Citrus Sinensis ID: 039523

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESVHVSSLEGSIMGRSQENEHLMEFLWKILQQAAHVYMIIFFPSFNTE
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHHHHHHHHcHHHHcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHcccccccccccccccccccccccccHEEcHHHcccccccccccHHHHHHHHHHHHHHHccEEEEEEccccccc
Coil and Loop (DISEMBL)
MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAvqldpengeAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLegrtsviesdscrtthnvnstnntcakdlHVESVHVSslegsimgrSQENEHLMEFLWKILQQAAHVYMIIFFPSFNTE
Flexible Loop (DISEMBL)
MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRavqldpengeAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNItnnkridtELLERIVLNLegrtsviesdscrtthnvnstnntcakdlHVESVHVSSLEGSIMGRSQENEHLMEFLWKILQQAAHVYMIIFFPSFNTE
Low Complexity Region (SEG)
MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESVHVSSLEGSIMGRSQENEHLMEFLWKILQQAAHVYMIIFFPSFNTE
Disordered region (IsUnstruct)
*******LWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESVHV**************EHLMEFLWKILQQAAHVYMIIFFPS****
Disordered Region (DISOPRED)
MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESVHVSSLEGSIMGRSQENEHLMEFLWKILQQAAHVYMIIFFPSFN**
Disordered Region (DISEMBL)
MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESVHVSSLEGSIMGRSQENEHLMEFLWKILQQAAHVYMIIFFPSFNTE
Disordered Region (DISPRO)
MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRTS*I*************TNNTCAKDLHVESVHVSSLEGSIMGRSQENEHLMEFLWKILQQAAHVYMIIFFPSFN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESVHVSSLEGSIMGRSQENEHLMEFLWKILQQAAHVYMIIFFPSFNTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q54BW6	853	Tetratricopeptide repeat	yes	no	0.577	0.165	0.366	3e-22
Q8CD92	847	Tetratricopeptide repeat	yes	no	0.5	0.144	0.341	4e-15
Q17QZ7	847	Tetratricopeptide repeat	yes	no	0.5	0.144	0.341	5e-15
Q6P3X3	843	Tetratricopeptide repeat	yes	no	0.5	0.144	0.333	6e-15
Q5RBW9	843	Tetratricopeptide repeat	yes	no	0.487	0.141	0.333	1e-14
O36033	817	TPR repeat-containing pro	yes	no	0.586	0.175	0.275	2e-14
Q5F3K0	844	Tetratricopeptide repeat	yes	no	0.5	0.144	0.333	2e-14
P41842	771	TPR repeat-containing pro	yes	no	0.577	0.182	0.307	7e-11
P42842	904	Essential for maintenance	yes	no	0.467	0.126	0.286	2e-09
P56558	1036	UDP-N-acetylglucosamine--	no	no	0.405	0.095	0.252	2e-05

>sp|Q54BW6|TTC27_DICDI Tetratricopeptide repeat protein 27 homolog OS=Dictyostelium discoideum GN=ttc27 PE=3 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 86/142 (60%), Gaps = 1/142 (0%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           RSLAR    R +Y+      + A+A+N L+P+ WF+LG AA+K    + AL+ F+R V L
Sbjct: 564 RSLARFYLEREQYQLCIDAFQIALAINPLFPNSWFSLGCAAMKIEKWDTALNAFSRVVSL 623

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           +PE GE W  +A ++M +NK  +A  A  E LK KR  W++WEN+    + + +   A+ 
Sbjct: 624 EPEEGEGWANLASIYMYQNKMDKASSALMEGLKHKRENWKMWENFLFCCIAIKDYQNAVI 683

Query: 140 AVQMVLNITNNKRIDTELLERI 161
           A+  + ++ N+K+++ +LL  I
Sbjct: 684 AINHIFDL-NDKKVNLKLLSII 704

Dictyostelium discoideum (taxid: 44689)

>sp|Q8CD92|TTC27_MOUSE Tetratricopeptide repeat protein 27 OS=Mus musculus GN=Ttc27 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           E ++ +N +    WF+LG A L   D   +   F R V L+P+N EAWN ++  ++   +
Sbjct: 555 ERSVKINPMQLGVWFSLGCAYLALEDYGGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQ 614

Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159
             +AF   +EALK     WQ+WENY   + DVG  G+A++A   +L++  +K  D ++L+
Sbjct: 615 KVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFGEAIKAYHRLLDL-RDKYKDIQVLK 673

Query: 160 RIV 162
            +V
Sbjct: 674 ILV 676

Mus musculus (taxid: 10090)

>sp|Q17QZ7|TTC27_BOVIN Tetratricopeptide repeat protein 27 OS=Bos taurus GN=TTC27 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           E ++ +N +    WF+LG A L   D   +   F R V L+P+N EAWN ++  ++   +
Sbjct: 555 ERSLKINPMQLGVWFSLGCAYLALEDYGGSARAFQRCVTLEPDNAEAWNNLSTSYIRLKQ 614

Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159
             +AF   +EALK     WQ+WENY   + DVG   +A++A   +L++  +K  DT++L+
Sbjct: 615 KVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDL-RDKYKDTQVLK 673

Query: 160 RIV 162
            +V
Sbjct: 674 ILV 676

Bos taurus (taxid: 9913)

>sp|Q6P3X3|TTC27_HUMAN Tetratricopeptide repeat protein 27 OS=Homo sapiens GN=TTC27 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           E ++ +N +    WF+LG A L   D + +   F R V L+P+N EAWN ++  ++   +
Sbjct: 551 ERSVKINPMQLGVWFSLGCAYLALEDYQGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQ 610

Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159
             +AF   +EALK     WQ+WENY   + DVG   +A++A   +L++  +K  D ++L+
Sbjct: 611 KVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDL-RDKYKDVQVLK 669

Query: 160 RIV 162
            +V
Sbjct: 670 ILV 672

Homo sapiens (taxid: 9606)

>sp|Q5RBW9|TTC27_PONAB Tetratricopeptide repeat protein 27 OS=Pongo abelii GN=TTC27 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 1/120 (0%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           E ++ +N +    WF+LG A L   D + +   F R V L+P+N EAWN ++  ++   +
Sbjct: 551 ERSVKINPMQLGVWFSLGCAYLALEDYQGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQ 610

Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159
             +AF   +EALK     WQ+WENY   + DVG   +A++A   +L++  +K  D ++L+
Sbjct: 611 KVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDL-RDKYKDVQVLK 669

Pongo abelii (taxid: 9601)

>sp|O36033|YLM1_SCHPO TPR repeat-containing protein C19B12.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC19B12.01 PE=4 SV=2

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           RSL +  Y +G+   +      ++ +N L    WF  G AAL+ +  + A++ F+R + +
Sbjct: 525 RSLGKYYYKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSI 584

Query: 80  DPENGEAWNIIACLHM-IKNKSKE-AFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137
           +PE+GE+WN +A   +  K+ +KE A+ A ++ +K   + W++WENY  +++DV    + 
Sbjct: 585 NPEDGESWNNLASAMLKAKDHTKEQAWHAMQQGIKYMYDNWRIWENYMLISVDVNKWSEV 644

Query: 138 LEAVQMVLNITNN----KRIDTELLERIV 162
           + A++ ++ I       + +D + L+ +V
Sbjct: 645 IRALRRIIEIKGKDEGERAVDVQCLDLVV 673

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5F3K0|TTC27_CHICK Tetratricopeptide repeat protein 27 OS=Gallus gallus GN=TTC27 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           E ++ +N +    WF+LG A +     E A   F R V L+P+N EAWN ++  ++   +
Sbjct: 552 ERSVQINPMQLGVWFSLGCAYIALEGYEGAAKAFQRCVTLEPDNAEAWNNLSTAYIRLKQ 611

Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159
             +AF   +EALK     WQ+WENY   + DVG   +A++A   ++++   K  DT++L 
Sbjct: 612 KIKAFRTLQEALKCNYEHWQIWENYLLTSTDVGEFSEAIKAYHRLMDL-REKYKDTQVLA 670

Query: 160 RIV 162
            +V
Sbjct: 671 ILV 673

Gallus gallus (taxid: 9031)

>sp|P41842|YO91_CAEEL TPR repeat-containing protein T20B12.1 OS=Caenorhabditis elegans GN=T20B12.1 PE=4 SV=2

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 33  ETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC 92
           E  K LR + + L  +    WF  G  A K  + +++   + R V L P++ EAWN ++ 
Sbjct: 469 EAYKHLRRS-LELQPIQLGTWFNAGYCAWKLENFKESTQCYHRCVSLQPDHFEAWNNLSA 527

Query: 93  LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
            ++   +  +A+   +EALK       +WENY  +++DVG   QA++A   +L++ N + 
Sbjct: 528 AYIRHGQKPKAWKLLQEALKYNYEHPNVWENYMLLSVDVGEFSQAIQAYHRLLDM-NKRG 586

Query: 153 IDTELLERIVLNLEGRTSVIESD 175
            D E+LE I   L  R + I  D
Sbjct: 587 ADDEVLELIAQTLLRREAEISMD 609

Caenorhabditis elegans (taxid: 6239)

>sp|P42842|EMW1_YEAST Essential for maintenance of the cell wall protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMW1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 8/122 (6%)

Query: 49  YP---DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
           YP   + W+  G   L+   ++ A + FTR V LDP +  +W+ ++  +   +K KEA+ 
Sbjct: 633 YPLSFETWYFYGCVGLQCGKMQIAAEAFTRCVSLDPYHALSWSNLSAAYTKMDKLKEAYS 692

Query: 106 AFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK----RIDTELLER 160
             K A+    +  W++WENY  VA+ +      L A + +++I  +K     ID  ++E+
Sbjct: 693 CLKRAISCDAQKNWKIWENYMLVAVKLNEWEDVLTACKQLVSIRRDKSGEGSIDLPIIEK 752

Query: 161 IV 162
           +V
Sbjct: 753 LV 754

Required for the maintenance of the cell wall integrity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 57/107 (53%)

Query: 21  SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
           +LA     +G+ + + +  + A+ ++  + D +  +G    + +DV+ AL  +TRA+Q++
Sbjct: 356 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 415

Query: 81  PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127
           P   +A + +A +H       EA  +++ ALKLK +    + N +H 
Sbjct: 416 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 462

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
255571269	891	conserved hypothetical protein [Ricinus	0.827	0.226	0.679	2e-72
356507408	910	PREDICTED: tetratricopeptide repeat prot	0.848	0.227	0.676	3e-72
296084812	904	unnamed protein product [Vitis vinifera]	0.778	0.210	0.713	6e-72
359480921	909	PREDICTED: tetratricopeptide repeat prot	0.770	0.206	0.679	1e-71
224077388	718	predicted protein [Populus trichocarpa]	0.852	0.289	0.619	3e-67
449468426	897	PREDICTED: tetratricopeptide repeat prot	0.758	0.206	0.645	1e-66
449516270	482	PREDICTED: LOW QUALITY PROTEIN: tetratri	0.758	0.383	0.645	3e-66
297807747	892	tetratricopeptide repeat-containing prot	0.795	0.217	0.602	7e-64
15237943	899	tetratricopeptide repeat-containing prot	0.618	0.167	0.754	1e-62
145358569	877	prenylyltransferase-like protein [Arabid	0.713	0.198	0.623	1e-55

>gi|255571269|ref|XP_002526584.1| conserved hypothetical protein [Ricinus communis] gi|223534078|gb|EEF35796.1| conserved hypothetical protein [Ricinus communis]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 166/209 (79%), Gaps = 7/209 (3%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           RSLARSAY+RG+YETSK+L E+AMALNSLY DGWFALGAAALKARDVEKALD FTRAVQL
Sbjct: 556 RSLARSAYDRGDYETSKVLWESAMALNSLYRDGWFALGAAALKARDVEKALDGFTRAVQL 615

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DPENGEAWN IACLHMIK ++ EAFI+FKEALKLKR+ WQLWENYSHV +DVGN+ QALE
Sbjct: 616 DPENGEAWNNIACLHMIKKRNNEAFISFKEALKLKRDSWQLWENYSHVVMDVGNVRQALE 675

Query: 140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESV 199
           A+QMVL+IT+ K++D +LLERI+L +EGR S   S     T + NSTN TC  D    S 
Sbjct: 676 AIQMVLHITSCKQVDADLLERIMLEIEGRASSRHSIYLPATGDTNSTNQTCFDD----SQ 731

Query: 200 HVSSLEGSIMGRSQENEHLMEFLWKILQQ 228
           + S ++    G S+E E L+E   KILQQ
Sbjct: 732 NDSEVQA---GWSRETEQLVELFGKILQQ 757

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507408|ref|XP_003522459.1| PREDICTED: tetratricopeptide repeat protein 27 homolog [Glycine max]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 142/210 (67%), Positives = 162/210 (77%), Gaps = 3/210 (1%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           RSLARSAYNRG+YETSKIL E+AM++NS+YPDGWFALGAAALKARD+EKALD FTRAVQL
Sbjct: 579 RSLARSAYNRGDYETSKILWESAMSMNSMYPDGWFALGAAALKARDIEKALDAFTRAVQL 638

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DPENGEAWN IACLHMIK KSKEAFIAFKEALK KRN WQLWENYSHVA+D GNI QALE
Sbjct: 639 DPENGEAWNNIACLHMIKKKSKEAFIAFKEALKFKRNSWQLWENYSHVAVDTGNISQALE 698

Query: 140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESV 199
            VQM+L+++NNKR+D ELLERI   +E + S        T  N   T+  C  D    S 
Sbjct: 699 GVQMILDMSNNKRVDCELLERITREVEKKLSTSNVPQLVTDDNKPKTDQLCIVD--SGSK 756

Query: 200 HVSSLEG-SIMGRSQENEHLMEFLWKILQQ 228
           +   + G SI GRS+E E L+  L K+LQQ
Sbjct: 757 YQEQVSGVSIAGRSRETEQLLLLLGKVLQQ 786

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084812|emb|CBI27694.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 137/192 (71%), Positives = 156/192 (81%), Gaps = 2/192 (1%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           RSLARSAYNRG+YETSKIL E+AMALNSLYPDGWFALGAAALKARD+EKALD FTRAVQL
Sbjct: 594 RSLARSAYNRGDYETSKILWESAMALNSLYPDGWFALGAAALKARDIEKALDGFTRAVQL 653

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DP+NGEAWN IACLHMIK KSKE+FIAFKEALK KRN WQLWENYS VA DVGN GQALE
Sbjct: 654 DPQNGEAWNNIACLHMIKKKSKESFIAFKEALKFKRNSWQLWENYSQVAADVGNFGQALE 713

Query: 140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESV 199
           A+ MVL++TNNKRID+ELLERI L +E RTS     S    ++ N T +T   D +V  +
Sbjct: 714 AILMVLDLTNNKRIDSELLERITLEMEKRTSTRHPVSPEAANDDNCTKSTHPSDSNV--I 771

Query: 200 HVSSLEGSIMGR 211
           HV  + G ++ +
Sbjct: 772 HVVEMLGKVLQK 783

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480921|ref|XP_002268108.2| PREDICTED: tetratricopeptide repeat protein 27 homolog [Vitis vinifera]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 163/212 (76%), Gaps = 24/212 (11%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           RSLARSAYNRG+YETSKIL E+AMALNSLYPDGWFALGAAALKARD+EKALD FTRAVQL
Sbjct: 594 RSLARSAYNRGDYETSKILWESAMALNSLYPDGWFALGAAALKARDIEKALDGFTRAVQL 653

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DP+NGEAWN IACLHMIK KSKE+FIAFKEALK KRN WQLWENYS VA DVGN GQALE
Sbjct: 654 DPQNGEAWNNIACLHMIKKKSKESFIAFKEALKFKRNSWQLWENYSQVAADVGNFGQALE 713

Query: 140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVN---STNNTCAKDLHV 196
           A+ MVL++TNNKRID+ELLERI L +E RTS        T H V+   + ++ C K    
Sbjct: 714 AILMVLDLTNNKRIDSELLERITLEMEKRTS--------TRHPVSPEAANDDNCTKK--- 762

Query: 197 ESVHVSSLEGSIMGRSQENEHLMEFLWKILQQ 228
                     S +G S E E+L+E L K+LQ+
Sbjct: 763 ----------SRVGISWETENLVEMLGKVLQK 784

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077388|ref|XP_002305241.1| predicted protein [Populus trichocarpa] gi|222848205|gb|EEE85752.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 132/213 (61%), Positives = 162/213 (76%), Gaps = 5/213 (2%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           RSLARSAYNRG+YETSKI+ EAA+ALNSLYPDGWFALG+AALKARDV+KAL  FT+AVQ 
Sbjct: 391 RSLARSAYNRGDYETSKIMWEAALALNSLYPDGWFALGSAALKARDVDKALVGFTKAVQF 450

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DPENGEAWN IACLHMI+ +S+EAFIAF EALK KR+ WQ+W  YSHVALDVGN+ +ALE
Sbjct: 451 DPENGEAWNNIACLHMIRKRSEEAFIAFNEALKFKRDSWQMWAQYSHVALDVGNVHKALE 510

Query: 140 AVQMVLNITN----NKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLH 195
           AV+MVLNIT+     K ID ++LERI+L +E R S         + + + T   C  D H
Sbjct: 511 AVRMVLNITSGKATGKEIDADILERIMLEIEERISRRPFKPPSVSDDTSLTTQHCPDDSH 570

Query: 196 VESVHVSSLEGSIMGRSQENEHLMEFLWKILQQ 228
            +S++ S    ++ GRS+E E L++ L KILQQ
Sbjct: 571 NDSINKSEQRIAV-GRSRETEQLVDLLGKILQQ 602

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468426|ref|XP_004151922.1| PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis sativus]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 157/209 (75%), Gaps = 24/209 (11%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           RSLARSAYNRG+YETSK L E+AMALNS+YPDGWFALGAAALKARD++KALD FTRAVQL
Sbjct: 591 RSLARSAYNRGDYETSKTLWESAMALNSMYPDGWFALGAAALKARDIDKALDGFTRAVQL 650

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DPENGEAWN IACLHMIK K+KEAFIAFKEALK KRN WQLWENYSHVALD GNI QALE
Sbjct: 651 DPENGEAWNNIACLHMIKKKNKEAFIAFKEALKFKRNNWQLWENYSHVALDTGNIVQALE 710

Query: 140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESV 199
           AVQ V ++TNNKR+D ELLERI+  +E           R   N +S ++    DL VE  
Sbjct: 711 AVQQVTDMTNNKRVDAELLERIMQEVE-----------RRASNSHSESHHHEADLVVE-- 757

Query: 200 HVSSLEGSIMGRSQENEHLMEFLWKILQQ 228
                      +++E +H++E + K+L Q
Sbjct: 758 -----------KNRETDHMVELIGKVLHQ 775

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516270|ref|XP_004165170.1| PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 27 homolog, partial [Cucumis sativus]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 156/209 (74%), Gaps = 24/209 (11%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           RSLARSAYNRG+YETSK L E+AMALNS+YPDGWFALGAAALKARD++KALD FTRAVQL
Sbjct: 176 RSLARSAYNRGDYETSKTLWESAMALNSMYPDGWFALGAAALKARDIDKALDGFTRAVQL 235

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DPENGEAWN IACLHMIK K+KEAFIAFKEALK KRN WQLWENYSHVALD GNI QALE
Sbjct: 236 DPENGEAWNNIACLHMIKKKNKEAFIAFKEALKFKRNNWQLWENYSHVALDTGNIVQALE 295

Query: 140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESV 199
           AVQ V ++TNNKR+D ELLERI+  +E           R   N +S ++    DL VE  
Sbjct: 296 AVQQVTDMTNNKRVDAELLERIMQEVE-----------RRASNSHSESHHHEADLVVE-- 342

Query: 200 HVSSLEGSIMGRSQENEHLMEFLWKILQQ 228
                      + +E +H++E + K+L Q
Sbjct: 343 -----------KXRETDHMVELIGKVLHQ 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807747|ref|XP_002871757.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317594|gb|EFH48016.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 126/209 (60%), Positives = 152/209 (72%), Gaps = 15/209 (7%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           R+LARSAYNRG++E SK+L EAAMALNSLYPDGWFALGAAALKARDV+KALD FT AVQL
Sbjct: 572 RALARSAYNRGDFEKSKMLWEAAMALNSLYPDGWFALGAAALKARDVQKALDAFTFAVQL 631

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DP+NGEAWN IACLHMIK KSKE+FIAFKEALK KR+ WQ+WEN+SHVA+DVGN+ QA E
Sbjct: 632 DPDNGEAWNNIACLHMIKKKSKESFIAFKEALKFKRDSWQMWENFSHVAMDVGNLDQAFE 691

Query: 140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESV 199
           A+Q +L ++ NKRID  LL+RI+  LE R S  +S S        S     + D   E+ 
Sbjct: 692 AIQQILKMSKNKRIDVVLLDRIMTELENRNSACKSSS--------SIETEASSDESTETK 743

Query: 200 HVSSLEGSIMGRSQENEHLMEFLWKILQQ 228
             ++          E +  +E L KI+QQ
Sbjct: 744 PCTATPA-------ETQRHLELLGKIIQQ 765

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237943|ref|NP_197229.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|10177072|dbj|BAB10514.1| unnamed protein product [Arabidopsis thaliana] gi|332005024|gb|AED92407.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 132/151 (87%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           R+LARSAYNRG++E SK+L EAAMALNSLYPDGWFALGAAALKARDV+KALD FT AVQL
Sbjct: 578 RALARSAYNRGDFEKSKMLWEAAMALNSLYPDGWFALGAAALKARDVQKALDAFTFAVQL 637

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DP+NGEAWN IACLHMIK KSKE+FIAFKEALK KR+ WQ+WEN+SHVA+DVGNI QA E
Sbjct: 638 DPDNGEAWNNIACLHMIKKKSKESFIAFKEALKFKRDSWQMWENFSHVAMDVGNIDQAFE 697

Query: 140 AVQMVLNITNNKRIDTELLERIVLNLEGRTS 170
           A+Q +L ++ NKR+D  LL+RI+  LE R S
Sbjct: 698 AIQQILKMSKNKRVDVVLLDRIMTELEKRNS 728

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358569|ref|NP_198529.3| prenylyltransferase-like protein [Arabidopsis thaliana] gi|332006762|gb|AED94145.1| prenylyltransferase-like protein [Arabidopsis thaliana]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/178 (62%), Positives = 135/178 (75%), Gaps = 4/178 (2%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           R+LARSAYNRG++E SKIL EAAMALNSLY DGWFALGAAALKARD++KALD FT AV L
Sbjct: 570 RALARSAYNRGDFEKSKILWEAAMALNSLYSDGWFALGAAALKARDLQKALDAFTLAVHL 629

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DP+N  AWN IA LHMIK KSKE+FIAFKE LKL R+ WQ+WEN+SHVA+DVGN  QA E
Sbjct: 630 DPDNWLAWNNIASLHMIKKKSKESFIAFKEVLKLNRDSWQIWENFSHVAMDVGNTDQAFE 689

Query: 140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVE 197
           A+Q ++ +T NK I   LL+R++ +LE R    ES S    + +  T  T  + L++E
Sbjct: 690 AIQQIMRLTQNKSISVVLLDRLMTDLENRNISYESSS----NELIKTKPTTTERLYIE 743

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2167165	899	AT5G17270 [Arabidopsis thalian	0.831	0.225	0.608	8.8e-61
TAIR|locus:2166153	877	AT5G37130 [Arabidopsis thalian	0.713	0.198	0.623	2.5e-53
UNIPROTKB|Q6P3X3	843	TTC27 "Tetratricopeptide repea	0.659	0.190	0.319	5.4e-16
POMBASE|SPAC19B12.01	817	SPAC19B12.01 "TPR repeat prote	0.581	0.173	0.286	8.4e-16
RGD|1305264	847	Ttc27 "tetratricopeptide repea	0.495	0.142	0.362	1.1e-15
MGI|MGI:1921446	847	Ttc27 "tetratricopeptide repea	0.495	0.142	0.362	1.5e-15
WB|WBGene00020600	771	T20B12.1 [Caenorhabditis elega	0.577	0.182	0.307	7.7e-13
CGD|CAL0004331	916	orf19.5356 [Candida albicans (	0.651	0.173	0.266	1.4e-10
UNIPROTKB|Q5A5P4	916	CaO19.12816 "Putative uncharac	0.651	0.173	0.266	1.4e-10
SGD|S000005257	904	EMW1 "Essential conserved prot	0.467	0.126	0.286	8e-09

TAIR|locus:2167165 AT5G17270 [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 8.8e-61, P = 8.8e-61
 Identities = 126/207 (60%), Positives = 153/207 (73%)

Query:    20 RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
             R+LARSAYNRG++E SK+L EAAMALNSLYPDGWFALGAAALKARDV+KALD FT AVQL
Sbjct:   578 RALARSAYNRGDFEKSKMLWEAAMALNSLYPDGWFALGAAALKARDVQKALDAFTFAVQL 637

Query:    80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
             DP+NGEAWN IACLHMIK KSKE+FIAFKEALK KR+ WQ+WEN+SHVA+DVGNI QA E
Sbjct:   638 DPDNGEAWNNIACLHMIKKKSKESFIAFKEALKFKRDSWQMWENFSHVAMDVGNIDQAFE 697

Query:   140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHV--- 196
             A+Q +L ++ NKR+D  LL+RI+  LE R S  +S S  T    +S  +T  K       
Sbjct:   698 AIQQILKMSKNKRVDVVLLDRIMTELEKRNSACKSSSSSTETEASSDESTETKPCTATPA 757

Query:   197 ESVHVSSLEGSIMGRSQENEHLMEFLW 223
             E+     L G ++ +  + E   E +W
Sbjct:   758 ETQRQLELLGKVIQQIVKTESTAE-IW 783

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2166153 AT5G37130 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 2.5e-53, P = 2.5e-53
 Identities = 111/178 (62%), Positives = 135/178 (75%)

Query:    20 RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
             R+LARSAYNRG++E SKIL EAAMALNSLY DGWFALGAAALKARD++KALD FT AV L
Sbjct:   570 RALARSAYNRGDFEKSKILWEAAMALNSLYSDGWFALGAAALKARDLQKALDAFTLAVHL 629

Query:    80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
             DP+N  AWN IA LHMIK KSKE+FIAFKE LKL R+ WQ+WEN+SHVA+DVGN  QA E
Sbjct:   630 DPDNWLAWNNIASLHMIKKKSKESFIAFKEVLKLNRDSWQIWENFSHVAMDVGNTDQAFE 689

Query:   140 AVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVE 197
             A+Q ++ +T NK I   LL+R++ +LE R    ES S    + +  T  T  + L++E
Sbjct:   690 AIQQIMRLTQNKSISVVLLDRLMTDLENRNISYESSS----NELIKTKPTTTERLYIE 743

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048046 "apoplast" evidence=IDA

UNIPROTKB|Q6P3X3 TTC27 "Tetratricopeptide repeat protein 27" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 5.4e-16, P = 5.4e-16
 Identities = 53/166 (31%), Positives = 86/166 (51%)

Query:     7 KLWKFQMI-SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARD 65
             K W+     S    RS A       E++      E ++ +N +    WF+LG A L   D
Sbjct:   517 KAWELSRYRSARAQRSKALLHLRNKEFQECVECFERSVKINPMQLGVWFSLGCAYLALED 576

Query:    66 VEKALDVFTRAVQLDPENGEAWNIIACLHM-IKNKSKEAFIAFKEALKLKRNGWQLWENY 124
              + +   F R V L+P+N EAWN ++  ++ +K K K AF   +EALK     WQ+WENY
Sbjct:   577 YQGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQKVK-AFRTLQEALKCNYEHWQIWENY 635

Query:   125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN-LEGRT 169
                + DVG   +A++A   +L++  +K  D ++L+ +V   ++G T
Sbjct:   636 ILTSTDVGEFSEAIKAYHRLLDL-RDKYKDVQVLKILVRAVIDGMT 680

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC19B12.01 SPAC19B12.01 "TPR repeat protein, TTC27 family" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 209 (78.6 bits), Expect = 8.4e-16, P = 8.4e-16
 Identities = 43/150 (28%), Positives = 86/150 (57%)

Query:    20 RSLARSAYNRGEYETSKILREAAMALNSL-YPDGWFALGAAALKARDVEKALDVFTRAVQ 78
             RSL +  Y +G+   +      ++ +N L YP  WF  G AAL+ +  + A++ F+R + 
Sbjct:   525 RSLGKYYYKKGDLLQAMNCFNESLKINPLSYPT-WFTYGCAALELQKYDAAMEAFSRCLS 583

Query:    79 LDPENGEAWNIIACLHM-IKNKSKE-AFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136
             ++PE+GE+WN +A   +  K+ +KE A+ A ++ +K   + W++WENY  +++DV    +
Sbjct:   584 INPEDGESWNNLASAMLKAKDHTKEQAWHAMQQGIKYMYDNWRIWENYMLISVDVNKWSE 643

Query:   137 ALEAVQMVLNITNN----KRIDTELLERIV 162
              + A++ ++ I       + +D + L+ +V
Sbjct:   644 VIRALRRIIEIKGKDEGERAVDVQCLDLVV 673

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=NAS

RGD|1305264 Ttc27 "tetratricopeptide repeat domain 27" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 45/124 (36%), Positives = 72/124 (58%)

Query:    40 EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM-IKN 98
             E ++ +N +    WF+LG A L   D   +   F R V L+P+N EAWN ++  ++ +K 
Sbjct:   555 ERSVKINPMQLGVWFSLGCAYLALEDYGGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQ 614

Query:    99 KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158
             K K AF   +EALK     WQ+WENY   + DVG  G+A++A   +L++  +K  D ++L
Sbjct:   615 KVK-AFRTLQEALKCNYEHWQIWENYILTSTDVGEFGEAIKAYHRLLDL-RDKYKDVQVL 672

Query:   159 ERIV 162
             + +V
Sbjct:   673 KILV 676

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1921446 Ttc27 "tetratricopeptide repeat domain 27" [Mus musculus (taxid:10090)]

 Score = 207 (77.9 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 45/124 (36%), Positives = 72/124 (58%)

Query:    40 EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM-IKN 98
             E ++ +N +    WF+LG A L   D   +   F R V L+P+N EAWN ++  ++ +K 
Sbjct:   555 ERSVKINPMQLGVWFSLGCAYLALEDYGGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQ 614

Query:    99 KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL 158
             K K AF   +EALK     WQ+WENY   + DVG  G+A++A   +L++  +K  D ++L
Sbjct:   615 KVK-AFRTLQEALKCNYEHWQIWENYILTSTDVGEFGEAIKAYHRLLDL-RDKYKDIQVL 672

Query:   159 ERIV 162
             + +V
Sbjct:   673 KILV 676

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00020600 T20B12.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 181 (68.8 bits), Expect = 7.7e-13, P = 7.7e-13
 Identities = 44/143 (30%), Positives = 74/143 (51%)

Query:    33 ETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC 92
             E  K LR + + L  +    WF  G  A K  + +++   + R V L P++ EAWN ++ 
Sbjct:   469 EAYKHLRRS-LELQPIQLGTWFNAGYCAWKLENFKESTQCYHRCVSLQPDHFEAWNNLSA 527

Query:    93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
              ++   +  +A+   +EALK       +WENY  +++DVG   QA++A   +L++ N + 
Sbjct:   528 AYIRHGQKPKAWKLLQEALKYNYEHPNVWENYMLLSVDVGEFSQAIQAYHRLLDM-NKRG 586

Query:   153 IDTELLERIVLNLEGRTSVIESD 175
              D E+LE I   L  R + I  D
Sbjct:   587 ADDEVLELIAQTLLRREAEISMD 609

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

CGD|CAL0004331 orf19.5356 [Candida albicans (taxid:5476)]

 Score = 171 (65.3 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 45/169 (26%), Positives = 85/169 (50%)

Query:     3 PAM-KKLWKFQMISQLELRSLARSAYNRGEYETSKILREA--AMALNSLYPDGWFALGAA 59
             P++ +K W+    ++ +  SL+   Y+    +    ++     + +N L  + W+  G  
Sbjct:   597 PSLWEKAWEVGHYAKAKA-SLSHYYYSPPRKDIDLAIKHMFDCLTVNPLSYENWYFYGCC 655

Query:    60 ALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL---KRN 116
              L++   E A + FTR V LD  N  AW+ +A   +  +K+K AF A K+A++     R 
Sbjct:   656 GLESGQFELASEAFTRCVSLDDSNSYAWSNLASALLKLDKTKPAFNALKKAIRSGGESRK 715

Query:   117 GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK---RIDTELLERIV 162
              W+++ENY +VA  +      L+  + ++ I  N+    ID  +LE++V
Sbjct:   716 SWRIYENYVNVAAKLHEWNDVLQGCRELIEIRKNEGDTAIDIPVLEKLV 764

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031505 "fungal-type cell wall organization" evidence=IEA

UNIPROTKB|Q5A5P4 CaO19.12816 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 171 (65.3 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 45/169 (26%), Positives = 85/169 (50%)

Query:     3 PAM-KKLWKFQMISQLELRSLARSAYNRGEYETSKILREA--AMALNSLYPDGWFALGAA 59
             P++ +K W+    ++ +  SL+   Y+    +    ++     + +N L  + W+  G  
Sbjct:   597 PSLWEKAWEVGHYAKAKA-SLSHYYYSPPRKDIDLAIKHMFDCLTVNPLSYENWYFYGCC 655

Query:    60 ALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL---KRN 116
              L++   E A + FTR V LD  N  AW+ +A   +  +K+K AF A K+A++     R 
Sbjct:   656 GLESGQFELASEAFTRCVSLDDSNSYAWSNLASALLKLDKTKPAFNALKKAIRSGGESRK 715

Query:   117 GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK---RIDTELLERIV 162
              W+++ENY +VA  +      L+  + ++ I  N+    ID  +LE++V
Sbjct:   716 SWRIYENYVNVAAKLHEWNDVLQGCRELIEIRKNEGDTAIDIPVLEKLV 764

GO:0003674 "molecular_function" evidence=ND

SGD|S000005257 EMW1 "Essential conserved protein with a role in cell wall integrity" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 158 (60.7 bits), Expect = 8.0e-09, P = 8.0e-09
 Identities = 35/122 (28%), Positives = 64/122 (52%)

Query:    49 YP---DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
             YP   + W+  G   L+   ++ A + FTR V LDP +  +W+ ++  +   +K KEA+ 
Sbjct:   633 YPLSFETWYFYGCVGLQCGKMQIAAEAFTRCVSLDPYHALSWSNLSAAYTKMDKLKEAYS 692

Query:   106 AFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR----IDTELLER 160
               K A+    +  W++WENY  VA+ +      L A + +++I  +K     ID  ++E+
Sbjct:   693 CLKRAISCDAQKNWKIWENYMLVAVKLNEWEDVLTACKQLVSIRRDKSGEGSIDLPIIEK 752

Query:   161 IV 162
             +V
Sbjct:   753 LV 754

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-11
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-09
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	4e-06
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	6e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-06
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	3e-05
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	3e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	4e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	5e-04
COG4976	287	COG4976, COG4976, Predicted methyltransferase (con	6e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	7e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	0.002
pfam13428	44	pfam13428, TPR_14, Tetratricopeptide repeat	0.002
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 26/95 (27%), Positives = 50/95 (52%)

Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
              LG    K  D ++AL+ + +A++LDP+N +A+  +A  +    K +EA   +++AL+
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
           L  +  + + N       +G   +ALEA +  L +
Sbjct: 63  LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 30/99 (30%), Positives = 54/99 (54%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
            L +L    Y  G+Y+ +    E A+ L+    D ++ L AA  K    E+AL+ + +A+
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
           +LDP+N +A+  +   +    K +EA  A+++AL+L  N
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.8 bits (122), Expect = 7e-09
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA-CLHMIKNKSKEAFIAFKEAL 111
              LG A  K  D ++A++ + +A++LDP+N EA+  +A     +    +EA    ++AL
Sbjct: 6   LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65

Query: 112 KL 113
           +L
Sbjct: 66  EL 67

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 54  FALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113
            AL  AAL+A D ++AL     A+   P   EA  ++    + + +  EA    + AL  
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Length = 65

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA-RDVEKALDVFTR 75
            L++L  + +  G+Y+ +    E A+ L+    + ++ L  A LK  +D E+AL+   +
Sbjct: 4  EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 76 AVQLDP 81
          A++LDP
Sbjct: 64 ALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 22  LARSAYNRGEYETSK---ILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           LA + Y  G+ +  K   IL EAA       P+ W  LG A L A D+ KA+  F + + 
Sbjct: 571 LALAQYYLGKGQLKKALAILNEAA-DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120
           L P++  A  ++A  + +     +A  + K AL+LK +  + 
Sbjct: 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
          +LAR+A   G+Y+ +    EAA+A   L  +    LG A L+   + +A  +   A+  D
Sbjct: 2  ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 81 PEN 83
          P++
Sbjct: 62 PDD 64

Length = 65

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 14  ISQLELRSLARSAYN---RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKAL 70
           +   +L  +   AYN   +G Y+ +  L +   A +      W  L A     ++ E+A+
Sbjct: 12  LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAI 71

Query: 71  DVFTRAVQLDPENGEA-WNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
           D +  A  LDP++    ++   CL  +    + A  A   A+++   
Sbjct: 72  DAYALAAALDPDDPRPYFHAAECLLALGEP-ESALKALDLAIEICGE 117

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 2/135 (1%)

Query: 17  LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
           L LR LA      G+ E ++   E A+A++         L   AL     ++A  +    
Sbjct: 128 LALRGLA--YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185

Query: 77  VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136
           +  DP N +A  +   L +     + A  A+++A+ L+ N   +    + + ++ G   +
Sbjct: 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245

Query: 137 ALEAVQMVLNITNNK 151
           A +    +L    N 
Sbjct: 246 AEKHADALLKKAPNS 260

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 19/158 (12%)

Query: 17  LELRSLARSAYNRGE-YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR 75
           L +  LA + Y RG+   +  +L+++A+A      +   A G   ++  +  +A+ V  +
Sbjct: 67  LSIAKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRK 125

Query: 76  AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135
           A +L P + EAWN++        +  EA  A+++AL+L  N                N+G
Sbjct: 126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE----------PSIANNLG 175

Query: 136 QALEAVQMVLNITNNKRIDTELLERIVLNLEGRTSVIE 173
                  M L +  +      LL    L+    + V +
Sbjct: 176 -------MSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206

Length = 257

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 39.4 bits (93), Expect = 3e-05
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83
           +  + LG A  K  D E+AL+ + +A++LDP N
Sbjct: 1  AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 4/138 (2%)

Query: 27  YNRGEYETSKILREAAMALN---SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83
           Y  G+YE +  L E A+ L+   +   +   ALGA        E+AL++  +A++L+P++
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 84  -GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ 142
             EA   +  L++   K +EA   +++AL+L  +  +   N + + L++G   +ALEA++
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260

Query: 143 MVLNITNNKRIDTELLER 160
             L +  +       L  
Sbjct: 261 KALELDPDLYNLGLALLL 278

Length = 291

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA     +G+ E +K   + A+  +      + AL     +  ++EKA D F RA+ L+P
Sbjct: 37  LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG--WQLWENYSHVALDVGNIGQALE 139
            NG+  N        + K ++A   F++A++        +  EN    AL  G+  +A +
Sbjct: 97  NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156

Query: 140 AVQMVLNI 147
            +   L I
Sbjct: 157 YLTRALQI 164

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 26/99 (26%), Positives = 38/99 (38%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
            R LA      G  + +      A+ L+   P     LG A L   D EKA +   +A +
Sbjct: 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE 391

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117
           LDPEN  A   +    + +    EA    + A +L    
Sbjct: 392 LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 14/66 (21%), Positives = 28/66 (42%)

Query: 85  EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144
           EA   +  L+       EA   +++AL+L  +    + N +     +G   +ALE  +  
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 145 LNITNN 150
           L +  +
Sbjct: 61  LELDPD 66

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 35/70 (50%)

Query: 55  ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
            L    L+  D+E A +   +A++ DP++  A+  +A  +    + ++A  +F+ AL L 
Sbjct: 36  QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95

Query: 115 RNGWQLWENY 124
            N   +  NY
Sbjct: 96  PNNGDVLNNY 105

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 2/132 (1%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA     +G+Y  +K   E A+  +  Y            K  + + A + + +A+ L P
Sbjct: 41  LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP 100

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ--LWENYSHVALDVGNIGQALE 139
            NG+  N        + + +EA   F+ AL     G      EN    AL  G   QA E
Sbjct: 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160

Query: 140 AVQMVLNITNNK 151
            ++  L +    
Sbjct: 161 YLKRALELDPQF 172

Length = 250

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 3/127 (2%)

Query: 19  LRSLARSAYNRGEYETS---KILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR 75
                  A  R +YE     +     A           +        A   ++AL +   
Sbjct: 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQP 331

Query: 76  AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135
            +   P+N     +   + +  NK+KEA    K+AL L  N   L  N +   L  G   
Sbjct: 332 LIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391

Query: 136 QALEAVQ 142
           +A+  + 
Sbjct: 392 EAIRILN 398

Length = 484

>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only]

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE 82
          A      G+ E +  L   A+ L   +  GWF LG    KA + + A   +   ++LDPE
Sbjct: 2  AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61

Query: 83 N 83
          +
Sbjct: 62 D 62

Length = 287

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83
              + LG A LK    ++AL+ + +A++L+P N
Sbjct: 1  AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           E A  L+         L  + L++   +KAL    +  +  P+N    N++  +++ K  
Sbjct: 421 ETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD 480

Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT-NNKRIDTELL 158
             +A  AF++AL ++ + +    N + + +  GN   A++  + VL I   N R    L 
Sbjct: 481 LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540

Query: 159 ERIVLNLEGRTS 170
              +    G   
Sbjct: 541 G--LYLRTGNEE 550

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 18  ELRSLARSAYNRGEYETS-KILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
            L +L       G YE + ++L +A         +    LG   LK    E+AL+ + +A
Sbjct: 169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228

Query: 77  VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120
           ++LDP+N EA   +A L +   + +EA  A ++AL+L  + + L
Sbjct: 229 LELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNL 272

Length = 291

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           E  +  N    +GW  LG A +       AL  +  A++L  +N E    +A     +  
Sbjct: 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG 205

Query: 100 SK---EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE 156
            +   +A    ++AL L     +     +  A + G+  +A  A QM+L++         
Sbjct: 206 QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265

Query: 157 LLERI 161
           L+ER 
Sbjct: 266 LIERS 270

Length = 287

>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW 87
          P    AL  A L   D+++AL +  RA+ LDP++ EA 
Sbjct: 1  PAALLALARALLALGDLDEALALLRRALALDPDDPEAL 38

Length = 44

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 34.3 bits (80), Expect = 0.003
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN 83
           +  + LG A LK  D ++AL+ + +A++LDP N
Sbjct: 1  AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 25/154 (16%), Positives = 58/154 (37%), Gaps = 2/154 (1%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           L      +G+   ++   E A+++   +      L    ++  + + A+  F + + +DP
Sbjct: 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE-A 140
           +N  A   +A L++     +EA    ++A +L     +     +   L  G + +AL   
Sbjct: 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590

Query: 141 VQMVLNITNNKRIDTELLERIVLNLEGRTSVIES 174
            +      ++      +L R  L        + S
Sbjct: 591 NEAADAAPDSPEA-WLMLGRAQLAAGDLNKAVSS 623

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 14/115 (12%)

Query: 36  KILREAAMALNSLY---PDG-WF--ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI 89
               EA   L  L    PD  ++    G   L+A   ++A++   +A+ LDP +      
Sbjct: 320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLN 379

Query: 90  IACLHMIKNKSKEAFIAFKEALK---LKRNGWQ-LWENYSHVALDVGNIGQALEA 140
           +A   +   K +EA       L       NGW  L + Y+    ++GN  +AL A
Sbjct: 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA----ELGNRAEALLA 430

Length = 484

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
KOG1126	638	consensus DNA-binding cell division cycle control	99.88
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.87
KOG1126	638	consensus DNA-binding cell division cycle control	99.86
PRK12370	553	invasion protein regulator; Provisional	99.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.86
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.85
PRK15359	144	type III secretion system chaperone protein SscB;	99.85
PRK12370	553	invasion protein regulator; Provisional	99.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.85
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.84
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.83
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.82
PRK11189	296	lipoprotein NlpI; Provisional	99.82
PRK15359	144	type III secretion system chaperone protein SscB;	99.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
PRK11189	296	lipoprotein NlpI; Provisional	99.8
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.8
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.78
KOG1125	579	consensus TPR repeat-containing protein [General f	99.78
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.77
PLN02789	320	farnesyltranstransferase	99.77
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.77
KOG1125	579	consensus TPR repeat-containing protein [General f	99.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.77
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.77
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.76
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.76
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.76
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.75
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.75
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.75
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.74
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.74
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.72
PLN02789	320	farnesyltranstransferase	99.71
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.7
KOG0553	304	consensus TPR repeat-containing protein [General f	99.7
KOG0553	304	consensus TPR repeat-containing protein [General f	99.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.68
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.67
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.67
KOG1129	478	consensus TPR repeat-containing protein [General f	99.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.66
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.66
KOG1129	478	consensus TPR repeat-containing protein [General f	99.66
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.61
PRK14574	822	hmsH outer membrane protein; Provisional	99.61
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.61
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.58
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.58
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.57
KOG2076	895	consensus RNA polymerase III transcription factor	99.57
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.57
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.56
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.56
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.55
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.55
KOG2003	840	consensus TPR repeat-containing protein [General f	99.55
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.54
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.53
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.53
PRK14574	822	hmsH outer membrane protein; Provisional	99.52
KOG2076	895	consensus RNA polymerase III transcription factor	99.52
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.52
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.5
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.5
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.49
KOG2003	840	consensus TPR repeat-containing protein [General f	99.49
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.48
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.48
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.48
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.48
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.47
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.46
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.46
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.46
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.46
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.45
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.45
PRK15331	165	chaperone protein SicA; Provisional	99.45
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.44
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.43
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.43
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.43
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.43
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.43
PRK11906	458	transcriptional regulator; Provisional	99.43
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.43
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.43
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.42
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.4
PRK15331	165	chaperone protein SicA; Provisional	99.4
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.4
PRK11906	458	transcriptional regulator; Provisional	99.39
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.39
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.38
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.38
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.37
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.36
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.36
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.35
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.34
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.34
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.34
PRK10803	263	tol-pal system protein YbgF; Provisional	99.33
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.33
PRK10803	263	tol-pal system protein YbgF; Provisional	99.32
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.3
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.3
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.29
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.27
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.26
PF12688	120	TPR_5: Tetratrico peptide repeat	99.24
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.23
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.23
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.19
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.17
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.17
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.17
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.17
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.16
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.15
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.14
PF13371	73	TPR_9: Tetratricopeptide repeat	99.13
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.13
PF12688	120	TPR_5: Tetratrico peptide repeat	99.13
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.12
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.12
PF13371	73	TPR_9: Tetratricopeptide repeat	99.1
KOG4234	271	consensus TPR repeat-containing protein [General f	99.09
PF13512	142	TPR_18: Tetratricopeptide repeat	99.07
KOG4234	271	consensus TPR repeat-containing protein [General f	99.05
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.04
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.04
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.02
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.02
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.01
PF13512	142	TPR_18: Tetratricopeptide repeat	99.01
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.99
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.98
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.97
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.97
PLN03218	1060	maturation of RBCL 1; Provisional	98.96
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.96
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.95
PLN03218	1060	maturation of RBCL 1; Provisional	98.94
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.94
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.93
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.92
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.91
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.88
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.86
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.85
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.84
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.84
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.82
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.82
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.82
PLN03077	857	Protein ECB2; Provisional	98.81
KOG4555	175	consensus TPR repeat-containing protein [Function	98.8
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.8
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.8
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.79
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.78
PLN03077	857	Protein ECB2; Provisional	98.78
KOG4555	175	consensus TPR repeat-containing protein [Function	98.78
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.76
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.75
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.72
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.71
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.7
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.66
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.65
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.64
PF13428	44	TPR_14: Tetratricopeptide repeat	98.63
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.62
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.59
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.59
PF13428	44	TPR_14: Tetratricopeptide repeat	98.59
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.57
PF13431	34	TPR_17: Tetratricopeptide repeat	98.56
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.54
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.5
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.48
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.47
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.45
PRK04841	903	transcriptional regulator MalT; Provisional	98.44
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.43
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.43
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.42
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.42
PF13431	34	TPR_17: Tetratricopeptide repeat	98.41
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.39
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.36
KOG1586	288	consensus Protein required for fusion of vesicles	98.34
PRK04841	903	transcriptional regulator MalT; Provisional	98.3
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.27
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.26
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.24
KOG2471	696	consensus TPR repeat-containing protein [General f	98.24
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.24
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.23
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.23
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.22
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.22
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.21
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.21
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.2
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.15
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.12
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.09
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.09
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.08
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.07
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.07
KOG1586	288	consensus Protein required for fusion of vesicles	98.02
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	98.01
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.98
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.94
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.89
KOG1585	308	consensus Protein required for fusion of vesicles	97.87
KOG2471	696	consensus TPR repeat-containing protein [General f	97.87
KOG1585	308	consensus Protein required for fusion of vesicles	97.84
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.83
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.81
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.8
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.77
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.74
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.72
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.62
PRK10941	269	hypothetical protein; Provisional	97.61
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.59
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.58
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.56
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.56
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.55
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.55
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.54
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.54
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.53
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.52
PRK10941	269	hypothetical protein; Provisional	97.51
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.49
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.49
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.47
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.47
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.43
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.34
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.31
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.3
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.28
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.27
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.22
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.21
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.2
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.07
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.07
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.03
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.02
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.99
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.96
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.95
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.93
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.92
KOG1310	758	consensus WD40 repeat protein [General function pr	96.89
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.85
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.81
KOG2422	665	consensus Uncharacterized conserved protein [Funct	96.74
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.71
KOG3364	149	consensus Membrane protein involved in organellar	96.7
KOG1258	577	consensus mRNA processing protein [RNA processing	96.69
KOG3364	149	consensus Membrane protein involved in organellar	96.68
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.66
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.65
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.64
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.56
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.55
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.55
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.55
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.53
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.48
KOG1310	758	consensus WD40 repeat protein [General function pr	96.41
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.4
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.18
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.17
COG2912	269	Uncharacterized conserved protein [Function unknow	96.16
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.08
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.02
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.98
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.89
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.86
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.85
KOG1258	577	consensus mRNA processing protein [RNA processing	95.8
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.78
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.76
COG2912	269	Uncharacterized conserved protein [Function unknow	95.69
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.57
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.52
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.52
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.41
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	95.36
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.27
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.22
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.15
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.05
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.0
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.91
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.76
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.73
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.68
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.66
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.59
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.59
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.54
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.48
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.46
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.46
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.38
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	94.24
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.24
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.21
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	94.01
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.92
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.91
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.88
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.87
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.73
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.73
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.67
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.6
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.42
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.33
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.28
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.28
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.15
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	93.02
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.99
COG3947	361	Response regulator containing CheY-like receiver a	92.91
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.88
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.55
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.53
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	92.44
COG3947	361	Response regulator containing CheY-like receiver a	92.38
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.33
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	92.26
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.91
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	91.77
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.75
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.43
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	91.38
PF12854	34	PPR_1: PPR repeat	91.21
PF12854	34	PPR_1: PPR repeat	90.81
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.58
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.16
KOG3783	546	consensus Uncharacterized conserved protein [Funct	90.11
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	89.37
PF13041	50	PPR_2: PPR repeat family	89.28
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	89.16
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.04
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.89
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	88.69
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.68
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	88.67
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	88.56
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.42
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	88.32
KOG2422	665	consensus Uncharacterized conserved protein [Funct	87.92
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	87.24
PHA02537	230	M terminase endonuclease subunit; Provisional	86.55
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	86.36
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.3
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.98
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	85.77
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	85.7
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	85.69
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	85.6
PF13041	50	PPR_2: PPR repeat family	85.59
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	85.5
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	85.46
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.16
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	84.35
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	83.92
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	83.89
COG1747	711	Uncharacterized N-terminal domain of the transcrip	82.01
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	81.59
KOG4014	248	consensus Uncharacterized conserved protein (conta	81.16
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	80.94
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	80.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	80.39
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	80.38

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=3e-23  Score=166.56  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=116.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      ||..|++++++.|+.+.++.++|+.+-..|+..+|..+|.+++.+.|+++.+..+||.++...|.+++|...|.+++...
T Consensus       305 AI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~  384 (966)
T KOG4626|consen  305 AIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF  384 (966)
T ss_pred             HHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence            56677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      |....++.++|.++..+|++++|+.+|++++++.|....++.++|..|..+|+...|+++|.+++.++|....+...+.
T Consensus       385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa  463 (966)
T KOG4626|consen  385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA  463 (966)
T ss_pred             hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence            7777777777777777777777777777777777777777777777777777777777777777777776444443333

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=1e-23  Score=169.24  Aligned_cols=150  Identities=17%  Similarity=0.138  Sum_probs=77.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      ||..|++|++++|+...+|++||.+|...+.++.|+.+|.+++...|+++.++.++|.+|..+|..+-|+.+|++++...
T Consensus       237 aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~  316 (966)
T KOG4626|consen  237 AIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ  316 (966)
T ss_pred             HHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence            45666777777777777777777766666666555555555555555544444444444444444444444444444444


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      |+.++++.++|.++...|+..+|+.+|.+++.+.|+.+.+..++|.++..+|.+++|...|.++++..|.
T Consensus       317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~  386 (966)
T KOG4626|consen  317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE  386 (966)
T ss_pred             CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh
Confidence            4444444444444444444444444444444444444444444444444444444444444444444443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=6.4e-22  Score=159.86  Aligned_cols=167  Identities=16%  Similarity=0.235  Sum_probs=110.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      ||++|++|+++||+.+.+|..+|..+....++|+|..+|+.++..+|.+-.+|+.+|.+|.+.++++.|.-.|++|+.++
T Consensus       440 Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN  519 (638)
T KOG1126|consen  440 AIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN  519 (638)
T ss_pred             HHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC
Confidence            45666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |.+......+|.++.+.|+.++|+..+++|+.++|.++...+..|.++...+++++|+..+++.-++.|+.......+++
T Consensus       520 P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgk  599 (638)
T KOG1126|consen  520 PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGK  599 (638)
T ss_pred             ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhcc
Q 039523          161 IVLNLEG  167 (244)
Q Consensus       161 ~~~~~~~  167 (244)
                      ....+..
T Consensus       600 i~k~~~~  606 (638)
T KOG1126|consen  600 IYKRLGN  606 (638)
T ss_pred             HHHHHcc
Confidence            5555553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.87  E-value=1.6e-20  Score=160.35  Aligned_cols=150  Identities=13%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+...++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+.+|++++.++
T Consensus       350 A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~  429 (615)
T TIGR00990       350 ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD  429 (615)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            45566666766777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      |++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|+
T Consensus       430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE  499 (615)
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence            7777777777777777777777777777777777777777777777777777777777777777776665

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.87  E-value=4.5e-20  Score=157.61  Aligned_cols=164  Identities=14%  Similarity=0.144  Sum_probs=151.7

Q ss_pred             CchHHHHHHhh---ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKF---QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         1 Ai~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      |++.|+++++.   +|....++..+|.++..+|++++|+..+++++..+|.+...+..+|.++...|++++|+..+++++
T Consensus       313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al  392 (615)
T TIGR00990       313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL  392 (615)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45678888875   478889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHH
Q 039523           78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTEL  157 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  157 (244)
                      ..+|+++.+++.+|.++...|++++|+..|++++.++|++...+.++|.++..+|++++|+..++++++..|+.+.....
T Consensus       393 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~  472 (615)
T TIGR00990       393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY  472 (615)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997765555


Q ss_pred             HHHHHHH
Q 039523          158 LERIVLN  164 (244)
Q Consensus       158 l~~~~~~  164 (244)
                      +..+...
T Consensus       473 lg~~~~~  479 (615)
T TIGR00990       473 YGELLLD  479 (615)
T ss_pred             HHHHHHH
Confidence            5544443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=5.7e-21  Score=154.42  Aligned_cols=150  Identities=15%  Similarity=0.227  Sum_probs=144.2

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH
Q 039523            6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGE   85 (244)
Q Consensus         6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~   85 (244)
                      +..+..+|+.|+.|..+|++|..+++++.|+++|+++++++|....++..+|.=+....++|+|..+|++++..+|.+..
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn  490 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN  490 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence            45667799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT  155 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  155 (244)
                      +|+.+|.+|.++++++.|.-+|++|+.++|.+......+|.++...|+.++|+..+++|+.++|.++...
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~  560 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK  560 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999966443

>PRK12370 invasion protein regulator; Provisional

Probab=99.86  E-value=9e-20  Score=153.47  Aligned_cols=162  Identities=14%  Similarity=0.041  Sum_probs=143.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNR---------GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALD   71 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   71 (244)
                      |+.+|+++++.+|+++.++..+|.++...         +++++|+..++++++.+|+++.++..+|.++...|++++|+.
T Consensus       280 A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~  359 (553)
T PRK12370        280 ALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSL  359 (553)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence            57889999999999999999999887643         448999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CC
Q 039523           72 VFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT-NN  150 (244)
Q Consensus        72 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~  150 (244)
                      .|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..++++++.. |+
T Consensus       360 ~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~  439 (553)
T PRK12370        360 LFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD  439 (553)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999988777777777888999999999999999875 66


Q ss_pred             chhhHHHHHHHH
Q 039523          151 KRIDTELLERIV  162 (244)
Q Consensus       151 ~~~~~~~l~~~~  162 (244)
                      .+.....+....
T Consensus       440 ~~~~~~~la~~l  451 (553)
T PRK12370        440 NPILLSMQVMFL  451 (553)
T ss_pred             CHHHHHHHHHHH
Confidence            554444444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.86  E-value=1.1e-19  Score=129.91  Aligned_cols=144  Identities=22%  Similarity=0.210  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      ..+...||..|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+++++.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523           96 IKNKSKEAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      .+|++++|...|++++..  .|..+..+.++|.|..+.|+++.|..+|+++++++|+.+.....+.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a  180 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELA  180 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence            999999999999999985  3456789999999999999999999999999999999665444333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=5.9e-20  Score=143.10  Aligned_cols=147  Identities=15%  Similarity=0.163  Sum_probs=130.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|++|++++|....+|..+|..|..+++-..|+..|++|++++|.+-.+|+.+|..|.-++-..=|+-+|++++...
T Consensus       349 Av~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k  428 (559)
T KOG1155|consen  349 AVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK  428 (559)
T ss_pred             HHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence            56788899999999999999999999999999999999999999999888999999999988888888899999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      |+++..|..+|.||.+.++.++|+++|.+++.....+..++..+|.+|.+.++.++|..+|++.++.
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888888888888999999999999999988888874

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.85  E-value=6e-20  Score=127.63  Aligned_cols=125  Identities=14%  Similarity=0.132  Sum_probs=99.2

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      .+|+++++++|++   +..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4677788877764   5567888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523           83 NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD  130 (244)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  130 (244)
                      ++.+++++|.++...|++++|+..|++++...|+++..+.+.+.+...
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888777777766544

>PRK12370 invasion protein regulator; Provisional

Probab=99.85  E-value=1.8e-19  Score=151.61  Aligned_cols=159  Identities=16%  Similarity=0.063  Sum_probs=145.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..++++++++|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++
T Consensus       323 A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~  402 (553)
T PRK12370        323 AKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD  402 (553)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      |.++..+..++.++...|++++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|........+.
T Consensus       403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~  482 (553)
T PRK12370        403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY  482 (553)
T ss_pred             CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            9998887777778888999999999999999875 788999999999999999999999999998888777554444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.85  E-value=2.7e-19  Score=128.00  Aligned_cols=167  Identities=16%  Similarity=0.042  Sum_probs=150.0

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL-   79 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-   79 (244)
                      |...+++||+.+|++..+|..+|..|...|+.+.|.+.|+++++++|++..++.+.|..+...|++++|...|++++.. 
T Consensus        54 A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P  133 (250)
T COG3063          54 AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP  133 (250)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence            3467899999999999999999999999999999999999999999999999999999999999999999999999974 


Q ss_pred             -CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523           80 -DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus        80 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                       .|..+..+-++|.|..+.|+.+.|..+|+++++.+|+.+.....++..+...|++-.|..++++.....+-....+-..
T Consensus       134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~  213 (250)
T COG3063         134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLG  213 (250)
T ss_pred             CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHH
Confidence             4567789999999999999999999999999999999999999999999999999999999999887766544444444


Q ss_pred             HHHHHHhcc
Q 039523          159 ERIVLNLEG  167 (244)
Q Consensus       159 ~~~~~~~~~  167 (244)
                      -++...+.+
T Consensus       214 iriak~~gd  222 (250)
T COG3063         214 IRIAKRLGD  222 (250)
T ss_pred             HHHHHHhcc
Confidence            445444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.84  E-value=1.9e-18  Score=129.85  Aligned_cols=155  Identities=15%  Similarity=0.068  Sum_probs=132.3

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|.+.+.+++...
T Consensus        50 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  129 (234)
T TIGR02521        50 AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP  129 (234)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence            45678888888888888888999999999999999999999999888888888889999999999999999999888753


Q ss_pred             --CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523           81 --PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT  155 (244)
Q Consensus        81 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  155 (244)
                        +.....+..+|.++...|++++|...+.+++..+|++...+..+|.++...|++++|..++++++...|......
T Consensus       130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  206 (234)
T TIGR02521       130 LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL  206 (234)
T ss_pred             ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence              455677888899999999999999999999998888888888899999999999999999998888866644333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.83  E-value=9.4e-19  Score=153.68  Aligned_cols=151  Identities=11%  Similarity=0.066  Sum_probs=144.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|+++++.+|++...+..++......|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..+++++..+
T Consensus       561 A~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~  639 (987)
T PRK09782        561 RDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE  639 (987)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            467889999999999888888888888889999999999999999996 8999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      |+++.++.++|.++...|++++|+..++++++.+|+++.++.++|.++...|++++|+.+++++++++|+..
T Consensus       640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999854

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=8.4e-19  Score=136.74  Aligned_cols=160  Identities=19%  Similarity=0.284  Sum_probs=143.1

Q ss_pred             HHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHH
Q 039523            7 KLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA   86 (244)
Q Consensus         7 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~   86 (244)
                      .+..+|...++....+|+-|...++.++|+.+|+++++++|....+|..+|.-|+.+++...|++.|++|+.++|.+..+
T Consensus       321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA  400 (559)
T KOG1155|consen  321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA  400 (559)
T ss_pred             HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence            34444555566666778888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      |+.+|++|..++-..=|+-+|++|+.+.|+++..|..+|.||.++++.++|+.+|++++..........-.++++.+.+.
T Consensus       401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~  480 (559)
T KOG1155|consen  401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK  480 (559)
T ss_pred             HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999987665555555666555554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.82  E-value=4.8e-18  Score=132.31  Aligned_cols=149  Identities=14%  Similarity=0.085  Sum_probs=113.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+
T Consensus        83 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~  162 (296)
T PRK11189         83 ARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD  162 (296)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45678888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------------------------CCCCHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL-------------------------------------KRNGWQLWEN  123 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------------------------------------~p~~~~~~~~  123 (244)
                      |+++.... ...+....+++++|+..+.+++..                                     .|+...+|++
T Consensus       163 P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~  241 (296)
T PRK11189        163 PNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFY  241 (296)
T ss_pred             CCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            87763211 112233445566666666443322                                     2223457888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          124 YSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       124 la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +|.++...|++++|+.+|+++++.+|.
T Consensus       242 Lg~~~~~~g~~~~A~~~~~~Al~~~~~  268 (296)
T PRK11189        242 LAKYYLSLGDLDEAAALFKLALANNVY  268 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999975

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.82  E-value=1.6e-18  Score=120.55  Aligned_cols=127  Identities=17%  Similarity=0.123  Sum_probs=117.1

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523           36 KILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR  115 (244)
Q Consensus        36 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  115 (244)
                      ...++++++.+|++   +..+|.++...|++++|...|.+++..+|.++.+|..+|.++...|++++|+..|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46889999999975   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523          116 NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus       116 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      +++.+++++|.++...|++++|+..|.+++++.|+++..+.........+
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877766665555443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=2.8e-18  Score=146.84  Aligned_cols=151  Identities=13%  Similarity=0.051  Sum_probs=136.0

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYET----SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++    |+..|++++..+|+++.++..+|.++...|++++|+..++++
T Consensus       231 A~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        231 AIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4677888888899999999999999999999885    789999999999999999999999999999999999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      +..+|+++.++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++..|+.
T Consensus       311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            999999999999999999999999999999999999999888777778888999999999999999999998884

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.80  E-value=1.3e-17  Score=129.93  Aligned_cols=148  Identities=14%  Similarity=-0.014  Sum_probs=129.2

Q ss_pred             chHHHHHHhh---cc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523            2 MPAMKKLWKF---QM-ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         2 i~~~~~al~~---~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      |..+.+++..   +| ..+..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++
T Consensus        46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al  125 (296)
T PRK11189         46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL  125 (296)
T ss_pred             HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5667788864   33 3478899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+++...+.
T Consensus       126 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~  197 (296)
T PRK11189        126 ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK  197 (296)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence            9999999999999999999999999999999999999998742222 23345678999999999887765433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.80  E-value=1.3e-17  Score=121.81  Aligned_cols=130  Identities=22%  Similarity=0.236  Sum_probs=120.3

Q ss_pred             cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCC--hHHHHH
Q 039523           29 RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH-MIKNK--SKEAFI  105 (244)
Q Consensus        29 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~  105 (244)
                      .++.++++..++++++.+|++...|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            566788999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523          106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus       106 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                      .++++++.+|+++.++..+|..+...|++++|+.+|+++++..|........+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            99999999999999999999999999999999999999999998855444444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=6.1e-18  Score=132.81  Aligned_cols=150  Identities=19%  Similarity=0.220  Sum_probs=146.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |.+.|++++.++|.....|..+|.+|.+..+.++-...|.++..++|+++.+++..|.+++-++++++|+..|++++.++
T Consensus       345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~  424 (606)
T KOG0547|consen  345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD  424 (606)
T ss_pred             hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      |.+.-.+..++.+.+++++++++...|+.+.+..|+.++++...|.++..+++|+.|.+.|.+++++.|.
T Consensus       425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.78  E-value=4.9e-17  Score=147.55  Aligned_cols=161  Identities=19%  Similarity=0.177  Sum_probs=136.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh--------------HHHHHHHHHHHccCH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD--------------GWFALGAAALKARDV   66 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~g~~   66 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++..              ....+|.++...|++
T Consensus       288 A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~  367 (1157)
T PRK11447        288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL  367 (1157)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH
Confidence            578899999999999999999999999999999999999999999987653              123457788899999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-------------------
Q 039523           67 EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV-------------------  127 (244)
Q Consensus        67 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-------------------  127 (244)
                      ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.+                   
T Consensus       368 ~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~  447 (1157)
T PRK11447        368 AQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSAS  447 (1157)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence            9999999999999999999999999999999999999999999999999887766555443                   


Q ss_pred             -----------------------HHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523          128 -----------------------ALDVGNIGQALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus       128 -----------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                                             +...|++++|+..|+++++.+|+++...-.+..+
T Consensus       448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~  504 (1157)
T PRK11447        448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD  504 (1157)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                                   4457899999999999999999876544444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=5.1e-18  Score=135.63  Aligned_cols=167  Identities=13%  Similarity=0.130  Sum_probs=134.7

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-   80 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-   80 (244)
                      +=+|+.|++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||.+|...|.-.+|.+++.+.+... 
T Consensus       305 ~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p  384 (579)
T KOG1125|consen  305 ALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKP  384 (579)
T ss_pred             HHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence            3468889999999999999999999999999999999999999999999999999988888888888888888775543 


Q ss_pred             ----------------------------------------C--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523           81 ----------------------------------------P--ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW  118 (244)
Q Consensus        81 ----------------------------------------p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  118 (244)
                                                              |  .++++...||.+|...|+|+.|+.+|+.|+...|++.
T Consensus       385 ~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~  464 (579)
T KOG1125|consen  385 KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY  464 (579)
T ss_pred             cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH
Confidence                                                    2  3457788888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhccc
Q 039523          119 QLWENYSHVALDVGNIGQALEAVQMVLNITNNK---RIDTELLERIVLNLEGR  168 (244)
Q Consensus       119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~  168 (244)
                      ..|..||-.+..-.+.++|+..|.+|+++.|+.   ..++..-..-++.++++
T Consensus       465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA  517 (579)
T KOG1125|consen  465 LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA  517 (579)
T ss_pred             HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence            888888888888888888888888888888882   23333333444444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.77  E-value=2e-17  Score=145.42  Aligned_cols=151  Identities=12%  Similarity=0.001  Sum_probs=146.3

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+ +.++..+|.++.+.|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+
T Consensus       595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            56789999999996 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      |+++.+++++|.++...|++++|+..+++++...|++..+....|.+.....+++.+.+.+.+...++|+..
T Consensus       674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            999999999999999999999999999999999999999999999999999999999999999999988843

>PLN02789 farnesyltranstransferase

Probab=99.77  E-value=8.2e-17  Score=125.49  Aligned_cols=164  Identities=12%  Similarity=0.048  Sum_probs=150.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCH--HHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKARDV--EKALDVFTRAV   77 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~   77 (244)
                      |+..+.++++++|++..+|...+.++...| ++++++.++.+++..+|++..+|...+.++...|+.  ++++.++++++
T Consensus        56 AL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal  135 (320)
T PLN02789         56 ALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKIL  135 (320)
T ss_pred             HHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence            577899999999999999999999999998 689999999999999999999999999999999874  78899999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhcCC
Q 039523           78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV---GNI----GQALEAVQMVLNITNN  150 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~  150 (244)
                      +.+|.+..+|...+.++...|+++++++++.++++.+|.+..+|...+.+....   |.+    ++++.+..+++..+|+
T Consensus       136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~  215 (320)
T PLN02789        136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR  215 (320)
T ss_pred             HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999998776   333    4788889999999999


Q ss_pred             chhhHHHHHHHHHH
Q 039523          151 KRIDTELLERIVLN  164 (244)
Q Consensus       151 ~~~~~~~l~~~~~~  164 (244)
                      +...+..+..+...
T Consensus       216 N~SaW~Yl~~ll~~  229 (320)
T PLN02789        216 NESPWRYLRGLFKD  229 (320)
T ss_pred             CcCHHHHHHHHHhc
Confidence            88888877777765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.77  E-value=9.2e-17  Score=137.59  Aligned_cols=151  Identities=15%  Similarity=0.093  Sum_probs=128.6

Q ss_pred             chHHHHHHhhcc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHH----HHHHHHHH
Q 039523            2 MPAMKKLWKFQM-ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEK----ALDVFTRA   76 (244)
Q Consensus         2 i~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~a   76 (244)
                      +..+++++..+| ........++..+...|++++|+..+++++..+|+++.++..+|.++...|++++    |+..|+++
T Consensus       197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A  276 (656)
T PRK15174        197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA  276 (656)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence            455666666654 3334445567788888999999999999999999999999999999999999885    78999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      ++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++..|+..
T Consensus       277 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~  352 (656)
T PRK15174        277 LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS  352 (656)
T ss_pred             HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998888854

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=2.2e-17  Score=131.98  Aligned_cols=150  Identities=21%  Similarity=0.281  Sum_probs=141.3

