+.+.+.+. .+|++|||||||+|..+..+++.+. .+++++|+++.+++.|+++. .++.+...+
T Consensus 40 ~~~~~~la~~~~--------~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~ 109 (229)
T d1zx0a1 40 TPYMHALAAAAS--------SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL 109 (229)
T ss_dssp HHHHHHHHHHHT--------TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESC
T ss_pred HHHHHHHHHhhc--------cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhccccccccccc
Confidence 445555555442 3456799999999999999988754 37889999999999998873 334455544
Q ss_pred CC--CCCCCCCCeeEEEe-----cccccccccchHHHHHHHHHhccCCeEEEEE
Q 039518 283 TK--QLPYPSSSFEMVHC-----SRCRVDWHANDGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 283 ~~--~Lpf~d~sFDlV~~-----s~~l~h~~~d~~~~L~el~RvLrPGG~Liis 329 (617)
.. ..++++++||.|+. ....+|+. ++..+++++.|+|||||.|++.
T Consensus 110 ~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~-~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 110 WEDVAPTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp HHHHGGGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccccccceeeccccccccccccc-CHHHHHHHHHHHcCCCcEEEEE
Confidence 32 33567889999973 44444444 7889999999999999999884
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.31 E-value=1.7e-11 Score=115.93 Aligned_cols=120 Identities=12% Similarity=0.104 Sum_probs=92.5
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEe
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
.+.++.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ ++ ++.+..+|+.+++++...||+|++
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~ 106 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVV 106 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEE
T ss_pred CCCCCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEE
Confidence 446778899999999999999988754 567889999999999875 43 578888888777777889999998
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
.... .+...++.++.+.|||||++++..... ..-..+.+.++..+|..-
T Consensus 107 ~~~~----~~~~~~~~~~~~~LkpgG~lvi~~~~~--------e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 107 GGSG----GELQEILRIIKDKLKPGGRIIVTAILL--------ETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp SCCT----TCHHHHHHHHHHTEEEEEEEEEEECBH--------HHHHHHHHHHHHTTCCCE
T ss_pred eCcc----ccchHHHHHHHHHhCcCCEEEEEeecc--------ccHHHHHHHHHHcCCCeE
Confidence 7533 246789999999999999999876411 112235566677777543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.30 E-value=3.7e-12 Score=123.45 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=80.4
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEEEecCCCCCCCCCC---eeE
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMISALSTKQLPYPSSS---FEM 295 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~~~d~~~Lpf~d~s---FDl 295 (617)
..+.+.||.+|||+|||+|..+.+|++..... .|+++|+++.+++.|+++ ..++.+...+....+..... +|+
T Consensus 50 ~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 50 HRLKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCCCSSCEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred ccCCCCCCCEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE
Confidence 45788999999999999999999998864433 789999999999988765 23567777777665544443 555
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|++. +.| ..+...++.++.++|||||+++++.
T Consensus 129 v~~~--~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 129 IYQD--IAQ-KNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EEEC--CCS-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEec--ccC-hhhHHHHHHHHHHHhccCCeEEEEE
Confidence 5432 233 3467889999999999999999975
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=3.9e-12 Score=127.67 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=95.9
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh--------CCCcEEEEecCCCCCCCCCCee
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER--------GIGAMISALSTKQLPYPSSSFE 294 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er--------g~~~~~~~~d~~~Lpf~d~sFD 294 (617)
+.+.||++|||+|||+|.++..|++. +... .+.++|+++++++.|+++ ..++.+.+.|..+.++++++||
T Consensus 92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 92 GDIFPGARVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred hCCCCCCEEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcc
Confidence 45678999999999999999999876 4433 677889999999999874 1356788889888899999999
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.|++ +.+ +|..++.++.++|||||.+++..|... ...+.++.+..+.+|..+.
T Consensus 171 aV~l-----dlp-~P~~~l~~~~~~LkpGG~lv~~~P~i~-------Qv~~~~~~l~~~~~f~~i~ 223 (264)
T d1i9ga_ 171 RAVL-----DML-APWEVLDAVSRLLVAGGVLMVYVATVT-------QLSRIVEALRAKQCWTEPR 223 (264)
T ss_dssp EEEE-----ESS-CGGGGHHHHHHHEEEEEEEEEEESSHH-------HHHHHHHHHHHHSSBCCCE
T ss_pred eEEE-----ecC-CHHHHHHHHHhccCCCCEEEEEeCccC-------hHHHHHHHHHHcCCeecce
Confidence 9984 444 788999999999999999999887432 2233344554566786543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=2.7e-12 Score=129.54 Aligned_cols=114 Identities=24% Similarity=0.419 Sum_probs=82.1
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-----cE
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-----AM 277 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-----~~ 277 (617)
..+.+.+.+++... ++.+|||+|||+|.++..|+++|. .++++|+|+.|++.|+++ +.. ..
T Consensus 42 ~~~~~~l~~~l~~~-------~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~ 111 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQH-------GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWV 111 (292)
T ss_dssp HHHHHHHHHHHHHT-------TCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCE
T ss_pred HHHHHHHHHHhhhc-------CCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceee
Confidence 44555566666442 345799999999999999999975 678899999999999865 222 22
Q ss_pred EEEecCC----CCCCCCCCeeEEEecc-cccccc------cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 278 ISALSTK----QLPYPSSSFEMVHCSR-CRVDWH------ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 278 ~~~~d~~----~Lpf~d~sFDlV~~s~-~l~h~~------~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+..++.. .+| +.++||+|+|.. ++.|+. ++...+|+++.|+|||||+|++...
T Consensus 112 ~~~~~~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 112 IEEANWLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EEECCGGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeccccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 3333332 233 346799999864 455654 2356799999999999999999763
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.27 E-value=1.4e-11 Score=122.47 Aligned_cols=133 Identities=20% Similarity=0.220 Sum_probs=92.8
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
..+..+|||||||+|.++..++++.+.. .++..|+ +.+++.|+++ +. .+.+..+|... +.+ ..||+|++.
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~ 154 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLS 154 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEE
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCc-EEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhcc
Confidence 3456789999999999999999986543 5667787 5566666654 33 35666666543 444 459999999
Q ss_pred cccccccc-chHHHHHHHHHhccCCeEEEEEeCCCCCCCCCCh------------------hhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHA-NDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYP------------------LIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~-d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~------------------~~W~~le~La~~~gw~~v~ 360 (617)
+++|+|.+ +...+|++++++|||||.++|.+........... +..+++.++++++||+++.
T Consensus 155 ~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~ 234 (256)
T d1qzza2 155 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 234 (256)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred ccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeE
Confidence 99999873 2356899999999999999998752211111110 1134578899999998887
Q ss_pred Ee
Q 039518 361 RK 362 (617)
Q Consensus 361 ~~ 362 (617)
..
T Consensus 235 ~~ 236 (256)
T d1qzza2 235 ER 236 (256)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.2e-12 Score=128.82 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=93.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC--C--c---------------------------
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI--G--A--------------------------- 276 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~--~--~--------------------------- 276 (617)
.|.+|||||||+|.+....+...+. .|+++|+|+.+++.++++-. . .
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~--~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCC--eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 5678999999999887666655443 78899999999999976411 0 0
Q ss_pred ----EEEEecCC------CCCCCCCCeeEEEecccccccccc---hHHHHHHHHHhccCCeEEEEEeCCCCCCC------
Q 039518 277 ----MISALSTK------QLPYPSSSFEMVHCSRCRVDWHAN---DGILLKEVDRVLRPNGYFVYSAPPAYRKD------ 337 (617)
Q Consensus 277 ----~~~~~d~~------~Lpf~d~sFDlV~~s~~l~h~~~d---~~~~L~el~RvLrPGG~Liis~p~~~~~~------ 337 (617)
.+...|+. ..+++.++||+|++.+++++...+ ...+|+++.++|||||+|++.++......
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~ 211 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence 11122321 223456789999999999888644 56789999999999999999875322110
Q ss_pred -CCChhhHHHHHHHHHHcCceEEEE
Q 039518 338 -KDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 338 -~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
.......+.+.++++..||+++..
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v~~~ 236 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKVRDL 236 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEEEE
Confidence 011122567999999999998763
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.24 E-value=2.3e-11 Score=117.47 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=92.5
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCCCCeeEEEecccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlV~~s~~l~h 304 (617)
|||||||+|.++..|+++.... .+.++|++..++..|.++ ++ ++.+..+|+..+. ++++++|.|++.+ -.+
T Consensus 33 vLeIGcG~G~~~~~lA~~~p~~-~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f-p~P 110 (204)
T d2fcaa1 33 HIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF-SDP 110 (204)
T ss_dssp EEEECCTTSHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES-CCC
T ss_pred EEEEEecCcHHHHHHHHhCCCC-cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc-ccc
Confidence 9999999999999999987654 788999999999887654 44 5788888887775 7899999999765 345
Q ss_pred cccch--------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 305 WHAND--------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 305 ~~~d~--------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
|+... ..+|.++.|+|||||.|.+.+ +....++.+.+.....++....
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T--------D~~~y~~~~~~~~~~~~~~~~~ 166 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT--------DNRGLFEYSLKSFSEYGLLLTY 166 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE--------SCHHHHHHHHHHHHHHTCEEEE
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE--------CChHHHHHHHHHHHHCCCcccc
Confidence 55332 479999999999999999976 3344455577777776765443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.21 E-value=1.7e-11 Score=121.99 Aligned_cols=123 Identities=12% Similarity=0.155 Sum_probs=92.6
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----C--CCcEEEEecCCCCCCCCCCee
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----G--IGAMISALSTKQLPYPSSSFE 294 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g--~~~~~~~~d~~~Lpf~d~sFD 294 (617)
..+.++||++|||+|||+|.++..|++. +... .++++|.++.+++.|+++ + .++.+...|+.+. +++++||
T Consensus 79 ~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g-~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD 156 (250)
T d1yb2a1 79 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYD 156 (250)
T ss_dssp --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEE
T ss_pred HHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceee
Confidence 3467789999999999999999999875 3332 677889999999999876 1 2467788887665 4678999
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.|++. . .++..++.++.++|||||+|++..|... ...++...++..||..+.
T Consensus 157 ~V~ld-----~-p~p~~~l~~~~~~LKpGG~lv~~~P~i~--------Qv~~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 157 AVIAD-----I-PDPWNHVQKIASMMKPGSVATFYLPNFD--------QSEKTVLSLSASGMHHLE 208 (250)
T ss_dssp EEEEC-----C-SCGGGSHHHHHHTEEEEEEEEEEESSHH--------HHHHHHHHSGGGTEEEEE
T ss_pred eeeec-----C-CchHHHHHHHHHhcCCCceEEEEeCCcC--------hHHHHHHHHHHCCCceeE
Confidence 99853 2 3677899999999999999999887421 123344555667887554
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=1.7e-11 Score=118.82 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=77.3
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEec
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
.+++|.+|||||||+|.++..|++.......+.++|+++.+++.|+++ +. ++.+..+|....++.+++||+|++.
T Consensus 72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~ 151 (213)
T d1dl5a1 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT 151 (213)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhh
Confidence 356788999999999999999987522222677889999999999876 33 4667777877777778899999998
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.++.+.+ .++.+.|||||.+++..
T Consensus 152 ~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 152 VGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp SBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred ccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 8766554 35678899999999854
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.15 E-value=2.1e-10 Score=112.41 Aligned_cols=135 Identities=8% Similarity=0.034 Sum_probs=92.5
Q ss_pred CCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCC---CCCCCCCCee
Q 039518 222 GNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG---IGAMISALSTK---QLPYPSSSFE 294 (617)
Q Consensus 222 ~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~---~Lpf~d~sFD 294 (617)
..+.+.||++|||+|||+|.++.+|++. |... .+.++|+++.+++.++++. .++.....+.. .++.....+|
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G-~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEG-KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceE
Confidence 4577899999999999999999999986 3333 6788899999999888762 23444455542 3334556899
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCC-hhhHHHHHHHHHHcCceEEEE
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDY-PLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~-~~~W~~le~La~~~gw~~v~~ 361 (617)
+|++. + +.+++...++.++.++|||||+++++........... .......+.+. +.+|+.+..
T Consensus 146 ~i~~d--~-~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~-~~gf~iie~ 209 (227)
T d1g8aa_ 146 VIFED--V-AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEYFEVIER 209 (227)
T ss_dssp EEEEC--C-CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTTSEEEEE
T ss_pred EEEEE--c-cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHH-HcCCEEEEE
Confidence 99864 2 3344678899999999999999999753211111111 22233344443 458988763
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.14 E-value=2.6e-10 Score=109.96 Aligned_cols=118 Identities=15% Similarity=0.275 Sum_probs=90.1
Q ss_pred EEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCC--CCCCCeeEEEecccccc
Q 039518 232 VLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLP--YPSSSFEMVHCSRCRVD 304 (617)
Q Consensus 232 VLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlV~~s~~l~h 304 (617)
|||||||+|.++..+|+..... .+.++|+++.++..|.++ ++ ++.+..+|+..+. ++++++|.|++.+ -.+
T Consensus 35 vLdIGcG~G~~~~~lA~~~p~~-~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-PdP 112 (204)
T d1yzha1 35 HVEVGSGKGAFVSGMAKQNPDI-NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-SDP 112 (204)
T ss_dssp EEEESCTTSHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-CCC
T ss_pred EEEEeccCCHHHHHHHHHCCCC-ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-ccc
Confidence 9999999999999999987654 788899999988877654 54 5888888887775 7889999999764 445
Q ss_pred cccch--------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 305 WHAND--------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 305 ~~~d~--------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
|+... ..+|.++.|+|||||.|.+.+ +.....+.+.......++...
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T--------D~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT--------DNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE--------SCHHHHHHHHHHHHHHTCEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE--------CCccHHHHHHHHHHHCCcccc
Confidence 55322 579999999999999999976 233334445555666676544
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=1.8e-10 Score=115.42 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=90.3
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEE
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVH 297 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~ 297 (617)
+.+.+|++|||+|||+|.++..|++.......+.++|+++.+++.|+++ +. .+.+...|.. ..++...||.|+
T Consensus 99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~-~~~~~~~~D~V~ 177 (266)
T d1o54a_ 99 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS-EGFDEKDVDALF 177 (266)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG-GCCSCCSEEEEE
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc-ccccccceeeeE
Confidence 4567899999999999999999987522222678889999999999876 33 2444444532 245677899987
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
. +.+ ++..++.++.++|||||.+++..|... ..+++.+.++..||..+.
T Consensus 178 ~-----d~p-~p~~~l~~~~~~LKpGG~lv~~~P~~~--------Qv~~~~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 178 L-----DVP-DPWNYIDKCWEALKGGGRFATVCPTTN--------QVQETLKKLQELPFIRIE 226 (266)
T ss_dssp E-----CCS-CGGGTHHHHHHHEEEEEEEEEEESSHH--------HHHHHHHHHHHSSEEEEE
T ss_pred e-----cCC-CHHHHHHHHHhhcCCCCEEEEEeCccc--------HHHHHHHHHHHCCceeEE
Confidence 3 444 788999999999999999999887421 134556666778987654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.5e-10 Score=113.17 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=77.1
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----C------CCcEEEEecCCCCCCCCCCee
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----G------IGAMISALSTKQLPYPSSSFE 294 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g------~~~~~~~~d~~~Lpf~d~sFD 294 (617)
.+.+|.+|||||||+|..++.|++.......+.++|+++++++.|+++ + ..+.+..+|....+.++++||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 346788999999999999988887521122677889999999988765 2 246777888877777788999
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.|++..+..+.+ .++.+.|||||++++..
T Consensus 153 ~I~~~~~~~~ip-------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 153 AIHVGAAAPVVP-------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp EEEECSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred hhhhhcchhhcC-------HHHHhhcCCCcEEEEEE
Confidence 999987665543 35778999999999965
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=3.4e-10 Score=116.11 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=74.7
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH----hCC--CcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE----RGI--GAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e----rg~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
++++|||||||+|.++..++++|.. .+.++|.++ +++.|++ ++. .+.+..+++.++++++++||+|++...
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~ 114 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCS--EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEec
Confidence 3456999999999999999998865 566778775 3344443 343 467888899999999999999998654
Q ss_pred ccccc--cchHHHHHHHHHhccCCeEEE
Q 039518 302 RVDWH--ANDGILLKEVDRVLRPNGYFV 327 (617)
Q Consensus 302 l~h~~--~d~~~~L~el~RvLrPGG~Li 327 (617)
..+.. .....++.++.|+|||||.++
T Consensus 115 ~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 115 GYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 43333 356788999999999999886
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.1e-10 Score=114.45 Aligned_cols=113 Identities=15% Similarity=0.049 Sum_probs=82.1
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHH---HhC--CCcEEEEe
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFAL---ERG--IGAMISAL 281 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~---erg--~~~~~~~~ 281 (617)
..|.+.|.+.... .++++|||||||+|.++..+++.|.. .+.++|.++.+...++ +++ ..+.+..+
T Consensus 21 ~~y~~ai~~~~~~-------~~~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~ 91 (311)
T d2fyta1 21 ESYRDFIYQNPHI-------FKDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKG 91 (311)
T ss_dssp HHHHHHHHHCGGG-------TTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHhcccc-------CCcCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEe
Confidence 3555555444322 24557999999999999999998864 5677888887754332 233 34778888
Q ss_pred cCCCCCCCCCCeeEEEecccccccc--cchHHHHHHHHHhccCCeEEEE
Q 039518 282 STKQLPYPSSSFEMVHCSRCRVDWH--ANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 282 d~~~Lpf~d~sFDlV~~s~~l~h~~--~d~~~~L~el~RvLrPGG~Lii 328 (617)
+++++++++++||+|+|....++.. .....++....++|||||+++-
T Consensus 92 ~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 92 KIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 9999999999999999864443333 2256778888999999999874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=6e-10 Score=114.59 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=77.6
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----------------CCCcEEEEecCCCC
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----------------GIGAMISALSTKQL 286 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----------------g~~~~~~~~d~~~L 286 (617)
+.+.||++|||+|||+|.++..|++. +... .+.++|+++.+++.|+++ ..++.+...|+...
T Consensus 94 l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G-~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~ 172 (324)
T d2b25a1 94 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQG-RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 172 (324)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHHHCTTC-EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred hCCCCCCEEEEecccccHHHHHHHHHhCCCc-EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence 45678999999999999999999875 3333 577789999999999875 12467777787655
Q ss_pred C--CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 287 P--YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 287 p--f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
. +++.+||.|+. ..+ +|..+|.++.++|||||.|++..|.
T Consensus 173 ~~~~~~~~fD~V~L-----D~p-~P~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 173 TEDIKSLTFDAVAL-----DML-NPHVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp C-------EEEEEE-----CSS-STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred ccccCCCCcceEee-----cCc-CHHHHHHHHHHhccCCCEEEEEeCC
Confidence 3 45778999984 333 6777999999999999999998874
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.3e-10 Score=117.81 Aligned_cols=103 Identities=11% Similarity=-0.015 Sum_probs=79.7
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh--------------CCCcEEEEecCCCCCCCC
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER--------------GIGAMISALSTKQLPYPS 290 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er--------------g~~~~~~~~d~~~Lpf~d 290 (617)
.+.++.+|||+|||+|.++..++.... ...+.|+|+++.+++.|++. ..++.+..+|+..+++.+
T Consensus 148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~ 226 (328)
T d1nw3a_ 148 KMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE 226 (328)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHH
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccc
Confidence 345677899999999999998876532 12577889999999888653 235789999999888776
Q ss_pred CCe--eEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 291 SSF--EMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 291 ~sF--DlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..| |+|+++ .+.++ ++....|.++.|+|||||.++...
T Consensus 227 ~~~~advi~~~-~~~f~-~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 227 RIANTSVIFVN-NFAFG-PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHCSEEEEC-CTTTC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccCcceEEEEc-ceecc-hHHHHHHHHHHHhCCCCcEEEEec
Confidence 655 566655 34444 478899999999999999998754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.96 E-value=6.2e-10 Score=108.80 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=74.8
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---CCCcEEEEecCCCCCCCCCCeeEEEeccc
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---GIGAMISALSTKQLPYPSSSFEMVHCSRC 301 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~ 301 (617)
.++++.+|||||||+|.+++.|++... .+.++|+++.+++.|+++ ..++.+..+|...-....++||.|++..+
T Consensus 67 ~l~~g~~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a 143 (224)
T d1vbfa_ 67 DLHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWAT 143 (224)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred hhcccceEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcc
Confidence 456788999999999999999988764 566779999999999876 34577888876554335678999998876
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.+.+ ..+.+.|+|||+|++-.
T Consensus 144 ~~~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 144 APTLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp BSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred hhhhh-------HHHHHhcCCCCEEEEEE
Confidence 65543 34567899999999854
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=1.8e-09 Score=110.06 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHH---HHHHHhCC--CcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQI---QFALERGI--GAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~l---q~A~erg~--~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++++|||||||+|.++..+++.|.. .+.++|.++.+. +.++.++. .+.+..+++.+++++.++||+|++....
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 4567999999999999999998764 455667665442 23333444 3778889999999999999999986544
Q ss_pred cccc--cchHHHHHHHHHhccCCeEEEE
Q 039518 303 VDWH--ANDGILLKEVDRVLRPNGYFVY 328 (617)
Q Consensus 303 ~h~~--~d~~~~L~el~RvLrPGG~Lii 328 (617)
+... .....++..+.|+|||||.++-
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 3332 3467899999999999999874
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=3.1e-09 Score=106.69 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=90.0
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.+|||+|||+|.++..++...... .++++|+|+.+++.|+++ ++ ++.+...|... ++++++||+|+|+--.+
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p~~-~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERPDC-EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTS-EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred ccceeeeehhhhHHHHHHHhhCCcc-eeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence 3569999999999999998876543 788999999999999876 55 47777777543 45567999999984332
Q ss_pred ccc------------------------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 304 DWH------------------------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 304 h~~------------------------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
.-. .....++.++.+.|+|||.+++.... .. -+.+.+++++.||..+
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~------~q---~~~v~~~l~~~gf~~i 257 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW------QQ---GEAVRQAFILAGYHDV 257 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS------SC---HHHHHHHHHHTTCTTC
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc------hH---HHHHHHHHHHCCCCeE
Confidence 210 01235789999999999999996421 11 3568899999999765
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 258 ~ 258 (274)
T d2b3ta1 258 E 258 (274)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.80 E-value=3.1e-08 Score=98.54 Aligned_cols=128 Identities=7% Similarity=0.065 Sum_probs=90.8
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.+|.+|||+|||+|.++..+++++.. .+.++|+++.+++.++++ ++ .+.+..+|+..++ +.+.||.|++..
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~--~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~ 182 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY 182 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECC
T ss_pred CCccEEEECcceEcHHHHHHHHhCCc--EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECC
Confidence 35678999999999999999987642 678889999999988765 44 3677788887775 357899998652
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEEeee
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIARKIQ 364 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~~~~ 364 (617)
+.....++.++.++|++||.+.+..-........ ..-+.+.++++..|+++......
T Consensus 183 -----p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~--~~~e~~~~~~~~~g~~v~~~~~~ 239 (260)
T d2frna1 183 -----VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPR--EPFETFKRITKEYGYDVEKLNEL 239 (260)
T ss_dssp -----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTT--TTHHHHHHHHHHTTCEEEEEEEE
T ss_pred -----CCchHHHHHHHHhhcCCCCEEEEEeccccccchh--hHHHHHHHHHHHcCCceEEEEEE
Confidence 2234567888999999999987643211111111 11345778888899987654433
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.66 E-value=1.1e-08 Score=99.51 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=74.2
Q ss_pred cCCCCeEEEECCCCcHHHHHhccC----CC-cEEEeeecCCcHHHHHHHHHh----------CCCcEEEEecCCCCCCCC
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPL----DI-QTMSFAPKDGHENQIQFALER----------GIGAMISALSTKQLPYPS 290 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~----gv-~~v~v~~iDis~~~lq~A~er----------g~~~~~~~~d~~~Lpf~d 290 (617)
+.++.+|||||||+|.+++.|++. ++ ....|.++|.++.+++.|+++ ..++.+..+|......+.
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~ 157 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 157 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence 457788999999999999888764 21 112567789999999988764 225778888877666667
Q ss_pred CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 291 SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 291 ~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.||.|++..+..+.+ ..+.+.|+|||++++..
T Consensus 158 ~~fD~Iiv~~a~~~~p-------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 158 APYNAIHVGAAAPDTP-------TELINQLASGGRLIVPV 190 (223)
T ss_dssp CSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred cceeeEEEEeechhch-------HHHHHhcCCCcEEEEEE
Confidence 8899999987665443 24678999999998854
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=1.4e-08 Score=107.03 Aligned_cols=103 Identities=6% Similarity=-0.058 Sum_probs=72.0
Q ss_pred cccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhC-----------CC---cEEE-EecCCCCC
Q 039518 224 LRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERG-----------IG---AMIS-ALSTKQLP 287 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg-----------~~---~~~~-~~d~~~Lp 287 (617)
+.+.++++|||||||+|.++..++.. +.. .+.|+|+++.+++.|+++. .. ..+. .++....+
T Consensus 212 l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~--~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~ 289 (406)
T d1u2za_ 212 CQLKKGDTFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN 289 (406)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred hCCCCCCEEEeCCCCCcHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcc
Confidence 34567888999999999999999876 432 5778899999999998652 11 2221 22222222
Q ss_pred CCC---CCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 288 YPS---SSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 288 f~d---~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.+ ..+|+|+++. .++ .++....|.++.|+|||||.++.+.
T Consensus 290 ~~d~~~~~adVV~inn-~~f-~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 290 RVAELIPQCDVILVNN-FLF-DEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHHHGGGCSEEEECC-TTC-CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccceEEEEec-ccC-chHHHHHHHHHHHhcCCCcEEEEec
Confidence 111 2468888653 333 4578899999999999999998864
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.65 E-value=6.1e-08 Score=91.91 Aligned_cols=102 Identities=11% Similarity=0.184 Sum_probs=70.2
Q ss_pred CCeEEEECCCCcH----HHHHhccC---CCcEEEeeecCCcHHHHHHHHHh--------CCC------------------
Q 039518 229 VFQVLDVGCGVAS----FSAFLLPL---DIQTMSFAPKDGHENQIQFALER--------GIG------------------ 275 (617)
Q Consensus 229 g~rVLDIGCGtG~----~a~~La~~---gv~~v~v~~iDis~~~lq~A~er--------g~~------------------ 275 (617)
..||+++|||+|. ++..+.+. ...-+.|.+.|+++..++.|++. +.+
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 3579999999995 44444432 11235799999999999999743 110
Q ss_pred ----------cEEEEecCCC-CCCCCCCeeEEEecccccccccc-hHHHHHHHHHhccCCeEEEEEe
Q 039518 276 ----------AMISALSTKQ-LPYPSSSFEMVHCSRCRVDWHAN-DGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 276 ----------~~~~~~d~~~-Lpf~d~sFDlV~~s~~l~h~~~d-~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.+...+... .+.+.+.||+|+|.++++.+.++ ..++++.+++.|+|||+|++..