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------------------------------
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS---------------------------------   47 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------------------------------   47 (244)
                      ||..++++++++|++..++..||..|...|.-..|..++.+.+...|                                 
T Consensus       338 ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~f  417 (579)
T KOG1125|consen  338 AISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELF  417 (579)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999976432                                 


Q ss_pred             ----------CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           48 ----------LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        48 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                                .++.+...||.+|...|+|++|+.+|+.++...|++...|..+|..+....+.++|+..|.+|+++.|+.
T Consensus       418 Leaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  418 LEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             HHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence                      2456788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          118 WQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       118 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +.+++++|.+|..+|.|++|..+|-.||.+.+.
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998876

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.77  E-value=1.5e-16  Score=135.21  Aligned_cols=142  Identities=8%  Similarity=-0.029  Sum_probs=137.7

Q ss_pred             HhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523            9 WKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN   88 (244)
Q Consensus         9 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~   88 (244)
                      ....|+++.+++.||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++..++
T Consensus        79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~  158 (694)
T PRK15179         79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL  158 (694)
T ss_pred             HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence            34478899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .+|.++...|++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++...+
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            99999999999999999999999999999999999999999999999999999999998765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.77  E-value=4.5e-17  Score=119.06  Aligned_cols=118  Identities=14%  Similarity=0.195  Sum_probs=111.6

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHH-HHccC--HHHHHHHHHHHHh
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAA-LKARD--VEKALDVFTRAVQ   78 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~a~~   78 (244)
                      +..++++++.+|+++..|..+|.++...|++++|+..|+++++.+|+++.++..+|.++ ...|+  +++|.+.++++++
T Consensus        59 i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~  138 (198)
T PRK10370         59 LQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA  138 (198)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999975 77787  5999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523           79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ  119 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  119 (244)
                      .+|+++.+++.+|.++...|++++|+.+++++++..|.+..
T Consensus       139 ~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        139 LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            99999999999999999999999999999999999887643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.76  E-value=6e-17  Score=111.91  Aligned_cols=116  Identities=20%  Similarity=0.306  Sum_probs=73.9

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      .|++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|...+++++..+|++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ  119 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  119 (244)
                      +..++.+|.++...|++++|+..++++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            666666666666666666666666666666665544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.76  E-value=8.4e-17  Score=111.17  Aligned_cols=129  Identities=22%  Similarity=0.248  Sum_probs=119.5

Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523           37 ILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN  116 (244)
Q Consensus        37 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  116 (244)
                      ..+++++..+|++..+...+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|...+++++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523          117 GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus       117 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      ++..++.+|.++...|++++|+..++++++.+|+..............+
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999776555555554433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.76  E-value=3.5e-16  Score=117.49  Aligned_cols=148  Identities=22%  Similarity=0.232  Sum_probs=135.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      .+..+..+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|.+.++++++..|.++.++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523           95 MIKNKSKEAFIAFKEALKLK--RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus        95 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      ...|++++|...+++++...  +.....+..+|.++...|++++|...+.++++..|+.......+..+.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            99999999999999999864  456778999999999999999999999999999998655444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4e-17  Score=128.28  Aligned_cols=158  Identities=14%  Similarity=0.136  Sum_probs=142.3

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      ...|.+|..++|.++.+|+..|++.+-.++++.|+.-|+++++++|++...+..++.+.++.++++++...|+.+++..|
T Consensus       380 ~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP  459 (606)
T KOG0547|consen  380 WKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP  459 (606)
T ss_pred             HHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcCCchhh
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVAL-DVGNIGQALEAVQMVLNITNNKRID  154 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~  154 (244)
                      +.+.++...|.++..++++++|++.|.+++.+.|.      ++..+...|.+.. -.+++..|+..++++++++|....+
T Consensus       460 ~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A  539 (606)
T KOG0547|consen  460 NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQA  539 (606)
T ss_pred             CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHH
Confidence            99999999999999999999999999999999998      5555555555433 3489999999999999999995544


Q ss_pred             HHHHH
Q 039523          155 TELLE  159 (244)
Q Consensus       155 ~~~l~  159 (244)
                      ...+.
T Consensus       540 ~~tla  544 (606)
T KOG0547|consen  540 YETLA  544 (606)
T ss_pred             HHHHH
Confidence            44433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.75  E-value=1.9e-16  Score=119.77  Aligned_cols=142  Identities=20%  Similarity=0.219  Sum_probs=120.0

Q ss_pred             hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH--
Q 039523           11 FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKARDVEKALDVFTRAVQLDPENGE--   85 (244)
Q Consensus        11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~--   85 (244)
                      .++..+..++.+|..++..|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..++++++.+|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4566788899999999999999999999999999988775   57788999999999999999999999999887765  


Q ss_pred             -HHHHHHHHHHHc--------CChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHH
Q 039523           86 -AWNIIACLHMIK--------NKSKEAFIAFKEALKLKRNGWQLW-----------------ENYSHVALDVGNIGQALE  139 (244)
Q Consensus        86 -~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~~~~~~A~~  139 (244)
                       +++.+|.++...        |++++|+..+++++..+|++...+                 ..+|.++...|++.+|+.
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence             688888888876        788899999999999998875432                 356888899999999999


Q ss_pred             HHHHHHhhcCCch
Q 039523          140 AVQMVLNITNNKR  152 (244)
Q Consensus       140 ~~~~al~~~p~~~  152 (244)
                      .++++++..|+.+
T Consensus       188 ~~~~al~~~p~~~  200 (235)
T TIGR03302       188 RFETVVENYPDTP  200 (235)
T ss_pred             HHHHHHHHCCCCc
Confidence            9999999888754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.9e-16  Score=126.44  Aligned_cols=144  Identities=19%  Similarity=0.201  Sum_probs=105.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----Cc---HHHHHHHHHHHH
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP----EN---GEAWNIIACLHM   95 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~---~~~~~~l~~~~~   95 (244)
                      |..|.+++++..|..+|.+++.+.|.++-+...+|.+.+..+.|.+|..+|++++..-+    ..   ...+.++|.++.
T Consensus       387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R  466 (611)
T KOG1173|consen  387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR  466 (611)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence            33333333333344444444444555555555555555555555555555555552211    11   234789999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      +++.+++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.+++-+.|++......|...++..+
T Consensus       467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~  537 (611)
T KOG1173|consen  467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDSE  537 (611)
T ss_pred             HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999888888888877744

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.74  E-value=7e-16  Score=125.23  Aligned_cols=153  Identities=15%  Similarity=0.104  Sum_probs=116.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY----PDGWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+|.++...|++++|...|.++
T Consensus        54 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~  133 (389)
T PRK11788         54 AIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL  133 (389)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5678888888888888888888888888888888888888887753322    245777888888888888888888888


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW-----QLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      ++.+|.+..++..++.++...|++++|+..++++++..|.+.     ..+..+|.++...|++++|+.+++++++..|+.
T Consensus       134 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  213 (389)
T PRK11788        134 VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC  213 (389)
T ss_pred             HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence            888777777777777777777777777777777777666542     245566777777777777777777777777664


Q ss_pred             hh
Q 039523          152 RI  153 (244)
Q Consensus       152 ~~  153 (244)
                      ..
T Consensus       214 ~~  215 (389)
T PRK11788        214 VR  215 (389)
T ss_pred             HH
Confidence            43

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.74  E-value=3.6e-16  Score=141.98  Aligned_cols=156  Identities=12%  Similarity=0.060  Sum_probs=125.3

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH----
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA----   76 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----   76 (244)
                      |+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+++..++.++..+...|++++|+..++++    
T Consensus       480 A~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~  559 (1157)
T PRK11447        480 AAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ  559 (1157)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence            5788999999999999999999999999999999999999999999998887777776666666666666655432    


Q ss_pred             ------------------------------------HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523           77 ------------------------------------VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL  120 (244)
Q Consensus        77 ------------------------------------~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  120 (244)
                                                          ++..|.++..+..+|.++...|++++|+..|+++++.+|+++.+
T Consensus       560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a  639 (1157)
T PRK11447        560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADA  639 (1157)
T ss_pred             cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence                                                22356777777788888888888888888888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523          121 WENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus       121 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      +..++.++...|++++|+..+++++...|++.....
T Consensus       640 ~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~  675 (1157)
T PRK11447        640 RLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR  675 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence            888888888888888888888888777776544333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.74  E-value=6.1e-16  Score=137.37  Aligned_cols=155  Identities=17%  Similarity=0.205  Sum_probs=98.8

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      +.+|+++++.+|++..++..+|.++...|++++|+..+++++..+|.+..++..++.++...|++++|...+.+++..+|
T Consensus       485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  564 (899)
T TIGR02917       485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP  564 (899)
T ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      .+...+..++.++...|++++|+..+++++...|.++..|..+|.++...|++++|+.+|+++++..|+++....
T Consensus       565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  639 (899)
T TIGR02917       565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL  639 (899)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            666666666666666666666666666666666666666666666666666666666666666666665444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.74  E-value=7.1e-16  Score=125.18  Aligned_cols=133  Identities=18%  Similarity=0.143  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-----HHHHHHHH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG-----EAWNIIAC   92 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~   92 (244)
                      ++..+|.++...|++++|+..|.++++.+|.+..++..++.++...|++++|++.+.++++..|.+.     ..+..+|.
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            4445555555555555555555555555554555555555555555555555555555555444331     12334455


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            5555555555555555555555555555555555555555555555555555554443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.74  E-value=6.7e-16  Score=137.12  Aligned_cols=158  Identities=18%  Similarity=0.203  Sum_probs=131.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|++++..+|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|...+++++...
T Consensus       518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  597 (899)
T TIGR02917       518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA  597 (899)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            45678888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                      |.++..|..+|.++...|++++|+..|+++++..|+++..+..+|.++...|++++|...++++++..|++......+
T Consensus       598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  675 (899)
T TIGR02917       598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL  675 (899)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888888755444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.73  E-value=3.4e-17  Score=127.03  Aligned_cols=165  Identities=23%  Similarity=0.277  Sum_probs=113.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN--SLYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |+++++++++.. .++..+.....++...++++++...++++....  +.++.+|..+|.++.+.|+.++|+++++++++
T Consensus        96 A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~  174 (280)
T PF13429_consen   96 ALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE  174 (280)
T ss_dssp             -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455666666654 456777778888889999999999999877654  66788899999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523           79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                      .+|+++.++..++.++...|+++++...+.......|+++..|..+|.++..+|++++|+.+++++++.+|+++.....+
T Consensus       175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~  254 (280)
T PF13429_consen  175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY  254 (280)
T ss_dssp             H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccc
Confidence            99999999999999999999999988888888888788888889999999999999999999999999999877766666


Q ss_pred             HHHHHHhc
Q 039523          159 ERIVLNLE  166 (244)
Q Consensus       159 ~~~~~~~~  166 (244)
                      ........
T Consensus       255 a~~l~~~g  262 (280)
T PF13429_consen  255 ADALEQAG  262 (280)
T ss_dssp             HHHHT---
T ss_pred             cccccccc
Confidence            66554444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.72  E-value=1.9e-15  Score=114.33  Aligned_cols=150  Identities=15%  Similarity=0.154  Sum_probs=133.5

Q ss_pred             CchHHHHHHhhccCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHHc--------cCH
Q 039523            1 MMPAMKKLWKFQMISQ---LELRSLARSAYNRGEYETSKILREAAMALNSLYPD---GWFALGAAALKA--------RDV   66 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------g~~   66 (244)
                      |+..|++++..+|+++   .+++.+|.++...|++++|+..++++++..|+++.   +++.+|.++...        |++
T Consensus        52 A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~  131 (235)
T TIGR03302        52 AIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA  131 (235)
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH
Confidence            4678899999999876   68899999999999999999999999999998876   689999999987        889


Q ss_pred             HHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 039523           67 EKALDVFTRAVQLDPENGEAW-----------------NIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWENYSH  126 (244)
Q Consensus        67 ~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~  126 (244)
                      ++|++.+++++..+|++..++                 ..+|.++...|++.+|+..+++++...|+.   +.++..+|.
T Consensus       132 ~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~  211 (235)
T TIGR03302       132 REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE  211 (235)
T ss_pred             HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence            999999999999999986542                 356888999999999999999999997764   589999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          127 VALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       127 ~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ++...|++++|..+++......|+
T Consensus       212 ~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       212 AYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC
Confidence            999999999999998887766553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.72  E-value=1.5e-16  Score=123.43  Aligned_cols=144  Identities=20%  Similarity=0.225  Sum_probs=102.5

Q ss_pred             HHHHHHhhc--cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            4 AMKKLWKFQ--MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         4 ~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      .++++....  |.++..|..+|.++...|+.++|+..++++++.+|+++.+...++.++...|+++++.+.+....+..|
T Consensus       132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~  211 (280)
T PF13429_consen  132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP  211 (280)
T ss_dssp             HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence            444544433  567888889999999999999999999999999999999998899999999999988888888888888


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      .++..|..+|.++...|++++|+.++++++..+|+++..+..+|.++...|+.++|..++.++++.
T Consensus       212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888888889999999999999999999999999999999999999999999999999888887753

>PLN02789 farnesyltranstransferase

Probab=99.71  E-value=1.8e-15  Score=117.99  Aligned_cols=163  Identities=11%  Similarity=0.021  Sum_probs=145.2

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEY--ETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      ++..++++++.+|++..+|...+.++...|+.  ++++.++.++++.+|.+..+|...+.++...|+++++++++.++++
T Consensus        91 eL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~  170 (320)
T PLN02789         91 ELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE  170 (320)
T ss_pred             HHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            46788999999999999999999999988874  7889999999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 039523           79 LDPENGEAWNIIACLHMIK---NKS----KEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNI  147 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~  147 (244)
                      .+|.+..+|+..+.+....   |.+    ++++.+..+++..+|++..+|..++.++..    .++..+|...+.+++..
T Consensus       171 ~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~  250 (320)
T PLN02789        171 EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK  250 (320)
T ss_pred             HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence            9999999999999998776   333    478888899999999999999999999988    45667899999999998


Q ss_pred             cCCchhhHHHHHHHHH
Q 039523          148 TNNKRIDTELLERIVL  163 (244)
Q Consensus       148 ~p~~~~~~~~l~~~~~  163 (244)
                      .|+.+..+..+..+..
T Consensus       251 ~~~s~~al~~l~d~~~  266 (320)
T PLN02789        251 DSNHVFALSDLLDLLC  266 (320)
T ss_pred             cCCcHHHHHHHHHHHH
Confidence            8887777776666654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.70  E-value=1.5e-15  Score=104.04  Aligned_cols=113  Identities=14%  Similarity=0.122  Sum_probs=101.4

Q ss_pred             HHHHHhhC-CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           39 REAAMALN-SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        39 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      +.....+. ++.....+.+|..+...|++++|...|+.+...+|.+...|+++|.++..+|++++|+..|.+++.++|++
T Consensus        23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34445566 77788889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523          118 WQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus       118 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      +.++.++|.|+...|+.+.|+..|+.++......
T Consensus       103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        103 PQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999887433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=6.5e-16  Score=115.01  Aligned_cols=118  Identities=19%  Similarity=0.225  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                      -+..-|.-+++.++|.+|+..|.+||+++|+++..|.+.+.+|.++|.++.|++.++.++.++|....+|..+|.+|..+
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence            34456777778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcccc
Q 039523          132 GNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRT  169 (244)
Q Consensus       132 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  169 (244)
                      |++++|++.|+++++++|++...+..|......+.+..
T Consensus       163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            88888888888888888887777777777776666443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=3.7e-16  Score=116.29  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      ++-+..-|.-++..++|.+|+..|.+||.++|.++..+++.|.+|.++|.++.|++.++.++.++|....+|..+|.++.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG  135 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~  135 (244)
                      .+|++++|++.|++++.++|++...+.+|..+-..++...
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999988888888877777665

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.68  E-value=4.1e-15  Score=129.84  Aligned_cols=145  Identities=15%  Similarity=0.079  Sum_probs=128.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..++++...+|....++..+|..+...|++++|+..++++++.+|.++.++..++.++...|++++|+..++++++.+
T Consensus        34 A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         34 VITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45677777777888888899999999999999999999999999999998889999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      |+++. +..+|.++...|++++|+..++++++..|++..++..++.++...|..++|+..++++..
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence            99988 888999999999999999999999999999999888899988888888888888886665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.67  E-value=1.2e-14  Score=106.31  Aligned_cols=161  Identities=19%  Similarity=0.148  Sum_probs=141.9

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523            5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus         5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      +-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|...++.|++.+|+..+.++....|+++
T Consensus        56 l~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~  134 (257)
T COG5010          56 LGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW  134 (257)
T ss_pred             HHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence            34556678999999 99999999999999999999999888999988888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN  164 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  164 (244)
                      .+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+......+....+.
T Consensus       135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~  214 (257)
T COG5010         135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL  214 (257)
T ss_pred             hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999987777666555666655554


Q ss_pred             hc
Q 039523          165 LE  166 (244)
Q Consensus       165 ~~  166 (244)
                      ..
T Consensus       215 ~g  216 (257)
T COG5010         215 QG  216 (257)
T ss_pred             cC
Confidence            44

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.9e-14  Score=104.71  Aligned_cols=164  Identities=13%  Similarity=0.006  Sum_probs=144.4

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      -.|+++....-|++.++....|..+...|++++|+++|+..++.+|.+..++.....+....|+-.+|++.+...++..+
T Consensus        72 q~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~  151 (289)
T KOG3060|consen   72 QKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM  151 (289)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence            35666666667999999999999999999999999999999999999998888888888889999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG---NIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                      .+.++|..++.+|...|+|++|.-++++.+-+.|-++.....+|.+++.+|   +.+.|..+|.++++++|.+...+-.+
T Consensus       152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887   67789999999999999654444444


Q ss_pred             HHHHHHh
Q 039523          159 ERIVLNL  165 (244)
Q Consensus       159 ~~~~~~~  165 (244)
                      ..-...+
T Consensus       232 ~lc~~~l  238 (289)
T KOG3060|consen  232 YLCGSAL  238 (289)
T ss_pred             HHHHHHH
Confidence            4433333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=4.7e-16  Score=116.98  Aligned_cols=162  Identities=15%  Similarity=0.167  Sum_probs=142.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|.+.++..|.+...+..+++++..++++++|.++|+.+++.+|.+.++.-.+|..|+-.++.+-|+.+|.+.++..
T Consensus       275 AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG  354 (478)
T KOG1129|consen  275 ALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG  354 (478)
T ss_pred             HHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence            45667777888899999999999999999999999999999999999999888888888999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR---NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTEL  157 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  157 (244)
                      -.++..+.++|.|++..++++-++..|++++....   .-.++|+++|.+....|++..|.++|+-++..+|++...+..
T Consensus       355 ~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN  434 (478)
T KOG1129|consen  355 AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN  434 (478)
T ss_pred             CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence            99999999999999999999999999999988744   237899999999999999999999999999999997766665


Q ss_pred             HHHHH
Q 039523          158 LERIV  162 (244)
Q Consensus       158 l~~~~  162 (244)
                      +..+.
T Consensus       435 LavL~  439 (478)
T KOG1129|consen  435 LAVLA  439 (478)
T ss_pred             HHHHH
Confidence            55443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.66  E-value=1e-14  Score=100.01  Aligned_cols=106  Identities=17%  Similarity=0.122  Sum_probs=101.4

Q ss_pred             hhc-cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523           10 KFQ-MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN   88 (244)
Q Consensus        10 ~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~   88 (244)
                      .+. +++-+..+.+|..++..|++++|...|+-+...+|.+...|++||.++...|++.+|+..|.+++.++|+++..+.
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            346 7788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523           89 IIACLHMIKNKSKEAFIAFKEALKLKR  115 (244)
Q Consensus        89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p  115 (244)
                      +.|.|+...|+.+.|.+.|+.++....
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998763

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.66  E-value=1.3e-14  Score=106.15  Aligned_cols=141  Identities=15%  Similarity=0.127  Sum_probs=132.2

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      ...++...+|.+...+..+|...+..|++..|+..++++....|+++.+|..+|.+|.+.|++++|...|.+++++.|++
T Consensus        88 ~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~  167 (257)
T COG5010          88 VLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE  167 (257)
T ss_pred             HHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC
Confidence            34455556888988998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                      +.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+...+|++.+|.....+-
T Consensus       168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            9999999999999999999999999999999999999999999999999999998776543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=4.3e-16  Score=117.18  Aligned_cols=150  Identities=15%  Similarity=0.204  Sum_probs=143.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+++|+.+++.+|.+.++...+|..|+..++.+-|+.+|++.+++.-.++..++++|.|++..+++|-++..|++++...
T Consensus       309 a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta  388 (478)
T KOG1129|consen  309 ALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA  388 (478)
T ss_pred             HHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999998764


Q ss_pred             C---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           81 P---ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        81 p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .   .-.++|+++|.+....|++..|..+|+-++..++++..++.++|.+..+.|+.++|..++..+-...|+
T Consensus       389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            3   346899999999999999999999999999999999999999999999999999999999999999987

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.65  E-value=5e-14  Score=123.14  Aligned_cols=160  Identities=13%  Similarity=0.082  Sum_probs=147.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.++++ -..+|-++........+....|+.++|+..+.++...+|....++..+|.++...|++++|.+.++++++.+
T Consensus         1 ~~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~   79 (765)
T PRK10049          1 ALSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE   79 (765)
T ss_pred             Cchhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5677777 556788899899999999999999999999999999899999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |.++.++..++.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++......+..
T Consensus        80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~  158 (765)
T PRK10049         80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ  158 (765)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999 9999999999999999999999999999997665554444


Q ss_pred             HH
Q 039523          161 IV  162 (244)
Q Consensus       161 ~~  162 (244)
                      +.
T Consensus       159 ~l  160 (765)
T PRK10049        159 AL  160 (765)
T ss_pred             HH
Confidence            43

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.61  E-value=3.8e-14  Score=112.96  Aligned_cols=113  Identities=16%  Similarity=0.170  Sum_probs=107.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN   98 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~   98 (244)
                      +...|...+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           99 KSKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                      ++++|+..|++++.++|++..+...++.|...+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999988886655

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.61  E-value=1e-13  Score=120.22  Aligned_cols=165  Identities=10%  Similarity=0.010  Sum_probs=122.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+|.++...|++++|++.|+++++.+
T Consensus        53 Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d  132 (822)
T PRK14574         53 VLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD  132 (822)
T ss_pred             HHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            56778888888888864444777777788888888888888883334444445555778888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |+++.++..++.++...++.++|+..++++...+|..... ..++.++...++..+|+..++++++.+|++......+..
T Consensus       133 P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~  211 (822)
T PRK14574        133 PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLE  211 (822)
T ss_pred             CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            8888888888888888888888888888888888875444 555666656677767888888888888886555444444


Q ss_pred             HHHHhc
Q 039523          161 IVLNLE  166 (244)
Q Consensus       161 ~~~~~~  166 (244)
                      .+....
T Consensus       212 ~l~~~~  217 (822)
T PRK14574        212 ILQRNR  217 (822)
T ss_pred             HHHHcC
Confidence            444333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.61  E-value=2.6e-13  Score=107.33  Aligned_cols=154  Identities=18%  Similarity=0.149  Sum_probs=140.0

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      .|....+++..+..++..|++++|+..++..+...|+|+..+...+.+++..|+.++|.+.+++++..+|+.+..++++|
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      .++.+.|++.+|+..+...+..+|+++..|..++..|..+|+..++...+.+...+..+.......+....+.+
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999888888887766444444444444433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.58  E-value=1.9e-13  Score=115.51  Aligned_cols=165  Identities=15%  Similarity=0.145  Sum_probs=124.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNR---GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      |+..|+++++++|.++.++..||.+-...   ..+..+...+.++...++.+|.++..++.-++..|+|..+..+...++
T Consensus       218 a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai  297 (1018)
T KOG2002|consen  218 ALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI  297 (1018)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence            34567777777777777777777665543   346667777777777777777777777877778888888877777777


Q ss_pred             hcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523           78 QLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        78 ~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                      ...-..   ...++.+|.++..+|++++|..+|.++++.+|++ ...++.+|..+...|+++.|..+|+++++..|+...
T Consensus       298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e  377 (1018)
T KOG2002|consen  298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE  377 (1018)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence            655332   3457888888888888888888888888888877 777888888888888888888888888888888777


Q ss_pred             hHHHHHHHHHHh
Q 039523          154 DTELLERIVLNL  165 (244)
Q Consensus       154 ~~~~l~~~~~~~  165 (244)
                      ....++.+....
T Consensus       378 tm~iLG~Lya~~  389 (1018)
T KOG2002|consen  378 TMKILGCLYAHS  389 (1018)
T ss_pred             HHHHHHhHHHhh
Confidence            777666665554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.58  E-value=1.1e-13  Score=113.97  Aligned_cols=162  Identities=35%  Similarity=0.586  Sum_probs=145.6

Q ss_pred             hHHHHHHhh-ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            3 PAMKKLWKF-QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         3 ~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      .+|++|+++ +-.++.+...+|......++|.++.+.++..++++|-....|+.+|.+..+.++++.|.++|...+..+|
T Consensus       471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P  550 (777)
T KOG1128|consen  471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP  550 (777)
T ss_pred             HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            578899888 4457788888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                      ++..+|.+++..|.+.|+-.+|...+.++++.+-.++.+|.|...+....|.+++|+..+.+.+.+..+.. +...+..+
T Consensus       551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~-d~~vl~~i  629 (777)
T KOG1128|consen  551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK-DDEVLLII  629 (777)
T ss_pred             CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc-cchhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988755433 44444444


Q ss_pred             HHHh
Q 039523          162 VLNL  165 (244)
Q Consensus       162 ~~~~  165 (244)
                      ....
T Consensus       630 v~~~  633 (777)
T KOG1128|consen  630 VRTV  633 (777)
T ss_pred             HHHH
Confidence            4333

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.57  E-value=2.8e-13  Score=102.88  Aligned_cols=155  Identities=15%  Similarity=0.154  Sum_probs=129.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|..|++.+|++..+++..|.+|..+|+-..|+.-+.+.+++.|+...+....|.+++++|++++|...|..+++.+
T Consensus        57 ALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~  136 (504)
T KOG0624|consen   57 ALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE  136 (504)
T ss_pred             HHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC
Confidence            46678888888888888888888888888888888888888888888888888888888888888888888888888777


Q ss_pred             CCc-------------------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523           81 PEN-------------------------------------------------GEAWNIIACLHMIKNKSKEAFIAFKEAL  111 (244)
Q Consensus        81 p~~-------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~  111 (244)
                      |++                                                 +..+...+.||...|+...|+.-++.+-
T Consensus       137 ~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as  216 (504)
T KOG0624|consen  137 PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS  216 (504)
T ss_pred             CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            643                                                 2345566778888888888888888888


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523          112 KLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT  155 (244)
Q Consensus       112 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  155 (244)
                      ++..++....+.++.+++..|+.+.++.-.+++++++|++....
T Consensus       217 kLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf  260 (504)
T KOG0624|consen  217 KLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF  260 (504)
T ss_pred             hccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence            88888889999999999999999999999999999999955443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.57  E-value=6.9e-13  Score=111.45  Aligned_cols=135  Identities=21%  Similarity=0.367  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      ...+...|+..+..|++++|...+.++++.+|.++.+|+.||.+|...|+..+|....-.|-.++|.+.+.|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            45677888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .+|.+++|.-+|.+|++.+|.+....+..+.+|.+.|+...|...|.+.+...|.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence            9999999999999999999999999999999999999999999999999999983

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.9e-13  Score=108.95  Aligned_cols=148  Identities=20%  Similarity=0.196  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------------------------CCChhHHHHHHHHHHHccCHHHHHH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALN--------------------------SLYPDGWFALGAAALKARDVEKALD   71 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A~~   71 (244)
                      +...+|..+...++++.|+.+|.+++...                          |.-...-..-|..+++.|+|..|+.
T Consensus       300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~  379 (539)
T KOG0548|consen  300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK  379 (539)
T ss_pred             HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence            34446777777788888888887776543                          3233334566888999999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           72 VFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        72 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      .|.++++.+|+++..|.+.|.||.++|.+..|+..++.+++++|+....|...|.++..+.+|++|.+.|.++++++|+.
T Consensus       380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~  459 (539)
T KOG0548|consen  380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN  459 (539)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhHHHHHHHHHHh
Q 039523          152 RIDTELLERIVLNL  165 (244)
Q Consensus       152 ~~~~~~l~~~~~~~  165 (244)
                      ......+.+.....
T Consensus       460 ~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  460 AEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666655543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=8.4e-14  Score=107.79  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=141.6

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh------------HHHHHHHHHHHccCHHHHHHHH
Q 039523            6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD------------GWFALGAAALKARDVEKALDVF   73 (244)
Q Consensus         6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~~A~~~~   73 (244)
                      -..+++++.+.++++..|.+++..++.++|+..|.+++.++|++..            .|..-|.-.++.|++.+|.++|
T Consensus       193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y  272 (486)
T KOG0550|consen  193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY  272 (486)
T ss_pred             HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence            3456779999999999999999999999999999999999998643            5677788899999999999999


Q ss_pred             HHHHhcCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523           74 TRAVQLDPEN----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus        74 ~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  149 (244)
                      ..++.++|++    ...|.+++.+..++|+.++|+..+..++.++|....++...|.|+..+++|++|++.|+++++...
T Consensus       273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999975    457899999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CchhhHHHHHHHHHHhc
Q 039523          150 NKRIDTELLERIVLNLE  166 (244)
Q Consensus       150 ~~~~~~~~l~~~~~~~~  166 (244)
                      + ......+......+.
T Consensus       353 s-~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  353 D-CEIRRTLREAQLALK  368 (486)
T ss_pred             c-cchHHHHHHHHHHHH
Confidence            6 444555555544444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.56  E-value=2.1e-13  Score=108.72  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG  132 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~  132 (244)
                      +...|..++..|++++|+.+|.++++.+|+++.+++++|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523          133 NIGQALEAVQMVLNITNNKRIDTELLERIVLNLEG  167 (244)
Q Consensus       133 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  167 (244)
                      ++++|+..|+++++++|++......+......+..
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999988777777777666643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=4e-13  Score=107.74  Aligned_cols=167  Identities=14%  Similarity=0.114  Sum_probs=124.5

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      .++|.|+..++|....+|...|..+...|+.++|+.+|..|-+.-|....-...+|.-|.+.+++.-|.+.|.+++.+.|
T Consensus       332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P  411 (611)
T KOG1173|consen  332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP  411 (611)
T ss_pred             HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence            45666666666666677777777777777777777777777666666655556667777777788888888888888889


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR-------NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID  154 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  154 (244)
                      .+|-++..+|.+.+..+.|.+|..+|+.++..-+       .....+.++|.++.+++.+++|+.++++++.+.|.+...
T Consensus       412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~  491 (611)
T KOG1173|consen  412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST  491 (611)
T ss_pred             CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence            9999999999999999999999999988884321       124568899999999999999999999999999986543


Q ss_pred             H---HHHHHHHHHhccc
Q 039523          155 T---ELLERIVLNLEGR  168 (244)
Q Consensus       155 ~---~~l~~~~~~~~~~  168 (244)
                      .   +.+..+.+++..+
T Consensus       492 ~asig~iy~llgnld~A  508 (611)
T KOG1173|consen  492 HASIGYIYHLLGNLDKA  508 (611)
T ss_pred             HHHHHHHHHHhcChHHH
Confidence            3   3344455555433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=7.7e-13  Score=102.68  Aligned_cols=165  Identities=13%  Similarity=0.069  Sum_probs=141.0

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHH---------
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALD---------   71 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---------   71 (244)
                      |+.+-+|+++.+|.+..++...|..+...|+.++|+-.|+.+..+.|.....+..+..+|+..|.+.+|.-         
T Consensus       319 AL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~  398 (564)
T KOG1174|consen  319 ALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF  398 (564)
T ss_pred             HHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence            45667888999999999999999999999999999999999999999999999999888888777665554         


Q ss_pred             ---------------------------HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523           72 ---------------------------VFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY  124 (244)
Q Consensus        72 ---------------------------~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  124 (244)
                                                 .++++++++|....+...++.++...|.+++++..+++.+...|+. ..+..+
T Consensus       399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~L  477 (564)
T KOG1174|consen  399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHL  477 (564)
T ss_pred             hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHH
Confidence                                       4445566667777788888888999999999999999999988864 578889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      |.++...+.+++|.++|..+++++|++......+.++.....
T Consensus       478 gd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  478 GDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence            999999999999999999999999998888887777765544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.7e-12  Score=97.46  Aligned_cols=136  Identities=22%  Similarity=0.234  Sum_probs=121.4

Q ss_pred             CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---hHHHHHHH
Q 039523           31 EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK---SKEAFIAF  107 (244)
Q Consensus        31 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~  107 (244)
                      +.+.-+.-++..+..+|++..-|..||.+|+..|+++.|...|.+++++.|++++.+..+|.++..+.+   ..++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            356667788888999999999999999999999999999999999999999999999999998876543   57899999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          108 KEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       108 ~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ++++..+|++..+...+|..++..|+|.+|...|+..++..|.+......+++......
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~  275 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARAL  275 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999886666666666554443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.55  E-value=7.3e-13  Score=104.20  Aligned_cols=163  Identities=17%  Similarity=0.029  Sum_probs=116.5

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      .+|-+...+--+++++++.++.+|..+.+...|++++.++..+-|+++.++..+|.+|.+.|+-..|.+++-...+..|.
T Consensus       545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~  624 (840)
T KOG2003|consen  545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC  624 (840)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence            34444433344556666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523           83 NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      +..+.--+|..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|..|.+.|+..-+..|.+...+..+-++.
T Consensus       625 nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~  704 (840)
T KOG2003|consen  625 NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA  704 (840)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence            66666666666667667788999999998899988888888899999999999999999999999998666655555544


Q ss_pred             HHh
Q 039523          163 LNL  165 (244)
Q Consensus       163 ~~~  165 (244)
                      +.+
T Consensus       705 ~dl  707 (840)
T KOG2003|consen  705 GDL  707 (840)
T ss_pred             ccc
Confidence            433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.55  E-value=3e-13  Score=108.55  Aligned_cols=147  Identities=16%  Similarity=0.140  Sum_probs=112.6

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAM----ALNSLYPDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      ++.++++++.+|++..++.. +..+...|++..+.....+++    ..+|....+...+|.++...|++++|...+++++
T Consensus        63 ~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al  141 (355)
T cd05804          63 LALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL  141 (355)
T ss_pred             HHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45677777777777766654 444444444333333333333    3455555666778889999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523           78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW----QLWENYSHVALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  149 (244)
                      +.+|+++.++..+|.++...|++++|+.++++++...|.++    ..+..++.++...|++++|+..+++++...|
T Consensus       142 ~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         142 ELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999876432    3466789999999999999999999887666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.54  E-value=5.5e-13  Score=112.86  Aligned_cols=158  Identities=18%  Similarity=0.197  Sum_probs=141.2

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      +.++.++...+|.+|.++..|+..++..|+|..+......++......   ...++.+|.++...|+|++|..+|.++++
T Consensus       256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k  335 (1018)
T KOG2002|consen  256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK  335 (1018)
T ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence            567889999999999999999999999999999999999999876433   45699999999999999999999999999


Q ss_pred             cCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhcCCchh
Q 039523           79 LDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG----NIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        79 ~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~  153 (244)
                      .+|++ .-.++.+|+.+...|+++.|+.+|++++...|++......+|.+|...+    ..+.|..+..++++..|.+..
T Consensus       336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~  415 (1018)
T KOG2002|consen  336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE  415 (1018)
T ss_pred             cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence            99988 6778899999999999999999999999999999999999999998886    667889999999999888554


Q ss_pred             hHHHHH
Q 039523          154 DTELLE  159 (244)
Q Consensus       154 ~~~~l~  159 (244)
                      ++-.+.
T Consensus       416 a~l~la  421 (1018)
T KOG2002|consen  416 AWLELA  421 (1018)
T ss_pred             HHHHHH
Confidence            444433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1.4e-12  Score=98.19  Aligned_cols=149  Identities=18%  Similarity=0.150  Sum_probs=103.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------------------------------
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY-------------------------------   49 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------------------------   49 (244)
                      |+..|-..++.+|...++...||+.|.+.|..|.|+...+..+.. |+.                               
T Consensus        54 AvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~  132 (389)
T COG2956          54 AVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQ  132 (389)
T ss_pred             HHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            456777777778888888888888888888877777765554432 211                               


Q ss_pred             --------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523           50 --------PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN-----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN  116 (244)
Q Consensus        50 --------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  116 (244)
                              ..+...+..+|....+|++|++.-++..++.|..     +..+..++..+....+.+.|+..+.++++.+|+
T Consensus       133 L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~  212 (389)
T COG2956         133 LVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK  212 (389)
T ss_pred             HhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence                    2234444555555555555555555555555543     345666777777777788888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          117 GWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       117 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +..+-..+|.++...|+|+.|++.++.+++.+|+
T Consensus       213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         213 CVRASIILGRVELAKGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence            8888888888888888888888888888888777

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=3.2e-13  Score=107.73  Aligned_cols=135  Identities=17%  Similarity=0.146  Sum_probs=123.5

Q ss_pred             hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523           10 KFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI   89 (244)
Q Consensus        10 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~   89 (244)
                      -++|.-...-...|+.++..|+|..|+..|.+++..+|+++..+.+.|.||.+.|++..|+..++++++++|+...+|..
T Consensus       352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R  431 (539)
T KOG0548|consen  352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR  431 (539)
T ss_pred             hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence            34777777788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523           90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus        90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                      .|.++..+.+|++|.+.|.++++.+|++..+...+..|...+.......+..+++
T Consensus       432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~  486 (539)
T KOG0548|consen  432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRA  486 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence            9999999999999999999999999999999999999988765555555555553

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.53  E-value=5.1e-13  Score=113.91  Aligned_cols=120  Identities=13%  Similarity=-0.021  Sum_probs=114.3

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |..+++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++.+.+.+|.++.+.|++++|..+|++++..+
T Consensus       105 a~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~  184 (694)
T PRK15179        105 GLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH  184 (694)
T ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL  120 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  120 (244)
                      |+++.++..+|.++...|+.++|...|++++....+-...
T Consensus       185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            9999999999999999999999999999999987655444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.52  E-value=1.7e-12  Score=112.70  Aligned_cols=145  Identities=11%  Similarity=-0.047  Sum_probs=130.1

Q ss_pred             hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523           10 KFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI   89 (244)
Q Consensus        10 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~   89 (244)
                      -..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|........
T Consensus        28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla  107 (822)
T PRK14574         28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS  107 (822)
T ss_pred             ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence            34789999999999999999999999999999999999997555589999999999999999999999444445555555


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523           90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID  154 (244)
Q Consensus        90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  154 (244)
                      +|.++..+|++++|++.|+++++.+|+++.++..++..+...++.++|+..++++...+|+....
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            58899999999999999999999999999999999999999999999999999999999985443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.52  E-value=2.6e-12  Score=108.09  Aligned_cols=148  Identities=19%  Similarity=0.158  Sum_probs=135.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |++++.++++.+|.++.+|+.||.+|.++|+.+++..++..|-.++|.+...|..++....+.|++++|.-+|.++++.+
T Consensus       158 A~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~  237 (895)
T KOG2076|consen  158 AEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN  237 (895)
T ss_pred             HHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-----WQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      |.+....+..+.++.++|+...|...|.+++...|..     -......+..+...++-+.|+..++.++...
T Consensus       238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~  310 (895)
T KOG2076|consen  238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE  310 (895)
T ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999832     1233445777888888899999999998843

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=2.5e-12  Score=96.88  Aligned_cols=148  Identities=17%  Similarity=0.188  Sum_probs=131.9

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----hhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY-----PDGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      |....+....-..+...|..+|....+|++|++..++..+..+..     +..++.+|..+....+.+.|...+.++++.
T Consensus       130 f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa  209 (389)
T COG2956         130 FNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA  209 (389)
T ss_pred             HHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence            333333333456788899999999999999999999999998765     457899999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      +|++..+-+.+|.+....|+|..|++.++.+++.+|.. +.+...+..||..+|+.++....+.++.+..++..
T Consensus       210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            99999999999999999999999999999999999986 67888999999999999999999999999988744

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.51  E-value=1.2e-12  Score=108.51  Aligned_cols=138  Identities=20%  Similarity=0.208  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      ...|...|..+...+..++|..++.++-.++|..+..|+..|.++...|++.+|.+.|..++.++|+++.....+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523           96 IKNKSKEAFI--AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        96 ~~~~~~~A~~--~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                      ..|+-.-|..  .+..+++++|.++.+|+.+|.++...|+.+.|.++|..++.+.+..|+
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            9999888888  999999999999999999999999999999999999999999887653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.51  E-value=1.5e-12  Score=87.65  Aligned_cols=103  Identities=15%  Similarity=0.108  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNII   90 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l   90 (244)
                      ..++.+|..+...|++++|+..+.+++...|++   +.+++.+|.++...|++++|+..+++++..+|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            445666666666666666666666666666544   3455566666666666666666666666655543   4456666


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523           91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQ  119 (244)
Q Consensus        91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  119 (244)
                      |.++...|++++|...+.+++...|++..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            66666666666666666666666665544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.50  E-value=1.3e-12  Score=87.92  Aligned_cols=107  Identities=16%  Similarity=0.149  Sum_probs=97.7

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWEN  123 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~  123 (244)
                      +..++.+|..+...|++++|.+.|.+++..+|++   +.+++.+|.++...|+++.|+..+++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578899999999999999999999999998876   5789999999999999999999999999998875   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523          124 YSHVALDVGNIGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus       124 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      +|.++...|++++|..++.++++..|++.....
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999999765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=9.1e-12  Score=90.91  Aligned_cols=151  Identities=12%  Similarity=0.055  Sum_probs=137.5

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      .|+-...+-....+....|+.+.|..++++.-...|.+..+....|..+...|++++|+++|+..+.-+|.+...+-..-
T Consensus        48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            45556666777788889999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      .+...+|+--+|++.+...++..+++.++|..++.+|...|+|++|..|+++.+-+.|-++.....+....
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~  198 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL  198 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999776666655543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.50  E-value=7.2e-13  Score=108.26  Aligned_cols=148  Identities=21%  Similarity=0.239  Sum_probs=125.4

Q ss_pred             CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHcc
Q 039523            1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKAR   64 (244)
Q Consensus         1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g   64 (244)
                      |+.+++.|++.        +|.-......+|..|..++++++|+..|++++.+.        |..+.++.+||.+|...|
T Consensus       218 A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G  297 (508)
T KOG1840|consen  218 AEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG  297 (508)
T ss_pred             HHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Confidence            45677778777        55555666679999999999999999999999863        334567899999999999


Q ss_pred             CHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHH
Q 039523           65 DVEKALDVFTRAVQLD--------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--------RNGWQLWENYSHVA  128 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~  128 (244)
                      ++++|..++++++.+.        |.-+..+.+++.++..++++++|+.++++++++.        +.-+..+.++|.++
T Consensus       298 Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~  377 (508)
T KOG1840|consen  298 KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY  377 (508)
T ss_pred             ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            9999999999998863        2334578889999999999999999999998762        23467899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhc
Q 039523          129 LDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~~  148 (244)
                      ..+|++++|.+++++++.+.
T Consensus       378 ~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  378 LKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHhcchhHHHHHHHHHHHHH
Confidence            99999999999999999875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.49  E-value=4.8e-12  Score=102.80  Aligned_cols=151  Identities=11%  Similarity=0.081  Sum_probs=94.8

Q ss_pred             hHHHHHHhhccCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh---
Q 039523            3 PAMKKLWKFQMISQLE-LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ---   78 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---   78 (244)
                      .+|+++.+.+|++..+ ....+.++...|++++|...++++.+.+|+++.++..++.++...|++++|.+.+.+..+   
T Consensus       139 ~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        139 QHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence            4555565555554322 223355666666666666666666666666666666666666666666665533332221   


Q ss_pred             ---------------------------------------cCCCcHHHHHHHHHHHHHcCCh-------------------
Q 039523           79 ---------------------------------------LDPENGEAWNIIACLHMIKNKS-------------------  100 (244)
Q Consensus        79 ---------------------------------------~~p~~~~~~~~l~~~~~~~~~~-------------------  100 (244)
                                                             ..|+++.++..++..+...|+.                   
T Consensus       219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l  298 (398)
T PRK10747        219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL  298 (398)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence                                                   1133455555555555544444                   


Q ss_pred             ------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523          101 ------------KEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus       101 ------------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                                  +++++.+++.++.+|+++..+..+|.++...|++++|..+|+++++..|+...
T Consensus       299 ~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        299 VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence                        45555555555566888888999999999999999999999999999998553

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.49  E-value=4.1e-13  Score=105.56  Aligned_cols=148  Identities=15%  Similarity=0.155  Sum_probs=126.1

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      +-..|+..+..++.++.+.|++.+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+++|-+.-.+--++
T Consensus       478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn  557 (840)
T KOG2003|consen  478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN  557 (840)
T ss_pred             HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence            44567777778888888888888888999999999999988888888888888888888899999988888887777788


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      ..+++.++.+|..+.+..+|++++-++..+-|+++.++..+|.+|-..|+-..|.+++-...+..|-+
T Consensus       558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n  625 (840)
T KOG2003|consen  558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN  625 (840)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc
Confidence            88888888888888888888888888888888888888888888888888888888877777777763

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.48  E-value=2.9e-12  Score=92.06  Aligned_cols=120  Identities=21%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI   89 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~   89 (244)
                      +..+..++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3456667788888888888888888888888766543   3577788888888888888888888888888888777778


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      +|.++...|+...+...+..++.                    .+++|..++++++..+|++.
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence            88888777776666655544432                    26778888888888888853

>TIGR00540 hemY_coli hemY protein

Probab=99.48  E-value=5.4e-12  Score=102.94  Aligned_cols=144  Identities=17%  Similarity=0.059  Sum_probs=123.5

Q ss_pred             hHHHHHHhhcc----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHccCHHHHHHHHHHH
Q 039523            3 PAMKKLWKFQM----ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGW--FALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus         3 ~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      +.+.++++..|    +++..+..+|..+...|++++|...++++++..|++....  ..........++.+++.+.++++
T Consensus       246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~  325 (409)
T TIGR00540       246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ  325 (409)
T ss_pred             HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence            35566677667    5899999999999999999999999999999999887532  23333445568899999999999


Q ss_pred             HhcCCCcH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           77 VQLDPENG--EAWNIIACLHMIKNKSKEAFIAFK--EALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        77 ~~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      ++..|+++  .....+|.++.+.|++++|.++|+  .+++..|+... +..+|.++...|+.++|..+|++++..
T Consensus       326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999  888899999999999999999999  57778887655 559999999999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.3e-12  Score=96.75  Aligned_cols=115  Identities=19%  Similarity=0.170  Sum_probs=107.0

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC---HHHHHHHHHHHHhc
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARD---VEKALDVFTRAVQL   79 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~   79 (244)
                      .-++.-+..+|+|++.|..||.+|+..|+++.|...|.+++++.|+++..+..+|.++....+   ..++...++++++.
T Consensus       143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            345677888999999999999999999999999999999999999999999999999887654   56899999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      +|++..+.+.+|..++..|+|.+|...++..+...|.+
T Consensus       223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999998765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.48  E-value=5e-12  Score=103.32  Aligned_cols=166  Identities=11%  Similarity=0.031  Sum_probs=139.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+++++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.+.|+.-.|...++++.-.+
T Consensus       670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN  749 (913)
T KOG0495|consen  670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN  749 (913)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence            46778888888888888888889998888888889888888888888888888888888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------------------------------HHHHHHHHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------------------------------WQLWENYSHVALD  130 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~la~~~~~  130 (244)
                      |.+...|......-.+.|..+.|.....+|++-.|++                              +.++...|..+..
T Consensus       750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~  829 (913)
T KOG0495|consen  750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS  829 (913)
T ss_pred             CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence            9888888888888888888888888888888776644                              3456677778888


Q ss_pred             cCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          131 VGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       131 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ..+++.|+..|.++++.+|+.+..+..+.+......
T Consensus       830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG  865 (913)
T KOG0495|consen  830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG  865 (913)
T ss_pred             HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence            888999999999999999998888887777665554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.47  E-value=1.6e-11  Score=97.37  Aligned_cols=148  Identities=18%  Similarity=0.124  Sum_probs=128.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |.+.++..+...|+++..+-..+.+++..++..+|.+.+++++..+|+.+..+.++|..+++.|++++|+..++..+..+
T Consensus       325 A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~  404 (484)
T COG4783         325 ALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND  404 (484)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence            45667788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |+++..|..++..|..+|+..++...                 .+..+...|++++|+..+..+.+...-....+.....
T Consensus       405 p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~da  467 (484)
T COG4783         405 PEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADA  467 (484)
T ss_pred             CCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            99999999999999999998777654                 4667788899999999999998877444444554444


Q ss_pred             HHHHh
Q 039523          161 IVLNL  165 (244)
Q Consensus       161 ~~~~~  165 (244)
                      .+..+
T Consensus       468 ri~~~  472 (484)
T COG4783         468 RIDQL  472 (484)
T ss_pred             HHHHH
Confidence            44433

>TIGR00540 hemY_coli hemY protein

Probab=99.46  E-value=1.2e-11  Score=100.93  Aligned_cols=163  Identities=7%  Similarity=0.007  Sum_probs=109.2

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------------------------
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMAL------------------------------------   45 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------------------------   45 (244)
                      +..+++.++.+|+++.++..++.++...|++++|...+.+..+.                                    
T Consensus       173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            45566677777777777777777777777777666655544422                                    


Q ss_pred             --CC----CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           46 --NS----LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW--NIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        46 --~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                        .|    +++.++..+|..+...|++++|.+.++++++..|++....  ..........++.+.+.+.++++++..|++
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~  332 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK  332 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence              12    2455566667777777777777777777777777766421  222223334466777777777777778888


Q ss_pred             H--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhcCCchhhHHHHHHHHHHh
Q 039523          118 W--QLWENYSHVALDVGNIGQALEAVQ--MVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus       118 ~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      +  .....+|+++...|++++|.++|+  .+++..|+... ...+..+....
T Consensus       333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~  383 (409)
T TIGR00540       333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQA  383 (409)
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHc
Confidence            8  777788888888888888888888  57777777543 33444444433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.46  E-value=2.3e-12  Score=82.59  Aligned_cols=97  Identities=30%  Similarity=0.448  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN   98 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~   98 (244)
                      ++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|.+++++++...|.+..++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            44455555555555555555555555555444455555555555555555555555555555554445555555555555


Q ss_pred             ChHHHHHHHHHHHhcCC
Q 039523           99 KSKEAFIAFKEALKLKR  115 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~~p  115 (244)
                      +++.|...+.+++...|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            55555555554444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.46  E-value=2.2e-12  Score=82.68  Aligned_cols=99  Identities=27%  Similarity=0.420  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                      +++.+|.++...|++++|+..+.++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCC
Q 039523          132 GNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       132 ~~~~~A~~~~~~al~~~p~  150 (244)
                      |+++.|...+.++++..|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988774

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.46  E-value=4.7e-12  Score=90.69  Aligned_cols=122  Identities=15%  Similarity=0.122  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHH
Q 039523           31 EYETSKILREAAMALNSLY--PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFI  105 (244)
Q Consensus        31 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~  105 (244)
                      .+..+...+...++.++..  ...++.+|.++...|++++|+..|.+++.+.|+.   +.++.++|.++...|++++|+.
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            3444555554444444433  4556777777777777777777777777665542   3467777777777777777777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhcCCch
Q 039523          106 AFKEALKLKRNGWQLWENYSHVAL-------DVGNIG-------QALEAVQMVLNITNNKR  152 (244)
Q Consensus       106 ~~~~a~~~~p~~~~~~~~la~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~  152 (244)
                      .+++++.++|.....+.++|.++.       ..|+++       +|..++++++..+|+..
T Consensus        94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            777777777777777777777766       566655       55566666777777643

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.45  E-value=5.6e-12  Score=103.05  Aligned_cols=148  Identities=14%  Similarity=0.161  Sum_probs=95.8

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      ++.+|++.+|++.++|+..-.+.+...+++.|..++.++....| ...+|+..+.+...+++.++|+++++.+++..|+.
T Consensus       606 il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f  684 (913)
T KOG0495|consen  606 ILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDF  684 (913)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence            44555555555555555555555555555555555555555444 44555556666666667777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      +..|..+|+++..+++.+.|.+.|...++.-|+.+..|..++.+-...|+...|...++++.-.+|++.
T Consensus       685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence            777777777777777777777777777777777777777777777777777777777777776676643

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.45  E-value=1.6e-11  Score=102.00  Aligned_cols=140  Identities=17%  Similarity=0.165  Sum_probs=118.3

Q ss_pred             ccCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc--------cCHHHHHHHHHHHHh
Q 039523           12 QMISQLEL--RSLARSAYNRGE---YETSKILREAAMALNSLYPDGWFALGAAALKA--------RDVEKALDVFTRAVQ   78 (244)
Q Consensus        12 ~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~   78 (244)
                      .|.+..+|  +..|..+...++   ..+|+.+|+++++.+|+++.++-.++.++...        ++...+.+...+++.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            46666555  566777766544   88999999999999999999999888877654        234566666777666


Q ss_pred             c--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           79 L--DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        79 ~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      .  +|.++.++..+|......|++++|...+++++.++| +...+..+|.++...|++++|++.|++|++++|..+
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            4  777888999999999999999999999999999999 588999999999999999999999999999999965

>PRK15331 chaperone protein SicA; Provisional

Probab=99.45  E-value=4.2e-12  Score=87.58  Aligned_cols=122  Identities=14%  Similarity=0.067  Sum_probs=102.5

Q ss_pred             hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523           45 LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY  124 (244)
Q Consensus        45 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  124 (244)
                      +.++.....+..|.-++..|++++|...|.-....+|.+++.|..+|.|+..+++|++|+..|..+..++++++...+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            34445567888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523          125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEG  167 (244)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  167 (244)
                      |.|+..+|+.+.|+.+|..++. .|.+.........++..+.+
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence            9999999999999999999988 46655444445555554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.44  E-value=1.8e-12  Score=110.04  Aligned_cols=152  Identities=15%  Similarity=0.195  Sum_probs=137.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|-++++++|..+.++..+|..|....+...|..+|+++.++++.+..++-..+..|.+..+++.|...+-.+-+..
T Consensus       477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka  556 (1238)
T KOG1127|consen  477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA  556 (1238)
T ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999977777777


Q ss_pred             CCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           81 PEN--GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        81 p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      |..  ...|..+|..+...++...|+..|+.+++.+|++..+|..+|.+|...|++..|+..|.++..++|.+.
T Consensus       557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence            643  356777999999999999999999999999999999999999999999999999999999999999843

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.43  E-value=5.6e-11  Score=87.57  Aligned_cols=153  Identities=20%  Similarity=0.178  Sum_probs=123.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH---HHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENG---EAWN   88 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~   88 (244)
                      ++..++..|..++..|+|.+|+..|++.+...|.+   +.+.+.+|.+++..|++++|+..+++.++..|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            57889999999999999999999999999998876   46889999999999999999999999999998764   5788


Q ss_pred             HHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHH
Q 039523           89 IIACLHMIKN-----------KSKEAFIAFKEALKLKRNGWQL-----------------WENYSHVALDVGNIGQALEA  140 (244)
Q Consensus        89 ~l~~~~~~~~-----------~~~~A~~~~~~a~~~~p~~~~~-----------------~~~la~~~~~~~~~~~A~~~  140 (244)
                      .+|.++..+.           ...+|+..|+..+...|++..+                 -+.+|..|.+.|.+..|+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            8888865543           3458999999999999987321                 34568889999999999999


Q ss_pred             HHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523          141 VQMVLNITNNKRIDTELLERIVLNLEG  167 (244)
Q Consensus       141 ~~~al~~~p~~~~~~~~l~~~~~~~~~  167 (244)
                      ++.+++..|+.......+..+...+..
T Consensus       164 ~~~v~~~yp~t~~~~~al~~l~~~y~~  190 (203)
T PF13525_consen  164 FQYVIENYPDTPAAEEALARLAEAYYK  190 (203)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            999999999988777777777665553

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.43  E-value=9.1e-13  Score=79.78  Aligned_cols=66  Identities=29%  Similarity=0.503  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCC
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQLDP   81 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p   81 (244)
                      +..|..+|..++..|++++|+..|.++++.+|+++.+++.+|.++...| ++++|++.++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4445555555555555555555555555555555555555555555555 35555555555555444

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.43  E-value=3.3e-11  Score=84.06  Aligned_cols=126  Identities=18%  Similarity=0.120  Sum_probs=107.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIAC   92 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~   92 (244)
                      .+.........++...+...+++.+...|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+.+.++.
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            3444445557899999999999999999988   4677889999999999999999999999987655   457888999


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      ++...|++++|+..++. +...+-.+.++...|.++...|++++|+..|++++
T Consensus        94 ~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999999999999966 33344557788899999999999999999999874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.43  E-value=9.7e-13  Score=79.65  Aligned_cols=66  Identities=33%  Similarity=0.591  Sum_probs=35.2

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN-KSKEAFIAFKEALKLKR  115 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p  115 (244)
                      +.+|..+|.+++..|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4445555555555555555555555555555555555555555555555 45555555555555544

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.43  E-value=3.4e-11  Score=96.66  Aligned_cols=147  Identities=12%  Similarity=-0.034  Sum_probs=119.7

Q ss_pred             hHHHHHHhhcc---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc----CHHHHHHHHHH
Q 039523            3 PAMKKLWKFQM---ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR----DVEKALDVFTR   75 (244)
Q Consensus         3 ~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~   75 (244)
                      ..+.++.+..|   +..+.....|..+...|++++|...+++++..+|++..++.. +..+...|    ....+.+.+..
T Consensus        27 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~  105 (355)
T cd05804          27 AKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL  105 (355)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc
Confidence            34555555544   345667788899999999999999999999999999877764 44544444    44455555544


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           76 AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        76 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ....+|....++..+|.++..+|++++|...++++++..|+++.++..+|.++...|++++|+.++.+++...|.
T Consensus       106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            445667777888889999999999999999999999999999999999999999999999999999999998874

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=99.43  E-value=1.4e-11  Score=98.08  Aligned_cols=144  Identities=13%  Similarity=0.044  Sum_probs=101.6

Q ss_pred             CchHHHHHH---hhccCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHH
Q 039523            1 MMPAMKKLW---KFQMISQLELRSLARSAYNR---------GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEK   68 (244)
Q Consensus         1 Ai~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~   68 (244)
                      |+.+|.+++   .++|+.+.++..++.+++..         .+..+|....+++++++|.++.+...+|.+....++++.
T Consensus       277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~  356 (458)
T PRK11906        277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKV  356 (458)
T ss_pred             HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhh
Confidence            456778888   77888888888888777653         234566777777778888888888888887777777888


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 039523           69 ALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV-ALDVGNIGQALEAVQMV  144 (244)
Q Consensus        69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~a  144 (244)
                      |...|++++.++|+.+.+|+..|.++...|+.++|...++++++++|....+-...-.+ .+.....+.|+..|-+-
T Consensus       357 a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        357 SHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence            88888888888888888888888888888888888888888888877654433322222 23334556666655443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.43  E-value=1.2e-10  Score=87.83  Aligned_cols=154  Identities=15%  Similarity=0.108  Sum_probs=131.1

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH---HHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHH
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDG---WFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAW   87 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~   87 (244)
                      .++..++..|..++..|++++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++..|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            367889999999999999999999999999999988755   4899999999999999999999999999876   4578


Q ss_pred             HHHHHHHHHcC---------------C---hHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcC
Q 039523           88 NIIACLHMIKN---------------K---SKEAFIAFKEALKLKRNGWQL-----------------WENYSHVALDVG  132 (244)
Q Consensus        88 ~~l~~~~~~~~---------------~---~~~A~~~~~~a~~~~p~~~~~-----------------~~~la~~~~~~~  132 (244)
                      +.+|.++...+               +   ..+|+..|++.++..|++..+                 -...|..|.+.|
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~  189 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG  189 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888764443               1   357889999999999987321                 245678899999


Q ss_pred             CHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523          133 NIGQALEAVQMVLNITNNKRIDTELLERIVLNLEG  167 (244)
Q Consensus       133 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  167 (244)
                      .+..|+.-++.+++..|+.+...+.+..+...+..
T Consensus       190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~  224 (243)
T PRK10866        190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ  224 (243)
T ss_pred             chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            99999999999999999988888888888777653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.43  E-value=1.6e-11  Score=87.96  Aligned_cols=103  Identities=21%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC   92 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~   92 (244)
                      ...++.+|.++...|++++|+..|++++...|+.   +.++.++|.++...|++++|+..+++++.++|.....+.++|.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            6778999999999999999999999999987753   4589999999999999999999999999999999999999999


Q ss_pred             HHH-------HcCChH-------HHHHHHHHHHhcCCCCH
Q 039523           93 LHM-------IKNKSK-------EAFIAFKEALKLKRNGW  118 (244)
Q Consensus        93 ~~~-------~~~~~~-------~A~~~~~~a~~~~p~~~  118 (244)
                      ++.       ..|+++       +|+.++++++..+|.+.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            888       777876       55566666777777653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.42  E-value=1.2e-11  Score=94.12  Aligned_cols=165  Identities=15%  Similarity=0.124  Sum_probs=117.6

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHH------------HHHHHHHccCHHHH
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFA------------LGAAALKARDVEKA   69 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~g~~~~A   69 (244)
                      |..++.+-++..++.+.++.++..++..|+.+.++...+++++++|++...+-.            -+......++|.++
T Consensus       209 I~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c  288 (504)
T KOG0624|consen  209 IHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC  288 (504)
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            344455555555666666666666666666666666666666666665433211            12223445666666


Q ss_pred             HHHHHHHHhcCCCcHHH----HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           70 LDVFTRAVQLDPENGEA----WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        70 ~~~~~~a~~~~p~~~~~----~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      ++..++.++.+|..+.+    .-.+..|+..-|++.+|+..+.+++..+|++..++...+.+|..-..|+.|+.-|+++.
T Consensus       289 le~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~  368 (504)
T KOG0624|consen  289 LEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL  368 (504)
T ss_pred             HHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            66666666666664432    33456778888999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCchhhHHHHHHHHHHhc
Q 039523          146 NITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       146 ~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      +.++++......+.+..+..+
T Consensus       369 e~n~sn~~~reGle~Akrlkk  389 (504)
T KOG0624|consen  369 ELNESNTRAREGLERAKRLKK  389 (504)
T ss_pred             hcCcccHHHHHHHHHHHHHHH
Confidence            999997776666665554433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.40  E-value=1.7e-11  Score=100.28  Aligned_cols=148  Identities=15%  Similarity=0.143  Sum_probs=126.1

Q ss_pred             CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHcc
Q 039523            1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKAR   64 (244)
Q Consensus         1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g   64 (244)
                      |+.+|++|+.+        +|.-+.++.+||..|...|++++|..++++++++.        |.-+..+..++.++...+
T Consensus       260 Av~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~  339 (508)
T KOG1840|consen  260 AVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN  339 (508)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc
Confidence            56788888886        45557789999999999999999999999999864        333457889999999999


Q ss_pred             CHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHH
Q 039523           65 DVEKALDVFTRAVQLD--------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--------RNGWQLWENYSHVA  128 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~  128 (244)
                      ++++|..++.+++++-        |..+..+.++|.++..+|++.+|.+.+++++.+.        +.....+.++|..|
T Consensus       340 ~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~  419 (508)
T KOG1840|consen  340 EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY  419 (508)
T ss_pred             chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence            9999999999988752        2346789999999999999999999999999874        23356788999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhc
Q 039523          129 LDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~~  148 (244)
                      ...+++.+|...|.+++.+.
T Consensus       420 ~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  420 EELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             HHhcccchHHHHHHHHHHHH
Confidence            99999999999999998764

>PRK15331 chaperone protein SicA; Provisional

Probab=99.40  E-value=1.4e-11  Score=84.96  Aligned_cols=108  Identities=16%  Similarity=0.132  Sum_probs=100.2

Q ss_pred             HhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523            9 WKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN   88 (244)
Q Consensus         9 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~   88 (244)
                      ..+.++.-+..+..|..++..|++++|...|+-+...+|.++..|..||.++...++|++|+..|..+..+++++|...+
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence            33456667888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           89 IIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      ..|.|+..+|+.+.|..+|..++. .|.+
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            999999999999999999999998 3543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.40  E-value=2.4e-11  Score=98.76  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=118.8

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      .|+++.+...+|..+...|+.++|...++++++..| ++.....++.+  ..++.+++++.+++.++..|+++..+..+|
T Consensus       259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lg  335 (398)
T PRK10747        259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLG  335 (398)
T ss_pred             HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            567999999999999999999999999999999544 66554444443  459999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      .++...|++++|.++|+++++..|++. .+..++.++...|+.++|..+|++++.+.
T Consensus       336 rl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        336 QLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            999999999999999999999999864 46689999999999999999999998764

>PRK11906 transcriptional regulator; Provisional

Probab=99.39  E-value=4.2e-11  Score=95.35  Aligned_cols=132  Identities=12%  Similarity=0.151  Sum_probs=120.2

Q ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHH---hhCCCChhHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCCcH
Q 039523           20 RSLARSAYNRG---EYETSKILREAAM---ALNSLYPDGWFALGAAALKA---------RDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus        20 ~~la~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      +..|...+..+   ..+.|...|.+++   ..+|+...++..++.|++..         .+..+|.+..+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            66777766554   4567888999999   99999999999999998765         346788999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      .++..+|.+....++++.|...|++++.++|+.+.+|+..|.++.-.|+.++|..+++++++++|..
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999984

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.39  E-value=2.6e-11  Score=98.93  Aligned_cols=146  Identities=14%  Similarity=0.152  Sum_probs=138.4

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      ...++.++..|++++.+...|..+...|+-++|..+.+.++..++.+...|..+|.++...++|++|+++|..|++++|+
T Consensus        28 K~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d  107 (700)
T KOG1156|consen   28 KLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD  107 (700)
T ss_pred             HHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence            45667777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           83 NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      |...|..++.....+++++-....-.+.++..|.....|..++..+...|++..|....+......
T Consensus       108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999998887776654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.38  E-value=2.6e-11  Score=104.83  Aligned_cols=134  Identities=12%  Similarity=0.055  Sum_probs=123.9

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-------
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG-------   84 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-------   84 (244)
                      +|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++...  .++...+.+.       
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence            7889999999999999999999999999999999999999999999999999988887766  6666555554       


Q ss_pred             ------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           85 ------------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        85 ------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                                  .+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..+... +.++|+.++.+|+...
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence                        89999999999999999999999999999999999999999999999 9999999999998764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.38  E-value=1.3e-10  Score=92.76  Aligned_cols=121  Identities=19%  Similarity=0.241  Sum_probs=110.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKS  100 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  100 (244)
                      .+-..+...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            4455666688999999999999998874   5667899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523          101 KEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus       101 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                      +.|+...++++...|++...|+.|+.+|...|+++.|+..+..+
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999777644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.37  E-value=2.6e-12  Score=80.92  Aligned_cols=80  Identities=21%  Similarity=0.358  Sum_probs=45.2

Q ss_pred             cCCHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 039523           29 RGEYETSKILREAAMALNSL--YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIA  106 (244)
Q Consensus        29 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  106 (244)
                      +|+++.|+..++++++..|.  +...++.+|.++++.|++++|+..+++ .+.+|.++...+.+|.++..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45566666666666666553  234455556666666666666666655 555555555555556666666666666665


Q ss_pred             HHH
Q 039523          107 FKE  109 (244)
Q Consensus       107 ~~~  109 (244)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.36  E-value=2.6e-11  Score=100.65  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=102.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHccCHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRG--------EYETSKILREAAMAL--NSLYPDGWFALGAAALKARDVEKAL   70 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~   70 (244)
                      |+.+|++|++++|+++.++..++.++....        +...+.....+++..  +|..+.++..+|..+...|++++|.
T Consensus       361 A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~  440 (517)
T PRK10153        361 ASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAY  440 (517)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHH
Confidence            578999999999999999999988876542        244556666666664  6777888999999999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523           71 DVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ  119 (244)
Q Consensus        71 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  119 (244)
                      ..+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus       441 ~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        441 QAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999999 5889999999999999999999999999999998764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=6.4e-11  Score=92.25  Aligned_cols=133  Identities=15%  Similarity=0.155  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLY---------------PDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      ......|+.+++.|+|..|...|++++..-+..               ..++.+++.|+.++++|.+|+..+++++.++|
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~  288 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP  288 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            345567899999999999999999988753311               23677899999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhcC
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA-LEAVQMVLNITN  149 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~p  149 (244)
                      +|..+++..|.++..+|+|+.|+..|++++++.|++-.+...+..+..+..++.+. ...|.+.+...+
T Consensus       289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999988888888887776665554 667777766543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.35  E-value=1.6e-11  Score=101.90  Aligned_cols=116  Identities=23%  Similarity=0.196  Sum_probs=110.7

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHH--HHHHHHhcC
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALD--VFTRAVQLD   80 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~   80 (244)
                      .++.++-.++|..+..|+..|..+...|++.+|...|..++.++|+++.....+|.++.+.|+..-|..  .+..+++++
T Consensus       671 ~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d  750 (799)
T KOG4162|consen  671 SCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD  750 (799)
T ss_pred             HHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence            467788888999999999999999999999999999999999999999999999999999999888888  999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW  118 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  118 (244)
                      |.++.+|+.+|.++...|+.++|.++|..++++.+.+|
T Consensus       751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            99999999999999999999999999999999988765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.34  E-value=6.9e-12  Score=74.90  Aligned_cols=62  Identities=27%  Similarity=0.527  Sum_probs=33.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      +|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555555555555555555555555555555555555555555544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.34  E-value=5.8e-12  Score=79.29  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=73.1

Q ss_pred             ccCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039523           63 ARDVEKALDVFTRAVQLDPE--NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA  140 (244)
Q Consensus        63 ~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~  140 (244)
                      .|+++.|+..++++++.+|.  +...++.+|.+++..|++++|+..+++ ...+|.+....+.+|.++..+|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  567788899999999999999999999 888888889999999999999999999999


Q ss_pred             HHHH
Q 039523          141 VQMV  144 (244)
Q Consensus       141 ~~~a  144 (244)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.34  E-value=1.1e-11  Score=74.06  Aligned_cols=64  Identities=31%  Similarity=0.630  Sum_probs=38.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      .+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4556666666666666666666666666666666666666666666666666666666666553

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.33  E-value=1.7e-10  Score=87.74  Aligned_cols=102  Identities=17%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             hHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 039523           51 DGWFALGAAA-LKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWEN  123 (244)
Q Consensus        51 ~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~  123 (244)
                      ..++..|..+ +..|+|++|+..|++.++..|++   +.+++.+|.+++..|++++|+..|++++...|++   +.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3444444443 33455555555555555555544   3455555555555555555555555555554442   444555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523          124 YSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus       124 la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      +|.++...|++++|...|+++++..|+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            55555555555555555555555555543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=9.9e-11  Score=91.20  Aligned_cols=154  Identities=17%  Similarity=0.246  Sum_probs=124.3