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 1112222211 22345789999999999888733 3679999999999999999853
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.64 E-value=6.4e-08 Score=98.98 Aligned_cols=104 Identities=16% Similarity=0.034 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC----CCCCCCCeeEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ----LPYPSSSFEMV 296 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~----Lpf~d~sFDlV 296 (617)
.+|.+|||+|||+|.++..++..|.. .++++|+++.+++.|+++ |+ ++.+..+|+.+ ++....+||+|
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 35678999999999999999988754 678889999999998775 55 35677777532 33456789999
Q ss_pred Eecccccccc--------cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 297 HCSRCRVDWH--------ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 297 ~~s~~l~h~~--------~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
++.--...-. .+...++..+.++|+|||.|++++..
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9753211111 12345788899999999999998753
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.61 E-value=3.3e-08 Score=95.72 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=73.0
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh----C-CCcEEEEecCCCCCCCCCCeeEEEe
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER----G-IGAMISALSTKQLPYPSSSFEMVHC 298 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er----g-~~~~~~~~d~~~Lpf~d~sFDlV~~ 298 (617)
.+.++.+|||||||+|..++.|+.. +. .+..+|.++.+++.|+++ + .++.+..+|........+.||.|++
T Consensus 75 ~l~~g~~VLeIGsGsGY~taila~l~g~---~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv 151 (215)
T d1jg1a_ 75 NLKPGMNILEVGTGSGWNAALISEIVKT---DVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIV 151 (215)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCS---CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred ccCccceEEEecCCCChhHHHHHHhhCc---eeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEe
Confidence 3456778999999999999988875 42 355678899998888875 3 4578888887665556788999998
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+..+.+ .. +.+.|+|||++++..
T Consensus 152 ~~a~~~ip---~~----l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 152 TAGAPKIP---EP----LIEQLKIGGKLIIPV 176 (215)
T ss_dssp CSBBSSCC---HH----HHHTEEEEEEEEEEE
T ss_pred ecccccCC---HH----HHHhcCCCCEEEEEE
Confidence 86665443 22 456799999999854
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=5.5e-08 Score=99.29 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC----CCCCCCCeeEEEe
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ----LPYPSSSFEMVHC 298 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~----Lpf~d~sFDlV~~ 298 (617)
.|++|||++||+|.++..++.. +..++++|+++.+++.|+++ |+ ++.+..+|..+ ++...++||+|++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4668999999999999998753 34788899999999999865 55 46777777533 3445678999997
Q ss_pred ccccccc--------ccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDW--------HANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~--------~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.--...- ..+...++..+.++|+|||.|++++.
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 5211110 11234678899999999999999875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.52 E-value=1.4e-07 Score=92.66 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=86.4
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEeccccccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA 307 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~ 307 (617)
+..+|||||||+|.++..++++.+.. ..+..|+.+ .++.+.. ...+.+..+|+.+ +.| ..|++++++++|+|.+
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l-~~~v~Dlp~-vi~~~~~-~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~d 154 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQ-VIENAPP-LSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSD 154 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEECHH-HHTTCCC-CTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCC-eEEEecchh-hhhccCC-CCCeEEecCCccc-ccc--cceEEEEehhhhhCCH
Confidence 44679999999999999999986543 455567643 2222211 2346777777633 333 3599999999999983
Q ss_pred -chHHHHHHHHHhccCCeEEEEEeCCCCC--CCCCC------------------hhhHHHHHHHHHHcCceEEE
Q 039518 308 -NDGILLKEVDRVLRPNGYFVYSAPPAYR--KDKDY------------------PLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 308 -d~~~~L~el~RvLrPGG~Liis~p~~~~--~~~~~------------------~~~W~~le~La~~~gw~~v~ 360 (617)
+-..+|+++++.|+|||.++|.+..... ..+.. .+.-+++.++++++||+.+.
T Consensus 155 e~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~ 228 (244)
T d1fp1d2 155 EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228 (244)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceE
Confidence 3456899999999999999998632111 11110 01134478899999999775
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.50 E-value=9.3e-08 Score=91.25 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=59.2
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.|++|||+|||+|.++..++.++.. .++++|+++.+++.|+++...+.+...|+.+++ +.||+|+++-
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NP 115 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNP 115 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCc
Confidence 4667999999999999888888765 678899999999999999888899999988764 6799999874
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.49 E-value=5.1e-08 Score=91.96 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=69.9
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCCC
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEV 548 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~ 548 (617)
.|||+|||.|.|+..|.. + ..| |-. +.+..+-+|++ -.+....+.++..+.+||+|++.+++.+. .
T Consensus 39 ~vLDiGcG~G~~~~~~~~--~--~gi---D~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~---~-- 105 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI--K--IGV---EPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFV---D-- 105 (208)
T ss_dssp CEEEETCTTSTTHHHHTC--C--EEE---ESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGS---S--
T ss_pred eEEEECCCCcccccccce--E--EEE---eCChhhccccccccc-ccccccccccccccccccccccccccccc---c--
Confidence 599999999999999864 2 233 333 78888888874 34555566677666999999999999865 2
Q ss_pred CChhhHHhhhhhcccCCceEEEe
Q 039518 549 CSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 549 c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+...+|-|+-|+|+|||.+++.
T Consensus 106 -d~~~~l~~~~~~L~pgG~l~i~ 127 (208)
T d1vlma_ 106 -DPERALKEAYRILKKGGYLIVG 127 (208)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccccchhhhhhcCCCCceEEEE
Confidence 3678999999999999999996
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.46 E-value=5.8e-08 Score=88.47 Aligned_cols=99 Identities=8% Similarity=0.100 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCC-CCCCCCCeeEEEecc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQ-LPYPSSSFEMVHCSR 300 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~-Lpf~d~sFDlV~~s~ 300 (617)
.|.+|||+|||+|.++...+.+|.. .++.+|.++.+++.++++ +.. +.+..+|+.. ++...++||+|++.-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 4567999999999999999999875 788899999999888775 332 5666666544 344578899999752
Q ss_pred cccccc-cchHHHHHHH--HHhccCCeEEEEEeC
Q 039518 301 CRVDWH-ANDGILLKEV--DRVLRPNGYFVYSAP 331 (617)
Q Consensus 301 ~l~h~~-~d~~~~L~el--~RvLrPGG~Liis~p 331 (617)
++. ......+..+ .++|+|||.+++..+
T Consensus 92 ---Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 92 ---PYAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp ---SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ---hhccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 222 1223455544 357999999999764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.44 E-value=1.2e-07 Score=88.18 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=74.8
Q ss_pred HHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCC
Q 039518 209 YIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTK 284 (617)
Q Consensus 209 Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~ 284 (617)
..+.+.+++.. .+..|.+|||+|||+|.++..++.++.. ++.+|.++.+++.++++ +....+...+..
T Consensus 27 v~e~lf~~l~~-----~~~~g~~vLDl~~G~G~~~i~a~~~ga~---vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d 98 (171)
T d1ws6a1 27 LRKALFDYLRL-----RYPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVE 98 (171)
T ss_dssp HHHHHHHHHHH-----HCTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHH
T ss_pred HHHHHHHHhhc-----cccCCCeEEEeccccchhhhhhhhccch---hhhcccCHHHHhhhhHHHHhhccccceeeeehh
Confidence 33445555532 1234567999999999999999999874 44679999999988765 565565555432
Q ss_pred C----CCCCCCCeeEEEecccccccccchHHHHHHH--HHhccCCeEEEEEeC
Q 039518 285 Q----LPYPSSSFEMVHCSRCRVDWHANDGILLKEV--DRVLRPNGYFVYSAP 331 (617)
Q Consensus 285 ~----Lpf~d~sFDlV~~s~~l~h~~~d~~~~L~el--~RvLrPGG~Liis~p 331 (617)
. ......+||+|++.- ++..+....+.++ ..+|+|||++++..+
T Consensus 99 ~~~~~~~~~~~~fD~If~DP---PY~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 99 VFLPEAKAQGERFTVAFMAP---PYAMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHHHTTCCEEEEEECC---CTTSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccccccccCCccceeEEcc---ccccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 2 223457899999753 2222333344444 357999999998764
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.44 E-value=2e-07 Score=95.10 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCC----CCCCCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQ----LPYPSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~----Lpf~d~sFDlV 296 (617)
+|.+|||+.||+|.++..++..+.. .++.+|+++.+++.|+++ ++ ++.+..+|+.+ +.-..++||+|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~--~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCc--eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 4668999999999999988877654 567789999999888865 43 35677777532 22245689999
Q ss_pred Eeccc--------ccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRC--------RVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~--------l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
++--- ......+...++..+.++|+|||.|++++.
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 97421 111112345689999999999999999875
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.35 E-value=6.3e-07 Score=87.94 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=87.3
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHAN 308 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~d 308 (617)
..+|||||||+|.++..++++.+.. .++..|..+ .++.+.. ...+.+..+|+.+ +.+ .+|++++.+++|+|.++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dlp~-vi~~~~~-~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~ 154 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQ-VVENLSG-SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDK 154 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTC-EEEEEECHH-HHTTCCC-BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCC-eEEEecCHH-HHHhCcc-cCceEEEecCccc-CCC--CCcEEEEEeecccCChH
Confidence 3569999999999999999986553 566678743 3333322 2357788888754 333 47999999999999833
Q ss_pred -hHHHHHHHHHhccCC---eEEEEEeCCCCCCCCC-------------------ChhhHHHHHHHHHHcCceEEE
Q 039518 309 -DGILLKEVDRVLRPN---GYFVYSAPPAYRKDKD-------------------YPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 309 -~~~~L~el~RvLrPG---G~Liis~p~~~~~~~~-------------------~~~~W~~le~La~~~gw~~v~ 360 (617)
-..+|+++++.|+|| |.++|.+......... ..+..+++.++++++||+.+.
T Consensus 155 ~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~ 229 (244)
T d1fp2a2 155 DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 229 (244)
T ss_dssp HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEE
Confidence 356899999999999 7788875422111110 011244588899999999876
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.33 E-value=3e-06 Score=80.53 Aligned_cols=119 Identities=12% Similarity=0.036 Sum_probs=77.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
.|.+|||+|||+|.++..++.++.. .++++|+++.+++.|+++ +....+...|...+ ++.||+|+++--..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFG 120 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCS
T ss_pred CCCEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccc
Confidence 4567999999999999998888764 678899999999999876 55677777777665 46799999875332
Q ss_pred ccccc-hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEEE
Q 039518 304 DWHAN-DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 304 h~~~d-~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~~ 361 (617)
..... ....+... +.+++.+..... .....-.-++.++...||.+...
T Consensus 121 ~~~~~~d~~~l~~~---~~~~~~v~~ih~-------~~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 121 SQRKHADRPFLLKA---FEISDVVYSIHL-------AKPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp SSSTTTTHHHHHHH---HHHCSEEEEEEE-------CCHHHHHHHHHHHHHTTEEEEEE
T ss_pred cccccccHHHHHHH---Hhhcccchhccc-------chHHHHHHHHHHHhhcCceEEEE
Confidence 21111 12233333 333444433221 11111233777888888876553
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.33 E-value=4.6e-07 Score=88.66 Aligned_cols=128 Identities=15% Similarity=0.048 Sum_probs=85.0
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc-
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH- 306 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~- 306 (617)
+..+|||||||+|.++..++++.+.. .++..|+.+. ++.+.+ ...+.+..+|+.. +.|. .|+++..++++.|.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dlp~v-i~~~~~-~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHV-IEDAPS-YPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSD 154 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTS-EEEEEECTTT-TTTCCC-CTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCC-eEEEcccHHh-hhhccc-CCceEEecccccc-cCCC--cceEEEEEEeecCCH
Confidence 34679999999999999999986543 4455676432 222221 2346777777633 3443 46677788888887
Q ss_pred cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCC---------------------ChhhHHHHHHHHHHcCceEEEE
Q 039518 307 ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKD---------------------YPLIWDKLVNLTTAMCWKLIAR 361 (617)
Q Consensus 307 ~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~---------------------~~~~W~~le~La~~~gw~~v~~ 361 (617)
++...+|+++++.|+|||.++|.+......... ..+.-++++++++++||+.+..
T Consensus 155 ~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv 230 (243)
T d1kyza2 155 EHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKV 230 (243)
T ss_dssp HHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEE
Confidence 345679999999999999999986421111111 0112345788999999987753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.32 E-value=2.3e-07 Score=88.39 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=71.7
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCCchhHHH----Hhhcc--cccccccCCCCCCCCC
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSAI----YNRGI--LGAFHDWCEPFSTYPR 528 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~~~l~~~----~~RGl--ig~~~~~~~~f~typr 528 (617)
.+..+.++|+.+ ..|||+|||.|.|+.+|.+..--|.-|=+.. +.+..+ -+.|+ +-.++.=.+.++.=+.
T Consensus 5 ~~ll~~~~l~~~--~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 5 AKLMQIAALKGN--EEVLDVATGGGHVANAFAPFVKKVVAFDLTE--DILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHHTCCSC--CEEEEETCTTCHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHhcCCCCc--CEEEEecccCcHHHHHHHHhCCEEEEEECCH--HHHhhhhhccccccccccccccccccccccccc
Confidence 345555667776 3799999999999998876644343332211 444443 23454 2233332344442138
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+||+|++..++.+. -+.+.+|-|+-|+|+|||+++|.+
T Consensus 81 ~fD~v~~~~~l~~~------~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHF------PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp CEEEEEEESCGGGC------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccccc------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999988765 246789999999999999999964
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.30 E-value=1.5e-07 Score=94.36 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=77.5
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHH----HHhhcccccccccCCCCCCCCC
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSA----IYNRGILGAFHDWCEPFSTYPR 528 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~----~~~RGlig~~~~~~~~f~typr 528 (617)
++...+.|+|++| -.|||+|||.|+|+..+.+. +.-|.-|-.. ++|+.. +.+.|+......-..-+...|.
T Consensus 41 ~~~~~~~l~l~~g--~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls--~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~ 116 (280)
T d2fk8a1 41 VDLNLDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDVNVIGLTLS--KNQHARCEQVLASIDTNRSRQVLLQGWEDFAE 116 (280)
T ss_dssp HHHHHTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTSCCSSCEEEEESCGGGCCC
T ss_pred HHHHHHHcCCCCC--CEEEEecCCchHHHHHHHHhCceeEEEecch--HHHHHHHHHHHHhhccccchhhhhhhhhhhcc
Confidence 4445555557776 57999999999999888643 5544333222 245444 4555886665555555556678
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+||.|-+..+|.+. ..+ ....++-++.|+|+|||.++|.
T Consensus 117 ~fD~i~si~~~eh~---~~~-~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 117 PVDRIVSIEAFEHF---GHE-NYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp CCSEEEEESCGGGT---CGG-GHHHHHHHHHHHSCTTCEEEEE
T ss_pred chhhhhHhhHHHHh---hhh-hHHHHHHHHHhccCCCceEEEE
Confidence 99999999999875 222 4668899999999999999986
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=5.1e-07 Score=87.50 Aligned_cols=107 Identities=10% Similarity=0.070 Sum_probs=76.4
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccC-CCeEEEEeccCCCCchhHHHHhh----ccc----ccccccCCCCC
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS-LPVWVMNIVPISMKNTLSAIYNR----GIL----GAFHDWCEPFS 524 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~-~~v~vmnv~p~~~~~~l~~~~~R----Gli----g~~~~~~~~f~ 524 (617)
++...+.+++.+| -.|||+|||.|+++.+|.. .+..|.-|=+. +.++..+-++ |+- -...|+-+.++
T Consensus 22 ~~~l~~~~~l~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s--~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~ 97 (245)
T d1nkva_ 22 YATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMS--SLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 97 (245)
T ss_dssp HHHHHHHTCCCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred HHHHHHHcCCCCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEecc--cchhhHHHHHHHHhhccccchhhhhHHhhccc
Confidence 3444566778887 4699999999999998865 46777666432 2555554444 652 23445554332
Q ss_pred CCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 525 TYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 525 typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+..||+|++.+++.+. . +...+|-||-|+|||||.+++.+
T Consensus 98 --~~~fD~v~~~~~~~~~---~---d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 98 --NEKCDVAACVGATWIA---G---GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp --SSCEEEEEEESCGGGT---S---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred --cCceeEEEEEehhhcc---C---CHHHHHHHHHHHcCcCcEEEEEe
Confidence 5899999999888765 2 45789999999999999999974
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=9.3e-07 Score=83.76 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=77.6
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC-----CCCCCeeEEE
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP-----YPSSSFEMVH 297 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp-----f~d~sFDlV~ 297 (617)
.++..+||++||+|..+..++++... ..+.++|.++.+++.|+++ +.++.+..+++..+. +..++||.|+
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl 100 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL 100 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceee
Confidence 45667999999999999999987544 3788999999999999987 345677777665542 4457899997
Q ss_pred ecccc--ccc------ccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCR--VDW------HANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l--~h~------~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.-..+ .++ .......|..+.++|+|||.+++..
T Consensus 101 ~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 101 MDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp EECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred eccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 54221 111 1234578999999999999999876
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.18 E-value=1.1e-06 Score=89.11 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC---CcEEEEecCCCC----CCCCCCeeEE
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI---GAMISALSTKQL----PYPSSSFEMV 296 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~---~~~~~~~d~~~L----pf~d~sFDlV 296 (617)
.+.+|||+.||+|.++..++..|. .++.+|.|+.+++.|+++ ++ ++.+.+.|+.+. ....+.||+|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 356799999999999999998875 567789999999999875 43 366777775332 2235689999
Q ss_pred Eecccc-------cccc--cchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCR-------VDWH--ANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l-------~h~~--~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
++.--. ..+. .+...++..+.++|+|||.+++.+
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 974110 1111 234557778889999999766654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.2e-05 Score=78.95 Aligned_cols=144 Identities=9% Similarity=0.111 Sum_probs=90.2
Q ss_pred hhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEE
Q 039518 206 APEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMIS 279 (617)
Q Consensus 206 a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~ 279 (617)
+..|...+.+++..... ......+|||+|||+|.++..|+.+... ..+.++|+++.+++.|+++ ++. +.+.
T Consensus 41 r~~~~~~i~~l~~~~~~--~~~~~~~~LDiGtGsg~I~~~l~~~~~~-~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~ 117 (250)
T d2h00a1 41 RLNYIHWVEDLIGHQDS--DKSTLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHHHCCCCG--GGCCCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHHhhhhcc--CccccceEEEeCCCchHHHHHHHHhCCC-ccccceecCHHHHHHHHHHHHHhCCCcceeee
Confidence 44677777776632211 1123457999999999999999877432 3788899999999999876 333 3343
Q ss_pred EecCCCC------CCCCCCeeEEEeccccccccc----------------------------------chHHHHHHHHHh
Q 039518 280 ALSTKQL------PYPSSSFEMVHCSRCRVDWHA----------------------------------NDGILLKEVDRV 319 (617)
Q Consensus 280 ~~d~~~L------pf~d~sFDlV~~s~~l~h~~~----------------------------------d~~~~L~el~Rv 319 (617)
..+.... ...+++||+|+|+--.+.-.+ ....++++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~ 197 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQL 197 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHH
T ss_pred eeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHH
Confidence 3332211 124568999999854432110 012356777788
Q ss_pred ccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 320 LRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 320 LrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
++..|++..-... . .....+.+++++.|+..+.
T Consensus 198 ~~~~g~~t~~ig~-----~---~~l~~i~~~L~~~g~~~i~ 230 (250)
T d2h00a1 198 KKRLRWYSCMLGK-----K---CSLAPLKEELRIQGVPKVT 230 (250)
T ss_dssp GGGBSCEEEEESS-----T---TSHHHHHHHHHHTTCSEEE
T ss_pred hhcCcEEEEEecc-----h---hhHHHHHHHHHHcCCCeEE
Confidence 8888888654320 1 1145688888899987554
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.11 E-value=5.2e-07 Score=89.41 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=66.1
Q ss_pred CCCCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCC-chhHHHHh----hccc---ccc-cccCCCCCCCCCccch
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMK-NTLSAIYN----RGIL---GAF-HDWCEPFSTYPRTYDL 532 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~-~~l~~~~~----RGli---g~~-~~~~~~f~typrtyDl 532 (617)
++++ ..|||+|||.|+++..|.++ +.-|+ -.|-. .++..+-+ .||- -+. .|+++ ++.=+.+||+
T Consensus 65 l~~~--~~vLDiGcG~G~~~~~la~~~~~~v~---gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~-l~~~~~sfD~ 138 (282)
T d2o57a1 65 LQRQ--AKGLDLGAGYGGAARFLVRKFGVSID---CLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYDF 138 (282)
T ss_dssp CCTT--CEEEEETCTTSHHHHHHHHHHCCEEE---EEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEEE
T ss_pred CCCC--CEEEEeCCCCcHHHhhhhccCCcEEE---EEeccchhhhhhhccccccccccccccccccccc-ccccccccch
Confidence 5555 58999999999999998654 43333 23322 45444443 3542 222 23332 3322389999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|.+..+|.+. . +...+|-|+-|+|||||.+++.
T Consensus 139 V~~~~~l~h~---~---d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 139 IWSQDAFLHS---P---DKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp EEEESCGGGC---S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhccchhhhc---c---CHHHHHHHHHHhcCCCcEEEEE
Confidence 9999988765 3 3568999999999999999996
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.09 E-value=1.6e-06 Score=83.18 Aligned_cols=100 Identities=13% Similarity=0.333 Sum_probs=69.8
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHH----hhcc--cccccccCCCCCCCC-Cccch
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIY----NRGI--LGAFHDWCEPFSTYP-RTYDL 532 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~----~RGl--ig~~~~~~~~f~typ-rtyDl 532 (617)
+.+++|. .|||+|||.|.++..|.+..- +|.=.|-. +.|..+- ++|+ +-.+..=.+.++ +| .+||+
T Consensus 12 ~~~~~~~--rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 85 (234)
T d1xxla_ 12 AECRAEH--RVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDI 85 (234)
T ss_dssp HTCCTTC--EEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEE
T ss_pred hCCCCCC--EEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccccccccccccccccc-ccccccce
Confidence 3477774 499999999999999987532 44444544 5565543 3443 233332233344 34 89999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|.+.++|.+. -+...+|-|+.|+|+|||++++.+
T Consensus 86 v~~~~~l~~~------~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 86 ITCRYAAHHF------SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp EEEESCGGGC------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeceeecc------cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 9999888754 247899999999999999999863
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.06 E-value=6.4e-06 Score=77.00 Aligned_cols=113 Identities=10% Similarity=0.028 Sum_probs=79.1
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEe
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISAL 281 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~ 281 (617)
..-+.+-+++... -.+.+|||+.||+|.++...+.+|.. .++.+|.+..+++.++++ +. ++.+...
T Consensus 27 ~vrealFn~l~~~------~~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~ 98 (182)
T d2fhpa1 27 KVKESIFNMIGPY------FDGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKM 98 (182)
T ss_dssp HHHHHHHHHHCSC------CSSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred HHHHHHHHHHHHh------cCCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Confidence 3444555565321 24667999999999999999999876 677789999999988775 33 4567777
Q ss_pred cCCCC----CCCCCCeeEEEecccccccc-cchHHHHHHHHH--hccCCeEEEEEeC
Q 039518 282 STKQL----PYPSSSFEMVHCSRCRVDWH-ANDGILLKEVDR--VLRPNGYFVYSAP 331 (617)
Q Consensus 282 d~~~L----pf~d~sFDlV~~s~~l~h~~-~d~~~~L~el~R--vLrPGG~Liis~p 331 (617)
|+.+. .-....||+|++-- ++. .+....+..+.. +|++||.+++..+
T Consensus 99 D~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 99 DANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cchhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 75331 12356799999653 232 345667777754 6999999998654
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.06 E-value=2.1e-06 Score=82.46 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=68.2
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CC-----CCCCCeeEEE
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LP-----YPSSSFEMVH 297 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lp-----f~d~sFDlV~ 297 (617)
.+|||||||+|..+..|++.-.....+..+|+++.+.+.|+++ |. .+.+..++..+ ++ +..++||+|+
T Consensus 58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~if 137 (214)
T d2cl5a1 58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVF 137 (214)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEE
T ss_pred CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceee
Confidence 3599999999999999987522223677779999999888754 54 37778777533 22 3457899998
Q ss_pred ecccccccccc--hHHHHHHHHHhccCCeEEEEE
Q 039518 298 CSRCRVDWHAN--DGILLKEVDRVLRPNGYFVYS 329 (617)
Q Consensus 298 ~s~~l~h~~~d--~~~~L~el~RvLrPGG~Liis 329 (617)
.- ++... ....+.+..++|||||.+++.
T Consensus 138 iD----~~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 138 LD----HWKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EC----SCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred ec----ccccccccHHHHHHHhCccCCCcEEEEe
Confidence 64 33322 234578888999999987663
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.05 E-value=1.3e-06 Score=87.71 Aligned_cols=112 Identities=9% Similarity=0.139 Sum_probs=75.8
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhcc---CCCeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCCCcc
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALN---SLPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTY 530 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~---~~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typrty 530 (617)
++.+.+.++|++| ..|||+|||.||+|-++. .-.|-.+++.+....---..+.+.|+.+-..--+.-+...|-+|
T Consensus 51 ~~~~~~~l~l~~G--~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 51 IDLALGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHHTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcCCCCC--CEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 4556677778888 569999999999987653 33455555544333212234567777665544444444557789
Q ss_pred chhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 531 DLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 531 Dl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|-|=+-+.|.+. .+ =....++-|+.|+|+|||.+++.
T Consensus 129 D~i~si~~~eh~---~~-~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 129 DRIVSIGAFEHF---GH-ERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp SEEEEESCGGGT---CT-TTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cceeeehhhhhc---Cc-hhHHHHHHHHHhhcCCCCcEEEE
Confidence 988877777754 21 13457899999999999999984
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.5e-06 Score=82.98 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=77.3
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cc--ccccc-ccCCCCCCCCCccchhhccccc
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GI--LGAFH-DWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Gl--ig~~~-~~~~~f~typrtyDl~H~~~~~ 539 (617)
-..|||+|||.|.++..|+.+... .|.=.|-. +.|..+-++ |. +-.++ |. +.++.-+.+||+|.+..++
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~-~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESCG
T ss_pred CCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccc-ccccccccccccccccccc
Confidence 467999999999999887654332 11112333 566555444 22 11111 22 2244335899999999988
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEecCh---------------HHHHHHHhhhhcCCceEEEee
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK---------------SLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~---------------~~~~~~~~~~~~~~W~~~~~~ 595 (617)
.+. .+. .+..+|-|+=|+|+|||.+++.|.. -..++++++.+.--+++.-.+
T Consensus 138 ~h~---~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 138 GHL---TDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp GGS---CHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred ccc---hhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 865 221 2456899999999999999997321 135677888877777765443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.03 E-value=1.5e-05 Score=80.35 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=75.8
Q ss_pred CCCeEEEECCCCcHHHHHhcc----CCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCCCCCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLP----LDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~----~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
.+.+|||.+||+|.++..+.+ .......+.++|+++.+++.|+.+ +....+...+.... .+...||+|+++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~N 195 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 195 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-cccccccccccC
Confidence 455799999999999887753 334455788999999999888754 56666666664332 345789999998
Q ss_pred cccccccc-----------------chHHHHHHHHHhccCCeEEEEEeCCCC
Q 039518 300 RCRVDWHA-----------------NDGILLKEVDRVLRPNGYFVYSAPPAY 334 (617)
Q Consensus 300 ~~l~h~~~-----------------d~~~~L~el~RvLrPGG~Liis~p~~~ 334 (617)
--...... -...++..+.+.|+|||++++..|...
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~ 247 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAM 247 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGG
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcc
Confidence 43321110 012368899999999999999988543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=5.7e-06 Score=77.27 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=70.6
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC-CcEEEEecCCC-CCCCCCCeeEEEecccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI-GAMISALSTKQ-LPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlV~~s~~l 302 (617)
+.+|||++||+|.++...+.+|.. .++.+|.+..+++.++++ +. +..+...|+.. +.....+||+|++--
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP-- 119 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP-- 119 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC--
T ss_pred hhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcC--
Confidence 346999999999999999999986 567789999999988765 23 34555555432 333567899999753
Q ss_pred cccc-cchHHHHHHHHH--hccCCeEEEEEeC
Q 039518 303 VDWH-ANDGILLKEVDR--VLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~-~d~~~~L~el~R--vLrPGG~Liis~p 331 (617)
++. ......+..+.+ +|+++|.+++..+
T Consensus 120 -PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 120 -PFRRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp -SSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -ccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 233 234556666654 6999999999653
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=3.5e-06 Score=81.28 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=71.0
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCCC-CC-----CCCCCeeEEE
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTKQ-LP-----YPSSSFEMVH 297 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~~-Lp-----f~d~sFDlV~ 297 (617)
++|||||||+|..+.++++.-.....+..+|.++...+.|++. |. .+.+..+++.+ ++ ...++||+|+
T Consensus 61 k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~if 140 (219)
T d2avda1 61 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAV 140 (219)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEE
T ss_pred CeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEE
Confidence 4599999999999999987522122666778888888888765 33 36677776422 22 2357899999
Q ss_pred ecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 298 CSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 298 ~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.- +...+....+..+.++|+|||.+++..
T Consensus 141 iD----~dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 141 VD----ADKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EC----SCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred Ee----CCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 54 344456778899999999999999964
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.99 E-value=1.9e-06 Score=86.72 Aligned_cols=112 Identities=9% Similarity=0.101 Sum_probs=78.0
Q ss_pred HHHHHHHhccCCCCCeeeEEeccccccchhhhcc-CCCeEEEEeccCCCCchhHH----HHhhcccccccccCCCCCCCC
Q 039518 453 QVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALN-SLPVWVMNIVPISMKNTLSA----IYNRGILGAFHDWCEPFSTYP 527 (617)
Q Consensus 453 ~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~-~~~v~vmnv~p~~~~~~l~~----~~~RGlig~~~~~~~~f~typ 527 (617)
.++...+.++|+.| -.|||+|||.||++.++. ..++-|.-|-.. ++|+.. +-+.||....+.-+.-+.+.+
T Consensus 49 k~~~~~~~l~l~~G--~~VLDiGCG~G~~~~~~a~~~g~~v~git~s--~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 124 (291)
T d1kpia_ 49 KRKLALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLS--ENQYAHDKAMFDEVDSPRRKEVRIQGWEEFD 124 (291)
T ss_dssp HHHHHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHSCCSSCEEEEECCGGGCC
T ss_pred HHHHHHHhcCCCCC--CEEEEecCcchHHHHHHHHhcCcceeeccch--HHHHHHHHHHHHhhccchhhhhhhhcccccc
Confidence 35556677778888 469999999999998875 456644444222 244433 455688766555455555556
Q ss_pred CccchhhccccccccccCCCC------CChhhHHhhhhhcccCCceEEEe
Q 039518 528 RTYDLLHANHLFSHYKNRGEV------CSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~------c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+||-|=+-+.|.+. .+. =....++=++.|+|+|||.+++.
T Consensus 125 ~~fD~i~sie~~eH~---~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 125 EPVDRIVSLGAFEHF---ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCCSEEEEESCGGGT---TCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred cccceEeechhHHhc---chhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 899988888888865 221 12458999999999999999985
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.96 E-value=2.3e-06 Score=80.46 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=71.3
Q ss_pred HHHHHHHhcc--CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccccccccCC---C
Q 039518 453 QVRHYWQLMN--VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCE---P 522 (617)
Q Consensus 453 ~v~~y~~~~~--~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~---~ 522 (617)
++.....++. +..+ -.|||+|||.|.++..|.+...= |.-.|-. +.+..+-++ |..-. ..|. .
T Consensus 23 ~~~~~~~~~~~~l~~~--~~ILDiGcG~G~~~~~la~~~~~---v~giD~S~~~i~~ak~~~~~~~~~~~--~~~~d~~~ 95 (226)
T d1ve3a1 23 RIETLEPLLMKYMKKR--GKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKAREYAKSRESNVE--FIVGDARK 95 (226)
T ss_dssp HHHHHHHHHHHSCCSC--CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCCCE--EEECCTTS
T ss_pred HHHHHHHHHHHhcCCC--CEEEEECCCcchhhhhHhhhhcc---cccccccccchhhhhhhhcccccccc--cccccccc
Confidence 3444444433 4444 25899999999999999877653 3333444 677666554 32111 1222 1
Q ss_pred CCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 523 FSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 523 f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
++-...+||+|.+..++.++ ..-++..+|-|+-|+|+|||.+++...
T Consensus 96 l~~~~~~fD~I~~~~~l~~~----~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 96 LSFEDKTFDYVIFIDSIVHF----EPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CCSCTTCEEEEEEESCGGGC----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccCcCceEEEEecchhhC----ChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 22223899999999988864 222466789999999999999998753
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=97.96 E-value=5.2e-06 Score=78.95 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=66.1
Q ss_pred eEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhccccc-ccccCCCCCCCCCccchhhcc-ccccccccCC
Q 039518 470 NAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGA-FHDWCEPFSTYPRTYDLLHAN-HLFSHYKNRG 546 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~-~~~~~~~f~typrtyDl~H~~-~~~s~~~~~~ 546 (617)
.|||+|||.|.++-.|.+..-=|..| |-. ..+..+-++|..-. ..+- +.++.-+.+||+|-+. +++.+. .
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~~v~gi---D~s~~~l~~a~~~~~~~~~~~~~-~~l~~~~~~fD~ii~~~~~~~~~---~ 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGFEVVLV---DPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSYV---E 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEEE---ESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHHC---S
T ss_pred EEEEECCCCchhcccccccceEEEEe---ecccccccccccccccccccccc-cccccccccccceeeecchhhhh---h
Confidence 58999999999999998876534333 444 78888999985322 2222 3344223899998864 455543 2
Q ss_pred CCCChhhHHhhhhhcccCCceEEEec
Q 039518 547 EVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 547 ~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+...+|-|+-|+|+|||.+++..
T Consensus 118 ---d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 118 ---NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hHHHHHHHHHhhcCcCcEEEEEE
Confidence 24568889999999999999973
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.2e-05 Score=77.20 Aligned_cols=124 Identities=9% Similarity=0.031 Sum_probs=73.6
Q ss_pred CeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----c--------------ccccc-----------
Q 039518 467 EIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----G--------------ILGAF----------- 516 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----G--------------lig~~----------- 516 (617)
.=..|||+|||.|.++..+.+.... +|+=.|-. +.+..+-++ + +-|.+
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 3467999999999998877666543 23333333 444444332 0 00111
Q ss_pred --------cccCC--CCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh-----------
Q 039518 517 --------HDWCE--PFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK----------- 574 (617)
Q Consensus 517 --------~~~~~--~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~----------- 574 (617)
++-.. ....+| .+||+|-+..++.++. ..+=....++-+|-|+|||||++|+.+-.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~--~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~ 206 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC--CSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE 206 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC--SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhc--ccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccc
Confidence 11111 112233 7999999888877540 11113446889999999999999997421
Q ss_pred -----HHHHHHHhhhhcCCceEEEe
Q 039518 575 -----SLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 575 -----~~~~~~~~~~~~~~W~~~~~ 594 (617)
-..+.++++++.--+++.-.
T Consensus 207 ~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 207 FSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccccCCCHHHHHHHHHHCCCEEEEE
Confidence 12567777777766765433
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=2.8e-06 Score=83.88 Aligned_cols=92 Identities=11% Similarity=0.132 Sum_probs=60.2
Q ss_pred CCCeeeEEeccccccchhhhccCC--CeEEEEeccCCCC-chhHHHHhhcc-cccccccCCCCCCCCCccchhhcccccc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSL--PVWVMNIVPISMK-NTLSAIYNRGI-LGAFHDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~-~~l~~~~~RGl-ig~~~~~~~~f~typrtyDl~H~~~~~s 540 (617)
..+-.+|||+|||.|.|+.+|.+. ++-++-| |-. ..+..+-+|+- +.....=.+.++.-+.+||+|.+...+.
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~gi---D~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 158 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGL---DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC 158 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEe---cchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH
Confidence 344578999999999999998654 4444433 433 66777777652 1111111223333348999998654433
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
-+-||.|+|||||++++..
T Consensus 159 -------------~~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 159 -------------KAEELARVVKPGGWVITAT 177 (268)
T ss_dssp -------------CHHHHHHHEEEEEEEEEEE
T ss_pred -------------HHHHHHHHhCCCcEEEEEe
Confidence 1579999999999999973
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.91 E-value=2.6e-06 Score=81.85 Aligned_cols=110 Identities=14% Similarity=0.237 Sum_probs=71.0
Q ss_pred HHHHHHHhcc-CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccccccc--ccCCCCC
Q 039518 453 QVRHYWQLMN-VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGILGAFH--DWCEPFS 524 (617)
Q Consensus 453 ~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGlig~~~--~~~~~f~ 524 (617)
.+..+.+++. ......+.|||+|||.|.++..|.+...=|.-| |-. +-|..+-+ +|+-..++ |. +.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gv---D~s~~mi~~a~~~~~~~~~~i~~~~~d~-~~l~ 101 (251)
T d1wzna1 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGL---DLHEEMLRVARRKAKERNLKIEFLQGDV-LEIA 101 (251)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEE---ESCHHHHHHHHHHHHHTTCCCEEEESCG-GGCC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEE---eeccccccccccccccccccchheehhh-hhcc
Confidence 3334444444 445556799999999999999998776533333 433 55554444 35422222 22 3333
Q ss_pred CCCCccchhhcc-ccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 525 TYPRTYDLLHAN-HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 525 typrtyDl~H~~-~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
+|.+||+|.+. +.|.+. +.-.....|-++-|+|+|||++|+.
T Consensus 102 -~~~~fD~I~~~~~~~~~~----~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 102 -FKNEFDAVTMFFSTIMYF----DEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp -CCSCEEEEEECSSGGGGS----CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -cccccchHhhhhhhhhcC----ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 56899999875 455532 2235567899999999999999984
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=97.88 E-value=2.5e-06 Score=81.61 Aligned_cols=90 Identities=17% Similarity=0.288 Sum_probs=61.2
Q ss_pred eEEeccccccchhhhccCC--CeEEEEeccCCCCchhHHHHhhc---ccccccccCCCCCCCCCccchhhcccccccccc
Q 039518 470 NAMDMNAYCGGFAVALNSL--PVWVMNIVPISMKNTLSAIYNRG---ILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKN 544 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~--~v~vmnv~p~~~~~~l~~~~~RG---lig~~~~~~~~f~typrtyDl~H~~~~~s~~~~ 544 (617)
+|||+|||.|.|+..|.+. .|..+... ++.+..+-+|. +-=+..+.. .++ .|.+||+|-+.++|.+.
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~~v~giD~s----~~~i~~a~~~~~~~~~~~~~~~~-~~~-~~~~fD~I~~~~vleh~-- 94 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFNDITCVEAS----EEAISHAQGRLKDGITYIHSRFE-DAQ-LPRRYDNIVLTHVLEHI-- 94 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEEESC----HHHHHHHHHHSCSCEEEEESCGG-GCC-CSSCEEEEEEESCGGGC--
T ss_pred cEEEEeCCCcHHHHHHHHcCCeEEEEeCc----HHHhhhhhccccccccccccccc-ccc-cccccccccccceeEec--
Confidence 5999999999999999765 44443321 14555554442 211222222 233 26999999999999864
Q ss_pred CCCCCChhhHHhhh-hhcccCCceEEEe
Q 039518 545 RGEVCSLEDIMLEM-DLIIRPQGFIIIR 571 (617)
Q Consensus 545 ~~~~c~~~~~l~e~-dRilRP~G~~i~~ 571 (617)
. +...+|.|+ +|+|+|||++++.
T Consensus 95 -~---d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 95 -D---DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp -S---SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -C---CHHHHHHHHHHHhcCCCceEEEE
Confidence 2 345778898 6999999999985
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.88 E-value=1.7e-06 Score=84.86 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=77.4
Q ss_pred CCCCCeeeEEeccccccchhhhccCC---CeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCCCccchhh
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL---PVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~---~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typrtyDl~H 534 (617)
+....-.+|||+|||.|.++..|+.+ .|..+ |.. ..|..+-++ +.+-.++.=-+.|+.=+.+||+|.
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~v-----D~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~ 163 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV 163 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEE-----ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcCceEEEE-----cCCHHHHHhhhccccccccceeEEccccccccCCCccceEE
Confidence 34445678999999999999987643 23332 222 455544433 222222111122332248999999
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChH----------------HHHHHHhhhhcCCceEEEeec
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKS----------------LITRIRDLAPKFLWDVELHSL 596 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~----------------~~~~~~~~~~~~~W~~~~~~~ 596 (617)
+..+|-++ .+. .+..+|-++-|+|+|||+++|.|... ..++++++.+.--+++...+.
T Consensus 164 ~~~vl~hl---~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 164 IQWTAIYL---TDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EESCGGGS---CHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred eecccccc---chh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 99998865 211 24577999999999999999974320 134566777666666655443
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.79 E-value=2.8e-05 Score=77.19 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=73.3
Q ss_pred eEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC--cEEEEecCCC-CCCCCCCeeEEEeccccc
Q 039518 231 QVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG--AMISALSTKQ-LPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~--~~~~~~d~~~-Lpf~d~sFDlV~~s~~l~ 303 (617)
+|||+|||+|..+..+++. .. ..+.++|+|+.+++.|+++ +.. +.+...+... ++...+.||+|+|+--.+
T Consensus 113 ~vld~g~GsG~i~~~la~~-~~-~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 113 TVADIGTGSGAIGVSVAKF-SD-AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp EEEEESCTTSHHHHHHHHH-SS-CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred EEEEeeeeeehhhhhhhhc-cc-ceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 4999999999999888764 22 2678899999999999876 443 3444555432 232346899999983221
Q ss_pred ccc--------cchH----------HHH-HHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCc
Q 039518 304 DWH--------ANDG----------ILL-KEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCW 356 (617)
Q Consensus 304 h~~--------~d~~----------~~L-~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw 356 (617)
.-. -+|. .++ +=+.+.|+|||++++.... .. -+.+.+++++.||
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~------~Q---~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE------DQ---VEELKKIVSDTVF 253 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT------TC---HHHHTTTSTTCEE
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH------HH---HHHHHHHHHhCCE
Confidence 100 0111 122 2256789999999996531 11 3446666666665
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=97.79 E-value=4e-06 Score=81.78 Aligned_cols=105 Identities=20% Similarity=0.313 Sum_probs=67.6
Q ss_pred CCCCCeeeEEeccccccchhhhccCC--Ce--EEEEeccCCCCchhHHHHhhcccccccccC-CCCCCCCCccchhhccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL--PV--WVMNIVPISMKNTLSAIYNRGILGAFHDWC-EPFSTYPRTYDLLHANH 537 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~--~v--~vmnv~p~~~~~~l~~~~~RGlig~~~~~~-~~f~typrtyDl~H~~~ 537 (617)
++...+++|||+|||.|.++.+|..+ .+ .+... |......-+.+-+.|+..-..-.. ..|...|..||+|.+.+
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~ 154 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF 154 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEES
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeecc
Confidence 56678899999999999999999643 33 33332 211111222344556533221111 12344567899999998
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
++-+| .+. ....+|-|+=|.|+|||.++|.|
T Consensus 155 vlh~~---~d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 155 VLLNW---PDH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp CGGGS---CHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccC---Cch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 88766 221 22368999999999999999964
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.78 E-value=4.9e-06 Score=77.79 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=67.7
Q ss_pred CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCCchhHH----HHhhccc---ccccccCCCCCCCCCccchhhc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMKNTLSA----IYNRGIL---GAFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~~~l~~----~~~RGli---g~~~~~~~~f~typrtyDl~H~ 535 (617)
+..| .|||+|||.|.++-+|.++..=|..|=+.. ..|.. +-+.|+- ....|.++.. ++.+||+|.+
T Consensus 29 ~~~g---rvLDiGcG~G~~~~~la~~g~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~I~~ 101 (198)
T d2i6ga1 29 VAPG---RTLDLGCGNGRNSLYLAANGYDVTAWDKNP--ASMANLERIKAAEGLDNLQTDLVDLNTLT--FDGEYDFILS 101 (198)
T ss_dssp SCSC---EEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCTTEEEEECCTTTCC--CCCCEEEEEE
T ss_pred CCCC---cEEEECCCCCHHHHHHHHHhhhhccccCcH--HHHHHHHHHhhhccccchhhhheeccccc--ccccccEEEE
Confidence 4555 499999999999999988765444442322 33433 3344542 3334444433 4689999999
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
..+|.+. ..=....+|-++-|+|+|||++++.
T Consensus 102 ~~~~~~~----~~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 102 TVVMMFL----EAQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp ESCGGGS----CTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeeeecC----CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9998753 3334667999999999999999986
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.77 E-value=5.8e-06 Score=77.89 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccccccc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCRVDWH 306 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~ 306 (617)
..+.+|||.|||+|.|+..+.++......+.++|+++..+..+. ...+..++..... ....||+|+++.-.....
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----~~~~~~~~~~~~~-~~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----WAEGILADFLLWE-PGEAFDLILGNPPYGIVG 92 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----TEEEEESCGGGCC-CSSCEEEEEECCCCCCBS
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----cceeeeeehhccc-cccccceecccCcccccc
Confidence 34568999999999999888765444446778888876543322 2455565554433 356799999874322111
Q ss_pred --c-------------------------c-hHHHHHHHHHhccCCeEEEEEeCCCCC
Q 039518 307 --A-------------------------N-DGILLKEVDRVLRPNGYFVYSAPPAYR 335 (617)
Q Consensus 307 --~-------------------------d-~~~~L~el~RvLrPGG~Liis~p~~~~ 335 (617)
. + ...++..+.+.|+|||++++..|....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l 149 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWL 149 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGG
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeec
Confidence 0 0 134678899999999999999885443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=97.74 E-value=7e-06 Score=78.19 Aligned_cols=98 Identities=10% Similarity=0.152 Sum_probs=73.1
Q ss_pred eeEEeccccccchhhhccC---CCeEEEEeccCCCC-chhHHHHhh----cccccccccCCCCCCCC-Cccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTLSAIYNR----GILGAFHDWCEPFSTYP-RTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~~~~~~~f~typ-rtyDl~H~~~~~ 539 (617)
..|||+|||.|..+.+|.. .|-+ +|.=.|-. ..|..+-++ +....++-.+..+..+| ..+|++.+..++
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~~~~--~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCCSSC--EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred CEEEEeccchhhHHHHHHHhhcCCCC--ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence 3699999999998876643 2322 33344555 677777655 67888888888877777 789999988877
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+. +.=+...+|-||=|.|+|||.+|+.|
T Consensus 119 ~~~----~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 119 QFL----PPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GGS----CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc----ChhhHHHHHHHHHHhCCCCceeeccc
Confidence 642 33345689999999999999999974
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.72 E-value=2.3e-05 Score=77.87 Aligned_cols=116 Identities=15% Similarity=0.075 Sum_probs=79.0
Q ss_pred hHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC-------------
Q 039518 207 PEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------------- 273 (617)
Q Consensus 207 ~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------------- 273 (617)
..|.+.+....-... ....+||.+|+|.|..+..+++.... .++.+|+++..++.|++..
T Consensus 56 ~~Yhe~l~~~~l~~~-----~~p~~vLiiG~G~G~~~~~~l~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~ 128 (276)
T d1mjfa_ 56 RSYHEPLVHPAMLAH-----PKPKRVLVIGGGDGGTVREVLQHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNG 128 (276)
T ss_dssp HHHHHHHHHHHHHHS-----SCCCEEEEEECTTSHHHHHHTTSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTT
T ss_pred hHHHHHhhcchhhcC-----CCCceEEEecCCchHHHHHHHHhCCc--eEEEecCCHHHHHHHHHhhhhccchhhhhhcc
Confidence 357666544221111 23457999999999999998887653 6777899999999998642
Q ss_pred --CCcEEEEecCCCCCCCCCCeeEEEeccccccccc----chHHHHHHHHHhccCCeEEEEEe
Q 039518 274 --IGAMISALSTKQLPYPSSSFEMVHCSRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 274 --~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+.+...|+...--.+++||+|++- +..+... .-.++++.+.+.|+|||.+++-.
T Consensus 129 ~d~rv~i~~~Da~~~l~~~~~yDvIi~D-~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 129 KHEKAKLTIGDGFEFIKNNRGFDVIIAD-STDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CCSSEEEEESCHHHHHHHCCCEEEEEEE-CCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceEEEChHHHHHhccCCCCEEEEe-CCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 34677777753321135689999963 2222221 12578999999999999998865
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=1.5e-05 Score=78.25 Aligned_cols=95 Identities=8% Similarity=0.155 Sum_probs=60.4
Q ss_pred eEEeccccccchhhhccCC------CeEEEEeccCCCC-chhHHHHhh-----cccccccccCCC-C--------CCC-C
Q 039518 470 NAMDMNAYCGGFAVALNSL------PVWVMNIVPISMK-NTLSAIYNR-----GILGAFHDWCEP-F--------STY-P 527 (617)
Q Consensus 470 n~mDm~~~~g~faa~l~~~------~v~vmnv~p~~~~-~~l~~~~~R-----Glig~~~~~~~~-f--------~ty-p 527 (617)
+|||+|||.|.|...|++. ++ ...++=+|.. ..+..+-+| .+-.+-.+|... + ... +
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~-~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCC-ceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 5999999999997766431 22 1222223433 455555444 222222233221 1 112 4
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+||+|+|.++|.+. . ++...|-+|-|+|+|||+++|.
T Consensus 122 ~~fD~I~~~~~l~~~---~---d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYV---K---DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CCEEEEEEESCGGGC---S---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEEccceecC---C---CHHHHHHHHHhhCCCCCEEEEE
Confidence 899999999998864 2 4678999999999999998875
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.68 E-value=2.1e-05 Score=77.90 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCeeeEEeccccccchhhhccC---CCeEEEEeccCCCC-chhHHHHhh----cccc--cccccCCCCCCCCCccchhhc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTLSAIYNR----GILG--AFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l~~~~~R----Glig--~~~~~~~~f~typrtyDl~H~ 535 (617)
.+-++|||+|||.|.++..|.+ ...-|.-| |-. +.+..+-++ |+-- ...|.. .++ ++.+||+|++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~gi---D~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~~~-~~~~fD~v~~ 100 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAIC 100 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEE---ECCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEE---ecchhHhhhhhcccccccccccccccccc-ccc-ccCCceEEEE
Confidence 3447899999999999877754 23333333 333 444444333 3311 122332 333 4689999999
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+++.+. . +...+|-||-|+|+|||++++.|
T Consensus 101 ~~~l~~~---~---d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 101 HAFLLHM---T---TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp ESCGGGC---S---SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehhhhcC---C---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 9999864 2 35689999999999999999864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=6.5e-06 Score=79.14 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=61.3
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc------ccccccccCCCCCCCC-Cccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG------ILGAFHDWCEPFSTYP-RTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG------lig~~~~~~~~f~typ-rtyDl~H~~~~~s 540 (617)
.+|||+|||.|.++.+|.+.+.- +|+=.|-. ..+..+-++. +..+.+++..-...+| .+||+|-.+...+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~~--~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCCC--eEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 57999999999999999776531 23333433 5666665553 2233444443333334 6777765333333
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+ ...+.-..+.++-|+=|+|||||.+++-
T Consensus 133 ~~-~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 133 SE-ETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp BG-GGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cc-ccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 22 1122233457889999999999999884
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=97.65 E-value=8.8e-06 Score=78.99 Aligned_cols=112 Identities=13% Similarity=0.192 Sum_probs=68.6
Q ss_pred CCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----cc----ccccccC-CCCCCCCCccch
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----IL----GAFHDWC-EPFSTYPRTYDL 532 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----li----g~~~~~~-~~f~typrtyDl 532 (617)
++.+ .+|||+|||.|+++..+.+.+.- +|+=.|-. ..|..+-+|- .. -...|.. +.+. -..+||+
T Consensus 22 ~~~~--~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~~~~fD~ 96 (252)
T d1ri5a_ 22 TKRG--DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDV 96 (252)
T ss_dssp CCTT--CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEE
T ss_pred CCCc--CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-ccccceE
Confidence 3444 57999999999999888765542 22333444 6777776652 11 1112221 2221 1379999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe--cChHHHHHHH
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR--DEKSLITRIR 581 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~--d~~~~~~~~~ 581 (617)
|-+...+-++- .+.=.+..+|-||-|+|+|||++|+. |...++..++
T Consensus 97 V~~~~~l~~~~--~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~ 145 (252)
T d1ri5a_ 97 ISSQFSFHYAF--STSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYK 145 (252)
T ss_dssp EEEESCGGGGG--SSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHH
T ss_pred EEEcceeeecC--CCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHH
Confidence 98876665430 11123457899999999999999985 4444444443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.63 E-value=0.00014 Score=73.37 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=73.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC----------CCcEEEEecCCCC-CCCCCCeeEEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG----------IGAMISALSTKQL-PYPSSSFEMVH 297 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg----------~~~~~~~~d~~~L-pf~d~sFDlV~ 297 (617)
.++||.||.|.|..+..+++... ...++.+|+++..++.|++.. ..+.+..+|.... .-.++.||+|+
T Consensus 78 pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 78 PKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred cceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 45699999999999999987642 337888999999999998752 2467777775332 22356799999
Q ss_pred eccccccccc-------chHHHHHHHHHhccCCeEEEEEeC
Q 039518 298 CSRCRVDWHA-------NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 298 ~s~~l~h~~~-------d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.-. ...+.. .-.++++.+.+.|+|||.+++-..