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH---------------------------------
Q 039523            6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDG---------------------------------   52 (244)
Q Consensus         6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------------------------------   52 (244)
                      -.-...-|++...+..+|.+++..|++++|+..|+++...+|.+...                                 
T Consensus       222 le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~  301 (564)
T KOG1174|consen  222 LHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS  301 (564)
T ss_pred             HHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh
Confidence            33445568888899999999999999999999999998888875443                                 


Q ss_pred             -HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           53 -WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        53 -~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                       |+.-+...+..+++..|+.+-+++++.+|++..+++..|.++...|+.++|+-.|+.+..+.|....+|..+..+|...
T Consensus       302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~  381 (564)
T KOG1174|consen  302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ  381 (564)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence             3344445556677888888888888888988888888899999999999999999999999888888888888889888


Q ss_pred             CCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523          132 GNIGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus       132 ~~~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      |++.+|...-..+++..|.+...+..++
T Consensus       382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  382 KRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             chHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            8888888888888888877665555543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.32  E-value=1.8e-10  Score=87.54  Aligned_cols=105  Identities=11%  Similarity=0.069  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---cHHHHH
Q 039523           16 QLELRSLARSA-YNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPE---NGEAWN   88 (244)
Q Consensus        16 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~   88 (244)
                      ....+..|..+ +..|+|++|+..|+..++..|++   +.+++.+|.+++..|++++|+..|.++++..|+   .+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46778888876 66799999999999999999988   479999999999999999999999999988876   578999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523           89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQL  120 (244)
Q Consensus        89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  120 (244)
                      .+|.++..+|++++|...|+++++..|++..+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            99999999999999999999999999998654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.30  E-value=1.9e-10  Score=99.59  Aligned_cols=152  Identities=16%  Similarity=0.097  Sum_probs=124.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-------------------hHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP-------------------DGWFALGAAAL   61 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~la~~~~   61 (244)
                      |++..+.+++.+|+....++.+|.++++.+++..+...  .++...+.+.                   .+++.+|.||.
T Consensus        50 ai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Yd  127 (906)
T PRK14720         50 AKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYA  127 (906)
T ss_pred             HHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            35667788888999999999999999999988877665  5555555444                   89999999999


Q ss_pred             HccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------------CCCCHHH-
Q 039523           62 KARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--------------------KRNGWQL-  120 (244)
Q Consensus        62 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------------~p~~~~~-  120 (244)
                      ++|+.++|...|+++++.+|+++.+..++|..+... +.++|+.++.+|+..                    +|.+... 
T Consensus       128 k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f  206 (906)
T PRK14720        128 KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFF  206 (906)
T ss_pred             HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHH
Confidence            999999999999999999999999999999999988 999999998888765                    2333222 


Q ss_pred             -------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523          121 -------------------WENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT  155 (244)
Q Consensus       121 -------------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  155 (244)
                                         +.-+-.+|...++|++++..++.+++++|++....
T Consensus       207 ~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~  260 (906)
T PRK14720        207 LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR  260 (906)
T ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence                               22223667788899999999999999999855443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.30  E-value=1.3e-10  Score=81.11  Aligned_cols=108  Identities=24%  Similarity=0.276  Sum_probs=93.2

Q ss_pred             hHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523            3 PAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus         3 ~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      ..+++.++.+|++   ..+.+.+|.+++..|++++|+..|+.++...|+.   +.+...+|.+++..|++++|+..++. 
T Consensus        32 ~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-  110 (145)
T PF09976_consen   32 AAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-  110 (145)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-
Confidence            3467777778888   5678889999999999999999999999988655   35788999999999999999999976 


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523           77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL  111 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  111 (244)
                      +...+-.+.++..+|.++...|++++|+..|++++
T Consensus       111 ~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  111 IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            44455567788899999999999999999999874

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.29  E-value=3.2e-11  Score=102.71  Aligned_cols=150  Identities=15%  Similarity=0.171  Sum_probs=138.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY--PDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |-.+|++|.++||.++.++...+..|....+++.|.....++-+..|..  ...|..+|..|...++..+|+..++.+++
T Consensus       511 A~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR  590 (1238)
T KOG1127|consen  511 AKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR  590 (1238)
T ss_pred             HHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc
Confidence            4579999999999999999999999999999999999987777777644  34677799999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|.|.+|+..+...+.....
T Consensus       591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~  662 (1238)
T KOG1127|consen  591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL  662 (1238)
T ss_pred             CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988876544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.29  E-value=3.6e-10  Score=87.43  Aligned_cols=153  Identities=14%  Similarity=0.020  Sum_probs=111.7

Q ss_pred             HHHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc--CHHHHHHHHHHHHhc
Q 039523            4 AMKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR--DVEKALDVFTRAVQL   79 (244)
Q Consensus         4 ~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~   79 (244)
                      .++.|++.  .-++.+.......++...++++.|.+.++.+.+.+.+..-+...-+.+.+..|  ++.+|...|+.....
T Consensus       117 ~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~  196 (290)
T PF04733_consen  117 DYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK  196 (290)
T ss_dssp             HHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence            35566665  22467777777788888888888888888888777766555555555555555  588888888888777


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhcCCchhhHH
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI-GQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      .+.++..+..++.++..+|+|++|...+.+++..+|+++.++.+++.+....|+. +.+.+++.+....+|++++...
T Consensus       197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence            7788888888888888888888888888888888888888888888888888887 5566777777777888765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.27  E-value=2.1e-09  Score=81.22  Aligned_cols=143  Identities=11%  Similarity=0.046  Sum_probs=119.9

Q ss_pred             CchHHHHHHhhccCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHcc----------
Q 039523            1 MMPAMKKLWKFQMISQLEL---RSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKAR----------   64 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g----------   64 (244)
                      |+..|++++...|..+.+.   +.+|.+++..+++++|+..+++.++..|+++   .+++.+|.++...+          
T Consensus        51 Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~  130 (243)
T PRK10866         51 AITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGV  130 (243)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCC
Confidence            5788999999999886654   8999999999999999999999999998875   57888888764443          


Q ss_pred             -----C---HHHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q 039523           65 -----D---VEKALDVFTRAVQLDPENGE-----------------AWNIIACLHMIKNKSKEAFIAFKEALKLKRNG--  117 (244)
Q Consensus        65 -----~---~~~A~~~~~~a~~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--  117 (244)
                           +   ..+|+..+++.++..|++..                 --+..|..|.+.|.|..|+.-++.+++..|+.  
T Consensus       131 ~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~  210 (243)
T PRK10866        131 DRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA  210 (243)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence                 1   35788999999999998742                 12456778999999999999999999998875  


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523          118 -WQLWENYSHVALDVGNIGQALEAVQM  143 (244)
Q Consensus       118 -~~~~~~la~~~~~~~~~~~A~~~~~~  143 (244)
                       .+++..++..+..+|..++|......
T Consensus       211 ~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        211 TRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence             67788999999999999999876644

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.26  E-value=2.2e-09  Score=88.98  Aligned_cols=155  Identities=17%  Similarity=0.095  Sum_probs=121.9

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-----CHHHHHHHHHHH
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-----DVEKALDVFTRA   76 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a   76 (244)
                      ++++++.-..-++...++-..|.++...|++++|...|+..+..+|++...+..+..+..-..     +.+.-...|+..
T Consensus        24 L~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l  103 (517)
T PF12569_consen   24 LEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDEL  103 (517)
T ss_pred             HHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHH
Confidence            444444444456777888899999999999999999999999999999988888877762222     334444444432


Q ss_pred             HhcCC---------------------------------------------------------------------------
Q 039523           77 VQLDP---------------------------------------------------------------------------   81 (244)
Q Consensus        77 ~~~~p---------------------------------------------------------------------------   81 (244)
                      ....|                                                                           
T Consensus       104 ~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~  183 (517)
T PF12569_consen  104 AEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD  183 (517)
T ss_pred             HHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence            22110                                                                           


Q ss_pred             ----Cc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523           82 ----EN----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        82 ----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                          ..    ..+++.++..+...|++++|+.+++++|...|..++.+...|.++...|++.+|...++.+..+++.+..
T Consensus       184 ~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy  263 (517)
T PF12569_consen  184 DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY  263 (517)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence                01    1356788999999999999999999999999999999999999999999999999999999999988654


Q ss_pred             hHH
Q 039523          154 DTE  156 (244)
Q Consensus       154 ~~~  156 (244)
                      .-.
T Consensus       264 iNs  266 (517)
T PF12569_consen  264 INS  266 (517)
T ss_pred             HHH
Confidence            433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.24  E-value=6.1e-10  Score=74.11  Aligned_cols=96  Identities=22%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPE---NGEAWNII   90 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l   90 (244)
                      .+++.+|.++-..|+.++|+..|++++......   ..++..+|..+...|++++|+..+++.+...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            456777777777788888888888777764433   356777777777777777777777777777676   66666777


Q ss_pred             HHHHHHcCChHHHHHHHHHHHh
Q 039523           91 ACLHMIKNKSKEAFIAFKEALK  112 (244)
Q Consensus        91 ~~~~~~~~~~~~A~~~~~~a~~  112 (244)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            7777777777777777766553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=2.3e-10  Score=89.19  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCC----c-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPE----N-----------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      ....|..+++.|+|..|...|++++..-..    +           ..++.+++.|+.++++|.+|+..+.+++.++|++
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            346788999999999999999998875331    1           2478999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523          118 WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEG  167 (244)
Q Consensus       118 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  167 (244)
                      ..+++..|.++..+|+++.|+..|++++++.|++......+..+...+.+
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987777777776666553

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.23  E-value=3.4e-10  Score=81.36  Aligned_cols=98  Identities=12%  Similarity=0.122  Sum_probs=85.2

Q ss_pred             CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523           48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY  124 (244)
Q Consensus        48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  124 (244)
                      ....+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|++...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            456678999999999999999999999999887653   46899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 039523          125 SHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~al  145 (244)
                      |.++...|+...+...+..++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~  133 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAE  133 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHH
Confidence            999998877655554444444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.19  E-value=2.2e-10  Score=94.83  Aligned_cols=134  Identities=15%  Similarity=0.238  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHH----------------------------HHHHHHHHHccCHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGW----------------------------FALGAAALKARDVE   67 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------------------------~~la~~~~~~g~~~   67 (244)
                      ...|-....+|...|+..+|.....+-++.+ .++..|                            ..+|......++|.
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~-~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs  502 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELEKD-PDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS  502 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhcCC-CcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence            4555566666666666666666666666632 233333                            33444445568999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           68 KALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        68 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      ++.++++..++++|-....|+.+|.+..+.+++..|.++|..++.++|++...|.+++..|...|+..+|...+.++++.
T Consensus       503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC  582 (777)
T ss_pred             HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC
Q 039523          148 TNN  150 (244)
Q Consensus       148 ~p~  150 (244)
                      +-+
T Consensus       583 n~~  585 (777)
T KOG1128|consen  583 NYQ  585 (777)
T ss_pred             CCC
Confidence            855

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=5e-10  Score=87.24  Aligned_cols=136  Identities=18%  Similarity=0.274  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-----------
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG-----------   84 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----------   84 (244)
                      ..+-...+.++...|+++.|...--..+++++.+..+++..|.++...++.+.|+..|++++.++|+..           
T Consensus       169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~  248 (486)
T KOG0550|consen  169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK  248 (486)
T ss_pred             hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence            345567788999999999999999999999999999999999999999999999999999999999764           


Q ss_pred             -HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           85 -EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG----WQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        85 -~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                       ..|-.-|.-.++.|++..|.++|..++.++|++    ..+|.+.+.+...+|+..+|+.....++.++|..
T Consensus       249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence             356677888999999999999999999999976    5678999999999999999999999999999883

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.17  E-value=1.6e-10  Score=69.56  Aligned_cols=65  Identities=26%  Similarity=0.427  Sum_probs=38.7

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           27 YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        27 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      +..|++++|+..|++++..+|++..++..+|.++++.|++++|...+++++..+|+++.++..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            34556666666666666666666666666666666666666666666666666666555554444

...

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.17  E-value=1.2e-09  Score=89.56  Aligned_cols=139  Identities=17%  Similarity=0.227  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      ..++..+.-.+..++|.+.+...+..++..|+++..+-..|..+...|+-++|..+...++..++.+..+|.-+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            45666677778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523           97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDT  155 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  155 (244)
                      .++|++|+++|+.|+...|++..+|..++.+-.++|+++.......+.++..|.....+
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w  146 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASW  146 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999854433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.17  E-value=5.3e-09  Score=77.12  Aligned_cols=138  Identities=20%  Similarity=0.175  Sum_probs=110.3

Q ss_pred             CchHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHcc----------
Q 039523            1 MMPAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKAR----------   64 (244)
Q Consensus         1 Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g----------   64 (244)
                      |+..|++++...|.+   +.+.+.+|.+++..|+++.|+..+++.++..|+++   .+++.+|.+++...          
T Consensus        24 Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~  103 (203)
T PF13525_consen   24 AIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQ  103 (203)
T ss_dssp             HHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccCh
Confidence            567888888887764   68899999999999999999999999999999875   47888888876543          


Q ss_pred             -CHHHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHH
Q 039523           65 -DVEKALDVFTRAVQLDPENGE-----------------AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW---QLWEN  123 (244)
Q Consensus        65 -~~~~A~~~~~~a~~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~  123 (244)
                       ...+|+..|+..+...|++..                 --+.+|..|.+.|.+..|+..++.+++..|+..   .++..
T Consensus       104 ~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~  183 (203)
T PF13525_consen  104 TSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR  183 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence             345899999999999998752                 234578889999999999999999999999874   56888


Q ss_pred             HHHHHHHcCCHHHHH
Q 039523          124 YSHVALDVGNIGQAL  138 (244)
Q Consensus       124 la~~~~~~~~~~~A~  138 (244)
                      ++.++..+|..+.|.
T Consensus       184 l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  184 LAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHTT-HHHHH
T ss_pred             HHHHHHHhCChHHHH
Confidence            899999999988543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=1.8e-09  Score=82.92  Aligned_cols=142  Identities=14%  Similarity=0.092  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc--------------CC-
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL--------------DP-   81 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------~p-   81 (244)
                      .....+|.+++..|+|++|...|+-+...+.-+...+.++|.+++-.|.|.+|.....++-+.              +. 
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE  137 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE  137 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence            556778999999999999999999999887778889999999999999999999887765321              11 


Q ss_pred             -----------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           82 -----------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        82 -----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                                 +..+-...++.+.+..-+|.+|++.|.+.+.-+|+....-.+++.||.++.-++-+.+.+.-.++..|+
T Consensus       138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence                       112234567777888889999999999999999999888899999999999999999999999999999


Q ss_pred             chhhHHHH
Q 039523          151 KRIDTELL  158 (244)
Q Consensus       151 ~~~~~~~l  158 (244)
                      .+++....
T Consensus       218 StiA~NLk  225 (557)
T KOG3785|consen  218 STIAKNLK  225 (557)
T ss_pred             cHHHHHHH
Confidence            77655443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=8.7e-10  Score=82.77  Aligned_cols=147  Identities=16%  Similarity=0.090  Sum_probs=125.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh--
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ--   78 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--   78 (244)
                      ||+++.--.+.+|.+...+..+|.+|+...+|..|..+|++.-...|.........+..+.+.+.+..|+........  
T Consensus        29 aI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~  108 (459)
T KOG4340|consen   29 AIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNP  108 (459)
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCH
Confidence            355556666668989999999999999999999999999999999999888888889999999988888876653322  


Q ss_pred             --------------c--------------CC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           79 --------------L--------------DP--ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        79 --------------~--------------~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                                    .              -|  +++++.++.|.+.++.|+++.|++-|+.+++...-.+.+-++++.++
T Consensus       109 ~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH  188 (459)
T KOG4340|consen  109 ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH  188 (459)
T ss_pred             HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence                          1              13  45678889999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhh
Q 039523          129 LDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~  147 (244)
                      ...|++..|+.+..+.++.
T Consensus       189 y~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  189 YSSRQYASALKHISEIIER  207 (459)
T ss_pred             HhhhhHHHHHHHHHHHHHh
Confidence            9999999999887777654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.14  E-value=2e-10  Score=69.16  Aligned_cols=66  Identities=23%  Similarity=0.287  Sum_probs=46.5

Q ss_pred             HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523           61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH  126 (244)
Q Consensus        61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  126 (244)
                      +..|++++|++.|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777776666555543

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.13  E-value=6.1e-10  Score=68.05  Aligned_cols=66  Identities=23%  Similarity=0.392  Sum_probs=39.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN   88 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~   88 (244)
                      ..+++..+++++|+.++++++..+|+++..+..+|.++...|++++|.+.++++++.+|+++.+..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            345556666666666666666666666666666666666666666666666666666665555443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.13  E-value=4.6e-10  Score=85.76  Aligned_cols=108  Identities=18%  Similarity=0.156  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN   98 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~   98 (244)
                      +-..|+.|+.+|+|++|+++|.+++..+|.++..+.+.|.+|++.+.|..|...+..++.++.....+|...+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999999999999999999999999999888889999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523           99 KSKEAFIAFKEALKLKRNGWQLWENYSH  126 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~  126 (244)
                      ...+|.+.++.++++.|++.+..-.++.
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~  207 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLAR  207 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence            9999999999999999987665544443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.13  E-value=4.9e-09  Score=69.78  Aligned_cols=97  Identities=21%  Similarity=0.163  Sum_probs=87.7

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHH
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN---GWQLWEN  123 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~  123 (244)
                      +.+++.+|.++...|+.++|+..|++++......   ..+++.+|..+...|++++|+..+++++...|+   +..+...
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            3578899999999999999999999999976544   568999999999999999999999999999888   7788888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Q 039523          124 YSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus       124 la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      ++.++...|+.++|+..+-.++.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999888775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.12  E-value=5.4e-09  Score=77.97  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIAC   92 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~   92 (244)
                      .+..|..++..|+|..|...|...++..|++   +.++++||.+++..|++++|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6777888888888888888888888887765   4577888888888888888888888887776644   577888888


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523           93 LHMIKNKSKEAFIAFKEALKLKRNGWQLW  121 (244)
Q Consensus        93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  121 (244)
                      +...+|+.++|...|+++++..|+...+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            88888888888888888888888765543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.12  E-value=2.1e-09  Score=85.89  Aligned_cols=109  Identities=20%  Similarity=0.143  Sum_probs=98.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..++..++++.|+++.++++...
T Consensus       188 ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls  264 (395)
T PF09295_consen  188 AIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS  264 (395)
T ss_pred             HHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            45677777766654   677799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALK  112 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  112 (244)
                      |++...|+.++.+|...|++++|+..+..+-.
T Consensus       265 P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  265 PSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            99999999999999999999999987765433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.10  E-value=9e-10  Score=67.29  Aligned_cols=68  Identities=28%  Similarity=0.347  Sum_probs=44.8

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523           57 GAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY  124 (244)
Q Consensus        57 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  124 (244)
                      ..++.+.+++++|++++++++..+|+++..|...|.++...|++++|...++++++..|+++.+....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            34566666666666666666666666666666666666666666666666666666666665554433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=3.7e-09  Score=74.90  Aligned_cols=99  Identities=20%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           20 RSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        20 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      -.=|+-++..|+|++|...|..++...|..+.     .+.+.|.+.++++.++.|+..+.+++.++|.+..++...+.+|
T Consensus        99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay  178 (271)
T KOG4234|consen   99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY  178 (271)
T ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence            33455555555555555555555555554321     3445555555555555555555555555555555555555555


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCH
Q 039523           95 MIKNKSKEAFIAFKEALKLKRNGW  118 (244)
Q Consensus        95 ~~~~~~~~A~~~~~~a~~~~p~~~  118 (244)
                      .++.++++|+.-|.+.+..+|...
T Consensus       179 ek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HhhhhHHHHHHHHHHHHHhCcchH
Confidence            555555555555555555555443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.07  E-value=1.1e-08  Score=69.37  Aligned_cols=85  Identities=24%  Similarity=0.250  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH---HHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENG---EAWN   88 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~   88 (244)
                      .+..++.-|...+..|+|++|++.|+......|..   ..+...+|.+++..|++++|+..+++-++++|+++   .+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            46677888888888888888888888888877654   35677888888888888888888888888887664   4667


Q ss_pred             HHHHHHHHcCC
Q 039523           89 IIACLHMIKNK   99 (244)
Q Consensus        89 ~l~~~~~~~~~   99 (244)
                      ..|.+++.+..
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            77777766554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=3.9e-09  Score=74.79  Aligned_cols=111  Identities=18%  Similarity=0.154  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENG-----EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV  127 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~  127 (244)
                      +-.=|.-++..|+|.+|..-|..++...|..+     -.+.+.|.+..+++.++.|+..+.++++++|.+..++...|.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            34457788999999999999999999999654     4678899999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523          128 ALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       128 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      |.+...+++|+..|++.++.+|........+.++-.
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~  213 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPP  213 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence            999999999999999999999996554444444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.05  E-value=2.3e-08  Score=82.96  Aligned_cols=134  Identities=17%  Similarity=0.124  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      .+++.+|..|-..|++++|+.+.+++|...|..+..++..|.++-+.|++.+|.+.++.+-.+++.+-..-...+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            35588899999999999999999999999999999999999999999999999999999999999999998999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           97 KNKSKEAFIAFKEALKLKRN--G-------WQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .|+.++|.+.+..-.+.+.+  .       .......|.+|...|++..|+..|..+.++..+
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD  337 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999998766554421  1       223345699999999999999999988876543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.04  E-value=4.3e-09  Score=81.48  Aligned_cols=139  Identities=17%  Similarity=0.107  Sum_probs=112.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      ++......|.++...|++++|+..+.+.     .+.........+++..++++.|.+.++.+.+.+.+..-+....+++.
T Consensus       101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~  175 (290)
T PF04733_consen  101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN  175 (290)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            3455667778888899999999888764     56777778889999999999999999999999887776666666676


Q ss_pred             HHcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523           95 MIKN--KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus        95 ~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                      ...|  .+.+|...|++.....+.++..+..++.++..+|++++|...+.+++..+|+++..+..+
T Consensus       176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl  241 (290)
T PF04733_consen  176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL  241 (290)
T ss_dssp             HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            6666  599999999999888888999999999999999999999999999999999866544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.04  E-value=1.2e-08  Score=79.21  Aligned_cols=167  Identities=16%  Similarity=0.077  Sum_probs=116.3

Q ss_pred             chHHHHHHhhc-----c-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----hhHHHHHHHHHHHc-cCHHH
Q 039523            2 MPAMKKLWKFQ-----M-ISQLELRSLARSAYNRGEYETSKILREAAMALNSL--Y----PDGWFALGAAALKA-RDVEK   68 (244)
Q Consensus         2 i~~~~~al~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~-g~~~~   68 (244)
                      ..+|.++....     + .....+...+.++... ++++|+.++++++...-.  .    ..++..+|.+|... |++++
T Consensus        55 ~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~  133 (282)
T PF14938_consen   55 AEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEK  133 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            45566665542     1 1244556666666555 899999999999886421  1    34678889999888 99999


Q ss_pred             HHHHHHHHHhcCC--Cc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHH
Q 039523           69 ALDVFTRAVQLDP--EN----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLWENYSHVALDVGNIG  135 (244)
Q Consensus        69 A~~~~~~a~~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~~~~~  135 (244)
                      |+++|++++....  +.    ..++..+|.++...|+|++|++.|++.....-++       ...+...+.|+...||..
T Consensus       134 Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v  213 (282)
T PF14938_consen  134 AIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV  213 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHH
Confidence            9999999987632  11    3467788999999999999999999887653211       234566788889999999


Q ss_pred             HHHHHHHHHHhhcCC--chhhHHHHHHHHHHhcccc
Q 039523          136 QALEAVQMVLNITNN--KRIDTELLERIVLNLEGRT  169 (244)
Q Consensus       136 ~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~  169 (244)
                      .|...+++....+|.  .+.....+..++..+++..
T Consensus       214 ~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D  249 (282)
T PF14938_consen  214 AARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD  249 (282)
T ss_dssp             HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence            999999999988886  3445667777777777543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.02  E-value=1.5e-09  Score=83.02  Aligned_cols=114  Identities=18%  Similarity=0.114  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG  132 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~  132 (244)
                      .-..|.-|+++|.|++|+.||.+++..+|.++..+.+.+.+|++.+++..|...+..++.++.....+|...+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          133 NIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       133 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      +.++|...++.++++.|+.......+..+..-.+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E  213 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRE  213 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHh
Confidence            9999999999999999996554444554444333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.02  E-value=1.9e-08  Score=72.33  Aligned_cols=154  Identities=13%  Similarity=-0.022  Sum_probs=125.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL   93 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   93 (244)
                      ..+..++..|..|-..|-+.-|+.-|.+++.+.|+-+.++..+|..+...|+|+.|.+.|+..++++|....+..+.|..
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccc
Q 039523           94 HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGR  168 (244)
Q Consensus        94 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  168 (244)
                      ++..|++.-|.+-+.+-.+.+|+++.--..+-....+ -+..+|..-+.+--+...+..+.+..++...+.+...
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k-~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e  216 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK-LDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE  216 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh-CCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH
Confidence            9999999999999999999999987543333333222 3566666554443333344566777777777776643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.01  E-value=2.5e-07  Score=68.59  Aligned_cols=153  Identities=21%  Similarity=0.209  Sum_probs=127.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH---HHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKARDVEKALDVFTRAVQLDPENGE---AWN   88 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~   88 (244)
                      .+..|+.-|...++.|++++|+..|+......|..+   .+...++.++++.+++++|+...++-++..|++++   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            578899999999999999999999999999887654   68889999999999999999999999999987754   567


Q ss_pred             HHHHHHHHc--------CChHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Q 039523           89 IIACLHMIK--------NKSKEAFIAFKEALKLKRNGWQ-----------------LWENYSHVALDVGNIGQALEAVQM  143 (244)
Q Consensus        89 ~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~  143 (244)
                      ..|.++...        .-..+|+..|++.+...|++..                 --..+|..|.+.|.+..|+..++.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            777776532        2236888899999999998631                 124568889999999999999999


Q ss_pred             HHhhcCCchhhHHHHHHHHHHhcc
Q 039523          144 VLNITNNKRIDTELLERIVLNLEG  167 (244)
Q Consensus       144 al~~~p~~~~~~~~l~~~~~~~~~  167 (244)
                      +++..|+.+.....+..+...+..
T Consensus       193 v~e~y~~t~~~~eaL~~l~eaY~~  216 (254)
T COG4105         193 VLENYPDTSAVREALARLEEAYYA  216 (254)
T ss_pred             HHhccccccchHHHHHHHHHHHHH
Confidence            999999877777777777776664

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.01  E-value=3.5e-08  Score=66.86  Aligned_cols=108  Identities=14%  Similarity=0.107  Sum_probs=94.9

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHH
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWE  122 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~  122 (244)
                      .+..++.-|...++.|+|++|++.++.+....|..   ..+.+.+|.++++.|++++|+..+++-++++|++   ..+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            45678899999999999999999999999988754   5788999999999999999999999999999977   46788


Q ss_pred             HHHHHHHHcCC---------------HHHHHHHHHHHHhhcCCchhhHH
Q 039523          123 NYSHVALDVGN---------------IGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus       123 ~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      ..|.++..+..               ...|...|++.++..|++.....
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            88988888776               78899999999999999766544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.99  E-value=1.6e-08  Score=80.90  Aligned_cols=68  Identities=16%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH---HHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDG---WFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      +|+++.+++++|..++..|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.+++++++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44455555555555555555555555555555555544422   555555555555555555555555543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.98  E-value=4.1e-08  Score=73.33  Aligned_cols=101  Identities=14%  Similarity=0.111  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWENYSH  126 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~  126 (244)
                      .+..|.-++..|+|.+|...|..-++..|++   +.+++-||.+++.+|+++.|...|..+++-.|++   ++.++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6889999999999999999999999999975   6789999999999999999999999999987765   788999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523          127 VALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus       127 ~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                      +...+|+.++|...|+++++..|+.+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            999999999999999999999999553

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.97  E-value=2e-07  Score=72.68  Aligned_cols=157  Identities=16%  Similarity=0.097  Sum_probs=98.7

Q ss_pred             HHHHHhhcc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC---
Q 039523            5 MKKLWKFQM-ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD---   80 (244)
Q Consensus         5 ~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---   80 (244)
                      +.++-+..+ +........+......|++..|.....+++...|.++.+......+|.+.|++.+....+.+.-+..   
T Consensus       141 L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~  220 (400)
T COG3071         141 LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS  220 (400)
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence            344444422 2334455666666666666777666666666666666666666666666666666665555432221   


Q ss_pred             ---------------------------------------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh---------
Q 039523           81 ---------------------------------------PENGEAWNIIACLHMIKNKSKEAFIAFKEALK---------  112 (244)
Q Consensus        81 ---------------------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---------  112 (244)
                                                             .+++.....++.-+...|++++|.+..+.+++         
T Consensus       221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~  300 (400)
T COG3071         221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR  300 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH
Confidence                                                   13345555566666666666666665554443         


Q ss_pred             ----------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          113 ----------------------LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       113 ----------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                                            ..|+++..+..+|..|.+.+.|.+|..+|+.+++..|+.. +...+....
T Consensus       301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~  371 (400)
T COG3071         301 LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADAL  371 (400)
T ss_pred             HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHH
Confidence                                  3577788888888888888888888888888888877733 333343333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.97  E-value=3.6e-08  Score=70.93  Aligned_cols=145  Identities=11%  Similarity=0.088  Sum_probs=112.5

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      -.|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...++++|.+..+..+.|..+.--|++.-|.+.+.+-.+.+|+
T Consensus        86 ~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~  165 (297)
T COG4785          86 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN  165 (297)
T ss_pred             hhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cHH--HHHHHH--------------HH--------------HHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHH
Q 039523           83 NGE--AWNIIA--------------CL--------------HMIKNKSKEAFIAFKEALKLKRNG-------WQLWENYS  125 (244)
Q Consensus        83 ~~~--~~~~l~--------------~~--------------~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la  125 (244)
                      +|-  .|..+.              .-              -...|+.. -...++++..-..++       .+.++.+|
T Consensus       166 DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~  244 (297)
T COG4785         166 DPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLG  244 (297)
T ss_pred             ChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence            873  222111              11              11122211 111223333322232       46788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhc
Q 039523          126 HVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       126 ~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      ..+...|+.++|...|+-++.-+
T Consensus       245 K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         245 KYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHhccccHHHHHHHHHHHHHHh
Confidence            99999999999999999888653

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.96  E-value=1.5e-07  Score=84.69  Aligned_cols=141  Identities=11%  Similarity=0.089  Sum_probs=73.7

Q ss_pred             hHHHHHHhhc-cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            3 PAMKKLWKFQ-MISQLELRSLARSAYNRGEYETSKILREAAMAL--NSLYPDGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         3 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      ++|+++.+.+ +.+...|..+...|.+.|++++|...|.+....  .| +...+..+...+.+.|++++|.+.+..+.+.
T Consensus       600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            3344444332 234445555555555555555555555555443  23 2344555555555555555555555555543


Q ss_pred             C-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           80 D-PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--KRNGWQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        80 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      . +.+...+..+...|.+.|++++|...|++....  .| +...|..+...|.+.|++++|.+.|++..
T Consensus       679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            2 224445555556666666666666666555432  23 34555666666666666666666666544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=4.9e-08  Score=79.54  Aligned_cols=140  Identities=17%  Similarity=0.208  Sum_probs=111.6

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      ...+.+...|++..++...-.+..+.++|++|+...+.-......+ ...+..+.|.++.+..++|+.+++   -.++.+
T Consensus        34 ~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~  109 (652)
T KOG2376|consen   34 TANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLD  109 (652)
T ss_pred             HHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccc
Confidence            3455666789999999999999999999999985554433322222 223788999999999999999998   556667


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------C-CCHHHHHHHHHHHHHcC
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLK------------------------------R-NGWQLWENYSHVALDVG  132 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------------p-~~~~~~~~la~~~~~~~  132 (244)
                      .......|.+++++|+|++|+..|+..++.+                              | ++...+++.+.++...|
T Consensus       110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g  189 (652)
T KOG2376|consen  110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG  189 (652)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence            7788889999999999999999999775442                              2 24567899999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 039523          133 NIGQALEAVQMVLNI  147 (244)
Q Consensus       133 ~~~~A~~~~~~al~~  147 (244)
                      +|.+|++.+++++++
T Consensus       190 ky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  190 KYNQAIELLEKALRI  204 (652)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999999554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.95  E-value=6.5e-09  Score=82.99  Aligned_cols=70  Identities=26%  Similarity=0.363  Sum_probs=61.7

Q ss_pred             hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523           45 LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA---WNIIACLHMIKNKSKEAFIAFKEALKLK  114 (244)
Q Consensus        45 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~~  114 (244)
                      .+|+++.+++++|.++...|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            357788899999999999999999999999999999998854   9999999999999999999999999873

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.94  E-value=3.7e-07  Score=82.21  Aligned_cols=143  Identities=11%  Similarity=0.040  Sum_probs=89.3

Q ss_pred             hHHHHHHhhcc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            3 PAMKKLWKFQM-ISQLELRSLARSAYNRGEYETSKILREAAMALN--SLYPDGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         3 ~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      ++|+++.+... -+...|..+...|.+.|++++|...|.+.....  | +...|..+...+.+.|++++|.+.+.++...
T Consensus       493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~  571 (1060)
T PLN03218        493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAE  571 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34555544322 245666666677777777777777776665432  3 4556666667777777777777777666542


Q ss_pred             ----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           80 ----DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        80 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                          .| +...|..+...+.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|...|++..+.
T Consensus       572 ~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        572 THPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             cCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence                23 34556666666777777777777777666654 334566666667777777777777777666554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.94  E-value=3.7e-07  Score=64.27  Aligned_cols=129  Identities=16%  Similarity=0.145  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CcHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMA-LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP--ENGEAWNIIAC   92 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~   92 (244)
                      ..-.+.+|......|++.+|...|.+++. ...+++..+..++...+..+++..|...+++..+.+|  ..++....+|.
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            34456778888888888888888888776 3456677777888888888888888888888887777  35667777788


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      ++..+|++.+|...|+.++...|+ +......+..+.++|+..++...+....
T Consensus       169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            888888888888888888887775 4556666777777787766655544433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.93  E-value=7.7e-07  Score=69.51  Aligned_cols=144  Identities=15%  Similarity=0.142  Sum_probs=121.4

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------------------------------------
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN------------------------------------   46 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------------------------   46 (244)
                      .-..++++..|.+++++....++|...|+|........+.-+..                                    
T Consensus       174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            45667888899999999999999999999999998888764321                                    


Q ss_pred             ------CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------------------------------CCcHHHHHH
Q 039523           47 ------SLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-------------------------------PENGEAWNI   89 (244)
Q Consensus        47 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------------------------------p~~~~~~~~   89 (244)
                            ..++.+...++.-+.+.|+.++|.+....+++..                               |++|..+..
T Consensus       254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t  333 (400)
T COG3071         254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST  333 (400)
T ss_pred             hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence                  1234556677888889999999999999776643                               777889999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      +|..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++..+|+...|.+++++++..
T Consensus       334 LG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         334 LGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999999999999999999998875 567889999999999999999999998854

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.92  E-value=1.8e-07  Score=74.65  Aligned_cols=148  Identities=10%  Similarity=0.176  Sum_probs=119.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |.+.|++||..+-.+...|...+.+-+..+....|...+.+++..-|.....|+.+..+-...|+...|.+.|++.+...
T Consensus        92 ARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~  171 (677)
T KOG1915|consen   92 ARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE  171 (677)
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence            45688999999988899999999999999999999999999999999888999999888889999999999999999988


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      |+ ..+|......-.+.+..+-|...|++-+-.+|+ ...|...+..-...|+...|...|++|++...+
T Consensus       172 P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~  239 (677)
T KOG1915|consen  172 PD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD  239 (677)
T ss_pred             Cc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence            84 456666666666777777777777777777764 566777777777777777777777777766544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=1.1e-07  Score=70.38  Aligned_cols=150  Identities=17%  Similarity=0.156  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCcHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALN-SLYPDGWFALGAAALKARDVEKALDVFTRAVQLD------PENGEAWN   88 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~   88 (244)
                      ..+.+.+..++.-.|+|.-....+.+.++.+ |..+.....+|.+.++.|+.+.|..+++..-+..      .....+..
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            3566788888999999999999999999998 5677888899999999999999999999554432      23445677


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523           89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus        89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      +.+.++...+++.+|...+.+++..+|.++.+..+.|.|....|+..+|+..++.++.+.|........+-.+...+
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999665554444444333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.88  E-value=1.4e-07  Score=82.45  Aligned_cols=135  Identities=13%  Similarity=0.099  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CcHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALN--SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP--ENGEAWNII   90 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l   90 (244)
                      +...|..+...|...|+.++|+..|++.....  | +...+..+...+.+.|..++|.++|+...+..+  .+...|..+
T Consensus       390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l  468 (697)
T PLN03081        390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM  468 (697)
T ss_pred             CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence            56788999999999999999999999987643  4 566677888888899999999999988876433  234567778


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      ..++.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+++.|++.
T Consensus       469 i~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~  528 (697)
T PLN03081        469 IELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL  528 (697)
T ss_pred             HHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence            88899999999998888764 2334 456788888888889999999999998888888743

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.86  E-value=2.3e-07  Score=71.85  Aligned_cols=136  Identities=13%  Similarity=0.149  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK-ARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      -+|..+.+...+.+..+.|...|.++.+..+.+..+|...|.+... .++.+.|...|+.+++..|.+...|......+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3677788888888889999999999997777788999999999777 566677999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGW---QLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      ..|+.+.|...|++++..-|...   .+|..........|+.+......+++.+..|+..
T Consensus        82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999877554   6899999999999999999999999999988833

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=4.9e-07  Score=73.90  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=116.2

Q ss_pred             HHHHHHhh---ccC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523            4 AMKKLWKF---QMI---SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         4 ~~~~al~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      -|+.|+.+   ++.   .....+..|.++++.++.++|+..++   ..++.+..+....|.++++.|+|++|...|+..+
T Consensus        61 ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~  137 (652)
T KOG2376|consen   61 KYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA  137 (652)
T ss_pred             HHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45666554   332   12223689999999999999999998   5667677788889999999999999999999875


Q ss_pred             hcC------------------------------C-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCC-
Q 039523           78 QLD------------------------------P-ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--------RNG-  117 (244)
Q Consensus        78 ~~~------------------------------p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~-  117 (244)
                      +.+                              | ++.+.+++.+.++...|+|.+|++.+++++++.        .+. 
T Consensus       138 kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE  217 (652)
T KOG2376|consen  138 KNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE  217 (652)
T ss_pred             hcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh
Confidence            543                              2 234678999999999999999999999995441        111 


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523          118 ------WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus       118 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                            ..+...++.++..+|+-++|...|...++.+|-+..
T Consensus       218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~  259 (652)
T KOG2376|consen  218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP  259 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence                  245678899999999999999999999999887543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.84  E-value=8.5e-07  Score=65.98  Aligned_cols=147  Identities=26%  Similarity=0.264  Sum_probs=112.8

Q ss_pred             HHHHHHh--hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHH-HHHHccCHHHHHHHHHHHHhcC
Q 039523            4 AMKKLWK--FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGA-AALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         4 ~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      .+...+.  ..+.....+...+......+++..++..+..++...+.........+. ++...|++++|...+.+++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  160 (291)
T COG0457          81 LLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD  160 (291)
T ss_pred             HHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3444444  567777788888888888888888888888888877766555555555 7888888888888888887766


Q ss_pred             C---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           81 P---ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-GWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        81 p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      |   .........+..+...++++.++..+.+++...+. ....+..++.++...++++.|...+..++...|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            6   34555666666677788888888888888888887 6788888888888888888888888888888776

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.84  E-value=5.6e-09  Score=64.63  Aligned_cols=66  Identities=21%  Similarity=0.260  Sum_probs=38.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---C----CChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALN---S----LYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |+.+.++..+|.++...|++++|+.+|++++++.   +    ....++.++|.++...|++++|+++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4455666667777777777777777776666541   1    1133455666666666666666666666554

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.82  E-value=9.1e-08  Score=67.02  Aligned_cols=65  Identities=26%  Similarity=0.334  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           32 YETSKILREAAMALNSLYPDGWFALGAAALKARDV----------EKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      |+.|.+.++.....+|.++..+++-|.++..+.++          ++|+.-|++++.++|+..++++.+|.++..
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            45666666666677777777666666666555332          344444445555555555555555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.82  E-value=7.7e-09  Score=63.99  Aligned_cols=64  Identities=23%  Similarity=0.285  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLK-------RNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      ..++.++|.++..+|++++|+.+|++++.+.       |....++.++|.++...|++++|+.++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4455666666666666666666666665441       112445666666666666666666666666654

...

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.82  E-value=2.6e-07  Score=80.86  Aligned_cols=145  Identities=13%  Similarity=0.076  Sum_probs=113.5

Q ss_pred             chHHHHHHhhc-cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            2 MPAMKKLWKFQ-MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         2 i~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      ..++..+++.. +.+...+..+...|.+.|+.++|...|++..+  | +...|..+...|.+.|+.++|++.|++..+..
T Consensus       345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45666776664 55677888999999999999999999998754  3 66789999999999999999999999987643


Q ss_pred             C-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           81 P-ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        81 p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      . -+...+..+...+.+.|..++|..+|+...+..+  .+...|..+...+.+.|++++|.+.+++. ...|+
T Consensus       422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~  493 (697)
T PLN03081        422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT  493 (697)
T ss_pred             CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence            2 2455677777888999999999999998875422  23456788889999999999999988764 23444

>PLN03077 Protein ECB2; Provisional

Probab=98.81  E-value=5.3e-07  Score=80.71  Aligned_cols=144  Identities=14%  Similarity=0.061  Sum_probs=116.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CcHHHHH
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMAL--NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP--ENGEAWN   88 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~   88 (244)
                      +.+...|..+...|...|+.++|+..|++..+.  .| +...+..+...+.+.|.+++|.++|+...+..+  .+...|.
T Consensus       551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~  629 (857)
T PLN03077        551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA  629 (857)
T ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence            557888999999999999999999999998874  45 445566677789999999999999999884432  2446788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523           89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus        89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      .+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++.+++.|++......+.
T Consensus       630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~  698 (857)
T PLN03077        630 CVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC  698 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence            8999999999999999999875 35554 677888888888899999999999999999998654444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.80  E-value=7.1e-07  Score=59.10  Aligned_cols=91  Identities=21%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcC
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN----GEAWNIIACLHMIKN   98 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~   98 (244)
                      |......|+.+.|++.|.+++.+.|..+.++.+.+..+.-.|+.++|++.+++++++....    -.++...|.+|...|
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            4444445555555555555555555555555555555555555555555555555543221    123444555555555


Q ss_pred             ChHHHHHHHHHHHhc
Q 039523           99 KSKEAFIAFKEALKL  113 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~  113 (244)
                      +-+.|..-|+.+-++
T Consensus       130 ~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  130 NDDAARADFEAAAQL  144 (175)
T ss_pred             chHHHHHhHHHHHHh
Confidence            555555555544443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.80  E-value=1.4e-06  Score=64.84  Aligned_cols=148  Identities=20%  Similarity=0.197  Sum_probs=107.3

Q ss_pred             hHHHHHHhhccC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            3 PAMKKLWKFQMI--SQLELRSLARSAYNRGEYETSKILREAAMA--LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         3 ~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      ..+...+...+.  ........+..+...+++..+...+...+.  ..+.....+...+......+++.++...+.+++.
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (291)
T COG0457          44 ELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA  123 (291)
T ss_pred             HHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            344555555554  366777777788888888888888887776  5666777777888888888888888888888887


Q ss_pred             cCCCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           79 LDPENGEAWNIIAC-LHMIKNKSKEAFIAFKEALKLKR---NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        79 ~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ..+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.+...+.+++...+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         124 LDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             CCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            77766555555555 77788888888888888777665   34555566666677777888888888888877776

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.80  E-value=8.8e-08  Score=67.08  Aligned_cols=97  Identities=18%  Similarity=0.124  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 039523           66 VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKS----------KEAFIAFKEALKLKRNGWQLWENYSHVALDVGN--  133 (244)
Q Consensus        66 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~--  133 (244)
                      |+.|.+.++.....+|.+++.+++.|.++..+.++          ++|+.-|++++.++|+...+++.+|.++..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            67899999999999999999999999988766444          677888889999999999999999999987653  


Q ss_pred             ---------HHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          134 ---------IGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       134 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                               |++|..+|+++...+|++......|....
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                     78899999999999999776655555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.79  E-value=2e-06  Score=60.70  Aligned_cols=130  Identities=9%  Similarity=0.055  Sum_probs=110.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCC
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ-LDPENGEAWNIIACLHMIKNK   99 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~~~   99 (244)
                      .++....+.=+.+.......+.+...| ...-.+.+|....+.|++.+|...|++++. +..+++..+..++...+..++
T Consensus        61 ~~~~a~~q~ldP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~  139 (251)
T COG4700          61 TLLMALQQKLDPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE  139 (251)
T ss_pred             HHHHHHHHhcChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence            344455555667777777777777777 444567899999999999999999999986 466889999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523          100 SKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus       100 ~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      +..|...+++..+.+|.  .+.....+|..+...|.+.+|...|+.++...|+.
T Consensus       140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            99999999999999875  46778889999999999999999999999999983

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.6e-07  Score=68.43  Aligned_cols=96  Identities=19%  Similarity=0.209  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIK   97 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   97 (244)
                      -+..-|+.++....|+.|+.+|.+++.++|..+..|.+.+.++++.++++.+..-..++++++|+....++.+|.+....
T Consensus        12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s   91 (284)
T KOG4642|consen   12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS   91 (284)
T ss_pred             HHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence            34566788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhc
Q 039523           98 NKSKEAFIAFKEALKL  113 (244)
Q Consensus        98 ~~~~~A~~~~~~a~~~  113 (244)
                      ..|++|+..+.++..+
T Consensus        92 ~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   92 KGYDEAIKVLQRAYSL  107 (284)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999999999655

>PLN03077 Protein ECB2; Provisional

Probab=98.78  E-value=4.9e-07  Score=80.96  Aligned_cols=143  Identities=10%  Similarity=0.105  Sum_probs=119.4

Q ss_pred             CchHHHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSL--YPDGWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      |+++|++..+.  .|+ ...+..+-..+...|..++|..+|+...+..+-  +...+..+..++.+.|++++|.+.+++.
T Consensus       573 A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        573 AVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            46778887764  455 444666667789999999999999999854322  5568899999999999999999999885


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                       ...| ++.+|..+-..+...|+.+.+....++++++.|++...+..++.+|...|++++|....+...+
T Consensus       652 -~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        652 -PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             -CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence             3555 4677888877888899999999999999999999999999999999999999999988877654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.78  E-value=2.7e-07  Score=61.02  Aligned_cols=98  Identities=22%  Similarity=0.241  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHH
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG----WQLWENYSHVA  128 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~  128 (244)
                      +..-|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|++-+.+++++....    ..++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            44567788899999999999999999999999999999999999999999999999999996543    35677889999


Q ss_pred             HHcCCHHHHHHHHHHHHhhcCC
Q 039523          129 LDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ..+|+.+.|..-|+.+-++...
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCCH
Confidence            9999999999999999887544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.76  E-value=1.2e-07  Score=73.69  Aligned_cols=132  Identities=12%  Similarity=0.088  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC----hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--C----c
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNS--LY----PDGWFALGAAALKARDVEKALDVFTRAVQLDP--E----N   83 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~----~   83 (244)
                      ...+...|..|...|++++|...|.++....-  ++    ...+...+.++.+. ++++|++++++++.+.-  .    -
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a  113 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            45677889999999999999999999977542  11    34566666666555 99999999999998632  1    2


Q ss_pred             HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           84 GEAWNIIACLHMIK-NKSKEAFIAFKEALKLKRN--G----WQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        84 ~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      ..++..+|.++... |++++|+++|++|+.....  .    ..++..+|.++...|+|++|+..|++.....
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            45788899999998 9999999999999987321  1    4567889999999999999999999998764

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.75  E-value=2.6e-08  Score=78.14  Aligned_cols=133  Identities=11%  Similarity=0.168  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CC--c
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKALDVFTRAVQLD----PE--N   83 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~--~   83 (244)
                      .+++-++|+.|+..|+|+.|+...+.-+.+....      -.++.++|.++.-.|+++.|+++|++.+.+.    ..  .
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE  274 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE  274 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence            5678899999999999999999988887765433      2478899999999999999999999876542    22  3


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKR------NGWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      +...+.+|..|.-..++++|+.++.+-+.+..      ....+++.+|..+..+|..++|+.+.++.++..
T Consensus       275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            45678899999999999999999998877642      346788999999999999999999888887764

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=1e-06  Score=70.51  Aligned_cols=145  Identities=14%  Similarity=0.204  Sum_probs=134.9

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523            5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus         5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      |+..+..+.-+...|...|.--..++++..|...|++|+..+..+...|..++.+-++.+....|...+++++.+-|.-.
T Consensus        62 fEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd  141 (677)
T KOG1915|consen   62 FEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD  141 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH
Confidence            55566666667888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ..|+.....-..+|+..-|...|++-+...|+ ..+|......-...+..+.|...|++.+-..|+
T Consensus       142 qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~  206 (677)
T KOG1915|consen  142 QLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK  206 (677)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence            99999999999999999999999999999995 678998999999999999999999999988888

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=6e-08  Score=70.67  Aligned_cols=94  Identities=16%  Similarity=0.201  Sum_probs=87.9

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523           55 ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI  134 (244)
Q Consensus        55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~  134 (244)
                      .-|..++....|+.|+.+|.+++.++|..+..|.+.+.|+++.++++.+.....+++++.|+.....+.+|.+......|
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            34666777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 039523          135 GQALEAVQMVLNIT  148 (244)
Q Consensus       135 ~~A~~~~~~al~~~  148 (244)
                      .+|+..+.++..+.
T Consensus        95 ~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   95 DEAIKVLQRAYSLL  108 (284)
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999996553

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.70  E-value=5.7e-08  Score=76.26  Aligned_cols=146  Identities=14%  Similarity=0.144  Sum_probs=88.2

Q ss_pred             chHHHHHHhhccCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCChhHHHHHHHHHHHccCHHHHHH
Q 039523            2 MPAMKKLWKFQMIS----QLELRSLARSAYNRGEYETSKILREAAMALN------SLYPDGWFALGAAALKARDVEKALD   71 (244)
Q Consensus         2 i~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~   71 (244)
                      +..|+.|++...++    ..+|..+|+.|+..++|++|+++...=+.+.      -..+...-++|..+-..|.|++|+.
T Consensus        37 v~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~  116 (639)
T KOG1130|consen   37 VDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALT  116 (639)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHH
Confidence            46788888886655    3467788888888888888888754433221      1122334456666666666666666


Q ss_pred             HHHHHHhcCC------CcHH------------------------------------------------------------
Q 039523           72 VFTRAVQLDP------ENGE------------------------------------------------------------   85 (244)
Q Consensus        72 ~~~~a~~~~p------~~~~------------------------------------------------------------   85 (244)
                      ++.+-+.+..      ....                                                            
T Consensus       117 cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGR  196 (639)
T KOG1130|consen  117 CCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGR  196 (639)
T ss_pred             HHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcc
Confidence            6555443321      0112                                                            


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      ++-++|..|+-+|+|++|+..-+.-+.+...      ...++.++|.++.-+|+++.|+++|++.+.+
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            3334444455556666666555544443221      1356778888888888888888888877654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=5.2e-07  Score=69.74  Aligned_cols=127  Identities=17%  Similarity=0.109  Sum_probs=100.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 039523           24 RSAYNRGEYETSKILREAAMALNSLYP-DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKE  102 (244)
Q Consensus        24 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  102 (244)
                      .-+....+|..|+..++-....+.+.. ..-..+|.|+++.|+|++|...|.-+...+..+...+.+++.|++..|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            345677899999999998887765443 5667899999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHHHhc--------------CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          103 AFIAFKEALKL--------------KR------------NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       103 A~~~~~~a~~~--------------~p------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      |.....++-+.              +.            +..+-...++.+....-.|++|++.|++++.-+|+
T Consensus       110 A~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  110 AKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            98876654221              11            11122344556666666799999999999988887

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.65  E-value=2.3e-06  Score=76.39  Aligned_cols=143  Identities=14%  Similarity=0.176  Sum_probs=93.8

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE-   82 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-   82 (244)
                      .|++|.+. -+.-.++..|..+|...+++++|.++++..++...+...+|..+|..+++.++-++|...+.+|++.-|. 
T Consensus      1519 VFeRAcqy-cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQY-CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHHHHHh-cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence            44454443 1223455666666666677777777777776666666666777777777766666677777777766665 


Q ss_pred             -cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           83 -NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        83 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                       +.......|.+.++.|+.+.+...|+..+.-.|.-.++|.-+...-...|+.+.++..|++++.+
T Consensus      1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence             45556666666667777777777777666667766667776666666667766666777666655

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.64  E-value=8.9e-07  Score=68.59  Aligned_cols=145  Identities=14%  Similarity=0.102  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----c---
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKALDVFTRAVQLDPE----N---   83 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~---   83 (244)
                      .+...+|+.+..++.++++++.|+.+++...++.      .++..+|..+-+..++++|.-+..++..+...    +   
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            5677899999999999999999999998764432      47889999999999999999999988876432    2   


Q ss_pred             ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523           84 ---GEAWNIIACLHMIKNKSKEAFIAFKEALKLK------RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID  154 (244)
Q Consensus        84 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  154 (244)
                         ..+.+.++..+..+|....|.++++++.++.      +-......-+|++|...|+.+.|..-|+.+..........
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr  282 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR  282 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence               2356788999999999999999999998773      2335667889999999999999999999998876553333


Q ss_pred             HHHHHHH
Q 039523          155 TELLERI  161 (244)
Q Consensus       155 ~~~l~~~  161 (244)
                      ...+..+
T Consensus       283 mgqv~al  289 (518)
T KOG1941|consen  283 MGQVEAL  289 (518)
T ss_pred             HHHHHHH
Confidence            3333333

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.63  E-value=1.2e-07  Score=51.54  Aligned_cols=38  Identities=34%  Similarity=0.682  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII   90 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l   90 (244)
                      +..+|.++...|++++|++.|+++++.+|+++.+|..+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            33344444444444444444444444444444444333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.62  E-value=1.8e-05  Score=58.97  Aligned_cols=150  Identities=17%  Similarity=0.179  Sum_probs=118.8

Q ss_pred             CchHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHHc--------cCH
Q 039523            1 MMPAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLYPD---GWFALGAAALKA--------RDV   66 (244)
Q Consensus         1 Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------g~~   66 (244)
                      |+..|+++...+|.+   ..+...++..+++.++++.|+...++-+...|.++.   +++..|.+++..        .-.
T Consensus        53 A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~  132 (254)
T COG4105          53 AIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAA  132 (254)
T ss_pred             HHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHH
Confidence            567788888777664   678999999999999999999999999999987764   566777776543        224


Q ss_pred             HHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 039523           67 EKALDVFTRAVQLDPENGE-----------------AWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWENYSH  126 (244)
Q Consensus        67 ~~A~~~~~~a~~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~  126 (244)
                      .+|...++..+...|++.-                 --..+|..|.+.|.+..|+.-++.+++..|+.   ..++..+..
T Consensus       133 ~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~e  212 (254)
T COG4105         133 RAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEE  212 (254)
T ss_pred             HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            6788889999999998742                 12456788999999999999999999987765   566788888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhc-CCc
Q 039523          127 VALDVGNIGQALEAVQMVLNIT-NNK  151 (244)
Q Consensus       127 ~~~~~~~~~~A~~~~~~al~~~-p~~  151 (244)
                      +|..+|-.++|...- +.|..+ |+.
T Consensus       213 aY~~lgl~~~a~~~~-~vl~~N~p~s  237 (254)
T COG4105         213 AYYALGLTDEAKKTA-KVLGANYPDS  237 (254)
T ss_pred             HHHHhCChHHHHHHH-HHHHhcCCCC
Confidence            999999999886654 555554 443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.59  E-value=1.4e-07  Score=75.48  Aligned_cols=110  Identities=20%  Similarity=0.164  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN   98 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~   98 (244)
                      .-.-+..++..++|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+|+..|.+....+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            34556777788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           99 KSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      ++.+|...|+....+.|+++.+...+..|-
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            888888888888888888887776666553

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.59  E-value=5.1e-06  Score=74.25  Aligned_cols=148  Identities=14%  Similarity=0.114  Sum_probs=99.4

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC----hhH-------------------------
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMAL-NSLY----PDG-------------------------   52 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~-------------------------   52 (244)
                      +.|++.+.-+|++.-.|...-..+...++.++|++..++|+.. ++..    ..+                         
T Consensus      1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence            4577888889999999999999999999999999999999864 2211    112                         


Q ss_pred             --------HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHH
Q 039523           53 --------WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWE  122 (244)
Q Consensus        53 --------~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~  122 (244)
                              +..|..+|...+.+++|.++++..++...+...+|..+|..++.+++-+.|...+.+|++.-|.  +..+..
T Consensus      1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred             HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence                    3344445555566666666666666655555666666666666666666666666666666665  455555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          123 NYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       123 ~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ..|.+.++.|+.+.++..|+..+.-.|.
T Consensus      1605 kfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             HHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence            6666666666666666666666666655

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.59  E-value=1.6e-07  Score=50.93  Aligned_cols=43  Identities=28%  Similarity=0.376  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGA   58 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   58 (244)
                      +.++..+|..|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3678999999999999999999999999999999999999885

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=2.9e-05  Score=57.95  Aligned_cols=88  Identities=17%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHH
Q 039523           65 DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL-EAVQM  143 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~  143 (244)
                      ++.+|.-+|+..-...|..+......+.|+..+|+|++|...++.++..+++++..+.++..+-...|...++. +.+.+
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q  267 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ  267 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            34455555555554444455555555555555555555555555555555555555555555555555443332 33333


Q ss_pred             HHhhcCCch
Q 039523          144 VLNITNNKR  152 (244)
Q Consensus       144 al~~~p~~~  152 (244)
                      .....|.++
T Consensus       268 Lk~~~p~h~  276 (299)
T KOG3081|consen  268 LKLSHPEHP  276 (299)
T ss_pred             HHhcCCcch
Confidence            333444433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.56  E-value=8.8e-08  Score=48.65  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHH
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSK   36 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~   36 (244)
                      +|+++++++|+++.+|+.+|.++...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            366777777777777777777777777777764

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=5.1e-06  Score=63.91  Aligned_cols=142  Identities=13%  Similarity=-0.011  Sum_probs=117.8

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMAL-NSLY---PDGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      ..++.++..|.+--++..--..++.+|+.+.-...+++.+.. +++-   ..+.-.++..+...|-|++|.+.-.+++++
T Consensus       125 ~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi  204 (491)
T KOG2610|consen  125 EWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI  204 (491)
T ss_pred             HHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence            456888889999888888889999999999999999999877 6655   455667889999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG----WQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      +|.+..+....+.++...|++.++.+...+.-..-...    ...|...+.++..-+.|+.|++.|.+-+
T Consensus       205 N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  205 NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            99999999999999999999999999887643332211    1234556888888899999999998765

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=1.2e-05  Score=59.94  Aligned_cols=116  Identities=17%  Similarity=0.139  Sum_probs=102.0

Q ss_pred             chHHHHHHhhc-cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCChhHHHHHHHHHHHccCHHHHHHHHH
Q 039523            2 MPAMKKLWKFQ-MISQLELRSLARSAYNRGEYETSKILREAAMALN------SLYPDGWFALGAAALKARDVEKALDVFT   74 (244)
Q Consensus         2 i~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~   74 (244)
                      +..+.+.++.+ |.++.....+|.+.++.|+...|..++++.-+..      ..+..+..+.+.++.-.+++..|...+.
T Consensus       197 ~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~  276 (366)
T KOG2796|consen  197 VDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT  276 (366)
T ss_pred             HHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence            35678888887 6788999999999999999999999999554332      2345577888999999999999999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           75 RAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        75 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      +++..+|.++.+..+.|.|+...|+..+|++..+.++...|..
T Consensus       277 ~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  277 EILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999999999999999999964

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.48  E-value=1.2e-05  Score=65.07  Aligned_cols=147  Identities=12%  Similarity=0.038  Sum_probs=108.4

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------------------------ChhHHHHH
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSL-------------------------YPDGWFAL   56 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------------------------~~~~~~~l   56 (244)
                      |+.-++|++++|+.+.+|..||....  .-..+|..+++++++....                         ...+...+
T Consensus       188 IkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRL  265 (539)
T PF04184_consen  188 IKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRL  265 (539)
T ss_pred             HHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHH
Confidence            46678999999999999998886432  2345666666666553210                         02345689


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-cC
Q 039523           57 GAAALKARDVEKALDVFTRAVQLDPE--NGEAWNIIACLHMIKNKSKEAFIAFKEALKL-KRNGWQLWENYSHVALD-VG  132 (244)
Q Consensus        57 a~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~-~~  132 (244)
                      |.|..+.|+.++|++.+...++..|.  +..++.++..++...+.|.++...+.+.-.. -|++....+.-+.+..+ .+
T Consensus       266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~  345 (539)
T PF04184_consen  266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVG  345 (539)
T ss_pred             HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhc
Confidence            99999999999999999999998774  5678999999999999999999999886443 35566666555554332 12


Q ss_pred             C---------------HHHHHHHHHHHHhhcCC
Q 039523          133 N---------------IGQALEAVQMVLNITNN  150 (244)
Q Consensus       133 ~---------------~~~A~~~~~~al~~~p~  150 (244)
                      +               -..|.+.+.+|++.+|-
T Consensus       346 d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  346 DKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             cccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence            1               23467889999999887

The molecular function of this protein is uncertain.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=4.5e-06  Score=61.42  Aligned_cols=100  Identities=15%  Similarity=0.084  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCc----------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQL--------DPEN----------GEAWNIIACLHMIKNKSKEAFIAFKEALK  112 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  112 (244)
                      .++..-|+-+++.|+|.+|...|..++..        .|..          ...+.+++.|+...|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            35667788889999999999988877543        3433          35688999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       113 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ..|.+..+++..|.+....=+..+|...|.++++++|.
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            99999999999999999999999999999999999998

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.45  E-value=8.4e-06  Score=63.21  Aligned_cols=119  Identities=17%  Similarity=0.151  Sum_probs=99.8

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYN-RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      ..+|.+|.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|..+...+...|+.+.|..+|++++..-
T Consensus        21 R~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l  100 (280)
T PF05843_consen   21 RKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSL  100 (280)
T ss_dssp             HHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            467889987667788999999999776 6777779999999999999999999999999999999999999999999987


Q ss_pred             CCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523           81 PENG---EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL  120 (244)
Q Consensus        81 p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  120 (244)
                      |...   ..|......-...|+.+...+..+++.+..|.+...
T Consensus       101 ~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen  101 PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence            7655   688888899999999999999999999998875433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.44  E-value=1.8e-05  Score=71.59  Aligned_cols=148  Identities=14%  Similarity=0.054  Sum_probs=103.5

Q ss_pred             chHHHHHHhhccCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHHH
Q 039523            2 MPAMKKLWKFQMIS-----QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKAL   70 (244)
Q Consensus         2 i~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~   70 (244)
                      ...+++++...|..     ..+...+|.++...|++++|...+.+++......      ..++..+|.++...|++++|.
T Consensus       472 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~  551 (903)
T PRK04841        472 ERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAY  551 (903)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            45566666643322     2345677888888889988888888888653321      235567788888889999988


Q ss_pred             HHHHHHHhcCCC--------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHH
Q 039523           71 DVFTRAVQLDPE--------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-----GWQLWENYSHVALDVGNIGQA  137 (244)
Q Consensus        71 ~~~~~a~~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~la~~~~~~~~~~~A  137 (244)
                      ..+.+++.....        ....+..+|.++...|++++|...+.+++.....     ....+..++.++...|+++.|
T Consensus       552 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  631 (903)
T PRK04841        552 ETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA  631 (903)
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence            888887765221        1234556788888889999998888888765321     244556678888888999999


Q ss_pred             HHHHHHHHhhcC
Q 039523          138 LEAVQMVLNITN  149 (244)
Q Consensus       138 ~~~~~~al~~~p  149 (244)
                      ...+.++..+.+
T Consensus       632 ~~~l~~a~~~~~  643 (903)
T PRK04841        632 RRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHHHHh
Confidence            888888876543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.2e-05  Score=59.34  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC----------hhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMAL--------NSLY----------PDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      ..++..-|+-++..|+|.+|...|+.|+..        .|..          ...+.+++.|++..|+|-++++.+...+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            567788899999999999999999999753        3433          3467899999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523           78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL  120 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  120 (244)
                      ..+|.+..+++..|.++...=+.++|..-|.++++++|.-..+
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            9999999999999999999999999999999999999975443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=5.7e-06  Score=62.72  Aligned_cols=124  Identities=15%  Similarity=0.071  Sum_probs=106.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 039523           26 AYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI  105 (244)
Q Consensus        26 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~  105 (244)
                      +.+..+|..|++++..-.+.+|.+-..+..+|.||....+|..|.++|++.-...|......+..+..++..+.+.+|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            36778899999999999999999999999999999999999999999999999999999888888998888888888876


Q ss_pred             HHHHHHh------------------------------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523          106 AFKEALK------------------------------LKR--NGWQLWENYSHVALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus       106 ~~~~a~~------------------------------~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  149 (244)
                      .......                              .-|  ++.....+.|.+..+.|+++.|++-|..+++...
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG  175 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG  175 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence            6542221                              113  4567788889999999999999999999998753

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=0.0001  Score=55.09  Aligned_cols=140  Identities=15%  Similarity=0.095  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM-   95 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-   95 (244)
                      .....-|.++...|++++|.+.....     .+..+...-..++.+..+++-|.+.++++.+++.+-  .+..+|..+. 
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~  181 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVK  181 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHH
Confidence            44455567888999999999887763     344555555678889999999999999998887533  3333444332 


Q ss_pred             ---HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523           96 ---IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus        96 ---~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                         ..+++.+|.-+|++.-...|..+..+...+.|+..+|+|++|...++.++..+++++..+..+-....
T Consensus       182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~  252 (299)
T KOG3081|consen  182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL  252 (299)
T ss_pred             HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence               34568899999999999888889999999999999999999999999999999987655544444333

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.42  E-value=5.2e-07  Score=72.25  Aligned_cols=112  Identities=18%  Similarity=0.217  Sum_probs=102.4

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523           55 ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI  134 (244)
Q Consensus        55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~  134 (244)
                      .-+...+..+.|+.|+..|.+++.++|+++..+-+.+.++.+.+++..|+.-+.++++.+|....+++..|.++...+.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          135 GQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       135 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      .+|...|++...+.|+.+.....+..-...+.
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVS  120 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence            99999999999999998877777766555444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.41  E-value=2.8e-07  Score=46.77  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=9.6

Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCChH
Q 039523           76 AVQLDPENGEAWNIIACLHMIKNKSK  101 (244)
Q Consensus        76 a~~~~p~~~~~~~~l~~~~~~~~~~~  101 (244)
                      +++++|+++.+|+++|.++...|+++
T Consensus         5 Aie~~P~n~~a~~nla~~~~~~g~~~   30 (34)
T PF13431_consen    5 AIELNPNNAEAYNNLANLYLNQGDYE   30 (34)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCcCHH
Confidence            33333333333333333333333333

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.39  E-value=2.2e-05  Score=65.30  Aligned_cols=146  Identities=15%  Similarity=0.200  Sum_probs=96.7

Q ss_pred             hHHHHHHhh-ccCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChhHHHHHHHHHHHccCHHHHHHH
Q 039523            3 PAMKKLWKF-QMIS-----QLELRSLARSAYNRGEYETSKILREAAMALNSL----YPDGWFALGAAALKARDVEKALDV   72 (244)
Q Consensus         3 ~~~~~al~~-~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~   72 (244)
                      ..|..|++. +|.-     ...|..+|..|...|+.+.|...|+++.+..-.    -..+|+..|..-++..+++.|.++
T Consensus       368 ~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l  447 (835)
T KOG2047|consen  368 NTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL  447 (835)
T ss_pred             HHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            346666554 5543     467889999999999999999999999887532    256888888888888889999888


Q ss_pred             HHHHHhcCCC------------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523           73 FTRAVQLDPE------------------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI  134 (244)
Q Consensus        73 ~~~a~~~~p~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~  134 (244)
                      ++++......                  +..+|..++......|-++.....|++.+.+.--.|....+.|..+....-+
T Consensus       448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf  527 (835)
T KOG2047|consen  448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF  527 (835)
T ss_pred             HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH
Confidence            8887654211                  1234555566666666666666666666666555555555555555555555


Q ss_pred             HHHHHHHHHHHhhc
Q 039523          135 GQALEAVQMVLNIT  148 (244)
Q Consensus       135 ~~A~~~~~~al~~~  148 (244)
                      +++.+.|++.+.+.
T Consensus       528 eesFk~YErgI~LF  541 (835)
T KOG2047|consen  528 EESFKAYERGISLF  541 (835)
T ss_pred             HHHHHHHHcCCccC
Confidence            55555555444443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.36  E-value=1.8e-05  Score=67.98  Aligned_cols=136  Identities=7%  Similarity=-0.019  Sum_probs=98.3

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 039523           27 YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIA  106 (244)
Q Consensus        27 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  106 (244)
                      ...+++.+|.....+.++..|+...+...-|.++.+.|+.++|..+++..-...+++...+-.+-.||..+|++++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            35677888888888888888888877777888888888888888777766666677777777778888888888888888


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch-hhHHHHHHHHH
Q 039523          107 FKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR-IDTELLERIVL  163 (244)
Q Consensus       107 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~  163 (244)
                      |++++..+|+ ......+-.+|.+.++|.+-...--+..+..|+.+ .-|.....+..
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq  156 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ  156 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence            8888888887 77777777777777777655444444444556533 23344443333

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=0.00018  Score=52.82  Aligned_cols=150  Identities=11%  Similarity=0.061  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH------HHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCc------H
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDG------WFALGAAALKA-RDVEKALDVFTRAVQLDPEN------G   84 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~------~   84 (244)
                      .+...+++| +.++..+|+.++++++++..+-...      ...+|.+|... .++++|+.+|+++-......      .
T Consensus        76 ~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN  154 (288)
T KOG1586|consen   76 TYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN  154 (288)
T ss_pred             HHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence            333444443 3347777777777777776544332      33667777655 77888888888876654322      2


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--chhhH
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ-------LWENYSHVALDVGNIGQALEAVQMVLNITNN--KRIDT  155 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~  155 (244)
                      .++...+......++|.+|+..|++.....-++..       .++..|.|+....+.-.+...+++..+++|.  +...-
T Consensus       155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc  234 (288)
T KOG1586|consen  155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC  234 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH
Confidence            34555666677788888888888887766554432       2445567777778888888888888888887  33445


Q ss_pred             HHHHHHHHHhccc
Q 039523          156 ELLERIVLNLEGR  168 (244)
Q Consensus       156 ~~l~~~~~~~~~~  168 (244)
                      ..+..+...+++.
T Consensus       235 kflk~L~~aieE~  247 (288)
T KOG1586|consen  235 KFLKDLLDAIEEQ  247 (288)
T ss_pred             HHHHHHHHHHhhh
Confidence            5666666666644