T Consensus 157 ~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 157 IDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 532 222211 125789999999999999988653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.59 E-value=1.5e-05 Score=77.20 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=69.3
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC--CcEEEEecCC-CCC------CCCCCeeEE
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI--GAMISALSTK-QLP------YPSSSFEMV 296 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~--~~~~~~~d~~-~Lp------f~d~sFDlV 296 (617)
++|||||+++|.-+..|++.-.....++.+|.++...+.|++. |. .+.+..+++. .++ ...++||+|
T Consensus 61 k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~i 140 (227)
T d1susa1 61 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI 140 (227)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEE
T ss_pred CcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEE
Confidence 3599999999999999985421112566678888888888764 44 3667776642 222 125689999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+.- ++.......+..+.++|+|||.+++..
T Consensus 141 FiD----a~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 141 FVD----ADKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEC----SCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred Eec----cchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 843 444566788999999999999999964
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.54 E-value=8e-05 Score=72.19 Aligned_cols=71 Identities=8% Similarity=0.034 Sum_probs=56.7
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
+.++++|||||||+|.++..|++.+. .++++|+++.+++..+++. .++.+..+|+..++++......|+++
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~N 92 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGN 92 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceeeee
Confidence 45677899999999999999998765 5677899999999988874 34788889988887766554556655
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.51 E-value=4.6e-05 Score=71.04 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccc-----cccccCCCCCCCCCccchhh
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILG-----AFHDWCEPFSTYPRTYDLLH 534 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig-----~~~~~~~~f~typrtyDl~H 534 (617)
...-.+|||+|||.|.++.+|.+..- +|.-.|-. ..+..+-++ |+-. +..|+-+.++ +.+||+|-
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--~~~fD~Ii 124 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKII 124 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEE
T ss_pred cCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--cCCceEEE
Confidence 33446899999999999888865421 22223443 445444332 3321 2234444433 58999999
Q ss_pred ccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-ChHHHHHHHhhhhcCCceEEEeeccccCCCceeEEEEEe
Q 039518 535 ANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-EKSLITRIRDLAPKFLWDVELHSLENREKKMESVLICRK 611 (617)
Q Consensus 535 ~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k 611 (617)
++..|.. ..=.++.++-++.|+|+|||.+++.- ....-+.+.+.++..-+++..... ..+=+|+-++|
T Consensus 125 ~~~p~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~----~~gf~vl~a~K 193 (194)
T d1dusa_ 125 TNPPIRA-----GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTI----KGGYRVLKSKK 193 (194)
T ss_dssp ECCCSTT-----CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEE----ETTEEEEEEEC
T ss_pred EcccEEe-----cchhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEe----cCCcEEEEEEE
Confidence 8777642 11123567889999999999877642 222223444444444444443321 12346777776
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=97.47 E-value=4.6e-05 Score=73.11 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh----cccccc--ccc
Q 039518 447 TSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR----GILGAF--HDW 519 (617)
Q Consensus 447 ~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R----Glig~~--~~~ 519 (617)
.+.|.+.+..+....+.. -++|||+|||.|.++-.|.+... .|+=.|.. +.|..+-+| |+--.+ .|.
T Consensus 20 y~~~~~~~~~~~~~~~~~---~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~ 93 (246)
T d1y8ca_ 20 YKKWSDFIIEKCVENNLV---FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHHHTTTCC---TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG
T ss_pred HHHHHHHHHHHHHHhCCC---CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccch
Confidence 345555554444322222 25799999999999999988775 33444655 667776665 432111 133
Q ss_pred CCCCCCCCCccchhhcc-ccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 520 CEPFSTYPRTYDLLHAN-HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 520 ~~~f~typrtyDl~H~~-~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+ |+ .+++||+|=+. +.|.+. .+.=.+..+|-+|-|.|+|||.+|+.
T Consensus 94 ~~-~~-~~~~fD~i~~~~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 94 SN-LN-INRKFDLITCCLDSTNYI---IDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GG-CC-CSCCEEEEEECTTGGGGC---CSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hh-hc-ccccccccceeeeeeecc---CCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 22 33 26899987542 344432 23234556899999999999999974
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=97.46 E-value=1.1e-05 Score=78.93 Aligned_cols=106 Identities=13% Similarity=0.196 Sum_probs=68.6
Q ss_pred CCCCCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhhcccccccccC-CCCCCCCCccchhhccc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNRGILGAFHDWC-EPFSTYPRTYDLLHANH 537 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~-~~f~typrtyDl~H~~~ 537 (617)
++...++.|||+|||.|.++.+|.++ .+.++.+ |......-..+-+.|+-....-.. ..|..-|..||++...+
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~ 155 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 155 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccc
Confidence 45677899999999999999999753 3445442 321112223344556543221111 12333567899999988
Q ss_pred cccccccCCCCCChhhHHhhhhhcccCCceEEEecC
Q 039518 538 LFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE 573 (617)
Q Consensus 538 ~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~ 573 (617)
++-+| .+ =....+|-++=|.|+|||.++|-|.
T Consensus 156 vLh~~---~d-~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 156 VLLNW---SD-EDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp CGGGS---CH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccc---Cc-HHHHHHHHHHHhhcCCcceeEEEEe
Confidence 88766 21 1224678899999999999998754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=97.46 E-value=3.6e-05 Score=75.62 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=69.7
Q ss_pred eeEEeccccccchhhhccCCC--eEEEEeccCCCCchhHHHH----hhcccccc--cccCCCCCCCCCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLP--VWVMNIVPISMKNTLSAIY----NRGILGAF--HDWCEPFSTYPRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~--v~vmnv~p~~~~~~l~~~~----~RGlig~~--~~~~~~f~typrtyDl~H~~~~~s 540 (617)
..|||+|||.|.++.++.... |+-+-+-| ..+..+- ..|+-..+ .|.-+.++ ..+||+|.|+-++.
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~----~av~~A~~na~~n~~~~~~~~~d~~~~~~--~~~fD~V~ani~~~ 195 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDP----MVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAE 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCG----GGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHH
T ss_pred CEEEEcccchhHHHHHHHhcCCEEEEEECCh----HHHHHHHHHHHHcCCceeEEecccccccc--ccccchhhhccccc
Confidence 479999999999987776544 33332222 3333333 34542211 12222222 27899998765444
Q ss_pred ccccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCceEEEee
Q 039518 541 HYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWDVELHS 595 (617)
Q Consensus 541 ~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~ 595 (617)
. +..++=++-|+|+|||.+|+++- .+..+.|.+.++..-|+.....
T Consensus 196 ~---------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 196 L---------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp H---------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred c---------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEE
Confidence 2 34677789999999999999753 2334667777777778765543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=4.3e-05 Score=76.48 Aligned_cols=114 Identities=8% Similarity=0.068 Sum_probs=69.2
Q ss_pred HHHHHHHHhcc----CCCCCeeeEEeccccccchhhhccCCC-eEEEEeccCCCC-chhHHHHhhcc---cccccccCCC
Q 039518 452 DQVRHYWQLMN----VNETEIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMK-NTLSAIYNRGI---LGAFHDWCEP 522 (617)
Q Consensus 452 ~~v~~y~~~~~----~~~~~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~-~~l~~~~~RGl---ig~~~~~~~~ 522 (617)
.|.+.|.+.+. +..+ .+|||+|||.|.++..+.... --|..+-+...- .....+-+.|+ |-+.+.-.+.
T Consensus 18 ~r~~~y~~ai~~~~~~~~~--~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~ 95 (311)
T d2fyta1 18 IRTESYRDFIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEE 95 (311)
T ss_dssp HHHHHHHHHHHHCGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHHHHhccccCCc--CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHH
Confidence 34455655442 3334 469999999999877665443 234434332211 23345566665 3334433344
Q ss_pred CCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 523 FSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 523 f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
+..-+..||+|=+..+++.. ...-.++.++-.++|+|+|||.+|-
T Consensus 96 l~~~~~~~D~Ivse~~~~~~---~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 96 VHLPVEKVDVIISEWMGYFL---LFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCCSCSCEEEEEECCCBTTB---TTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hcCccccceEEEEeeeeeec---ccccccHHHHHHHHhcCCCCcEEec
Confidence 44434899999876666543 3333456788889999999999984
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.41 E-value=0.00029 Score=65.28 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=68.0
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC---cEEEEecC---CCCCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG---AMISALST---KQLPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~---~~~~~~d~---~~Lpf~d~sFDlV~~ 298 (617)
+.+|||+-||||.++...+++|.. .++.+|.+...++..+++ +.. ..+...+. .........||+|++
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 346999999999999999999986 566789999998877765 322 23333332 222334557999986
Q ss_pred ccccccccc-chHHHHHHHHH--hccCCeEEEEEeC
Q 039518 299 SRCRVDWHA-NDGILLKEVDR--VLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~-d~~~~L~el~R--vLrPGG~Liis~p 331 (617)
-- ++.. .....+..+.. +|+++|.+++..+
T Consensus 122 DP---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 122 DP---PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CC---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ch---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 53 3332 24556666654 7999999999764
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00028 Score=67.04 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=70.9
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH----hCC-CcEEEEecCCCCCCCCCCeeEEEeccccc
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE----RGI-GAMISALSTKQLPYPSSSFEMVHCSRCRV 303 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e----rg~-~~~~~~~d~~~Lpf~d~sFDlV~~s~~l~ 303 (617)
+.++||+|+|.|.-|..|+-..+. ..++.+|....-+.+.++ -++ ++.+....++.+. .+.+||+|+|. ++
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~-~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sR-A~- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISR-AF- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECS-CS-
T ss_pred CCceeeeeccCCceeeehhhhccc-ceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhh-hh-
Confidence 357999999999888888765443 267778888877766554 255 5777777777765 35689999854 33
Q ss_pred ccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 304 DWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 304 h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.+...++.-+...+++||.+++--
T Consensus 142 ---~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 ---ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 257789999999999999999864
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.36 E-value=0.00014 Score=73.28 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=84.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCCCCCeeEEEe--
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYPSSSFEMVHC-- 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlV~~-- 298 (617)
..+|.+|||+.||.|.=+..+++.......+.+.|.++..++...++ |.. +.+...|...++..+..||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 45777899999999987766765422222567789998888766543 443 44444555555656778999986
Q ss_pred --cccc-c--------ccc-cc-------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEE
Q 039518 299 --SRCR-V--------DWH-AN-------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLI 359 (617)
Q Consensus 299 --s~~l-~--------h~~-~d-------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v 359 (617)
+... . .+. ++ ..++|..+.+.|||||+++.++-.......+ +.++.++++..++.+
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE-----~VV~~~L~~~~~~~~ 268 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENE-----FVIQWALDNFDVELL 268 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTH-----HHHHHHHHHSSEEEE
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHH-----HHHHHHHhcCCCEEe
Confidence 2110 0 011 01 1346899999999999999998765544333 336777777776655
Q ss_pred E
Q 039518 360 A 360 (617)
Q Consensus 360 ~ 360 (617)
.
T Consensus 269 ~ 269 (313)
T d1ixka_ 269 P 269 (313)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.35 E-value=8.5e-05 Score=74.62 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=68.1
Q ss_pred HHHHHHHhcc----CCCCCeeeEEeccccccchhhhccCCC-eEEEEeccCCCC-chhHHHHhhcccc---cccccCCCC
Q 039518 453 QVRHYWQLMN----VNETEIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMK-NTLSAIYNRGILG---AFHDWCEPF 523 (617)
Q Consensus 453 ~v~~y~~~~~----~~~~~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~-~~l~~~~~RGlig---~~~~~~~~f 523 (617)
|.+.|.+.|. +..| .+|||+|||.|.++-.+.+.. --|..|-+.... .....+-..|+.. +.+.--+.+
T Consensus 17 R~~~y~~ai~~~~~~~~~--~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~ 94 (316)
T d1oria_ 17 RTLTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 94 (316)
T ss_dssp HHHHHHHHHHTCHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHHHhccccCCc--CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc
Confidence 3445665542 3344 469999999998765554332 233334332222 3344555667643 333222334
Q ss_pred CCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 524 STYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 524 ~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
+.-+..+|+|-+.-+.... ...-.++.++-+++|+|+|||.+|-
T Consensus 95 ~~~~~~~D~ivs~~~~~~l---~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 95 ELPVEKVDIIISEWMGYCL---FYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCSSSCEEEEEECCCBBTB---TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccceeEEEeeeeeeeee---ccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 4434899999876555533 4455678899999999999999884
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.34 E-value=0.0002 Score=71.69 Aligned_cols=102 Identities=14% Similarity=0.007 Sum_probs=72.8
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~~ 298 (617)
.++||-||.|.|..+..+++... ...++.+|+++..++.|++.. ..+.+...|+.. +.-.++.||+|++
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 35699999999999999988642 236778899999999998752 346777777422 2223568999996
Q ss_pred cccccccc-----cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 299 SRCRVDWH-----ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 299 s~~l~h~~-----~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
- +..+.. -.-.++++.+.+.|+|||.++.-...
T Consensus 169 D-~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 169 D-STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp E-C----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred c-CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 4 222221 11367899999999999999987643
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.33 E-value=0.00044 Score=68.92 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=74.5
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh---------CCCcEEEEecCCC-C-CCCCCCeeEEE
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER---------GIGAMISALSTKQ-L-PYPSSSFEMVH 297 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er---------g~~~~~~~~d~~~-L-pf~d~sFDlV~ 297 (617)
.++||=||.|.|..+..+++... ...++.+|++++.++.|++. ..++.+...|... + ...+++||+|+
T Consensus 81 pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 81 PKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 45799999999999999988632 22677889999999999875 2456777777422 2 13456899999
Q ss_pred eccccccccc----chHHHHHHHHHhccCCeEEEEEeCC
Q 039518 298 CSRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 298 ~s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
.- +...... --.++++.+.+.|+|||.++.-...
T Consensus 160 ~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 160 VD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred Ec-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 63 2222211 1367899999999999999997653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.30 E-value=7.7e-05 Score=70.88 Aligned_cols=143 Identities=10% Similarity=0.158 Sum_probs=77.3
Q ss_pred ccCCCCCeeeEEeccccccchhhhccC---C-CeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCCCccchhhcc
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNS---L-PVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHAN 536 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~---~-~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~ 536 (617)
|++++|. .|||+|||.|++..+|.+ . .|+.+-+.|.--..-...+-.|+.+-..+-=.+....|+..+|.+-
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd-- 127 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD-- 127 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE--
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE--
Confidence 4467774 799999999998887753 2 2444433332111112233445644333322333344555555433
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEecC----------hHHHHHHHhh-hhcCCceEEEeeccccCCCcee
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE----------KSLITRIRDL-APKFLWDVELHSLENREKKMES 605 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~----------~~~~~~~~~~-~~~~~W~~~~~~~e~~~~~~~~ 605 (617)
-+|... -..-....+|.|+.|+|+|||++++.+. ..+...+.+. ..++... ...+. .|..++-
T Consensus 128 ~v~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~-E~i~L--~P~~~~H 201 (209)
T d1nt2a_ 128 LIYQDI---AQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIV-KHGSL--MPYHRDH 201 (209)
T ss_dssp EEEECC---CSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEE-EEEEC--TTTCTTE
T ss_pred EEEecc---cChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEE-EEEcc--CCCccCc
Confidence 333321 2233456789999999999999998632 2333333333 3333332 12222 3555677
Q ss_pred EEEEEecc
Q 039518 606 VLICRKKF 613 (617)
Q Consensus 606 ~l~~~k~~ 613 (617)
.+|.-+.|
T Consensus 202 ~~v~~~r~ 209 (209)
T d1nt2a_ 202 IFIHAYRF 209 (209)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 78776654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.25 E-value=1.2e-05 Score=79.60 Aligned_cols=100 Identities=16% Similarity=0.296 Sum_probs=62.3
Q ss_pred eeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccccccc-------ccC---CCCCCCCCccch
Q 039518 468 IRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGILGAFH-------DWC---EPFSTYPRTYDL 532 (617)
Q Consensus 468 ~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGlig~~~-------~~~---~~f~typrtyDl 532 (617)
.++|||+|||.|.++..|.+... +|+-.|-. +-|..+-+ ++.-..++ +|- ..++ +..+||+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~ 132 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDA 132 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEE
T ss_pred CCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceE
Confidence 46899999999999999988764 34445555 55555443 33322211 121 1122 2378999
Q ss_pred hhccc-cccccccC-CCCCChhhHHhhhhhcccCCceEEEe
Q 039518 533 LHANH-LFSHYKNR-GEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 533 ~H~~~-~~s~~~~~-~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
|-+.+ .|.+.... .+.=.+..+|-||-|+|+|||.+|+.
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 98643 55543100 01112446899999999999999995
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.25 E-value=5.3e-05 Score=73.21 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=81.9
Q ss_pred ccCCCCCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhhc-ccccccccCCCCCCCCCccchhhc
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNRG-ILGAFHDWCEPFSTYPRTYDLLHA 535 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~RG-lig~~~~~~~~f~typrtyDl~H~ 535 (617)
|++++| -+|||+|||.|.++..|.+. .|+-+.+.|.--..-...+-.|+ ++-+.+|...+...-+.++|.+-+
T Consensus 70 l~ikpG--~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 70 MPIKRD--SKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI 147 (230)
T ss_dssp CCCCTT--CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCC--CEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence 446666 47999999999998888642 36666665543222223334445 455666666554433356665433
Q ss_pred cccccccccCCCCCChhhHHhhhhhcccCCceEEEec----------ChHHHHHHHhhhhcCCceEEEe-eccccCCCce
Q 039518 536 NHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD----------EKSLITRIRDLAPKFLWDVELH-SLENREKKME 604 (617)
Q Consensus 536 ~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d----------~~~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~~ 604 (617)
...+. .....+.++.|+.|+|+|||+++|.+ ...+.+++++.++.--.+..-. +. .|..++
T Consensus 148 ~~~~~------~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL--~py~~~ 219 (230)
T d1g8sa_ 148 YEDVA------QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDI--EPFEKD 219 (230)
T ss_dssp EECCC------STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEEC--TTTSTT
T ss_pred ecccc------chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecC--CCCcCC
Confidence 23332 23456688999999999999999962 2244566666665555554332 32 344444
Q ss_pred eEEE
Q 039518 605 SVLI 608 (617)
Q Consensus 605 ~~l~ 608 (617)
-.+|
T Consensus 220 H~~v 223 (230)
T d1g8sa_ 220 HVMF 223 (230)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=97.24 E-value=5.1e-05 Score=69.00 Aligned_cols=109 Identities=9% Similarity=0.081 Sum_probs=70.0
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc----cc---ccccc-------
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG----IL---GAFHD------- 518 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG----li---g~~~~------- 518 (617)
+.+|+..|++.++ ..|||+|||.|-++..|.++..=|.-| |-. +.|..+-+|- .. +.+..
T Consensus 9 ~~~~~~~l~~~~~--~rvLd~GCG~G~~a~~la~~G~~V~gv---D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T d1pjza_ 9 LQQYWSSLNVVPG--ARVLVPLCGKSQDMSWLSGQGYHVVGA---ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 83 (201)
T ss_dssp HHHHHHHHCCCTT--CEEEETTTCCSHHHHHHHHHCCEEEEE---EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHHHHcCCCCC--CEEEEecCcCCHHHHHHHHcCCceEee---cccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence 5668888888877 489999999999999998777544433 323 5555555542 10 00000
Q ss_pred --cCCCCCC--CC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 519 --WCEPFST--YP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 519 --~~~~f~t--yp-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+..+.. ++ ..||+|.+..++... ..-....++-+|-|.|+|||.+++.
T Consensus 84 ~~~~d~~~l~~~~~~~~D~i~~~~~l~~l----~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 84 IWCGDFFALTARDIGHCAAFYDRAAMIAL----PADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp EEEECCSSSTHHHHHSEEEEEEESCGGGS----CHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred eecccccccccccccceeEEEEEeeeEec----chhhhHHHHHHHHHhcCCCcEEEEE
Confidence 0111222 23 678999887777642 2223346888899999999998875
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.24 E-value=4.2e-05 Score=74.70 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=57.2
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCCCCCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTKQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~~Lpf~d~sFDlV~~s~ 300 (617)
.++.+|||||||+|.++..|++.+. .+.++|+++.+++.++++. .++.+..+|+.+++++...++.|+++.
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~NL 101 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNI 101 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEEC
T ss_pred CCCCeEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEeeee
Confidence 4556799999999999999998865 5677899988888777663 357788889988888888888888664
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.20 E-value=0.00018 Score=69.19 Aligned_cols=140 Identities=12% Similarity=0.234 Sum_probs=80.4
Q ss_pred ccCCCCCeeeEEeccccccchhhhccC-----CCeEEEEeccCCCCchhHHHHhhc-ccccccccCCCC--CCCCCccch
Q 039518 461 MNVNETEIRNAMDMNAYCGGFAVALNS-----LPVWVMNIVPISMKNTLSAIYNRG-ILGAFHDWCEPF--STYPRTYDL 532 (617)
Q Consensus 461 ~~~~~~~~Rn~mDm~~~~g~faa~l~~-----~~v~vmnv~p~~~~~~l~~~~~RG-lig~~~~~~~~f--~typrtyDl 532 (617)
|++++| -+|||+|||.|+++.+|.+ -.|+.+-+.|.-.......+-.|+ +..+..|-..+- +-..-.+|.
T Consensus 69 l~i~pG--~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 69 FPIKPG--KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCCTT--CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred cccCCC--CEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEE
Confidence 346777 4799999999999999864 235665555443333334444556 344444433221 112245666
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe----------cChHHHHHHHhhhhcCCceEEE-eeccccCC
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR----------DEKSLITRIRDLAPKFLWDVEL-HSLENREK 601 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~----------d~~~~~~~~~~~~~~~~W~~~~-~~~e~~~~ 601 (617)
|+.+-... =....++-++.|+|+|||+++|. +...+..+++++.+. .++..- .+.++..
T Consensus 147 i~~d~~~~--------~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~- 216 (227)
T d1g8aa_ 147 IFEDVAQP--------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYE- 216 (227)
T ss_dssp EEECCCST--------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTS-
T ss_pred EEEEcccc--------chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCC-
Confidence 65321111 12346899999999999999985 224556667766654 455432 2333221
Q ss_pred CceeEEEEEec
Q 039518 602 KMESVLICRKK 612 (617)
Q Consensus 602 ~~~~~l~~~k~ 612 (617)
..--++|++|+
T Consensus 217 ~~H~~vv~rK~ 227 (227)
T d1g8aa_ 217 KDHALFVVRKT 227 (227)
T ss_dssp SSEEEEEEECC
T ss_pred CceEEEEEEeC
Confidence 12356777774
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=0.00059 Score=67.40 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=73.3
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~~ 298 (617)
.++||-||.|.|..+..+++... ...++.+|++++.++.|++.. .++.+...|... +.-.+++||+|+.
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred cceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 45799999999999999988632 226777899999999998752 346777777522 2223578999996
Q ss_pred cccccccc----cchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWH----ANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~----~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-. ..+.. -.-.++++.+.+.|+|||.++.-..
T Consensus 155 D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 155 DS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp SC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred cC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 42 22221 1246789999999999999998654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=97.17 E-value=0.00034 Score=66.12 Aligned_cols=118 Identities=8% Similarity=0.060 Sum_probs=69.0
Q ss_pred eeEEeccccccchhhhccC--CCeEEEEeccCCCC--chhHHHHhhcccccccccCCC--C-CCC-CCccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMK--NTLSAIYNRGILGAFHDWCEP--F-STY-PRTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~--~~l~~~~~RGlig~~~~~~~~--f-~ty-prtyDl~H~~~~~s 540 (617)
..|||+|||.|.|+..|.. .+.-+..|=....- .-.+.+-++||--+..-...+ + ..+ +.++|.++.....-
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P 110 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 110 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence 4699999999999998843 34433333322221 233445666762221111111 1 113 38899877544433
Q ss_pred cccc-CCCCCCh-hhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhc
Q 039518 541 HYKN-RGEVCSL-EDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPK 586 (617)
Q Consensus 541 ~~~~-~~~~c~~-~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~ 586 (617)
..+. ...|..+ ..+|-||-|+|+|||.+.|+ |..+..+.+.+....
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~ 159 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE 159 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHH
Confidence 2211 1223333 47899999999999999885 777777777666553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00031 Score=69.87 Aligned_cols=101 Identities=11% Similarity=0.050 Sum_probs=72.1
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCC-CCCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQ-LPYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlV~~ 298 (617)
.++||-||.|.|..+..+++... ...++.+|++++.++.|++.. .++.+...|+.. +.-..++||+|++
T Consensus 79 pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred cCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 45799999999999999987632 237778899999999998752 457777777422 2223568999996
Q ss_pred ccccccccc----chHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~p 331 (617)
- ....... .-.++++.+.+.|+|||.+++-..
T Consensus 158 D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 158 D-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp E-CC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 4 2222211 123579999999999999998754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.00022 Score=71.86 Aligned_cols=98 Identities=10% Similarity=0.061 Sum_probs=60.5
Q ss_pred eeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHHHhhccccc---ccccCCCCCCCCCccchhhccccccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAIYNRGILGA---FHDWCEPFSTYPRTYDLLHANHLFSHYK 543 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~~~RGlig~---~~~~~~~f~typrtyDl~H~~~~~s~~~ 543 (617)
.+|||+|||.|.++..+..... -|.-+-....- -....+-+.|+... ++.-.+.++.-+..||+|-+.-++...
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~- 118 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL- 118 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB-
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceee-
Confidence 4799999999988766654331 33333222111 23345566776432 332223333223799999876666533
Q ss_pred cCCCCCChhhHHhhhhhcccCCceEE
Q 039518 544 NRGEVCSLEDIMLEMDLIIRPQGFII 569 (617)
Q Consensus 544 ~~~~~c~~~~~l~e~dRilRP~G~~i 569 (617)
...-.++.++.+++|+|+|||.+|
T Consensus 119 --~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 119 --LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp --STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --ccchhHHHHHHHHHhccCCCeEEE
Confidence 344456789999999999999987
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00013 Score=71.20 Aligned_cols=127 Identities=14% Similarity=0.145 Sum_probs=72.2
Q ss_pred cccccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh--ccccc--
Q 039518 441 EEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR--GILGA-- 515 (617)
Q Consensus 441 ~~f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R--Glig~-- 515 (617)
+.|..|.......+....+.++-+..+=+.|||+|||.|.+...+..+.+ .+|+-.|-. +.++.+-.+ .-.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d 105 (263)
T d2g72a1 28 GDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFN 105 (263)
T ss_dssp TCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCC
T ss_pred ccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCccccc
Confidence 34444544333333333333332333346899999999988765554433 244555555 555544321 00111
Q ss_pred ---------------------------------ccccC--CCC---CCCCCccchhhccccccccccCCCCCChhhHHhh
Q 039518 516 ---------------------------------FHDWC--EPF---STYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLE 557 (617)
Q Consensus 516 ---------------------------------~~~~~--~~f---~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e 557 (617)
.+|-. .++ +..+..||+|-+..+++.. ..++..+...|-+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i--~~~~~~~~~~l~~ 183 (263)
T d2g72a1 106 WSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV--SPDLASFQRALDH 183 (263)
T ss_dssp CHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH--CSSHHHHHHHHHH
T ss_pred chhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHH--ccCHHHHHHHHHH
Confidence 11111 111 2234689999887777654 1344567789999
Q ss_pred hhhcccCCceEEEe
Q 039518 558 MDLIIRPQGFIIIR 571 (617)
Q Consensus 558 ~dRilRP~G~~i~~ 571 (617)
+-|+|||||++|+.
T Consensus 184 ~~~~LkPGG~li~~ 197 (263)
T d2g72a1 184 ITTLLRPGGHLLLI 197 (263)
T ss_dssp HHTTEEEEEEEEEE
T ss_pred HHHHcCCCCEEEEe
Confidence 99999999999996
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.11 E-value=0.00038 Score=70.05 Aligned_cols=101 Identities=11% Similarity=0.003 Sum_probs=70.2
Q ss_pred CCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---------CCcEEEEecCCCC-CCCCCCeeEEEe
Q 039518 229 VFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---------IGAMISALSTKQL-PYPSSSFEMVHC 298 (617)
Q Consensus 229 g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---------~~~~~~~~d~~~L-pf~d~sFDlV~~ 298 (617)
.++||-||.|.|..+..+++... +..++.+|+++..++.|++.. .++.+...|.... .-..++||+|++
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 35699999999999999988642 237888999999999999853 2356666664221 123568999996
Q ss_pred ccccccccc----chHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHA----NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~----d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-. ...... .-.++++.+.+.|+|||.++.-..
T Consensus 186 D~-~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 186 DS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp CC-C-------------HHHHHHHHEEEEEEEEEECC
T ss_pred cC-CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 42 222111 124679999999999999999764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00018 Score=68.46 Aligned_cols=127 Identities=6% Similarity=-0.081 Sum_probs=76.5
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc-ccc----------------------
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG-ILG---------------------- 514 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG-lig---------------------- 514 (617)
+.+++..+ ..|||.|||.|-.+-+|.++.-=|+.| |.. .-+..+.++- ..+
T Consensus 39 ~~l~~~~~--~rvLd~GCG~G~~a~~LA~~G~~V~gv---D~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 113 (229)
T d2bzga1 39 TFLKGKSG--LRVFFPLCGKAVEMKWFADRGHSVVGV---EISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS 113 (229)
T ss_dssp HHHTTCCS--CEEEETTCTTCTHHHHHHHTTCEEEEE---CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred HhcCCCCC--CEEEEeCCCCcHHHHHHHhCCCcEEEE---eCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence 43445555 469999999999999998887644444 444 4443333321 110
Q ss_pred -cccccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec----Ch--------HHHHHHH
Q 039518 515 -AFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD----EK--------SLITRIR 581 (617)
Q Consensus 515 -~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d----~~--------~~~~~~~ 581 (617)
...|.-+--+....+||+|...++|-+. ..=..+.++-+|-|+|||||++++.. .. -.-++++
T Consensus 114 ~~~~d~~~l~~~~~~~fd~i~~~~~l~~~----~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~ 189 (229)
T d2bzga1 114 LYCCSIFDLPRTNIGKFDMIWDRGALVAI----NPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIE 189 (229)
T ss_dssp EEESCGGGGGGSCCCCEEEEEESSSTTTS----CGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHH
T ss_pred EEEcchhhccccccCceeEEEEEEEEEec----cchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHH
Confidence 0011111113345789999987777643 22234689999999999999877741 10 1235567
Q ss_pred hhhhcCCceEEEee
Q 039518 582 DLAPKFLWDVELHS 595 (617)
Q Consensus 582 ~~~~~~~W~~~~~~ 595 (617)
++... .|++...+
T Consensus 190 ~lf~~-~~~i~~le 202 (229)
T d2bzga1 190 RLFGK-ICNIRCLE 202 (229)
T ss_dssp HHHTT-TEEEEEEE
T ss_pred HHhcC-CCEEEEEE
Confidence 77655 47765543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.0056 Score=61.55 Aligned_cols=142 Identities=14% Similarity=0.165 Sum_probs=87.0
Q ss_pred CCcccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CC
Q 039518 199 GTHFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GI 274 (617)
Q Consensus 199 gt~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~ 274 (617)
...|-+....-.+.+.+.+... +...++.+|||+-||+|.|+..|++... .+.++|+++.+++.|+++ ++
T Consensus 186 p~sFfQ~N~~~~e~l~~~v~~~---~~~~~~~~vlDLycG~G~fsl~La~~~~---~V~gvE~~~~ai~~A~~na~~n~i 259 (358)
T d1uwva2 186 PRDFIQVNAGVNQKMVARALEW---LDVQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGL 259 (358)
T ss_dssp SSSCCCSBHHHHHHHHHHHHHH---HTCCTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CchhhccchhhhhHHHHHHHHh---hccCCCceEEEecccccccchhcccccc---EEEeccCcHHHHHHHHHhHHhccc
Confidence 3456555544444333333211 1224456799999999999999998765 567779999999888765 44
Q ss_pred -CcEEEEecCCCC-C---CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHH-HH
Q 039518 275 -GAMISALSTKQL-P---YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDK-LV 348 (617)
Q Consensus 275 -~~~~~~~d~~~L-p---f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~-le 348 (617)
++.+..++.+.. + .....||+|+.---.-. ....+..+.+. +|.-.+++|..+ ..+.+ +.
T Consensus 260 ~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G----~~~~~~~l~~~-~~~~ivYVSCnp---------~TlaRDl~ 325 (358)
T d1uwva2 260 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIKL-EPIRIVYVSCNP---------ATLARDSE 325 (358)
T ss_dssp CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHHH-CCSEEEEEESCH---------HHHHHHHH
T ss_pred ccceeeecchhhhhhhhhhhhccCceEEeCCCCcc----HHHHHHHHHHc-CCCEEEEEeCCH---------HHHHHHHH
Confidence 467777766442 2 23467999986422211 23466666654 788888888632 11322 43
Q ss_pred HHHHHcCceEEEE
Q 039518 349 NLTTAMCWKLIAR 361 (617)
Q Consensus 349 ~La~~~gw~~v~~ 361 (617)
.| .+.||++...
T Consensus 326 ~l-~~~gy~l~~i 337 (358)
T d1uwva2 326 AL-LKAGYTIARL 337 (358)
T ss_dssp HH-HHTTCEEEEE
T ss_pred HH-HHCCCeEeEE
Confidence 33 3568887653
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00048 Score=68.29 Aligned_cols=128 Identities=12% Similarity=0.151 Sum_probs=80.5
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCCcEEEEecCCCCC--CCCCCeeEEEe-
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIGAMISALSTKQLP--YPSSSFEMVHC- 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~~~~~~~d~~~Lp--f~d~sFDlV~~- 298 (617)
..++.+|||+.+|.|.=+..|++.... ..+.+.|+++..++..+++ |.++.....+....+ ...+.||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred ccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence 356778999999999888888765433 2577788888777655543 666555544332221 24567999985
Q ss_pred ---cccc-c--------cccc-c-------hHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHH-cCce
Q 039518 299 ---SRCR-V--------DWHA-N-------DGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTA-MCWK 357 (617)
Q Consensus 299 ---s~~l-~--------h~~~-d-------~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~-~gw~ 357 (617)
|... + .+.+ + ...+|..+.+.|||||+++.++-.......+ +.++.++++ ..|+
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE-----~vv~~~l~~~~~~~ 253 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENS-----LQIKAFLQRTADAE 253 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTH-----HHHHHHHHHCTTCE
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCH-----HHHHHHHHhCCCcE
Confidence 2111 0 1110 1 1347899999999999999998755433222 336666665 3454
Q ss_pred EE
Q 039518 358 LI 359 (617)
Q Consensus 358 ~v 359 (617)
++
T Consensus 254 ~~ 255 (284)
T d1sqga2 254 LC 255 (284)
T ss_dssp EC
T ss_pred Ee
Confidence 43
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.00012 Score=69.62 Aligned_cols=103 Identities=11% Similarity=0.124 Sum_probs=60.5
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhcc---CCC--eEEEEeccCCCCchhHHHHhh-cccccccccCCCCCCCC
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALN---SLP--VWVMNIVPISMKNTLSAIYNR-GILGAFHDWCEPFSTYP 527 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~---~~~--v~vmnv~p~~~~~~l~~~~~R-Glig~~~~~~~~f~typ 527 (617)
+......+++++|. +|||+|||.|.+++.|. ... |+...+-|.-. ....-.+++ |+-.+..........+|
T Consensus 64 ~a~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~-~~a~~~~~~~~~~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 64 MALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVERLGIENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred hHHHHHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhH-HHhhhhHhhhcccccccccCchHHccc
Confidence 45566777788885 89999999999988774 333 44443322211 111122222 33222222233344444
Q ss_pred --CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 528 --RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 528 --rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
.+||.|++...+... .-++=|.|+|||.+|+-
T Consensus 141 ~~~~fD~I~~~~~~~~~------------p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEV------------PETWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGCCEEEEEECSBBSCC------------CHHHHHHEEEEEEEEEE
T ss_pred cccchhhhhhhccHHHh------------HHHHHHhcCCCcEEEEE
Confidence 689999987766532 22334679999999883
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.00 E-value=0.00029 Score=66.58 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=73.8
Q ss_pred eeEEeccccccchhhhccC--CCeEEEEeccCCCC--chhHHHHhhcc--cccc-cccCCCCCCCC-Cccchhhcccccc
Q 039518 469 RNAMDMNAYCGGFAVALNS--LPVWVMNIVPISMK--NTLSAIYNRGI--LGAF-HDWCEPFSTYP-RTYDLLHANHLFS 540 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~--~~v~vmnv~p~~~~--~~l~~~~~RGl--ig~~-~~~~~~f~typ-rtyDl~H~~~~~s 540 (617)
..|||+|||.|.|...|.. .+.-++-+=....- ..+.-+-+.|| |-++ .|-.+-..-+| .++|.||...---
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP 112 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP 112 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence 5799999999999988843 34444444333222 33444566776 2222 22222222234 8899988432211
Q ss_pred ccc-cCCCCCCh-hhHHhhhhhcccCCceEEE-ecChHHHHHHHhhhhcCCceEEE
Q 039518 541 HYK-NRGEVCSL-EDIMLEMDLIIRPQGFIII-RDEKSLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 541 ~~~-~~~~~c~~-~~~l~e~dRilRP~G~~i~-~d~~~~~~~~~~~~~~~~W~~~~ 593 (617)
-.+ ....|-.+ ..+|-++-|+|+|||.+++ +|..+..+.+.+......|....
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccc
Confidence 110 01122233 4788899999999999988 57777777776666666665443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.97 E-value=0.0014 Score=60.66 Aligned_cols=124 Identities=15% Similarity=0.050 Sum_probs=84.4
Q ss_pred cCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCC-CcEEEEecCCCCC-----CCCCCeeEEEec
Q 039518 226 SAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGI-GAMISALSTKQLP-----YPSSSFEMVHCS 299 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~-~~~~~~~d~~~Lp-----f~d~sFDlV~~s 299 (617)
+.+|+.++|..+|.|..+..+++.+. .+.++|.++.+++.|+++.. .+.+.......+. +..+.+|.|+.-
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~~---~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~D 92 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILAD 92 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcccC---cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEE
Confidence 35667799999999999999999865 56788999999999987633 3556665544432 334679999864
Q ss_pred ccccccc--------cchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWH--------ANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~--------~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
..+-.+. ......|.....+|+|||.+++..- +...-..+.+..++.+++.+.
T Consensus 93 LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f--------hs~Ed~ivk~~~~e~~~k~i~ 153 (182)
T d1wg8a2 93 LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF--------HSLEDRVVKRFLRESGLKVLT 153 (182)
T ss_dssp CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC--------SHHHHHHHHHHHHHHCSEESC
T ss_pred ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec--------ccchhHHHHHHHhhccceecc
Confidence 3221111 1124478889999999999998762 111112366777777776655
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.93 E-value=0.0036 Score=60.36 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=79.6
Q ss_pred CCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHH----hCCC-cEEEEecCCCCCC---CCCCeeEEEec
Q 039518 228 GVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALE----RGIG-AMISALSTKQLPY---PSSSFEMVHCS 299 (617)
Q Consensus 228 ~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~e----rg~~-~~~~~~d~~~Lpf---~d~sFDlV~~s 299 (617)
.+.+++|||+|.|.-+..|+-.... ..++-+|.+..-+.+.+. -++. +.+....++.+.. ..++||+|+|-
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~-~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCC-ccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 4567999999999888877653322 256777887776665433 3654 4555555554432 23579999964
Q ss_pred ccccccccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
++ .....++.-....+++||.+++--. +......+...+.....|++...
T Consensus 149 -Av----a~l~~ll~~~~~~l~~~g~~i~~KG------~~~~~El~~a~~~~~~~~~~~~~ 198 (239)
T d1xdza_ 149 -AV----ARLSVLSELCLPLVKKNGLFVALKA------ASAEEELNAGKKAITTLGGELEN 198 (239)
T ss_dssp -CC----SCHHHHHHHHGGGEEEEEEEEEEEC------C-CHHHHHHHHHHHHHTTEEEEE
T ss_pred -hh----hCHHHHHHHHhhhcccCCEEEEECC------CChHHHHHHHHHHHHHcCCEEEE
Confidence 22 2677899999999999999988542 12222234455566777887654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00052 Score=63.60 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlV~~ 298 (617)
.++.+|||+||+.|.|+.++.++......+.++|+.+. +....+.+..++..... ...+.||+|+|
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS 94 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------cccCCceEeecccccchhhhhhhhhccCcceeEEEe
Confidence 56778999999999999998875211113334444321 11223556666653321 23467999997
Q ss_pred cccccccccc----h-------HHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHAN----D-------GILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d----~-------~~~L~el~RvLrPGG~Liis~ 330 (617)
-.+ .....+ . ...+.-+.++|++||.|++=.
T Consensus 95 D~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 95 DMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp CCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 532 222211 1 235777889999999999965
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.61 E-value=0.0022 Score=62.14 Aligned_cols=126 Identities=15% Similarity=0.130 Sum_probs=72.8
Q ss_pred ccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHH---HHHHhCCCc-EEEE-ecCCCCCCCCCCeeEEEec
Q 039518 225 RSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQ---FALERGIGA-MISA-LSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq---~A~erg~~~-~~~~-~d~~~Lpf~d~sFDlV~~s 299 (617)
.+.++.+|+|+|||.|.|+.+++++. .+..+.+.++.-..-+ .....+-++ .+.. .++.. .+.+..|+|+|-
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcD 139 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCD 139 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEEC
T ss_pred CccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCEEEee
Confidence 34667789999999999999998874 2334444444211100 000011111 1111 12222 346789999986
Q ss_pred ccccccccch-------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 300 RCRVDWHAND-------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 300 ~~l~h~~~d~-------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.+ .+ ..++ -.+|.-+.+.|+|||-|++-+- .+..+...+.++.+-...|=.++.
T Consensus 140 m~-es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl-----~py~~~v~e~le~lq~~fgg~lVR 200 (257)
T d2p41a1 140 IG-ES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL-----NPYMSSVIEKMEALQRKHGGALVR 200 (257)
T ss_dssp CC-CC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES-----CCCSHHHHHHHHHHHHHHCCEEEC
T ss_pred CC-CC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC-----CCCChHHHHHHHHHHHHhCCeeEc
Confidence 42 22 1121 2467777899999999998653 234455566777777776654443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.54 E-value=0.0011 Score=64.51 Aligned_cols=95 Identities=8% Similarity=0.064 Sum_probs=61.3
Q ss_pred HhccCCCCCeeeEEeccccccchhhhccC---CCeEEEEeccCCCC-chhHHHHhh----cc----cccccccCCCCCCC
Q 039518 459 QLMNVNETEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTLSAIYNR----GI----LGAFHDWCEPFSTY 526 (617)
Q Consensus 459 ~~~~~~~~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l~~~~~R----Gl----ig~~~~~~~~f~ty 526 (617)
..++|.+| .+|||+|||.|+++.+|.. ..--|..+ |-. ..+..+-++ |. --...|.++.++
T Consensus 79 ~~l~i~pG--~rVLEiG~GsG~lt~~la~~v~~~g~V~~v---D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~-- 151 (250)
T d1yb2a1 79 MRCGLRPG--MDILEVGVGSGNMSSYILYALNGKGTLTVV---ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-- 151 (250)
T ss_dssp --CCCCTT--CEEEEECCTTSHHHHHHHHHHTTSSEEEEE---CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--
T ss_pred HHcCCCCc--CEEEEeeeeCcHHHHHHHHHhCCCcEEEEE---ECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--
Confidence 44558888 4799999999999888753 23233333 333 445555543 32 223456677655
Q ss_pred CCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe
Q 039518 527 PRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR 571 (617)
Q Consensus 527 prtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~ 571 (617)
...||.|..+ +-.. ..+|=++-|+|||||.+++.
T Consensus 152 ~~~fD~V~ld-~p~p----------~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 152 DQMYDAVIAD-IPDP----------WNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp SCCEEEEEEC-CSCG----------GGSHHHHHHTEEEEEEEEEE
T ss_pred cceeeeeeec-CCch----------HHHHHHHHHhcCCCceEEEE
Confidence 3889998742 2222 25789999999999999986
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.22 E-value=0.0037 Score=64.18 Aligned_cols=118 Identities=13% Similarity=0.029 Sum_probs=77.0
Q ss_pred cccCChhHHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhc-cCCCcEEEeeecCCcHHHHHHHHHh----CCC
Q 039518 201 HFKHGAPEYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLL-PLDIQTMSFAPKDGHENQIQFALER----GIG 275 (617)
Q Consensus 201 ~F~~~a~~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La-~~gv~~v~v~~iDis~~~lq~A~er----g~~ 275 (617)
.|.+.+...-..+.-++-. ...+.+|||..||+|..+...+ +.++. .|+.+|+++.+++.++++ +..
T Consensus 24 vFYNp~q~~NRDlsvl~~~------~~~~~~vLD~~sasG~rsiRya~E~~~~--~V~~nDis~~A~~~i~~N~~lN~~~ 95 (375)
T d2dula1 24 VFYNPRMALNRDIVVVLLN------ILNPKIVLDALSATGIRGIRFALETPAE--EVWLNDISEDAYELMKRNVMLNFDG 95 (375)
T ss_dssp CCCCGGGHHHHHHHHHHHH------HHCCSEEEESSCTTSHHHHHHHHHSSCS--EEEEEESCHHHHHHHHHHHHHHCCS
T ss_pred cccCHHHhhhhHHHHHHHH------HhCCCEEEEcCCCccHHHHHHHHhCCCC--EEEEecCCHHHHHHHHHHHHhcCcc
Confidence 5666665554443222211 1134569999999999999654 45543 688899999999999875 221
Q ss_pred ----------------cEEEEecCCCCC-CCCCCeeEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 276 ----------------AMISALSTKQLP-YPSSSFEMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 276 ----------------~~~~~~d~~~Lp-f~d~sFDlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+.+...|+..+. -....||+|.. -++. .+..+|..+.+.++.||.|.++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDi----DPfG-s~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 96 ELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDL----DPFG-SPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp CCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEE----CCSS-CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccccccccccccceeEeehhhhhhhhHhhcCcCCcccC----CCCC-CcHHHHHHHHHHhccCCEEEEEec
Confidence 122222321111 12356999984 3444 578899999999999999999864
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0061 Score=60.28 Aligned_cols=122 Identities=9% Similarity=0.003 Sum_probs=72.3
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHh----CCC-cEEEEecCCCCCCC---CCCeeEEEe
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALER----GIG-AMISALSTKQLPYP---SSSFEMVHC 298 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~er----g~~-~~~~~~d~~~Lpf~---d~sFDlV~~ 298 (617)
.+|.+|||+.+|.|.=+.+|++.-.....+.++|++...++..+++ |+. +.+...|...++.. .+.||.|++
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 5677899999999998888776411112567789998887766554 554 55666666555422 256999985
Q ss_pred c----cccc-------cc--ccc---h-------HHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHc
Q 039518 299 S----RCRV-------DW--HAN---D-------GILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAM 354 (617)
Q Consensus 299 s----~~l~-------h~--~~d---~-------~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~ 354 (617)
- .... .| ..+ . ..++..+. .|+|||.++.++-.......+ +-++.++++.
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe-----~vV~~~L~~~ 245 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENE-----DVVRDALQQN 245 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTH-----HHHHHHHTTS
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhH-----HHHHHHHHhC
Confidence 2 1100 01 000 0 12344444 479999999998654433222 3366666543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.15 E-value=0.0032 Score=57.62 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=71.5
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hccc---cccc-ccCCCCCCCC
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGIL---GAFH-DWCEPFSTYP 527 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGli---g~~~-~~~~~f~typ 527 (617)
-...+++.++. .|||+|||.|+++.+|...--=|. -.|-. +-+..+-+ .|+- =+++ |.-+.+.. .
T Consensus 25 il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~~V~---avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~-~ 98 (186)
T d1l3ia_ 25 IMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVY---AIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-I 98 (186)
T ss_dssp HHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEE---EEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-S
T ss_pred HHHhcCCCCCC--EEEEEECCeEcccccccccceEEE---EecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc-c
Confidence 34456677764 699999999999988865532232 23444 55555443 3442 1121 11111111 2
Q ss_pred CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-hHHHHHHHhhhhcCCceEE
Q 039518 528 RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-KSLITRIRDLAPKFLWDVE 592 (617)
Q Consensus 528 rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~ 592 (617)
..||+|=+.+. .=.+..++-++-+.|||||++++..- .+....+.+..+...|+..
T Consensus 99 ~~~D~v~~~~~---------~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 99 PDIDIAVVGGS---------GGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp CCEEEEEESCC---------TTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred CCcCEEEEeCc---------cccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 56776643221 12356889999999999999999753 3445556666666666543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.10 E-value=0.0063 Score=63.04 Aligned_cols=118 Identities=17% Similarity=0.158 Sum_probs=75.8
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccC----CCc--------EEEeeecCCcHHHHHHHHHh---
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPL----DIQ--------TMSFAPKDGHENQIQFALER--- 272 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~----gv~--------~v~v~~iDis~~~lq~A~er--- 272 (617)
...+.+.+++.. .++.+|||..||+|.|...+.++ +.. ...+.+.|+++.....|+-+
T Consensus 149 ~Iv~~mv~ll~~-------~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l 221 (425)
T d2okca1 149 PLIQAMVDCINP-------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 221 (425)
T ss_dssp HHHHHHHHHHCC-------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred hhhHhhheeccC-------cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence 445555555532 24456999999999998777543 110 11467889999998888754
Q ss_pred -CCC---cEEEEecCCCCCCCCCCeeEEEecccccccc----------------cchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 273 -GIG---AMISALSTKQLPYPSSSFEMVHCSRCRVDWH----------------ANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 273 -g~~---~~~~~~d~~~Lpf~d~sFDlV~~s~~l~h~~----------------~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
+.. ..+...|.... .+...||+|+++--...-. .....++..+.+.|++||.+++..|.
T Consensus 222 ~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 222 HGIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp TTCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cCCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 332 34455554332 3456899999974221100 01134899999999999999999884
Q ss_pred C
Q 039518 333 A 333 (617)
Q Consensus 333 ~ 333 (617)
.
T Consensus 301 ~ 301 (425)
T d2okca1 301 N 301 (425)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0072 Score=58.98 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=69.7
Q ss_pred HHHhccCCCCCeeeEEeccccccchhhhccC---CCeEEEEeccCCCCchhHHH---Hh-hccccc----ccccCCCCCC
Q 039518 457 YWQLMNVNETEIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMKNTLSAI---YN-RGILGA----FHDWCEPFST 525 (617)
Q Consensus 457 y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~~~l~~~---~~-RGlig~----~~~~~~~f~t 525 (617)
-...++|.+| -+|||+|||.|+++++|.. ..--|..+-... ..+..+ ++ -|+... ..|-++.|..
T Consensus 95 Ii~~l~i~pG--~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~--~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 95 IAMMLDVKEG--DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE--EFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHTTCCTT--CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH--HHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHhhCCCCC--CEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCH--HHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 3455668888 4799999999999888852 333333333222 333333 22 244322 2233344432
Q ss_pred CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhhcCCce
Q 039518 526 YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAPKFLWD 590 (617)
Q Consensus 526 yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~~~~W~ 590 (617)
..||.|. .+-.+...+|-++-|+|||||.+++- -..+.++++-+.++.-.|.
T Consensus 171 --~~~D~V~-----------~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 171 --KDVDALF-----------LDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp --CSEEEEE-----------ECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred --cceeeeE-----------ecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 6777664 22234567899999999999999864 4444455555555555564
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.89 E-value=0.0028 Score=60.94 Aligned_cols=96 Identities=11% Similarity=0.149 Sum_probs=57.6
Q ss_pred eEEEECCCCcHHHHHhcc----CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC----CCCCCeeEEEecccc
Q 039518 231 QVLDVGCGVASFSAFLLP----LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP----YPSSSFEMVHCSRCR 302 (617)
Q Consensus 231 rVLDIGCGtG~~a~~La~----~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp----f~d~sFDlV~~s~~l 302 (617)
+|||||++.|.-+..+++ .+..+ .+.++|+.......+.....++.+..+|..+.. +....||+|+.= ..