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.30  E-value=6.6e-05  Score=67.95  Aligned_cols=133  Identities=16%  Similarity=0.075  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYP-----DGWFALGAAALKARDVEKALDVFTRAVQLDPEN------GE   85 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~   85 (244)
                      .....+|.++...|++++|...+++++...+...     .+...+|.++...|++++|...+.+++......      ..
T Consensus       453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            4455678888999999999999999998655332     355778999999999999999999998753321      24


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRN--------GWQLWENYSHVALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  149 (244)
                      ++..+|.++...|++++|...+++++.....        ....+..+|.++...|++++|...+.+++....
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            5677899999999999999999998876221        233456788899999999999999999987643

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.1e-05  Score=62.02  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY----PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      +.-+..-|+-|+..++|..|+.+|.++++..-.+    ...|.+.|.+....|+|..|+..+.+++.++|++..+++.-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            4556778999999999999999999999976544    456889999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCC
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRN  116 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~  116 (244)
                      .|+..+.++++|...++..+.++..
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            9999999999999999988777543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=3.9e-05  Score=59.21  Aligned_cols=122  Identities=11%  Similarity=-0.044  Sum_probs=106.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCc---HHHHHHHHHHHHHcC
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL-DPEN---GEAWNIIACLHMIKN   98 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~---~~~~~~l~~~~~~~~   98 (244)
                      +-+.+..|++.+|...+.+.++..|.+.-++..--.+++..|+-......+++++.. +|+.   ..+.-.++..+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            445566789999999999999999999888888888899999999999999999876 6655   445566778899999


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523           99 KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                      -|++|.+..+++++++|.+..+....+.++...|++.++.++..+.
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            9999999999999999999999999999999999999998877654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.24  E-value=4.9e-05  Score=65.40  Aligned_cols=117  Identities=17%  Similarity=0.027  Sum_probs=98.1

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      +....+.++..|+...+....|..++++|+.++|..+++..-...+++...+..+-.+|...|+.++|..+|++++..+|
T Consensus        29 l~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P  108 (932)
T KOG2053|consen   29 LAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP  108 (932)
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence            44556667779999999999999999999999999888887777888888999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ  119 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  119 (244)
                      . -.....+-.+|.+.+.|.+-.+.--+..+..|+.+.
T Consensus       109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen  109 S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            8 777777778888888887665555555556666543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=6.6e-06  Score=66.24  Aligned_cols=120  Identities=15%  Similarity=0.116  Sum_probs=99.4

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhhCCC--------ChhHHHHHHHHHHHccCHHHHHHHHHHHHh-c--
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAA-MALNSL--------YPDGWFALGAAALKARDVEKALDVFTRAVQ-L--   79 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~--   79 (244)
                      ..+++.+++..++.++..|++.+|.+.+... +...|.        ...+|.++|.++++.|.|.-+..+|.++++ .  
T Consensus       236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~  315 (696)
T KOG2471|consen  236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS  315 (696)
T ss_pred             cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence            4577889999999999999999999887654 222332        234678999999999999999999999985 1  


Q ss_pred             ------CC---------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           80 ------DP---------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        80 ------~p---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                            .|         ......++.|..+...|+.-.|.++|.+++.....++..|..++.|+...
T Consensus       316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                  11         23467899999999999999999999999999999999999999998753

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.24  E-value=3e-06  Score=43.04  Aligned_cols=32  Identities=19%  Similarity=0.289  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSL   48 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~   48 (244)
                      .+|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.23  E-value=0.00012  Score=61.20  Aligned_cols=163  Identities=14%  Similarity=0.118  Sum_probs=127.6

Q ss_pred             chHHHHHHhhcc----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------------ChhHHHHHHHH
Q 039523            2 MPAMKKLWKFQM----ISQLELRSLARSAYNRGEYETSKILREAAMALNSL------------------YPDGWFALGAA   59 (244)
Q Consensus         2 i~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~   59 (244)
                      ...|+++.+.+=    +-+.+|..-|..-.+..+++.|..+.+++...-..                  +..+|..++..
T Consensus       407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl  486 (835)
T KOG2047|consen  407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL  486 (835)
T ss_pred             HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence            356788877632    23788999999999999999999999999765321                  23578899999


Q ss_pred             HHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH-H--cCCH
Q 039523           60 ALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--RNGWQLWENYSHVAL-D--VGNI  134 (244)
Q Consensus        60 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~~-~--~~~~  134 (244)
                      ....|-++.....|++.+.+.-..|....+.|..+....-+++|.+.|++.+.+.  |+-.++|...-..+. +  -...
T Consensus       487 eEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl  566 (835)
T KOG2047|consen  487 EESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL  566 (835)
T ss_pred             HHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence            9999999999999999999988899999999999999999999999999999985  444556654433222 2  2378


Q ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          135 GQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       135 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      +.|...|+++++..|.  .....+..+...++
T Consensus       567 EraRdLFEqaL~~Cpp--~~aKtiyLlYA~lE  596 (835)
T KOG2047|consen  567 ERARDLFEQALDGCPP--EHAKTIYLLYAKLE  596 (835)
T ss_pred             HHHHHHHHHHHhcCCH--HHHHHHHHHHHHHH
Confidence            8999999999998883  44455555554444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=0.00017  Score=54.82  Aligned_cols=134  Identities=15%  Similarity=0.079  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH-HHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW-NIIACLH   94 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~~l~~~~   94 (244)
                      ...-+.-+......|++..|...+..++...|++..+...++.++...|+.+.|...+...-....+....- ......+
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            344556677888999999999999999999999999999999999999999999998876543332222111 1111233


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .......+. ..+++.+..+|++...-+.+|..+...|+.+.|.+++-..++.+-+
T Consensus       214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            333333322 2345566779999999999999999999999999999999988654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.22  E-value=3e-06  Score=43.03  Aligned_cols=31  Identities=39%  Similarity=0.777  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      +|+.+|.++...|++++|+.+|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.22  E-value=5.2e-06  Score=42.09  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSL   48 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~   48 (244)
                      .+++.+|.+++..|++++|+..|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34455555555555555555555555555553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.21  E-value=4.1e-06  Score=42.47  Aligned_cols=31  Identities=35%  Similarity=0.784  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      +|+.+|.++...|++++|+++|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.21  E-value=6e-05  Score=61.16  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----------------
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP----------------   81 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p----------------   81 (244)
                      .-..+-....+..+..+-++..++|++++|+.+.++..||.-  ......+|.++++++++...                
T Consensus       170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~  247 (539)
T PF04184_consen  170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence            334555666788999999999999999999999999887752  23346677777777665421                


Q ss_pred             -------Cc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           82 -------EN--GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        82 -------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                             .+  ..+...+|.|..+.|+.++|++.++..++..|.  +..+..++..++...+.|.++...+.+.=+
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence                   00  234567899999999999999999999988775  467899999999999999999888888643

The molecular function of this protein is uncertain.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.20  E-value=0.00052  Score=54.38  Aligned_cols=146  Identities=12%  Similarity=0.027  Sum_probs=116.4

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHH
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGE------------YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKAL   70 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   70 (244)
                      .-|++.++.+|++..+|..+....-..-.            .+.-+..+++|++.+|++...+..+-....+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            35788899999999999998876554322            456678999999999999999999989999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCC------------------CCHHHHHHHHHHHH
Q 039523           71 DVFTRAVQLDPENGEAWNIIACLHMI---KNKSKEAFIAFKEALKLKR------------------NGWQLWENYSHVAL  129 (244)
Q Consensus        71 ~~~~~a~~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~p------------------~~~~~~~~la~~~~  129 (244)
                      +-+++++..+|+++..|..+-.....   .-.+......|.++++.-.                  .-..+...+.....
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~  165 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR  165 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999998776554433   3356777777777765411                  01345667778888


Q ss_pred             HcCCHHHHHHHHHHHHhhc
Q 039523          130 DVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       130 ~~~~~~~A~~~~~~al~~~  148 (244)
                      ..|-.+.|+..++-.++++
T Consensus       166 ~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  166 QAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HCCchHHHHHHHHHHHHHH
Confidence            9999999999999999986

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.15  E-value=0.0001  Score=61.31  Aligned_cols=121  Identities=20%  Similarity=0.116  Sum_probs=100.2

Q ss_pred             cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCChHHHH
Q 039523           29 RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE----NGEAWNIIACLHMIKNKSKEAF  104 (244)
Q Consensus        29 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~~~A~  104 (244)
                      ....+.|...+.......|+..-..+..|.++...|+.++|++.+++++.....    ..-.++.++.++..+++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            456788999999999999999999999999999999999999999998853322    2346788999999999999999


Q ss_pred             HHHHHHHhcCCCC-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhcC
Q 039523          105 IAFKEALKLKRNG-WQLWENYSHVALDVGNI-------GQALEAVQMVLNITN  149 (244)
Q Consensus       105 ~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p  149 (244)
                      .++.+..+.+.-+ ....+..|.|+...|+.       ++|...+.++-....
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            9999999876644 34455668889999998       888888888766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.12  E-value=0.00098  Score=53.21  Aligned_cols=137  Identities=15%  Similarity=0.126  Sum_probs=99.6

Q ss_pred             cCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHhhCCCChhHHHHHHHHHHHc---------cCHHHHHHHHHHHHhc
Q 039523           13 MISQLELRSLARSAYN---RGEYETSKILREA-AMALNSLYPDGWFALGAAALKA---------RDVEKALDVFTRAVQL   79 (244)
Q Consensus        13 p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~   79 (244)
                      ++.+.+.+.+|.++-+   .|+.++|+..+.. .....+.+++.+..+|.+|-..         ...++|+..|.++...
T Consensus       176 ~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~  255 (374)
T PF13281_consen  176 ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI  255 (374)
T ss_pred             hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence            3466777888999988   9999999999999 5556677889999999887542         3478999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH-hc-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEAL-KL-----------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~-----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      +|+.... .|++.++...|+-.+...-.++.. .+           .-.+....-.++.+..-.|++++|...+++++++
T Consensus       256 ~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  256 EPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             Cccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            9755433 456666666665333322222211 11           1233445556777888899999999999999999


Q ss_pred             cCC
Q 039523          148 TNN  150 (244)
Q Consensus       148 ~p~  150 (244)
                      .|.
T Consensus       335 ~~~  337 (374)
T PF13281_consen  335 KPP  337 (374)
T ss_pred             CCc
Confidence            877

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=0.0014  Score=47.00  Aligned_cols=111  Identities=17%  Similarity=0.148  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      +...++..+...|++++|+..++.++....+.   .-+-.+++.+...+|++++|...+.....-. -.+..-...|+++
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDil  169 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDIL  169 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHH
Confidence            34577888999999999999999998654432   3356788999999999999999887532211 1233456679999


Q ss_pred             HHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523          129 LDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN  164 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  164 (244)
                      ...|+-++|+..|++++...++ +.....+..-+.+
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~~s-~~~~~~lqmKLn~  204 (207)
T COG2976         170 LAKGDKQEARAAYEKALESDAS-PAAREILQMKLNN  204 (207)
T ss_pred             HHcCchHHHHHHHHHHHHccCC-hHHHHHHHhHHHh
Confidence            9999999999999999998744 3344555544433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.09  E-value=0.0003  Score=48.96  Aligned_cols=114  Identities=18%  Similarity=0.039  Sum_probs=74.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVE-KALDVFTRAVQLDPENGEAWNIIACLHMIKNK   99 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~   99 (244)
                      ..|......++...++..+++++.+.....-.-...       ..|- .....+...      ...+...++..+...|+
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~   77 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAGD   77 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccC
Confidence            345556677888888888888888754321100000       1111 111112211      12456677888889999


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523          100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus       100 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      +++|+..+++++..+|.+-.++..+..++...|+...|+..|++..+.
T Consensus        78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998887554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.09  E-value=4.1e-06  Score=64.45  Aligned_cols=125  Identities=18%  Similarity=0.190  Sum_probs=98.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 039523           20 RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK   99 (244)
Q Consensus        20 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~   99 (244)
                      ...+...+..|+++.|++.|..++.++|.....+...+.+++++++...|+..|..++.++|+....+-..|.+...+|+
T Consensus       118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~  197 (377)
T KOG1308|consen  118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN  197 (377)
T ss_pred             HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence            34456677889999999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523          100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus       100 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      |++|...+..+.+++-+. .+-..+-.+.-..+..++-...+++..
T Consensus       198 ~e~aa~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~  242 (377)
T KOG1308|consen  198 WEEAAHDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAR  242 (377)
T ss_pred             hHHHHHHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHH
Confidence            999999999998886432 222333344444444444444444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.08  E-value=8.2e-05  Score=61.89  Aligned_cols=112  Identities=21%  Similarity=0.115  Sum_probs=92.4

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSL----YPDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      .++++...+..|+.+-.++..|+.+...|+.++|+..+++++.....    ..-.++.+|.++....+|++|.+++.+..
T Consensus       253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~  332 (468)
T PF10300_consen  253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL  332 (468)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence            35667777789999999999999999999999999999998853332    23467899999999999999999999999


Q ss_pred             hcCCCcHHH-HHHHHHHHHHcCCh-------HHHHHHHHHHHhc
Q 039523           78 QLDPENGEA-WNIIACLHMIKNKS-------KEAFIAFKEALKL  113 (244)
Q Consensus        78 ~~~p~~~~~-~~~l~~~~~~~~~~-------~~A~~~~~~a~~~  113 (244)
                      +.+.-+... .+..|.|+...|+.       ++|...+.++-..
T Consensus       333 ~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  333 KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            987765544 45668889999999       7888888776544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=2.9e-05  Score=59.72  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPEN----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH  126 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  126 (244)
                      .-+-.-|.-|++.++|..|...|.+.++..-.+    ...|.+.+.+....|+|..|+.-+.+++..+|.+..+++.-|.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            345667889999999999999999999875433    4578899999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhc
Q 039523          127 VALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       127 ~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      |+..+.++.+|....+..+.++
T Consensus       162 c~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  162 CLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999888877777666554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.07  E-value=0.00032  Score=48.81  Aligned_cols=63  Identities=29%  Similarity=0.399  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK  112 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  112 (244)
                      ..+...++..+...|++++|+..+.+++..+|.+-.+|..+..++...|+...|+..|++...
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            346678888899999999999999999999999999999999999999999999999987654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.00045  Score=50.80  Aligned_cols=134  Identities=12%  Similarity=0.083  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCChh-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH----
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALN-----SLYPD-GWFALGAAALKARDVEKALDVFTRAVQLDPENGE----   85 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~----   85 (244)
                      .+.+..-|+.|...++|+.|-..|.++-...     .++.. .+...+. +++.++..+|+.++++++.+.-+-..    
T Consensus        34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf~~a  112 (288)
T KOG1586|consen   34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRFTMA  112 (288)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4556667778888888888888888886542     22233 3444444 44566999999999999988654433    


Q ss_pred             --HHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           86 --AWNIIACLHMIK-NKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        86 --~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                        .+..+|.+|... .++++|+.+|+++-......      -.++...+......++|.+|+..|++..+..-+
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              344778887654 88999999999987764322      345666777788899999999999999876554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=98.01  E-value=0.0011  Score=53.36  Aligned_cols=145  Identities=14%  Similarity=-0.041  Sum_probs=112.4

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------C------------CCCh---hHHHHH
Q 039523            6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMAL--------------N------------SLYP---DGWFAL   56 (244)
Q Consensus         6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~------------p~~~---~~~~~l   56 (244)
                      -..+..+|.+.+.+..++.++..+|+...|.+.+++++-.              +            ++|-   .+.+..
T Consensus        30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~  109 (360)
T PF04910_consen   30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY  109 (360)
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence            3456779999999999999999999999999999998532              1            1121   245667


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCC-cHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHH
Q 039523           57 GAAALKARDVEKALDVFTRAVQLDPE-NGEAW-NIIACLHMIKNKSKEAFIAFKEALKLKR-----NGWQLWENYSHVAL  129 (244)
Q Consensus        57 a~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~la~~~~  129 (244)
                      ...+.+.|.+..|.++++-.+.++|. +|-.. +.+-....+.++++--++.++.......     .-+..-+..+.++.
T Consensus       110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~  189 (360)
T PF04910_consen  110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF  189 (360)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence            77888999999999999999999998 76544 4444556777888888887776554211     12356677888888


Q ss_pred             HcCCH---------------HHHHHHHHHHHhhcCC
Q 039523          130 DVGNI---------------GQALEAVQMVLNITNN  150 (244)
Q Consensus       130 ~~~~~---------------~~A~~~~~~al~~~p~  150 (244)
                      ..++-               +.|...+.+|+...|.
T Consensus       190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  190 RLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            88888               8999999999999886

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.98  E-value=0.00012  Score=57.23  Aligned_cols=133  Identities=17%  Similarity=0.186  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH------
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYP-----DGWFALGAAALKARDVEKALDVFTRAVQLDPENG------   84 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------   84 (244)
                      .+++.++++.+...-++.+++.+.+..+......+     .+...+|..+.-.+.++++++.|+++++...++.      
T Consensus        83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl  162 (518)
T KOG1941|consen   83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL  162 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence            46788999999999999999998888877643332     4667789999999999999999999998754332      


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRN----G------WQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      .++..+|..+....++++|.-+..++..+..+    +      ..+++.++..+..+|+...|.++.+++.++.
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            47889999999999999999999998877432    2      3567888999999999999999999987764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00072  Score=51.53  Aligned_cols=136  Identities=15%  Similarity=0.066  Sum_probs=96.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD-GWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      |.+.|..++...|++..+...++.++...|+.+.|...+...-........ ........+.+.....+.. .+.+.+..
T Consensus       153 a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~-~l~~~~aa  231 (304)
T COG3118         153 AAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ-DLQRRLAA  231 (304)
T ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHh
Confidence            346788999999999999999999999999999998887765333332211 1111123333333333322 35666778


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHH
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNIGQA  137 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~A  137 (244)
                      +|++....+.++..+...|+.++|.+.+-..++.+..  +..+...+-.++...|.-+..
T Consensus       232 dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~  291 (304)
T COG3118         232 DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL  291 (304)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence            9999999999999999999999999999888887543  455566666666666644333

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.89  E-value=6.2e-06  Score=63.49  Aligned_cols=94  Identities=16%  Similarity=0.242  Sum_probs=86.8

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 039523           57 GAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ  136 (244)
Q Consensus        57 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~  136 (244)
                      +.-.+..|.+++|++.|..++.++|.....+...+.++.++++...|+.-+..++.++|+...-+-.-+.....+|++++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            44456678999999999999999999999999999999999999999999999999999999888889999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 039523          137 ALEAVQMVLNITNN  150 (244)
Q Consensus       137 A~~~~~~al~~~p~  150 (244)
                      |...+..+.+++-+
T Consensus       201 aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  201 AAHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHHhcccc
Confidence            99999999887644

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.002  Score=47.86  Aligned_cols=146  Identities=20%  Similarity=0.084  Sum_probs=69.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhC-----CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HHHHHHHH
Q 039523           23 ARSAYNRGEYETSKILREAAMALN-----SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN------GEAWNIIA   91 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~   91 (244)
                      |........+.++..+++++....     |+....-...+--.....+.++|++.|++++.+--.+      .+.+...+
T Consensus        78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s  157 (308)
T KOG1585|consen   78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS  157 (308)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            333334444555555555554432     2222222222333344445555555555555432211      12333445


Q ss_pred             HHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHH
Q 039523           92 CLHMIKNKSKEAFIAFKEALKL------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN-KRIDTELLERIVLN  164 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~  164 (244)
                      .++.+..++.+|-..+.+-...      .++....+.....++....+|..|..+++..-.+..- .+.+-..++.+++.
T Consensus       158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a  237 (308)
T KOG1585|consen  158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA  237 (308)
T ss_pred             hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence            5556666666655554432211      2222333444455556666777777777765544211 34455666666666


Q ss_pred             hccc
Q 039523          165 LEGR  168 (244)
Q Consensus       165 ~~~~  168 (244)
                      +.+.
T Consensus       238 yd~g  241 (308)
T KOG1585|consen  238 YDEG  241 (308)
T ss_pred             hccC
Confidence            6643

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.00021  Score=57.99  Aligned_cols=141  Identities=13%  Similarity=0.057  Sum_probs=110.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCC--------cHHHHHH
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV-QLDPE--------NGEAWNI   89 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~p~--------~~~~~~~   89 (244)
                      ....-..+.+..+...+....+.+.....+.+.+....+..++-.|++.+|.+.+...- ...|.        ..-.|.+
T Consensus       209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN  288 (696)
T KOG2471|consen  209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN  288 (696)
T ss_pred             hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence            34445566777777778777888888888889999999999999999999999876542 22232        2235789


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhc---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           90 IACLHMIKNKSKEAFIAFKEALKL---------KR---------NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        90 l~~~~~~~~~~~~A~~~~~~a~~~---------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      +|.+++..|.|.-+..+|.++++-         .|         ....++++.|..+...|+.-.|.++|.++....-.+
T Consensus       289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n  368 (696)
T KOG2471|consen  289 LGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN  368 (696)
T ss_pred             cceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999961         11         346789999999999999999999999999876665


Q ss_pred             hhhHHHHH
Q 039523          152 RIDTELLE  159 (244)
Q Consensus       152 ~~~~~~l~  159 (244)
                      +.-|-.+.
T Consensus       369 PrlWLRlA  376 (696)
T KOG2471|consen  369 PRLWLRLA  376 (696)
T ss_pred             cHHHHHHH
Confidence            55554444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.0019  Score=48.01  Aligned_cols=130  Identities=15%  Similarity=0.132  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCcH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKALDVFTRAVQL-----DPENG   84 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~   84 (244)
                      +..+..-+..|...++|++|..++.++.+-..++.      .++...|.+......+.++..+++++...     .|+..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            45566777888889999999999999997655442      35567777788889999999999999875     34444


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      ..-...+-=..+..+.++|+..|++++.+-..+      ...+-..++++.....+.+|-..+.+-.
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~  177 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG  177 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence            444445555667788999999999998774332      3456667888999999999877766543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.83  E-value=0.0063  Score=48.40  Aligned_cols=127  Identities=20%  Similarity=0.103  Sum_probs=83.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHH-----------------------------
Q 039523           25 SAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR-----------------------------   75 (244)
Q Consensus        25 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----------------------------   75 (244)
                      .....|..+.|+.+-+++....|.-+.++...-......|+++.|+++.+.                             
T Consensus       163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld  242 (531)
T COG3898         163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD  242 (531)
T ss_pred             HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence            334567777777777777777777777766666666677777777776652                             


Q ss_pred             ------------HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------------------
Q 039523           76 ------------AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-----------------------------  114 (244)
Q Consensus        76 ------------a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------  114 (244)
                                  +.++.|+...+-..-+..+++.|+..++-..++.+.+..                             
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~  322 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLE  322 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence                        233335555555556666777777777766666665554                             


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523          115 ---RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus       115 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                         |++.+.....+......|++..|..--+.+.+..|..
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre  362 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE  362 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh
Confidence               4455555666666677777777777777777777763

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.00063  Score=55.34  Aligned_cols=91  Identities=19%  Similarity=0.233  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q 039523           35 SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK-SKEAFIAFKEALKL  113 (244)
Q Consensus        35 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~  113 (244)
                      -...|++++...+.+...|........+.+.+.+-...|.+++..+|++++.|...|...+.-+. .+.|...+.++++.
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            35578888888888999999998888888889999999999999999999999999888877776 88999999999999


Q ss_pred             CCCCHHHHHHHH
Q 039523          114 KRNGWQLWENYS  125 (244)
Q Consensus       114 ~p~~~~~~~~la  125 (244)
                      +|+++..|...-
T Consensus       170 npdsp~Lw~eyf  181 (568)
T KOG2396|consen  170 NPDSPKLWKEYF  181 (568)
T ss_pred             CCCChHHHHHHH
Confidence            999988776543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.80  E-value=5.8e-05  Score=38.14  Aligned_cols=31  Identities=26%  Similarity=0.277  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNS   47 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p   47 (244)
                      .+|+.+|.++...|++++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455555555555555555555555555555

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.77  E-value=0.0033  Score=50.45  Aligned_cols=139  Identities=17%  Similarity=0.195  Sum_probs=108.7

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C-C---
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNS----LYPDGWFALGAAALKARDVEKALDVFTRAVQLD-P-E---   82 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~---   82 (244)
                      .......|...+......|.++.|...+.++...++    ..+.+....+......|+..+|+..++..+... . .   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            345677899999999999999999999999988652    246778888999999999999999998887711 0 0   


Q ss_pred             -----------------------------cHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523           83 -----------------------------NGEAWNIIACLHMIK------NKSKEAFIAFKEALKLKRNGWQLWENYSHV  127 (244)
Q Consensus        83 -----------------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~  127 (244)
                                                   ...++..+|......      +..+++...|.++++..|+...+|+.+|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                         124566677777777      888999999999999999999999999888


Q ss_pred             HHHcCC-----------------HHHHHHHHHHHHhhcCC
Q 039523          128 ALDVGN-----------------IGQALEAVQMVLNITNN  150 (244)
Q Consensus       128 ~~~~~~-----------------~~~A~~~~~~al~~~p~  150 (244)
                      +...=+                 ...|+.+|-+++...++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            765421                 12467777777777766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.74  E-value=0.002  Score=46.16  Aligned_cols=111  Identities=14%  Similarity=0.107  Sum_probs=83.9

Q ss_pred             HHHHhhccCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            6 KKLWKFQMISQL---ELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         6 ~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      ++....+|.+..   +-..+|..+...+++++|+..++.++....+.   .-+-..+|.+....|.+++|+..+......
T Consensus        76 ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~  155 (207)
T COG2976          76 EKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE  155 (207)
T ss_pred             HHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence            344444545433   34678899999999999999999998665433   235678999999999999999988764321


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      + -.+..-...|.++...|+-++|+..|++++...++.
T Consensus       156 ~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         156 S-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             c-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            1 122345567999999999999999999999997554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.72  E-value=0.00011  Score=37.03  Aligned_cols=30  Identities=20%  Similarity=0.339  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523          120 LWENYSHVALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus       120 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p  149 (244)
                      +|+.+|.++..+|++++|..+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455566666666666666666666665555

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.62  E-value=0.0009  Score=57.81  Aligned_cols=81  Identities=11%  Similarity=0.103  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                      .|...|......|+.+.|+.+|..+-        -|+.+..+.+.+|+.++|-...+     ...+..+.+.+|+.|...
T Consensus       914 L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~  980 (1416)
T KOG3617|consen  914 LYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYEND  980 (1416)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhh
Confidence            33444444444444444444444332        13333344444444444433322     245667888999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 039523          132 GNIGQALEAVQMVL  145 (244)
Q Consensus       132 ~~~~~A~~~~~~al  145 (244)
                      |++.+|+.+|.+|-
T Consensus       981 g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  981 GDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877663

>PRK10941 hypothetical protein; Provisional

Probab=97.61  E-value=0.0016  Score=49.94  Aligned_cols=69  Identities=16%  Similarity=0.019  Sum_probs=41.6

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 039523           54 FALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWE  122 (244)
Q Consensus        54 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  122 (244)
                      .++-.++.+.++++.|+.+.+..+...|+++.-+...|.++.++|.+..|..-++..++..|+++.+-.
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            345555566666666666666666666666666666666666666666666666666666665554433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.59  E-value=0.0016  Score=41.17  Aligned_cols=44  Identities=14%  Similarity=0.016  Sum_probs=21.8

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS   47 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p   47 (244)
                      -+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++
T Consensus        10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr   53 (90)
T PF14561_consen   10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR   53 (90)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            34445555555555555555555555555555555555555544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.58  E-value=0.0085  Score=51.26  Aligned_cols=139  Identities=18%  Similarity=0.109  Sum_probs=107.7

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhh-----CCCChhHHHHHHHHHHHcc-----CHHH
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNR-----GEYETSKILREAAMAL-----NSLYPDGWFALGAAALKAR-----DVEK   68 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~   68 (244)
                      +|+.+.+  -.+..+...+|.++..-     .+.+.|+.+++.+...     ...++.+.+.+|.+|.+..     ++..
T Consensus       234 ~~~~~a~--~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~  311 (552)
T KOG1550|consen  234 YYREAAK--LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEK  311 (552)
T ss_pred             HHHHHHh--hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHH
Confidence            3444433  35778888888888764     7899999999999771     1125667889999999853     6788


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 039523           69 ALDVFTRAVQLDPENGEAWNIIACLHMIKN---KSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAV  141 (244)
Q Consensus        69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~  141 (244)
                      |..+|.++.+..  ++++.+.+|.++....   ++..|..+|..|....  +..+.+.++.|+..    ..+...|..++
T Consensus       312 A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~  387 (552)
T KOG1550|consen  312 ALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYY  387 (552)
T ss_pred             HHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence            999999988765  5677788888887665   5789999999887764  67788889988865    34788999999


Q ss_pred             HHHHhhc
Q 039523          142 QMVLNIT  148 (244)
Q Consensus       142 ~~al~~~  148 (244)
                      +++-+..
T Consensus       388 k~aA~~g  394 (552)
T KOG1550|consen  388 KKAAEKG  394 (552)
T ss_pred             HHHHHcc
Confidence            9998887

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.56  E-value=0.011  Score=47.00  Aligned_cols=141  Identities=13%  Similarity=0.061  Sum_probs=113.3

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHH-HHHHHHHHhcCC
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKA-LDVFTRAVQLDP   81 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~p   81 (244)
                      ..-.+++++.|+...+-..-+..++..|+..++-..++.+-+..| ++.++.  ..++.+.|+.... .+-..+.-.+.|
T Consensus       250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~--lY~~ar~gdta~dRlkRa~~L~slk~  326 (531)
T COG3898         250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIAL--LYVRARSGDTALDRLKRAKKLESLKP  326 (531)
T ss_pred             HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcCc
Confidence            445677888999999999999999999999999999999999999 665543  3344555654433 233445556789


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-GNIGQALEAVQMVLNI  147 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~  147 (244)
                      ++.......+...+..|++..|..--+.+....|.. .++..++.+.... |+-.+....+.++++-
T Consensus       327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         327 NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999975 4566777777655 9999999999999974

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.56  E-value=0.0022  Score=52.38  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 039523           67 EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN-IGQALEAVQMVL  145 (244)
Q Consensus        67 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al  145 (244)
                      ..-...|+.++...+.++..|........+.+.+.+-...|.+++..+|+++.+|...|.-.+..+. .+.|...+.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3446678899999999999999999988888889999999999999999999999999998887775 999999999999


Q ss_pred             hhcCCchhhHHHHHH
Q 039523          146 NITNNKRIDTELLER  160 (244)
Q Consensus       146 ~~~p~~~~~~~~l~~  160 (244)
                      +.+|+.+.-+...-+
T Consensus       168 R~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFR  182 (568)
T ss_pred             hcCCCChHHHHHHHH
Confidence            999997755544433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.55  E-value=0.0044  Score=43.24  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                      .+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+..+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            44555566666777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523          132 GNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       132 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      |+..== .+-.++++..++ +.....+..+.+
T Consensus        92 ~D~~Wr-~~A~evle~~~d-~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   92 GDPSWR-RYADEVLESGAD-PDARALVRALLA  121 (160)
T ss_pred             CChHHH-HHHHHHHhcCCC-hHHHHHHHHHHH
Confidence            765532 222334444332 334444444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.55  E-value=0.0058  Score=48.93  Aligned_cols=118  Identities=15%  Similarity=0.098  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCChhHHHHHHHHHHH---ccCHHHHHHHHHH-HHhcCCCcHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMAL----NSLYPDGWFALGAAALK---ARDVEKALDVFTR-AVQLDPENGEA   86 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-a~~~~p~~~~~   86 (244)
                      ++.+...+=..|....+|+.-+...+..-..    .++.+.+.+.+|.++-+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4566677777888889999888888877666    45667778888888888   8999999999888 55566778888


Q ss_pred             HHHHHHHHHH---------cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523           87 WNIIACLHMI---------KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN  133 (244)
Q Consensus        87 ~~~l~~~~~~---------~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~  133 (244)
                      +..+|.+|..         ....++|+..|.++.+.+|+. ..=.|++.++...|.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence            8888888742         223678899999999988643 344556666666664

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.54  E-value=0.0095  Score=47.29  Aligned_cols=112  Identities=13%  Similarity=0.104  Sum_probs=91.9

Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 039523           37 ILREAAMALNSLYPDGWFALGAAALKARD------------VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAF  104 (244)
Q Consensus        37 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~  104 (244)
                      ..+++.++.+|.+..+|..++......-.            .+..+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788899999999999998877665533            456778899999999999999988888888888999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhc
Q 039523          105 IAFKEALKLKRNGWQLWENYSHVALD---VGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       105 ~~~~~a~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~  148 (244)
                      +-+++++..+|++..+|..+-.....   .-.+......|.++++.-
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            99999999999999998877665544   235777888888877653

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.54  E-value=0.0039  Score=43.48  Aligned_cols=86  Identities=16%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      ...+..+...-...++.+++...+...-.+.|..+.+-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            45677778888889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HcCChH
Q 039523           96 IKNKSK  101 (244)
Q Consensus        96 ~~~~~~  101 (244)
                      .+|+.+
T Consensus        90 ~~~D~~   95 (160)
T PF09613_consen   90 ALGDPS   95 (160)
T ss_pred             HcCChH
Confidence            888753

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.53  E-value=0.0031  Score=40.96  Aligned_cols=103  Identities=13%  Similarity=0.103  Sum_probs=61.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHH---HHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523           22 LARSAYNRGEYETSKILREAAMALNSLYPDGW---FALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN   98 (244)
Q Consensus        22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~   98 (244)
                      +|..++..|++-+|++..+..+...+++...|   ..-|.++.            ..+...+..+....+.         
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yL---------   60 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYL---------   60 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHH---------
Confidence            46778888999999999999888887776543   23333332            2222222222222222         


Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           99 KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                        -.+++++.++..+.|..+..++.+|.-+-....|+++..--++++.+
T Consensus        61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence              24566666666666666666666666655555666666666666554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.52  E-value=0.0006  Score=52.26  Aligned_cols=75  Identities=23%  Similarity=0.231  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC   92 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~   92 (244)
                      .-...|.-....|+.++|...|+.++.++|.++.++..+|......++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            344556667788999999999999999999999999999999999999999999999999999999888777654

>PRK10941 hypothetical protein; Provisional

Probab=97.51  E-value=0.0029  Score=48.54  Aligned_cols=82  Identities=10%  Similarity=0.073  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      ...++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++ ....+......+
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp-~a~~ik~ql~~l  261 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP-ISEMIRAQIHSI  261 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch-hHHHHHHHHHHH
Confidence            4556777899999999999999999999999999999999999999999999999999999999977 455566655555


Q ss_pred             ccc
Q 039523          166 EGR  168 (244)
Q Consensus       166 ~~~  168 (244)
                      +..
T Consensus       262 ~~~  264 (269)
T PRK10941        262 EQK  264 (269)
T ss_pred             hhc
Confidence            543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.49  E-value=0.00027  Score=35.23  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSL   48 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~   48 (244)
                      +++.+|.++...|++++|+..|++.+...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3455555555555555555555555555553

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.49  E-value=0.012  Score=48.67  Aligned_cols=139  Identities=15%  Similarity=0.199  Sum_probs=102.0

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH
Q 039523            6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGE   85 (244)
Q Consensus         6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~   85 (244)
                      ++-++.+|.+..+|..|-+.+..+ .+++....|++.....|..+.+|.......+..++|+.-..+|.+++..-= +.+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence            667888999999999999988877 999999999999999999999999999999999999999999999886432 244


Q ss_pred             HHHH-HHHHHHHcCChHHHHHHHHHH-------HhcCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHh
Q 039523           86 AWNI-IACLHMIKNKSKEAFIAFKEA-------LKLKRNGWQLWENYSHVAL---------DVGNIGQALEAVQMVLN  146 (244)
Q Consensus        86 ~~~~-l~~~~~~~~~~~~A~~~~~~a-------~~~~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~al~  146 (244)
                      .|.. +..+....|+...+....-++       +..++.+..+|...+..+.         ...+.+.-+..|++++.
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~  165 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV  165 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence            5533 334444445544433332222       2346666777777666543         22355566777888774

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.47  E-value=0.00095  Score=55.49  Aligned_cols=107  Identities=21%  Similarity=0.138  Sum_probs=91.4

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 039523           57 GAAALKARDVEKALDVFTRAVQLDPENG-EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG  135 (244)
Q Consensus        57 a~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~  135 (244)
                      |....-.|+...|..++..++...|... ....+++.++.+-|-..+|...+.+++.+....+...+.+|..+..+.+.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            3334457999999999999999888543 357789999999999999999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523          136 QALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       136 ~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      .|+++++.|++.+|+.+....-+..+.-
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999998776666655443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.47  E-value=0.0011  Score=37.05  Aligned_cols=47  Identities=17%  Similarity=0.131  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523          119 QLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus       119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      ++++.+|..+.+.|+|++|..+.+.++++.|++.........+...+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            35566777777777777777777777777777665554444444433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.43  E-value=0.005  Score=38.89  Aligned_cols=65  Identities=29%  Similarity=0.246  Sum_probs=36.3

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCh
Q 039523           36 KILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN--GEAWNIIACLHMIKNKS  100 (244)
Q Consensus        36 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~  100 (244)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..+.-.+-.++...|.-
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            445566666677776777777777777777777777776666666543  33333444444444443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.42  E-value=0.038  Score=43.23  Aligned_cols=132  Identities=23%  Similarity=0.139  Sum_probs=76.2

Q ss_pred             ccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHcc-------CHHHHHHHHHHHHhc
Q 039523           12 QMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLY-PDGWFALGAAALKAR-------DVEKALDVFTRAVQL   79 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~   79 (244)
                      +...+.+.+.+|..+..    ..+..+|..+|+++....-.. ..+.+.++.++..-+       +...|...|.++...
T Consensus       105 ~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~  184 (292)
T COG0790         105 ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL  184 (292)
T ss_pred             hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence            34556666667777665    346777777777776664323 233555565555431       222566666666554


Q ss_pred             CCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------------CHHHHHHH
Q 039523           80 DPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG---------------NIGQALEA  140 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~---------------~~~~A~~~  140 (244)
                      .  ++.+.+.+|.+|..    ..++.+|...|.++.+...  ....+.++ ++...|               +...|...
T Consensus       185 ~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~  259 (292)
T COG0790         185 G--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEW  259 (292)
T ss_pred             c--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHH
Confidence            4  55666666666543    2356677777777766654  56666666 444444               55555666


Q ss_pred             HHHHHhhc
Q 039523          141 VQMVLNIT  148 (244)
Q Consensus       141 ~~~al~~~  148 (244)
                      +.++....
T Consensus       260 ~~~~~~~~  267 (292)
T COG0790         260 LQKACELG  267 (292)
T ss_pred             HHHHHHcC
Confidence            55555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.42  E-value=0.00037  Score=35.73  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=14.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 039523           19 LRSLARSAYNRGEYETSKILREAAM   43 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al   43 (244)
                      +..+|.+|...|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555666666666666666666643

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.34  E-value=0.00045  Score=35.37  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHH
Q 039523           53 WFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      +..||.++...|++++|+++|+++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445555555555555555555553

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.31  E-value=0.0014  Score=50.41  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=61.4

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523           55 ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH  126 (244)
Q Consensus        55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  126 (244)
                      ..|.-..+.|+.++|...|+.++++.|++++++..+|......++.-+|-.+|-+++.+.|.+..++.+.++
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            445556678999999999999999999999999999999988899999999999999999988877766543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.30  E-value=0.0017  Score=36.32  Aligned_cols=29  Identities=24%  Similarity=0.359  Sum_probs=10.6

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523           56 LGAAALKARDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus        56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      +|..+.+.|+|++|.++.+.+++++|++.
T Consensus         7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    7 LAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            33333333334333333333333333333

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.009  Score=44.95  Aligned_cols=163  Identities=10%  Similarity=0.066  Sum_probs=93.3

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHH-HHHHHHHHHHhc
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYN-RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVE-KALDVFTRAVQL   79 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~   79 (244)
                      +.+-+.++.++|.+-.+|...-.+... ..+..+-++++.+.+..+|.|-.+|...-.+....|+.. .-++....++..
T Consensus        63 l~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~  142 (318)
T KOG0530|consen   63 LQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD  142 (318)
T ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc
Confidence            344455555566665555544444433 234555666666666667777666666666666666665 556666666666


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhhcCCchh
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD-VG-----NIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~~-----~~~~A~~~~~~al~~~p~~~~  153 (244)
                      +..+..+|-..-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+..+.+...|++..
T Consensus       143 DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS  222 (318)
T KOG0530|consen  143 DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES  222 (318)
T ss_pred             cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence            666666666666666666666666666666666654433333322111111 11     123334566666777777666


Q ss_pred             hHHHHHHHHHH
Q 039523          154 DTELLERIVLN  164 (244)
Q Consensus       154 ~~~~l~~~~~~  164 (244)
                      .+..|.-+...
T Consensus       223 aWnYL~G~l~~  233 (318)
T KOG0530|consen  223 AWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHHHHHh
Confidence            66666655554

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.27  E-value=0.0035  Score=51.14  Aligned_cols=125  Identities=10%  Similarity=-0.082  Sum_probs=101.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 039523           26 AYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI  105 (244)
Q Consensus        26 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~  105 (244)
                      .+..|+...|......++...|..|......+.+....|.|+.+...+.-+-..-.....+.-.+-......|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            35678899999999999999999998888889999999999999988876655444444444444566778899999998


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       106 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ..+-.+.-.-.++++....+.....+|-++++...|++.+.++|.
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            888888777777888777777888888999999999999998876

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.22  E-value=0.0063  Score=39.51  Aligned_cols=32  Identities=16%  Similarity=0.295  Sum_probs=23.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH
Q 039523           56 LGAAALKARDVEKALDVFTRAVQLDPENGEAW   87 (244)
Q Consensus        56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~   87 (244)
                      .|.-++..|++-+|++..+..+...+++...|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~   33 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW   33 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchH
Confidence            35667788888888888888888777666443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.21  E-value=0.0053  Score=51.28  Aligned_cols=114  Identities=11%  Similarity=-0.025  Sum_probs=93.0

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh--hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523            6 KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP--DGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus         6 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      ..+++.+|.++..+..-+.....+|+..+|..++..++...|...  -++..+|.++.+.|...+|--.+..++...|..
T Consensus       203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~  282 (886)
T KOG4507|consen  203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF  282 (886)
T ss_pred             HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence            345566676666665555555668999999999999999877653  367789999999999999999998888888877


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ  119 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  119 (244)
                      ..-++.++.++..+|.+...+.+|..+.+..|....
T Consensus       283 t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  283 TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            667899999999999999999999999998886533

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.20  E-value=0.085  Score=43.97  Aligned_cols=116  Identities=12%  Similarity=0.077  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 039523           32 YETSKILREAAMALNSLYP-DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL-HMIKNKSKEAFIAFKE  109 (244)
Q Consensus        32 ~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~  109 (244)
                      ++.....+.+++.....++ -+|+.+-..-.+..-...|...|.++-+.......++..-|.+ |...++..-|...|+-
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL  426 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL  426 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence            5555666666666543332 3455555556666666777777777665544444444444433 4456777777777777


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523          110 ALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus       110 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      .++..++.+..-......+...|+-..+...|++++..
T Consensus       427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            77777777777777777777777777777777777765

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.07  E-value=0.018  Score=39.63  Aligned_cols=83  Identities=16%  Similarity=-0.002  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG  132 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~  132 (244)
                      +......-...++.+++...+...--+.|+.+..-..-|.++...|+|.+|+..+++.....+..+..--.++.|+..+|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444445557778888887777777788888887778888888888888888888887777777777777788888887


Q ss_pred             CHH
Q 039523          133 NIG  135 (244)
Q Consensus       133 ~~~  135 (244)
                      |..
T Consensus        93 Dp~   95 (153)
T TIGR02561        93 DAE   95 (153)
T ss_pred             ChH
Confidence            765

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.07  E-value=0.0013  Score=48.34  Aligned_cols=61  Identities=28%  Similarity=0.497  Sum_probs=53.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523           24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus        24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      ......++.+.|.+.|.+++...|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456778899999999999999999999999999999999999999999999999998663

>smart00028 TPR Tetratricopeptide repeats

Probab=97.03  E-value=0.0017  Score=31.49  Aligned_cols=21  Identities=38%  Similarity=0.618  Sum_probs=7.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHH
Q 039523           57 GAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus        57 a~~~~~~g~~~~A~~~~~~a~   77 (244)
                      |.++...|++++|...+.+++
T Consensus         8 a~~~~~~~~~~~a~~~~~~~~   28 (34)
T smart00028        8 GNAYLKLGDYDEALEYYEKAL   28 (34)
T ss_pred             HHHHHHHhhHHHHHHHHHHHH
Confidence            333333333333333333333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=97.02  E-value=0.0015  Score=31.69  Aligned_cols=30  Identities=20%  Similarity=0.174  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKLKR  115 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  115 (244)
                      ++..+|.++...|++++|+..+.++++..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.096  Score=39.67  Aligned_cols=124  Identities=15%  Similarity=0.160  Sum_probs=108.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH-H
Q 039523           25 SAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK-E  102 (244)
Q Consensus        25 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~-~  102 (244)
                      ++.....-..|+.....++.++|.+-.+|...-.++...+ +..+-++++...+.-+|.+..+|...-.+....|+.. .
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r  131 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR  131 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence            4445667788999999999999999999887777766654 5677889999999999999999999999999999887 7


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523          103 AFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       103 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      -++..+.++..+..+..+|...-.++..-+.++.-+.+..+.++.+
T Consensus       132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D  177 (318)
T KOG0530|consen  132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED  177 (318)
T ss_pred             hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            7888999999999999999999999999999999999888888765

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.96  E-value=0.0028  Score=48.75  Aligned_cols=88  Identities=16%  Similarity=0.108  Sum_probs=67.4

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           73 FTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN-YSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        73 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      |.++....|+++..|...+....+.|-|.+-...|.+++..+|.+++.|.. .+.-+...++++.++..+.++++.+|+.
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            334555567888888888888888888888888888888888888888877 4455667788888888888888888887


Q ss_pred             hhhHHHHHH
Q 039523          152 RIDTELLER  160 (244)
Q Consensus       152 ~~~~~~l~~  160 (244)
                      +..|...-+
T Consensus       176 p~iw~eyfr  184 (435)
T COG5191         176 PRIWIEYFR  184 (435)
T ss_pred             chHHHHHHH
Confidence            765554433

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.03  Score=46.92  Aligned_cols=116  Identities=16%  Similarity=0.045  Sum_probs=69.0

Q ss_pred             ccCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHH-HHhcCCCcHHHHH
Q 039523           12 QMISQLELRS--LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR-AVQLDPENGEAWN   88 (244)
Q Consensus        12 ~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~~p~~~~~~~   88 (244)
                      +|.++..+..  +...+...+....+.......+..+|+++.+..+++......|....+...+.. +....|++..+..
T Consensus        61 ~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~  140 (620)
T COG3914          61 NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG  140 (620)
T ss_pred             CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence            4444444322  355555566666666666777777777777777777666666665555444443 5666666655444


Q ss_pred             HH------HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523           89 II------ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV  127 (244)
Q Consensus        89 ~l------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~  127 (244)
                      .+      +......|+..++.....++....|.++.+...+...
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            33      6666666666666666666666666665554444444

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.93  E-value=0.0033  Score=48.43  Aligned_cols=86  Identities=15%  Similarity=0.228  Sum_probs=71.8

Q ss_pred             HHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523           41 AAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI-IACLHMIKNKSKEAFIAFKEALKLKRNGWQ  119 (244)
Q Consensus        41 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  119 (244)
                      ++....|+++..|...+....+.|-+.+-...|.++++.+|.+.+.|.. .+.-+...++++.+...|.++++.+|+++.
T Consensus        98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~  177 (435)
T COG5191          98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR  177 (435)
T ss_pred             hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence            3444457788899998888888899999999999999999999999987 445567889999999999999999999988


Q ss_pred             HHHHHHH
Q 039523          120 LWENYSH  126 (244)
Q Consensus       120 ~~~~la~  126 (244)
                      .|...-.
T Consensus       178 iw~eyfr  184 (435)
T COG5191         178 IWIEYFR  184 (435)
T ss_pred             HHHHHHH
Confidence            8866543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.054  Score=45.47  Aligned_cols=123  Identities=16%  Similarity=0.102  Sum_probs=98.9

Q ss_pred             CCHHHHHHHHHHHHhhCCCChhHHHH--HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 039523           30 GEYETSKILREAAMALNSLYPDGWFA--LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAF  107 (244)
Q Consensus        30 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  107 (244)
                      +....++..+...+..++.++..+..  ++..+...+....+.......+..+|++..++.+++..+...|....+...+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            34444777777778888888876443  4777777888889999999999999999999999999988877776666665


Q ss_pred             HH-HHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523          108 KE-ALKLKRNGWQLWENY------SHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus       108 ~~-a~~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      .. +....|++......+      +.....+|+..++.....++.+..|..+
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~  176 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP  176 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence            55 888888887665544      8888889999999999999999998854

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.89  E-value=0.0056  Score=50.52  Aligned_cols=103  Identities=14%  Similarity=-0.074  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA---RDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      ..+-...-|.-.+..+....|+..|.+++...|.....+.+.+.++++.   |+.-.|+..+..++.++|....+|+.++
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la  452 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA  452 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence            3444455555566667788899999999999999999999998888875   5667888888899999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      .++...+++.+|+.+...+....|.+
T Consensus       453 ~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  453 RALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            99999999999999988777777754

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.87  E-value=0.099  Score=44.89  Aligned_cols=139  Identities=17%  Similarity=0.068  Sum_probs=97.6

Q ss_pred             chHHHHHHh-----hccCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc---CHHH
Q 039523            2 MPAMKKLWK-----FQMISQLELRSLARSAYNRG-----EYETSKILREAAMALNSLYPDGWFALGAAALKAR---DVEK   68 (244)
Q Consensus         2 i~~~~~al~-----~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~   68 (244)
                      +.+|+.+.+     ..-.++.+.+.+|.+|....     +...|..+|.++-...  ++.+.+.+|.++....   ++..
T Consensus       269 ~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~  346 (552)
T KOG1550|consen  269 IEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRR  346 (552)
T ss_pred             HHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHH
Confidence            455555554     01225667889999999843     7888999999998775  5667778888888766   6789


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 039523           69 ALDVFTRAVQLDPENGEAWNIIACLHMIK----NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-GNIGQALEAVQM  143 (244)
Q Consensus        69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~  143 (244)
                      |.++|..+.+..  +..+.+.+|.|+..-    .+...|..++.++.+..  .+.+...++.++..- +++..+.-.+..
T Consensus       347 A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~  422 (552)
T KOG1550|consen  347 AFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLY  422 (552)
T ss_pred             HHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHH
Confidence            999999988654  677888888887643    46789999999999987  344444444443332 666665554444


Q ss_pred             HHh
Q 039523          144 VLN  146 (244)
Q Consensus       144 al~  146 (244)
                      ...
T Consensus       423 ~a~  425 (552)
T KOG1550|consen  423 LAE  425 (552)
T ss_pred             HHH
Confidence            433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.85  E-value=0.057  Score=47.34  Aligned_cols=131  Identities=18%  Similarity=0.117  Sum_probs=88.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------------------CCCChhHHHHHHHHHHHccCHHHHHHH
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMAL---------------------NSLYPDGWFALGAAALKARDVEKALDV   72 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~   72 (244)
                      .++..|...|......|+.+.|+.+|..+-..                     ...+..+.+.+|..|...|++.+|+..
T Consensus       910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F  989 (1416)
T KOG3617|consen  910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF  989 (1416)
T ss_pred             cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34566777788888999999999999987432                     244567889999999999999999998


Q ss_pred             HHHHHh------cCCCc--HHH------------HHHHHHHHHHcC-ChHHHHHHHHHH------Hh-------------
Q 039523           73 FTRAVQ------LDPEN--GEA------------WNIIACLHMIKN-KSKEAFIAFKEA------LK-------------  112 (244)
Q Consensus        73 ~~~a~~------~~p~~--~~~------------~~~l~~~~~~~~-~~~~A~~~~~~a------~~-------------  112 (244)
                      |.++-.      +...+  .+-            ....+..|...| ..+.|+..|.+|      ++             
T Consensus       990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen  990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence            887643      32211  111            122233344444 555555555432      11             


Q ss_pred             ----cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523          113 ----LKR-NGWQLWENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus       113 ----~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                          ++| .++..+...+..+....+|++|...+-.+
T Consensus      1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                123 46888889999999999999997765444

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.81  E-value=0.17  Score=39.60  Aligned_cols=131  Identities=14%  Similarity=0.080  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCc-HH
Q 039523           15 SQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDVFTRAVQLDPEN-GE   85 (244)
Q Consensus        15 ~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~-~~   85 (244)
                      ++.....++..|..    ..+..+|..+|+.+  ....++.+.+.+|.++..    ..+..+|..+|+++....-.. ..
T Consensus        72 ~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~  149 (292)
T COG0790          72 DAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAAL  149 (292)
T ss_pred             ChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHH
Confidence            34677888888876    45688899999944  445577888999999988    559999999999999875443 34


Q ss_pred             HHHHHHHHHHHcC-------ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcC
Q 039523           86 AWNIIACLHMIKN-------KSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNITN  149 (244)
Q Consensus        86 ~~~~l~~~~~~~~-------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p  149 (244)
                      +.+.+|.++..-+       +...|...|.++-...  ++.+...+|.+|..    ..++++|..+|.++-+...
T Consensus       150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            4777888776642       2237888888887766  67888899988765    3489999999999998765

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.15  Score=42.87  Aligned_cols=138  Identities=14%  Similarity=-0.002  Sum_probs=100.9

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------------------CCCChh---HHHHHHHHHHHccCHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMAL---------------------NSLYPD---GWFALGAAALKARDVE   67 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~---~~~~la~~~~~~g~~~   67 (244)
                      .|.+...+..++.++..+|+.+.|.....+++=.                     .|.|-.   +.+..-..+.+.|.+.
T Consensus       280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r  359 (665)
T KOG2422|consen  280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR  359 (665)
T ss_pred             CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence            6788999999999999999999999988887632                     122222   2334445566789999


Q ss_pred             HHHHHHHHHHhcCCC-cHHHHHHHHHHH-HHcCChHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHHcCC---HHHH
Q 039523           68 KALDVFTRAVQLDPE-NGEAWNIIACLH-MIKNKSKEAFIAFKEA-----LKLKRNGWQLWENYSHVALDVGN---IGQA  137 (244)
Q Consensus        68 ~A~~~~~~a~~~~p~-~~~~~~~l~~~~-~~~~~~~~A~~~~~~a-----~~~~p~~~~~~~~la~~~~~~~~---~~~A  137 (244)
                      .|.++++-.++++|. +|-+...+..++ .+..+|.--+..++..     +...|+.+ .-..+|.+|.....   -+.|
T Consensus       360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa  438 (665)
T KOG2422|consen  360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSA  438 (665)
T ss_pred             HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHH
Confidence            999999999999998 777666555554 5667788777777665     33345543 33456666666655   5778


Q ss_pred             HHHHHHHHhhcCC
Q 039523          138 LEAVQMVLNITNN  150 (244)
Q Consensus       138 ~~~~~~al~~~p~  150 (244)
                      ...+.+|+++.|.
T Consensus       439 ~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  439 LNALLQALKHHPL  451 (665)
T ss_pred             HHHHHHHHHhCcH
Confidence            8999999999885

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.041  Score=46.64  Aligned_cols=97  Identities=9%  Similarity=0.022  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS  125 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la  125 (244)
                      ++.+-|.-.++..+|..+++.|...+..-|.+      ......++.||....+.+.|++++++|-+.+|.++......-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34556777888899999999999998876654      335567888999999999999999999999999988888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhc
Q 039523          126 HVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       126 ~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      .+....|..++|+.+..+.....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhhh
Confidence            88888899999988887776554

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.70  E-value=0.098  Score=35.39  Aligned_cols=81  Identities=16%  Similarity=0.139  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHcCC---hHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523           85 EAWNIIACLHMIKNK---SKEAFIAFKEALK-LKRN-GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~---~~~A~~~~~~a~~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      ...+++++++.+..+   ..+.+.+++..++ -.|. ...+.+.++..+.+.++|+.++.+....++..|++......-.
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            344445555443333   2344455555553 2222 2344555555555555555555555555555555444333333


Q ss_pred             HHHHHh
Q 039523          160 RIVLNL  165 (244)
Q Consensus       160 ~~~~~~  165 (244)
                      .+...+
T Consensus       113 ~ied~i  118 (149)
T KOG3364|consen  113 TIEDKI  118 (149)
T ss_pred             HHHHHH
Confidence            333333

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.69  E-value=0.28  Score=41.44  Aligned_cols=124  Identities=15%  Similarity=0.084  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL-DPENGEAWNIIACLH   94 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~   94 (244)
                      ...|..........|+++...-.|++++--.......|..++......|+.+-|...+..+.++ .|..+.....-+.+.
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~  376 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE  376 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence            4556666777788999999999999999988889999999999999999999999988888875 577888888889999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039523           95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE  139 (244)
Q Consensus        95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~  139 (244)
                      ...|++..|...+++...--|+...+-...+......|+.+.+..
T Consensus       377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence            999999999999999998889988888888888889999988874

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.68  E-value=0.1  Score=35.31  Aligned_cols=77  Identities=19%  Similarity=0.227  Sum_probs=62.8

Q ss_pred             ChhHHHHHHHHHHHccC---HHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 039523           49 YPDGWFALGAAALKARD---VEKALDVFTRAVQ-LDPE-NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN  123 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~-~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  123 (244)
                      .....+++|.++.+..+   ..+.+.+++..++ ..|. ..+..+.++..+.+.++|+.++.+.+..++..|++..+...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            56678888998888765   5678889999996 4453 45678889999999999999999999999999999876544


Q ss_pred             HH
Q 039523          124 YS  125 (244)
Q Consensus       124 la  125 (244)
                      .-
T Consensus       111 k~  112 (149)
T KOG3364|consen  111 KE  112 (149)
T ss_pred             HH
Confidence            33

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.66  E-value=0.12  Score=35.73  Aligned_cols=84  Identities=10%  Similarity=-0.022  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      ..+......-...++.+++...+...--+.|+.+.+-..-|.+++..|+|.+|+..++......+..+...-.++.|+..
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            34555556666689999999999998889999999999999999999999999999999999888888888889999988


Q ss_pred             cCCh
Q 039523           97 KNKS  100 (244)
Q Consensus        97 ~~~~  100 (244)
                      +|+.
T Consensus        91 l~Dp   94 (153)
T TIGR02561        91 KGDA   94 (153)
T ss_pred             cCCh
Confidence            8875

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.035  Score=47.02  Aligned_cols=96  Identities=17%  Similarity=0.155  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      ++.+-|.-+++..+|..+++.|...+..-|.+      ......++.||....+.|.|.++++.+-+.+|.++-.-..+.
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34456777888999999999999999877654      456778999999999999999999999999999998888888


Q ss_pred             HHHHHcCChHHHHHHHHHHHhc
Q 039523           92 CLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                      .+....|..++|+.+..+....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhh
Confidence            8888999999999988776654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.64  E-value=0.081  Score=38.10  Aligned_cols=98  Identities=16%  Similarity=0.079  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHH----HH
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--NGWQ----LW  121 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~----~~  121 (244)
                      .++..+|..|.+.|+.++|+++|.++.......   .+.++.+..+....+++.....+..++-..-.  .++.    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            467788888888888888888888877654332   35667777888888888888888877765522  2222    23


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523          122 ENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       122 ~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      ..-|..+...++|..|...|-.+..-.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            345667777889999888887665433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.64  E-value=0.0036  Score=46.09  Aligned_cols=60  Identities=22%  Similarity=0.335  Sum_probs=55.3

Q ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           58 AAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        58 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      ......++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            445678899999999999999999999999999999999999999999999999999876

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.56  E-value=0.07  Score=38.43  Aligned_cols=99  Identities=17%  Similarity=0.045  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CcHH----H
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDP--ENGE----A   86 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~----~   86 (244)
                      ..++..+|..|.+.|+.+.|++.|.++.......   ...+..+..+.+..+++.....++.++-..-.  .+..    .
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4678899999999999999999999988765433   35678888899999999999999988876532  2232    2


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLK  114 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~  114 (244)
                      ....|..+...++|..|-..|-.+..-.
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            3445677788999999999987765544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.55  E-value=0.17  Score=41.36  Aligned_cols=126  Identities=14%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHH--HHHHHHh---------cCC--
Q 039523           16 QLELRSLARSAYNRGE-YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALD--VFTRAVQ---------LDP--   81 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~---------~~p--   81 (244)
                      +..+..-|.-++..|. -++|+..++.+++..+.+...-. .... +-...|..|+.  .+.+.++         +.|  
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n-~v~~-fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~  456 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN-IVFL-FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT  456 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH-HHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence            3445666788888888 88899999999999887764322 1111 11222333322  1222222         122  


Q ss_pred             -CcHHHHHHH--HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523           82 -ENGEAWNII--ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus        82 -~~~~~~~~l--~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                       .+.+.-..+  |..++.+|+|.++.-+..-..++.| ++.++..+|.|.....+|++|..++...
T Consensus       457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence             223333334  4457899999999999999999999 8999999999999999999999998653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.55  E-value=0.069  Score=35.25  Aligned_cols=62  Identities=13%  Similarity=0.072  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALK-------LKRNGWQ----LWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-------~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      ++..++.++..+|+|++++...++++.       ++.+...    +.+..+..+...|+.++|+..|+++-+.
T Consensus        57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            344555556666666655555544443       2333333    3455677778888888888888877654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.26  Score=40.75  Aligned_cols=131  Identities=18%  Similarity=0.127  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-Ch--hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--------
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSL-YP--DGWFALGAAALKARDVEKALDVFTRAVQLDPEN--------   83 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--------   83 (244)
                      .+..++.+|......+.++.|...|..+.+.-.. +.  .+..++|.+|.+.|+.+.-.+.++.   +.|.+        
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~  442 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQR  442 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHH
Confidence            4677888888888899999999999999887542 22  3445889999998887665555444   34432        


Q ss_pred             --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           84 --GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        84 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                        ..+++..|...+.++++.+|...+.+.++....      ..-.+..++.+....|+..++....+-++...
T Consensus       443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA  515 (629)
T KOG2300|consen  443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA  515 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence              346777888899999999999999999988521      13346677888899999999888777776654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.53  E-value=0.21  Score=40.03  Aligned_cols=119  Identities=17%  Similarity=0.147  Sum_probs=91.9

Q ss_pred             CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-C-C----
Q 039523           47 SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP----ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-R-N----  116 (244)
Q Consensus        47 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p-~----  116 (244)
                      ......|..++.+..+.|+++.|...+.++...++    ..+.+.+..+.++...|+..+|+..++..+... . .    
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            34566889999999999999999999999988653    257788889999999999999999998888711 0 0    


Q ss_pred             ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          117 ----------------------------GWQLWENYSHVALDV------GNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       117 ----------------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                                                  ...++..+|......      ++.+++...|.+++..+|+....+..++...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence                                        134556666666666      7888999999999999998666555555544


Q ss_pred             HHh
Q 039523          163 LNL  165 (244)
Q Consensus       163 ~~~  165 (244)
                      ..+
T Consensus       303 ~~~  305 (352)
T PF02259_consen  303 DKL  305 (352)
T ss_pred             HHH
Confidence            443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.36  Score=39.98  Aligned_cols=128  Identities=14%  Similarity=0.065  Sum_probs=94.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhC---CC-------ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-cH--HHH
Q 039523           21 SLARSAYNRGEYETSKILREAAMALN---SL-------YPDGWFALGAAALKARDVEKALDVFTRAVQLDPE-NG--EAW   87 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~--~~~   87 (244)
                      .+..+-.-.|++.+|+.....+....   |.       .+.+.+.+|......|.++.|...|..+++.... +.  -+.
T Consensus       328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n  407 (629)
T KOG2300|consen  328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN  407 (629)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44555566899999999888777653   32       3456778888888899999999999999886542 22  345


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           88 NIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        88 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      .++|.+|...|+-+.-.+.++..--.+...       ..+++..|...+.++++.+|...+.+.++..
T Consensus       408 lnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  408 LNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            678899999888766655554432221111       3467778888899999999999999999876

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.41  E-value=0.015  Score=48.13  Aligned_cols=90  Identities=18%  Similarity=0.060  Sum_probs=77.9

Q ss_pred             HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 039523           61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIK---NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA  137 (244)
Q Consensus        61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A  137 (244)
                      +..+.+..|+..|.++++..|.....+.+.+.++++.   |+.-.|+.-+..+++++|....+++.++.++..++++.+|
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea  464 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA  464 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence            3345678899999999999999999999998888764   4556777778889999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 039523          138 LEAVQMVLNITNN  150 (244)
Q Consensus       138 ~~~~~~al~~~p~  150 (244)
                      +++...+....|.
T Consensus       465 l~~~~alq~~~Pt  477 (758)
T KOG1310|consen  465 LSCHWALQMSFPT  477 (758)
T ss_pred             hhhHHHHhhcCch
Confidence            9998888777885

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.40  E-value=0.034  Score=50.73  Aligned_cols=138  Identities=15%  Similarity=0.176  Sum_probs=112.2

Q ss_pred             hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc---
Q 039523           11 FQMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKARDVEKALDVFTRAVQL---   79 (244)
Q Consensus        11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---   79 (244)
                      ++|+.+..+..++..+...|++++|+..-.++.-+.        |+....+.+++...+..++...|...+.++...   
T Consensus       968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen  968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence            488899999999999999999999999888775442        455667889999999999999999998888764   


Q ss_pred             -----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           80 -----DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--------NGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        80 -----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                           .|.-.....+++.++...++++.|+.+.+.|...+.        .....+..++......+++..|..+.+....
T Consensus      1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence                 344455667888888899999999999999988642        2356678888999999999998888777765


Q ss_pred             hc
Q 039523          147 IT  148 (244)
Q Consensus       147 ~~  148 (244)
                      +.
T Consensus      1128 iy 1129 (1236)
T KOG1839|consen 1128 IY 1129 (1236)
T ss_pred             HH
Confidence            53

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.18  E-value=0.43  Score=37.13  Aligned_cols=28  Identities=14%  Similarity=0.215  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 039523           18 ELRSLARSAYNRG-EYETSKILREAAMAL   45 (244)
Q Consensus        18 ~~~~la~~~~~~~-~~~~A~~~~~~al~~   45 (244)
                      .+++.|......+ +++.|..+++++.+.
T Consensus        37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen   37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            3344444444444 555555555555444

It is also involved in sporulation [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.17  E-value=0.43  Score=39.18  Aligned_cols=131  Identities=9%  Similarity=-0.031  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      ..+...|.++..++++.+|...|.+..+...+++.     ++.++....+-.++.+.-...+...-+..|..+....-.|
T Consensus         7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~   86 (549)
T PF07079_consen    7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA   86 (549)
T ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            45667799999999999999999999887665543     3444444455567777777777777777888888888899


Q ss_pred             HHHHHcCChHHHHHHHHHHHhc----CC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           92 CLHMIKNKSKEAFIAFKEALKL----KR-----------NGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~----~p-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      ...++.+++.+|++.+..-...    .|           ++...-...+.++...|++.+++..+.+.+..
T Consensus        87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            9999999999999887644332    11           11122234688899999999999998888754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.066  Score=40.79  Aligned_cols=73  Identities=18%  Similarity=-0.011  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS  125 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la  125 (244)
                      ..++=..+.+.++++.|..+.++.+..+|.++.-+...|.+|.+.|.+..|+..+...++.-|+.+.+-...+
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            3455566778888888888888888888888888888888888888888888888888888888776554433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.08  E-value=0.022  Score=29.76  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523          119 QLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      .++.++|.++...|++++|..++++++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            467788888888888888888888887764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.02  E-value=0.12  Score=38.51  Aligned_cols=65  Identities=17%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHH-------HHHHHHHhhCCC------ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523           16 QLELRSLARSAYNRGEYETSK-------ILREAAMALNSL------YPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~-------~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      +..+..+|.+|...|+.+...       ..|.+++.....      ...+.+.+|.+..+.|++++|.++|.+++...
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            455666677777777644333       333333332211      12455566666666666666666666666543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.98  E-value=0.026  Score=29.49  Aligned_cols=29  Identities=31%  Similarity=0.416  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMAL   45 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~   45 (244)
                      .++..+|.++...|++++|..++++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34555666666666666666666666543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.51  Score=42.76  Aligned_cols=60  Identities=13%  Similarity=0.061  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      +.+.+|..+|....+.|...+|++.|-++     +++..+.....+..+.|.|++-++++.-+-+
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            45677777777777777777777777654     4566666667777777777777776654443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.86  E-value=0.27  Score=39.77  Aligned_cols=104  Identities=17%  Similarity=0.020  Sum_probs=77.2

Q ss_pred             HHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc--------------C------------CCcH---HHHHHHH
Q 039523           41 AAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL--------------D------------PENG---EAWNIIA   91 (244)
Q Consensus        41 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------~------------p~~~---~~~~~l~   91 (244)
                      ..++.+|-+...+..++.++.+.|+...|.+.+++++-.              +            +.|.   -+.+...
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            445778999999999999999999999999999988532              1            1222   2455667


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRN-GWQLWENYSH-VALDVGNIGQALEAVQMV  144 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~-~~~~~~~~~~A~~~~~~a  144 (244)
                      ..+.+.|.+..|.++++-.+.++|. ++.......+ ...+.++++--++.++..
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~  165 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP  165 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence            7888999999999999999999998 6654444443 344556666555555543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.85  E-value=0.036  Score=45.55  Aligned_cols=113  Identities=11%  Similarity=-0.037  Sum_probs=91.8

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523            5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus         5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      ...++...|.+|......+.++...|+|+.+...+.-+-..-.....+...+-......|++++|.....-.+.-.-.++
T Consensus       312 ~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~  391 (831)
T PRK15180        312 LFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDE  391 (831)
T ss_pred             HHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCCh
Confidence            44567778999999999999999999999999887766655554555666667778889999999999888887777777


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      ++..-.+......|-++++.-.+++.+.++|..
T Consensus       392 ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        392 EVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             hheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            777666677778888999999999999998753

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.80  E-value=1  Score=38.22  Aligned_cols=152  Identities=11%  Similarity=-0.032  Sum_probs=115.5

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN-SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      +|++++.--......|...+.-....|+.+-|...+.++.+.. |..+.+...-+...-..|+++.|...+++.....|+
T Consensus       319 l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg  398 (577)
T KOG1258|consen  319 LFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPG  398 (577)
T ss_pred             HHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCc
Confidence            4555555445678899999999999999999999888888764 677778888888888999999999999999988899


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHH---HHHHHHhcCCCC---HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523           83 NGEAWNIIACLHMIKNKSKEAFI---AFKEALKLKRNG---WQLWENYSHV-ALDVGNIGQALEAVQMVLNITNNKRIDT  155 (244)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~~~A~~---~~~~a~~~~p~~---~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~  155 (244)
                      ...+-.....+..++|..+.+..   ++.....-..+.   ...+...++. +.-.++.+.|...+.+++...|+.....
T Consensus       399 ~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~  478 (577)
T KOG1258|consen  399 LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLY  478 (577)
T ss_pred             hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHH
Confidence            99988888899999999988884   333222221111   2334444443 4456789999999999999999854433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.78  E-value=0.23  Score=36.92  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=56.9