T Consensus 83 ~ILEIGv~~GgS~~~~a~~l~~~~~~~-kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID-~~ 160 (232)
T d2bm8a1 83 TIVELGVYNGGSLAWFRDLTKIMGIDC-QVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID-NA 160 (232)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCC-EEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE-SS
T ss_pred EEEEECCCCchHHHHHHHHHHhcCCCc-eEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEc-CC
Confidence 499999999976665543 23222 566667765443333333456788888754432 234568888742 23
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+ ......-+ +...+|++||++++.+
T Consensus 161 H~-~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 161 HA-NTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp CS-SHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred cc-hHHHHHHH-HHhcccCcCCEEEEEc
Confidence 33 21112223 4678999999999964
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0065 Score=58.94 Aligned_cols=71 Identities=7% Similarity=-0.014 Sum_probs=51.6
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC---CCcEEEEecCC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG---IGAMISALSTK 284 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg---~~~~~~~~d~~ 284 (617)
..++.|.+.+.. .++..|||||||+|.++..|++++. .+.++|+++.+++..+++. .++.+..+|+.
T Consensus 8 ~~~~~Iv~~~~~-------~~~d~vlEIGpG~G~LT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l 77 (252)
T d1qyra_ 8 FVIDSIVSAINP-------QKGQAMVEIGPGLAALTEPVGERLD---QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHHCC-------CTTCCEEEECCTTTTTHHHHHTTCS---CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGG
T ss_pred HHHHHHHHhcCC-------CCCCEEEEECCCchHHHHHHHccCC---ceEEEEeccchhHHHHHHhhhccchhHHhhhhh
Confidence 455556555532 3445699999999999999999875 4667799999988887753 34677777776
Q ss_pred CCCC
Q 039518 285 QLPY 288 (617)
Q Consensus 285 ~Lpf 288 (617)
.+++
T Consensus 78 ~~~~ 81 (252)
T d1qyra_ 78 TFNF 81 (252)
T ss_dssp GCCH
T ss_pred hhcc
Confidence 6543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.015 Score=57.10 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=51.5
Q ss_pred CCCCeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhC------CCcEEEEecCCCCCCCCCCeeEEEec
Q 039518 227 AGVFQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERG------IGAMISALSTKQLPYPSSSFEMVHCS 299 (617)
Q Consensus 227 ~~g~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg------~~~~~~~~d~~~Lpf~d~sFDlV~~s 299 (617)
.++..|||||+|.|.++..|++++. .+.++++++.+++..+++. .++.+..+|+...+++. ++.|+++
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~~~---~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~--~~~vV~N 93 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF--FDTCVAN 93 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC--CSEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHhcCC---cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh--hhhhhcc
Confidence 3456799999999999999999875 4667789999988887651 24677888876665543 5677765
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.07 E-value=0.027 Score=50.04 Aligned_cols=97 Identities=10% Similarity=0.020 Sum_probs=66.0
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC---------CCCCCe
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP---------YPSSSF 293 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp---------f~d~sF 293 (617)
.+.++.+||-+||| .|.++..+++. |. .+..+|.++..++.|++.|....+..-....-. ...+.+
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga---~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA---FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcc---cccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCC
Confidence 35678889999988 56666666654 54 566678999999999998875544322111100 012458
Q ss_pred eEEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 294 EMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
|+|+-.- .-...+..+.++|+|||.+++...
T Consensus 100 D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 100 NVTIDCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ceeeecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 9887431 234678889999999999999764
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.93 E-value=0.0096 Score=58.10 Aligned_cols=108 Identities=8% Similarity=0.143 Sum_probs=64.4
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccC---C--CeEEEEeccCCCC-chhHHHHh---h---cccccccccCC
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS---L--PVWVMNIVPISMK-NTLSAIYN---R---GILGAFHDWCE 521 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~---~--~v~vmnv~p~~~~-~~l~~~~~---R---Glig~~~~~~~ 521 (617)
++.....+++.+|. +|||.|||.|+++.+|.. . .|+.. |-. ..+..+-+ + +.....+..+.
T Consensus 85 ~s~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~~-----d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~ 157 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISY-----EQRADHAEHARRNVSGCYGQPPDNWRLVVS 157 (264)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE-----CSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred HHHHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEEe-----cCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence 34455666788884 799999999999988853 2 34554 333 44444433 1 12222222222
Q ss_pred CC--CCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHH
Q 039518 522 PF--STYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITR 579 (617)
Q Consensus 522 ~f--~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~ 579 (617)
.+ ..+| .+||.|..+ +-+.| .++-++-|+|||||.+++- -..+.+.+
T Consensus 158 d~~~~~~~~~~fDaV~ld-lp~P~----------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~ 208 (264)
T d1i9ga_ 158 DLADSELPDGSVDRAVLD-MLAPW----------EVLDAVSRLLVAGGVLMVYVATVTQLSR 208 (264)
T ss_dssp CGGGCCCCTTCEEEEEEE-SSCGG----------GGHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred ccccccccCCCcceEEEe-cCCHH----------HHHHHHHhccCCCCEEEEEeCccChHHH
Confidence 11 1234 889987632 33333 6788999999999998874 34433333
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.74 E-value=0.036 Score=53.61 Aligned_cols=135 Identities=11% Similarity=0.129 Sum_probs=76.5
Q ss_pred cccccchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCC-eEEEEeccCCCC-chhHHH----Hhhcccc
Q 039518 441 EEFTTDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLP-VWVMNIVPISMK-NTLSAI----YNRGILG 514 (617)
Q Consensus 441 ~~f~~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~-v~vmnv~p~~~~-~~l~~~----~~RGlig 514 (617)
-.|..+....+.++... +..| .+|+||+||+|+|+-.+...+ .-|..| |-. +.+..+ -.-|+-+
T Consensus 88 ~~f~~~~~~er~ri~~~-----~~~g--~~VlD~~aG~G~~~l~~a~~~~~~V~av---d~n~~a~~~~~~N~~~n~l~~ 157 (260)
T d2frna1 88 IMFSPANVKERVRMAKV-----AKPD--ELVVDMFAGIGHLSLPIAVYGKAKVIAI---EKDPYTFKFLVENIHLNKVED 157 (260)
T ss_dssp SCCCGGGHHHHHHHHHH-----CCTT--CEEEETTCTTTTTHHHHHHHTCCEEEEE---CCCHHHHHHHHHHHHHTTCTT
T ss_pred ccEecCCHHHHHHHHhh-----cCCc--cEEEECcceEcHHHHHHHHhCCcEEEEe---cCCHHHHHHHHHHHHHhCCCc
Confidence 34666666666665442 3455 579999999999987665433 233332 222 333332 2224433
Q ss_pred cccccCCCCCCCC--CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecC-------hHHHHHHHhhhh
Q 039518 515 AFHDWCEPFSTYP--RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDE-------KSLITRIRDLAP 585 (617)
Q Consensus 515 ~~~~~~~~f~typ--rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~-------~~~~~~~~~~~~ 585 (617)
...-.+.-...++ ..||.|..+-..+ -.+.|-+.=++|+|||++.+-+. .+..+.++++++
T Consensus 158 ~v~~~~~D~~~~~~~~~~D~Ii~~~p~~----------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~ 227 (260)
T d2frna1 158 RMSAYNMDNRDFPGENIADRILMGYVVR----------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITK 227 (260)
T ss_dssp TEEEECSCTTTCCCCSCEEEEEECCCSS----------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHH
T ss_pred eEEEEEcchHHhccCCCCCEEEECCCCc----------hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHH
Confidence 2222222222233 5688776443322 13456677789999999866421 234567788888
Q ss_pred cCCceEEEee
Q 039518 586 KFLWDVELHS 595 (617)
Q Consensus 586 ~~~W~~~~~~ 595 (617)
...+++....
T Consensus 228 ~~g~~v~~~~ 237 (260)
T d2frna1 228 EYGYDVEKLN 237 (260)
T ss_dssp HTTCEEEEEE
T ss_pred HcCCceEEEE
Confidence 8788776543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.0066 Score=54.51 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=62.9
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-CCCCCCeeEEEeccc
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-PYPSSSFEMVHCSRC 301 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-pf~d~sFDlV~~s~~ 301 (617)
.+.+|.+||-+|+| .|.++..+++. |.. +..+|.+++.++.|++.|....+...+.... ....+.||+|+..-.
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~---vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAE---TYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhcccc---ccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 45688899999998 66777777654 654 4456778888899999886543332221111 112357999875321
Q ss_pred ccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 302 RVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 302 l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
..+ ...+....++|+|||.+++.+
T Consensus 101 ~~~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 101 SLT-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CST-----TCCTTTGGGGEEEEEEEEECC
T ss_pred CCc-----cchHHHHHHHhhccceEEEec
Confidence 111 112456789999999999975
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.66 E-value=0.0068 Score=57.74 Aligned_cols=96 Identities=7% Similarity=0.144 Sum_probs=53.0
Q ss_pred HHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhh--cc--cccccccCCCCCCCC--C
Q 039518 456 HYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNR--GI--LGAFHDWCEPFSTYP--R 528 (617)
Q Consensus 456 ~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~R--Gl--ig~~~~~~~~f~typ--r 528 (617)
.....|.+..|. .|||+|||+|-++|.|...-=-|..+ +-. ..+..+-++ +. +-+.+ ...+..|| .
T Consensus 61 ~ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V~ai---E~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~ 133 (224)
T d1vbfa_ 61 FMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSV---EINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEK 133 (224)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEE---ESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGC
T ss_pred HHHHHhhhcccc--eEEEecCCCCHHHHHHHHHhcccccc---cccHHHHHHHHHHHhccccccccc--Cchhhcchhhh
Confidence 344556688875 79999999999988774432123333 322 232222222 11 11111 11222344 4
Q ss_pred ccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 529 TYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 529 tyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
.||.|+..+.... +.-++=+.|+|||.+|+
T Consensus 134 pfD~Iiv~~a~~~------------ip~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 134 PYDRVVVWATAPT------------LLCKPYEQLKEGGIMIL 163 (224)
T ss_dssp CEEEEEESSBBSS------------CCHHHHHTEEEEEEEEE
T ss_pred hHHHHHhhcchhh------------hhHHHHHhcCCCCEEEE
Confidence 6999997665442 22233356999999987
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.009 Score=63.63 Aligned_cols=118 Identities=15% Similarity=0.057 Sum_probs=71.4
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccC----CCc-------------EEEeeecCCcHHHHHHHH
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPL----DIQ-------------TMSFAPKDGHENQIQFAL 270 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~----gv~-------------~v~v~~iDis~~~lq~A~ 270 (617)
...+.+.+++.. .++.+|+|-.||+|.|.....+. ... ...+.+.|+++.+...|+
T Consensus 151 ~Iv~~mv~ll~~-------~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~ 223 (524)
T d2ar0a1 151 PLIKTIIHLLKP-------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 223 (524)
T ss_dssp HHHHHHHHHHCC-------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred chhHhhhhcccC-------ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence 455566666532 23456999999999998665432 110 114677899998888887
Q ss_pred Hh----CCCcE------EEEecCCCCC-CCCCCeeEEEecccccc-c-----------ccc-hHHHHHHHHHhccCCeEE
Q 039518 271 ER----GIGAM------ISALSTKQLP-YPSSSFEMVHCSRCRVD-W-----------HAN-DGILLKEVDRVLRPNGYF 326 (617)
Q Consensus 271 er----g~~~~------~~~~d~~~Lp-f~d~sFDlV~~s~~l~h-~-----------~~d-~~~~L~el~RvLrPGG~L 326 (617)
-+ +.... +...+....+ .....||+|+++--+-. + ..+ .-.++..+.+.|+|||++
T Consensus 224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ 303 (524)
T d2ar0a1 224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 303 (524)
T ss_dssp HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred HHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence 53 32211 2222211111 23457999998742210 0 001 134899999999999999
Q ss_pred EEEeCC
Q 039518 327 VYSAPP 332 (617)
Q Consensus 327 iis~p~ 332 (617)
.+..|.
T Consensus 304 aiIlP~ 309 (524)
T d2ar0a1 304 AVVVPD 309 (524)
T ss_dssp EEEEEH
T ss_pred EEEEeh
Confidence 999884
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.034 Score=55.62 Aligned_cols=121 Identities=9% Similarity=0.141 Sum_probs=63.9
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhccC---CC--eEEEEeccCCCCchhHHHHhh--------------cc--
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS---LP--VWVMNIVPISMKNTLSAIYNR--------------GI-- 512 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~---~~--v~vmnv~p~~~~~~l~~~~~R--------------Gl-- 512 (617)
++.-...++|.+|. .|||+|||.|+++.+|.. .. |+..-+-+ ..+..+-++ ++
T Consensus 87 ~~~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~----~~~~~A~~n~~~~~~~~~~~~~~~~~~ 160 (324)
T d2b25a1 87 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK----DHHDLAKKNYKHWRDSWKLSHVEEWPD 160 (324)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH----HHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred HHHHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEecCCH----HHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 34445667798885 699999999999988853 33 44432211 333333221 11
Q ss_pred -cc-cccccCCCCCCCC-CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe-cChHHHHHHHhhhh--c
Q 039518 513 -LG-AFHDWCEPFSTYP-RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR-DEKSLITRIRDLAP--K 586 (617)
Q Consensus 513 -ig-~~~~~~~~f~typ-rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~-d~~~~~~~~~~~~~--~ 586 (617)
+- ...|.++....++ ..||.|..+ +-+.| .+|=|+-|+|||||.+++- -..+.+.++-+.++ .
T Consensus 161 nv~~~~~di~~~~~~~~~~~fD~V~LD-~p~P~----------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~ 229 (324)
T d2b25a1 161 NVDFIHKDISGATEDIKSLTFDAVALD-MLNPH----------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCE 229 (324)
T ss_dssp CEEEEESCTTCCC-------EEEEEEC-SSSTT----------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHT
T ss_pred ceeEEecchhhcccccCCCCcceEeec-CcCHH----------HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 11 1223444333333 678876521 11212 4788999999999998863 33433333333332 4
Q ss_pred CCceE
Q 039518 587 FLWDV 591 (617)
Q Consensus 587 ~~W~~ 591 (617)
+.|..
T Consensus 230 ~~f~~ 234 (324)
T d2b25a1 230 LALSC 234 (324)
T ss_dssp CCEEE
T ss_pred CCcee
Confidence 55743
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.31 E-value=0.061 Score=49.46 Aligned_cols=101 Identities=14% Similarity=0.053 Sum_probs=67.3
Q ss_pred ccCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCC--------CCCCee
Q 039518 225 RSAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPY--------PSSSFE 294 (617)
Q Consensus 225 r~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf--------~d~sFD 294 (617)
.+.+|.+||-+|||. |..+..+++. +.. .+..+|.++..++.|++.|....+ +...-++ ....+|
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g~g~D 96 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALLGEPEVD 96 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhccc--ceeeecccchhhHhhhhccccEEE---eCCCcCHHHHHHHHhCCCCcE
Confidence 457888999999997 6666666653 543 456678999999999999864322 2111111 234589
Q ss_pred EEEeccc------cccc--ccchHHHHHHHHHhccCCeEEEEEe
Q 039518 295 MVHCSRC------RVDW--HANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 295 lV~~s~~------l~h~--~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+++-.-. .++. .......+..+.++++|||.+++.+
T Consensus 97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 9884311 0110 1124578999999999999999975
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=94.30 E-value=0.0061 Score=60.92 Aligned_cols=118 Identities=16% Similarity=0.226 Sum_probs=66.8
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHH----hhccccc------ccccCCCCCCCCCccchhhccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIY----NRGILGA------FHDWCEPFSTYPRTYDLLHANH 537 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~----~RGlig~------~~~~~~~f~typrtyDl~H~~~ 537 (617)
+.|||++||+|||+.++....- .|+-.|.. .-|..+- .-|+-.+ .-+|.+.+..--.+||+|-++-
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~~---~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGFR---EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHEE---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHhcCC---cEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 7899999999999988864322 34444554 3443332 2333111 0112222222236899987653
Q ss_pred -cccccccCCCCCCh-------hhHHhhhhhcccCCceEEEe------cChHHHHHHHhhhhcCCceEEEe
Q 039518 538 -LFSHYKNRGEVCSL-------EDIMLEMDLIIRPQGFIIIR------DEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 538 -~~s~~~~~~~~c~~-------~~~l~e~dRilRP~G~~i~~------d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
.|+ .++-.+ ..++-..=++|+|||.+++. +..+..+.|.+-+..-..++++.
T Consensus 224 P~~~-----~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~ 289 (318)
T d1wxxa2 224 PAFA-----KGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289 (318)
T ss_dssp CCSC-----CSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred Cccc-----cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 233 122122 36788888999999999996 23344455555555555555444
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.25 E-value=0.026 Score=50.93 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=63.7
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC--------C-CCCCCe
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL--------P-YPSSSF 293 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L--------p-f~d~sF 293 (617)
++++|.+||-+|+| .|.++..+++. |.. .|..+|.++..++.|++.|....+...+ ... . .....|
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~~i~~~~~~~g~ 101 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSPNRLKLAEEIGADLTLNRRE-TSVEERRKAIMDITHGRGA 101 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHHHHTTTSCE
T ss_pred CCCCCCEEEEECCCccchhheecccccccc--cccccccccccccccccccceEEEeccc-cchHHHHHHHHHhhCCCCc
Confidence 45678899999987 36666666654 543 5666788999999999988643332211 110 0 123459
Q ss_pred eEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 294 EMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+|+-. .- -...++...++|+|||.+++.+
T Consensus 102 Dvvid~--vG-----~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 102 DFILEA--TG-----DSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEEEC--SS-----CTTHHHHHHHHEEEEEEEEECC
T ss_pred eEEeec--CC-----chhHHHHHHHHhcCCCEEEEEe
Confidence 999843 11 1246788899999999998865
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.19 E-value=0.029 Score=50.72 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=64.7
Q ss_pred ccCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------CCCCCeeEE
Q 039518 225 RSAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------YPSSSFEMV 296 (617)
Q Consensus 225 r~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------f~d~sFDlV 296 (617)
.+++|.+||=+|||. |.++..+++. +.. .+..+|.++..++.|++.|....+...+ +.+. .....||+|
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~--~Vi~~d~~~~r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~G~D~v 100 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAG--RIIGVGSRPICVEAAKFYGATDILNYKN-GHIEDQVMKLTNGKGVDRV 100 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCS--CEEEECCCHHHHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTSCEEEE
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhccccc--ccccccchhhhHHHHHhhCccccccccc-hhHHHHHHHHhhccCcceE
Confidence 346778899999986 7777777775 443 4566799999999999988643322211 1110 122459999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+-.- .-...+.+..++|||||.+++..
T Consensus 101 id~~-------g~~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 101 IMAG-------GGSETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EECS-------SCTTHHHHHHHHEEEEEEEEECC
T ss_pred EEcc-------CCHHHHHHHHHHHhcCCEEEEEe
Confidence 8431 11246788889999999999965
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.18 E-value=0.011 Score=61.28 Aligned_cols=110 Identities=10% Similarity=0.048 Sum_probs=58.6
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhhhcc---C-CCeEEEEeccCCCCchhHHHHhhc-----------c-cc-cc
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAVALN---S-LPVWVMNIVPISMKNTLSAIYNRG-----------I-LG-AF 516 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~---~-~~v~vmnv~p~~~~~~l~~~~~RG-----------l-ig-~~ 516 (617)
+++-.+.++|++|. ++||+|||.|.++-.+. . ..|+-.-+.| +.+.++-++- . .| +-
T Consensus 205 i~~Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~----~~i~~Ak~~~~e~~~~~~~~g~~~~~~~ 278 (406)
T d1u2za_ 205 LSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMD----DASDLTILQYEELKKRCKLYGMRLNNVE 278 (406)
T ss_dssp HHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCH----HHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred HHHHHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCH----HHHHHHHHHHHHHhhhhhhhccccccce
Confidence 55566767798986 59999999998875443 2 3465554443 3333333221 1 00 00
Q ss_pred cccCCCCCCCC-Cccchhhccccccc-cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 517 HDWCEPFSTYP-RTYDLLHANHLFSH-YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 517 ~~~~~~f~typ-rtyDl~H~~~~~s~-~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
.+....|-.-+ --.++-.|+-+|.. + ...=.+...|-||=|+|||||.+|..|
T Consensus 279 ~~~~~~f~~~~~~d~~~~~adVV~inn~---~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 279 FSLKKSFVDNNRVAELIPQCDVILVNNF---LFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCT---TCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred eeeeechhhccccccccccceEEEEecc---cCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 01111121101 11122233333331 1 111234578999999999999999865
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.03 Score=52.83 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=75.8
Q ss_pred CeeeEEeccccccchhhhccC---CCeEEEEeccCCCC-chh-HHHHhhcc---cccc-cccCCCCCC-----CCCccch
Q 039518 467 EIRNAMDMNAYCGGFAVALNS---LPVWVMNIVPISMK-NTL-SAIYNRGI---LGAF-HDWCEPFST-----YPRTYDL 532 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~---~~v~vmnv~p~~~~-~~l-~~~~~RGl---ig~~-~~~~~~f~t-----yprtyDl 532 (617)
+-++||++|+++|-=+.+|.. .+--+..+-..... ... +.+-+-|+ |-+. .|-.+..+. .+.+||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 368999999999976666632 23334444333322 222 22322343 1111 122222221 2578999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecCh---------------H-HHHHHHhhhhcCCceEEEeec
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEK---------------S-LITRIRDLAPKFLWDVELHSL 596 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~---------------~-~~~~~~~~~~~~~W~~~~~~~ 596 (617)
|..++--+.| ..++-++=+.|||||.+|+-|-. . +-+-.+.|.+.-+|+..+.-.
T Consensus 139 ifiD~dk~~y---------~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi 209 (219)
T d2avda1 139 AVVDADKENC---------SAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 209 (219)
T ss_dssp EEECSCSTTH---------HHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred EEEeCCHHHH---------HHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec
Confidence 9966544433 45666677999999999996331 1 222345567888999888742
Q ss_pred cccCCCceeEEEEEe
Q 039518 597 ENREKKMESVLICRK 611 (617)
Q Consensus 597 e~~~~~~~~~l~~~k 611 (617)
.+.++|++|
T Consensus 210 ------gdGl~ia~K 218 (219)
T d2avda1 210 ------GDGLTLAFK 218 (219)
T ss_dssp ------TTCEEEEEE
T ss_pred ------CCeeEEEEe
Confidence 356899988
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.041 Score=49.19 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=62.4
Q ss_pred ccCCCCeEEEECC--CCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCe
Q 039518 225 RSAGVFQVLDVGC--GVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSF 293 (617)
Q Consensus 225 r~~~g~rVLDIGC--GtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sF 293 (617)
++++|.+||-+|+ |.|..+..+++. |..+ ...+.+++..+.+++.|....+ +..+.. ...+.|
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~v---i~~~~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYGLKI---LGTAGTEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHHCTTCE
T ss_pred CCCCCCEEEEEeccccccccccccccccCccc---ccccccccccccccccCccccc---ccccccHHHHhhhhhccCCc
Confidence 4578889999996 466667666654 5543 3444577778899988865333 222211 134569
Q ss_pred eEEEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 294 EMVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 294 DlV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+|+... ....+....++|+|||.++..+
T Consensus 99 d~v~d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 99 DIIIEML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEEESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred eEEeecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 9998642 2346888899999999999864
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.43 E-value=0.0067 Score=57.19 Aligned_cols=117 Identities=16% Similarity=0.248 Sum_probs=65.2
Q ss_pred CeeeEEeccccccchhhhccC---CC--eEEEEeccCCCCchhHHHHhhcccc---c-ccccCCCCCC----C-CCccch
Q 039518 467 EIRNAMDMNAYCGGFAVALNS---LP--VWVMNIVPISMKNTLSAIYNRGILG---A-FHDWCEPFST----Y-PRTYDL 532 (617)
Q Consensus 467 ~~Rn~mDm~~~~g~faa~l~~---~~--v~vmnv~p~~~~~~l~~~~~RGlig---~-~~~~~~~f~t----y-prtyDl 532 (617)
+-++|+++|+|.|..+.+|.. .+ |+++-+-|......-..+-.-|+-. + ..|..+.++. + ..+||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 358999999999987776642 33 3443332221112222333446421 1 1222232332 2 267999
Q ss_pred hhccccccccccCCCCCChhhHHhhhhhcccCCceEEEec-----ChHHHHHHHhhhhcCCceEEE
Q 039518 533 LHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD-----EKSLITRIRDLAPKFLWDVEL 593 (617)
Q Consensus 533 ~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~~~~ 593 (617)
|..++-.+.| .....+.|.-|+|||||.+|+-| .++.++.|++ .=.|+...
T Consensus 136 ifiD~~~~~~-------~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~ 191 (214)
T d2cl5a1 136 VFLDHWKDRY-------LPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH 191 (214)
T ss_dssp EEECSCGGGH-------HHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred eeeccccccc-------ccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence 9876655533 12245777889999999877654 3566666664 34565544
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=93.24 E-value=0.025 Score=54.19 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=61.8
Q ss_pred CCCeeeEEeccccccchhhhccCC----CeEEEEeccCCCCchhHHHHhhc----ccccccccCCCCCCCCCccchhhcc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSL----PVWVMNIVPISMKNTLSAIYNRG----ILGAFHDWCEPFSTYPRTYDLLHAN 536 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~----~v~vmnv~p~~~~~~l~~~~~RG----lig~~~~~~~~f~typrtyDl~H~~ 536 (617)
...++.|+|+|||.|.++++|.+. .+.++..- ++|-+.+ +--+-||.=++ .| ..|++...
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp--------~vi~~~~~~~ri~~~~gd~~~~---~p-~~D~~~l~ 146 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP--------QVIENAPPLSGIEHVGGDMFAS---VP-QGDAMILK 146 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH--------HHHTTCCCCTTEEEEECCTTTC---CC-CEEEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch--------hhhhccCCCCCeEEecCCcccc---cc-cceEEEEe
Confidence 578999999999999999999632 34555432 1222222 22333554344 44 45999888
Q ss_pred ccccccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 537 HLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 537 ~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
+++-.|.. . ....||-.+=+.|+|||.++|-|
T Consensus 147 ~vLh~~~d--e--~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 147 AVCHNWSD--E--KCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp SSGGGSCH--H--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhCCH--H--HHHHHHHHHHHHcCCCcEEEEEE
Confidence 88887721 1 12368888899999999999975
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.015 Score=55.07 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=51.5
Q ss_pred HHHHhc--cCCCCCeeeEEeccccccchhhhcc---CC--CeEEEEeccCCCCchhHHHH-hhcc--c--ccccccC-CC
Q 039518 456 HYWQLM--NVNETEIRNAMDMNAYCGGFAVALN---SL--PVWVMNIVPISMKNTLSAIY-NRGI--L--GAFHDWC-EP 522 (617)
Q Consensus 456 ~y~~~~--~~~~~~~Rn~mDm~~~~g~faa~l~---~~--~v~vmnv~p~~~~~~l~~~~-~RGl--i--g~~~~~~-~~ 522 (617)
.-...| .+++| -+|||+|||.|-++|.|. .. .|+..-..+.-. ....-.+ ..|+ + +.....+ ..
T Consensus 65 ~~le~L~~~l~~g--~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~-~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 65 YALELLFDQLHEG--AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELV-DDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHTTTTSCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHhhccCCC--CeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHH-HHHHHhccccCcccccccceEEEEeec
Confidence 344444 25565 479999999998776653 33 344432221111 1111111 2222 1 1111111 11
Q ss_pred CCCCC--CccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 523 FSTYP--RTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 523 f~typ--rtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
+..+| ..||.|+....... +.-++=+.|+|||.+|+
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~------------ip~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPV------------VPQALIDQLKPGGRLIL 179 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSS------------CCHHHHHTEEEEEEEEE
T ss_pred ccccchhhhhhhhhhhcchhh------------cCHHHHhhcCCCcEEEE
Confidence 22233 68999997765552 23344578999999998
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.88 E-value=0.077 Score=47.83 Aligned_cols=98 Identities=8% Similarity=-0.028 Sum_probs=66.9
Q ss_pred ccCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------CCCCCeeEE
Q 039518 225 RSAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------YPSSSFEMV 296 (617)
Q Consensus 225 r~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------f~d~sFDlV 296 (617)
.+++|.+||=+|||. |.++..+++. +.. .+...|.++..++.|++.|....+.....+... ...+.+|+|
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~--~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~v 102 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGAS--RIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYS 102 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCCc--eeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEE
Confidence 457888999999987 7777777765 443 455668899999999998875443211111110 123568999
Q ss_pred EecccccccccchHHHHHHHHHhccCC-eEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPN-GYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPG-G~Liis~p 331 (617)
+-. . --...+.+..+.|++| |.+++...
T Consensus 103 ie~------~-G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 103 LDC------A-GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EES------S-CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEe------c-ccchHHHHHHHHhhcCCeEEEecCC
Confidence 732 1 2346799999999997 99999763
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.48 E-value=0.032 Score=52.58 Aligned_cols=102 Identities=14% Similarity=0.225 Sum_probs=60.8
Q ss_pred HHHHHhccCCCCCeeeEEeccccccchhhhcc---CCCeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCC--Cc
Q 039518 455 RHYWQLMNVNETEIRNAMDMNAYCGGFAVALN---SLPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYP--RT 529 (617)
Q Consensus 455 ~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~---~~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typ--rt 529 (617)
..-...|.+.++. +|||+|||+|-.+|-|. ...|.++-+.|.-....-..+.+.|+--+.--....+..+| ..
T Consensus 68 a~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 3445566688885 89999999999888764 43466654443222211122334454333322333444455 78
Q ss_pred cchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEE
Q 039518 530 YDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIII 570 (617)
Q Consensus 530 yDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~ 570 (617)
||.|+..+-... +..-|++ -|+|||.+|+
T Consensus 146 fD~Iiv~~a~~~---------ip~~l~~---qL~~gGrLv~ 174 (215)
T d1jg1a_ 146 YDVIIVTAGAPK---------IPEPLIE---QLKIGGKLII 174 (215)
T ss_dssp EEEEEECSBBSS---------CCHHHHH---TEEEEEEEEE
T ss_pred ceeEEeeccccc---------CCHHHHH---hcCCCCEEEE
Confidence 999996554442 2344555 4899999986
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.055 Score=53.79 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=21.6
Q ss_pred HHHHHHhccCCCCCeeeEEeccccccchhh
Q 039518 454 VRHYWQLMNVNETEIRNAMDMNAYCGGFAV 483 (617)
Q Consensus 454 v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa 483 (617)
+++-.+.++++.+. .|+|+|||.|.++-
T Consensus 140 ~~~~~~~~~l~~~~--~vlD~GcG~G~~~~ 167 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDD--LFVDLGSGVGQVVL 167 (328)
T ss_dssp HHHHHHHSCCCTTC--EEEEETCTTSHHHH
T ss_pred HHHHHHHcCCCCCC--EEEEcCCCCCHHHH
Confidence 45555667788886 59999999998763
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.07 E-value=0.22 Score=46.82 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=52.9
Q ss_pred CCCCCeeEEEeccccc----c------cccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChhhHHHHHHHHHHcCce
Q 039518 288 YPSSSFEMVHCSRCRV----D------WHANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPLIWDKLVNLTTAMCWK 357 (617)
Q Consensus 288 f~d~sFDlV~~s~~l~----h------~~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~~W~~le~La~~~gw~ 357 (617)
++++++|+|+++--.- . +.+.....+.++.|+|+|||.+++.....+............+..+....+|.
T Consensus 19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (279)
T d1eg2a_ 19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKML 98 (279)
T ss_dssp SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCCE
T ss_pred CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhhHHHHHHhccCce
Confidence 5689999999873211 1 11223567899999999999999976543322222222344567777888887
Q ss_pred EEEEeeeeEEEeeccc
Q 039518 358 LIARKIQTAIWIKEEN 373 (617)
Q Consensus 358 ~v~~~~~~~IwqKp~~ 373 (617)
.. +..+|.++..
T Consensus 99 ~~----~~i~~~k~~~ 110 (279)
T d1eg2a_ 99 LA----NLIIWNYPNG 110 (279)
T ss_dssp EE----EEEEEECSCC
T ss_pred ee----eeeeeccccc
Confidence 64 3567777754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.079 Score=47.07 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=64.3
Q ss_pred ccCCCCeEEEECCCCc-HHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC--------CCCCCee
Q 039518 225 RSAGVFQVLDVGCGVA-SFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP--------YPSSSFE 294 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG-~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp--------f~d~sFD 294 (617)
.+.++.+||=+|+|.. .++..+++. |.. .+..+|.++..++.|++.|....+... .+... .....+|
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~~rl~~a~~~Ga~~~~~~~-~~~~~~~~~~~~~~~g~g~D 99 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSATRLSKAKEIGADLVLQIS-KESPQEIARKVEGQLGCKPE 99 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCSEEEECS-SCCHHHHHHHHHHHHTSCCS
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCHHHHHHHHHhCCccccccc-ccccccccccccccCCCCce
Confidence 3567888999999754 444444443 543 466679999999999998865433321 11110 0124689
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+|+-.- .-...+....+++++||.+++...
T Consensus 100 vvid~~-------G~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 100 VTIECT-------GAEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp EEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEEecc-------CCchhHHHHHHHhcCCCEEEEEec
Confidence 988531 124578899999999999999764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=91.47 E-value=0.051 Score=52.99 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=87.1
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccC-C-CeEEEEeccCCCC-chhHHHH----hhcc--c-c
Q 039518 445 TDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNS-L-PVWVMNIVPISMK-NTLSAIY----NRGI--L-G 514 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~-~-~v~vmnv~p~~~~-~~l~~~~----~RGl--i-g 514 (617)
.+|+.+-+.+-.. +.....| |+|+|||.|.-|.+|.. . +.-| +-.|-. .-|.++- .-|+ + =
T Consensus 92 peTE~lv~~~l~~-----~~~~~~~-vlDlGtGSG~I~i~la~~~p~~~v---~avDis~~Al~~A~~Na~~~~~~~v~~ 162 (274)
T d2b3ta1 92 PDTECLVEQALAR-----LPEQPCR-ILDLGTGTGAIALALASERPDCEI---IAVDRMPDAVSLAQRNAQHLAIKNIHI 162 (274)
T ss_dssp TTHHHHHHHHHHH-----SCSSCCE-EEEETCTTSHHHHHHHHHCTTSEE---EEECSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred cchhhhhhhHhhh-----hcccccc-eeeeehhhhHHHHHHHhhCCccee---eeccchhHHHhHHHHHHHHhCccccee
Confidence 3566665544322 2333444 89999999999888843 2 3333 233433 3333321 2222 2 2
Q ss_pred cccccCCCCCCCCCccchhhcccccccc----------ccCCCCCC---------hhhHHhhhhhcccCCceEEEecChH
Q 039518 515 AFHDWCEPFSTYPRTYDLLHANHLFSHY----------KNRGEVCS---------LEDIMLEMDLIIRPQGFIIIRDEKS 575 (617)
Q Consensus 515 ~~~~~~~~f~typrtyDl~H~~~~~s~~----------~~~~~~c~---------~~~~l~e~dRilRP~G~~i~~d~~~ 575 (617)
+..||-++++. ..||+|=++-=+-.- +.+...-. +..++-+.-+.|+|||++++-=..+
T Consensus 163 ~~~d~~~~~~~--~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~ 240 (274)
T d2b3ta1 163 LQSDWFSALAG--QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ 240 (274)
T ss_dssp ECCSTTGGGTT--CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS
T ss_pred eecccccccCC--CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch
Confidence 44577666654 689998776332100 00011110 1258888999999999999953333
Q ss_pred HHHHHHhhhhcCCce-EEEeeccccCCCceeEEEEE
Q 039518 576 LITRIRDLAPKFLWD-VELHSLENREKKMESVLICR 610 (617)
Q Consensus 576 ~~~~~~~~~~~~~W~-~~~~~~e~~~~~~~~~l~~~ 610 (617)
..+.++++++...|. +.+... -.+.+++++++
T Consensus 241 q~~~v~~~l~~~gf~~i~~~kD---l~g~~R~v~~r 273 (274)
T d2b3ta1 241 QGEAVRQAFILAGYHDVETCRD---YGDNERVTLGR 273 (274)
T ss_dssp CHHHHHHHHHHTTCTTCCEEEC---TTSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEEC---CCCCceEEEEe
Confidence 356788888877785 433321 24568888875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.25 E-value=0.096 Score=46.29 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=63.2
Q ss_pred ccCCCCeEEEECCC--CcHHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------CCCCCeeE
Q 039518 225 RSAGVFQVLDVGCG--VASFSAFLLP-LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------YPSSSFEM 295 (617)
Q Consensus 225 r~~~g~rVLDIGCG--tG~~a~~La~-~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------f~d~sFDl 295 (617)
.+.++.+||=+|++ .|..+..+++ .+.. .+...|.++..++.+++.|....+. .+.++.. ...+.||+
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~--~V~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~~d~ 100 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESKGVDA 100 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccc--cccccccchhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhcccchh
Confidence 35678889999973 4555555544 3543 4566788899999999988653332 1111110 12356999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+... .-...+....+.|+|||.+++..
T Consensus 101 vid~~-------g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 101 VIDLN-------NSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp EEESC-------CCHHHHTTGGGGEEEEEEEEECC
T ss_pred hhccc-------ccchHHHhhhhhcccCCEEEEec
Confidence 98531 23456788899999999999875
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=91.04 E-value=0.32 Score=46.18 Aligned_cols=156 Identities=14% Similarity=0.148 Sum_probs=91.7
Q ss_pred cchhhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhh---hccCCCeEEEEeccCCCC--chhHH-HHhhcc--ccc
Q 039518 445 TDTSFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAV---ALNSLPVWVMNIVPISMK--NTLSA-IYNRGI--LGA 515 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa---~l~~~~v~vmnv~p~~~~--~~l~~-~~~RGl--ig~ 515 (617)
...+.|.+++-.=...+. +......+++|+|+| |||=+ |+...+. -+..+=.... +-|.. +-+=|| +=+
T Consensus 47 ~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSG-aGfPGi~laI~~p~~-~v~Lves~~KK~~FL~~v~~~L~L~n~~i 124 (239)
T d1xdza_ 47 EKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAG-AGFPSLPIKICFPHL-HVTIVDSLNKRITFLEKLSEALQLENTTF 124 (239)
T ss_dssp SHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSS-SCTTHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred CHHHHHHHhccchhhhhhhhcccCCCeEEeecCC-CchHHHHHHHhCCCc-cceeecchHHHHHHHHHHHHHhCCCCcEE
Confidence 345778777765444444 443456789999999 44533 3222232 2222322222 44443 444477 446
Q ss_pred ccccCCCCCC---CCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEe---cChHHHHHHHhhhhcCCc
Q 039518 516 FHDWCEPFST---YPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIR---DEKSLITRIRDLAPKFLW 589 (617)
Q Consensus 516 ~~~~~~~f~t---yprtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~---d~~~~~~~~~~~~~~~~W 589 (617)
+|+.-|.+.. +.-.||+|=|-.+ .++..++-=....|+|||.+++- +-.+++++.++..+.+.+
T Consensus 125 ~~~R~E~~~~~~~~~~~~D~v~sRAv----------a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~ 194 (239)
T d1xdza_ 125 CHDRAETFGQRKDVRESYDIVTARAV----------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGG 194 (239)
T ss_dssp EESCHHHHTTCTTTTTCEEEEEEECC----------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTE
T ss_pred EeehhhhccccccccccceEEEEhhh----------hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 7877776653 3457898864322 34556666678999999999995 556777777888888888
Q ss_pred eEEEeec-c-ccCCCceeEEEEEec
Q 039518 590 DVELHSL-E-NREKKMESVLICRKK 612 (617)
Q Consensus 590 ~~~~~~~-e-~~~~~~~~~l~~~k~ 612 (617)
+...... + +.....-.+++.+|.
T Consensus 195 ~~~~v~~~~lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 195 ELENIHSFKLPIEESDRNIMVIRKI 219 (239)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeCCCCCCCEEEEEEEEC
Confidence 7654321 1 122233457777763
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=91.04 E-value=0.14 Score=49.56 Aligned_cols=152 Identities=8% Similarity=0.175 Sum_probs=88.2
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcc---cccc
Q 039518 445 TDTSFWQDQVRHYWQLMNVNETEIRNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGI---LGAF 516 (617)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGl---ig~~ 516 (617)
.||+.+-+.+-.+.... ....|+|+|||.|..+.++...|=+ +|+-+|-. .-+.++-+ -|+ +-+.
T Consensus 93 peTE~lv~~~~~~~~~~-----~~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~ 165 (271)
T d1nv8a_ 93 PETEELVELALELIRKY-----GIKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVR 165 (271)
T ss_dssp TTHHHHHHHHHHHHHHH-----TCCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred hhhhhhhhhhhhhhccc-----cccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCceeEEe
Confidence 46778887777766532 2467999999999887777544421 12333444 44444332 244 2333
Q ss_pred -cccCCCCCCCCCccchhhccccccc----------cc------cCCCCCChhhHHhhhhhcccCCceEEEecChHHHHH
Q 039518 517 -HDWCEPFSTYPRTYDLLHANHLFSH----------YK------NRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITR 579 (617)
Q Consensus 517 -~~~~~~f~typrtyDl~H~~~~~s~----------~~------~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~ 579 (617)
.||-++++.....||+|=++==.-. |+ ...++..+-.-+ +-++|+|||++++-=..+.-++
T Consensus 166 ~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i--~~~~L~~~G~l~~Eig~~Q~~~ 243 (271)
T d1nv8a_ 166 KGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF--FGRYDTSGKIVLMEIGEDQVEE 243 (271)
T ss_dssp ESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH--HHHCCCTTCEEEEECCTTCHHH
T ss_pred ecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH--HHHhcCCCCEEEEEECHHHHHH
Confidence 3566665543357888766511100 00 011121111112 3689999999999644455678
Q ss_pred HHhhhhcCCceEEEeeccccCCCceeEEEEEec
Q 039518 580 IRDLAPKFLWDVELHSLENREKKMESVLICRKK 612 (617)
Q Consensus 580 ~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~k~ 612 (617)
|+++++...| ..| -.+.+++++++|+
T Consensus 244 v~~l~~~~g~---~kD----l~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 244 LKKIVSDTVF---LKD----SAGKYRFLLLNRR 269 (271)
T ss_dssp HTTTSTTCEE---EEC----TTSSEEEEEEECC
T ss_pred HHHHHHhCCE---Eec----cCCCcEEEEEEEc
Confidence 8888887665 233 2456899999986
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.00 E-value=0.097 Score=46.08 Aligned_cols=93 Identities=11% Similarity=0.052 Sum_probs=59.2
Q ss_pred cCCCCeEEEECCCC-cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC-----CCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGV-ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP-----YPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGt-G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp-----f~d~sFDlV~~ 298 (617)
++++.+||=+|+|. |..+..+++. |. .+..+|.++..++.+++.|....+...+ ++.. ...+.+|.|.+
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~---~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~-~~~~~~~~~~~~g~~~~i~~ 100 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGL---HVAAIDIDDAKLELARKLGASLTVNARQ-EDPVEAIQRDIGGAHGVLVT 100 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEEC
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCC---ccceecchhhHHHhhhccCccccccccc-hhHHHHHHHhhcCCcccccc
Confidence 46778899999873 4555555554 53 5666789999999999988643332111 1110 11233455554
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
+. ....+....++|+|||.+++..
T Consensus 101 ~~--------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 101 AV--------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp CS--------CHHHHHHHHTTEEEEEEEEECC
T ss_pred cc--------cchHHHHHHHHhcCCcEEEEEE
Confidence 31 2356888999999999999865
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.92 E-value=0.097 Score=46.75 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=63.8
Q ss_pred cccCCCCeEEEECCCCc-HHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-----CCCCCCeeEE
Q 039518 224 LRSAGVFQVLDVGCGVA-SFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-----PYPSSSFEMV 296 (617)
Q Consensus 224 lr~~~g~rVLDIGCGtG-~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-----pf~d~sFDlV 296 (617)
..+++|.+||=+|||.- ..+..+++. +.. .+...|.++..++.+++.|....+. .+.++. .+.++.||+|
T Consensus 24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~--~v~~~~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 24 LKVTPASSFVTWGAGAVGLSALLAAKVCGAS--IIIAVDIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTSCEEEE
T ss_pred hCCCCCCEEEEeCCCHHHhhhhhcccccccc--eeeeeccHHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcCCCCcEE
Confidence 34678889999998743 344444433 554 3445688999999999988643322 111111 0224579999
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+-. . .-...+....++++|+|.+++.+.
T Consensus 101 id~------~-G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 101 LES------T-GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEC------S-CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEc------C-CcHHHHHHHHhcccCceEEEEEee
Confidence 832 1 234678899999999999998753
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=90.56 E-value=0.068 Score=50.75 Aligned_cols=95 Identities=8% Similarity=0.082 Sum_probs=59.9
Q ss_pred CCeeeEEeccccccchhhhccC----CCeEEEEeccCCCCchhHHHHhhcccccccccCCCCCCCCCccchhhccccccc
Q 039518 466 TEIRNAMDMNAYCGGFAVALNS----LPVWVMNIVPISMKNTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSH 541 (617)
Q Consensus 466 ~~~Rn~mDm~~~~g~faa~l~~----~~v~vmnv~p~~~~~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~ 541 (617)
..++.|+|+|||.|.++.+|.+ -.+.+.-.-++-+..+.. + .+-.+-||.-++.|.. ..|-|-| ++-.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~---~-r~~~~~~d~~~~~P~a-d~~~l~~---vlh~ 151 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSY---P-GVEHVGGDMFVSIPKA-DAVFMKW---ICHD 151 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCC---T-TEEEEECCTTTCCCCC-SCEECSS---SSTT
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccC---C-ceEEecccccccCCCc-ceEEEEE---Eeec
Confidence 5689999999999999999964 345666554443332211 1 2566778877766531 2333333 3333
Q ss_pred cccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 542 YKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 542 ~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
|. -. ....||-++=+.|+|||.++|-|
T Consensus 152 ~~--d~--~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 152 WS--DE--HCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp SC--HH--HHHHHHHHHHHHCCSSSCEEEEE
T ss_pred CC--HH--HHHHHHHHHHHhcCCCceEEEEE
Confidence 31 11 12368999999999999998863
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=89.91 E-value=0.73 Score=42.56 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=74.2
Q ss_pred chhhHHHHHHHHHHhcc-CCCCCeeeEEeccccccchhh---hccCCCeEEEEeccCCCC-chhHH-HHhhcc--ccccc
Q 039518 446 DTSFWQDQVRHYWQLMN-VNETEIRNAMDMNAYCGGFAV---ALNSLPVWVMNIVPISMK-NTLSA-IYNRGI--LGAFH 517 (617)
Q Consensus 446 d~~~w~~~v~~y~~~~~-~~~~~~Rn~mDm~~~~g~faa---~l~~~~v~vmnv~p~~~~-~~l~~-~~~RGl--ig~~~ 517 (617)
..+.|.+++-+=...+. +..+ +++|+|+|- ||-+ |+...++=+.=|-+..-. +-|.- +-+=|| +=++|
T Consensus 46 ~~~~~~rHi~DSl~~~~~~~~~---~ilDiGsGa-G~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~ 121 (207)
T d1jsxa_ 46 PNEMLVRHILDSIVVAPYLQGE---RFIDVGTGP-GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ 121 (207)
T ss_dssp --CHHHHHHHHHHHHGGGCCSS---EEEEETCTT-TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHhcchHhhhhhhcCC---ceeeeeccC-CceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeec
Confidence 34667666644333333 4433 699999994 4433 333333322222222222 33433 455577 56678
Q ss_pred ccCCCCCCCCCccchhhccccccccccCCCCCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhhhcCCceEE
Q 039518 518 DWCEPFSTYPRTYDLLHANHLFSHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLAPKFLWDVE 592 (617)
Q Consensus 518 ~~~~~f~typrtyDl~H~~~~~s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~ 592 (617)
+.-|.+.. ...||.|= ++-| +++..++=-.-..|+|+|.+++-.-....++++.+-+ .|+..
T Consensus 122 ~R~E~~~~-~~~fD~V~-sRA~---------~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~~--~~~~~ 183 (207)
T d1jsxa_ 122 SRVEEFPS-EPPFDGVI-SRAF---------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVE 183 (207)
T ss_dssp CCTTTSCC-CSCEEEEE-CSCS---------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEE
T ss_pred cchhhhcc-ccccceeh-hhhh---------cCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhhc--CCEEE
Confidence 88887653 24789874 2333 3455666666788999999999866666666666544 56543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.062 Score=47.70 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=60.5
Q ss_pred ccCCCCeEEEECCC-CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCCCCCCeeEEEecccc
Q 039518 225 RSAGVFQVLDVGCG-VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPYPSSSFEMVHCSRCR 302 (617)
Q Consensus 225 r~~~g~rVLDIGCG-tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf~d~sFDlV~~s~~l 302 (617)
++++|++||=+|+| .|.++..+++. |...+ .+|.++...+.+++.|....+...+........+.||+|+-.-.
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i---~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g- 102 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVV---AFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA- 102 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE---EEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcccccch---hhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-
Confidence 45788899999986 35666666653 65443 34556666788888886543322111111112356999884321
Q ss_pred cccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 303 VDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 303 ~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-...+....++|+|||.+++...
T Consensus 103 ------~~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 103 ------APHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ------SCCCHHHHHTTEEEEEEEEECCC
T ss_pred ------cchhHHHHHHHHhcCCEEEEecc
Confidence 11246777899999999999753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=88.51 E-value=0.77 Score=46.03 Aligned_cols=44 Identities=18% Similarity=0.451 Sum_probs=33.0
Q ss_pred CCCCCCeeEEEeccccccccc---------------------------------chHHHHHHHHHhccCCeEEEEEeC
Q 039518 287 PYPSSSFEMVHCSRCRVDWHA---------------------------------NDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 287 pf~d~sFDlV~~s~~l~h~~~---------------------------------d~~~~L~el~RvLrPGG~Liis~p 331 (617)
-||+++.|+++|+.++ ||.. |...+|+.=.+-|+|||.++++..
T Consensus 134 LfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 134 LFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp CSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred cCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 3789999999998754 5631 123467777788999999999864
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.51 E-value=0.22 Score=46.08 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=51.4
Q ss_pred EEEecCCC-C-CCCCCCeeEEEeccccc----cc---------ccchHHHHHHHHHhccCCeEEEEEeCCCCCCCCCChh
Q 039518 278 ISALSTKQ-L-PYPSSSFEMVHCSRCRV----DW---------HANDGILLKEVDRVLRPNGYFVYSAPPAYRKDKDYPL 342 (617)
Q Consensus 278 ~~~~d~~~-L-pf~d~sFDlV~~s~~l~----h~---------~~d~~~~L~el~RvLrPGG~Liis~p~~~~~~~~~~~ 342 (617)
+..+|..+ | .++++++|+|+++--.. .+ .+.....+.++.|+|+|||.+++.... .
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---------~ 77 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---------F 77 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---------H
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---------h
Confidence 45555422 1 24688999999873210 11 111245788999999999998875421 1
Q ss_pred hHHHHHHHHHHcCceEEEEeeeeEEEeeccc
Q 039518 343 IWDKLVNLTTAMCWKLIARKIQTAIWIKEEN 373 (617)
Q Consensus 343 ~W~~le~La~~~gw~~v~~~~~~~IwqKp~~ 373 (617)
....+...+...||.... ..+|.|+..
T Consensus 78 ~~~~~~~~~~~~g~~~~~----~iiW~k~~~ 104 (256)
T d1g60a_ 78 NCAFICQYLVSKGMIFQN----WITWDKRDG 104 (256)
T ss_dssp HHHHHHHHHHHTTCEEEE----EEEECCCCS
T ss_pred hhhhhhhhhhcccceeee----eeEeeeccc
Confidence 133456667778887553 568988764
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.73 E-value=0.82 Score=44.88 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhhccCCcccCCCCeEEEECCCCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHh--CCCcEEEEecC
Q 039518 208 EYIQRLGNMMTNETGNLRSAGVFQVLDVGCGVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALER--GIGAMISALST 283 (617)
Q Consensus 208 ~Y~~~L~~~L~~~~~~lr~~~g~rVLDIGCGtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~er--g~~~~~~~~d~ 283 (617)
...+.|.+.+..... .....+..|||||.|.|.++..|++. ++. .+..+|+++...+..++. +.++.+...|.