Q ss_pred             ccCHHHHHHHHHHHHhc----C-C--CcHHHHHHHHHHHHHcCChH-------HHHHHHHHHHhcCC------CCHHHHH
Q 039523           63 ARDVEKALDVFTRAVQL----D-P--ENGEAWNIIACLHMIKNKSK-------EAFIAFKEALKLKR------NGWQLWE  122 (244)
Q Consensus        63 ~g~~~~A~~~~~~a~~~----~-p--~~~~~~~~l~~~~~~~~~~~-------~A~~~~~~a~~~~p------~~~~~~~  122 (244)
                      ...+++|++.|.-|+-.    . +  .-+..+..+|.++...|+.+       .|...|.+++....      +...+.+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            34556666666554432    1 1  12456777888888888854       45555555554432      2256788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523          123 NYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       123 ~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      .+|.+..+.|++++|...|.+++...
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            89999999999999999999998754

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.76  E-value=0.32  Score=32.19  Aligned_cols=96  Identities=20%  Similarity=0.229  Sum_probs=68.1

Q ss_pred             HHHHHH--HHHHhcCCHHHHHHHHHHHHhhCCCC------------hhHHHHHHHHHHHccCHHHHHHHHHHHHh-----
Q 039523           18 ELRSLA--RSAYNRGEYETSKILREAAMALNSLY------------PDGWFALGAAALKARDVEKALDVFTRAVQ-----   78 (244)
Q Consensus        18 ~~~~la--~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----   78 (244)
                      +|..|+  .-.+..|-|++|...+++++.....-            .-++-.|+..+..+|+|++++..-.+++.     
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            444443  44456789999999999999864321            23556788889999999988877776665     


Q ss_pred             --cCCCcHHHH----HHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           79 --LDPENGEAW----NIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        79 --~~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                        ++.+....|    +..+..+...|+.++|+..|+.+-++
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence              344554444    56788899999999999999987654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.69  E-value=0.15  Score=38.95  Aligned_cols=68  Identities=12%  Similarity=0.047  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID  154 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  154 (244)
                      ..++=..+...++++.|..+.++.+.++|.++.-+.--|.+|.++|.+..|+..++..++..|+.+..
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            34455678889999999999999999999999999999999999999999999999999999997644

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.57  E-value=1  Score=37.20  Aligned_cols=142  Identities=13%  Similarity=0.136  Sum_probs=99.8

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523            5 MKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus         5 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      ++.-++.+|.+.-.|+.+-..+..+|.+++-.+.|++...-.|-.+.+|...-..-+..++|..-...|.+++...- +.
T Consensus        31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~l  109 (660)
T COG5107          31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NL  109 (660)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cH
Confidence            44556779999999999999999999999999999999999998888998777777777889888888888886543 24


Q ss_pred             HHHHHHHHHHHHcC-----C----hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHh
Q 039523           85 EAWNIIACLHMIKN-----K----SKEAFIAFKEALKLKRNGWQLWENYSHVALD---------VGNIGQALEAVQMVLN  146 (244)
Q Consensus        85 ~~~~~l~~~~~~~~-----~----~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~  146 (244)
                      +.|...-..-.+.+     +    .-+|.+..-..+-.+|.....|...+.....         +.+.+.-...|.+++.
T Consensus       110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~  189 (660)
T COG5107         110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ  189 (660)
T ss_pred             hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence            55544322222222     1    2244444334444578777888887776543         3344555667777775


Q ss_pred             h
Q 039523          147 I  147 (244)
Q Consensus       147 ~  147 (244)
                      .
T Consensus       190 t  190 (660)
T COG5107         190 T  190 (660)
T ss_pred             C
Confidence            3

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=1.1  Score=36.44  Aligned_cols=133  Identities=17%  Similarity=0.156  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CChHHHH
Q 039523           31 EYETSKILREAAMALNSLYPDGWFALGAAALKARD--VEKALDVFTRAVQLDPENGEAWNIIACLHMIK----NKSKEAF  104 (244)
Q Consensus        31 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----~~~~~A~  104 (244)
                      -.+.-+.+...++..+|+.-.+|.....++.+.+.  +..=++.++++++.+|.+-.+|...-.+....    ....+=+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            45566677777788888888888888777776654  46667778888888887777665543333222    2245566


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523          105 IAFKEALKLKRNGWQLWENYSHVALD------VGN------IGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       105 ~~~~~a~~~~p~~~~~~~~la~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      ++..+++.-++.+..+|.+-..+...      .|+      ...-.+.-..|+-.+|+++..+-....+.+
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~  240 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG  240 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence            67777777777777777777666552      231      223345555666667775555444444443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.52  E-value=0.08  Score=26.95  Aligned_cols=30  Identities=27%  Similarity=0.377  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHH--HHHHHhhCC
Q 039523           18 ELRSLARSAYNRGEYETSKIL--REAAMALNS   47 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~--~~~al~~~p   47 (244)
                      .++.+|-.+..+|++++|+..  |+-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344555555555555555555  334444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.41  E-value=0.18  Score=32.03  Aligned_cols=27  Identities=33%  Similarity=0.320  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                      ..++|.++...|++++|+..+++++++
T Consensus        44 ll~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   44 LLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            344455555555555555555555444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=1.7  Score=39.76  Aligned_cols=61  Identities=18%  Similarity=0.198  Sum_probs=52.7

Q ss_pred             CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                      +.+.+|..+|.+.++.|...+|++-|-++     ++|..+.....+..+.|.|++-+.++..+.+.
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            46789999999999999999999998664     57788888889999999999999988777654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.27  E-value=0.18  Score=38.98  Aligned_cols=80  Identities=14%  Similarity=0.252  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523           32 YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL  111 (244)
Q Consensus        32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  111 (244)
                      +..=+...++.++..  ...++..++..+...|+++.+.+.+++.+..+|.+-..|..+-..+...|+...|+..|++.-
T Consensus       137 f~~WV~~~R~~l~e~--~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALEEL--FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            555555555555432  456788889999999999999999999999999999999999999999999999999998876


Q ss_pred             hc
Q 039523          112 KL  113 (244)
Q Consensus       112 ~~  113 (244)
                      +.
T Consensus       215 ~~  216 (280)
T COG3629         215 KT  216 (280)
T ss_pred             HH
Confidence            64

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.22  E-value=0.16  Score=32.29  Aligned_cols=57  Identities=16%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCC---------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523           25 SAYNRGEYETSKILREAAMALNSLY---------PDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus        25 ~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      ...+.|++..|++.+.+.+......         ..++..+|.++...|++++|+..+++++++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3467899999999888887753221         35677899999999999999999999998754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.15  E-value=0.47  Score=41.15  Aligned_cols=132  Identities=15%  Similarity=-0.011  Sum_probs=81.3

Q ss_pred             HhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHH----------HHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            9 WKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGW----------FALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         9 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      ++.+| +++.|..+|......-.++-|...|-+.-....  ....          ...|.+-.--|+|++|.+.|-.+-+
T Consensus       686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G--ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr  762 (1189)
T KOG2041|consen  686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAG--IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR  762 (1189)
T ss_pred             HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccc--hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence            33355 589999999988888878877776665532211  0011          1223333334666666666543211


Q ss_pred             cC-------------------------CC---cHHHHHHHHHHHHHcCChHHHHHHHHHHH-------------------
Q 039523           79 LD-------------------------PE---NGEAWNIIACLHMIKNKSKEAFIAFKEAL-------------------  111 (244)
Q Consensus        79 ~~-------------------------p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------------------  111 (244)
                      .+                         .+   --.++.++|..+..+..|++|.++|...-                   
T Consensus       763 rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE  842 (1189)
T KOG2041|consen  763 RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELE  842 (1189)
T ss_pred             hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHH
Confidence            11                         11   13578888888888888888888776432                   


Q ss_pred             ---hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523          112 ---KLKRNGWQLWENYSHVALDVGNIGQALEAVQM  143 (244)
Q Consensus       112 ---~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  143 (244)
                         ..-|++...+-.+|..+...|.-++|.++|-+
T Consensus       843 ~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  843 VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence               22367777777888888888877777766543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.06  E-value=0.097  Score=26.62  Aligned_cols=21  Identities=10%  Similarity=0.156  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHH
Q 039523           52 GWFALGAAALKARDVEKALDV   72 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~   72 (244)
                      .++.+|..+...|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344555555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.05  E-value=1.1  Score=37.34  Aligned_cols=76  Identities=21%  Similarity=0.280  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN   98 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~   98 (244)
                      ...++..+..+|..+.|+...        .++...+.||   .+.|+.+.|.+...     ..+++..|-.+|.....+|
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence            344455555666655555431        2444455444   56677776666432     2346677888888888888


Q ss_pred             ChHHHHHHHHHH
Q 039523           99 KSKEAFIAFKEA  110 (244)
Q Consensus        99 ~~~~A~~~~~~a  110 (244)
                      +++-|.++|+++
T Consensus       362 ~~~lAe~c~~k~  373 (443)
T PF04053_consen  362 NIELAEECYQKA  373 (443)
T ss_dssp             BHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhh
Confidence            888888777754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.00  E-value=0.31  Score=39.54  Aligned_cols=88  Identities=22%  Similarity=0.112  Sum_probs=71.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCC--------CC----------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523           23 ARSAYNRGEYETSKILREAAMALNS--------LY----------PDGWFALGAAALKARDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p--------~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      |...+++++|..|..-|+.++++..        ..          ..+...+..||++.++.+-|+....+.+..+|...
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            5566778888888888888877532        11          12345789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEA  110 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a  110 (244)
                      .-+...|.|...+.+|.+|-..+--+
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987765444

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.91  E-value=0.19  Score=38.96  Aligned_cols=62  Identities=15%  Similarity=0.027  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           35 SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        35 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      |+.+|.+|+.+.|++...+..+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56788888888888888888888888888888888888888776654457777777777666

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.86  E-value=0.61  Score=37.97  Aligned_cols=56  Identities=9%  Similarity=-0.007  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ  142 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  142 (244)
                      --.+..||.++++.+.|+....+.+.++|.....+..-|.|+..+.+|.+|-.-+-
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam  286 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM  286 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999988865443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.76  E-value=1.5  Score=34.11  Aligned_cols=123  Identities=13%  Similarity=0.082  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhc----CC---Cc----
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQL----DP---EN----   83 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~----~p---~~----   83 (244)
                      +..++..+.......+.+.+...           ...+++.|......+ +++.|..+++++..+    .+   ..    
T Consensus        12 A~~~~~K~~~~~~~~~~~~~~~L-----------a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~   80 (278)
T PF08631_consen   12 AEHMYSKAKDLLNSLDPDMAEEL-----------ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS   80 (278)
T ss_pred             HHHHHHHhhhHHhcCCcHHHHHH-----------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence            34444444444444444444333           345677888888888 999999998888776    21   11    


Q ss_pred             ---HHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523           84 ---GEAWNIIACLHMIKNKSK---EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus        84 ---~~~~~~l~~~~~~~~~~~---~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  149 (244)
                         ..++..++.++...+.++   +|....+.+-.-.|+.+.++...-.++...++.+.+.+.+.+.+...+
T Consensus        81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence               235677888888887765   444455555555677777775555555557888888888888776543

It is also involved in sporulation [].

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.73  E-value=1.6  Score=35.52  Aligned_cols=128  Identities=11%  Similarity=0.013  Sum_probs=88.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhC---------CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCcHHH-H
Q 039523           23 ARSAYNRGEYETSKILREAAMALN---------SLYPDGWFALGAAALKARDVEKALDVFTRAVQL-----DPENGEA-W   87 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~-~   87 (244)
                      ...++.++++.+|..+-+..+..-         --.+..|+.+..++...|+...-...+...+..     +.....+ .
T Consensus       133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi  212 (493)
T KOG2581|consen  133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI  212 (493)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence            334456788888888766665421         112456788888888888877666666554432     3222233 3


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           88 NIIACLHMIKNKSKEAFIAFKEALKL--KR--NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        88 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +.+-..|...+.|+.|.....+..--  ..  ......+.+|.+..-+++|..|.+++-+|++..|+
T Consensus       213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            44556778888899998887765422  11  23556788899999999999999999999999997

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.68  E-value=0.055  Score=25.18  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=10.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHH
Q 039523           19 LRSLARSAYNRGEYETSKILR   39 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~   39 (244)
                      ...+|..+...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344445555555555544443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=1.1  Score=36.41  Aligned_cols=102  Identities=13%  Similarity=-0.012  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CC-ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--C--cHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALN-----SL-YPDGWFALGAAALKARDVEKALDVFTRAVQLDP--E--NGE   85 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~--~~~   85 (244)
                      +..|+.+...+...|+...-...+...+...     .. .....+.+-..|+..+.|+.|.....+..--+.  +  -+.
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            5677888888888888777776666655432     21 234566777888999999999998887652211  2  244


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      ..+.+|.+..-+++|..|.+++-+|+...|.+
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            66778999999999999999999999999974

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.59  E-value=1.1  Score=31.94  Aligned_cols=124  Identities=10%  Similarity=-0.064  Sum_probs=90.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHH
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLY--PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN----GEAWNIIACLHMI   96 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~   96 (244)
                      +.-....++.++|+..|...-+..-.+  .-+.+..|.+....|+...|+..|..+-+..|-.    .-+...-+.++..
T Consensus        65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD  144 (221)
T COG4649          65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD  144 (221)
T ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence            344455677777777777766554333  2356788899999999999999999887665421    2345666778889


Q ss_pred             cCChHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           97 KNKSKEAFIAFKEAL-KLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      .|.|++-..-.+..- ..+|--..+...||....+.|++.+|...|.....
T Consensus       145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            999988776654321 22444456778899999999999999999998876

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.59  E-value=0.27  Score=38.02  Aligned_cols=62  Identities=15%  Similarity=0.027  Sum_probs=53.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK   62 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   62 (244)
                      |..+|.+|+.+.|++...+..+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999997765578888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.54  E-value=0.074  Score=24.73  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHH
Q 039523           53 WFALGAAALKARDVEKALDVF   73 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~   73 (244)
                      ...+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            444555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.48  E-value=0.72  Score=38.46  Aligned_cols=105  Identities=21%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 039523           25 SAYNRGEYETSKILREAAMALNSLY-PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEA  103 (244)
Q Consensus        25 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A  103 (244)
                      .....++++++....+.. ++-|.- ......++..+.+.|-.+.|+...        .++...+.+   ..+.|+.+.|
T Consensus       270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A  337 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIA  337 (443)
T ss_dssp             HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHH
T ss_pred             HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHH
Confidence            344578888876666422 112222 334566777778888888877754        345566655   5688999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523          104 FIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus       104 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      .+..+     ..+++..|..+|.....+|+++-|..+|.++-.
T Consensus       338 ~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  338 LEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD  375 (443)
T ss_dssp             HHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred             HHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence            87654     345788999999999999999999999988743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.46  E-value=0.4  Score=37.08  Aligned_cols=80  Identities=11%  Similarity=0.025  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           66 VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        66 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      +..-+....+.++-  ....++..++..+...|+++.+...+++.+..+|.+-..|..+...|...|+...|+..|++.-
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            44444444444432  2456788899999999999999999999999999999999999999999999999999999887


Q ss_pred             hh
Q 039523          146 NI  147 (244)
Q Consensus       146 ~~  147 (244)
                      +.
T Consensus       215 ~~  216 (280)
T COG3629         215 KT  216 (280)
T ss_pred             HH
Confidence            63

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.46  E-value=0.42  Score=44.11  Aligned_cols=133  Identities=16%  Similarity=0.142  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHH------HHHH-HHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Q 039523           16 QLELRSLARSAYNRGEYETSKI------LREA-AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD--------   80 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------   80 (244)
                      ..-....|......|.+.+|.+      .+.. .-.+.|+....+..++.++.+.|++++|+..-.++.-+.        
T Consensus       932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen  932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence            3444566677777778887777      4442 223467788899999999999999999999888765442        


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      |+....+.+++...+..++...|...+.++..+        .|.......+++.++...++++.|+++.+.|+...
T Consensus      1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            455667888888888889999999988887765        45556667888999999999999999999999865

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.38  E-value=1.4  Score=40.21  Aligned_cols=146  Identities=16%  Similarity=0.061  Sum_probs=99.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHc----c---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           22 LARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKA----R---DVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        22 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      ...++...+.|+.|+..|++.-.-.|...   ++.+..|......    |   .+++|+.-|++.- ..|.-|--|...|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence            34677788899999999999998888654   4666677666543    2   4677777776643 3566677788899


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-----GNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      .+|.++|++++-++++.-|++..|+.+..-...-.+..++     .+-..|....--++.+.|.... ...-.++...+.
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  638 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS-SREEEKFLEILY  638 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-chHHHHHHHHHH
Confidence            9999999999999999999999988765433222222111     2334566777778888888432 223334444444


Q ss_pred             ccc
Q 039523          167 GRT  169 (244)
Q Consensus       167 ~~~  169 (244)
                      +..
T Consensus       639 ~~~  641 (932)
T PRK13184        639 HKQ  641 (932)
T ss_pred             hhc
Confidence            443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.24  E-value=1.3  Score=34.12  Aligned_cols=148  Identities=12%  Similarity=0.132  Sum_probs=92.9

Q ss_pred             CchHHHHHHhhccCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CC----------------------
Q 039523            1 MMPAMKKLWKFQMISQ----LELRSLARSAYNRGEYETSKILREAAMAL-------NS----------------------   47 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p----------------------   47 (244)
                      |+.-|++++++.|.-.    .++..+-.+.++.+++++-...|++.+..       +-                      
T Consensus        46 Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ  125 (440)
T KOG1464|consen   46 ALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQ  125 (440)
T ss_pred             HHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHH
Confidence            5778999999987654    35667778899999999998888877542       10                      


Q ss_pred             -------------CChhHH----HHHHHHHHHccCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHcC
Q 039523           48 -------------LYPDGW----FALGAAALKARDVEKALDVFTRAVQLDPE------------NGEAWNIIACLHMIKN   98 (244)
Q Consensus        48 -------------~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~~   98 (244)
                                   .+...|    ..+|.+++..|+|.+-.+.+.+.-+.+..            -..+|..-...|..++
T Consensus       126 ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qK  205 (440)
T KOG1464|consen  126 EFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQK  205 (440)
T ss_pred             HHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhc
Confidence                         011112    25667777777776665555544332211            1234444456677777


Q ss_pred             ChHHHHHHHHHHHhcCCC--CHHH---HHH-HHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           99 KSKEAFIAFKEALKLKRN--GWQL---WEN-YSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~~p~--~~~~---~~~-la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      +-..-...|++++.+...  ++.+   ... -|..+...|+|++|...|-+|++-.
T Consensus       206 nNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  206 NNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY  261 (440)
T ss_pred             ccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence            777777778888776432  2221   111 2455677889999988888887654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.24  E-value=1.1  Score=32.74  Aligned_cols=72  Identities=18%  Similarity=0.158  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 039523           66 VEKALDVFTRAVQLD-PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN----GWQLWENYSHVALDVGNIGQAL  138 (244)
Q Consensus        66 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~~~~~~~~A~  138 (244)
                      -+.|...|.++-... =+++...+.+|..|. ..+.++++..+-+++++.+.    ++.++..++.++..+|+++.|-
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            356666665543322 257888888888776 56788999999999988543    4889999999999999999874

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.21  E-value=3.6  Score=36.07  Aligned_cols=144  Identities=15%  Similarity=0.099  Sum_probs=96.5

Q ss_pred             CchHHHHHHhh---ccC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCC--h----hHHHHHHHHHHHccCHHHH
Q 039523            1 MMPAMKKLWKF---QMI-SQLELRSLARSAY-NRGEYETSKILREAAMALNSLY--P----DGWFALGAAALKARDVEKA   69 (244)
Q Consensus         1 Ai~~~~~al~~---~p~-~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~--~----~~~~~la~~~~~~g~~~~A   69 (244)
                      ||.+++-+++.   .|. .+.+.+.+|.+++ ...+++.|..++.+++.+...+  .    .+-+.++.++.+.+... |
T Consensus        40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a  118 (608)
T PF10345_consen   40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A  118 (608)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence            46677777642   221 3567889999887 7899999999999998877542  2    23446678888887777 9


Q ss_pred             HHHHHHHHhcCCC---cHHHH-HHH--HHHHHHcCChHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHHcCCHHHH
Q 039523           70 LDVFTRAVQLDPE---NGEAW-NII--ACLHMIKNKSKEAFIAFKEALKLK--RNGWQL----WENYSHVALDVGNIGQA  137 (244)
Q Consensus        70 ~~~~~~a~~~~p~---~~~~~-~~l--~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~----~~~la~~~~~~~~~~~A  137 (244)
                      ...+++.++...+   ....| +.+  .......+++..|...++.+....  +.++.+    ....+.+....+..+++
T Consensus       119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~  198 (608)
T PF10345_consen  119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV  198 (608)
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence            9999998886544   22222 222  222333479999999999888775  344333    22335556666777777


Q ss_pred             HHHHHHHH
Q 039523          138 LEAVQMVL  145 (244)
Q Consensus       138 ~~~~~~al  145 (244)
                      ++...++.
T Consensus       199 ~~~l~~~~  206 (608)
T PF10345_consen  199 LELLQRAI  206 (608)
T ss_pred             HHHHHHHH
Confidence            77777663

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=94.01  E-value=2.8  Score=34.30  Aligned_cols=130  Identities=15%  Similarity=0.089  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh--HHHHH--HHHHHHccCHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPD--GWFAL--GAAALKARDVEKALDVFTRAVQLDPE---NGEAWNII   90 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l   90 (244)
                      -....+..++..++|..|...+......-|....  .+..+  |..+...-++.+|.+.+++.....-.   ....+..+
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~  212 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL  212 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence            3456678889999999999999999986444433  33333  44455678899999999988765321   12222222


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQL--WENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      ..+.................. ..+....+  ++..|.--...|+|+.|...+-+++++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~  271 (379)
T PF09670_consen  213 VEVLKALESILSALEDKKQRQ-KKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL  271 (379)
T ss_pred             HHHHHHHHhhccchhhhhccc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            222222222111111111100 00011111  2222333346789999998888887753

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.92  E-value=0.85  Score=41.58  Aligned_cols=101  Identities=15%  Similarity=0.081  Sum_probs=77.0

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHc----C---ChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523           55 ALGAAALKARDVEKALDVFTRAVQLDPENG---EAWNIIACLHMIK----N---KSKEAFIAFKEALKLKRNGWQLWENY  124 (244)
Q Consensus        55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~a~~~~p~~~~~~~~l  124 (244)
                      ..-.+++..+.|+.|+..|++.-.-.|...   ++.+..|.....+    |   .+++|+..|++... .|.-+.-|...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH
Confidence            344567778899999999999999888654   5667777665432    2   46777777765433 45566778888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523          125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      |.+|..+|++++-+.++.-+++..|+++....
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISR  590 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence            99999999999999999999999999765433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.91  E-value=0.53  Score=28.64  Aligned_cols=21  Identities=14%  Similarity=0.336  Sum_probs=8.6

Q ss_pred             HccCHHHHHHHHHHHHhcCCC
Q 039523           62 KARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus        62 ~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      ...+.++|+..+.++++..++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~   38 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITD   38 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCC
Confidence            333344444444444444333

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.88  E-value=0.49  Score=34.55  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=58.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCh
Q 039523           26 AYNRGEYETSKILREAAMALN-SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE----NGEAWNIIACLHMIKNKS  100 (244)
Q Consensus        26 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~  100 (244)
                      ++..-.-+.|...|.++-... -+++...+.+|..|. ..+.++++..+.+++...+.    +++.+..++.++..+|++
T Consensus       116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            344434466666666554332 256788888887776 77899999999999987543    588999999999999999


Q ss_pred             HHHH
Q 039523          101 KEAF  104 (244)
Q Consensus       101 ~~A~  104 (244)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            9885

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.87  E-value=3.3  Score=34.39  Aligned_cols=135  Identities=8%  Similarity=0.034  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHH-HHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAA-ALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      -+|..+-+...+..-...|...|-++-+..-..+.++..-|.+ +...|++.-|...|+-.+...|+++......-..+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi  477 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI  477 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            3444444555556667888888888876553333333333333 456799999999999999999999888888888888


Q ss_pred             HcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           96 IKNKSKEAFIAFKEALKLKRNG--WQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      ..++-..|...|++++..-...  ...|..+......-|+...+...-++.....|+.
T Consensus       478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            9999999999999887664433  5567777777778899998888888888888874

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.73  E-value=0.91  Score=33.69  Aligned_cols=61  Identities=20%  Similarity=0.147  Sum_probs=46.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH
Q 039523           24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG   84 (244)
Q Consensus        24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~   84 (244)
                      ..+.+.++.++++...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|+..
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            3456677788888888888888888877777777778888888888888888777777653

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.73  E-value=3.2  Score=33.83  Aligned_cols=136  Identities=14%  Similarity=0.143  Sum_probs=95.8

Q ss_pred             hcCCH-HHHHHHHHHHHhhCCCChhHHHHHHHHHHH------------ccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           28 NRGEY-ETSKILREAAMALNSLYPDGWFALGAAALK------------ARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        28 ~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      ..|.+ +.++..-.+.+..+|+...+|...-.++..            ..-.++-+.+...+++.+|++..+|+....++
T Consensus        40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L  119 (421)
T KOG0529|consen   40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL  119 (421)
T ss_pred             hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            34444 446777777888899887777643333222            22456777888899999999999999999999


Q ss_pred             HHcCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523           95 MIKNK--SKEAFIAFKEALKLKRNGWQLWENYSHVALDVG----NIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus        95 ~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      .+.+.  +..-+..++++++.+|.+..+|..--.+.....    ...+-+++..+++..++.+..++..-..++.
T Consensus       120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            88776  477788999999999999888876655554433    2455677788888777765444444444443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.67  E-value=0.21  Score=24.10  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHH
Q 039523           67 EKALDVFTRAVQLDPENGEAWN   88 (244)
Q Consensus        67 ~~A~~~~~~a~~~~p~~~~~~~   88 (244)
                      +.+...|++++...|.++..|.
T Consensus         4 ~~~r~i~e~~l~~~~~~~~~W~   25 (33)
T smart00386        4 ERARKIYERALEKFPKSVELWL   25 (33)
T ss_pred             HHHHHHHHHHHHHCCCChHHHH
Confidence            3334444444444444444333

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.60  E-value=0.98  Score=39.66  Aligned_cols=60  Identities=10%  Similarity=-0.018  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH------HhhC----CCC-hhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAA------MALN----SLY-PDGWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~a------l~~~----p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      +.|-.-|.+|....++++|+++|++.      +++.    |.. ...-...|.-+...|+++.|+..|-.+
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea  732 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA  732 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence            34445567777788888888888754      3221    221 122234566677778888887776543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.42  E-value=1.1  Score=34.31  Aligned_cols=61  Identities=13%  Similarity=0.024  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEAL  111 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~  111 (244)
                      .+...+|.-|+..|++++|.++++.+.......      ..+...+..|....|+.+..+.+.-+.+
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            345678888888888888888888886543322      3456677788888888887777665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.33  E-value=0.2  Score=25.81  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523          121 WENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus       121 ~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      +..+|.+....++|+.|+.-|++++++
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.28  E-value=0.21  Score=25.71  Aligned_cols=29  Identities=10%  Similarity=0.413  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                      +++..+|.+....++|++|+.-|++++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            57889999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.28  E-value=3.4  Score=32.82  Aligned_cols=146  Identities=10%  Similarity=-0.041  Sum_probs=85.9

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----------------------CCh--hHHHHHH
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS-----------------------LYP--DGWFALG   57 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------------~~~--~~~~~la   57 (244)
                      +.-..|++++|+-+.++..++..-..  -..+|.+.++++++...                       .+.  .+-..++
T Consensus       205 ~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLA  282 (556)
T KOG3807|consen  205 KAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLA  282 (556)
T ss_pred             HHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHH
Confidence            34457788888888888877754332  24556666666655311                       011  2345788


Q ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHH------
Q 039523           58 AAALKARDVEKALDVFTRAVQLDPEN--GEAWNIIACLHMIKNKSKEAFIAFKEALKL-KRNGWQLWENYSHVA------  128 (244)
Q Consensus        58 ~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~------  128 (244)
                      .|..+.|+..+|++.++...+..|-.  ..++-++-..+....-|.+....+.+.-.+ .|.+....+.-+.+-      
T Consensus       283 MCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~  362 (556)
T KOG3807|consen  283 MCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSE  362 (556)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHh
Confidence            88999999999999998888877722  234445555555555555554444433332 244433333222221      


Q ss_pred             -------HHcCC---HHHHHHHHHHHHhhcCC
Q 039523          129 -------LDVGN---IGQALEAVQMVLNITNN  150 (244)
Q Consensus       129 -------~~~~~---~~~A~~~~~~al~~~p~  150 (244)
                             .+.|-   -..|++.+.++++.+|.
T Consensus       363 kFspd~asrRGLS~AE~~AvEAihRAvEFNPH  394 (556)
T KOG3807|consen  363 KFSPETASRRGLSTAEINAVEAIHRAVEFNPH  394 (556)
T ss_pred             hcCchhhhhccccHHHHHHHHHHHHHhhcCCC
Confidence                   11221   23578888999998887

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.15  E-value=0.33  Score=23.36  Aligned_cols=30  Identities=17%  Similarity=0.275  Sum_probs=25.1

Q ss_pred             CCHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 039523           30 GEYETSKILREAAMALNSLYPDGWFALGAA   59 (244)
Q Consensus        30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~   59 (244)
                      |+.+.+...|++++...|.++..|..++..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            567888999999999999889888877654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=93.02  E-value=0.22  Score=39.33  Aligned_cols=104  Identities=15%  Similarity=0.051  Sum_probs=57.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCC----------C---------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSL----------Y---------PDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~----------~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      ..+...+..++++.|..-|.+++..-..          +         .....+++.+-+..+.+..|......++..++
T Consensus       227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~  306 (372)
T KOG0546|consen  227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER  306 (372)
T ss_pred             ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence            4466688889999999888888764220          0         01223344444455555555555444444445


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY  124 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  124 (244)
                      ....+++..+..+....++++|.+.++.+....|++......+
T Consensus       307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~  349 (372)
T KOG0546|consen  307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL  349 (372)
T ss_pred             hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence            5555555555555555555555555555555555554443333

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.99  E-value=0.94  Score=33.61  Aligned_cols=63  Identities=13%  Similarity=0.156  Sum_probs=55.2

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523           56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW  118 (244)
Q Consensus        56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  118 (244)
                      ...-+++.+..++++...+.-++..|.+......+-.+++-.|+|++|...++-+-.+.|++.
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            345577888999999999999999999999999999999999999999999999999988763

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.91  E-value=0.74  Score=35.67  Aligned_cols=59  Identities=17%  Similarity=0.047  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      ....+..+...|.+.+|+.+.++++.++|-+...+..+..++...|+--.+..+|++.-
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34456778899999999999999999999999999999999999999888888887654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.88  E-value=6.9  Score=35.24  Aligned_cols=101  Identities=15%  Similarity=0.036  Sum_probs=76.7

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--c-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPE--N-------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG--  117 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--  117 (244)
                      +|......+.......++++|..+..++-..-|.  .       ...-...|.+....|+.++|.+..+.++..-|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            3444556677777888999999988887665443  1       2233445778888999999999999999887754  


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523          118 ---WQLWENYSHVALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus       118 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  149 (244)
                         ..+...+|.+..-.|++.+|..+...+.+...
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~  528 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR  528 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence               45677888999999999999999888877643

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.55  E-value=4.5  Score=32.22  Aligned_cols=121  Identities=13%  Similarity=0.092  Sum_probs=78.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------------
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP-------------   81 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-------------   81 (244)
                      ..+.-+.+-+..++..+...-+.....+++++|+.+.++..++.-  ..--..+|.+.++++++...             
T Consensus       183 ~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~  260 (556)
T KOG3807|consen  183 FLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQS  260 (556)
T ss_pred             ccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence            334445556666777888888899999999999998888777653  23345667777776665321             


Q ss_pred             ----------CcHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHH
Q 039523           82 ----------ENGEA--WNIIACLHMIKNKSKEAFIAFKEALKLKRNG--WQLWENYSHVALDVGNIGQA  137 (244)
Q Consensus        82 ----------~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~A  137 (244)
                                .+..+  ...++.|..++|+..+|++.++...+-.|-.  ..+..++...+....-|.+.
T Consensus       261 ~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv  330 (556)
T KOG3807|consen  261 PQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV  330 (556)
T ss_pred             cchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      11122  3457888889999999999998887766622  22344455555544444433

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.53  E-value=0.82  Score=24.42  Aligned_cols=25  Identities=16%  Similarity=0.363  Sum_probs=17.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523          122 ENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus       122 ~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      +.+|..|...|+.+.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566777777777777777777764

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.44  E-value=3.8  Score=35.27  Aligned_cols=47  Identities=19%  Similarity=0.200  Sum_probs=27.9

Q ss_pred             HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523           61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK  112 (244)
Q Consensus        61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  112 (244)
                      .+.|+++.|.+...++     ++..-|-.+|.+....+++..|.+++.++..
T Consensus       648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            4566666665544332     3455566666666666666666666666543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.38  E-value=0.87  Score=35.28  Aligned_cols=58  Identities=17%  Similarity=0.156  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA  110 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  110 (244)
                      +...+..|...|.+.+|.++.++++..+|-+...+..+-.++...|+--.+.+.|++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            4456777889999999999999999999999999999999999999988888888764

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.33  E-value=0.38  Score=39.29  Aligned_cols=61  Identities=20%  Similarity=0.226  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH-------h-hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAM-------A-LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al-------~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      +...+.+++.-.|+|..|++.++-.-       . ..+-+...++.+|.+|+.+++|.+|++.|...+-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788888999999998866431       1 1223456788999999999999999999987763

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.26  E-value=2.9  Score=41.52  Aligned_cols=133  Identities=14%  Similarity=0.001  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC----------
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-PE----------   82 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~----------   82 (244)
                      ...+.|...|++....|.++.|....-.|.+..  -+.+....|......|+-..|+..+++.+..+ |+          
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence            457899999999999999999999998888777  56778889999999999999999999998653 22          


Q ss_pred             c------HHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHH------------HcCCHHH---HHH
Q 039523           83 N------GEAWNIIACLHMIKNKS--KEAFIAFKEALKLKRNGWQLWENYSHVAL------------DVGNIGQ---ALE  139 (244)
Q Consensus        83 ~------~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~------------~~~~~~~---A~~  139 (244)
                      .      ..+...++......|++  .+-++.|..+.++.|.....++.+|..|.            +.|++..   ++.
T Consensus      1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~ 1825 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIY 1825 (2382)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHH
Confidence            1      12344445555555553  45677888999998876666666664432            2344444   455


Q ss_pred             HHHHHHhhc
Q 039523          140 AVQMVLNIT  148 (244)
Q Consensus       140 ~~~~al~~~  148 (244)
                      .|.+++...
T Consensus      1826 ~~~~sl~yg 1834 (2382)
T KOG0890|consen 1826 FFGRALYYG 1834 (2382)
T ss_pred             HHHHHHHhc
Confidence            555666554

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.91  E-value=1.8  Score=35.49  Aligned_cols=60  Identities=13%  Similarity=0.121  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523           53 WFALGAAALKARDVEKALDVFTRAV--------QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK  112 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~--------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  112 (244)
                      ...+..++.-.|+|..|++.++..-        +..+.....++..|-+|..+++|.+|++.|...+-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888999999999887531        12334567889999999999999999999987754

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=91.77  E-value=15  Score=37.08  Aligned_cols=101  Identities=15%  Similarity=0.070  Sum_probs=78.9

Q ss_pred             CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC----------
Q 039523           48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RN----------  116 (244)
Q Consensus        48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~----------  116 (244)
                      .....|...|.+.+..|+++.|...+-++.+..  -+.++...|..+...|+...|+..+++.+..+ |+          
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence            346799999999999999999999998888776  67888999999999999999999999999653 22          


Q ss_pred             C------HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhcCC
Q 039523          117 G------WQLWENYSHVALDVGNIG--QALEAVQMVLNITNN  150 (244)
Q Consensus       117 ~------~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~  150 (244)
                      .      ..+...++......|+++  .-+.+|..+..+.|.
T Consensus      1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence            1      123344445555556543  456789999999885

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.75  E-value=0.54  Score=25.12  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=16.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q 039523           20 RSLARSAYNRGEYETSKILREAAMA   44 (244)
Q Consensus        20 ~~la~~~~~~~~~~~A~~~~~~al~   44 (244)
                      +.+|..|..+|+.+.|...+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566666777777777776666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.43  E-value=4  Score=29.30  Aligned_cols=110  Identities=9%  Similarity=0.005  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCcHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVEKALDVFTRAV-QLDPENGEAWNII   90 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~l   90 (244)
                      -+.+..|.+..+.|+-..|+..|.++-...| .|.     +...-+.++...|.|+.-..-.+..- ..+|-...+.-.+
T Consensus        95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL  173 (221)
T COG4649          95 LARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL  173 (221)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence            3456778888899999999999999877665 332     44556777888999998776665433 2345556778889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      |...++.|++..|...|..... +...+....+.+.+.
T Consensus       174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m  210 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM  210 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence            9999999999999999988776 444455555555443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=91.38  E-value=11  Score=34.12  Aligned_cols=119  Identities=15%  Similarity=0.030  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C-------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSL--Y-------PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN--   83 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--   83 (244)
                      +|......+.......++++|.....++...-+.  .       ....-..|.+....|++++|.+..+.++..-|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            5667777888888999999999998888765443  1       2234456778889999999999999999877754  


Q ss_pred             ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCH--HHHHHHHHHHHHcCC
Q 039523           84 ---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKR----NGW--QLWENYSHVALDVGN  133 (244)
Q Consensus        84 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p----~~~--~~~~~la~~~~~~~~  133 (244)
                         ..+...+|.+..-.|++++|..+...+.+...    ...  .+....+.++..+|+
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq  552 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ  552 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence               34677889999999999999999988877732    222  233445777888883

>PF12854 PPR_1: PPR repeat

Probab=91.21  E-value=0.78  Score=22.81  Aligned_cols=27  Identities=22%  Similarity=0.210  Sum_probs=15.2

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTR   75 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~   75 (244)
                      +...|..+...+.+.|+.++|.+.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            444555555566666666666655543

>PF12854 PPR_1: PPR repeat

Probab=90.81  E-value=0.9  Score=22.57  Aligned_cols=27  Identities=22%  Similarity=0.205  Sum_probs=17.4

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523           83 NGEAWNIIACLHMIKNKSKEAFIAFKE  109 (244)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~  109 (244)
                      +...|..+...+.+.|+.++|.+.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            445566666667777777777766654

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.58  E-value=4.1  Score=31.15  Aligned_cols=61  Identities=13%  Similarity=-0.009  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      .....+|.-+...|++++|.++|+.+.......      ..++..+..|+...|+.+..+...-+.+
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            455678999999999999999999996654322      4567788899999999998877655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.16  E-value=11  Score=32.07  Aligned_cols=144  Identities=12%  Similarity=0.021  Sum_probs=80.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC   92 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~   92 (244)
                      |-+-..+..+-.++.+..++.-....+.+.+.... +..+++.++.+|... ..++-....++.++.+-++...-..++.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            33444444444555555555555556666665543 556666777777666 3345555666666666665555555555


Q ss_pred             HHHHcCChHHHHHHHHHHHhcC--------------------CCCHH-------------------H-HHHHHHHHHHcC
Q 039523           93 LHMIKNKSKEAFIAFKEALKLK--------------------RNGWQ-------------------L-WENYSHVALDVG  132 (244)
Q Consensus        93 ~~~~~~~~~~A~~~~~~a~~~~--------------------p~~~~-------------------~-~~~la~~~~~~~  132 (244)
                      .|.+ ++-..+..+|.+++...                    |++..                   + +..+-.-|....
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e  219 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE  219 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence            5544 55556666665554321                    12111                   1 111112344566


Q ss_pred             CHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523          133 NIGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus       133 ~~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      ++.+|++.+.-.++++..+.++...+-
T Consensus       220 N~~eai~Ilk~il~~d~k~~~ar~~~i  246 (711)
T COG1747         220 NWTEAIRILKHILEHDEKDVWARKEII  246 (711)
T ss_pred             CHHHHHHHHHHHhhhcchhhhHHHHHH
Confidence            888999999988888877655544443

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.11  E-value=11  Score=32.06  Aligned_cols=67  Identities=10%  Similarity=0.046  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhcCCchh
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKL---KRN----GWQLWENYSHVALDVGN-IGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~----~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~  153 (244)
                      ++.+|.++..+|+...|..+|..+++.   ..+    .|.+++.+|..+..+|. ..++..++.+|-+...+...
T Consensus       452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~l  526 (546)
T KOG3783|consen  452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYEL  526 (546)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccch
Confidence            345667777777777777777666532   111    25667777777777777 77777777777776655443

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=89.37  E-value=8.7  Score=29.89  Aligned_cols=113  Identities=11%  Similarity=0.044  Sum_probs=69.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCC--ChhHHHHHHHH---HHHccC----HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSL--YPDGWFALGAA---ALKARD----VEKALDVFTRAVQLDPENGEAWNIIACL   93 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~g~----~~~A~~~~~~a~~~~p~~~~~~~~l~~~   93 (244)
                      .+.+...++|++--..+.+......+  .....+..+..   ......    ...-...++..++..|++..++..+|..
T Consensus         7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~   86 (277)
T PF13226_consen    7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY   86 (277)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            35567788888888888777654322  11111111111   111111    1246777888889999999888888876


Q ss_pred             HHHc------CC----------------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 039523           94 HMIK------NK----------------SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG  135 (244)
Q Consensus        94 ~~~~------~~----------------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~  135 (244)
                      +...      +.                .+.|...+.+++.++|....+...+..+....|...
T Consensus        87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~  150 (277)
T PF13226_consen   87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD  150 (277)
T ss_pred             HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence            6421      11                256667777777778877777777777666666554

>PF13041 PPR_2: PPR repeat family

Probab=89.28  E-value=2.3  Score=23.09  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      .|..+-..+.+.|++++|.+.|++..+
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            344444455555555555555554443

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=89.16  E-value=6  Score=32.20  Aligned_cols=46  Identities=13%  Similarity=-0.109  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523           30 GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR   75 (244)
Q Consensus        30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   75 (244)
                      +..-+|+..++.++...|.+......+..+|...|-.+.|.+.|..
T Consensus       197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~  242 (365)
T PF09797_consen  197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            4466678888888888888888888888888888888888888864

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.04  E-value=5.1  Score=32.74  Aligned_cols=96  Identities=13%  Similarity=0.016  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CcH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDP--------ENG   84 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------~~~   84 (244)
                      -.++..+|..|...|+.+.|+++|-++-......   ...|.++..+-...|+|..-..+..++.+.-.        -.+
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            3577889999999999999999999976655432   45677888888888998887777777765410        012


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEAL  111 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~  111 (244)
                      ......|.+....++|..|..+|-.+.
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            344556667777779999988886553

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.89  E-value=6  Score=34.14  Aligned_cols=31  Identities=35%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             CChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523           48 LYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus        48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      ++..=|..||...+..|++..|.+++.++..
T Consensus       664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  664 NSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            3455567777777777777777777776643

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=88.69  E-value=3  Score=28.82  Aligned_cols=49  Identities=29%  Similarity=0.217  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK   99 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~   99 (244)
                      ......+...+..|++.-|.++.+.++..+|++..+....+.++..+|.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            3344445555566666666666666666666666666666666555543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.68  E-value=9.5  Score=33.69  Aligned_cols=27  Identities=11%  Similarity=0.103  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAA   42 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~a   42 (244)
                      ..++..+|..+..+.+|+.|.++|...
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467778888888888888888777654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=88.67  E-value=3.9  Score=24.97  Aligned_cols=59  Identities=12%  Similarity=-0.007  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHH---HHHHHHHHccCHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWF---ALGAAALKARDVEKALDVFTR   75 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~   75 (244)
                      .-....|.-++...+.++|+..++++++..++.+.-+.   .+..++...|+|.+.+.+-.+
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677778999999999999999999888776554   445567777888877776543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.56  E-value=4.5  Score=33.02  Aligned_cols=95  Identities=12%  Similarity=-0.001  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------CCHH
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPE---NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--------NGWQ  119 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~  119 (244)
                      .++..+|.-|...|+++.|+++|.++-...-.   ....+.++-.+....|+|..-..+..++.+...        -.+.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            36778999999999999999999996655433   345677788888888998777777666655410        0123


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523          120 LWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus       120 ~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      +....|.+...+++|+.|..+|-.+.
T Consensus       231 l~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  231 LKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            44455666666778888888876654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.42  E-value=17  Score=31.99  Aligned_cols=116  Identities=17%  Similarity=0.174  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHhhCCCC----hhHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCC--cH----HHHHHHHHHHHHcCCh
Q 039523           32 YETSKILREAAMALNSLY----PDGWFALGAAAL-KARDVEKALDVFTRAVQLDPE--NG----EAWNIIACLHMIKNKS  100 (244)
Q Consensus        32 ~~~A~~~~~~al~~~p~~----~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~--~~----~~~~~l~~~~~~~~~~  100 (244)
                      ...|+.+++-+++..+-.    ..+...+|.+++ ...+++.|..++++++.+...  ..    .+.+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            344677777777433222    347788999988 789999999999999887643  22    2345667888888887


Q ss_pred             HHHHHHHHHHHhcCCC----CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhc
Q 039523          101 KEAFIAFKEALKLKRN----GWQLWENYS--HVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       101 ~~A~~~~~~a~~~~p~----~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      . |...+++.++...+    .+...+.+-  ......+++..|.+.++......
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA  169 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            7 99999998887544    222222332  22223379999999999988775

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=88.32  E-value=1  Score=21.21  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Q 039523           53 WFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      |..+-..+.+.|++++|.+.+++..
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            3444455555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.92  E-value=17  Score=31.36  Aligned_cols=128  Identities=15%  Similarity=0.004  Sum_probs=86.1

Q ss_pred             cCCHHHHHHHHHHHHhh------------CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc---------C-------
Q 039523           29 RGEYETSKILREAAMAL------------NSLYPDGWFALGAAALKARDVEKALDVFTRAVQL---------D-------   80 (244)
Q Consensus        29 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---------~-------   80 (244)
                      ...|++|...|.-+...            .|-+...+..++.++...|+.+-|.....+++=.         .       
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            34577777777766553            3556678899999999999999888877776531         1       


Q ss_pred             -----CCcHHHH---HHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH-----H
Q 039523           81 -----PENGEAW---NIIACLHMIKNKSKEAFIAFKEALKLKRN-GWQLWENYSHVAL-DVGNIGQALEAVQMV-----L  145 (244)
Q Consensus        81 -----p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~-~~~~~~~A~~~~~~a-----l  145 (244)
                           |.|...|   +..-..+.+.|.+..|.++++-.++++|. ++.+...+..+|. ...+|+--+..++..     +
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l  410 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL  410 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence                 2222322   33334567889999999999999999998 7777666666554 445666666655544     3


Q ss_pred             hhcCCchhhHH
Q 039523          146 NITNNKRIDTE  156 (244)
Q Consensus       146 ~~~p~~~~~~~  156 (244)
                      ..-|+-++..+
T Consensus       411 ~~~PN~~yS~A  421 (665)
T KOG2422|consen  411 SQLPNFGYSLA  421 (665)
T ss_pred             hhcCCchHHHH
Confidence            44566444333

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=87.24  E-value=3.1  Score=28.07  Aligned_cols=44  Identities=9%  Similarity=0.046  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523           68 KALDVFTRAVQ--LDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL  111 (244)
Q Consensus        68 ~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  111 (244)
                      .+.+.|..+..  +.-..+..|...|..+...|++++|.+.|+.++
T Consensus        81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence            66666665544  455667777778888888888888888877664

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=86.55  E-value=2.2  Score=32.12  Aligned_cols=94  Identities=15%  Similarity=0.098  Sum_probs=56.7

Q ss_pred             HHHHccCHHHHHHHHHHHHhcCCCcH------------HHHHHHHHHHHHcCChH-HH-HHHHHHHHhc--CCCC--HHH
Q 039523           59 AALKARDVEKALDVFTRAVQLDPENG------------EAWNIIACLHMIKNKSK-EA-FIAFKEALKL--KRNG--WQL  120 (244)
Q Consensus        59 ~~~~~g~~~~A~~~~~~a~~~~p~~~------------~~~~~l~~~~~~~~~~~-~A-~~~~~~a~~~--~p~~--~~~  120 (244)
                      -.+..|+++.|++....++..+-.-|            +-....+......|+.- -+ ...+......  -|+.  ...
T Consensus        92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl  171 (230)
T PHA02537         92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL  171 (230)
T ss_pred             eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence            34678999999999999998752222            12233444455555521 11 1112222111  1222  344


Q ss_pred             HHHHHHHHH---------HcCCHHHHHHHHHHHHhhcCCch
Q 039523          121 WENYSHVAL---------DVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus       121 ~~~la~~~~---------~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      +...|..+.         ..++...|..++++|+.++|+.+
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G  212 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG  212 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence            556677663         45678899999999999999855

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.36  E-value=8.7  Score=29.79  Aligned_cols=86  Identities=12%  Similarity=0.040  Sum_probs=39.1

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCChhHHHHHHHHH------HHccCHHHHHHHHHHH
Q 039523            5 MKKLWKFQMISQLELRSLARSAYNR--GEYETSKILREAAMALNSLYPDGWFALGAAA------LKARDVEKALDVFTRA   76 (244)
Q Consensus         5 ~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~a   76 (244)
                      ...+++.+|.+-.+|...-.++...  .++..-....++.+..++.|-.+|...-.+.      ..-..+....++-..+
T Consensus        97 ~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~  176 (328)
T COG5536          97 LDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSL  176 (328)
T ss_pred             HHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHH
Confidence            3444455555555555444444332  4455555555555555555544443221111      2222233334444445


Q ss_pred             HhcCCCcHHHHHHH
Q 039523           77 VQLDPENGEAWNII   90 (244)
Q Consensus        77 ~~~~p~~~~~~~~l   90 (244)
                      +..++.+..+|...
T Consensus       177 I~tdi~N~SaW~~r  190 (328)
T COG5536         177 IETDIYNNSAWHHR  190 (328)
T ss_pred             HhhCCCChHHHHHH
Confidence            55555555555444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.30  E-value=7.8  Score=34.46  Aligned_cols=111  Identities=14%  Similarity=0.050  Sum_probs=63.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhh------------------------CCC-ChhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523           21 SLARSAYNRGEYETSKILREAAMAL------------------------NSL-YPDGWFALGAAALKARDVEKALDVFTR   75 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~------------------------~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~   75 (244)
                      ..|..+...|+++.|+..|-++-..                        +.+ ....+-.++.-|...|+|+-|.++|.+
T Consensus       711 ~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e  790 (1636)
T KOG3616|consen  711 AWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE  790 (1636)
T ss_pred             HHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence            4466777788888887766544211                        000 112344566777778888888887765


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 039523           76 AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-WQLWENYSHVALDVGNIGQALEAV  141 (244)
Q Consensus        76 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~  141 (244)
                      +-.        .......|.+.|+|++|.+.-.+...  |.. ...+...+.-.-..|+|.+|.+.|
T Consensus       791 ~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  791 ADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             cch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            422        22334556777888888777665533  222 233444454455555555554433

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.98  E-value=4  Score=28.18  Aligned_cols=52  Identities=6%  Similarity=-0.122  Sum_probs=40.5

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523           83 NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI  134 (244)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~  134 (244)
                      ..+.....+.-....|++..|..+...++..+|++..+....+.++..+|.-
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            3455667777888999999999999999999999999998889888877643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=85.77  E-value=5.9  Score=34.53  Aligned_cols=47  Identities=17%  Similarity=0.256  Sum_probs=20.4

Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523           94 HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQM  143 (244)
Q Consensus        94 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  143 (244)
                      +...++|.+|....++.-+.-|   .+++..|..+....++++|...|.+
T Consensus       783 Hve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhk  829 (1081)
T KOG1538|consen  783 HVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHK  829 (1081)
T ss_pred             eeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHH
Confidence            4445555555554444333222   2334444444444444444444443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=85.70  E-value=2.5  Score=20.32  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |..+...+.+.|++++|.+.|.+..+
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34455555666666666666655443

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=85.69  E-value=3.9  Score=33.27  Aligned_cols=42  Identities=12%  Similarity=-0.136  Sum_probs=38.0

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAA   42 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   42 (244)
                      |+.+++.++..+|.+......+.++|...|-...|...|...
T Consensus       202 Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  202 AIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            466788899999999999999999999999999999998765

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=85.60  E-value=9.1  Score=26.20  Aligned_cols=54  Identities=19%  Similarity=0.079  Sum_probs=30.2

Q ss_pred             HHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           60 ALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        60 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                      ....|+-+.-.+.+....+-+..+|..+..+|.+|.+.|+..++-+.+.+|-+.
T Consensus        96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            344555555555566655555556777777777777777777777777766554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13041 PPR_2: PPR repeat family

Probab=85.59  E-value=4.1  Score=22.04  Aligned_cols=44  Identities=11%  Similarity=0.043  Sum_probs=32.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALN-SLYPDGWFALGA   58 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~   58 (244)
                      +...|..+-..+.+.|++++|.+.|++..+.. +-+...+..+..
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~   46 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN   46 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            45678888899999999999999999999864 224444444433

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=85.50  E-value=3.8  Score=29.88  Aligned_cols=45  Identities=16%  Similarity=0.144  Sum_probs=27.3

Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523           70 LDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR  115 (244)
Q Consensus        70 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  115 (244)
                      .+..++.++..| ++.++.+++.++...|+.++|.....++....|
T Consensus       131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            344445555555 555566666666666666666666666666666

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.46  E-value=11  Score=29.25  Aligned_cols=121  Identities=7%  Similarity=0.067  Sum_probs=79.2

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCh----hHHHHHHHHHHHccCHHHHHHHHHHHHhc-------CC----------------
Q 039523           29 RGEYETSKILREAAMALNSLYP----DGWFALGAAALKARDVEKALDVFTRAVQL-------DP----------------   81 (244)
Q Consensus        29 ~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~p----------------   81 (244)
                      ..+.++|+..|.+.+++.++-.    .++..+..+.++.|++++-.+.|.+.+..       +-                
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            4589999999999999988654    36778888999999999998888866532       10                


Q ss_pred             -------------------CcHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCC------------CHHHHHHHHH
Q 039523           82 -------------------ENGEAW----NIIACLHMIKNKSKEAFIAFKEALKLKRN------------GWQLWENYSH  126 (244)
Q Consensus        82 -------------------~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~  126 (244)
                                         .+...|    ..+|.+++..|.|..-.+.+++......+            -..++..-..
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence                               001112    23566666666666655555544332110            1234444456


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcC
Q 039523          127 VALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus       127 ~~~~~~~~~~A~~~~~~al~~~p  149 (244)
                      .|..+.+-..-...|++++.+..
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKS  222 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKS  222 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhc
Confidence            77777777777788888887643

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.16  E-value=15  Score=28.29  Aligned_cols=92  Identities=15%  Similarity=0.015  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCChhHHHHHHHHHHHccCHH-HHHHHHHHHHhcC------CCc
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMAL-----NSLYPDGWFALGAAALKARDVE-KALDVFTRAVQLD------PEN   83 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~------p~~   83 (244)
                      .+.++.=+..+.+.|++..|.+...-.++.     .+.+......++.+....+.-+ +-.+..+++++..      -.+
T Consensus        10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd   89 (260)
T PF04190_consen   10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD   89 (260)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred             HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence            345666677888888888777665554443     2334444456666666655333 4455556666543      145


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHH
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAF  107 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~  107 (244)
                      +..+..+|..+.+.|++.+|..+|
T Consensus        90 p~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   90 PELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHH
Confidence            778888888888888888887665

; PDB: 3LKU_E 2WPV_G.

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.35  E-value=17  Score=28.23  Aligned_cols=133  Identities=10%  Similarity=0.055  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------HHcCChHHH
Q 039523           32 YETSKILREAAMALNSLYPDGWFALGAAALKA--RDVEKALDVFTRAVQLDPENGEAWNIIACLH------MIKNKSKEA  103 (244)
Q Consensus        32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~------~~~~~~~~A  103 (244)
                      .+.-+.++..+++.+|.+-.+|...-.++..-  .++..-....++.+..++.|-.+|...-.++      .....+..-
T Consensus        90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e  169 (328)
T COG5536          90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE  169 (328)
T ss_pred             hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence            55667889999999999999998877776655  6677777888899999999988776544333      233334444


Q ss_pred             HHHHHHHHhcCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523          104 FIAFKEALKLKRNGWQLWENY---SHVALDVGN------IGQALEAVQMVLNITNNKRIDTELLERIVLN  164 (244)
Q Consensus       104 ~~~~~~a~~~~p~~~~~~~~l---a~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  164 (244)
                      .++-..++..++.+..+|...   .......|+      +++-+++...++-.+|++...+..+....+.
T Consensus       170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~  239 (328)
T COG5536         170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE  239 (328)
T ss_pred             HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence            566667788899998888776   333334554      3444556666666778866555555544443

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=83.92  E-value=1.1  Score=35.66  Aligned_cols=79  Identities=14%  Similarity=0.112  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      ....++.+-+..+.+..|+.....++..++....+++..+..+....++++|.+.+..+....|++....-.+..+-..
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            4455778888889999999888888888888899999999999999999999999999999999988766555444433

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=83.89  E-value=9.2  Score=27.86  Aligned_cols=50  Identities=8%  Similarity=0.056  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523          101 KEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus       101 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      +..++..++.++..| ++.++..++.++...|+.++|.+...++..+.|.+
T Consensus       128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            344555667777777 57889999999999999999999999999999953

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=82.01  E-value=32  Score=29.46  Aligned_cols=136  Identities=15%  Similarity=0.001  Sum_probs=90.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC------------
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD------------   80 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------------   80 (244)
                      .++-.+++.++.+|... ..++-...+++..+.+-++...-..++..|.+ ++-+++..+|.+++-..            
T Consensus        96 ~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~ev  173 (711)
T COG1747          96 GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEV  173 (711)
T ss_pred             cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHH
Confidence            45667888889998888 55667778888888887777777777777766 77777777777765431            


Q ss_pred             --------CCcHHHHHH--------------------HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--
Q 039523           81 --------PENGEAWNI--------------------IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD--  130 (244)
Q Consensus        81 --------p~~~~~~~~--------------------l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~--  130 (244)
                              |++.+..+.                    .-.-|....++.+|+..+...++.+..+..+..++...+..  
T Consensus       174 WeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y  253 (711)
T COG1747         174 WEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKY  253 (711)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHh
Confidence                    222221111                    11223456778899999998888888877776666555544  


Q ss_pred             ------------------cCCHHHHHHHHHHHHhhcCC
Q 039523          131 ------------------VGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       131 ------------------~~~~~~A~~~~~~al~~~p~  150 (244)
                                        -.++..+..-|++.+..+.+
T Consensus       254 ~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG  291 (711)
T COG1747         254 RGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG  291 (711)
T ss_pred             ccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence                              33455566666666655444

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=81.59  E-value=41  Score=30.46  Aligned_cols=117  Identities=18%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCChHHHHHH
Q 039523           30 GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM---IKNKSKEAFIA  106 (244)
Q Consensus        30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~---~~~~~~~A~~~  106 (244)
                      +.-+.-+..++.-+.+++.+......|..++...|++++-...-.++..+.|..+..|.....-..   ..+...++...
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~  172 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL  172 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence            444555666777777777777777888888888888888877777778888888888776654332   23556677777


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHhh
Q 039523          107 FKEALKLKRNGWQLWENYSHVA-------LDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus       107 ~~~a~~~~p~~~~~~~~la~~~-------~~~~~~~~A~~~~~~al~~  147 (244)
                      |++++.-. +++..|...+...       ...++++.....|.++++-
T Consensus       173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s  219 (881)
T KOG0128|consen  173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS  219 (881)
T ss_pred             HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence            77777643 3444454444433       3446677778888888764

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=81.16  E-value=19  Score=26.27  Aligned_cols=112  Identities=17%  Similarity=0.126  Sum_probs=76.4

Q ss_pred             cCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-----ccCHHHHHHHHHHHHhcCCCcHHH
Q 039523           13 MISQLELRSLARSAY-NRGEYETSKILREAAMALNSLYPDGWFALGAAALK-----ARDVEKALDVFTRAVQLDPENGEA   86 (244)
Q Consensus        13 p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~p~~~~~   86 (244)
                      ...|+.-..||..+. -+.+|++|...|+.--..+. .+...+.+|..++.     .++...|++.+..+..  .+++.+
T Consensus        31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a  107 (248)
T KOG4014|consen   31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA  107 (248)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence            345677777776554 36788888888887665554 45556666655442     4578899999987765  567888


Q ss_pred             HHHHHHHHHH-----cCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039523           87 WNIIACLHMI-----KNK--SKEAFIAFKEALKLKRNGWQLWENYSHVAL  129 (244)
Q Consensus        87 ~~~l~~~~~~-----~~~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  129 (244)
                      ...+|.++..     .++  ..+|.+++.++-.+.  +..+.++|...+.
T Consensus       108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~  155 (248)
T KOG4014|consen  108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYM  155 (248)
T ss_pred             HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHh
Confidence            8888887753     233  578888888876654  5556666665554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.94  E-value=30  Score=31.34  Aligned_cols=30  Identities=10%  Similarity=0.214  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMAL   45 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~   45 (244)
                      ..++...|..++..|++++|...|-+.+..
T Consensus       368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            456778889999999999999999888764

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=80.91  E-value=15  Score=25.15  Aligned_cols=120  Identities=10%  Similarity=0.111  Sum_probs=68.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChhHH-----------HHHHHHHHH---------ccCHHHHHHHHHHHHhcCCC
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLYPDGW-----------FALGAAALK---------ARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~la~~~~~---------~g~~~~A~~~~~~a~~~~p~   82 (244)
                      |.-....|..++..+...+.....+-...-|           -.+-..+-.         -|+...-+.++-..-   ..
T Consensus         9 AK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n---~~   85 (161)
T PF09205_consen    9 AKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN---KL   85 (161)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-----
T ss_pred             HHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc---ch
Confidence            3445566777777777777766554221111           112222222         345556666654321   11


Q ss_pred             cHHHHHHHH-HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           83 NGEAWNIIA-CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        83 ~~~~~~~l~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      +  -+..+| .++..+|+-++-.+.+....+.+..++..+..+|.+|.+.|+..++-+.+.+|-+.
T Consensus        86 s--e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   86 S--EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             ---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             H--HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            1  233343 45667788777777887777666667999999999999999999999999988754

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=80.39  E-value=5  Score=34.92  Aligned_cols=52  Identities=15%  Similarity=0.174  Sum_probs=36.8

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523           56 LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA  110 (244)
Q Consensus        56 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  110 (244)
                      +...+...++|++|....++.-+.-   +++++..|..+....++++|.+.|.+|
T Consensus       779 iVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  779 LVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            4455667788888888776654433   456777788888888888887777655

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=80.38  E-value=5.4  Score=19.61  Aligned_cols=26  Identities=12%  Similarity=0.391  Sum_probs=14.6

Q ss_pred             CHHHHHHHHHHHHhhCCCChhHHHHHH
Q 039523           31 EYETSKILREAAMALNSLYPDGWFALG   57 (244)
Q Consensus        31 ~~~~A~~~~~~al~~~p~~~~~~~~la   57 (244)
                      +++.|...|++.+...| ++..|...|
T Consensus         2 E~dRAR~IyeR~v~~hp-~~k~WikyA   27 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHP-EVKNWIKYA   27 (32)
T ss_pred             hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence            35566666666666655 345555444

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-08
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-07
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		1e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-06
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-04
2c0l_A	305	Tpr Domain Of Human Pex5p In Complex With Human Msc		2e-04
3r9a_B	328	Human Alanine-Glyoxylate Aminotransferase In Comple		2e-04
2c0m_A	319	Apo Form Of The Tpr Domain Of The Pex5p Receptor Le		2e-04
2j9q_A	328	A Novel Conformation For The Tpr Domain Of Pex5p Le		3e-04
1fch_A	368	Crystal Structure Of The Pts1 Complexed To The Tpr		3e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 65/128 (50%)
Query: 21  SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
           +L  + Y +G+Y+ +    + A+ L+    + W+ LG A  K  D ++A++ + +A++LD
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 81  PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
           P + EAW  +   +  +    EA   +++AL+L     + W N  +     G+  +A+E 
Sbjct: 66  PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 141 VQMVLNIT 148
            Q  L + 
Sbjct: 126 YQKALELD 133

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
           W+ LG A  K  D ++A++ + +A++LDP N EAW  +   +  +    EA   +++AL+
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
           L  N  + W N  +     G+  +A+E  Q  L +  N
Sbjct: 72  LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%)
Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
           W+ LG A  K  D ++A++ + +A++L P N EAW  +   +  +    EA   +++AL+
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
           L  N  + W N  +     G+  +A+E  Q  L +  N
Sbjct: 72  LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 53/97 (54%)
Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           ++L  + Y +G+Y+ +    + A+ L+      W+ LG A  K  D +KA++ + +A++L
Sbjct: 13  KNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALEL 72
Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
           DP N +AW      +  +   ++A   +++AL+L  N
Sbjct: 73  DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
           W  LG A  K  D +KA++ + +A++LDP N  AW  +   +  +   ++A   +++AL+
Sbjct: 12  WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
           L  N  + W    +     G+  +A+E  Q  L +  N
Sbjct: 72  LDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 57/107 (53%)
Query: 21  SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
           +LA     +G+ + + +  + A+ ++  + D +  +G    + +DV+ AL  +TRA+Q++
Sbjct: 48  NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
Query: 81  PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127
           P   +A + +A +H       EA  +++ ALKLK +    + N +H 
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
           W+ LG A  K  D ++A++ + +A++LDP N EAW  +   +  +    EA   +++AL+
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 113 LKRN 116
           L  N
Sbjct: 72  LDPN 75

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 51  DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA 110
           + W+ LG A  K  D ++A++ + +A++LDP + EAW  +   +  +    EA   +++A
Sbjct: 4   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 111 LKL 113
           L+L
Sbjct: 64  LEL 66

>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46  NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
            S+ PD    LG     + + +KA+D FT A+ + P +   WN +       N+S+EA  
Sbjct: 150 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 209
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
           A++ AL+L+  G+ +   Y ++ +   N+G   EAV+  L   N +R
Sbjct: 210 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 253

>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46  NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
            S+ PD    LG     + + +KA+D FT A+ + P +   WN +       N+S+EA  
Sbjct: 173 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 232
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
           A++ AL+L+  G+ +   Y ++ +   N+G   EAV+  L   N +R
Sbjct: 233 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 276

>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46  NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
            S+ PD    LG     + + +KA+D FT A+ + P +   WN +       N+S+EA  
Sbjct: 164 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 223
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
           A++ AL+L+  G+ +   Y ++ +   N+G   EAV+  L   N +R
Sbjct: 224 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 267

>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46  NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
            S+ PD    LG     + + +KA+D FT A+ + P +   WN +       N+S+EA  
Sbjct: 173 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 232
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
           A++ AL+L+  G+ +   Y ++ +   N+G   EAV+  L   N +R
Sbjct: 233 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 276

>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 46  NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
            S+ PD    LG     + + +KA+D FT A+ + P +   WN +       N+S+EA  
Sbjct: 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272
Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR 152
           A++ AL+L+  G+ +   Y ++ +   N+G   EAV+  L   N +R
Sbjct: 273 AYRRALELQ-PGY-IRSRY-NLGISCINLGAHREAVEHFLEALNMQR 316

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-16
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-04
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-04
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	5e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-04
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-04
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-04
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-04

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 20/118 (16%), Positives = 34/118 (28%)

Query: 30  GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI 89
            +     +   AA+         W  L  A L   D         R + L P + EA   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 90  IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
           +  +   + +  EA +  ++A         +     H   D G    A  A      +
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 17/133 (12%), Positives = 41/133 (30%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
              LA +    G+    ++  +  +AL+  +P+    LG      +   +A  +  +A  
Sbjct: 26  WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
             PE+      +        +++ A  A+  A +L      +     +    + +     
Sbjct: 86  AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD 145

Query: 139 EAVQMVLNITNNK 151
                V       
Sbjct: 146 VLSAQVRAAVAQG 158

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 14/85 (16%), Positives = 28/85 (32%)

Query: 63  ARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWE 122
             D  + L     AV+  P++  AW ++A   +    +    +A +  L L     +   
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 123 NYSHVALDVGNIGQALEAVQMVLNI 147
               V        +A   +Q   + 
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDA 86

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 71.7 bits (176), Expect = 5e-16
 Identities = 18/125 (14%), Positives = 40/125 (32%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
              L+    +  +ALG    +A   + A  +F     LD  +   +  +          +
Sbjct: 10  LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69

Query: 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI 161
           +A  ++     +  N  +   + +   L +G++  A         +   +     L  R 
Sbjct: 70  QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129

Query: 162 VLNLE 166
              LE
Sbjct: 130 GAMLE 134

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.4 bits (170), Expect = 3e-15
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 7/124 (5%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           L +L  + Y  G+++ ++ + +A   L+      +  LGA        E+AL  ++    
Sbjct: 21  LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           +D          A  H+       A   F  A  L                     G  L
Sbjct: 81  MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA-------AAQPAHEALAARAGAML 133

Query: 139 EAVQ 142
           EAV 
Sbjct: 134 EAVT 137

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 10/75 (13%), Positives = 20/75 (26%)

Query: 73  FTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132
                 L  +  E    +        K  +A   F+    L     + +         +G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 133 NIGQALEAVQMVLNI 147
              QAL++      +
Sbjct: 67  LYEQALQSYSYGALM 81

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 75.3 bits (186), Expect = 6e-16
 Identities = 23/126 (18%), Positives = 55/126 (43%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA   Y  G++E ++                   L +   + R ++++    T A++ +P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
              EA++ +  ++  + + +EA   ++ AL+LK +    + N +   +  G++  A++A 
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124

Query: 142 QMVLNI 147
              L  
Sbjct: 125 VSALQY 130

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.5 bits (171), Expect = 5e-14
 Identities = 18/126 (14%), Positives = 51/126 (40%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           L+   +     + S      A+  N L  + +  LG    +   +++A++ +  A++L P
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
           +  + +  +A   +     + A  A+  AL+   + + +  +  ++   +G + +A    
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158

Query: 142 QMVLNI 147
              +  
Sbjct: 159 LKAIET 164

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 28/127 (22%), Positives = 55/127 (43%)

Query: 21  SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
           +L      RG+ + +      A+ L   + DG+  L AA + A D+E A+  +  A+Q +
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

Query: 81  PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
           P+     + +  L     + +EA   + +A++ + N    W N   V    G I  A+  
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191

Query: 141 VQMVLNI 147
            +  + +
Sbjct: 192 FEKAVTL 198

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
            N G   + ++I   A      A++L+  +      L     +   ++ A+D + RA++L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
            P   +A+  +A     K    EA   +  AL+L         N +++  + GNI +A+ 
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 140 AVQMVLNI 147
             +  L +
Sbjct: 327 LYRKALEV 334

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 8e-12
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
            N    Y    ++  A      A+ L   +PD +  L  A  +   V +A D +  A++L
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
            P + ++ N +A +   +   +EA   +++AL++         N + V    G + +AL 
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360

Query: 140 AVQMVLNI 147
             +  + I
Sbjct: 361 HYKEAIRI 368

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 25/126 (19%), Positives = 57/126 (45%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           L      +GE   +    E A+ L+  + D +  LG    +AR  ++A+  + RA+ L P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
            +      +AC++  +     A   ++ A++L+ +    + N ++   + G++ +A +  
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294

Query: 142 QMVLNI 147
              L +
Sbjct: 295 NTALRL 300

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 17/96 (17%), Positives = 38/96 (39%)

Query: 52  GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111
           G   L     +A D E A     +  + +P+N     +++ +H    +   +      A+
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 112 KLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
           K      + + N  +V  + G + +A+E  +  L +
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 21/114 (18%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
            N     +    + EA      A+ L   + D    L     +  ++E+A+ ++ +A+++
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN 133
            PE   A + +A +   + K +EA + +KEA+++       + N  +   ++ +
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.6 bits (148), Expect = 5e-11
 Identities = 25/126 (19%), Positives = 51/126 (40%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA +    G+ E +     +A+  N         LG        +E+A   + +A++  P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
               AW+ + C+   + +   A   F++A+ L  N    + N  +V  +     +A+ A 
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 142 QMVLNI 147
              L++
Sbjct: 227 LRALSL 232

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 26/114 (22%), Positives = 43/114 (37%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
              G  E +K     A+     +   W  LG       ++  A+  F +AV LDP   +A
Sbjct: 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
           +  +  +         A  A+  AL L  N   +  N + V  + G I  A++ 
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 71.1 bits (174), Expect = 9e-16
 Identities = 19/137 (13%), Positives = 43/137 (31%)

Query: 30  GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI 89
           G   +          ++S   +  ++L     ++   E A  VF     LD  +   +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 90  IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN 149
           +        +   A  ++     +     +   + +   L  G + +A   + +   +  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 150 NKRIDTELLERIVLNLE 166
           N     EL  R+   LE
Sbjct: 121 NXPEFXELSTRVSSMLE 137

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 68.8 bits (168), Expect = 7e-15
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 11  FQMISQLE------LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR 64
             M++++       L SLA + Y  G YE +  + +A   L+      +  LGA      
Sbjct: 10  IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69

Query: 65  DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124
             + A+  ++    +D          A   +   +  EA      A +L  N  +  E  
Sbjct: 70  QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129

Query: 125 SHVALDVGNIGQALEAVQ 142
                    +   LEA++
Sbjct: 130 -------TRVSSMLEAIK 140

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 68.4 bits (167), Expect = 2e-14
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 3/147 (2%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
             R       ++   E      +  +  N    + W  LG   L   D   +L  + +A+
Sbjct: 12  RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQAL 71

Query: 78  QLDPENGEAWNIIACLHMIKNK---SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134
           QL  EN E +  +A +   +     + +      +AL L  N        +  A    N 
Sbjct: 72  QLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY 131

Query: 135 GQALEAVQMVLNITNNKRIDTELLERI 161
            QA+E  Q V+++ + +   T+L+E I
Sbjct: 132 AQAIELWQKVMDLNSPRINRTQLVESI 158

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 10/64 (15%), Positives = 29/64 (45%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           + A+AL+S        L + A    +  +A++++ + + L+        ++  ++M K  
Sbjct: 105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLL 164

Query: 100 SKEA 103
            + +
Sbjct: 165 QRRS 168

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 7/106 (6%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
              S         + +  EA         + W +LG    +      A+     A  LDP
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127
           ++      +A  H  ++ +  A  + +  L  +         Y  +
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-------PQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 22/100 (22%), Positives = 36/100 (36%)

Query: 48  LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAF 107
           +Y +     G + LK  ++ +A   F    Q +PE  EAW  +        K   A IA 
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 108 KEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
             A  L      +    +    +  N   AL +++  L  
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.3 bits (172), Expect = 3e-14
 Identities = 21/122 (17%), Positives = 43/122 (35%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           L   A + + R  +     +    + ++    D +    A+  ++ +  K   +    V 
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
             PE    W  +   ++  NK  EA   F ++  +       W  ++H     G   QA+
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427

Query: 139 EA 140
            A
Sbjct: 428 SA 429

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 17/125 (13%)

Query: 22  LARSAYNRGEYETSKI-------LREAAMALNSLYPDGWFALGAAALKARDVEKALDVFT 74
           L   A+N+ + +T+         L +   +    +   W  LG A  K +  + A+D   
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

Query: 75  RAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134
           + + L   +      IA +++ K     A     E+L +  N     +           +
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD----------LL 590

Query: 135 GQALE 139
            +ALE
Sbjct: 591 KRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 25/121 (20%), Positives = 49/121 (40%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
           +  GE     ++    +  +      W A+G   L    + +A   F+++  +DP+ G A
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
           W   A    I+ +  +A  A+  A +L +     +       + +GNI  A E +Q    
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

Query: 147 I 147
           +
Sbjct: 470 L 470

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 13/122 (10%), Positives = 34/122 (27%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           L  L  +  +  +         +++       D                  L + T+ ++
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           +DP N + + +         +  + ++   + +         W       L V  I +A 
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393

Query: 139 EA 140
             
Sbjct: 394 RY 395

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.3 bits (154), Expect = 8e-12
 Identities = 19/155 (12%), Positives = 51/155 (32%), Gaps = 15/155 (9%)

Query: 11  FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKAL 70
           +  ++++     AR  +++            +  ++  +   W     +     + ++A+
Sbjct: 383 YLCVNKISE---ARRYFSK------------SSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427

Query: 71  DVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD 130
             +T A +L       +  +   HM       A    + +  L +    L      VA +
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487

Query: 131 VGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165
             ++  A+   Q  L +    + + +       NL
Sbjct: 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 14/135 (10%)

Query: 27  YNRG-EYETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
              G ++     +  A      + AL    P     LG  A    D++ A++ F  A+ L
Sbjct: 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504

Query: 80  -------DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132
                  +      W  +   +        A  A  + L L  N   +    + V L   
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564

Query: 133 NIGQALEAVQMVLNI 147
             G A+  +   L I
Sbjct: 565 IPGLAITHLHESLAI 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 16/131 (12%), Positives = 45/131 (34%), Gaps = 1/131 (0%)

Query: 28  NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW 87
            R + + +  L      +  L     +  G       + ++A + +  A+ +D +  EA+
Sbjct: 179 FRKDEKNANKLLMQDGGIK-LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237

Query: 88  NIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
           + +   H++    +   +         +       +   + L+  +    L   +  L+ 
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297

Query: 148 TNNKRIDTELL 158
            N     ++LL
Sbjct: 298 INGLEKSSDLL 308

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 8/132 (6%), Positives = 40/132 (30%), Gaps = 3/132 (2%)

Query: 19  LRSLARSAYNRGEYETSKILR---EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR 75
              L  +     + E   +L+         ++ +    + L        D  +  + +  
Sbjct: 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296

Query: 76  AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135
           ++    ++ +     A    ++++  +      + L++      ++  +     + G   
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356

Query: 136 QALEAVQMVLNI 147
           +       +++ 
Sbjct: 357 KLYLISNDLVDR 368

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 18/148 (12%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           LR     A  + +Y+ +  + E  + +     D  F L        D  +A  + T+   
Sbjct: 87  LRLWRHDALMQQQYKCAAFVGEKVLDITGNPND-AFWLAQVYCCTGDYARAKCLLTKE-D 144

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW----------------QLWE 122
           L   +     + A   +     + A     E    +++                   +  
Sbjct: 145 LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY 204

Query: 123 NYSHVALDVGNIGQALEAVQMVLNITNN 150
               V  ++ N  +A E  +  L +   
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAK 232

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.5 bits (165), Expect = 6e-14
 Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 1/143 (0%)

Query: 6   KKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARD 65
             + K   IS      LA +      Y+ + +  +  +       D   A     +    
Sbjct: 44  TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103

Query: 66  VEKALDVFTRAVQLDPENGEAWNIIA-CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124
            + AL ++ + +QL+ +N  A   +    ++   + K+      + L             
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 125 SHVALDVGNIGQALEAVQMVLNI 147
               L      +A  ++Q V+  
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 14/119 (11%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAA-ALKARDVEKALDVFTRAV 77
           L + A     RG+ + +  + E  + L +        LG    L A   +K L+   + +
Sbjct: 91  LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136
               +   A        +   + ++A  + ++ +    +  +  +    +      + +
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWF----------------ALGAAAL 61
           E+     +A   G+   +       +ALN    + ++                 L  A  
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 62  KARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW 121
           K R+ +KA   +   +Q  P N +     A + + + + K+A   +++ L+L+ +     
Sbjct: 66  KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125

Query: 122 ENYSHVALDVGN-IGQALEAVQMVLNI 147
               +          + LE     L+ 
Sbjct: 126 IFLGNYYYLTAEQEKKKLETDYKKLSS 152

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 49  YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW----------------NIIAC 92
             D      +AA++A    +A+  F + + L+ +  E +                  +A 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 93  LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
            +       +A++ +KE L+   N     E  + + +  G    AL   + +L +
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.9 bits (169), Expect = 6e-14
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + SLA   Y   +++    L    M  +  +           ++     +   +  + V 
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84

Query: 79  LDPENGEAWNIIAC-LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137
           L P N  +W  + C   M+ +K++ A     +A  L++     W  Y H         QA
Sbjct: 85  LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144

Query: 138 LEA 140
           + A
Sbjct: 145 MAA 147

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 12/133 (9%)

Query: 15  SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFT 74
                   AR   ++            A  L   Y   W A G +     + ++A+  + 
Sbjct: 102 MVGHKNEHARRYLSK------------ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149

Query: 75  RAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134
            A QL          I   + + N SK A   F +AL +      +      VA   G  
Sbjct: 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW 209

Query: 135 GQALEAVQMVLNI 147
             A +     L  
Sbjct: 210 KTAEKWFLDALEK 222

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSL---------YPDGWFALGAAALKARDVEKALDV 72
           +   A+  GE++T++     A+              +      LG    K +   +ALD 
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 73  FTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132
             +A+ L P+N   ++ I  +H +    + A   F  AL L+R+         H      
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYI 318

Query: 133 NIGQALEA 140
              +A   
Sbjct: 319 GDSEAYIG 326

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 3/96 (3%)

Query: 30  GEY-ETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN 88
           G Y + S+ +   ++       D   +L        D +    + +  ++ DP +     
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 89  I-IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123
           + I  L  +   + E F    + + L  +    W  
Sbjct: 61  VHIGTLVELNKAN-ELFYLSHKLVDLYPSNPVSWFA 95

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 27  YNRG-EYETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
              G EY  +   + A      A+++    P     +G  A +  + + A   F  A++ 
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222

Query: 80  DPENG---------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD 130
               G            N +  +     K  EA    ++AL L       +    ++   
Sbjct: 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282

Query: 131 VGNIGQALEAVQMVLNI 147
           +GN   A++     L +
Sbjct: 283 MGNFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 16/137 (11%)

Query: 27  YNRG-EYETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
              G  +       +A      A  L          +G       + + A   F++A+ +
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW---------QLWENYSHVALD 130
            PE+    + +  +     + K A   F +AL+  +             L  N  HV   
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248

Query: 131 VGNIGQALEAVQMVLNI 147
           +    +AL+  +  L +
Sbjct: 249 LKKYAEALDYHRQALVL 265

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 15/86 (17%), Positives = 30/86 (34%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           L        +Y  +      A+ L       + A+G       + E A+D F  A+ L  
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAF 107
           ++  +  ++     +     EA+I  
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 7/81 (8%), Positives = 24/81 (29%)

Query: 67  EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126
           + +  V   +V    EN +    +A  H      K  +      ++           +  
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 127 VALDVGNIGQALEAVQMVLNI 147
             +++    +       ++++
Sbjct: 65  TLVELNKANELFYLSHKLVDL 85

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 25/133 (18%), Positives = 52/133 (39%)

Query: 11  FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKAL 70
            +      LRS A  A++  +Y  +    +  + +     +         +K  +  KA+
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174

Query: 71  DVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD 130
                A +L  +N EA+  I+ L+      + +    +E LKL ++  + + +Y  V   
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234

Query: 131 VGNIGQALEAVQM 143
              I  A E ++ 
Sbjct: 235 NKLIESAEELIRD 247

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 15/145 (10%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           +   L +     G+   +     AA+  +      ++      L     + AL   T+ +
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV---------- 127
            L  +   A      L + + K  EA   FK+ LK   +  +  E  S +          
Sbjct: 65  ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLR 124

Query: 128 -----ALDVGNIGQALEAVQMVLNI 147
                A D  +   A+  +  +L +
Sbjct: 125 SQALDAFDGADYTAAITFLDKILEV 149

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 26/98 (26%), Positives = 40/98 (40%)

Query: 50  PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKE 109
            +    LG   L A  +  AL  F  AV  DP+N  A+   A + +   KSK A     +
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 110 ALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
            + LK +         H+ L  G + +A +  + VL  
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 16/106 (15%), Positives = 41/106 (38%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
           +  + +       +    A    D   A+    + +++   + E   + A   + + + +
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171

Query: 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
           +A    K A KLK +  + +   S +   +G+   +L  V+  L +
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPD----GWFALGAAALKARDVEKALDVFT 74
           L   A      G Y  +    E+ M       +        +     K     +A+ + +
Sbjct: 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296

Query: 75  RAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123
             +Q++P+N  A    A  ++I+    EA   ++ A +   N  Q+ E 
Sbjct: 297 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 22/146 (15%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           Y R   +      + A       +AL   +       G   LK   +++A D F + ++ 
Sbjct: 41  YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100

Query: 80  DPENGEAWNIIACLHMIK---------------NKSKEAFIAFKEALKLKRNGWQLWENY 124
           +P   E     + L                        A     + L++     +L E  
Sbjct: 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160

Query: 125 SHVALDVGNIGQALEAVQMVLNITNN 150
           +   +  G   +A+  ++    + ++
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSD 186

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 7/83 (8%), Positives = 25/83 (30%), Gaps = 7/83 (8%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
                 +   +   EA       + +     +       A L     ++A+  +  A + 
Sbjct: 276 ERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335

Query: 80  DPENGEAWNIIACLHMIKNKSKE 102
           +  + +    +     +  +S++
Sbjct: 336 NENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 4/104 (3%)

Query: 51  DGWFALGAAALKARDVEKALDVFTRAVQLDPENGE----AWNIIACLHMIKNKSKEAFIA 106
           +         ++      A   +   ++ +P   E    +   I        K  EA   
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294

Query: 107 FKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
             E L+++ +     ++ +   L      +A++  +       N
Sbjct: 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 20/129 (15%), Positives = 46/129 (35%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
                   G+   + +  EAA+  +    + W  LG    +  + + A+    R ++L P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
            N +A   +A  +   +  ++A  A K  +K       L +N          + ++    
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 142 QMVLNITNN 150
            ++  +   
Sbjct: 191 SVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 24/127 (18%), Positives = 44/127 (34%)

Query: 21  SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
           S  + A N+     S+               G F  G   LK  D+   +     A+  D
Sbjct: 36  SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95

Query: 81  PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
           P + EAW  +          + A +A +  L+L+ N  +     +    +  +   A EA
Sbjct: 96  PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155

Query: 141 VQMVLNI 147
           ++  +  
Sbjct: 156 LKNWIKQ 162

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
           +  GE+  +     AA+ +       W  LGA        E+A++ +TRA+++ P    +
Sbjct: 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
              +    +     +EA   F  AL L+R      +          NI  AL     +++
Sbjct: 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG--NIWAALRIALSLMD 341

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 3   PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY--PDGWFALGAAA 60
           P  K L K +  S    R +++S  +    E  K L   A   N     PD    LG   
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223

Query: 61  LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120
             + +  +A+D F  A+ + PE+   WN +       ++S+EA  A+  AL+++    + 
Sbjct: 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283

Query: 121 WENYSHVALDVGNIGQALEAVQMVLNI 147
             N     +++G   +A+      L++
Sbjct: 284 RYNLGISCINLGAYREAVSNFLTALSL 310

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 12/125 (9%), Positives = 34/125 (27%), Gaps = 4/125 (3%)

Query: 23  ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE 82
           A++A         +   +       +    W +    A     V  +   +    +   +
Sbjct: 8   AKAAVESDT----EFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFK 63

Query: 83  NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ 142
           +           + +       +  + A+       + W+       +  N   A+ A+Q
Sbjct: 64  DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123

Query: 143 MVLNI 147
             L +
Sbjct: 124 RCLEL 128

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 12/139 (8%)

Query: 21  SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAA---------ALKARD-VEKAL 70
           +LA S  N    + +    +  +  N  Y         +         +      +E   
Sbjct: 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197

Query: 71  DVFTRAVQLDPENGEA--WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128
           +++  A   + +  +      +  L  +  +   A  AF  AL ++   + LW       
Sbjct: 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257

Query: 129 LDVGNIGQALEAVQMVLNI 147
            +     +A+EA    L I
Sbjct: 258 ANGDRSEEAVEAYTRALEI 276

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 65.2 bits (159), Expect = 1e-13
 Identities = 15/99 (15%), Positives = 33/99 (33%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           ++ S A   YN+G  E +++        +    D    L A        ++A D++  A 
Sbjct: 38  DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
            L   +           +      +A   F+  ++   +
Sbjct: 98  ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 19/112 (16%), Positives = 45/112 (40%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
             A+     D  ++          +E+A   F      D  N +    +A ++ IK + +
Sbjct: 28  INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87

Query: 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI 153
           +A   +  A  L +N +    +     L +    +A E  ++V+  +N++++
Sbjct: 88  QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 26/127 (20%), Positives = 52/127 (40%)

Query: 17  LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
             LRS A +A+  G+Y  +    +  + +     +         +K  +  KA+     A
Sbjct: 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203

Query: 77  VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136
            +L  +N EA+  I+ L+      + +    +E LKL ++  + + +Y  V      I  
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263

Query: 137 ALEAVQM 143
           A E ++ 
Sbjct: 264 AEELIRD 270

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 21/111 (18%), Positives = 39/111 (35%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           +   L +     G+   +     AA+  +      ++      L     + AL   T+ +
Sbjct: 28  KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128
           QL  +   A      L + + K  EA   FK+ LK   +  +  E  S + 
Sbjct: 88  QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 6/136 (4%)

Query: 27  YNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGE 85
           ++ G +  T  +  ++         +    LG   L A  +  AL  F  AV  DP+N  
Sbjct: 7   HSSGVDLGTENLYFQSMAD-----VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 61

Query: 86  AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145
           A+   A + +   KSK A     + ++LK +         H+ L  G + +A +  + VL
Sbjct: 62  AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121

Query: 146 NITNNKRIDTELLERI 161
               ++  + E   ++
Sbjct: 122 KSNPSENEEKEAQSQL 137

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 4/140 (2%)

Query: 17  LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFAL----GAAALKARDVEKALDV 72
            +L   A      G Y  +    E+ M       +              K     +A+ V
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317

Query: 73  FTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132
            +  +Q++P+N  A    A  ++I+    EA   ++ A +   N  Q+ E        + 
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377

Query: 133 NIGQALEAVQMVLNITNNKR 152
              +      + +     K+
Sbjct: 378 QSQKRDYYKILGVKRNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 15/141 (10%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFAL---------------GAAALKARDV 66
                  +G+ + ++   +  +  N    +   A                   A  + D 
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 67  EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126
             A+    + +++   + E   + A   + + + ++A    K A KLK +  + +   S 
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219

Query: 127 VALDVGNIGQALEAVQMVLNI 147
           +   +G+   +L  V+  L +
Sbjct: 220 LYYQLGDHELSLSEVRECLKL 240

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 22/146 (15%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           Y R   +      + A       + L   +       G   LK   +++A D F + ++ 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 80  DPENGEAWNIIACLHMI---------------KNKSKEAFIAFKEALKLKRNGWQLWENY 124
           +P   E     + L                        A     + L++     +L E  
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183

Query: 125 SHVALDVGNIGQALEAVQMVLNITNN 150
           +   +  G   +A+  ++    + N+
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKND 209

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 67.5 bits (164), Expect = 3e-13
 Identities = 19/99 (19%), Positives = 49/99 (49%)

Query: 49  YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFK 108
           + D    L     +  ++E+A+ ++ +A+++ PE   A + +A +   + K +EA + +K
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 109 EALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
           EA+++       + N  +   ++ ++  AL+     + I
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 65.6 bits (159), Expect = 1e-12
 Identities = 21/126 (16%), Positives = 51/126 (40%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA     +G  E +  L   A+ +   +      L +   +   +++AL  +  A+++ P
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
              +A++ +          + A   +  A+++         N + +  D GNI +A+ + 
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 142 QMVLNI 147
           +  L +
Sbjct: 135 RTALKL 140

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 62.9 bits (152), Expect = 1e-11
 Identities = 30/126 (23%), Positives = 65/126 (51%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA     +G+ + + +  + A+ ++  + D +  +G    + +DV+ AL  +TRA+Q++P
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
              +A + +A +H       EA  +++ ALKLK +    + N +H    V +     E +
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168

Query: 142 QMVLNI 147
           + +++I
Sbjct: 169 KKLVSI 174

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 13/98 (13%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           +  +     + + +      A+ +N  + D    L +    + ++ +A+  +  A++L P
Sbjct: 83  MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

Query: 82  ENGEAW-NIIACLHMIKNKSKEAFIAFKEALKLKRNGW 118
           +  +A+ N+  CL ++ + +       K+ + +  +  
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQL 179

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 30/69 (43%)

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
             P + ++ N +A +   +   +EA   +++AL++         N + V    G + +AL
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 139 EAVQMVLNI 147
              +  + I
Sbjct: 64  MHYKEAIRI 72

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 66.7 bits (163), Expect = 6e-13
 Identities = 24/121 (19%), Positives = 53/121 (43%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
            +R +        + A+ L+S     ++  G      ++ ++A   F +A +LDPEN   
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
           +  +ACL   +NK  +    F EA +      ++   ++ +  D  +  +AL+   + + 
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400

Query: 147 I 147
           +
Sbjct: 401 L 401

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 16/120 (13%)

Query: 23  ARSAYNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKAR---------DV 66
                   E         +A      A+ L +     +  +     KA          + 
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431

Query: 67  EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126
            +A ++  +A +LDP + +A   +A + + +    EA   F+E+  L R   +  +  + 
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 12/157 (7%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA  AY   +++  + L   A       P+             D +KAL  +  A++L+ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 82  ENGEAWNIIACL---------HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132
           +    +  IA L         +       EA    ++A KL     Q     + + L   
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463

Query: 133 NIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRT 169
           +I +A+   +   ++    R   E L+ I      + 
Sbjct: 464 DIDEAITLFEESADL---ARTMEEKLQAITFAEAAKV 497

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 3/147 (2%)

Query: 3   PAMKKLWKFQMISQLELRSLARSAYNR--GEYETSKILREAAMALNSLYPDGWFALGAAA 60
             +            E    A  ++ +    +E           L           G   
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247

Query: 61  LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120
               D   A +   +A++L P    ++  +A +   +N S E +  F +ALKL  N   +
Sbjct: 248 FLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

Query: 121 WENYSHVALDVGNIGQALEAVQMVLNI 147
           + +   +   + N  QA +       +
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDKAKEL 333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           Y+RG+     +   +A      A  L+      +  L   A +    +    +F+ A + 
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN---------YSHVALD 130
            PE  E  N  A +   KN   +A   +  A++L+     ++                  
Sbjct: 368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427

Query: 131 VGNIGQALEAVQMVLNI 147
           V N  +A   ++    +
Sbjct: 428 VENFIEATNLLEKASKL 444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 15/120 (12%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 49  YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFK 108
           Y       G    + +  + A+  +  A++L   +   ++ ++  ++     K+      
Sbjct: 5   YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMST 63

Query: 109 EALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGR 168
           +AL+LK +  ++    +     +G    A+  + ++    +      E +    LN +  
Sbjct: 64  KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM 123

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALN---SLYPD--GWFALGAAALKARDVEKALDV 72
            L+      +   +Y+      +A    N    L  D   +  L A  +   D++K +++
Sbjct: 8   ALKDKGNQFFRNKKYD------DAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEM 61

Query: 73  FTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132
            T+A++L P+  +     A  +    K  +A                  E      L+  
Sbjct: 62  STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121

Query: 133 NIGQALEAVQ 142
            + +  E   
Sbjct: 122 AMSKLKEKFG 131

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 2/117 (1%)

Query: 32  YETSKILREAAMALNSLYPDGWFALGAAALKA-RDVEKALDVFTRAVQLDPENGEAWNII 90
            E  K L      L    P+ +     +  KA R  E+ LD      +L  +   +    
Sbjct: 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243

Query: 91  ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
                +KN    A    K+A++L       +   + +  D  +  +        L +
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL 299

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.3 bits (162), Expect = 8e-13
 Identities = 15/132 (11%), Positives = 30/132 (22%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         +          V++ L V  +A  
Sbjct: 75  IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L PE   A              +       +A  L         +       +  + + L
Sbjct: 135 LTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL 194

Query: 139 EAVQMVLNITNN 150
             +     +T  
Sbjct: 195 PVLCQAHGLTPQ 206

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 14/113 (12%), Positives = 28/113 (24%)

Query: 36  KILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM 95
             L  A + L         +          V++ L V  +A  L P+   A         
Sbjct: 58  NALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117

Query: 96  IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148
                +       +A  L         ++      +  +   L  +     +T
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 16/130 (12%), Positives = 31/130 (23%)

Query: 21  SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
           S           +    +   A  L         + G        V++ L V  +A  L 
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

Query: 81  PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
           P+   A              +       +A  L         + S     +  + + L  
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPV 298

Query: 141 VQMVLNITNN 150
           +     +T  
Sbjct: 299 LCQAHGLTPQ 308

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 15/130 (11%), Positives = 31/130 (23%)

Query: 21  SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
           S +         +    +   A  L         + G        V++ L V  +A  L 
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340

Query: 81  PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
           P+   A              +       +A  L         +       +  + + L  
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 400

Query: 141 VQMVLNITNN 150
           +     +T  
Sbjct: 401 LCQAHGLTPE 410

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 7/131 (5%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
            + G   +  + ++        A  L         +          V++ L V  +A  L
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 373

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
            PE   A              +       +A  L         ++      +  + + L 
Sbjct: 374 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLP 433

Query: 140 AVQMVLNITNN 150
            +     +T  
Sbjct: 434 VLCQAHGLTPQ 444

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 15/130 (11%), Positives = 29/130 (22%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         +          V+  L V  +A  
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG 168

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L PE   A              +       +A  L         +       +  + + L
Sbjct: 169 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 228

Query: 139 EAVQMVLNIT 148
             +     +T
Sbjct: 229 PVLCQAHGLT 238

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 7/131 (5%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
            + G   +  + ++        A  L         + G        V++ L V  +A  L
Sbjct: 212 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 271

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
            P+   A    +         +       +A  L         +       +  + + L 
Sbjct: 272 TPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 331

Query: 140 AVQMVLNITNN 150
            +     +T  
Sbjct: 332 VLCQAHGLTPQ 342

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 18/134 (13%), Positives = 30/134 (22%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         + G        V++ L V  +A  
Sbjct: 347 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L PE   A              +       +A  L         +       + +I   L
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQL 466

Query: 139 EAVQMVLNITNNKR 152
                 L    N  
Sbjct: 467 SRPDPALAALTNDH 480

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 14/131 (10%), Positives = 33/131 (25%), Gaps = 7/131 (5%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
            + G   +  + ++        A  L         +          V++ L V  +A  L
Sbjct: 246 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL 305

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
            P+   A              +       +A  L         ++      +  + + L 
Sbjct: 306 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 365

Query: 140 AVQMVLNITNN 150
            +     +T  
Sbjct: 366 VLCQAHGLTPE 376

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 15/132 (11%), Positives = 31/132 (23%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         + G        V++ L V  +A  
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 202

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P+   A              +       +A  L         +       +  + + L
Sbjct: 203 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 262

Query: 139 EAVQMVLNITNN 150
             +     +T  
Sbjct: 263 PVLCQAHGLTPQ 274

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 12/121 (9%), Positives = 27/121 (22%)

Query: 30  GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI 89
                +  LR   + L++         G              +    + L PE   A   
Sbjct: 18  ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIAS 77

Query: 90  IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN 149
                      +       +A  L         ++      +  + + L  +     +T 
Sbjct: 78  HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137

Query: 150 N 150
            
Sbjct: 138 E 138

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 3/129 (2%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA       +Y  +    E A+  +      W          +  +KA + F +A+ + P
Sbjct: 14  LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73

Query: 82  ENGEAWNII-ACLHMIKNKSKEAFIAFKEALK--LKRNGWQLWENYSHVALDVGNIGQAL 138
           ++ E  N     L    N+  E+   F +AL        +    N    +   G  G A 
Sbjct: 74  DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133

Query: 139 EAVQMVLNI 147
             ++  L  
Sbjct: 134 AYLKRSLAA 142

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
              L    ++ +D  +A      A++ DP+N  AW + A ++     + +A  +F++AL 
Sbjct: 11  KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70

Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQM 143
           +K +  ++  NY    L  G + +  E++  
Sbjct: 71  IKPDSAEINNNYG-WFL-CGRLNRPAESMAY 99

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 12/75 (16%), Positives = 22/75 (29%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
           A              G  + K      A     R++   P+   A+  +A   M+  +  
Sbjct: 105 ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164

Query: 102 EAFIAFKEALKLKRN 116
           +A   FK+       
Sbjct: 165 DADYYFKKYQSRVEV 179

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 12/135 (8%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKAR--DVEKALDVFTRAV 77
             R E Y+  K+  +A      A+++     +     G   L  R     +++  F +A+
Sbjct: 46  LVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF-LCGRLNRPAESMAYFDKAL 104

Query: 78  Q--LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135
                P    A          + +   A    K +L  +      ++  +   +  G +G
Sbjct: 105 ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164

Query: 136 QALEAVQMVLNITNN 150
            A    +   +    
Sbjct: 165 DADYYFKKYQSRVEV 179

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
               +  +G++  ++   + ++A    +P  +  L    + A  +  A   F +      
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
                  ++     I      A  A++   +L+ N
Sbjct: 179 VLQADDLLLG--WKIAKALGNAQAAYEYEAQLQAN 211

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 18/116 (15%), Positives = 37/116 (31%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
              S         + +  EA         + W +LG    +      A+     A  LDP
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137
           ++      +A  H  ++ +  A  + +  L  +    QL        +D+ ++   
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 27/134 (20%), Positives = 54/134 (40%)

Query: 14  ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVF 73
           I  L ++S         EY   + L  AA+ +N        +LG     + + + A    
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195

Query: 74  TRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN 133
            RAV+L P++ + WN +       N+ +EA  A+  AL +     ++  N +    ++  
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255

Query: 134 IGQALEAVQMVLNI 147
              A + +   + +
Sbjct: 256 YDLAAKQLVRAIYM 269

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 22/100 (22%), Positives = 35/100 (35%)

Query: 48  LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAF 107
           +Y +     G + LK  ++ +A   F    Q  PE  EAW  +        K   A IA 
Sbjct: 19  MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIAL 78

Query: 108 KEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
             A  L      +    +    +  N   AL +++  L  
Sbjct: 79  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 2/116 (1%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
                Y+++      A+ L       W  LGA        ++ALD + RA+ ++P     
Sbjct: 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV--GNIGQALEA 140
              +A  +   ++   A      A+ ++  G       S  A           L  
Sbjct: 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 16/106 (15%), Positives = 39/106 (36%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
             A   +      +         +  +   +   A++++P + +    +  L+ + N   
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189

Query: 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
            A    + A++L+ +  QLW        +     +AL+A    L+I
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.0 bits (156), Expect = 6e-12
 Identities = 26/126 (20%), Positives = 53/126 (42%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA +  ++   +      + A+ LN  YP  ++  G      +D + A + F +A  L+P
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
           EN   +  +ACL   + K  E+   F E         ++   ++ +  D G+   A++  
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401

Query: 142 QMVLNI 147
            +   +
Sbjct: 402 DIAKRL 407

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 20/142 (14%), Positives = 51/142 (35%), Gaps = 4/142 (2%)

Query: 30  GEYETSKILREAAMALN----SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGE 85
           G +   +        L+      Y       G     A++  +A+  +  A++LDP    
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 86  AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL 145
            ++ I+  ++     ++      +AL++K +  +     +     +GN   A+  + ++ 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120

Query: 146 NITNNKRIDTELLERIVLNLEG 167
              +      E +    LN + 
Sbjct: 121 LNGDFDGASIEPMLERNLNKQA 142

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 4/137 (2%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           +L++     +    +  +    + A+ L+   P  +  + A  +   D+EK ++  T+A+
Sbjct: 27  QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL 86

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137
           ++ P++ +A    A  +       +A                         L+     QA
Sbjct: 87  EIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNG----DFDGASIEPMLERNLNKQA 142

Query: 138 LEAVQMVLNITNNKRID 154
           ++ +   L+    +   
Sbjct: 143 MKVLNENLSKDEGRGSQ 159

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 25/147 (17%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKAR--------------- 64
               E          A      A  L  +       +G    KA                
Sbjct: 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441

Query: 65  -DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123
                A+ + T+A +LDP + +A   +A L +   K  EA   F+++  L R   +  + 
Sbjct: 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501

Query: 124 YSHVALDVGNIGQALEAVQMVLNITNN 150
            +    +   I + L A  ++      
Sbjct: 502 TTF--AEAAKIQKRLRADPIISAKMEL 526

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 21/144 (14%), Positives = 38/144 (26%), Gaps = 23/144 (15%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           Y+RG+ Y   +  + A      A +LN      +  L     K     ++   F      
Sbjct: 314 YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL----------------KRNGWQLWEN 123
            P   E     A +   +     A   +  A +L                K        +
Sbjct: 374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433

Query: 124 YSHVALDVGNIGQALEAVQMVLNI 147
                LD      A++ +     +
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACEL 457

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 16/142 (11%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA   Y +G++  S+             P+             D + A+  +  A +L+ 
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 82  ENGEAWN----------------IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS 125
              +                         + + K   A     +A +L     Q     +
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469

Query: 126 HVALDVGNIGQALEAVQMVLNI 147
            + L +  I +A+E  +    +
Sbjct: 470 QLKLQMEKIDEAIELFEDSAIL 491

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 3/123 (2%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA--RDVEKALDVFTRAVQLDPENG 84
                Y+T+  L   A+       D  + +    L          L   T    L     
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243

Query: 85  EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144
            A       H +KN   +A +  +E++ L       +   +    D  N  +  +  Q  
Sbjct: 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKA 302

Query: 145 LNI 147
           +++
Sbjct: 303 VDL 305

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 1/117 (0%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
                   G+   + +L EAA+  +  + + W  LG    +      A+    R ++L P
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           +N  A   +A     ++  ++A    ++ L+       L             +G + 
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE-GAGGAGLGPSK 185

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 23/100 (23%), Positives = 38/100 (38%)

Query: 48  LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAF 107
                 F  G   L+  D+  A+ +F  AVQ DP++ EAW  +        +   A  A 
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 108 KEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
           +  L+LK +        +    +     QA E ++  L  
Sbjct: 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 1/115 (0%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
              GEY+ +     AA+++       W  LGA        E+A+  + RA++L P    +
Sbjct: 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG-NIGQALEA 140
              +    +     +EA   F EAL ++R           ++ ++   +  AL  
Sbjct: 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 28/102 (27%), Positives = 50/102 (49%)

Query: 46  NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI 105
            S+ PD    LG     + + +KA+D FT A+ + P +   WN +       N+S+EA  
Sbjct: 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272

Query: 106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
           A++ AL+L+    +   N     +++G   +A+E     LN+
Sbjct: 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 16/77 (20%), Positives = 27/77 (35%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           EA +A  +      F LG    +    + AL     A+  DP    AW  +      +  
Sbjct: 9   EAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD 68

Query: 100 SKEAFIAFKEALKLKRN 116
              A  A++  L   ++
Sbjct: 69  RAGARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 9/82 (10%), Positives = 22/82 (26%)

Query: 66  VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS 125
           ++   +     +    +N      +   +    +   A    + AL         W+   
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 126 HVALDVGNIGQALEAVQMVLNI 147
                 G+   A +A +  L  
Sbjct: 61  KTLQGQGDRAGARQAWESGLAA 82

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 10/66 (15%), Positives = 22/66 (33%)

Query: 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
          +L ++     +++ +     AA+  +  Y   W  LG       D   A   +   +   
Sbjct: 24 TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83

Query: 81 PENGEA 86
             G+ 
Sbjct: 84 QSRGDQ 89

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 7/109 (6%)

Query: 22  LARSAYNRG-EYETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFT 74
            A  A   G EY T      A       +        G+    AA  K     +A+    
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 75  RAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123
           +A++ DP    A+   A   +   +   A      A             
Sbjct: 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 7/138 (5%)

Query: 17  LELRSLARSAYNRG-------EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKA 69
           +E    + + +            E      EA   +N    +     G       D   A
Sbjct: 99  IEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158

Query: 70  LDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVAL 129
           +  +T  ++  PE+   ++  A          EA     +A++   N  + +   +   +
Sbjct: 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218

Query: 130 DVGNIGQALEAVQMVLNI 147
            V     ALE +      
Sbjct: 219 AVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 7/137 (5%)

Query: 21  SLARSAYNRG-EYETSKILREAAMALN---SLYPD--GWFALGAAALKARDVEKALDVFT 74
           S+A      G ++  ++   EA    N    L+ D        AA  +  + E A+    
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLN 62

Query: 75  RAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134
            AV+   E    + +I+        +       K+ ++  +         + +   + N 
Sbjct: 63  DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNA 121

Query: 135 GQALEAVQMVLNITNNK 151
            + L+  +    +   K
Sbjct: 122 EKELKKAEAEAYVNPEK 138

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 24/126 (19%), Positives = 49/126 (38%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
                   G+YE +      A+  N      +           ++E+AL  + +A++LD 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
               A+     ++++K   KEA   F++AL+       L+     V + +     AL  +
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148

Query: 142 QMVLNI 147
           Q  + +
Sbjct: 149 QRAVEL 154

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           Y  G  Y   ++ +EA      A+       D ++ LG   +K    + AL    RAV+L
Sbjct: 95  YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           +  + EA          +    EA   F    +        + N         N  +ALE
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214

Query: 140 AVQMVLNI 147
            +   ++I
Sbjct: 215 MLDKAIDI 222

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 22/121 (18%), Positives = 51/121 (42%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
            +  E E +    + A+ L+S     ++  G   +     ++A D+F +A++   ENG+ 
Sbjct: 68  SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
           + ++  + +   + K A    + A++L  N  +    +     + G + +AL     V  
Sbjct: 128 FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187

Query: 147 I 147
            
Sbjct: 188 Q 188

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.3 bits (129), Expect = 8e-09
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           Y  G      +  + A      A+ LN    +  F  G        +++AL  F    + 
Sbjct: 129 YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
           DP + +A+      +  K   ++A     +A+ ++
Sbjct: 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 18/100 (18%), Positives = 39/100 (39%)

Query: 48  LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAF 107
           +             +  D EKA + FT+A++ + E+   +   A L    N+ + A   +
Sbjct: 21  MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFY 80

Query: 108 KEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
            +AL+L  +    +    +V +      +A +  +  L  
Sbjct: 81  DKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           +  G       +L EA          +  + D ++  G       + EKAL++  +A+ +
Sbjct: 163 FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222

Query: 80  DPENGEAWN 88
            P++  A +
Sbjct: 223 QPDHMLALH 231

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 3/131 (2%)

Query: 20  RSLARSAYNRGEYETSKILREA---AMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
              A   Y   +Y+ ++   E     +         +   G   +K      A+  +  A
Sbjct: 41  NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100

Query: 77  VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136
           V  D    + +  I      K     A    ++ ++      +++              +
Sbjct: 101 VDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160

Query: 137 ALEAVQMVLNI 147
           A  +   VL +
Sbjct: 161 ADSSFVKVLEL 171

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 14/132 (10%), Positives = 36/132 (27%), Gaps = 3/132 (2%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKAL---DVFTRAVQ 78
            A   +    Y  +  +     A     P  +        +    + A    + +   V 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
                   +     + M K +   A   ++ A+        ++        + GN   A+
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128

Query: 139 EAVQMVLNITNN 150
           + ++  +  T  
Sbjct: 129 QYMEKQIRPTTT 140

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 50  PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEA---FIA 106
            D  F       K  +  +A++VF +       +   +N  A  +    K   A      
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 107 FKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
           +   +   +     +E Y  + +  G    A++  Q  ++ 
Sbjct: 63  YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.9 bits (138), Expect = 7e-10
 Identities = 13/116 (11%), Positives = 42/116 (36%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
             +G+   +    +AA+  ++   D +  +G+      +   A+    + ++    + + 
Sbjct: 85  MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ 142
           +  +   +    +  +A  +F + L+LK N +  +   +          +   A  
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 19/139 (13%), Positives = 47/139 (33%), Gaps = 18/139 (12%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
              G  +        A       +   +  P  ++ LG A    ++  KA   F + ++L
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171

Query: 80  DPENGEAWNIIACLHMIKN---KSKEAFIAFKEALKL--------KRNGWQLWENYSHVA 128
            P     +   A  +  ++   K   A   +++ +++        K    +  E  ++  
Sbjct: 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231

Query: 129 LDVGNIGQALEAVQMVLNI 147
               +  +A  A + +L +
Sbjct: 232 TINRDKVKADAAWKNILAL 250

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 18/106 (16%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEK---ALDVFTRA 76
           Y  G+ Y  +K   +A       + L      G+     A        K   A   + + 
Sbjct: 146 YELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205

Query: 77  VQLDPENG--------EAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
           +++    G        EA   IA  + I     +A  A+K  L L 
Sbjct: 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 9/53 (16%), Positives = 17/53 (32%)

Query: 36  KILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN 88
           ++             +    +       RD  KA   +   + LDP N +A +
Sbjct: 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAID 259

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARD---VEKALDVFTRAVQ 78
             R      + E +K+  E A+      P+    L  A+ +  +    + A+D   +A++
Sbjct: 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203

Query: 79  LDPENGEAWNIIAC----LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI 134
           L+P+N     ++A     +     +  E     +EAL+       +  + +         
Sbjct: 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEP 263

Query: 135 GQALEAVQMVLNITNN 150
            +A+E ++  L    N
Sbjct: 264 DKAIELLKKALEYIPN 279

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.6 bits (131), Expect = 6e-09
 Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 19/145 (13%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           L +      E    + L E A+       D   +      +  + +KA+++  +A++  P
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278

Query: 82  ENGEAWNIIACLHM-------------------IKNKSKEAFIAFKEALKLKRNGWQLWE 122
            N      I C +                    +      A    K+A +   N +++  
Sbjct: 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338

Query: 123 NYSHVALDVGNIGQALEAVQMVLNI 147
             + +        +A    Q   + 
Sbjct: 339 ILASLHALADQYEEAEYYFQKEFSK 363

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 6e-07
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 28  NRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR----DVEKALDVFTRAVQLDPEN 83
           N    + +      A+ LN         L     K R    +  +   +   A++  P  
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 84  GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY 124
            +     A  +  K++  +A    K+AL+   N   L    
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 23/155 (14%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA--------------- 63
           LRS A+    + E + +  L + A+            +G                     
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 64  ----RDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119
                 +  A+    +A + +       +I+A LH + ++ +EA   F++    +     
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

Query: 120 LWENYSHVAL----DVGNIGQALEAVQMVLNITNN 150
               +          +    +A+      + I   
Sbjct: 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 16  QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTR 75
            L LR+LAR+ +++            A+A+    P+ +  LG    +A + + A + F  
Sbjct: 55  SLGLRALARNDFSQ------------ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 102

Query: 76  AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135
            ++LDP    A            + K A        +   N         ++A    +  
Sbjct: 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL-YLAEQKLDEK 161

Query: 136 QALEAVQMVLNITNN 150
           QA E ++     ++ 
Sbjct: 162 QAKEVLKQHFEKSDK 176

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 6/131 (4%)

Query: 22  LARSAYNRGEYET-----SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
           LA       + E       +IL   A+  +       +  G           A + F++A
Sbjct: 11  LAVPLQPTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLGLRALARNDFSQA 69

Query: 77  VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136
           + + P+  E +N +            A+ AF   L+L         N        G    
Sbjct: 70  LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 129

Query: 137 ALEAVQMVLNI 147
           A + +      
Sbjct: 130 AQDDLLAFYQD 140

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 14/130 (10%)

Query: 23  ARSAYNRGEYETSKILREAAMAL----------NSLYPDGWFALGAAALKARDVEKALDV 72
              +      E     ++A   L             +    F LG  + +   +E+    
Sbjct: 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTL-MERLKAD 203

Query: 73  FTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG 132
            T    L     E    +   ++       A   FK A+    + +     Y+ + L   
Sbjct: 204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH-RYALLEL--S 260

Query: 133 NIGQALEAVQ 142
            +GQ  + + 
Sbjct: 261 LLGQDQDDLA 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 11/131 (8%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
              G     +     A       + L+  Y       G A       + A D      Q 
Sbjct: 81  NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN---GWQLWENYSHVALDVGNIGQ 136
           DP +      +  L   K   K+A    K+  +       GW + E Y     +   + +
Sbjct: 141 DPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 199

Query: 137 ALEAVQMVLNI 147
                    ++
Sbjct: 200 LKADATDNTSL 210

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 6/93 (6%)

Query: 23  ARSAYNRGEYETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
               +  G      ++           +L     +  F LG   L   D++ A  +F  A
Sbjct: 182 NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241

Query: 77  VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKE 109
           V  +  N            +  + ++      +
Sbjct: 242 VANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 4/124 (3%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
           Y  G  + ++    A    +   P     L  A  +  D ++A +V  +  +   +    
Sbjct: 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWG 180

Query: 87  WNIIAC-LHMIKNKSK--EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQM 143
           WNI+   L  I  ++          +   L  +  +         L +G++  A    ++
Sbjct: 181 WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240

Query: 144 VLNI 147
            +  
Sbjct: 241 AVAN 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           L      RG  E +K+    A+ ++    D   AL        + + A + + +A+  D 
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALK--LKRNGWQLWENYSHVALDVGNIGQALE 139
            N    N        + + +EA+    EA +  L     +++EN   V+L +    QA E
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162

Query: 140 AVQMVLNI 147
             +  L +
Sbjct: 163 YFEKSLRL 170

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 2/123 (1%)

Query: 27  YNRGEYETS-KILREA-AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG 84
           Y +  YE + + L EA    L       +  LG  +L+ +   +A + F ++++L+    
Sbjct: 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP 175

Query: 85  EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV 144
                +A L   + +   A   +    +      +       +A    +   A      +
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235

Query: 145 LNI 147
             +
Sbjct: 236 KRL 238

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 18/99 (18%), Positives = 40/99 (40%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
                    D +  LG   L+  + E+A     +A+++DP + +A   +A +   + + K
Sbjct: 29  TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK 88

Query: 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
            A   +++AL       ++  NY     +     +A + 
Sbjct: 89  LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQR 127

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 14/93 (15%), Positives = 28/93 (30%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           L   +    +   +K   E ++ LN   P     +     K R+   A   +    Q   
Sbjct: 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
           +N  +  +   L  +      A     +  +L 
Sbjct: 207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 11/90 (12%), Positives = 32/90 (35%)

Query: 58  AAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG 117
           ++ L  R          +  +   E  +A+  +   ++ +  +++A +  ++AL++  + 
Sbjct: 11  SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70

Query: 118 WQLWENYSHVALDVGNIGQALEAVQMVLNI 147
                  + V         A E  +  L  
Sbjct: 71  ADAHAALAVVFQTEMEPKLADEEYRKALAS 100

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 11/70 (15%), Positives = 19/70 (27%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           +A   Y   EY  ++   +                   A    D + A     +  +L P
Sbjct: 181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240

Query: 82  ENGEAWNIIA 91
            + E     A
Sbjct: 241 GSLEYQEFQA 250

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 13/130 (10%), Positives = 32/130 (24%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         +          +++ L V  +A  
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P+   A              +       +A  L  +      ++      +  + + L
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLL 314

Query: 139 EAVQMVLNIT 148
             +     +T
Sbjct: 315 PVLCQAHGLT 324

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 5e-10
 Identities = 13/132 (9%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 23  ARSAYNRGEYETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
             +  + G  +  + ++        A  L         +          V++ L V  + 
Sbjct: 396 VVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQT 455

Query: 77  VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136
             L P    A              ++      +A  L  +      +       +  + +
Sbjct: 456 HGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQR 515

Query: 137 ALEAVQMVLNIT 148
            L  +     +T
Sbjct: 516 LLPVLCQAHGLT 527

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 15/132 (11%), Positives = 33/132 (25%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         + G        V++ L V  +A  
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P+   A              +       +A  L  +      +       +  + + L
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 382

Query: 139 EAVQMVLNITNN 150
             +     +T +
Sbjct: 383 PVLCQAHGLTPD 394

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 14/130 (10%), Positives = 32/130 (24%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         +          V++ L V  +A  
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHG 288

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P+   A              +       +A  L  +      ++      +  + + L
Sbjct: 289 LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 348

Query: 139 EAVQMVLNIT 148
             +     +T
Sbjct: 349 PVLCQAHGLT 358

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 14/117 (11%), Positives = 30/117 (25%)

Query: 32  YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA 91
           + +   L  A + L         +          V++ L V  +A  L P    A     
Sbjct: 174 HASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHD 233

Query: 92  CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148
                    +       +A  L  +      +       +  + + L  +     +T
Sbjct: 234 GGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 290

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 5e-09
 Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 8/129 (6%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
            + G   +  + ++        A  L         +          V++ L V  +A  L
Sbjct: 298 ASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGL 357

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
            P+   A              +       +A  L  +      +       +  + + L 
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG-KQALETVQRLLP 416

Query: 140 AVQMVLNIT 148
            +     +T
Sbjct: 417 VLCQAHGLT 425

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 7e-09
 Identities = 14/132 (10%), Positives = 31/132 (23%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         +          V++ L V  +A  
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P+   A              +       +A  L  +      +       +  + + L
Sbjct: 526 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 585

Query: 139 EAVQMVLNITNN 150
             +     +T  
Sbjct: 586 PVLCQAHGLTQV 597

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 13/107 (12%), Positives = 26/107 (24%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
           A  L         + G        V++ L V  +A  L      A              +
Sbjct: 557 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQ 616

Query: 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148
                  +A  L         ++      +  + + L  +     +T
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 8e-08
 Identities = 15/132 (11%), Positives = 32/132 (24%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         + G        V++ L V  +A  
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P+   A              +       +A  L +       +       +  + + L
Sbjct: 560 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLL 619

Query: 139 EAVQMVLNITNN 150
             +     +T  
Sbjct: 620 PVLCQAHGLTPA 631

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 9e-08
 Identities = 14/109 (12%), Positives = 27/109 (24%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
           A  L         + G        V++ L V  +A  L  E   A              +
Sbjct: 659 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQ 718

Query: 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
                  +A  L  +      +       +  + + L  +     +T  
Sbjct: 719 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPA 767

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 1/130 (0%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         + G        V++ L V  +A  
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P+   A         +    +       +A  L  +      ++      +  + + L
Sbjct: 391 LTPDQVVAIASNGGKQAL-ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 449

Query: 139 EAVQMVLNIT 148
             +     +T
Sbjct: 450 PVLCQTHGLT 459

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 13/123 (10%), Positives = 31/123 (25%)

Query: 28  NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW 87
                +    +   A  L         +          V++ L V  +A  L P+   A 
Sbjct: 611 ALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 670

Query: 88  NIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
                        +       +A  L +       + +     +  + + L  +     +
Sbjct: 671 ASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGL 730

Query: 148 TNN 150
           T +
Sbjct: 731 TPD 733

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 12/107 (11%), Positives = 26/107 (24%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
              L         +          V++ L V  +A  L P+   A              +
Sbjct: 455 THGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQ 514

Query: 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT 148
                  +A  L  +      +       +  + + L  +     +T
Sbjct: 515 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 561

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 7/132 (5%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         +          V++ L V  +A  
Sbjct: 670 IASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHG 729

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P+   A              +       +A  L         +            QAL
Sbjct: 730 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN-------IGGKQAL 782

Query: 139 EAVQMVLNITNN 150
           E VQ +L +   
Sbjct: 783 ETVQRLLPVLCQ 794

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 3/133 (2%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAA-ALKARDVEKALDVFTRAV 77
           + S           +    +   A  L         + G   AL+   V++ L V  +A 
Sbjct: 365 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALET--VQRLLPVLCQAH 422

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA 137
            L P+   A              +       +   L         ++      +  + Q 
Sbjct: 423 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQL 482

Query: 138 LEAVQMVLNITNN 150
           L  +     +T +
Sbjct: 483 LPVLCQAHGLTPD 495

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 13/111 (11%), Positives = 27/111 (24%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
             A  L  +      +          V++ L V  +A  L P    A             
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 648

Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
            +       +A  L  +      +       +  + + L  +     +T  
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 22/132 (16%), Positives = 34/132 (25%), Gaps = 7/132 (5%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           + S           +    +   A  L         + G        V++ L V  +A  
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 763

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P    A              K+A    +  L +      L               QAL
Sbjct: 764 LTPAQVVAIA-------SNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQAL 816

Query: 139 EAVQMVLNITNN 150
           E VQ +L +   
Sbjct: 817 ETVQRLLPVLCQ 828

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 56.3 bits (136), Expect = 7e-10
 Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 19/142 (13%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
               A ++ +++ +    +A  A+   +    F +G      +++ +A   FTR++  D 
Sbjct: 12  EGVLAADKKDWKGA---LDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKL----------------KRNGWQLWENYS 125
               A+     L+    K   A    KEAL                  K    ++  N +
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 128

Query: 126 HVALDVGNIGQALEAVQMVLNI 147
            +        +A E + +  ++
Sbjct: 129 FMYAKKEEWKKAEEQLALATSM 150

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 3/98 (3%)

Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
            +  G  A   +D + ALD F+    +   +      I C++ I     EA  AF  ++ 
Sbjct: 9   LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65

Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN 150
             ++    +     +         A++ ++  L     
Sbjct: 66  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 35/143 (24%)

Query: 23  ARSAYNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTR 75
           +R  +N G  Y   K + EA      ++  +      +F  G    +    + A+     
Sbjct: 37  SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96

Query: 76  AVQLDPEN----------------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ 119
           A+     N                 E    IA ++  K + K+A      A  +K     
Sbjct: 97  ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-- 154

Query: 120 LWENYSHVALDVGNIGQALEAVQ 142
                         I +A+E V 
Sbjct: 155 ----------RHSKIDKAMECVW 167

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 57.3 bits (138), Expect = 9e-10
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 29  RGEYETSKILREAAMALNSLYPDGWFALGAA-ALKARDVEKALDVFTRAVQLDPENGEAW 87
           + E E +    E  +    +        G A  +      +A  + ++AV+L+PE  EAW
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 88  NIIACLHMIKNKSKEAFIAFKEALKLKRN 116
           N +  ++  K     A   F  AL   +N
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKN 169

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 55.4 bits (133), Expect = 4e-09
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 11/147 (7%)

Query: 12  QMISQLELRSLARSAYNRGEYETSK-ILREAAMALNSLY--PDGWFALGAAALKAR---- 64
            M S    + + R +    E E +K +L++    ++ LY   D +F   +     R    
Sbjct: 20  HMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD 79

Query: 65  ---DVEKALDVFTRAVQLDPENGEAWNIIA-CLHMIKNKSKEAFIAFKEALKLKRNGWQL 120
              ++EK L      +       +A  +    L++  + S EA +   +A+KL+    + 
Sbjct: 80  VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA 139

Query: 121 WENYSHVALDVGNIGQALEAVQMVLNI 147
           W     V    G++  A       L  
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTH 166

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 27/151 (17%)

Query: 17  LELRSLARSAYNRG----------EYETSKILREA------AMALNSLYPDGWFALGAAA 60
           L       S  N              E S+ + ++      A+ ++ L    W+ LG A 
Sbjct: 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY 223

Query: 61  LKA--------RDVEKALDVFTRAVQLD---PENGEAWNIIACLHMIKNKSKEAFIAFKE 109
           L          +  ++AL  + +A ++D     N +     A LH  +    EA   F +
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283

Query: 110 ALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
           A  L     +  +    +   +  +   LE+
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLES 314

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 19/111 (17%)

Query: 23  ARSAYNRG---------EYETSKILREAAMALN---------SLYPDGWFALGAAALKAR 64
            RS Y  G           +  KI ++A  A           S  PD             
Sbjct: 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272

Query: 65  DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115
              +AL+ F++A  LDP   E       L    ++     +  K   K K+
Sbjct: 273 SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL-LESKGKTKPKK 322

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 21/141 (14%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALG---------AAALKARDVEKALDVFTRAV 77
           + +G+  ++      A+            L          +    +R V  ++     AV
Sbjct: 148 WKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206

Query: 78  QLDPENGEAWNIIACLHMIK--------NKSKEAFIAFKEALKLKR---NGWQLWENYSH 126
           Q+D  +G +W I+   ++            S++A  A+ +A K+ R   +   L  N + 
Sbjct: 207 QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT 266

Query: 127 VALDVGNIGQALEAVQMVLNI 147
           +     + G+ALE       +
Sbjct: 267 LHKYEESYGEALEGFSQAAAL 287

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 20  RSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           R        +G  E +  + + A  +N  Y       G       + +KA     +A+ L
Sbjct: 88  RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           +    E  + +A L++   +  EA   + +AL+       L   Y+   L  G   +A  
Sbjct: 148 ED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206

Query: 140 AVQMVLNITNN 150
           A  +  +  ++
Sbjct: 207 AAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 8/101 (7%)

Query: 50  PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKE 109
                 LG         + AL +F RA++ +P++ EA   +A   +       A    K 
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 110 ALKLKRN--------GWQLWENYSHVALDVGNIGQALEAVQ 142
            +                    Y          G   +A+ 
Sbjct: 65  LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 11/135 (8%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
           Y  G Y+ +  L E A+  N   P+  + L    LK   V  AL+     V   P     
Sbjct: 16  YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75

Query: 87  WN-----------IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135
           +                    K   ++A    K+A ++      L      V   +G   
Sbjct: 76  YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135

Query: 136 QALEAVQMVLNITNN 150
           +A  +++  L + + 
Sbjct: 136 KAEASLKQALALEDT 150

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 45  LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAF 104
           +    P+ ++  G     A +  +++D+F +A+QLDPE  + W +         + +EA 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 105 IAFKEALKLKRNGW--QLWENYSHVALDVGNIGQALEAVQMVLNI 147
             +   + +  + +   +W   +     +       E  +    +
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 14/96 (14%)

Query: 27  YNRGEYETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL- 79
           Y+ G Y       E+      A+ L+      W   G A       E+A+D +   + + 
Sbjct: 17  YDAGNYT------ESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI 70

Query: 80  -DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
            D  N + W   A         +      +   KL+
Sbjct: 71  EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 22/102 (21%), Positives = 37/102 (36%)

Query: 26  AYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGE 85
                 +E +      A+ LN      +    AA  K  +   A+    RA+ +DP   +
Sbjct: 22  QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81

Query: 86  AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV 127
           A+  +       NK  EA   +K+AL+L  +      N    
Sbjct: 82  AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 14/106 (13%), Positives = 36/106 (33%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
               +S   +     G   +K  + E A+  + +A++L+P N   +   A  +       
Sbjct: 4   GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA 63

Query: 102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
            A    + A+ +     + +         +    +A+   +  L +
Sbjct: 64  GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           E A+ ++  Y   +  +G A        +A+  + +A++LDP+N    +    L + + K
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS---NLKIAELK 126

Query: 100 SKEA 103
            +EA
Sbjct: 127 LREA 130

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 15/132 (11%)

Query: 35  SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94
           S  + +AA+A           LG AA K +D EKA   + +A++LDP N   +N  A ++
Sbjct: 1   SNAMTDAAIAEK--------DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVY 52

Query: 95  MIKNKSKEAFIAFKEALKLKRNGWQLWENYS-------HVALDVGNIGQALEAVQMVLNI 147
             + K  E     ++A+++ R     ++  +       +      ++  A++     L+ 
Sbjct: 53  FEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112

Query: 148 TNNKRIDTELLE 159
             +  +  ++ E
Sbjct: 113 FRDPELVKKVKE 124

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
             + L  +AY + ++E + +  + A+ L+      +    A   + +   + +    +AV
Sbjct: 10  AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69

Query: 78  QLDPEN-------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
           ++  E         +A +        +N    A   F  +L   R+
Sbjct: 70  EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 14/68 (20%), Positives = 32/68 (47%)

Query: 49  YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFK 108
            P   +AL    LK  +  +AL +F   V+ DP+    +  +  L+   +++ +A   + 
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 109 EALKLKRN 116
           + +++ R 
Sbjct: 66  QGIEVARE 73

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 11/66 (16%), Positives = 26/66 (39%)

Query: 21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
          +LA+          +  L E  +  +  Y   ++ LG    +    + A+D + + +++ 
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 81 PENGEA 86
           E G  
Sbjct: 72 REEGTQ 77

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.5 bits (127), Expect = 9e-09
 Identities = 17/114 (14%), Positives = 44/114 (38%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
              G Y  + +L E     ++   D    LG A +K   V++  ++  R++   P+N + 
Sbjct: 19  AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV 78

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA 140
             ++   ++   K   A     +  +     + +         ++G   +A+++
Sbjct: 79  ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 10/105 (9%), Positives = 31/105 (29%)

Query: 43  MALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKE 102
           M  + +    +   G +  KA    +A+ +  +    D  + +    +   ++       
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 103 AFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
                + +L    +  ++        + V     A+  +  V   
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 22/90 (24%), Positives = 37/90 (41%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
               +Y+ +  L       N +  +  F LG A       ++A+D F  A+ L P  G+ 
Sbjct: 87  VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
              IA  +    + +EA   FK+A +L   
Sbjct: 147 HRAIAFSYEQMGRHEEALPHFKKANELDEG 176

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 42  AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII 90
           A+ L         A+  +  +    E+AL  F +A +LD        ++
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALV 184

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           YN G  Y       EA      A+ L+    + W+ LG A  K  D ++A++ + +A++L
Sbjct: 5   YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE 139
           DP + EAW  +   +  +    EA   +++AL+L     + W N  +     G+  +A+E
Sbjct: 65  DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124

Query: 140 AVQMVLNI 147
             Q  L +
Sbjct: 125 YYQKALEL 132

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 27  YNRGE-YETSKILREA------AMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL 79
           YN G  Y       EA      A+ L+    + W+ LG A  K  D ++A++ + +A++L
Sbjct: 39  YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98

Query: 80  DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
           DP + EAW  +   +  +    EA   +++AL+L 
Sbjct: 99  DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 51  DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA 110
           + W+ LG A  K  D ++A++ + +A++LDP + EAW  +   +  +    EA   +++A
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61

Query: 111 LKLK 114
           L+L 
Sbjct: 62  LELD 65

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 48.5 bits (117), Expect = 9e-08
 Identities = 25/88 (28%), Positives = 49/88 (55%)

Query: 27  YNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
           Y +G+Y+ +    + A+ L+    + W+ LG A  K  D ++A++ + +A++LDP N EA
Sbjct: 20  YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79

Query: 87  WNIIACLHMIKNKSKEAFIAFKEALKLK 114
           W  +   +  +    EA   +++AL+L 
Sbjct: 80  WYNLGNAYYKQGDYDEAIEYYQKALELD 107

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 49  YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFK 108
             + W+ LG A  K  D ++A++ + +A++LDP N EAW  +   +  +    EA   ++
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 109 EALKLK 114
           +AL+L 
Sbjct: 68  KALELD 73

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.4 bits (117), Expect = 3e-07
 Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 4/139 (2%)

Query: 4   AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK- 62
           A++ L +   +  + +    +        + ++   +     +        A    +L  
Sbjct: 120 ALRTLHQGDSLECMAM--TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA 177

Query: 63  -ARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW 121
               ++ A  +F              N  A  HM + + + A    +EAL       +  
Sbjct: 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237

Query: 122 ENYSHVALDVGNIGQALEA 140
            N   ++  +G   +    
Sbjct: 238 INLVVLSQHLGKPPEVTNR 256

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 18/134 (13%), Positives = 35/134 (26%), Gaps = 7/134 (5%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
           L   A   +     + +        +L               LK   ++ A     +   
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQGDSLEC-----MAMTVQILLKLDRLDLARKELKKMQD 158

Query: 79  LDPENGEAWNIIA--CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ 136
            D +        A   L     K ++A+  F+E          L    +   +  G    
Sbjct: 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEA 218

Query: 137 ALEAVQMVLNITNN 150
           A   +Q  L+  + 
Sbjct: 219 AEGVLQEALDKDSG 232

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 5/114 (4%)

Query: 4   AMKKLWKFQMISQLELRSLARSAY-----NRGEYETSKILREAAMALNSLYPDGWFALGA 58
           A K+L K Q   +    +   +A+        + + +  + +      S          A
Sbjct: 149 ARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208

Query: 59  AALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
             +     E A  V   A+  D  + E    +  L     K  E    +   LK
Sbjct: 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 55  ALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
            LG  A K +D + AL  + +A +LDP N       A ++  K    +     ++A+++ 
Sbjct: 9   ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68

Query: 115 RNGWQLWENYS-------HVALDVGNIGQALEAVQMVLNITNNKRIDTELLE 159
           R   + +   +       +          A+      L       +  +  +
Sbjct: 69  RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 4/137 (2%)

Query: 18  ELRSLARSAYNRGEY-ETSKILREAAMALNSLYPDGWFALGAAALK-ARDVEKALDVFTR 75
           ++    R+   R E  E +  L   A+ LN+     W           +D+ + ++  T 
Sbjct: 98  DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157

Query: 76  AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG 135
            ++  P+N + W+    L        +      + L      +  W++   V  +     
Sbjct: 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD 217

Query: 136 QALEAVQMVL--NITNN 150
             L+ V  +L  ++ NN
Sbjct: 218 NELQYVDQLLKEDVRNN 234

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 19/143 (13%), Positives = 52/143 (36%), Gaps = 8/143 (5%)

Query: 41  AAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA-CLHMIKNK 99
             +  +  + D +    A   +    E+A  +   A++L+  N   W+     L  ++  
Sbjct: 88  VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 147

Query: 100 SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI-------TNNKR 152
             E        ++ +   +Q+W +   +   + +  Q LE +  +LN          +++
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207

Query: 153 IDTELLERIVLNLEGRTSVIESD 175
              +  +     L+    +++ D
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKED 230

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 14/131 (10%), Positives = 37/131 (28%), Gaps = 7/131 (5%)

Query: 28  NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW 87
              +           +  ++     W        + +  +  L    + ++ D  N   W
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237

Query: 88  NIIACL------HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAV 141
           N    +      +  +   +       E +KL  +    W NY    L    + +    +
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW-NYLKGILQDRGLSKYPNLL 296

Query: 142 QMVLNITNNKR 152
             +L++  +  
Sbjct: 297 NQLLDLQPSHS 307

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 22/96 (22%), Positives = 41/96 (42%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           +L+S   +A  R EY  +  L   A+++    P       AA   +   EKA +    A 
Sbjct: 13  KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT 72

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113
            +DP+  +AW+ +          K A  A+++ ++ 
Sbjct: 73  VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
           E A  ++  Y   W  LG A     D + A + + + ++ +   G    +   L   K K
Sbjct: 69  ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA-MKRGLETTKRK 127

Query: 100 SKEA 103
            +EA
Sbjct: 128 IEEA 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 54/307 (17%), Positives = 100/307 (32%), Gaps = 83/307 (27%)

Query: 5   MKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK 62
           ++ L K   Q+      RS   S      +     LR   +  +  Y +    L    L 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYEN---CL----LV 249

Query: 63  ARDV--EKALDVF---------TRAVQL-DPENGEAWNIIACLHMI----KNKSKEAFIA 106
             +V   KA + F         TR  Q+ D  +      I+  H       ++ K   + 
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 107 F---------KEALK-----------LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
           +         +E L              R+G   W+N+ HV  D   +   +E+   VL 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLNVLE 367

Query: 147 ITNNKR-------------IDTELLERI-----------VLNLEGRTSVIESDSCRTTHN 182
               ++             I T LL  I           V+N   + S++E     +T +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 183 VNS-TNNTCAKDLHVESVHVSSLEGSIMGRSQENEHLME------FLWKI---LQQAAHV 232
           + S       K  +  ++H S ++   + ++ +++ L+       F   I   L+   H 
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 233 YMIIFFP 239
             +  F 
Sbjct: 488 ERMTLFR 494

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.9 bits (105), Expect = 2e-06
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 49  YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFK 108
             + W+ LG A  K  D ++A++ + +A++LDP N EAW  +   +  +    EA   ++
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 109 EALKLKRN 116
           +AL+L  N
Sbjct: 68  KALELDPN 75

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 12/112 (10%), Positives = 38/112 (33%), Gaps = 1/112 (0%)

Query: 3   PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK 62
           P        + +  +   S       +     ++I     +   +     +     +AL 
Sbjct: 230 PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289

Query: 63  ARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK 114
               +++       + L+  +   + ++  ++ +K  ++EA  A+  A  L+
Sbjct: 290 KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 63  ARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK----------EAFIAFKEALK 112
            + + +A ++    VQ  PE   A    A + ++++                I     L 
Sbjct: 212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271

Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQ 142
              N   +++  +  AL  G   ++ +A+ 
Sbjct: 272 ELNNLSIIYQIKAVSALVKGKTDESYQAIN 301

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 3/80 (3%)

Query: 40  EAAMALNSLYPD---GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI 96
           E A+A      D    +  LG+      +  KA  V    V+  P +       A +   
Sbjct: 14  EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 73

Query: 97  KNKSKEAFIAFKEALKLKRN 116
             + ++      + +    +
Sbjct: 74  LGRYEQGVELLLKIIAETSD 93

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 67  EKALDVFTRAVQL---DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123
            +A+  + +A+       +  E +  +        + ++A       +K   N   L   
Sbjct: 7   AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66

Query: 124 YSHVALDVGNIGQALEAVQMVLNITNN 150
           Y+ V  ++G   Q +E +  ++  T++
Sbjct: 67  YAMVLYNLGRYEQGVELLLKIIAETSD 93

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 17/97 (17%), Positives = 36/97 (37%)

Query: 17  LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
           L +++     + +G+Y  +      A+  N      +    A   K  + + AL      
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76

Query: 77  VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113
           +QL+P   + +   A          +A   +++AL L
Sbjct: 77  IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
           E  + L   +  G+    AA    +D  KA+DV+ +A+ LD    EA
Sbjct: 74  EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 23/96 (23%), Positives = 41/96 (42%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           EL+     A + G  + +      A+ L+      +    AA  K  D +KA +   + V
Sbjct: 6   ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113
            L P+ G+ ++  A      N+ +EA   ++E LK 
Sbjct: 66  DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 7/47 (14%), Positives = 16/47 (34%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
              + L   +  G+    AA       E+A   +   ++ +  N + 
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEAL 111
                   +   D+E AL      +Q +P    EA+ ++   +      ++A   ++ A+
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 112 KLK 114
           +L 
Sbjct: 63  ELN 65

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPD-GWFALGAAALKARDVEKALDVFTR 75
          ++     +   N+G+ E +    E  +    +  D  ++ +G A  K  D +KAL+ +  
Sbjct: 1  MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60