T Consensus 24 ~i~~~Iv~~~~l~~~-~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~--~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~ 99 (322)
T d1i4wa_ 24 TVYNKIFDKLDLTKT-YKHPEELKVLDLYPGVGIQSAIFYNKYCPR--QYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHCGGGT-CCCTTTCEEEEESCTTCHHHHHHHHHHCCS--EEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred HHHHHHHHHhcCCcc-ccccCCCeEEEECCCCCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHhccCCCcEEEeCch
Confidence 455555555533221 22234567999999999999999876 332 456678898888877765 23455555554
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=86.01 E-value=0.51 Score=43.15 Aligned_cols=117 Identities=10% Similarity=0.098 Sum_probs=62.4
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhc-cccc-ccccCCCCCCCCCccchhhccccccccccC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRG-ILGA-FHDWCEPFSTYPRTYDLLHANHLFSHYKNR 545 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RG-lig~-~~~~~~~f~typrtyDl~H~~~~~s~~~~~ 545 (617)
.+|||+|||.|+++.++...+-- .|+-.|-. ..+..+.+.- ..++ ..-.+.-...++..||+|=++--|...
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~--- 122 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQ--- 122 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSS---
T ss_pred CEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccccc---
Confidence 47999999999998665555421 12222333 4454444321 0111 111122233456789998766655421
Q ss_pred CCCCChhhHHhhhhhcccCCceE--EEecChHHHHHHHhhhhcCCceEEEe
Q 039518 546 GEVCSLEDIMLEMDLIIRPQGFI--IIRDEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 546 ~~~c~~~~~l~e~dRilRP~G~~--i~~d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
.....+..+. +.+.+++.+ +-.......+.++++++...|.+...
T Consensus 123 ~~~~d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 123 RKHADRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp STTTTHHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred cccccHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEEE
Confidence 3334443332 233344433 33456666677888888888876554
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.96 E-value=0.34 Score=42.87 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=59.6
Q ss_pred ccCCCCeEEEECC--CCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------CCCCCeeE
Q 039518 225 RSAGVFQVLDVGC--GVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------YPSSSFEM 295 (617)
Q Consensus 225 r~~~g~rVLDIGC--GtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------f~d~sFDl 295 (617)
++++|.+||=.|. |.|.++..+++. +..++.+ ..+++..+.+++.|....+. ...+++. .....||+
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~---~~~~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~~g~d~ 97 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTT---AGSDAKREMLSRLGVEYVGD-SRSVDFADEILELTDGYGVDV 97 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEE---ESSHHHHHHHHTTCCSEEEE-TTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCCCCEEEEECCCCCcccccchhhccccccceee---eccccccccccccccccccc-CCccCHHHHHHHHhCCCCEEE
Confidence 4577889999873 455666666654 5544333 34566678888877653322 1111110 12456999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+.... ...+.++.++|+++|.++..+
T Consensus 98 v~d~~g--------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 98 VLNSLA--------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEECCC--------THHHHHHHHTEEEEEEEEECS
T ss_pred EEeccc--------chHHHHHHHHhcCCCEEEEEc
Confidence 996421 246788899999999999864
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=85.42 E-value=0.21 Score=49.27 Aligned_cols=145 Identities=10% Similarity=0.021 Sum_probs=74.3
Q ss_pred CCCeeeEEeccccccchhhhccCC-CeEEEEeccCCCCchhHHHHhh------c------ccccccccCCCCCCCCCccc
Q 039518 465 ETEIRNAMDMNAYCGGFAVALNSL-PVWVMNIVPISMKNTLSAIYNR------G------ILGAFHDWCEPFSTYPRTYD 531 (617)
Q Consensus 465 ~~~~Rn~mDm~~~~g~faa~l~~~-~v~vmnv~p~~~~~~l~~~~~R------G------lig~~~~~~~~f~typrtyD 531 (617)
...-++||.+|.|.|+.+..+... ++--+-+|-.|. .-+.++-+. | +==+..|.-+-....++.||
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~-~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG-ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH-HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH-HHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence 346799999999999999888665 442222333332 222222111 1 00112233333334578999
Q ss_pred hhhccccccccccCCCCCCh--hhHHhhhhhcccCCceEEEe------cChHHHHHHHhhhhcCCceEEEeecc--ccCC
Q 039518 532 LLHANHLFSHYKNRGEVCSL--EDIMLEMDLIIRPQGFIIIR------DEKSLITRIRDLAPKFLWDVELHSLE--NREK 601 (617)
Q Consensus 532 l~H~~~~~s~~~~~~~~c~~--~~~l~e~dRilRP~G~~i~~------d~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~ 601 (617)
+|-.+.. .-+........+ ...+-.+-|+|+|||.++.. ...++...|.+.+++.=..+.....- ..+
T Consensus 154 vIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~- 231 (312)
T d1uira_ 154 VVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFF- 231 (312)
T ss_dssp EEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGT-
T ss_pred EEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcC-
Confidence 9985431 111000000111 25677899999999999984 23456666765554443444433211 111
Q ss_pred CceeEEEEEec
Q 039518 602 KMESVLICRKK 612 (617)
Q Consensus 602 ~~~~~l~~~k~ 612 (617)
..-..+++.|.
T Consensus 232 ~~w~f~~aS~~ 242 (312)
T d1uira_ 232 LNFGFLLASDA 242 (312)
T ss_dssp EEEEEEEEESS
T ss_pred CCCEeEEEeCC
Confidence 12346677664
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.16 E-value=0.41 Score=41.56 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=59.2
Q ss_pred cCCCCeEEEECCCCc-HHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC-----CCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVA-SFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP-----YPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG-~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp-----f~d~sFDlV~~ 298 (617)
+.++++||=.|+|.- ..+..+++. +. .+..++.++..++.+++.|....+...+ +++. ...+.+|+|.+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~---~v~~~~~~~~r~~~~k~~Ga~~~~~~~~-~~~~~~~~~~~~~~~~~v~~ 100 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGL---NVVAVDIGDEKLELAKELGADLVVNPLK-EDAAKFMKEKVGGVHAAVVT 100 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHTTCSEEECTTT-SCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCC---eEeccCCCHHHhhhhhhcCcceeccccc-chhhhhcccccCCCceEEee
Confidence 457888999998754 444455444 44 4566788999999999988653322111 1110 11334555543
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
. --...+....+.|+|||.+++..
T Consensus 101 ~--------~~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 101 A--------VSKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp S--------CCHHHHHHHHHHEEEEEEEEECC
T ss_pred c--------CCHHHHHHHHHHhccCCceEecc
Confidence 2 12457899999999999999975
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.11 E-value=0.035 Score=48.96 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=49.2
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHh----hcccc---ccc-ccCCCCCCCCCccchhhccccc
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYN----RGILG---AFH-DWCEPFSTYPRTYDLLHANHLF 539 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~----RGlig---~~~-~~~~~f~typrtyDl~H~~~~~ 539 (617)
.+|||++||+|+|+...+++..= +|.=.|.. +.+..+-+ -|+-. +++ |.-+.+......||+|.++-=|
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 47999999999999644444431 22223443 33332221 23322 222 1111122234789999876433
Q ss_pred cccccCCCCCChhhHHhhhhhcccCCceEEEec
Q 039518 540 SHYKNRGEVCSLEDIMLEMDLIIRPQGFIIIRD 572 (617)
Q Consensus 540 s~~~~~~~~c~~~~~l~e~dRilRP~G~~i~~d 572 (617)
... ...- ..+.+.+ .++|+|+|.+|+..
T Consensus 94 ~~~---~~~~-~l~~i~~-~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 AKE---TIVA-TIEALAA-KNLLSEQVMVVCET 121 (152)
T ss_dssp HHH---HHHH-HHHHHHH-TTCEEEEEEEEEEE
T ss_pred ccc---hHHH-HHHHHHH-CCCcCCCeEEEEEe
Confidence 310 0000 1122333 47999999999953
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.16 E-value=0.63 Score=40.91 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=61.5
Q ss_pred cCCCCeEEEECCCCc-HHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC-----CCCCCeeEEEe
Q 039518 226 SAGVFQVLDVGCGVA-SFSAFLLP-LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP-----YPSSSFEMVHC 298 (617)
Q Consensus 226 ~~~g~rVLDIGCGtG-~~a~~La~-~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp-----f~d~sFDlV~~ 298 (617)
++++.+||-+|+|.. ..+..+++ .+.. .+...|.++..++.+++.|....+ ..+.+... ...+.+|+|+-
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~--~vv~~~~~~~k~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~~g~d~vid 106 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPA--TVIALDVKEEKLKLAERLGADHVV-DARRDPVKQVMELTRGRGVNVAMD 106 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCC--EEEEEESSHHHHHHHHHTTCSEEE-ETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCc--ccccccchhHHHHHHhhcccceee-cCcccHHHHHHHhhCCCCceEEEE
Confidence 356778999998754 44445544 3543 345668888988999988754332 21111100 12345999984
Q ss_pred cccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 299 SRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 299 s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
.- .-...+....+.|++||.+++...
T Consensus 107 ~~-------g~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 107 FV-------GSQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp SS-------CCHHHHHHGGGGEEEEEEEEECCC
T ss_pred ec-------CcchHHHHHHHHHhCCCEEEEEeC
Confidence 31 233578999999999999999763
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.07 E-value=1 Score=39.75 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=62.9
Q ss_pred ccCCCCeEEEECCCC--cHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------CCCCCeeE
Q 039518 225 RSAGVFQVLDVGCGV--ASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------YPSSSFEM 295 (617)
Q Consensus 225 r~~~g~rVLDIGCGt--G~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------f~d~sFDl 295 (617)
++++|++||=.|++. |..+..|++. |..++ .+..+++..+.+++.|....+...+ +... ...+.+|+
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi---~~~~~~~~~~~~~~~Ga~~vi~~~~-~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVV---GAAGSDEKIAYLKQIGFDAAFNYKT-VNSLEEALKKASPDGYDC 101 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEE---EEESSHHHHHHHHHTTCSEEEETTS-CSCHHHHHHHHCTTCEEE
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEE---EeCCCHHHHHHHHhhhhhhhccccc-ccHHHHHHHHhhcCCCce
Confidence 457888999888754 5666777665 55444 4456777888888888654443222 1110 12346999
Q ss_pred EEecccccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 296 VHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 296 V~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
|+-. . ....+.+..++|+|||.+++..
T Consensus 102 v~D~------v--G~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 102 YFDN------V--GGEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEES------S--CHHHHHHHGGGEEEEEEEEECC
T ss_pred eEEe------c--CchhhhhhhhhccCCCeEEeec
Confidence 9843 1 2457899999999999999865
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=84.04 E-value=0.45 Score=46.81 Aligned_cols=124 Identities=17% Similarity=0.142 Sum_probs=63.0
Q ss_pred eeEEeccccccchhhhccC-CCeEEEEeccCCCC-chhHHHHh-hccccccc--------ccCCCCCCCCCccchhhcc-
Q 039518 469 RNAMDMNAYCGGFAVALNS-LPVWVMNIVPISMK-NTLSAIYN-RGILGAFH--------DWCEPFSTYPRTYDLLHAN- 536 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~-~~v~vmnv~p~~~~-~~l~~~~~-RGlig~~~--------~~~~~f~typrtyDl~H~~- 536 (617)
+.|||+.||+|||+-++.. ..-.|.+|-..... ....--++ .|+=..-| +|.+.+..-.+.||+|=.+
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DP 225 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 225 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcC
Confidence 6899999999999865533 33356665333322 22222222 23311111 1111111123678888654
Q ss_pred ccccccccCCCCCC----hhhHHhhhhhcccCCceEEEe------cChHHHHHHHhhhhcCCceEEEe
Q 039518 537 HLFSHYKNRGEVCS----LEDIMLEMDLIIRPQGFIIIR------DEKSLITRIRDLAPKFLWDVELH 594 (617)
Q Consensus 537 ~~~s~~~~~~~~c~----~~~~l~e~dRilRP~G~~i~~------d~~~~~~~~~~~~~~~~W~~~~~ 594 (617)
-.|+.- .+..=. ...++-..=++|+|||.+++. +..+....|++.+..-.+.....
T Consensus 226 P~f~~~--~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 226 PSFARN--KKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp CCC-------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hhhccc--hhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 223310 011111 125666666899999999996 33344555555555445554433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.02 E-value=0.58 Score=41.68 Aligned_cols=99 Identities=9% Similarity=-0.019 Sum_probs=59.8
Q ss_pred ccCCCCeEEEECCCCc-HHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------CCCCCeeEE
Q 039518 225 RSAGVFQVLDVGCGVA-SFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------YPSSSFEMV 296 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG-~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------f~d~sFDlV 296 (617)
+.++|.+||=+|||.. .++..+++. +.. .|..+|.+++.++.|++.|....+...+..... ...+.+|+|
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~--~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~v 103 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYT 103 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEE
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCc--eEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEE
Confidence 4578889999999844 444444443 432 567789999999999999976544322211110 123458988
Q ss_pred EecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+-. ..........+..+++++|.+++...
T Consensus 104 i~~------~g~~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 104 FEV------IGHLETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp EEC------SCCHHHHHHHHTTSCTTTCEEEECSC
T ss_pred EEe------CCchHHHHHHHHHhhcCCeEEEEEEc
Confidence 732 11233333344455566699988753
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=83.68 E-value=0.57 Score=41.62 Aligned_cols=97 Identities=8% Similarity=-0.055 Sum_probs=59.9
Q ss_pred ccCCCCeEEEECCCCc-HHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCC-C-----CCCCCeeEE
Q 039518 225 RSAGVFQVLDVGCGVA-SFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQL-P-----YPSSSFEMV 296 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG-~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~L-p-----f~d~sFDlV 296 (617)
++++|.+||=+|||.. ..+..+++. +.. .+..+|.++..++.|++.|....+...+.... . ...+-+|.|
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~--~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~v 101 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGAS--RIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYA 101 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCc--eeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEE
Confidence 4678899999999854 444444443 543 46677999999999999886544322111111 0 123458888
Q ss_pred EecccccccccchHHHHHHHHHhccC-CeEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRP-NGYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrP-GG~Liis~ 330 (617)
+-. . .....+.+....+++ +|.+++..
T Consensus 102 id~------~-g~~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 102 VEC------A-GRIETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp EEC------S-CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred EEc------C-CCchHHHHHHHHHHHhcCceEEEE
Confidence 743 1 233466666666655 69988865
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=83.27 E-value=0.65 Score=40.76 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=64.1
Q ss_pred cccCCCCeEEEECCC--CcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------CCCCCee
Q 039518 224 LRSAGVFQVLDVGCG--VASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------YPSSSFE 294 (617)
Q Consensus 224 lr~~~g~rVLDIGCG--tG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------f~d~sFD 294 (617)
.++++|.+||=.|+| .|.++..+++. |. .+...+.+++..+.+++.|....+.. ..+++. ...+.+|
T Consensus 24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga---~Vi~~~~s~~k~~~~~~lGa~~vi~~-~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 24 YEIKPDEQFLFHAAAGGVGLIACQWAKALGA---KLIGTVGTAQKAQSALKAGAWQVINY-REEDLVERLKEITGGKKVR 99 (179)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHHHTCSEEEET-TTSCHHHHHHHHTTTCCEE
T ss_pred hCCCCCCEEEEEccccccchHHHHHHHHhCC---eEeecccchHHHHHHHhcCCeEEEEC-CCCCHHHHHHHHhCCCCeE
Confidence 346788899999766 56777777765 55 45566888998899999886533321 111110 1245699
Q ss_pred EEEecccccccccchHHHHHHHHHhccCCeEEEEEeC
Q 039518 295 MVHCSRCRVDWHANDGILLKEVDRVLRPNGYFVYSAP 331 (617)
Q Consensus 295 lV~~s~~l~h~~~d~~~~L~el~RvLrPGG~Liis~p 331 (617)
+|+..-. ...+....+.|+++|.+++...
T Consensus 100 ~v~d~~g--------~~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 100 VVYDSVG--------RDTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp EEEECSC--------GGGHHHHHHTEEEEEEEEECCC
T ss_pred EEEeCcc--------HHHHHHHHHHHhcCCeeeeccc
Confidence 9885421 1357788999999999887543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.02 E-value=2.6 Score=40.12 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=76.0
Q ss_pred CeEEEECCCCcHHHHHhccCCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCCC---CCCCeeEEEeccccccc-
Q 039518 230 FQVLDVGCGVASFSAFLLPLDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLPY---PSSSFEMVHCSRCRVDW- 305 (617)
Q Consensus 230 ~rVLDIGCGtG~~a~~La~~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lpf---~d~sFDlV~~s~~l~h~- 305 (617)
.+|+|+-||.|.+..-|...|+..--+.++|+++.+++.-+.+.....+...|+.++.. +...+|+++.+.---.+
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~fS 82 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeeccccccc
Confidence 47999999999988888766765434567799999988777775555666667766542 22358999865211111
Q ss_pred --------ccchHHHHHHHHHhc-----cCCeEEEEE-eCCCCCCCCCChhhHHHHHHHHHHcCceEEE
Q 039518 306 --------HANDGILLKEVDRVL-----RPNGYFVYS-APPAYRKDKDYPLIWDKLVNLTTAMCWKLIA 360 (617)
Q Consensus 306 --------~~d~~~~L~el~RvL-----rPGG~Liis-~p~~~~~~~~~~~~W~~le~La~~~gw~~v~ 360 (617)
.++...++.++.|++ ||- +|++. ++.. .....++.+...++++|+.+..
T Consensus 83 ~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l-----~~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T d1g55a_ 83 RIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGF-----EVSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp -------------CHHHHHHHHGGGCSSCCS-EEEEEEETTG-----GGSHHHHHHHHHHHHTTEEEEE
T ss_pred ccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCc-----ccchhhHHHHhhhhccccccce
Confidence 112233556666654 465 44443 3221 1112367788888999987654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.60 E-value=0.58 Score=42.01 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=60.4
Q ss_pred CCCCeEEEECC--CCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC--CC-CCCCCCCeeEEEecc
Q 039518 227 AGVFQVLDVGC--GVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALST--KQ-LPYPSSSFEMVHCSR 300 (617)
Q Consensus 227 ~~g~rVLDIGC--GtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~--~~-Lpf~d~sFDlV~~s~ 300 (617)
.+|.+||=.|+ |.|.++..|++. |..++.... +++-.+.+++.|....+..-+. +. .....+.||+|+-.-
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~---s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTG---KAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecC---chHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence 45677999885 566888888754 776655543 4445577777776544322111 11 122346799998431
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEeCC
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSAPP 332 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~p~ 332 (617)
....+.+..++|+|||.++.....
T Consensus 107 --------gg~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 107 --------GGRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp --------TTTTHHHHHHTEEEEEEEEECSCC
T ss_pred --------CchhHHHHHHHhCCCceEEEeecc
Confidence 123588999999999999998764
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=82.39 E-value=0.1 Score=46.59 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=57.9
Q ss_pred ccCCCCeEEEECC--CCcHHHHHhccC-CCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecC-CCCCCCCCCeeEEEecc
Q 039518 225 RSAGVFQVLDVGC--GVASFSAFLLPL-DIQTMSFAPKDGHENQIQFALERGIGAMISALST-KQLPYPSSSFEMVHCSR 300 (617)
Q Consensus 225 r~~~g~rVLDIGC--GtG~~a~~La~~-gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~-~~Lpf~d~sFDlV~~s~ 300 (617)
++++|++||=.|+ |.|.++..+++. |..+ ..++.++...+.+++.|....+...+. ... ...+.+|+|+-.
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~v---i~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~-~~~~g~D~v~d~- 98 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRV---LAAASRPEKLALPLALGAEEAATYAEVPERA-KAWGGLDLVLEV- 98 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEE---EEEESSGGGSHHHHHTTCSEEEEGGGHHHHH-HHTTSEEEEEEC-
T ss_pred CCCCCCEEEEEeccccchhhhhhhhccccccc---ccccccccccccccccccceeeehhhhhhhh-hccccccccccc-
Confidence 4578889999985 345666666654 6543 344556677788888887544322221 011 113459999842
Q ss_pred cccccccchHHHHHHHHHhccCCeEEEEEe
Q 039518 301 CRVDWHANDGILLKEVDRVLRPNGYFVYSA 330 (617)
Q Consensus 301 ~l~h~~~d~~~~L~el~RvLrPGG~Liis~ 330 (617)
.- ..+....+.|+|||.++..+
T Consensus 99 -~G-------~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 99 -RG-------KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp -SC-------TTHHHHHTTEEEEEEEEEC-
T ss_pred -cc-------hhHHHHHHHHhcCCcEEEEe
Confidence 21 13567889999999998864
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.35 E-value=0.16 Score=50.18 Aligned_cols=118 Identities=12% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCCCCeeeEEeccccccchhhhccCCCe-EEEEeccCCCC-chhHHH----HhhcccccccccCCC-------CCCCCCc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALNSLPV-WVMNIVPISMK-NTLSAI----YNRGILGAFHDWCEP-------FSTYPRT 529 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~~~~v-~vmnv~p~~~~-~~l~~~----~~RGlig~~~~~~~~-------f~typrt 529 (617)
+..| .+|||++||.|+|+.++..... -|.+| |.. ..+..+ -.-|+-...+-.+.. +.--.++
T Consensus 143 ~~~g--~~VLDl~~g~G~~si~~a~~ga~~V~~v---D~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~ 217 (324)
T d2as0a2 143 VQPG--DRVLDVFTYTGGFAIHAAIAGADEVIGI---DKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEK 217 (324)
T ss_dssp CCTT--CEEEETTCTTTHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCC--CeeecccCcccchhhhhhhcCCcEEEee---cCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCC
Confidence 3445 4899999999999987765542 34333 332 333332 223443333322221 1112367
Q ss_pred cchhhcccc-ccccccC--CCCCChhhHHhhhhhcccCCceEEEec------ChHHHHHHHhhhh
Q 039518 530 YDLLHANHL-FSHYKNR--GEVCSLEDIMLEMDLIIRPQGFIIIRD------EKSLITRIRDLAP 585 (617)
Q Consensus 530 yDl~H~~~~-~s~~~~~--~~~c~~~~~l~e~dRilRP~G~~i~~d------~~~~~~~~~~~~~ 585 (617)
||+|=.+-- |+..+.. ........++...=++|+|||.+++.. ..+..+.|.+-+.
T Consensus 218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~ 282 (324)
T d2as0a2 218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGA 282 (324)
T ss_dssp EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHH
Confidence 888865432 2211000 000112367888889999999999963 2344455555443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=81.60 E-value=0.27 Score=45.31 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=50.1
Q ss_pred eeEEeccccccchhhhccCCCeEEEEeccCCCC-chhHHHHhhcccccccccCCCCCCCCCccchhhccccccccccCCC
Q 039518 469 RNAMDMNAYCGGFAVALNSLPVWVMNIVPISMK-NTLSAIYNRGILGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNRGE 547 (617)
Q Consensus 469 Rn~mDm~~~~g~faa~l~~~~v~vmnv~p~~~~-~~l~~~~~RGlig~~~~~~~~f~typrtyDl~H~~~~~s~~~~~~~ 547 (617)
++|+|+|||.|.++-++...+.- +|+-+|-. ..+..+-+.- .-..--|.-+...|..||+|=++--|-.. ..
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~--~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~---~~ 122 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNC--GGVNFMVADVSEISGKYDTWIMNPPFGSV---VK 122 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHC--TTSEEEECCGGGCCCCEEEEEECCCC--------
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHcc--ccccEEEEehhhcCCcceEEEeCcccchh---hh
Confidence 68999999999886444333221 22233333 5655554431 11111223334467889998766555311 11
Q ss_pred CCChhhHHhhhhhcccCCceEEEecChHHHHHHHhhh
Q 039518 548 VCSLEDIMLEMDLIIRPQGFIIIRDEKSLITRIRDLA 584 (617)
Q Consensus 548 ~c~~~~~l~e~dRilRP~G~~i~~d~~~~~~~~~~~~ 584 (617)
..+. .+ ++..+.+++.+...-.....+-+++..
T Consensus 123 ~~D~--~f--l~~a~~~~~~iy~ih~~~~~~~i~~~~ 155 (197)
T d1ne2a_ 123 HSDR--AF--IDKAFETSMWIYSIGNAKARDFLRREF 155 (197)
T ss_dssp --CH--HH--HHHHHHHEEEEEEEEEGGGHHHHHHHH
T ss_pred hchH--HH--HHHHHhcCCeEEEehhhhHHHHHHHHh
Confidence 1221 22 345566665544332333334444443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.88 E-value=0.91 Score=39.83 Aligned_cols=97 Identities=9% Similarity=-0.053 Sum_probs=59.8
Q ss_pred ccCCCCeEEEECCCCc-HHHHHhcc-CCCcEEEeeecCCcHHHHHHHHHhCCCcEEEEecCCCCC------CCCCCeeEE
Q 039518 225 RSAGVFQVLDVGCGVA-SFSAFLLP-LDIQTMSFAPKDGHENQIQFALERGIGAMISALSTKQLP------YPSSSFEMV 296 (617)
Q Consensus 225 r~~~g~rVLDIGCGtG-~~a~~La~-~gv~~v~v~~iDis~~~lq~A~erg~~~~~~~~d~~~Lp------f~d~sFDlV 296 (617)
++++|.+||=+|+|.+ ..+..+++ .+.. .+..+|.++...+.+++.|....+...+.++.- ...+.+|+|
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~--~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~v 102 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAA--RIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFS 102 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcCCc--eEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEE
Confidence 4678899999999744 33333333 3433 566678899999999998875443322222210 123569998
Q ss_pred EecccccccccchHHHHHHHHHhccCC-eEEEEEe
Q 039518 297 HCSRCRVDWHANDGILLKEVDRVLRPN-GYFVYSA 330 (617)
Q Consensus 297 ~~s~~l~h~~~d~~~~L~el~RvLrPG-G~Liis~ 330 (617)
+-.. -....+......+++| |.+++..
T Consensus 103 id~~-------G~~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 103 FEVI-------GRLDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp EECS-------CCHHHHHHHHHHBCTTTCEEEECS
T ss_pred EecC-------CchhHHHHHHHHHhcCCcceEEec
Confidence 8432 2335667777888886 5666543
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.49 E-value=0.22 Score=46.75 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=18.2
Q ss_pred CCCCCeeeEEeccccccchhhhcc
Q 039518 463 VNETEIRNAMDMNAYCGGFAVALN 486 (617)
Q Consensus 463 ~~~~~~Rn~mDm~~~~g~faa~l~ 486 (617)
+.++ -+|||+|||.|-++|.|.
T Consensus 78 l~~g--~~VLeIGtGsGY~ta~la 99 (223)
T d1r18a_ 78 LKPG--ARILDVGSGSGYLTACFY 99 (223)
T ss_dssp CCTT--CEEEEESCTTSHHHHHHH
T ss_pred cCCC--CeEEEecCCCCHHHHHHH
Confidence 6666 589999999999988774
|