Query: 76 AVQLDPENGEAWN 88
          A++L+P++     
Sbjct: 61 AIELNPDSPALQA 73

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA-CLHMIKN 98
             A+ L+  Y  G++   A+ +       AL  +   V++ P + +A      C  ++K 
Sbjct: 71  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 130

Query: 99  KSKEAFIAFKEA 110
           K+ E  IA  E 
Sbjct: 131 KAFERAIAGDEH 142

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 58  AAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113
            A L+      AL   TRA++LD +  + +   A  +M   K + A   ++  +K+
Sbjct: 55  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/99 (20%), Positives = 37/99 (37%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           EL+      +   +Y  +      A+  N L    +       LK +  E+AL    RA+
Sbjct: 11  ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
           +LD ++ +A   +    +      EA    + A  L + 
Sbjct: 71  ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW--NIIACLHMIK 97
             A+ L+       F LG   L+    ++A+    RA  L  E    +  +I + L + K
Sbjct: 67  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126

Query: 98  NKSKEA 103
            K   +
Sbjct: 127 KKRWNS 132

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 20/99 (20%), Positives = 37/99 (37%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           EL+      +   +Y  +      A+  N L    +       LK +  E+AL    RA+
Sbjct: 6   ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
           +LD ++ +A   +    +      EA    + A  L + 
Sbjct: 66  ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/96 (14%), Positives = 30/96 (31%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           E R   +  + + ++  +       +        G+    AA  K     +A+    +A+
Sbjct: 6   EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 65

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113
           + DP    A+   A   +   +   A      A   
Sbjct: 66  EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 9/65 (13%), Positives = 21/65 (32%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK 99
             A+  +  +   +     A +  ++   AL+    A   D E     +      +    
Sbjct: 62  NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121

Query: 100 SKEAF 104
           S++ F
Sbjct: 122 SQQRF 126

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 29  RGEYETSKILREAAMALNSLYPD-GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW 87
           R +YE    +    +A+  + P   +      A +A  ++    +F +A +        +
Sbjct: 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171

Query: 88  NIIACLHMIKNKSKE-AFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN 146
              A +    +K K  AF  F+  LK   +  +    Y      +          + VL 
Sbjct: 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231

Query: 147 ITNNKRIDTELLERIVLNLE 166
             +     +  +    L  E
Sbjct: 232 SGSLPPEKSGEIWARFLAFE 251

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 19/136 (13%)

Query: 18  ELRSLARSA-----YNRGEYETSKILREAAMALNSLYPDGWFA------LGAAALKARDV 66
            + SL+ SA        G         +      S    G          G     A D 
Sbjct: 5   SMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDC 64

Query: 67  EKALDVFTRAVQLDPEN----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWE 122
              +  F  A+Q   E+       ++ +   +       +A    K  L L ++      
Sbjct: 65  RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM----N 120

Query: 123 NYSHVALDVGNIGQAL 138
           +    A   GN+G  L
Sbjct: 121 DRLGEAKSSGNLGNTL 136

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 40  EAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA 86
           +  + L+S +  G+    A  +  R+  KA   +  A+Q+DP N EA
Sbjct: 71  DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 12/56 (21%), Positives = 28/56 (50%)

Query: 58  AAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL 113
           A   K  + ++ALD     ++LD +  + +   A   +   +  +A  A+++AL++
Sbjct: 55  ACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 17/156 (10%), Positives = 44/156 (28%), Gaps = 35/156 (22%)

Query: 19  LRSLARSAYNRGEYETS--------KILREA------AMALNSLYPDGWFALGAAALKAR 64
              L         ++ +        +  +++        AL+ +        G     A 
Sbjct: 29  RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV--------GMVERMAG 80

Query: 65  DVEKALDVFTRAVQLDPENGE-------AWNIIACLHMIKNKSKEAFIAFKEALKLKRN- 116
           + + A   F    +L     E           +A + +       A   ++++L   +  
Sbjct: 81  NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140

Query: 117 GWQLWENYSH-----VALDVGNIGQALEAVQMVLNI 147
             Q+    +      +A    N+ +A +      +I
Sbjct: 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 21/128 (16%)

Query: 32  YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG------E 85
           Y  +     AAMAL+              ++  D+ KA+ ++ +A  +           E
Sbjct: 106 YVENGTPDTAAMALDRA---------GKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAE 156

Query: 86  AWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALE 139
                + L + + K  EA  + ++   + +        ++       V L   +   A +
Sbjct: 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216

Query: 140 AVQMVLNI 147
            V+   +I
Sbjct: 217 CVRESYSI 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.95
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.93
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.93
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.93
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.91
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.91
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.91
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.9
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.9
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.9
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.89
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.89
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.89
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.89
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.88
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.88
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.88
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.88
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.87
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.87
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.86
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.86
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.86
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.86
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.86
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.85
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.85
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.84
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.83
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.82
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.82
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.82
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.82
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.81
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.81
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.81
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.8
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.8
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.8
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.8
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.8
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.79
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.79
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.78
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.78
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.77
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.77
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.77
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.77
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.77
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.76
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.76
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.76
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.76
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.76
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.75
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.75
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.75
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.75
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.75
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.75
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.75
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.74
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.74
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.74
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.73
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.73
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.73
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.73
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.72
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.72
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.72
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.72
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.71
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.71
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.71
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.71
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.71
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.7
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.69
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.69
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.69
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.69
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.68
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.68
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.68
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.67
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.66
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.65
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.65
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.65
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.65
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.65
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.64
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.64
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.63
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.61
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.6
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.59
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.57
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.56
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.55
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.54
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.53
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.53
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.52
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.52
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.52
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.51
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.51
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.5
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.5
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.49
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.49
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.48
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.47
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.42
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.42
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.38
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.38
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.37
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.35
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.35
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.35
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.34
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.34
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.32
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.31
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.31
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.29
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.29
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.24
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.23
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.19
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.15
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.14
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.11
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.04
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.03
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.03
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.99
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.96
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.96
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.96
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.9
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.86
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.85
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.85
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.66
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.64
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.64
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.57
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.55
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.47
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.18
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.04
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.04
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.03
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.02
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.01
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.93
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.77
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.37
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.11
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.09
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.04
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.95
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.88
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.84
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.79
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.76
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.74
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.69
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.63
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.46
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.43
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.19
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	96.19
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.19
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.16
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.96
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.93
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.79
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.43
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.24
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.87
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.69
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.69
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.8
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	89.87
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.25
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	86.82
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.48
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	84.86
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	84.84
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	83.91
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	82.51
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	82.5
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	81.14

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=3e-26  Score=170.24  Aligned_cols=161  Identities=17%  Similarity=0.160  Sum_probs=153.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc-----------cCHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA-----------RDVEKA   69 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A   69 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...           |++++|
T Consensus        24 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A  103 (217)
T 2pl2_A           24 ALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA  103 (217)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999           999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 039523           70 LDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus        70 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  149 (244)
                      +..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|
T Consensus       104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P  182 (217)
T 2pl2_A          104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP  182 (217)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             CchhhHHHHHHHH
Q 039523          150 NKRIDTELLERIV  162 (244)
Q Consensus       150 ~~~~~~~~l~~~~  162 (244)
                      +++.....+..+.
T Consensus       183 ~~~~~~~~la~~~  195 (217)
T 2pl2_A          183 KDLDLRVRYASAL  195 (217)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHH
Confidence            9776655555443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.95  E-value=8.1e-26  Score=163.34  Aligned_cols=151  Identities=16%  Similarity=0.205  Sum_probs=144.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...++++.|...+.+++..+
T Consensus        24 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  103 (184)
T 3vtx_A           24 AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN  103 (184)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      |.++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+.+|+++++++|++
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          104 TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.93  E-value=1.3e-24  Score=174.03  Aligned_cols=164  Identities=10%  Similarity=0.067  Sum_probs=148.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGE-YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      |+.+|+++++++|++..+|..+|.++...|+ +++|+..|++++..+|++..+|+.+|.++...|++++|+.+|++++.+
T Consensus       116 Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l  195 (382)
T 2h6f_A          116 AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ  195 (382)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            5788999999999999999999999999996 999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhcCCchh
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD-VGNIGQA-----LEAVQMVLNITNNKRI  153 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~  153 (244)
                      +|++..+|+++|.++...|++++|+.+|+++++++|++..+|+++|.++.. .|..++|     +.+|+++++++|++..
T Consensus       196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~  275 (382)
T 2h6f_A          196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES  275 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence            999999999999999999999999999999999999999999999999999 5554777     5899999999999877


Q ss_pred             hHHHHHHHHHH
Q 039523          154 DTELLERIVLN  164 (244)
Q Consensus       154 ~~~~l~~~~~~  164 (244)
                      .+..+..+...
T Consensus       276 a~~~l~~ll~~  286 (382)
T 2h6f_A          276 AWNYLKGILQD  286 (382)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHc
Confidence            66666655543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.93  E-value=1.9e-24  Score=161.42  Aligned_cols=161  Identities=11%  Similarity=0.091  Sum_probs=129.0

Q ss_pred             CchHHHHHHhhcc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            1 MMPAMKKLWKFQM-ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         1 Ai~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      |+..|+++++.+| .+..+++.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.
T Consensus        26 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  105 (228)
T 4i17_A           26 AFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA  105 (228)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            4677888888877 777888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCcH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCH----------------
Q 039523           80 DPENG-------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNI----------------  134 (244)
Q Consensus        80 ~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~----------------  134 (244)
                      +|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.++..+|.++...|+.                
T Consensus       106 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~  185 (228)
T 4i17_A          106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKY  185 (228)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence            88877       55788888888888888888888888888888  778888888888877777                


Q ss_pred             -----------HHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523          135 -----------GQALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus       135 -----------~~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                                 ++|+.+++++++++|++......+..+
T Consensus       186 ~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          186 ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence                       778888888888888866555555444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.93  E-value=1.4e-24  Score=186.20  Aligned_cols=150  Identities=21%  Similarity=0.282  Sum_probs=111.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|++|++++|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++...|++++|++.|+++++++
T Consensus        28 Ai~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~  107 (723)
T 4gyw_A           28 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN  107 (723)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      |+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|.+.+++++++.|+
T Consensus       108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            7777777777777777777777777777777777777777777777777777777777777777766543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.93  E-value=5.1e-24  Score=182.69  Aligned_cols=156  Identities=15%  Similarity=0.155  Sum_probs=146.8

Q ss_pred             hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523           11 FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII   90 (244)
Q Consensus        11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l   90 (244)
                      ..|+++.++.++|.++..+|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++++|+++.+++++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523           91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus        91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      |.++..+|++++|++.|+++++++|++..++.++|.++..+|++++|+.+|+++++++|+.......+........
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC  159 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999997776666665554443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=3.2e-23  Score=153.87  Aligned_cols=152  Identities=18%  Similarity=0.167  Sum_probs=141.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC   92 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~   92 (244)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523           93 LHMIK-----------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus        93 ~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                      ++...           |++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++ +++.....+...
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            99999           999999999999999999999999999999999999999999999999999 766555555554


Q ss_pred             HHHh
Q 039523          162 VLNL  165 (244)
Q Consensus       162 ~~~~  165 (244)
                      ....
T Consensus       161 ~~~~  164 (217)
T 2pl2_A          161 YLSM  164 (217)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            4333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.92  E-value=1.1e-22  Score=146.72  Aligned_cols=153  Identities=13%  Similarity=0.155  Sum_probs=144.1

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL   93 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   93 (244)
                      +++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523           94 HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus        94 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      +...++++.|...+.+++...|++..++..+|.++...|++++|+..|+++++++|+++..+..++.......
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g  155 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG  155 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999999999999999999998776666665554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.91  E-value=1.3e-24  Score=152.07  Aligned_cols=143  Identities=9%  Similarity=0.073  Sum_probs=122.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKS  100 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  100 (244)
                      .||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+++|+++++++|+++.+|..+|.++...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            46788888899999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhcCCchhhHHHHHHHHH
Q 039523          101 KEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEA-VQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       101 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      ++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++........+..
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998876655 58999999998776665555543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.91  E-value=2.6e-23  Score=171.50  Aligned_cols=162  Identities=17%  Similarity=0.150  Sum_probs=153.0

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc---------cCHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA---------RDVEKALD   71 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~   71 (244)
                      |+.+|+++++.+|+++.+|..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++...         |++++|+.
T Consensus       122 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~  200 (474)
T 4abn_A          122 AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR  200 (474)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHH
Confidence            578999999999999999999999999999999999999999999998 79999999999999         99999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 039523           72 VFTRAVQLDPENGEAWNIIACLHMIK--------NKSKEAFIAFKEALKLKR---NGWQLWENYSHVALDVGNIGQALEA  140 (244)
Q Consensus        72 ~~~~a~~~~p~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~  140 (244)
                      .|+++++.+|+++.+|+.+|.++...        |++++|+..|+++++++|   +++.++.++|.++...|++++|+.+
T Consensus       201 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~  280 (474)
T 4abn_A          201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG  280 (474)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999        999999999999999999   9999999999999999999999999


Q ss_pred             HHHHHhhcCCchhhHHHHHHHHH
Q 039523          141 VQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       141 ~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      |+++++++|++...+..+..+..
T Consensus       281 ~~~al~l~p~~~~a~~~l~~~~~  303 (474)
T 4abn_A          281 FSQAAALDPAWPEPQQREQQLLE  303 (474)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999997765555544433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.91  E-value=2.3e-23  Score=141.34  Aligned_cols=122  Identities=16%  Similarity=0.124  Sum_probs=112.8

Q ss_pred             HHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHH
Q 039523            7 KLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEA   86 (244)
Q Consensus         7 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~   86 (244)
                      ++..++|+.+..+..+|..++..|+|++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            45567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      |+.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999888764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.91  E-value=1.7e-23  Score=167.51  Aligned_cols=157  Identities=11%  Similarity=0.102  Sum_probs=149.9

Q ss_pred             HHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCcHHH
Q 039523            8 LWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARD-VEKALDVFTRAVQLDPENGEA   86 (244)
Q Consensus         8 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~   86 (244)
                      ++..+|++..++..+|.++...|++++|+..+++++.++|++..+|..+|.++...|+ +++|+.+|++++.++|++..+
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            3556889999999999999999999999999999999999999999999999999997 999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN  164 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  164 (244)
                      |+++|.++..+|++++|+..|+++++++|++..+|.++|.++...|++++|+.+|+++++++|++...+..+..+...
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988777777766655

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.91  E-value=1.2e-23  Score=147.25  Aligned_cols=133  Identities=16%  Similarity=0.124  Sum_probs=126.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |++.+++++..+|+++..++.+|.+|+..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++
T Consensus        16 ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~   95 (150)
T 4ga2_A           16 YIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN   95 (150)
T ss_dssp             HHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence            46788889889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIA-FKEALKLKRNGWQLWENYSHVALDVGN  133 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~-~~~a~~~~p~~~~~~~~la~~~~~~~~  133 (244)
                      |+++.+++.+|.++...|++++|... ++++++++|+++.++...+.++...|+
T Consensus        96 p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           96 PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999887765 599999999999999999999988885

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.91  E-value=2.5e-22  Score=161.25  Aligned_cols=162  Identities=16%  Similarity=0.130  Sum_probs=126.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+
T Consensus       188 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  267 (388)
T 1w3b_A          188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ  267 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            45677888888888888888888888888888888888888888888778888888888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |+++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++++..|+.......+..
T Consensus       268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  347 (388)
T 1w3b_A          268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888777776554444444


Q ss_pred             HH
Q 039523          161 IV  162 (244)
Q Consensus       161 ~~  162 (244)
                      ..
T Consensus       348 ~~  349 (388)
T 1w3b_A          348 VL  349 (388)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.90  E-value=1e-21  Score=147.36  Aligned_cols=163  Identities=15%  Similarity=0.157  Sum_probs=150.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+
T Consensus        42 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  121 (243)
T 2q7f_A           42 AAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG  121 (243)
T ss_dssp             CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |.++.++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..++++++..|+.......+..
T Consensus       122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  201 (243)
T 2q7f_A          122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV  201 (243)
T ss_dssp             CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987655555554


Q ss_pred             HHH
Q 039523          161 IVL  163 (244)
Q Consensus       161 ~~~  163 (244)
                      ...
T Consensus       202 ~~~  204 (243)
T 2q7f_A          202 TYA  204 (243)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.90  E-value=3.7e-22  Score=149.80  Aligned_cols=161  Identities=16%  Similarity=0.130  Sum_probs=153.0

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..
T Consensus        76 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  155 (243)
T 2q7f_A           76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN  155 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |.++.++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|..+++++++.+|++......+..
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  235 (243)
T 2q7f_A          156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL  235 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997766555544


Q ss_pred             H
Q 039523          161 I  161 (244)
Q Consensus       161 ~  161 (244)
                      +
T Consensus       236 l  236 (243)
T 2q7f_A          236 L  236 (243)
T ss_dssp             -
T ss_pred             H
Confidence            3

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.90  E-value=6.7e-23  Score=151.12  Aligned_cols=151  Identities=11%  Similarity=0.041  Sum_probs=134.9

Q ss_pred             CchHHHHHHhhccCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc
Q 039523            1 MMPAMKKLWKFQMISQLELRS----------------LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR   64 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   64 (244)
                      |+.+|+++++.+|+++.+++.                +|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus        23 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  102 (208)
T 3urz_A           23 AVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG  102 (208)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence            578999999999999999999                9999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039523           65 DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNK--SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ  142 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  142 (244)
                      ++++|+.+|+++++++|+++.+++.+|.++...|+  ...+...+.+++...|. ...++..|.++...|++++|+.+|+
T Consensus       103 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~  181 (208)
T 3urz_A          103 QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQ  181 (208)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHH
Confidence            99999999999999999999999999999977764  45667777777654432 3467889999999999999999999


Q ss_pred             HHHhhcCCch
Q 039523          143 MVLNITNNKR  152 (244)
Q Consensus       143 ~al~~~p~~~  152 (244)
                      ++++++|+..
T Consensus       182 ~al~l~P~~~  191 (208)
T 3urz_A          182 KVILRFPSTE  191 (208)
T ss_dssp             HHTTTSCCHH
T ss_pred             HHHHhCCCHH
Confidence            9999999843

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.90  E-value=6.8e-22  Score=157.40  Aligned_cols=166  Identities=14%  Similarity=0.143  Sum_probs=144.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+
T Consensus        84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  163 (365)
T 4eqf_A           84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN  163 (365)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999999999999999999999999999999999999988888888888777655


Q ss_pred             C--------------------------------------------C--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523           81 P--------------------------------------------E--NGEAWNIIACLHMIKNKSKEAFIAFKEALKLK  114 (244)
Q Consensus        81 p--------------------------------------------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  114 (244)
                      |                                            .  ++.++..+|.++...|++++|+..++++++..
T Consensus       164 p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  243 (365)
T 4eqf_A          164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR  243 (365)
T ss_dssp             HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4                                            3  77888999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      |+++.+|..+|.++...|++++|+.+|++++++.|+.......+........
T Consensus       244 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          244 PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999987666665555544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=2.5e-21  Score=146.27  Aligned_cols=163  Identities=16%  Similarity=0.075  Sum_probs=151.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh--
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ--   78 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--   78 (244)
                      |+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|++++++++.  
T Consensus        56 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  135 (252)
T 2ho1_A           56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT  135 (252)
T ss_dssp             GHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc
Confidence            578899999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523           79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                      ..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|..+++++++..|+.......+
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  215 (252)
T 2ho1_A          136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG  215 (252)
T ss_dssp             TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999866555544


Q ss_pred             HHHHH
Q 039523          159 ERIVL  163 (244)
Q Consensus       159 ~~~~~  163 (244)
                      ..+..
T Consensus       216 ~~~~~  220 (252)
T 2ho1_A          216 IRLAK  220 (252)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.90  E-value=4.3e-22  Score=143.03  Aligned_cols=153  Identities=14%  Similarity=0.106  Sum_probs=139.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|.+.+++++..+
T Consensus        27 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           27 AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45677777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                      |.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|..+++++++..|+...
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999998887554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.90  E-value=2.2e-21  Score=143.63  Aligned_cols=160  Identities=11%  Similarity=-0.053  Sum_probs=147.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc-cCHHHHHHHHHHHHh-
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA-RDVEKALDVFTRAVQ-   78 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~-   78 (244)
                      |+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++... |++++|+..++++++ 
T Consensus        27 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (225)
T 2vq2_A           27 ATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD  106 (225)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999999999999999999999999999999999 999999999999999 


Q ss_pred             -cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CchhhHH
Q 039523           79 -LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITN-NKRIDTE  156 (244)
Q Consensus        79 -~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~  156 (244)
                       ..|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|...++++++..| +......
T Consensus       107 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  186 (225)
T 2vq2_A          107 PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL  186 (225)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence             66777899999999999999999999999999999999999999999999999999999999999999999 7655444


Q ss_pred             HHHH
Q 039523          157 LLER  160 (244)
Q Consensus       157 ~l~~  160 (244)
                      .+..
T Consensus       187 ~~~~  190 (225)
T 2vq2_A          187 LGWK  190 (225)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.90  E-value=7.3e-22  Score=158.54  Aligned_cols=163  Identities=18%  Similarity=0.200  Sum_probs=154.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+.+++..+
T Consensus       154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  233 (388)
T 1w3b_A          154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS  233 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++...+..+..
T Consensus       234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  313 (388)
T 1w3b_A          234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997766655555


Q ss_pred             HHH
Q 039523          161 IVL  163 (244)
Q Consensus       161 ~~~  163 (244)
                      +..
T Consensus       314 ~~~  316 (388)
T 1w3b_A          314 IKR  316 (388)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.90  E-value=1.4e-21  Score=145.78  Aligned_cols=152  Identities=16%  Similarity=0.108  Sum_probs=141.2

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNS-LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII   90 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l   90 (244)
                      .+.++..++.+|.+++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..++++++.+|+++.++..+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            356789999999999999999999999999999998 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--chhhHHHHHHH
Q 039523           91 ACLHMIKNKSKEAFIAFKEALKLKRNGW-------QLWENYSHVALDVGNIGQALEAVQMVLNITNN--KRIDTELLERI  161 (244)
Q Consensus        91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~  161 (244)
                      |.++..+|++++|+..++++++.+|+++       .++..+|.++...|++++|+.+|+++++++|+  ....+..++..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            9999999999999999999999999998       66999999999999999999999999999998  66665555554


Q ss_pred             HH
Q 039523          162 VL  163 (244)
Q Consensus       162 ~~  163 (244)
                      ..
T Consensus       163 ~~  164 (228)
T 4i17_A          163 FY  164 (228)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.7e-22  Score=149.14  Aligned_cols=148  Identities=11%  Similarity=0.104  Sum_probs=141.8

Q ss_pred             CchHHHHHHhhccCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------------hCC
Q 039523            1 MMPAMKKLWKFQMIS-------QLELRSLARSAYNRGEYETSKILREAAMA--------------------------LNS   47 (244)
Q Consensus         1 Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------------------~~p   47 (244)
                      |+..|+++++.+|++       +.++..+|.++...|++++|+..+++++.                          .+|
T Consensus        57 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  136 (258)
T 3uq3_A           57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP  136 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCc
Confidence            567899999999887       79999999999999999999999999999                          666


Q ss_pred             CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523           48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV  127 (244)
Q Consensus        48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~  127 (244)
                      .++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  216 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA  216 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhc
Q 039523          128 ALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       128 ~~~~~~~~~A~~~~~~al~~~  148 (244)
                      +...|++++|+.++++++++.
T Consensus       217 ~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          217 QIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999999999

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.89  E-value=6e-22  Score=150.87  Aligned_cols=154  Identities=14%  Similarity=0.125  Sum_probs=121.1

Q ss_pred             CchHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHH--------ccCH
Q 039523            1 MMPAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALK--------ARDV   66 (244)
Q Consensus         1 Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~--------~g~~   66 (244)
                      |+..|+++++.+|++   +.+++.+|.+++..|++++|+..|+++++..|++   +.+++.+|.++..        .|++
T Consensus        34 A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~  113 (261)
T 3qky_A           34 AIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDT  113 (261)
T ss_dssp             HHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHH
T ss_pred             HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhH
Confidence            467778888888877   7888888888888888888888888888887754   4577788888888        8888


Q ss_pred             HHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 039523           67 EKALDVFTRAVQLDPENGEAW-----------------NIIACLHMIKNKSKEAFIAFKEALKLKRN---GWQLWENYSH  126 (244)
Q Consensus        67 ~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~la~  126 (244)
                      ++|+..|++++..+|+++.+.                 +.+|.++...|++++|+..|++++...|+   .+.+++.+|.
T Consensus       114 ~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~  193 (261)
T 3qky_A          114 RKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMR  193 (261)
T ss_dssp             HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            888888888888888776555                 77788888888888888888888888777   4567888888


Q ss_pred             HHHHc----------CCHHHHHHHHHHHHhhcCCchhh
Q 039523          127 VALDV----------GNIGQALEAVQMVLNITNNKRID  154 (244)
Q Consensus       127 ~~~~~----------~~~~~A~~~~~~al~~~p~~~~~  154 (244)
                      ++..+          |++++|+..|+++++..|+++..
T Consensus       194 ~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          194 AYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            88766          77788888888888888876543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.89  E-value=1.9e-21  Score=154.88  Aligned_cols=150  Identities=20%  Similarity=0.231  Sum_probs=139.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------------------------------
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS---------------------------------   47 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------------------------------   47 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|                                 
T Consensus       118 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  197 (365)
T 4eqf_A          118 AIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK  197 (365)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHH
Confidence            56788999999999999999999999999988888888887776544                                 


Q ss_pred             -----------C--ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523           48 -----------L--YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK  114 (244)
Q Consensus        48 -----------~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  114 (244)
                                 .  ++.++..+|.++...|++++|+.+++++++.+|+++.+|..+|.++...|++++|+..|+++++.+
T Consensus       198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence                       3  678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      |+++.++..+|.++...|++++|+.+|++++++.|+
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999999999987

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.89  E-value=9e-23  Score=142.42  Aligned_cols=118  Identities=17%  Similarity=0.113  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523           35 SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK  114 (244)
Q Consensus        35 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  114 (244)
                      +-..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++...|++++|+.+|++++.++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            33456677777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523          115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus       115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      |+++.+++++|.++..+|++++|+.+|++++++.|+.+
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            88888888888888888888888888888888887754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.89  E-value=2e-22  Score=172.94  Aligned_cols=159  Identities=9%  Similarity=-0.052  Sum_probs=150.0

Q ss_pred             CchHHHHHH--------hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHH
Q 039523            1 MMPAMKKLW--------KFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDV   72 (244)
Q Consensus         1 Ai~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~   72 (244)
                      |++.|++++        +.+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..
T Consensus       410 A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  489 (681)
T 2pzi_A          410 TLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKH  489 (681)
T ss_dssp             HHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            567889999        889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           73 FTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        73 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      |+++++.+|+++.+++++|.++...|++++ +..|+++++++|++..+++++|.++...|++++|+..|+++++++|++.
T Consensus       490 ~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  568 (681)
T 2pzi_A          490 FTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT  568 (681)
T ss_dssp             HHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence            999999999999999999999999999999 9999999999999999999999999999999999999999999999965


Q ss_pred             hhHHHHHH
Q 039523          153 IDTELLER  160 (244)
Q Consensus       153 ~~~~~l~~  160 (244)
                      .....+..
T Consensus       569 ~a~~~~~~  576 (681)
T 2pzi_A          569 TARLTSAV  576 (681)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.89  E-value=4.6e-21  Score=146.40  Aligned_cols=169  Identities=13%  Similarity=0.048  Sum_probs=133.9

Q ss_pred             CchHHHHHHhh----ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKF----QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      |+..|+++++.    +|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+++++
T Consensus        24 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  103 (275)
T 1xnf_A           24 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV  103 (275)
T ss_dssp             HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            45677788776    45677888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH--------------------------------------
Q 039523           77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW--------------------------------------  118 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~--------------------------------------  118 (244)
                      ++.+|.++.++..+|.++...|++++|+..++++++..|++.                                      
T Consensus       104 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  183 (275)
T 1xnf_A          104 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI  183 (275)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH
T ss_pred             HhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHH
Confidence            888888888888888888888888888888888888777654                                      


Q ss_pred             --------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          119 --------------------------------QLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       119 --------------------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                                                      .++..+|.++...|++++|+.+|++++..+|++...........+.+.
T Consensus       184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~  263 (275)
T 1xnf_A          184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG  263 (275)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence                                            556777888888888888888888888888876555544444455555


Q ss_pred             ccc
Q 039523          167 GRT  169 (244)
Q Consensus       167 ~~~  169 (244)
                      ++.
T Consensus       264 ~a~  266 (275)
T 1xnf_A          264 QDQ  266 (275)
T ss_dssp             HC-
T ss_pred             hhH
Confidence            443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.5e-21  Score=146.30  Aligned_cols=165  Identities=16%  Similarity=0.217  Sum_probs=151.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------hhHHHHHHHHHHHccCHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY-------PDGWFALGAAALKARDVEKALDVF   73 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~   73 (244)
                      |+.+|+++++.+ .++.++..+|.++...|++++|+..+++++..+|.+       +.++..+|.++...|++++|+..+
T Consensus        24 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  102 (258)
T 3uq3_A           24 AIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY  102 (258)
T ss_dssp             HHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            578899999999 999999999999999999999999999999998876       689999999999999999999999


Q ss_pred             HHHHh--------------------------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523           74 TRAVQ--------------------------LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV  127 (244)
Q Consensus        74 ~~a~~--------------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~  127 (244)
                      ++++.                          .+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus       103 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  182 (258)
T 3uq3_A          103 QKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA  182 (258)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            99999                          6777888999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          128 ALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       128 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      +...|++++|+.+++++++..|+.......+........
T Consensus       183 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  221 (258)
T 3uq3_A          183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK  221 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999997766655555544433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=4.6e-21  Score=149.96  Aligned_cols=147  Identities=18%  Similarity=0.116  Sum_probs=87.5

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      +..++++++.+|+++.++..+|.++...| ++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  155 (330)
T 3hym_B           76 FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM  155 (330)
T ss_dssp             HHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence            44555555556666666666666666666 56666666666666666555566666666666666666666666666655


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      |++..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.+++++++..
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  223 (330)
T 3hym_B          156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI  223 (330)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence            55555555556666566666666666666655555555555555555555555555555555555554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.88  E-value=1.2e-21  Score=132.91  Aligned_cols=121  Identities=15%  Similarity=0.097  Sum_probs=112.2

Q ss_pred             HHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523           41 AAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL  120 (244)
Q Consensus        41 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  120 (244)
                      ++..++|+.+.++..+|..+++.|++++|++.|+++++.+|.++.+|.++|.++..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523          121 WENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus       121 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                      |+.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999999999999987766655543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.88  E-value=5.4e-22  Score=138.49  Aligned_cols=115  Identities=14%  Similarity=0.090  Sum_probs=111.6

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      .++++++++|+++.+++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW  118 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  118 (244)
                      +.+|+++|.++..+|++++|+..|++++++.|+..
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.88  E-value=2.9e-21  Score=147.48  Aligned_cols=164  Identities=13%  Similarity=0.064  Sum_probs=147.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHccCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD----GWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.++.    ++..+|.++...|++++|++.++++
T Consensus        22 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  100 (272)
T 3u4t_A           22 AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA  100 (272)
T ss_dssp             HHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999 444443    4899999999999999999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523           77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      ++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|......+++++|+.+++++++..|+......
T Consensus       101 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  180 (272)
T 3u4t_A          101 VDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL  180 (272)
T ss_dssp             HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            99999999999999999999999999999999999999999999999995555567999999999999999999766555


Q ss_pred             HHHHHHHHh
Q 039523          157 LLERIVLNL  165 (244)
Q Consensus       157 ~l~~~~~~~  165 (244)
                      .+.......
T Consensus       181 ~~~~~~~~~  189 (272)
T 3u4t_A          181 WRARANAAQ  189 (272)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            555554444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.88  E-value=3.5e-21  Score=162.25  Aligned_cols=152  Identities=11%  Similarity=0.059  Sum_probs=136.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++.+
T Consensus         8 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A            8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             -------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhcCCch
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV---GNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~  152 (244)
                      |+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...   |++++|...++++++.+|+..
T Consensus        88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A           88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence            999999999999999999999999999999999999999999999999999   999999999999999999843

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.88  E-value=1.8e-20  Score=149.00  Aligned_cols=165  Identities=12%  Similarity=0.108  Sum_probs=143.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+
T Consensus        83 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  162 (368)
T 1fch_A           83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT  162 (368)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999999999999999999999999999999999999988888888877776655


Q ss_pred             C-------------------------------------------------C--cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523           81 P-------------------------------------------------E--NGEAWNIIACLHMIKNKSKEAFIAFKE  109 (244)
Q Consensus        81 p-------------------------------------------------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~  109 (244)
                      |                                                 .  ++.++..+|.++...|++++|+..+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  242 (368)
T 1fch_A          163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA  242 (368)
T ss_dssp             TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4                                                 4  577888999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523          110 ALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus       110 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      ++...|+++.++..+|.++...|++++|+.++++++++.|+.......+.......
T Consensus       243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999998766555555544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.88  E-value=1.1e-20  Score=142.65  Aligned_cols=156  Identities=12%  Similarity=-0.018  Sum_probs=149.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMA--LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |+..|+++++.+|.++.++..+|.++...|++++|+..+++++.  ..|.+..++..+|.++...|++++|+..++++++
T Consensus        90 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A           90 ADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999999999  8888899999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523           79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      .+|.++.++..+|.++...|++++|+..+++++...|++...+..++.++...|++++|..+++++++..|+++....
T Consensus       170 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  247 (252)
T 2ho1_A          170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE  247 (252)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999765443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=1.4e-20  Score=148.70  Aligned_cols=164  Identities=13%  Similarity=0.087  Sum_probs=147.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+
T Consensus        22 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  101 (359)
T 3ieg_A           22 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN  101 (359)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C---CcHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           81 P---ENGEAWNII------------ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        81 p---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      |   +++.++..+            |.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++
T Consensus       102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  181 (359)
T 3ieg_A          102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS  181 (359)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9   888888777            6889999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCchhhHHHHHHHHHH
Q 039523          146 NITNNKRIDTELLERIVLN  164 (244)
Q Consensus       146 ~~~p~~~~~~~~l~~~~~~  164 (244)
                      +..|+.+.....+......
T Consensus       182 ~~~~~~~~~~~~la~~~~~  200 (359)
T 3ieg_A          182 KLKSDNTEAFYKISTLYYQ  200 (359)
T ss_dssp             TTCSCCHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHH
Confidence            9999876655555544433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.6e-20  Score=146.93  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=153.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhc
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQL   79 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~   79 (244)
                      |+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+.++++++..
T Consensus        41 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~  120 (330)
T 3hym_B           41 CYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL  120 (330)
T ss_dssp             HHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            5788999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      +|.++.+|..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+.+++++++..|++......+.
T Consensus       121 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  200 (330)
T 3hym_B          121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG  200 (330)
T ss_dssp             CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999765555554


Q ss_pred             HHHH
Q 039523          160 RIVL  163 (244)
Q Consensus       160 ~~~~  163 (244)
                      ....
T Consensus       201 ~~~~  204 (330)
T 3hym_B          201 VVAF  204 (330)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=2.2e-20  Score=147.47  Aligned_cols=161  Identities=14%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHH------------HHHHHHHHccCHHHHH
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWF------------ALGAAALKARDVEKAL   70 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~   70 (244)
                      ..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++.            .+|.++...|++++|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  254 (359)
T 3ieg_A          175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT  254 (359)
T ss_dssp             HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3444444444444444444444444444444444444444444444443322            1244444444444444


Q ss_pred             HHHHHHHhcCCCcHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           71 DVFTRAVQLDPENGE----AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        71 ~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      ..+++++...|+++.    ++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|..+|+++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  334 (359)
T 3ieg_A          255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE  334 (359)
T ss_dssp             HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            444444444444442    2334555566666666666666666666666666666666666666666666666666666


Q ss_pred             hcCCchhhHHHHHHHHH
Q 039523          147 ITNNKRIDTELLERIVL  163 (244)
Q Consensus       147 ~~p~~~~~~~~l~~~~~  163 (244)
                      ++|++......+.....
T Consensus       335 ~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          335 HNENDQQIREGLEKAQR  351 (359)
T ss_dssp             TCTTCHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHH
Confidence            66655544444444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.88  E-value=2e-20  Score=148.69  Aligned_cols=151  Identities=23%  Similarity=0.262  Sum_probs=141.3

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---------------------------------
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS---------------------------------   47 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------------------------------   47 (244)
                      |+.+|+++++.+|+++.++..+|.++...|++++|+..+++++...|                                 
T Consensus       117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (368)
T 1fch_A          117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL  196 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence            56789999999999999999999999999999888888887766554                                 


Q ss_pred             ----------------C--ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523           48 ----------------L--YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKE  109 (244)
Q Consensus        48 ----------------~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  109 (244)
                                      .  ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++
T Consensus       197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  276 (368)
T 1fch_A          197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR  276 (368)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                            3  5678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523          110 ALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus       110 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      ++...|+++.++..+|.++...|++++|+.+|++++++.|+.
T Consensus       277 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999986

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.87  E-value=3.7e-21  Score=158.65  Aligned_cols=164  Identities=15%  Similarity=0.112  Sum_probs=150.4

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEY-ETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      +..++++....|.++.+++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++.+
T Consensus        88 l~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  167 (474)
T 4abn_A           88 LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC  167 (474)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3456666677899999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 039523           81 PENGEAWNIIACLHMIK---------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV--------GNIGQALEAVQM  143 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~  143 (244)
                      |+ ..++..+|.++...         |++++|+..|+++++++|+++.+|..+|.++...        |++++|+.+|++
T Consensus       168 p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~  246 (474)
T 4abn_A          168 KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ  246 (474)
T ss_dssp             CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence            99 79999999999999         9999999999999999999999999999999999        999999999999


Q ss_pred             HHhhcC---CchhhHHHHHHHHHHhc
Q 039523          144 VLNITN---NKRIDTELLERIVLNLE  166 (244)
Q Consensus       144 al~~~p---~~~~~~~~l~~~~~~~~  166 (244)
                      +++++|   +.+..+..+........
T Consensus       247 al~~~p~~~~~~~~~~~lg~~~~~~g  272 (474)
T 4abn_A          247 AEKVDRKASSNPDLHLNRATLHKYEE  272 (474)
T ss_dssp             HHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCCcccCHHHHHHHHHHHHHcC
Confidence            999999   76665555555544333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.87  E-value=4.4e-20  Score=150.67  Aligned_cols=166  Identities=14%  Similarity=0.113  Sum_probs=148.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHH------------HHHHHHccCHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFAL------------GAAALKARDVEK   68 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~   68 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++...+..+            |.++...|++++
T Consensus       196 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  275 (450)
T 2y4t_A          196 AISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD  275 (450)
T ss_dssp             GHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            57789999999999999999999999999999999999999999999988887666            899999999999


Q ss_pred             HHHHHHHHHhcCCCcHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523           69 ALDVFTRAVQLDPENGE----AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus        69 A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                      |+..|++++...|+++.    .+..+|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..++++
T Consensus       276 A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  355 (450)
T 2y4t_A          276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA  355 (450)
T ss_dssp             HHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999998854    78889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHHHHHHHHhc
Q 039523          145 LNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       145 l~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ++++|+++.....+..+.....
T Consensus       356 l~~~p~~~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          356 QEHNENDQQIREGLEKAQRLLK  377 (450)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHhCcchHHHHHHHHHHHHHhh
Confidence            9999998777777766555444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.86  E-value=7e-20  Score=135.51  Aligned_cols=157  Identities=13%  Similarity=-0.018  Sum_probs=147.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNR-GEYETSKILREAAMA--LNSLYPDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      |+.+|+++++.+|.++.++..+|.++... |++++|+..+++++.  ..|.+..++..+|.++...|++++|+..+++++
T Consensus        61 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  140 (225)
T 2vq2_A           61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL  140 (225)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999 999999999999999  667778999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523           78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR-NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      +.+|.++.++..+|.++...|++++|...+++++...| .+...+..++.++...|+.+.|..+++.+.+..|+++....
T Consensus       141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  220 (225)
T 2vq2_A          141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT  220 (225)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999999999999999999999999 99999999999999999999999999999999999765544


Q ss_pred             H
Q 039523          157 L  157 (244)
Q Consensus       157 ~  157 (244)
                      .
T Consensus       221 ~  221 (225)
T 2vq2_A          221 V  221 (225)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.86  E-value=4.2e-20  Score=140.64  Aligned_cols=149  Identities=15%  Similarity=0.071  Sum_probs=135.5

Q ss_pred             HhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--
Q 039523            9 WKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN--   83 (244)
Q Consensus         9 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--   83 (244)
                      ...+|.++..++.+|..++..|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|+++++..|++  
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            45688999999999999999999999999999999999998   8899999999999999999999999999998854  


Q ss_pred             -HHHHHHHHHHHHH--------cCChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHH
Q 039523           84 -GEAWNIIACLHMI--------KNKSKEAFIAFKEALKLKRNGWQLW-----------------ENYSHVALDVGNIGQA  137 (244)
Q Consensus        84 -~~~~~~l~~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~~~~~~A  137 (244)
                       +.+++.+|.++..        .|++++|+..|++++...|++..+.                 +.+|.++...|++++|
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence             6789999999999        9999999999999999999986665                 8889999999999999


Q ss_pred             HHHHHHHHhhcCCchhhHHH
Q 039523          138 LEAVQMVLNITNNKRIDTEL  157 (244)
Q Consensus       138 ~~~~~~al~~~p~~~~~~~~  157 (244)
                      +..|+++++..|+.......
T Consensus       168 ~~~~~~~l~~~p~~~~~~~a  187 (261)
T 3qky_A          168 AVTYEAVFDAYPDTPWADDA  187 (261)
T ss_dssp             HHHHHHHHHHCTTSTTHHHH
T ss_pred             HHHHHHHHHHCCCCchHHHH
Confidence            99999999999986543333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.86  E-value=8.2e-21  Score=149.90  Aligned_cols=147  Identities=12%  Similarity=0.094  Sum_probs=139.2

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------hhHHHHHHHHHHHccC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---------------PDGWFALGAAALKARD   65 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~   65 (244)
                      |+..|++++..+|+++.++..+|.+++..|++++|+..|++++..+|.+               ..++.++|.++...|+
T Consensus       132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~  211 (336)
T 1p5q_A          132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA  211 (336)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5677888888999999999999999999999999999999999999998               5899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 039523           66 VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA-LEAVQMV  144 (244)
Q Consensus        66 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~a  144 (244)
                      +++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| ...|++.
T Consensus       212 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998 5577777


Q ss_pred             Hhh
Q 039523          145 LNI  147 (244)
Q Consensus       145 l~~  147 (244)
                      +..
T Consensus       292 ~~~  294 (336)
T 1p5q_A          292 FER  294 (336)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.86  E-value=4e-21  Score=133.97  Aligned_cols=114  Identities=19%  Similarity=0.137  Sum_probs=60.2

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      .|++++..+|++..+++.+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      +.+++.+|.++...|++++|+..|++++++.|++
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            5555555555555555555555555555554444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=5e-20  Score=143.70  Aligned_cols=162  Identities=12%  Similarity=0.040  Sum_probs=143.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-hCCCChhHHHHHHHHHHHccC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYN-------RGEY-------ETSKILREAAMA-LNSLYPDGWFALGAAALKARD   65 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~   65 (244)
                      |+..|++++..+|+++.+|+.+|..+..       .|++       ++|+..|++++. .+|++..+|..+|.++...|+
T Consensus        35 a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~  114 (308)
T 2ond_A           35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence            3568999999999999999999999874       5885       999999999999 799999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 039523           66 VEKALDVFTRAVQLDPENGE-AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD-VGNIGQALEAVQM  143 (244)
Q Consensus        66 ~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~  143 (244)
                      +++|...|+++++.+|.++. +|..+|.++...|++++|...|+++++..|....+|...+.+... .|++++|+.+|++
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~  194 (308)
T 2ond_A          115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL  194 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999887 999999999999999999999999999999988888877776544 7999999999999


Q ss_pred             HHhhcCCchhhHHHHHHHH
Q 039523          144 VLNITNNKRIDTELLERIV  162 (244)
Q Consensus       144 al~~~p~~~~~~~~l~~~~  162 (244)
                      +++..|+.+..+..+..+.
T Consensus       195 al~~~p~~~~~~~~~~~~~  213 (308)
T 2ond_A          195 GLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHH
Confidence            9999998766555544443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.86  E-value=5.7e-21  Score=133.17  Aligned_cols=129  Identities=12%  Similarity=0.053  Sum_probs=118.9

Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523           35 SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK  114 (244)
Q Consensus        35 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  114 (244)
                      +...+++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523          115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      |+++.+++++|.++...|++++|+.+|++++++.|+++.......+...
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  134 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS  134 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence            9999999999999999999999999999999999987655544444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=7.6e-20  Score=149.27  Aligned_cols=162  Identities=12%  Similarity=0.091  Sum_probs=132.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+
T Consensus        45 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  124 (450)
T 2y4t_A           45 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN  124 (450)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            46778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcH---HHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039523           81 PENG---EAWNII------------ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVL  145 (244)
Q Consensus        81 p~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  145 (244)
                      |++.   .++..+            |.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|++++
T Consensus       125 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  204 (450)
T 2y4t_A          125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS  204 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8877   665554            5568888888888888888888888888888888888888888888888888888


Q ss_pred             hhcCCchhhHHHHHHHH
Q 039523          146 NITNNKRIDTELLERIV  162 (244)
Q Consensus       146 ~~~p~~~~~~~~l~~~~  162 (244)
                      +..|++...+..+....
T Consensus       205 ~~~~~~~~~~~~l~~~~  221 (450)
T 2y4t_A          205 KLKNDNTEAFYKISTLY  221 (450)
T ss_dssp             HHHCSCHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHH
Confidence            88887665555444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.86  E-value=8.2e-21  Score=144.93  Aligned_cols=147  Identities=10%  Similarity=0.099  Sum_probs=93.9

Q ss_pred             CchHHHHHHhhccCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMIS----QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      |+..|+++++ .|.+    ..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++
T Consensus        56 A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  134 (272)
T 3u4t_A           56 AQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ  134 (272)
T ss_dssp             HHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred             HHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3556666666 2222    3346666666666777777777777777666666666666677777777777777777666


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhc
Q 039523           77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN---IGQALEAVQMVLNIT  148 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~  148 (244)
                      ++.+|.++.++..+|......+++++|+..++++++.+|++..++..+|.++...|+   +++|+..++++++..
T Consensus       135 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred             hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence            666666666666666334444566666666666666666666666666666666665   555666666665554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.86  E-value=6.1e-20  Score=136.84  Aligned_cols=149  Identities=11%  Similarity=0.070  Sum_probs=84.1

Q ss_pred             chHHHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHH-------------
Q 039523            2 MPAMKKLWKFQMIS---QLELRSLARSAYNRGEYETSKILREAAMALNSLYPD---GWFALGAAALK-------------   62 (244)
Q Consensus         2 i~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~-------------   62 (244)
                      +..|+++++..|++   ..+++.+|.+++..|++++|+..|+++++.+|+++.   +++.+|.++..             
T Consensus        24 ~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~  103 (225)
T 2yhc_A           24 ITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVD  103 (225)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence            45555555555544   245556666666666666666666666666555543   45555555544             


Q ss_pred             -----ccCHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhcCCCCH--
Q 039523           63 -----ARDVEKALDVFTRAVQLDPENGEAW-----------------NIIACLHMIKNKSKEAFIAFKEALKLKRNGW--  118 (244)
Q Consensus        63 -----~g~~~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~--  118 (244)
                           .|++++|+..|+++++..|+++.++                 ..+|.++...|++++|+..|+++++..|+++  
T Consensus       104 ~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  183 (225)
T 2yhc_A          104 RSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT  183 (225)
T ss_dssp             ----CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             hhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence                 3455666666666666665554332                 3455555566666666666666666655553  


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          119 -QLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       119 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                       .++..+|.++..+|++++|+..++++....|+
T Consensus       184 ~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          184 RDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence             44555666666666666666666555555544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.85  E-value=8.6e-20  Score=154.10  Aligned_cols=163  Identities=16%  Similarity=0.096  Sum_probs=131.3

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|+++++.+|.+..+|..+|..+...|++++|+..|++++...|++..++..+|.++.+.|++++|.+.|+++++.+
T Consensus       392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  471 (597)
T 2xpi_A          392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF  471 (597)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            46778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL------KRNG-WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                      |.++.+|..+|.++...|++++|+..|+++++.      +|+. ..+|..+|.++...|++++|+..++++++..|++..
T Consensus       472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  551 (597)
T 2xpi_A          472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN  551 (597)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            888888888888888888888888888888877      5554 677888888888888888888888888888887665


Q ss_pred             hHHHHHHHHH
Q 039523          154 DTELLERIVL  163 (244)
Q Consensus       154 ~~~~l~~~~~  163 (244)
                      .+..+.....
T Consensus       552 ~~~~l~~~~~  561 (597)
T 2xpi_A          552 VHTAIALVYL  561 (597)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.85  E-value=6.1e-21  Score=132.09  Aligned_cols=117  Identities=17%  Similarity=0.121  Sum_probs=70.4

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523            4 AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus         4 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      .|++++..+|++...++.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++..+|++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34555555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL  120 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  120 (244)
                      +.+++.+|.++...|++++|+..|++++.+.|+++..
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  122 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH  122 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence            6666666666666666666666666666665555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=1.6e-19  Score=139.66  Aligned_cols=160  Identities=12%  Similarity=0.013  Sum_probs=136.9

Q ss_pred             CchHHHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            1 MMPAMKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         1 Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |++.+++++..  +|+++.+++.+|.++...|++++|+..+++     |.++.++..+|.++...|++++|.+.++++++
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  158 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQD  158 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            45677887765  699999999999999999999999999988     88999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHH--HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523           79 LDPENGEAWNIIA--CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus        79 ~~p~~~~~~~~l~--~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      .+|++.......+  .++...|++++|+..|++++...|+++.++.++|.++...|++++|...++++++.+|+++..+.
T Consensus       159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~  238 (291)
T 3mkr_A          159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI  238 (291)
T ss_dssp             HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9998865544433  33445588999999999999999999999999999999999999999999999999999877666


Q ss_pred             HHHHHHHHh
Q 039523          157 LLERIVLNL  165 (244)
Q Consensus       157 ~l~~~~~~~  165 (244)
                      .+.......
T Consensus       239 ~l~~~~~~~  247 (291)
T 3mkr_A          239 NLVVLSQHL  247 (291)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            665554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.85  E-value=2.9e-19  Score=121.40  Aligned_cols=134  Identities=24%  Similarity=0.456  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      .+++.+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|...+++++...|.++.++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .|++++|+..+++++...|++..++..+|.++...|++++|..+++++++.+|+
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999999999999999999999999999886

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.85  E-value=2.3e-19  Score=139.92  Aligned_cols=147  Identities=14%  Similarity=0.097  Sum_probs=139.0

Q ss_pred             CchHHHHHHh-hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            1 MMPAMKKLWK-FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD-GWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         1 Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |+..|++|++ ++|++..+|..+|..+...|++++|+..|+++++..|.++. +|..+|.++.+.|++++|...|+++++
T Consensus        83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A           83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            4678999999 79999999999999999999999999999999999999987 999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           79 LDPENGEAWNIIACLHMI-KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      .+|.+..+|...+.+... .|++++|...|+++++..|+++.+|..++.++...|++++|+..|++++..
T Consensus       163 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999988877776544 799999999999999999999999999999999999999999999999996

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.85  E-value=8.5e-20  Score=142.56  Aligned_cols=163  Identities=15%  Similarity=0.111  Sum_probs=132.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL-   79 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-   79 (244)
                      |+.+|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++.. 
T Consensus        40 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  119 (327)
T 3cv0_A           40 AALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  119 (327)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4677888888888888888888888888888888888888888888888888888888888888877777766665544 


Q ss_pred             ------------------------------------------------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523           80 ------------------------------------------------DPENGEAWNIIACLHMIKNKSKEAFIAFKEAL  111 (244)
Q Consensus        80 ------------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  111 (244)
                                                                      +|.++.++..+|.++...|++++|+..+++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  199 (327)
T 3cv0_A          120 PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV  199 (327)
T ss_dssp             TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence                                                            45566778888888888888888888888888


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523          112 KLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       112 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      ...|+++.++..+|.++...|++++|+.+++++++..|+.......+.....
T Consensus       200 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  251 (327)
T 3cv0_A          200 ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS  251 (327)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888886655555444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=1.6e-19  Score=139.71  Aligned_cols=153  Identities=10%  Similarity=-0.019  Sum_probs=134.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHH--HHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALG--AAALKARDVEKALDVFTRAVQLDPENGEAWNII   90 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l   90 (244)
                      |+++.++..+|.++..+|++++|+..++++++.+|++.......+  .++...|++++|+..|++++..+|+++.+++.+
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            889999999999999999999999999999999998765444333  334456899999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523           91 ACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ-ALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus        91 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      |.++...|++++|...+++++..+|+++.++.++|.++...|+..+ +..+++++++++|+++..... ......+.
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~-~~~~~~fd  282 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY-RAKENDFD  282 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHH
Confidence            9999999999999999999999999999999999999999999976 578999999999998865543 33333343

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.84  E-value=2.8e-19  Score=150.93  Aligned_cols=148  Identities=11%  Similarity=0.101  Sum_probs=140.0

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+++.++..+|..+...|++++|+..|+++++.+|.+..+|..+|.++...|++++|++.|+++++..
T Consensus       358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      |++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++..
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  505 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV  505 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999884

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.84  E-value=3.7e-20  Score=144.60  Aligned_cols=150  Identities=13%  Similarity=0.095  Sum_probs=137.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+
T Consensus       157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------------GWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      |+++.++..+|.++...|++++|+..+++++...|+            +..++..+|.++...|++++|...+++++...
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  316 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF  316 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999998            78899999999999999999999998887766


Q ss_pred             CC
Q 039523          149 NN  150 (244)
Q Consensus       149 p~  150 (244)
                      |+
T Consensus       317 ~~  318 (327)
T 3cv0_A          317 AK  318 (327)
T ss_dssp             HH
T ss_pred             ch
Confidence            54

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.84  E-value=1.8e-20  Score=134.38  Aligned_cols=150  Identities=13%  Similarity=0.078  Sum_probs=101.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC   92 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~   92 (244)
                      |.....++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+...+.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            444455677777777777777777777777777777777777777777777777777777777777777 6665555554


Q ss_pred             HHH-HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc--hhhHHHHHHHHH
Q 039523           93 LHM-IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK--RIDTELLERIVL  163 (244)
Q Consensus        93 ~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~  163 (244)
                      +.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  ......+..+..
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence            422 22333456777777777777777777777777777777777777777777777763  223444444333

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=4.4e-19  Score=127.14  Aligned_cols=149  Identities=15%  Similarity=0.175  Sum_probs=139.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      ....+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|...++++++.+|.++.++..+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523           95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus        95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      ...|++++|...+++++...|+++.++..+|.++...|++++|+.+++++++..|+.......+.....
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  155 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE  155 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987655555554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.84  E-value=5.1e-20  Score=127.38  Aligned_cols=127  Identities=13%  Similarity=0.075  Sum_probs=114.9

Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523           37 ILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN  116 (244)
Q Consensus        37 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  116 (244)
                      ..+++++..+|++...++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523          117 GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       117 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      ++.+++.+|.++...|++++|+.+|++++++.|+++.......+...
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  131 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA  131 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence            99999999999999999999999999999999987655554444433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.6e-19  Score=149.42  Aligned_cols=154  Identities=16%  Similarity=0.093  Sum_probs=88.2

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      +..|+++++.+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  403 (514)
T 2gw1_A          324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN  403 (514)
T ss_dssp             HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CcHH------HHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           82 ENGE------AWNIIACLHMI---KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        82 ~~~~------~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      +++.      ++..+|.++..   .|++++|+..+++++...|+++.++..+|.++...|++++|...|+++++++|+++
T Consensus       404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  483 (514)
T 2gw1_A          404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME  483 (514)
T ss_dssp             TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred             ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence            5433      55555555555   55566666666655555555555555566666666666666666666666555544


Q ss_pred             hhH
Q 039523          153 IDT  155 (244)
Q Consensus       153 ~~~  155 (244)
                      ...
T Consensus       484 ~~~  486 (514)
T 2gw1_A          484 EKL  486 (514)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.83  E-value=7.8e-19  Score=135.61  Aligned_cols=155  Identities=12%  Similarity=0.017  Sum_probs=143.2

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      -|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+...+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            58889999999999999999999999999999999999999999999999999999999999999999998777778888


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc--hhhHHHHHHHHHHhc
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK--RIDTELLERIVLNLE  166 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~  166 (244)
                      ..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|+.  ......+..+.....
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            889999999999999999999999999999999999999999999999999999999997  555555655555444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.83  E-value=1.4e-19  Score=133.21  Aligned_cols=135  Identities=16%  Similarity=0.147  Sum_probs=122.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHH----------------HHHHHHHccCHHHHHHHHHHHHh
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFA----------------LGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      ++..++..|..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhcC
Q 039523           79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN--IGQALEAVQMVLNITN  149 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p  149 (244)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|+  ...+...+.+++...|
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK  155 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999999999999999999999999999999999987764  4556777777765433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3.8e-19  Score=120.27  Aligned_cols=118  Identities=13%  Similarity=0.117  Sum_probs=89.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC   92 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~   92 (244)
                      |..+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHH
Q 039523           93 LHMIKNKSKEAFIAFKEALKLK------RNGWQLWENYSHVALD  130 (244)
Q Consensus        93 ~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~  130 (244)
                      ++...|++++|+..|+++++++      |++..++..++.+...
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            7777777777777777777777      7777777666665543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.83  E-value=2e-19  Score=149.90  Aligned_cols=150  Identities=17%  Similarity=0.194  Sum_probs=145.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+ +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+
T Consensus       262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  340 (537)
T 3fp2_A          262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN  340 (537)
T ss_dssp             HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            46789999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      |+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.+|+++++..|+.
T Consensus       341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=7.1e-19  Score=146.53  Aligned_cols=164  Identities=12%  Similarity=0.142  Sum_probs=149.0

Q ss_pred             CchHHHHHHhhccCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQL-------ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVF   73 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~   73 (244)
                      |+.+|+++++.+|+++.       ++..+|.++...|++++|+..+++++..+|+ ..++..+|.++...|++++|+..+
T Consensus       221 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~  299 (537)
T 3fp2_A          221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFF  299 (537)
T ss_dssp             HHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHH
Confidence            45688888999999865       5788889999999999999999999999998 999999999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523           74 TRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        74 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                      ++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+.+++++++..|++..
T Consensus       300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  379 (537)
T 3fp2_A          300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE  379 (537)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999776


Q ss_pred             hHHHHHHHHHHh
Q 039523          154 DTELLERIVLNL  165 (244)
Q Consensus       154 ~~~~l~~~~~~~  165 (244)
                      ....+.......
T Consensus       380 ~~~~l~~~~~~~  391 (537)
T 3fp2_A          380 VPTFFAEILTDR  391 (537)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            665555544433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.1e-19  Score=147.75  Aligned_cols=160  Identities=14%  Similarity=0.079  Sum_probs=100.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+
T Consensus       289 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  368 (514)
T 2gw1_A          289 YYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF  368 (514)
T ss_dssp             GGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhhcCCc
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ------LWENYSHVALD---VGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~  151 (244)
                      |+++.++..+|.++...|++++|+..+++++...|++..      ++..+|.++..   .|++++|+..++++++..|+.
T Consensus       369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  448 (514)
T 2gw1_A          369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS  448 (514)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence            666666666666666666666666666666666555533      66666666666   666666666666666666665


Q ss_pred             hhhHHHHHH
Q 039523          152 RIDTELLER  160 (244)
Q Consensus       152 ~~~~~~l~~  160 (244)
                      ......+..
T Consensus       449 ~~~~~~la~  457 (514)
T 2gw1_A          449 EQAKIGLAQ  457 (514)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444333333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.82  E-value=4.7e-19  Score=126.91  Aligned_cols=135  Identities=21%  Similarity=0.225  Sum_probs=119.6

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCh--HH
Q 039523           26 AYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL-HMIKNKS--KE  102 (244)
Q Consensus        26 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~--~~  102 (244)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999 8899998  99


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523          103 AFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus       103 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |+..+++++..+|++..++..+|.++...|++++|+.+++++++.+|++......+..
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987544444333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.82  E-value=1.4e-19  Score=139.77  Aligned_cols=146  Identities=11%  Similarity=0.056  Sum_probs=139.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+...++.++|+..+++++..+
T Consensus       136 A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~  215 (287)
T 3qou_A          136 ALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN  215 (287)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC
Confidence            56889999999999999999999999999999999999999999999777777788888899999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG--WQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      |+++.+++.+|.++...|++++|+..|+++++.+|++  ..++..++.++...|+.++|...|++++.
T Consensus       216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          216 PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999998  88999999999999999999999999875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.82  E-value=1.7e-19  Score=139.62  Aligned_cols=152  Identities=14%  Similarity=0.050  Sum_probs=129.2

Q ss_pred             CchHHHHHHhhccC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHc-cCHH
Q 039523            1 MMPAMKKLWKFQMI------SQLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKA-RDVE   67 (244)
Q Consensus         1 Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~   67 (244)
                      |+.+|++++++.+.      .+.++..+|.++...|++++|+.+|++++.+.|..      ..++..+|.++... |+++
T Consensus        56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~  135 (292)
T 1qqe_A           56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA  135 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence            56788899888432      26789999999999999999999999999987654      45788999999996 9999


Q ss_pred             HHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCH
Q 039523           68 KALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ-------LWENYSHVALDVGNI  134 (244)
Q Consensus        68 ~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~la~~~~~~~~~  134 (244)
                      +|+.+|++++.+.|..      ..++.++|.++..+|++++|+.+|++++...|++..       ++.++|.++..+|++
T Consensus       136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  215 (292)
T 1qqe_A          136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA  215 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999987754      467889999999999999999999999999887643       678999999999999


Q ss_pred             HHHHHHHHHHHhhcCCch
Q 039523          135 GQALEAVQMVLNITNNKR  152 (244)
Q Consensus       135 ~~A~~~~~~al~~~p~~~  152 (244)
                      ++|+.+|+++++++|+..
T Consensus       216 ~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          216 VAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             HHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHHhhCCCCC
Confidence            999999999999999854

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.82  E-value=2.6e-18  Score=121.26  Aligned_cols=134  Identities=19%  Similarity=0.176  Sum_probs=125.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      .+..+..+|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+..+.+++..+|.++.+++.+|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhc
Q 039523           95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV--ALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~~al~~~  148 (244)
                      ...|++++|+.++++++..+|++..++..++.+  +...|++++|+..+.++....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            999999999999999999999999888555554  888899999999998876653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.82  E-value=2.2e-18  Score=128.42  Aligned_cols=145  Identities=16%  Similarity=0.135  Sum_probs=129.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHH---HHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKARDVEKALDVFTRAVQLDPENGE---AWN   88 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~   88 (244)
                      ++..++.+|..++..|++++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            578899999999999999999999999999999774   68999999999999999999999999999998864   789


Q ss_pred             HHHHHHHH------------------cCChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCC
Q 039523           89 IIACLHMI------------------KNKSKEAFIAFKEALKLKRNGWQLW-----------------ENYSHVALDVGN  133 (244)
Q Consensus        89 ~l~~~~~~------------------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~~~  133 (244)
                      .+|.++..                  .|++++|+..|+++++..|++..++                 ..+|.++...|+
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99998876                  5789999999999999999986554                 578899999999


Q ss_pred             HHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523          134 IGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus       134 ~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      +++|+..|+++++..|+.+.....+.
T Consensus       163 ~~~A~~~~~~~l~~~p~~~~~~~a~~  188 (225)
T 2yhc_A          163 WVAVVNRVEGMLRDYPDTQATRDALP  188 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCCCccHHHHH
Confidence            99999999999999999764433333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=6e-19  Score=151.46  Aligned_cols=132  Identities=11%  Similarity=-0.067  Sum_probs=125.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ ++.|+++++.+
T Consensus       452 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~  530 (681)
T 2pzi_A          452 ATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN  530 (681)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN  133 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~  133 (244)
                      |+++.+++++|.++..+|++++|+..|+++++++|++..++.++|.++...++
T Consensus       531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99999999999999999999999999999999999999999999999987666

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.81  E-value=3.1e-19  Score=127.92  Aligned_cols=145  Identities=11%  Similarity=0.015  Sum_probs=131.0

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHH-HccCHHHHHHHHHHHHhc
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAAL-KARDVEKALDVFTRAVQL   79 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~   79 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.+.. ..++..+|+..++++++.
T Consensus        25 A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  103 (176)
T 2r5s_A           25 ALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA  103 (176)
T ss_dssp             HHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh
Confidence            46788999999999999999999999999999999999999999999 8877666665533 334455689999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG--WQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+.  ..++..++.++...|+.++|+..|++++.
T Consensus       104 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          104 NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999975  66999999999999999999999999875

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.81  E-value=2e-18  Score=127.06  Aligned_cols=134  Identities=17%  Similarity=0.149  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      ...++.+|..+...|++++|+..|++++  +| ++.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4567899999999999999999999995  44 78899999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGW----------------QLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      ..|++++|+..|+++++..|++.                .++.++|.++...|++++|+.++++++++.|+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            99999999999999999888766                9999999999999999999999999999999854

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.81  E-value=1.5e-18  Score=117.24  Aligned_cols=125  Identities=19%  Similarity=0.171  Sum_probs=119.5

Q ss_pred             hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523           10 KFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI   89 (244)
Q Consensus        10 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~   89 (244)
                      +.+|.++..+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+.++.+++..+|+++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            44677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 039523           90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNI  134 (244)
Q Consensus        90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~  134 (244)
                      +|.++...|++++|+..+++++...|++..++..++.++...|++
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999998875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.80  E-value=1.2e-17  Score=129.28  Aligned_cols=167  Identities=10%  Similarity=-0.014  Sum_probs=158.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCChhHHHHHHHHH----HHc---cCHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRG--EYETSKILREAAMALNSLYPDGWFALGAAA----LKA---RDVEKALD   71 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~~A~~   71 (244)
                      |+.+++++|.++|++..+|...+.++...|  ++++++.++.+++..+|.+..+|...+.++    ...   +++++++.
T Consensus        52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            578899999999999999999999999999  999999999999999999999999999999    777   78999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHH
Q 039523           72 VFTRAVQLDPENGEAWNIIACLHMIKNKSK--EAFIAFKEALKLKRNGWQLWENYSHVALDVGN------IGQALEAVQM  143 (244)
Q Consensus        72 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~  143 (244)
                      ++.+++..+|.+..+|...+.++...|.++  ++++++.++++.+|.+..+|...+.+....|+      ++++++++.+
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~  211 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKD  211 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence            999999999999999999999999999998  99999999999999999999999999999987      9999999999


Q ss_pred             HHhhcCCchhhHHHHHHHHHHhcc
Q 039523          144 VLNITNNKRIDTELLERIVLNLEG  167 (244)
Q Consensus       144 al~~~p~~~~~~~~l~~~~~~~~~  167 (244)
                      ++..+|++...+..+..+....+.
T Consensus       212 aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          212 KIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCCCccHHHHHHHHHHhcCC
Confidence            999999999888888888877664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.2e-18  Score=116.46  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=107.3

Q ss_pred             CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523           47 SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH  126 (244)
Q Consensus        47 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  126 (244)
                      |..+..+..+|..++..|++++|+..|+++++.+|+++.+|.++|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhc------CCchhhHHHHHHHHH
Q 039523          127 VALDVGNIGQALEAVQMVLNIT------NNKRIDTELLERIVL  163 (244)
Q Consensus       127 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~  163 (244)
                      ++...|++++|+..|+++++++      |++......+.....
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999      776655555555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.80  E-value=1.7e-18  Score=117.56  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=113.6

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      .|.++.+++.+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+.+++++++.+|+++.+++.+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN  133 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~  133 (244)
                      .++...|++++|+..+++++..+|++..++..++.++...|+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999887764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.80  E-value=5.7e-19  Score=144.90  Aligned_cols=145  Identities=13%  Similarity=0.103  Sum_probs=130.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------hhHHHHHHHHHHHccC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---------------PDGWFALGAAALKARD   65 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~   65 (244)
                      |+..|++++...|..+..+..+|..++..|++++|+..|++++..+|.+               ..++.++|.++.+.|+
T Consensus       253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~  332 (457)
T 1kt0_A          253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE  332 (457)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567788888899999999999999999999999999999999999988               6899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 039523           66 VEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE-AVQMV  144 (244)
Q Consensus        66 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~a  144 (244)
                      +++|+.+|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++...++++++.. .+.+.
T Consensus       333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988764 34444


Q ss_pred             H
Q 039523          145 L  145 (244)
Q Consensus       145 l  145 (244)
                      +
T Consensus       413 f  413 (457)
T 1kt0_A          413 F  413 (457)
T ss_dssp             -
T ss_pred             H
Confidence            3

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.80  E-value=3.2e-18  Score=122.58  Aligned_cols=121  Identities=13%  Similarity=0.143  Sum_probs=116.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHH-HHHccCH--HHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAA-ALKARDV--EKALDVFTRAV   77 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A~~~~~~a~   77 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++  ++|+..+++++
T Consensus        29 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             CCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999 8899999  99999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523           78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW  121 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  121 (244)
                      ..+|+++.+++.+|.++...|++++|+..+++++..+|++....
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            99999999999999999999999999999999999999875443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.80  E-value=1.8e-18  Score=122.49  Aligned_cols=103  Identities=19%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVAL  129 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  129 (244)
                      +..+..+|.+++..|++++|+.+|+++++.+|+++.+|+++|.++...|++++|+..|++++.++|+++.+++.+|.++.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhhcCCch
Q 039523          130 DVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus       130 ~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      ..|++++|+.+|+++++++|++.
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HccCHHHHHHHHHHHHHhCCCch
Confidence            55555555555555555555543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.79  E-value=7.9e-19  Score=134.10  Aligned_cols=149  Identities=19%  Similarity=0.172  Sum_probs=134.2

Q ss_pred             CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHcc
Q 039523            1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKAR   64 (244)
Q Consensus         1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g   64 (244)
                      |+.+|+++++.        +|..+.++..+|.++...|++++|+..+++++...        |....++..+|.++...|
T Consensus        20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g   99 (283)
T 3edt_B           20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG   99 (283)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence            45677777774        36778899999999999999999999999999873        555678999999999999


Q ss_pred             CHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH
Q 039523           65 DVEKALDVFTRAVQL--------DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--------KRNGWQLWENYSHVA  128 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~  128 (244)
                      ++++|+.++.+++..        +|....++..+|.++...|++++|+.++++++..        .|....++..+|.++
T Consensus       100 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  179 (283)
T 3edt_B          100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY  179 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999988        4667889999999999999999999999999998        677788999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhcC
Q 039523          129 LDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~~p  149 (244)
                      ...|++++|+.+++++++..+
T Consensus       180 ~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          180 LKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998743

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.79  E-value=2.3e-18  Score=125.71  Aligned_cols=134  Identities=14%  Similarity=0.151  Sum_probs=106.9

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh----------------hHHHHHHHHHHHccCHHHHHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP----------------DGWFALGAAALKARDVEKALDVFTR   75 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~   75 (244)
                      .+..+..+..+|..++..|++++|+..|++++...|.++                .++..+|.++...|++++|+.++++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            445567788888888888888888888888888888776                7888888888888888888888888


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 039523           76 AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL-EAVQMVL  145 (244)
Q Consensus        76 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al  145 (244)
                      ++..+|+++.+++.+|.++...|++++|+..|++++.++|++..++..++.++...++..++. ..+.+.+
T Consensus       114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888888888888888888888888888888888888888888888887777665 3344433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.78  E-value=3.8e-17  Score=109.37  Aligned_cols=122  Identities=24%  Similarity=0.426  Sum_probs=109.9

Q ss_pred             hccCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHH
Q 039523           11 FQMIS-QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNI   89 (244)
Q Consensus        11 ~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~   89 (244)
                      .+|.. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            35655 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523           90 IACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG  132 (244)
Q Consensus        90 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~  132 (244)
                      +|.++...|++++|+..+++++..+|++..++..++.++...|
T Consensus        83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999998887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.78  E-value=8.6e-18  Score=115.00  Aligned_cols=118  Identities=19%  Similarity=0.174  Sum_probs=75.9

Q ss_pred             hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523           11 FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNII   90 (244)
Q Consensus        11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l   90 (244)
                      .+|.++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHH
Q 039523           91 ACLHMIKNKSKEAFIAFKEALKLKRN-----GWQLWENYSHVA  128 (244)
Q Consensus        91 ~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~la~~~  128 (244)
                      |.++...|++++|+..|++++...|+     +..++..+..+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666655     444444444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.78  E-value=2e-17  Score=116.96  Aligned_cols=117  Identities=21%  Similarity=0.152  Sum_probs=110.6

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      ++.++..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      .++...|++++|+.+|+++++++|++...+...+...
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999999999999999988776666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.77  E-value=1.7e-17  Score=139.15  Aligned_cols=166  Identities=10%  Similarity=0.058  Sum_probs=156.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc--CHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGE----------YETSKILREAAMALNSLYPDGWFALGAAALKAR--DVEK   68 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~   68 (244)
                      |++.++++++.+|++..+|...+.++...|+          +++++.++.+++..+|++..+|...+.++.+.|  ++++
T Consensus        48 al~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~  127 (567)
T 1dce_A           48 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR  127 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHH
Confidence            5788999999999999999999999999988          999999999999999999999999999999999  7799


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------CC
Q 039523           69 ALDVFTRAVQLDPENGEAWNIIACLHMIKN-KSKEAFIAFKEALKLKRNGWQLWENYSHVALDV--------------GN  133 (244)
Q Consensus        69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--------------~~  133 (244)
                      +++.++++++.+|.+..+|...+.+....| .++++++++.++++.+|++..+|+..+.++...              +.
T Consensus       128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~  207 (567)
T 1dce_A          128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV  207 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHH
Confidence            999999999999999999999999999999 899999999999999999999999999998885              56


Q ss_pred             HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          134 IGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       134 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ++++++++.+++.++|++...+..+..+.....
T Consensus       208 ~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          208 LLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             HHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence            799999999999999999988888888876544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.77  E-value=4.1e-18  Score=130.11  Aligned_cols=148  Identities=16%  Similarity=0.131  Sum_probs=132.9

Q ss_pred             CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChhHHHHHHHHHHHcc
Q 039523            1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMAL--------NSLYPDGWFALGAAALKAR   64 (244)
Q Consensus         1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g   64 (244)
                      |+.+|+++++.        +|....++..+|.++...|++++|+.++++++..        +|....++..+|.++...|
T Consensus        62 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  141 (283)
T 3edt_B           62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG  141 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Confidence            46788888877        4677889999999999999999999999999988        4666789999999999999


Q ss_pred             CHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------
Q 039523           65 DVEKALDVFTRAVQL--------DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL-----------------------  113 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------  113 (244)
                      ++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++..                       
T Consensus       142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  221 (283)
T 3edt_B          142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER  221 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence            999999999999998        6777889999999999999999999999999976                       


Q ss_pred             --------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523          114 --------------------------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       114 --------------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                                                .|....++..+|.++...|++++|..+++++++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                                      24446788999999999999999999999999753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.77  E-value=5.3e-18  Score=130.54  Aligned_cols=146  Identities=16%  Similarity=0.109  Sum_probs=126.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIAC   92 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~   92 (244)
                      |.++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCH-----HHH--------------------------HHHHHHHHHcCCHHHHHHHH
Q 039523           93 LHMIKNKSKEAFIAFKEALKLKRNGW-----QLW--------------------------ENYSHVALDVGNIGQALEAV  141 (244)
Q Consensus        93 ~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~--------------------------~~la~~~~~~~~~~~A~~~~  141 (244)
                      ++...|++++|+..|+++++++|++.     .++                          ..++.+  ..|++++|+..+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~  158 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEEC  158 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence            99999999999999999999987541     111                          122222  357889999999


Q ss_pred             HHHHhhcCCchhhHHHHHH
Q 039523          142 QMVLNITNNKRIDTELLER  160 (244)
Q Consensus       142 ~~al~~~p~~~~~~~~l~~  160 (244)
                      +++++.+|++......+..
T Consensus       159 ~~al~~~p~~~~~~~~l~~  177 (281)
T 2c2l_A          159 QRNHEGHEDDGHIRAQQAC  177 (281)
T ss_dssp             SGGGTTTSCHHHHTHHHHH
T ss_pred             HhhhccccchhhhhhHHHH
Confidence            9999999985544444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.77  E-value=1e-17  Score=113.47  Aligned_cols=101  Identities=16%  Similarity=0.215  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH-------HHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG-------EAW   87 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~   87 (244)
                      .+.++..+|..++..|+|++|+..|+++++++|+++.++.++|.++...|++++|++.++++++++|++.       .++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            3445556666666666666666666666666666666666666666666666666666666666555432       234


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523           88 NIIACLHMIKNKSKEAFIAFKEALKLKR  115 (244)
Q Consensus        88 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p  115 (244)
                      ..+|.++..+|++++|+..|++++...|
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            4444444444444444444444444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.77  E-value=2.4e-20  Score=147.21  Aligned_cols=136  Identities=17%  Similarity=0.067  Sum_probs=125.2

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHH
Q 039523           28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---------------GEAWNIIAC   92 (244)
Q Consensus        28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~   92 (244)
                      ..+++++|+..+++++..+|.++.++..+|.+++..|++++|+..|++++..+|++               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999999999999999999999999998               699999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523           93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus        93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      ++...|++++|+.+|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++......+..+..
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997665555554443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.77  E-value=5.3e-18  Score=117.37  Aligned_cols=129  Identities=17%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      +..+..+|..++..|+|++|+..|+++++.+|+++..                      .++...|.+..+|.++|.++.
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~   68 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALA   68 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHH
Confidence            4556666777777777777777777777776664332                      011111223447888888888


Q ss_pred             HcCChHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 039523           96 IKNKSKEAFIAFKEALKL-------KRNGWQLW----ENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLN  164 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~-------~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  164 (244)
                      .+|++++|+..+++++++       +|++..+|    ++.|.++..+|++++|+.+|+++++++|++......+......
T Consensus        69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~  148 (159)
T 2hr2_A           69 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  148 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            888888888888888888       99888888    9999999999999999999999999988866555555555444


Q ss_pred             hc
Q 039523          165 LE  166 (244)
Q Consensus       165 ~~  166 (244)
                      +.
T Consensus       149 ~~  150 (159)
T 2hr2_A          149 AI  150 (159)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=4.4e-18  Score=131.85  Aligned_cols=150  Identities=17%  Similarity=0.147  Sum_probs=134.2

Q ss_pred             CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHcc
Q 039523            1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMALN--------SLYPDGWFALGAAALKAR   64 (244)
Q Consensus         1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g   64 (244)
                      |+.+|++++..        +|....++..+|.++...|++++|+.++++++...        |....++..+|.++...|
T Consensus        88 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  167 (311)
T 3nf1_A           88 AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG  167 (311)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Confidence            46778888877        46678899999999999999999999999999874        555678999999999999


Q ss_pred             CHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------
Q 039523           65 DVEKALDVFTRAVQL--------DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL-----------------------  113 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------  113 (244)
                      ++++|+.++++++..        .|....++..+|.++...|++++|+.++++++..                       
T Consensus       168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  247 (311)
T 3nf1_A          168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER  247 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence            999999999999998        6777789999999999999999999999999974                       


Q ss_pred             --------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          114 --------------------------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       114 --------------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                                                .|....++..+|.++...|++++|..++++++++.|+
T Consensus       248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          248 EECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                                      4556788999999999999999999999999998875

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.76  E-value=7.8e-17  Score=106.79  Aligned_cols=114  Identities=24%  Similarity=0.214  Sum_probs=99.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      .+..++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678888888888999999999999999888888888888899888889999999999998888888888888888888


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      ...|++++|...++++++.+|+++.++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            8889999999989888888888888888877764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.76  E-value=1e-16  Score=125.28  Aligned_cols=168  Identities=9%  Similarity=0.019  Sum_probs=157.8

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc-c-CHHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKA-R-DVEKALDVFTRAV   77 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~   77 (244)
                      |++++++++.++|++..+|...+.++...| .+++++.++.+++..+|++..+|...+.++... + +++++++++.+++
T Consensus        73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            578899999999999999999999999999 599999999999999999999999999999998 8 9999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHH
Q 039523           78 QLDPENGEAWNIIACLHMIKNKSK--------EAFIAFKEALKLKRNGWQLWENYSHVALDVGN-------IGQALEAVQ  142 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~  142 (244)
                      ..+|.+..+|...+.+....|.++        ++++++.++++.+|.+..+|...+.+....++       ++++++++.
T Consensus       153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~  232 (349)
T 3q7a_A          153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYIL  232 (349)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            999999999999999999998888        99999999999999999999999999999987       789999999


Q ss_pred             HHHhhcCCchhhHHHHHHHHHHhccc
Q 039523          143 MVLNITNNKRIDTELLERIVLNLEGR  168 (244)
Q Consensus       143 ~al~~~p~~~~~~~~l~~~~~~~~~~  168 (244)
                      +++..+|++...+..+..+.......
T Consensus       233 ~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          233 KSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            99999999988888888777766543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=4.1e-17  Score=134.00  Aligned_cols=151  Identities=15%  Similarity=0.069  Sum_probs=93.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      |++.|+++++++|+++.++..+|..+..    .|++++|+..+++++..+|.++.++..+|.++...|++++|+..+.++
T Consensus       194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  273 (472)
T 4g1t_A          194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA  273 (472)
T ss_dssp             THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            3455555666666665555555544433    344556666666666666666666666666666666666666666666


Q ss_pred             HhcCCCcHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 039523           77 VQLDPENGEAWNIIACLHMIK-------------------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA  137 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A  137 (244)
                      ++.+|+++.++..+|.++...                   +.+++|+..+++++..+|.+..++..+|.++...|++++|
T Consensus       274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A  353 (472)
T 4g1t_A          274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA  353 (472)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred             HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHH
Confidence            666666666666666655432                   2245566666666666666666666777777777778888


Q ss_pred             HHHHHHHHhhcCCc
Q 039523          138 LEAVQMVLNITNNK  151 (244)
Q Consensus       138 ~~~~~~al~~~p~~  151 (244)
                      +.+|++++++.|+.
T Consensus       354 ~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          354 EYYFQKEFSKELTP  367 (472)
T ss_dssp             HHHHHHHHHSCCCH
T ss_pred             HHHHHHHHhcCCCC
Confidence            88888777777663

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.76  E-value=6.8e-18  Score=130.66  Aligned_cols=153  Identities=8%  Similarity=-0.013  Sum_probs=126.4

Q ss_pred             CchHHHHHHhhccCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHH
Q 039523            1 MMPAMKKLWKFQMIS------QLELRSLARSAYNR-GEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVE   67 (244)
Q Consensus         1 Ai~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~   67 (244)
                      |+.+|++++++.|..      +.++..+|.++... |++++|+.+|++++.+.|..      ..++..+|.++...|+++
T Consensus        96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            578899999997754      56899999999996 99999999999999998754      457889999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHH--HcCC
Q 039523           68 KALDVFTRAVQLDPENGE-------AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL-----WENYSHVAL--DVGN  133 (244)
Q Consensus        68 ~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-----~~~la~~~~--~~~~  133 (244)
                      +|+.+|++++...|++..       ++.++|.++..+|++++|+.+|++++.++|+....     +..++..+.  ..++
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~  255 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ  255 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence            999999999999987643       67899999999999999999999999999986543     445555554  4678


Q ss_pred             HHHHHHHHHHHHhhcCCchh
Q 039523          134 IGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus       134 ~~~A~~~~~~al~~~p~~~~  153 (244)
                      +++|+..|++++.++|....
T Consensus       256 ~~~A~~~~~~~~~l~~~~~~  275 (292)
T 1qqe_A          256 LSEHCKEFDNFMRLDKWKIT  275 (292)
T ss_dssp             HHHHHHHHTTSSCCCHHHHH
T ss_pred             HHHHHHHhccCCccHHHHHH
Confidence            99999999999988887433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=5.1e-17  Score=135.73  Aligned_cols=160  Identities=12%  Similarity=0.019  Sum_probs=143.2

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-hCCCChhHHHHHHHHHHHccCH
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYN-------RGEYE-------TSKILREAAMA-LNSLYPDGWFALGAAALKARDV   66 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~   66 (244)
                      +..|++++..+|.++.+|..+|..+..       .|+++       +|+..|+++++ ..|++..+|..+|.++...|++
T Consensus       258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~  337 (530)
T 2ooe_A          258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY  337 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence            458999999999999999999999986       79987       99999999997 7999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 039523           67 EKALDVFTRAVQLDPENG-EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV-ALDVGNIGQALEAVQMV  144 (244)
Q Consensus        67 ~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~a  144 (244)
                      ++|...|+++++.+|.++ .+|..++.++...|++++|...|+++++..|.....+...+.+ +...|++++|..+|+++
T Consensus       338 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a  417 (530)
T 2ooe_A          338 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG  417 (530)
T ss_dssp             HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            999999999999999886 6999999999999999999999999999999887777776665 34689999999999999


Q ss_pred             HhhcCCchhhHHHHHHH
Q 039523          145 LNITNNKRIDTELLERI  161 (244)
Q Consensus       145 l~~~p~~~~~~~~l~~~  161 (244)
                      ++..|+++..+..+..+
T Consensus       418 l~~~p~~~~~~~~~~~~  434 (530)
T 2ooe_A          418 LKKYGDIPEYVLAYIDY  434 (530)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHH
Confidence            99999876655544444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=5.5e-17  Score=133.25  Aligned_cols=162  Identities=14%  Similarity=0.085  Sum_probs=141.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc-----------------
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA-----------------   63 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------------   63 (244)
                      |+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...                 
T Consensus       232 a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~  311 (472)
T 4g1t_A          232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK  311 (472)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999988653                 


Q ss_pred             --cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHcCCHHHH
Q 039523           64 --RDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ---LWENYSHV-ALDVGNIGQA  137 (244)
Q Consensus        64 --g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~la~~-~~~~~~~~~A  137 (244)
                        +.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++...|++..   ++..+|.+ ....|++++|
T Consensus       312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  391 (472)
T 4g1t_A          312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKA  391 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence              34788999999999999999999999999999999999999999999999887643   35566654 4578999999


Q ss_pred             HHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          138 LEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       138 ~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      +.+|++++++.|+.......+..+.
T Consensus       392 i~~y~kal~i~~~~~~~~~~~~~l~  416 (472)
T 4g1t_A          392 IHHFIEGVKINQKSREKEKMKDKLQ  416 (472)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHH
Confidence            9999999999998665444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.76  E-value=1.7e-17  Score=111.48  Aligned_cols=99  Identities=15%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN   98 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~   98 (244)
                      ++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ChHHHHHHHHHHHhcCCCC
Q 039523           99 KSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~~p~~  117 (244)
                      ++++|+..++++++.+|++
T Consensus       100 ~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHhCcCC
Confidence            5555555555555555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.75  E-value=8.2e-17  Score=110.06  Aligned_cols=107  Identities=14%  Similarity=0.169  Sum_probs=102.2

Q ss_pred             hhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 039523           44 ALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN  123 (244)
Q Consensus        44 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  123 (244)
                      ..+|.++..++.+|.++...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          124 YSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       124 la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +|.++...|++++|+.+|++++++.|+
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            999999999999999999999999987

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.75  E-value=4.4e-18  Score=124.17  Aligned_cols=153  Identities=12%  Similarity=0.005  Sum_probs=123.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH----------
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENG----------   84 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----------   84 (244)
                      .+......+......|.++++.+.+.......+.....+..+|..++..|++++|+..|.+++...|.++          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   82 (198)
T 2fbn_A            3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK   82 (198)
T ss_dssp             -------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred             CcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence            3344455566777788888888888877777777788999999999999999999999999999999887          


Q ss_pred             ------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523           85 ------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus        85 ------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                            .++.++|.++...|++++|+.++++++..+|++..+++.+|.++...|++++|+.+|+++++++|++......+
T Consensus        83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  162 (198)
T 2fbn_A           83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  162 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence                  89999999999999999999999999999999999999999999999999999999999999999988777777


Q ss_pred             HHHHHHhcc
Q 039523          159 ERIVLNLEG  167 (244)
Q Consensus       159 ~~~~~~~~~  167 (244)
                      ..+...+.+
T Consensus       163 ~~~~~~~~~  171 (198)
T 2fbn_A          163 ELCVNKLKE  171 (198)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766665553

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.75  E-value=1.4e-17  Score=117.53  Aligned_cols=104  Identities=15%  Similarity=0.071  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------CCCChhHHHHHHHHHHHccCHHHHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMAL------------------NSLYPDGWFALGAAALKARDVEKALDVFTRA   76 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   76 (244)
                      .+..+..+|..++..|++++|+..|.+++..                  +|.+..++.++|.++...|++++|+..+.++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3567888888888888888888888888887                  3333344444444444444444444444444


Q ss_pred             HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523           77 VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW  118 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  118 (244)
                      +.++|+++.+++.+|.++..+|++++|+..|++++.++|++.
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            444444444444444444444444444444444444444444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.75  E-value=1.3e-17  Score=133.75  Aligned_cols=150  Identities=15%  Similarity=0.079  Sum_probs=132.2

Q ss_pred             CchHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------hhHHHHHHHHHHHccCHH
Q 039523            1 MMPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY-------PDGWFALGAAALKARDVE   67 (244)
Q Consensus         1 Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~   67 (244)
                      |+.+|++++++      .+..+.++..+|.++...|++++|+.++.+++...+..       ..++..+|.++...|+++
T Consensus       122 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  201 (383)
T 3ulq_A          122 AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE  201 (383)
T ss_dssp             HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHH
Confidence            56788999887      33467899999999999999999999999999985543       347899999999999999


Q ss_pred             HHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHcCCHH
Q 039523           68 KALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALK-----LK-RNGWQLWENYSHVALDVGNIG  135 (244)
Q Consensus        68 ~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~-p~~~~~~~~la~~~~~~~~~~  135 (244)
                      +|++++++++...+..      ..++.++|.++..+|++++|+.++++++.     .+ |....++.++|.++...|+++
T Consensus       202 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  281 (383)
T 3ulq_A          202 DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKID  281 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHH
Confidence            9999999999875533      25899999999999999999999999999     46 777899999999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 039523          136 QALEAVQMVLNITNN  150 (244)
Q Consensus       136 ~A~~~~~~al~~~p~  150 (244)
                      +|..++++++++.+.
T Consensus       282 ~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          282 KAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.75  E-value=4.2e-18  Score=129.87  Aligned_cols=133  Identities=16%  Similarity=0.044  Sum_probs=123.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           21 SLARSAYNRGEYETSKILREAAMALN----SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      .++......|++++|+..++++++..    |.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~   89 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ   89 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             ceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            33444456789999999999999984    45678999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523           97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                      .|++++|+.++++++..+|++..++..+|.++...|++++|+.+++++++..|+...
T Consensus        90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  146 (275)
T 1xnf_A           90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF  146 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999999999999999999999999999999999999999653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.75  E-value=2e-16  Score=123.11  Aligned_cols=163  Identities=10%  Similarity=0.052  Sum_probs=149.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC--HHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGE----------YETSKILREAAMALNSLYPDGWFALGAAALKARD--VEK   68 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~   68 (244)
                      |+.++.+++..+|++..+|...+.+....+.          +++++.++..++..+|.+..+|...+.++...|+  +++
T Consensus        49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~  128 (331)
T 3dss_A           49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR  128 (331)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHH
T ss_pred             HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHH
Confidence            5788999999999999999999999988776          7899999999999999999999999999999994  999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------CC
Q 039523           69 ALDVFTRAVQLDPENGEAWNIIACLHMIKNK-SKEAFIAFKEALKLKRNGWQLWENYSHVALDV--------------GN  133 (244)
Q Consensus        69 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--------------~~  133 (244)
                      ++.++.+++..+|.+..+|...+.+....|. ++++++++.+++..+|.+..+|...+.+....              +.
T Consensus       129 EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~  208 (331)
T 3dss_A          129 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV  208 (331)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHH
Confidence            9999999999999999999999999999999 59999999999999999999999999998887              46


Q ss_pred             HHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523          134 IGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       134 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      ++++++++.+++..+|++...+..+..+..
T Consensus       209 ~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          209 LLKELELVQNAFFTDPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            889999999999999998877765554444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.75  E-value=4.9e-17  Score=136.95  Aligned_cols=137  Identities=17%  Similarity=0.106  Sum_probs=110.4

Q ss_pred             cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 039523           29 RGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFK  108 (244)
Q Consensus        29 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  108 (244)
                      .|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++.+|+++.++..+|.++...|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523          109 EALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus       109 ~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      ++++.+|++..++.++|.++...|++++|+.+++++++.+|++......+.......
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999766555555554444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=3e-17  Score=111.20  Aligned_cols=102  Identities=22%  Similarity=0.199  Sum_probs=95.7

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHH
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLW  121 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~  121 (244)
                      .+.++..+|..+++.|++++|+.+|+++++++|+++.+|.++|.++..+|++++|+..++++++++|++       ..++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            355788999999999999999999999999999999999999999999999999999999999998865       3578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          122 ENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .++|.++..+|++++|+.+|++++...|+
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            99999999999999999999999999886

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=9.5e-17  Score=110.96  Aligned_cols=118  Identities=16%  Similarity=0.114  Sum_probs=93.0

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY---PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN   88 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~   88 (244)
                      +|.+...++.+|..++..|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            56677788888888888888888888888888888876   677778888888888888888888888888887778888


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039523           89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVAL  129 (244)
Q Consensus        89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  129 (244)
                      .+|.++...|++++|+.++++++..+|++..++..++.+..
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            88888888888888888888888888877777777766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=1.2e-16  Score=133.55  Aligned_cols=152  Identities=13%  Similarity=0.068  Sum_probs=140.4

Q ss_pred             CchHHHHHHh-hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            1 MMPAMKKLWK-FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP-DGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         1 Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |+..|++|++ ..|++..+|..+|..+...|++++|+..|+++++..|.++ .+|..+|.++.+.|++++|...|+++++
T Consensus       305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            4678999997 7999999999999999999999999999999999999886 6999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           79 LDPENGEAWNIIACL-HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      ..|.....+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++|...|++++...|.++
T Consensus       385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            999888888777665 34689999999999999999999999999999999999999999999999999876644

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.75  E-value=2e-17  Score=114.48  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=61.0

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc-
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL-   79 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-   79 (244)
                      |+..|+++++++|+++..                      +++...|.+..+|.++|.++...|++++|+.++++++.+ 
T Consensus        30 Ai~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A           30 AAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            578899999999884321                      001111112235555555555555555555555555555 


Q ss_pred             ------CCCcHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 039523           80 ------DPENGEAW----NIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL  120 (244)
Q Consensus        80 ------~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  120 (244)
                            +|+++.+|    +++|.++..+|++++|+..|+++++++|++..+
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence                  77777777    777777777777777777777777777765433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.74  E-value=1.2e-15  Score=116.55  Aligned_cols=140  Identities=16%  Similarity=0.173  Sum_probs=114.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDV   72 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~   72 (244)
                      |+.+|+++++  |+++.+++.+|.++..    .+++++|+.+|+++++.+  ++.+++.+|.++..    .+++++|+.+
T Consensus        25 A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~  100 (273)
T 1ouv_A           25 AKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQY  100 (273)
T ss_dssp             HHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence            4567777776  6778888888888888    888888888888888775  77888888888888    8888888888


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 039523           73 FTRAVQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMV  144 (244)
Q Consensus        73 ~~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a  144 (244)
                      |++++..+  ++.+++.+|.++..    .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+|+++
T Consensus       101 ~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a  176 (273)
T 1ouv_A          101 YSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKA  176 (273)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            88888763  77888888888888    888888888888888865  57778888888887    88888888888888


Q ss_pred             Hhhc
Q 039523          145 LNIT  148 (244)
Q Consensus       145 l~~~  148 (244)
                      ++..
T Consensus       177 ~~~~  180 (273)
T 1ouv_A          177 CDLK  180 (273)
T ss_dssp             HHTT
T ss_pred             HHCC
Confidence            8764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.74  E-value=3.5e-17  Score=109.88  Aligned_cols=101  Identities=21%  Similarity=0.223  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD  130 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  130 (244)
                      ..++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhcCCc
Q 039523          131 VGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus       131 ~~~~~~A~~~~~~al~~~p~~  151 (244)
                      .|++++|+..++++++.+|+.
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHHHHHhCcCC
Confidence            999999999999999999974

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.74  E-value=2.4e-16  Score=116.29  Aligned_cols=154  Identities=11%  Similarity=0.016  Sum_probs=135.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc----CHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR----DVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~a   76 (244)
                      |+.+|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.++.. +    ++++|+.+|+++
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            67889999875  78999999999999999999999999999875  588999999999998 7    999999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 039523           77 VQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKR--NGWQLWENYSHVALD----VGNIGQALEAVQMVLN  146 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~  146 (244)
                      ..  +.++.+++++|.++..    .+++++|+.+|+++.+..|  +++.+++++|.+|..    .+++++|+.+|+++.+
T Consensus        80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            65  5789999999999988    8999999999999999988  358999999999999    8899999999999998


Q ss_pred             hcCCchhhHHHHHHHH
Q 039523          147 ITNNKRIDTELLERIV  162 (244)
Q Consensus       147 ~~p~~~~~~~~l~~~~  162 (244)
                      . |+++.....+..+.
T Consensus       158 ~-~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A          158 L-SRTGYAEYWAGMMF  172 (212)
T ss_dssp             T-SCTTHHHHHHHHHH
T ss_pred             c-CCCHHHHHHHHHHH
Confidence            8 44444444444443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=3.1e-17  Score=127.03  Aligned_cols=150  Identities=19%  Similarity=0.171  Sum_probs=134.6

Q ss_pred             CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChhHHHHHHHHHHHcc
Q 039523            1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMAL--------NSLYPDGWFALGAAALKAR   64 (244)
Q Consensus         1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g   64 (244)
                      |+.+|+++++.        +|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|
T Consensus        46 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (311)
T 3nf1_A           46 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG  125 (311)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC
Confidence            46788888884        6777899999999999999999999999999987        3555678999999999999


Q ss_pred             CHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH
Q 039523           65 DVEKALDVFTRAVQLD--------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKL--------KRNGWQLWENYSHVA  128 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~  128 (244)
                      ++++|+.+++++++..        |....++..+|.++...|++++|+.++++++..        .|....++..+|.++
T Consensus       126 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  205 (311)
T 3nf1_A          126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY  205 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999874        556778999999999999999999999999998        677788899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhcCC
Q 039523          129 LDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ...|++++|+.+++++++..|+
T Consensus       206 ~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          206 LKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.73  E-value=1.5e-18  Score=136.99  Aligned_cols=145  Identities=10%  Similarity=0.010  Sum_probs=97.3

Q ss_pred             HHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----------------hHHHHHHHHHHHccCHHHHH
Q 039523            8 LWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP-----------------DGWFALGAAALKARDVEKAL   70 (244)
Q Consensus         8 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~   70 (244)
                      .++..+..+..+..+|..++..|++++|+..|++++...|++.                 .++.++|.++...|++++|+
T Consensus       171 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~  250 (338)
T 2if4_A          171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI  250 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3444566788899999999999999999999999999999876                 38999999999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcC
Q 039523           71 DVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV-ALDVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus        71 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p  149 (244)
                      ..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+ ....+..+.+...|.+++...|
T Consensus       251 ~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p  330 (338)
T 2if4_A          251 GHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD  330 (338)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999999999999999999999999988 4455677888899999999888


Q ss_pred             Cch
Q 039523          150 NKR  152 (244)
Q Consensus       150 ~~~  152 (244)
                      +++
T Consensus       331 ~~~  333 (338)
T 2if4_A          331 EGG  333 (338)
T ss_dssp             ---
T ss_pred             CCC
Confidence            754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.73  E-value=2.2e-16  Score=106.94  Aligned_cols=117  Identities=23%  Similarity=0.432  Sum_probs=112.3

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|...+++++...
T Consensus        20 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           20 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      |.++.++..+|.++...|++++|...+++++..+|++
T Consensus       100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999998863

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.73  E-value=2.1e-15  Score=115.25  Aligned_cols=141  Identities=21%  Similarity=0.255  Sum_probs=130.1

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDV   72 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~   72 (244)
                      |+.+|+++++.+  ++.++..+|.++..    .+++++|+.+|++++..+  ++.++..+|.++..    .+++++|+.+
T Consensus        61 A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~  136 (273)
T 1ouv_A           61 AASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEY  136 (273)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence            467888988874  89999999999999    999999999999999874  88999999999999    9999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 039523           73 FTRAVQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMV  144 (244)
Q Consensus        73 ~~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a  144 (244)
                      |+++++.+  ++.++..+|.++..    .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+++++
T Consensus       137 ~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a  212 (273)
T 1ouv_A          137 FTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKA  212 (273)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence            99999976  68889999999999    999999999999999874  67899999999999    99999999999999


Q ss_pred             HhhcC
Q 039523          145 LNITN  149 (244)
Q Consensus       145 l~~~p  149 (244)
                      ++..|
T Consensus       213 ~~~~~  217 (273)
T 1ouv_A          213 CELEN  217 (273)
T ss_dssp             HHTTC
T ss_pred             HhCCC
Confidence            99865

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.73  E-value=1.4e-16  Score=112.36  Aligned_cols=117  Identities=13%  Similarity=0.104  Sum_probs=106.2

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhc------------------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQL------------------DPENGEAWNIIACLHMIKNKSKEAFIAFKEAL  111 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  111 (244)
                      ...+...|..++..|++++|+..|.+++..                  +|.+..++.++|.++..+|++++|+..+.+++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            467889999999999999999999999999                  77777899999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch-hhHHHHHHHHHHhc
Q 039523          112 KLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR-IDTELLERIVLNLE  166 (244)
Q Consensus       112 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~  166 (244)
                      .++|+++.+++.+|.++..+|++++|+..|+++++++|++. .....+..+...+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999977 44555555555444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.73  E-value=7.4e-16  Score=119.92  Aligned_cols=164  Identities=10%  Similarity=0.017  Sum_probs=145.6

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC-HHHHHHHHHHHHh
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRG--EYETSKILREAAMALNSLYPDGWFALGAAALKARD-VEKALDVFTRAVQ   78 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~   78 (244)
                      +.++++++..+|.+..+|...+.++...+  .+++++.++.++++.+|.|..+|...+.+....|. ++++++++.+++.
T Consensus        94 L~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~  173 (331)
T 3dss_A           94 LGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT  173 (331)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            56788999999999999999999999998  49999999999999999999999999999999999 6999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CC
Q 039523           79 LDPENGEAWNIIACLHMIK--------------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-----------GN  133 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----------~~  133 (244)
                      .+|.+..+|..++.++...              +.++++++++.+++..+|++..+|+.+..++...           +.
T Consensus       174 ~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~  253 (331)
T 3dss_A          174 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV  253 (331)
T ss_dssp             HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHH
Confidence            9999999999999999887              5689999999999999999999998776666555           45


Q ss_pred             HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523          134 IGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus       134 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      ++++++.+.++++..|++.+....+..+...+
T Consensus       254 l~~el~~~~elle~~pd~~w~l~~~~~~~~~~  285 (331)
T 3dss_A          254 LQSELESCKELQELEPENKWCLLTIILLMRAL  285 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccchHHHHHHHHHHhh
Confidence            78999999999999999866554444444333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.73  E-value=9.8e-19  Score=144.15  Aligned_cols=137  Identities=19%  Similarity=0.187  Sum_probs=124.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL   93 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   93 (244)
                      ..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.++++++.+|+++.+++++|.+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34556778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhcCC
Q 039523           94 HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV--ALDVGNIGQALEAVQ-----------MVLNITNN  150 (244)
Q Consensus        94 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~al~~~p~  150 (244)
                      +..+|++++|+..|+++++.+|++..++..++.+  +...|++++|+..++           +++.+.|+
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            9999999999999999999999999999999988  888999999999999           77777766

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.73  E-value=3.2e-16  Score=105.97  Aligned_cols=113  Identities=14%  Similarity=0.084  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYP---DGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIA   91 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~   91 (244)
                      .++.+|..++..|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            355666677777777777777777777666666   566667777777777777777777777666666   66666666


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523           92 CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD  130 (244)
Q Consensus        92 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  130 (244)
                      .++...|++++|+..|++++...|++..+......+...
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            666666777777766666666666666555544444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=3.4e-16  Score=106.07  Aligned_cols=117  Identities=13%  Similarity=0.130  Sum_probs=108.6

Q ss_pred             CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523           46 NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS  125 (244)
Q Consensus        46 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la  125 (244)
                      .|.+..+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|++..++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          126 HVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       126 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      .++...|++++|+.+++++++.+|+.......+..+.
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  128 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM  128 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999999999999998766655555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.72  E-value=9e-17  Score=105.56  Aligned_cols=105  Identities=23%  Similarity=0.210  Sum_probs=54.5

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE--NGEAWNI   89 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~   89 (244)
                      +|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++.+|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555  5555555


Q ss_pred             HHHHHHHc-CChHHHHHHHHHHHhcCCC
Q 039523           90 IACLHMIK-NKSKEAFIAFKEALKLKRN  116 (244)
Q Consensus        90 l~~~~~~~-~~~~~A~~~~~~a~~~~p~  116 (244)
                      +|.++... |++++|+.++++++...|+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            55555555 5555555555555554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.72  E-value=7.5e-16  Score=101.97  Aligned_cols=113  Identities=17%  Similarity=0.151  Sum_probs=105.7

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      .+..++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523          129 LDVGNIGQALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                      ...|++++|..+++++++.+|++......+..+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            999999999999999999999977666555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.72  E-value=7.2e-16  Score=119.23  Aligned_cols=147  Identities=10%  Similarity=-0.017  Sum_probs=115.0

Q ss_pred             chHHHHHHhhccCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHH
Q 039523            2 MPAMKKLWKFQMISQ------LELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKA   69 (244)
Q Consensus         2 i~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A   69 (244)
                      ++.++++++..|...      ..++.+|..+...|++++|+..+++++...+..      ..++..+|.++...|++++|
T Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A  174 (293)
T 2qfc_A           95 YNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKG  174 (293)
T ss_dssp             HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            456677777655543      345678888888889999999999998765433      45788889999999999999


Q ss_pred             HHHHHHHH---hcCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHH
Q 039523           70 LDVFTRAV---QLDPENG----EAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVALDVGNIGQ  136 (244)
Q Consensus        70 ~~~~~~a~---~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~  136 (244)
                      +.+|++++   +..|++.    .+++++|.++..+|++++|+.++++++.+.++      ...++.++|.++...|++++
T Consensus       175 ~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~  254 (293)
T 2qfc_A          175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA  254 (293)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence            99999888   4455533    57888999999999999999999988877542      26788889999999999999


Q ss_pred             H-HHHHHHHHhhc
Q 039523          137 A-LEAVQMVLNIT  148 (244)
Q Consensus       137 A-~~~~~~al~~~  148 (244)
                      | ..++++++.+.
T Consensus       255 Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          255 EIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8 77788888764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.72  E-value=1.1e-16  Score=124.73  Aligned_cols=150  Identities=11%  Similarity=-0.004  Sum_probs=129.2

Q ss_pred             CchHHHHHHhhccCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHH
Q 039523            1 MMPAMKKLWKFQMIS------QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEK   68 (244)
Q Consensus         1 Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~   68 (244)
                      |+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++.. |++++
T Consensus        55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~  133 (307)
T 2ifu_A           55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK  133 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence            467788888885532      5688999999999999999999999999885432      4578899999999 99999


Q ss_pred             HHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHH
Q 039523           69 ALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQ  136 (244)
Q Consensus        69 A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~  136 (244)
                      |+.+|++++.+.|..      ..++.++|.++..+|++++|+.+|++++.+.|.+      ...+..+|.++...|++++
T Consensus       134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  213 (307)
T 2ifu_A          134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA  213 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999987643      5688999999999999999999999999986643      3478889999999999999


Q ss_pred             HHHHHHHHHhhcCCch
Q 039523          137 ALEAVQMVLNITNNKR  152 (244)
Q Consensus       137 A~~~~~~al~~~p~~~  152 (244)
                      |+.+|++++ ++|+..
T Consensus       214 A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          214 AQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHh-CCCCCC
Confidence            999999999 998743

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.71  E-value=2.5e-16  Score=121.79  Aligned_cols=148  Identities=9%  Similarity=-0.013  Sum_probs=119.6

Q ss_pred             CchHHHHHHhhccCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHH
Q 039523            1 MMPAMKKLWKFQMISQL------ELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEK   68 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~   68 (244)
                      |+..++++++..+..+.      .+..+|..+...|++++|+.++++++...+...      .++..+|.++...|++++
T Consensus        94 a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~  173 (293)
T 3u3w_A           94 IYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKK  173 (293)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHH
Confidence            35677777776665544      334588888888999999999999998654332      368899999999999999


Q ss_pred             HHHHHHHHHhc-------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcC-CH
Q 039523           69 ALDVFTRAVQL-------DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVG-NI  134 (244)
Q Consensus        69 A~~~~~~a~~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~-~~  134 (244)
                      |+.+|+++++.       .+....+++++|.++..+|++++|+.++++++.+.+..      ..++.++|.++..+| ++
T Consensus       174 A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  253 (293)
T 3u3w_A          174 GIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE  253 (293)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcH
Confidence            99999999842       22334588999999999999999999999999875433      788999999999999 46


Q ss_pred             HHHHHHHHHHHhhc
Q 039523          135 GQALEAVQMVLNIT  148 (244)
Q Consensus       135 ~~A~~~~~~al~~~  148 (244)
                      ++|+.++++++.+.
T Consensus       254 ~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          254 AEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.71  E-value=1.3e-16  Score=104.74  Aligned_cols=107  Identities=17%  Similarity=0.282  Sum_probs=103.4

Q ss_pred             hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHH
Q 039523           45 LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--GWQLWE  122 (244)
Q Consensus        45 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~  122 (244)
                      ++|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368889999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHhhcCCc
Q 039523          123 NYSHVALDV-GNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus       123 ~la~~~~~~-~~~~~A~~~~~~al~~~p~~  151 (244)
                      .+|.++... |++++|+.++++++...|+.
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            999999999 99999999999999999874

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.71  E-value=3e-16  Score=125.65  Aligned_cols=150  Identities=14%  Similarity=0.013  Sum_probs=131.1

Q ss_pred             CchHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------hhHHHHHHHHHHHccCHH
Q 039523            1 MMPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY-------PDGWFALGAAALKARDVE   67 (244)
Q Consensus         1 Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~   67 (244)
                      |+..|+++++.      .|..+.++..+|.++...|+++.|+.++++++...+..       ..++..+|.++...|+++
T Consensus       120 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~  199 (378)
T 3q15_A          120 AIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD  199 (378)
T ss_dssp             HHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH
Confidence            56788899876      23457789999999999999999999999999875432       447889999999999999


Q ss_pred             HHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCCHHH
Q 039523           68 KALDVFTRAVQLDP------ENGEAWNIIACLHMIKNKSKEAFIAFKEALK-----LKRNGWQLWENYSHVALDVGNIGQ  136 (244)
Q Consensus        68 ~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~la~~~~~~~~~~~  136 (244)
                      +|++++++++.+.+      ....++.++|.++..+|++++|+.++++++.     .+|....++..+|.++...|++++
T Consensus       200 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  279 (378)
T 3q15_A          200 KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK  279 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH
Confidence            99999999998643      2346789999999999999999999999999     778888999999999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 039523          137 ALEAVQMVLNITNN  150 (244)
Q Consensus       137 A~~~~~~al~~~p~  150 (244)
                      |..++++++++.+.
T Consensus       280 A~~~~~~al~~~~~  293 (378)
T 3q15_A          280 AFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.2e-15  Score=105.30  Aligned_cols=117  Identities=18%  Similarity=0.160  Sum_probs=109.0

Q ss_pred             hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523           45 LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW  121 (244)
Q Consensus        45 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  121 (244)
                      ..|.+...+..+|..+...|++++|+..|+++++.+|++   ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            456788899999999999999999999999999999998   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523          122 ENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus       122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                      +.+|.++...|++++|+.+|+++++++|++......+..+
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            9999999999999999999999999999977666555554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.71  E-value=2.1e-16  Score=106.66  Aligned_cols=117  Identities=17%  Similarity=0.211  Sum_probs=87.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc-------HHH
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN-------GEA   86 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~   86 (244)
                      ..+..+..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3456677778888888888888888888888887777777788888888888888888888877777655       677


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                      ++.+|.++...|++++|+..|++++...| +...+..++.+....
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777 466666666655443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.71  E-value=6.3e-16  Score=104.21  Aligned_cols=120  Identities=14%  Similarity=0.132  Sum_probs=110.0

Q ss_pred             CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523           46 NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS  125 (244)
Q Consensus        46 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la  125 (244)
                      +|.++..+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523          126 HVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus       126 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      .++...|++++|+.+++++++..|++......+.......
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            9999999999999999999999998776666555554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.70  E-value=7.7e-17  Score=130.00  Aligned_cols=150  Identities=17%  Similarity=0.121  Sum_probs=132.4

Q ss_pred             CchHHHHHHhhccCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChhHHHHHHHHHHHccCHHHHH
Q 039523            1 MMPAMKKLWKFQMISQ----LELRSLARSAYNRGEYETSKILREAAMAL------NSLYPDGWFALGAAALKARDVEKAL   70 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~   70 (244)
                      |+.+|+++++.+|+++    .++..+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|+
T Consensus        67 A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  146 (411)
T 4a1s_A           67 GVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAA  146 (411)
T ss_dssp             HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHH
Confidence            5778999999999987    58899999999999999999999999987      4666788999999999999999999


Q ss_pred             HHHHHHHhc------CCCcHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHhcC------CCCHHHH
Q 039523           71 DVFTRAVQL------DPENGEAWNIIACLHMIKNK-----------------SKEAFIAFKEALKLK------RNGWQLW  121 (244)
Q Consensus        71 ~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~a~~~~------p~~~~~~  121 (244)
                      .++++++..      .|....++..+|.++...|+                 +++|+.++++++.+.      +....++
T Consensus       147 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  226 (411)
T 4a1s_A          147 ICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRAC  226 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999988      55667789999999999999                 999999999988763      3345688


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          122 ENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ..+|.++...|++++|+.++++++++.|.
T Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al~~~~~  255 (411)
T 4a1s_A          227 GNLGNTYYLLGDFQAAIEHHQERLRIARE  255 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.70  E-value=1.1e-15  Score=103.21  Aligned_cols=112  Identities=14%  Similarity=0.063  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHH
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENG---EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLWENY  124 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l  124 (244)
                      .+++.+|.++...|++++|+..++++++.+|+++   .+++.+|.++...|++++|+..|++++...|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4578899999999999999999999999999988   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      |.++...|++++|+..|+++++..|+..........+.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            99999999999999999999999999776555444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.70  E-value=3e-15  Score=99.98  Aligned_cols=117  Identities=26%  Similarity=0.441  Sum_probs=106.3

Q ss_pred             CCCC-hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523           46 NSLY-PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY  124 (244)
Q Consensus        46 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  124 (244)
                      +|.. ..++..+|.++...|++++|++.+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4555 678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          125 SHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      |.++...|++++|..+++++++..|+.......+..+.
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999776655555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.69  E-value=7.7e-16  Score=113.16  Aligned_cols=113  Identities=12%  Similarity=0.018  Sum_probs=104.9

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      +..|++++  +| ++.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++..|
T Consensus        26 ~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  102 (213)
T 1hh8_A           26 LDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  102 (213)
T ss_dssp             HHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence            45566553  33 7899999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CcH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           82 ENG----------------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        82 ~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      .+.                .+++.+|.++...|++++|+..++++++..|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            766                999999999999999999999999999999986

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.69  E-value=2.1e-16  Score=126.85  Aligned_cols=150  Identities=13%  Similarity=0.171  Sum_probs=131.3

Q ss_pred             CchHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh------HHHHHHHHHHHccCHHH
Q 039523            1 MMPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPD------GWFALGAAALKARDVEK   68 (244)
Q Consensus         1 Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~   68 (244)
                      |+..|++++.+      .|....++..+|.++...|++++|+..+++++...+....      ++..+|.++...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            35567777766      4455678999999999999999999999999998765544      89999999999999999


Q ss_pred             HHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHH
Q 039523           69 ALDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQ  136 (244)
Q Consensus        69 A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~  136 (244)
                      |+.++++++...|..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999887655      6788999999999999999999999999885543      6789999999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 039523          137 ALEAVQMVLNITNN  150 (244)
Q Consensus       137 A~~~~~~al~~~p~  150 (244)
                      |+.++++++++.+.
T Consensus       326 A~~~~~~al~~~~~  339 (406)
T 3sf4_A          326 AMHFAEKHLEISRE  339 (406)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.69  E-value=5.2e-16  Score=123.83  Aligned_cols=125  Identities=16%  Similarity=0.170  Sum_probs=113.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMA----------------LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      .+..+..+|..++..|++++|+..|+++++                .+|.+..++.++|.++...|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            356789999999999999999999999998                6777788899999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039523           79 LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALE  139 (244)
Q Consensus        79 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~  139 (244)
                      .+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988888877754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.69  E-value=2.5e-17  Score=135.12  Aligned_cols=139  Identities=12%  Similarity=0.004  Sum_probs=122.5

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHH
Q 039523           28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---------------GEAWNIIAC   92 (244)
Q Consensus        28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~   92 (244)
                      ..+++++|+..++.++...|.....+..+|..++..|++++|+..|+++++++|.+               ..+|+++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34566778888888888889899999999999999999999999999999999988               689999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523           93 LHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus        93 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ++..+|++++|+..|.+++.++|++..+++++|.++..+|++++|+.+|+++++++|++......+..+...+.
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK  399 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997766666655554443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.68  E-value=7.7e-16  Score=116.78  Aligned_cols=130  Identities=15%  Similarity=-0.033  Sum_probs=107.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCh
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN--GEAWNIIACLHMIKNKS  100 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~  100 (244)
                      +..+...|++++|...|...+...|++. +.+.+|.++.+.|++++|+..++++....+..  ..+++.+|.++..+|++
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~  187 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF  187 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence            3566777888888888888888888777 88888888899999999999888776653221  35889999999999999


Q ss_pred             HHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523          101 KEAFIAFKEALKLK--RN-GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID  154 (244)
Q Consensus       101 ~~A~~~~~~a~~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  154 (244)
                      ++|+.+|++++...  |. ...+++.+|.++..+|+.++|...|++++..+|+ ...
T Consensus       188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~  243 (282)
T 4f3v_A          188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV  243 (282)
T ss_dssp             HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred             HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence            99999999998654  55 5678999999999999999999999999999997 443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.68  E-value=1.6e-16  Score=127.47  Aligned_cols=150  Identities=15%  Similarity=0.109  Sum_probs=128.3

Q ss_pred             CchHHHHHHhhccCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCChhHHHHHHHHHHHccCHHHHH
Q 039523            1 MMPAMKKLWKFQMISQ----LELRSLARSAYNRGEYETSKILREAAMALN------SLYPDGWFALGAAALKARDVEKAL   70 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~   70 (244)
                      |+.+|+++++..|.++    .++..+|.++...|++++|+..+++++...      |....++..+|.++...|++++|+
T Consensus        28 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  107 (406)
T 3sf4_A           28 GVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAI  107 (406)
T ss_dssp             HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            5678999999999884    678899999999999999999999998773      344668889999999999999999


Q ss_pred             HHHHHHHhcCCCc------HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhc------CCCCH
Q 039523           71 DVFTRAVQLDPEN------GEAWNIIACLHMIKNK--------------------SKEAFIAFKEALKL------KRNGW  118 (244)
Q Consensus        71 ~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~a~~~------~p~~~  118 (244)
                      .++++++...|..      ..++..+|.++...|+                    +++|+..+.+++.+      .|...
T Consensus       108 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~  187 (406)
T 3sf4_A          108 VCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQG  187 (406)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence            9999999886643      4588899999999999                    99999999998876      33346


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          119 QLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .++..+|.++...|++++|+.++++++++.|.
T Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (406)
T 3sf4_A          188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE  219 (406)
T ss_dssp             HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            67889999999999999999999999988665

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.68  E-value=1.2e-15  Score=117.94  Aligned_cols=155  Identities=6%  Similarity=0.010  Sum_probs=141.7

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCChhHHHHHHHHHHHccC------HHHHHHHH
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYE--TSKILREAAMALNSLYPDGWFALGAAALKARD------VEKALDVF   73 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~   73 (244)
                      +.+++++++.+|.+..+|...+.+....|.++  +++.++.++++.+|.|..+|...+.+....|.      ++++++++
T Consensus       130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~  209 (306)
T 3dra_A          130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV  209 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence            67899999999999999999999999999999  99999999999999999999999999999988      99999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc
Q 039523           74 TRAVQLDPENGEAWNIIACLHMIKNKSKE-AFIAFKEALKLK---RNGWQLWENYSHVALDVGNIGQALEAVQMVLN-IT  148 (244)
Q Consensus        74 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~a~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~  148 (244)
                      .+++..+|++..+|+.++.++...|+..+ ...++.+++...   |.++.++..++.++...|+.++|+++++.+.+ .+
T Consensus       210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D  289 (306)
T 3dra_A          210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN  289 (306)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999998655 445677777766   88999999999999999999999999999996 79


Q ss_pred             CCchhhHH
Q 039523          149 NNKRIDTE  156 (244)
Q Consensus       149 p~~~~~~~  156 (244)
                      |.....+.
T Consensus       290 pir~~yW~  297 (306)
T 3dra_A          290 PIRSNFWD  297 (306)
T ss_dssp             GGGHHHHH
T ss_pred             hHHHHHHH
Confidence            88554444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=2.4e-15  Score=110.93  Aligned_cols=143  Identities=16%  Similarity=0.019  Sum_probs=128.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRG----EYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDV   72 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~   72 (244)
                      |+.+|+++++.  +++.+++.+|.+|.. +    ++++|+.+|+++..  +.++.+++.+|.++..    .+++++|+++
T Consensus        37 A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  111 (212)
T 3rjv_A           37 AEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITL  111 (212)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence            46788888764  689999999999998 7    99999999999965  5689999999999998    8999999999


Q ss_pred             HHHHHhcCC--CcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHH
Q 039523           73 FTRAVQLDP--ENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV-G-----NIGQALEA  140 (244)
Q Consensus        73 ~~~a~~~~p--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-~-----~~~~A~~~  140 (244)
                      |+++....|  .++.+++++|.++..    .+++++|+.+|++++.. |.++.+++++|.+|..- |     ++++|+.+
T Consensus       112 ~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~  190 (212)
T 3rjv_A          112 LQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHW  190 (212)
T ss_dssp             HHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHH
T ss_pred             HHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence            999999988  459999999999999    88999999999999998 66788999999999864 3     89999999


Q ss_pred             HHHHHhhcC
Q 039523          141 VQMVLNITN  149 (244)
Q Consensus       141 ~~~al~~~p  149 (244)
                      |+++.+...
T Consensus       191 ~~~A~~~g~  199 (212)
T 3rjv_A          191 LNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHcCC
Confidence            999998753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.67  E-value=3e-16  Score=122.38  Aligned_cols=150  Identities=15%  Similarity=0.118  Sum_probs=130.6

Q ss_pred             CchHHHHHHhhccCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChhHHHHHHHHHHHccCHHHHH
Q 039523            1 MMPAMKKLWKFQMIS----QLELRSLARSAYNRGEYETSKILREAAMAL------NSLYPDGWFALGAAALKARDVEKAL   70 (244)
Q Consensus         1 Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~   70 (244)
                      |+.+|+++++.+|++    ..++..+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|+
T Consensus        24 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  103 (338)
T 3ro2_A           24 GVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAI  103 (338)
T ss_dssp             HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHH
Confidence            578899999999998    478889999999999999999999999887      3445678899999999999999999


Q ss_pred             HHHHHHHhcCCCc------HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhc------CCCCH
Q 039523           71 DVFTRAVQLDPEN------GEAWNIIACLHMIKNK--------------------SKEAFIAFKEALKL------KRNGW  118 (244)
Q Consensus        71 ~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~a~~~------~p~~~  118 (244)
                      ..+++++...|..      ..++..+|.++...|+                    +++|+..+++++..      .+...
T Consensus       104 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~  183 (338)
T 3ro2_A          104 VCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG  183 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999876533      3488999999999999                    99999999998876      23345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          119 QLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .++..+|.++...|++++|+.++++++++.+.
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  215 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE  215 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            68899999999999999999999999988665

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.66  E-value=2.6e-15  Score=101.26  Aligned_cols=117  Identities=16%  Similarity=0.112  Sum_probs=105.2

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHH
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLW  121 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~  121 (244)
                      .+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|++       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999998877       8999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          122 ENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ..+|.++...|++++|+.+|+++++..|+ +.....+..+...+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999885 545555555554443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.65  E-value=4.9e-16  Score=121.17  Aligned_cols=149  Identities=13%  Similarity=0.165  Sum_probs=126.4

Q ss_pred             chHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHH
Q 039523            2 MPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKA   69 (244)
Q Consensus         2 i~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A   69 (244)
                      +..+++++..      .|....++..+|.++...|++++|+..+++++...+...      .++..+|.++...|++++|
T Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4566666665      344567899999999999999999999999998865433      3889999999999999999


Q ss_pred             HHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHH
Q 039523           70 LDVFTRAVQLDPEN------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQA  137 (244)
Q Consensus        70 ~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A  137 (244)
                      ...+++++...+..      ..++..+|.++...|++++|..++++++...+..      ..++..+|.++...|++++|
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            99999999886654      6788999999999999999999999999885532      55888999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 039523          138 LEAVQMVLNITNN  150 (244)
Q Consensus       138 ~~~~~~al~~~p~  150 (244)
                      ..++++++++.+.
T Consensus       323 ~~~~~~a~~~~~~  335 (338)
T 3ro2_A          323 MHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.65  E-value=1.3e-14  Score=102.04  Aligned_cols=106  Identities=15%  Similarity=0.207  Sum_probs=101.4

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVAL  129 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  129 (244)
                      +..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhcCCchhhH
Q 039523          130 DVGNIGQALEAVQMVLNITNNKRIDT  155 (244)
Q Consensus       130 ~~~~~~~A~~~~~~al~~~p~~~~~~  155 (244)
                      ..|++++|+.+++++++..|++....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~  118 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAK  118 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999866544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.65  E-value=2.8e-15  Score=109.09  Aligned_cols=139  Identities=12%  Similarity=0.035  Sum_probs=120.0

Q ss_pred             cc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc---CC
Q 039523           12 QM-ISQLELRSLARSAYNRGEYETSKILREAAMAL------NSLYPDGWFALGAAALKARDVEKALDVFTRAVQL---DP   81 (244)
Q Consensus        12 ~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p   81 (244)
                      +| ..+.++..+|.++...|++++|+..+++++..      .+....++..+|.++...|++++|...+++++..   .+
T Consensus        21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  100 (203)
T 3gw4_A           21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP  100 (203)
T ss_dssp             STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            45 56889999999999999999999999999984      3445678999999999999999999999999987   44


Q ss_pred             C----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           82 E----NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR--NG----WQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        82 ~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +    ...++.++|.++...|++++|..++++++...+  .+    ..++..+|.++...|++++|..++++++++...
T Consensus       101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            2    346789999999999999999999999987632  22    345689999999999999999999999988654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.65  E-value=8.3e-16  Score=106.14  Aligned_cols=90  Identities=20%  Similarity=0.164  Sum_probs=60.3

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 039523           28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVE----------KALDVFTRAVQLDPENGEAWNIIACLHMIK   97 (244)
Q Consensus        28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~----------~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   97 (244)
                      +.+.|++|+..++++++.+|+++.+|.++|.++...++++          +|+..|+++++++|++..+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            4456777788888888888888888877777777776653          666666666666666666666666666655


Q ss_pred             C-----------ChHHHHHHHHHHHhcCCCC
Q 039523           98 N-----------KSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        98 ~-----------~~~~A~~~~~~a~~~~p~~  117 (244)
                      |           ++++|+.+|+++++++|++
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            4           4555555555555555544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.65  E-value=3.6e-16  Score=126.11  Aligned_cols=150  Identities=15%  Similarity=0.171  Sum_probs=131.1

Q ss_pred             CchHHHHHHhh------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChhHHHHHHHHHHHccC---
Q 039523            1 MMPAMKKLWKF------QMISQLELRSLARSAYNRGEYETSKILREAAMAL------NSLYPDGWFALGAAALKARD---   65 (244)
Q Consensus         1 Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~---   65 (244)
                      |+.+|+++++.      .|....++..+|.++...|++++|+..+++++..      .+....++..+|.++...|+   
T Consensus       105 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  184 (411)
T 4a1s_A          105 AMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG  184 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence            46788888887      6778899999999999999999999999999988      45566789999999999999   


Q ss_pred             --------------HHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HH
Q 039523           66 --------------VEKALDVFTRAVQLD------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQ  119 (244)
Q Consensus        66 --------------~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~  119 (244)
                                    +++|++++++++.+.      +....++..+|.++...|++++|+.++++++...+..      ..
T Consensus       185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (411)
T 4a1s_A          185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR  264 (411)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence                          999999999988764      2345688999999999999999999999999987643      23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          120 LWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       120 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ++..+|.++...|++++|+.++++++++.+.
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  295 (411)
T 4a1s_A          265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVE  295 (411)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999998775

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.65  E-value=2.5e-15  Score=104.98  Aligned_cols=136  Identities=14%  Similarity=0.180  Sum_probs=118.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc-----
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKALDVFTRAVQLDPEN-----   83 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----   83 (244)
                      ...++..+|.++...|++++|+..+++++...+...      .++..+|.++...|++++|...+++++...+..     
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            457889999999999999999999999998865432      478899999999999999999999999875532     


Q ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           84 -GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN------GWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        84 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                       ..++..+|.++...|++++|+.++++++...+.      ...++..+|.++...|++++|..++++++++...
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence             567899999999999999999999999987432      2567889999999999999999999999987654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.65  E-value=3.7e-16  Score=104.16  Aligned_cols=92  Identities=13%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             cCCHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 039523           29 RGEYETSKILREAAMAL---NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI  105 (244)
Q Consensus        29 ~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~  105 (244)
                      .|++++|+..|+++++.   +|+++.++..+|.++...|++++|+.+++++++.+|+++.+++.+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            34555555555555555   344555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhcCCCCHHH
Q 039523          106 AFKEALKLKRNGWQL  120 (244)
Q Consensus       106 ~~~~a~~~~p~~~~~  120 (244)
                      .+++++...|+++.+
T Consensus        83 ~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           83 LLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHCCCHHH
T ss_pred             HHHHHHHhCCCcHHH
Confidence            555555555555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.64  E-value=2.9e-15  Score=120.04  Aligned_cols=129  Identities=10%  Similarity=0.043  Sum_probs=113.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC---ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------cHH
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMAL---NSL---YPDGWFALGAAALKARDVEKALDVFTRAVQLDPE-------NGE   85 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-------~~~   85 (244)
                      ++.+|..+...|++++|+..+++++..   .++   .+.++..+|.++...|++++|+.++.+++.+.+.       ...
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            445999999999999999999999987   232   4578999999999999999999999999987443       345


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      ++..+|.++...|++++|+.++++++.+.+..      ..++.++|.++...|++++|+.++++++++
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999999885533      358999999999999999999999999994

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.64  E-value=1.1e-15  Score=105.55  Aligned_cols=103  Identities=13%  Similarity=0.029  Sum_probs=92.2

Q ss_pred             HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523           61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKS----------KEAFIAFKEALKLKRNGWQLWENYSHVALD  130 (244)
Q Consensus        61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  130 (244)
                      .+.+.+++|++.++++++.+|+++.+|+++|.++...+++          ++|+..|+++++++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999998875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523          131 VG-----------NIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus       131 ~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      +|           ++++|+.+|+++++++|++......+.....
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            85           8999999999999999997765555554443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.63  E-value=2.5e-15  Score=100.06  Aligned_cols=96  Identities=7%  Similarity=0.012  Sum_probs=88.1

Q ss_pred             CchHHHHHHhh---ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKF---QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         1 Ai~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      |+.+|+++++.   +|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++
T Consensus         9 A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   88 (117)
T 3k9i_A            9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII   88 (117)
T ss_dssp             CHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            68899999999   799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHH
Q 039523           78 QLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~   96 (244)
                      ...|+++........+...
T Consensus        89 ~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           89 AETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHCCCHHHHHTHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHH
Confidence            9999998876544444333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.62  E-value=7.1e-15  Score=113.04  Aligned_cols=105  Identities=14%  Similarity=0.168  Sum_probs=101.9

Q ss_pred             CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039523           47 SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH  126 (244)
Q Consensus        47 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  126 (244)
                      |.++..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523          127 VALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus       127 ~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      ++...|++++|+..|+++++++|++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=4e-16  Score=130.89  Aligned_cols=150  Identities=10%  Similarity=-0.001  Sum_probs=137.9

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRG--EYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAV   77 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~   77 (244)
                      +++.++++++.+|++..+|...+.++...+  ++++++.++.++++.+|.+..+|...+.+....| .++++++++.+++
T Consensus        92 eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I  171 (567)
T 1dce_A           92 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI  171 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            467899999999999999999999999999  7799999999999999999999999999999999 9999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-------
Q 039523           78 QLDPENGEAWNIIACLHMIK--------------NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ-------  136 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~-------  136 (244)
                      +.+|.+..+|..++.++...              +.++++++++.+++..+|++..+|+.++.++...+++++       
T Consensus       172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~  251 (567)
T 1dce_A          172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVS  251 (567)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEE
T ss_pred             HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeec
Confidence            99999999999999998885              567999999999999999999999999999999988666       


Q ss_pred             -----HHHHHHHHHhhcCC
Q 039523          137 -----ALEAVQMVLNITNN  150 (244)
Q Consensus       137 -----A~~~~~~al~~~p~  150 (244)
                           |+.+|.+++.++|.
T Consensus       252 ~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          252 REEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             TTTTEEEEEEEEEECTTBT
T ss_pred             cCCceEEEEeccceecccc
Confidence                 45556677766665

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.61  E-value=2e-13  Score=105.52  Aligned_cols=139  Identities=12%  Similarity=0.051  Sum_probs=120.1

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc--
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKALDVFTRAVQLDPEN--   83 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--   83 (244)
                      +|.....+...+..+...|++++|+..+.+++...+...      ..++.+|.++...|++++|+..+++++...+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            455666778889999999999999999999999887654      345678899999999999999999999875543  


Q ss_pred             ----HHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           84 ----GEAWNIIACLHMIKNKSKEAFIAFKEAL---KLKRNGW----QLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        84 ----~~~~~~l~~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                          ..++..+|.++...|++++|+.+|++++   +..|++.    .++.++|.++..+|++++|+.++++++++.++
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence                5689999999999999999999999999   4456543    68999999999999999999999999988643

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.60  E-value=1.5e-14  Score=115.82  Aligned_cols=148  Identities=14%  Similarity=0.034  Sum_probs=119.8

Q ss_pred             CchHHHHHHhhccC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------ChhHHHHHHHHHHHccCHH
Q 039523            1 MMPAMKKLWKFQMI-------SQLELRSLARSAYNRGEYETSKILREAAMALNSL------YPDGWFALGAAALKARDVE   67 (244)
Q Consensus         1 Ai~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~   67 (244)
                      |+.+++++++..+.       .+.++..+|.++...|++++|+..+++++...+.      ...++.++|.++...|+++
T Consensus       160 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~  239 (378)
T 3q15_A          160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ  239 (378)
T ss_dssp             HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            46788899887442       3567889999999999999999999999987431      2457889999999999999


Q ss_pred             HHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CH-------------------
Q 039523           68 KALDVFTRAVQ-----LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-----GW-------------------  118 (244)
Q Consensus        68 ~A~~~~~~a~~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~-------------------  118 (244)
                      +|+.++++++.     .+|..+.++..+|.++...|++++|..++++++...+.     ..                   
T Consensus       240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~  319 (378)
T 3q15_A          240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI  319 (378)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence            99999999999     78888999999999999999999999999999987432     11                   


Q ss_pred             -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523          119 -----------------QLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       119 -----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                                       .++..+|.++...|++++|..+|+++++..
T Consensus       320 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                             234456666666777777777776666543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.59  E-value=1.8e-15  Score=124.68  Aligned_cols=117  Identities=11%  Similarity=0.112  Sum_probs=106.3

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |++.|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|++.++++++.+
T Consensus        25 A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           25 AIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHH--HHHcCChHHHHHHHH-----------HHHhcCCCC
Q 039523           81 PENGEAWNIIACL--HMIKNKSKEAFIAFK-----------EALKLKRNG  117 (244)
Q Consensus        81 p~~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~a~~~~p~~  117 (244)
                      |++..++..++.+  +...|++++|+..++           +++...|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999988  889999999999999           777776653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.58  E-value=4.3e-14  Score=112.79  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=107.1

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHh----------------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQ----------------LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                      ...+..+|..++..|++++|+..|+++++                .+|.+..++.++|.++..+|++++|+.++++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34688999999999999999999999998                77888899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          114 KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       114 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++......+..+.....
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998776666666655444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.57  E-value=3.5e-14  Score=110.54  Aligned_cols=134  Identities=13%  Similarity=0.045  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------cH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKALDVFTRAVQLDPE------NG   84 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~   84 (244)
                      ..+...|.++...|++++|+..|.+++...+..      ..++..+|.++...|++++|+.+|++++.+.+.      ..
T Consensus        37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  116 (307)
T 2ifu_A           37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA  116 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            356677899999999999999999999986533      457889999999999999999999999987532      24


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      .++.++|.++.. |++++|+.+|++++.+.|..      ..++.++|.++..+|++++|+.+|++++++.|+.
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            678899999998 99999999999999987643      5789999999999999999999999999987654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.56  E-value=1e-13  Score=110.52  Aligned_cols=150  Identities=15%  Similarity=0.046  Sum_probs=126.5

Q ss_pred             CchHHHHHHhhccCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHccCHHHH
Q 039523            1 MMPAMKKLWKFQMISQ-----LELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALGAAALKARDVEKA   69 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A   69 (244)
                      |+..+++++...|...     .++..+|.++...|++++|+..+++++...|...      .++..+|.++...|++++|
T Consensus        33 A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  112 (373)
T 1hz4_A           33 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA  112 (373)
T ss_dssp             HHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            4567888888866542     3678899999999999999999999998765432      3467899999999999999


Q ss_pred             HHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHH
Q 039523           70 LDVFTRAVQLD--------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-----GWQLWENYSHVALDVGNIGQ  136 (244)
Q Consensus        70 ~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~la~~~~~~~~~~~  136 (244)
                      ...+++++...        |....++..+|.++...|++++|..++++++...+.     ...++..+|.++...|++++
T Consensus       113 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  192 (373)
T 1hz4_A          113 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN  192 (373)
T ss_dssp             HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999864        334567888999999999999999999999998764     34678899999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 039523          137 ALEAVQMVLNITNN  150 (244)
Q Consensus       137 A~~~~~~al~~~p~  150 (244)
                      |..++++++.+.+.
T Consensus       193 A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          193 ARSQLNRLENLLGN  206 (373)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.55  E-value=9.7e-13  Score=108.81  Aligned_cols=128  Identities=13%  Similarity=-0.026  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCcHHH
Q 039523           15 SQLELRSLARSAYNR-----GEYETSKILREAAMALNSLYPDGWFALGAAALKAR---DVEKALDVFTRAVQLDPENGEA   86 (244)
Q Consensus        15 ~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~   86 (244)
                      ++.+++.+|.++...     +++++|+.+|+++++.  .++.+++.+|.++...|   ++++|+++|+++++.  .++.+
T Consensus       290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a  365 (490)
T 2xm6_A          290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAA  365 (490)
T ss_dssp             CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHH
Confidence            344444444444444     4444444444444443  23344444444444433   444444444444443  34444


Q ss_pred             HHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Q 039523           87 WNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        87 ~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~  148 (244)
                      ++.+|.++..    .+++++|+.+|+++++..  ++.++.++|.++..    .+++++|..+|+++++..
T Consensus       366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            5555555544    445555555555544432  34445555555554    445555555555555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.54  E-value=8.8e-15  Score=115.44  Aligned_cols=118  Identities=15%  Similarity=0.118  Sum_probs=74.8

Q ss_pred             CchHHHHHHhhccCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc
Q 039523            1 MMPAMKKLWKFQMISQ-----------------LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA   63 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   63 (244)
                      |+..|++++...|++.                 .++.++|.++...|++++|+..|++++..+|++..+++.+|.++...
T Consensus       198 A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~  277 (338)
T 2if4_A          198 AMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL  277 (338)
T ss_dssp             HHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            5788999999999877                 48999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCCH
Q 039523           64 RDVEKALDVFTRAVQLDPENGEAWNIIACL-HMIKNKSKEAFIAFKEALKLKRNGW  118 (244)
Q Consensus        64 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~p~~~  118 (244)
                      |++++|+..|+++++++|+++.++..++.+ ....+..+.+...|.+++...|+++
T Consensus       278 g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          278 GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             TCHHHHHHHHHHTTC-----------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            999999999999999999999999999988 4556778899999999999988764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.53  E-value=9.3e-14  Score=91.99  Aligned_cols=80  Identities=13%  Similarity=0.154  Sum_probs=42.8

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      +..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|
T Consensus         5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A            5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.53  E-value=9.5e-13  Score=101.12  Aligned_cols=145  Identities=17%  Similarity=0.115  Sum_probs=121.2

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChhHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNS--LYPDGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |+..|++.++..+.+...+..+|.++...|++++|+..+.+.+..+|  ++..+...++.++...|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            46677887777666777888999999999999999999999999987  7889999999999999999999999999999


Q ss_pred             cCCC----cHHHHHHH--HHHHHHcC--ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           79 LDPE----NGEAWNII--ACLHMIKN--KSKEAFIAFKEALKLKRN--GWQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        79 ~~p~----~~~~~~~l--~~~~~~~~--~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      .+|+    +......+  |.+....|  ++.+|...|+++....|+  ....+++   ++..+|++++|...++.+++..
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence            9983    23333444  54566666  999999999999888886  3334444   8999999999999999888874

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.52  E-value=3.9e-13  Score=103.79  Aligned_cols=133  Identities=14%  Similarity=0.060  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPD------GWFALGAAALKARDVEKALDVFTRAVQLDPEN------GE   85 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~   85 (244)
                      .+...+..+...|++++|...+++++...+..+.      .+..+|.++...|++++|+.++++++...+..      ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            3445578889999999999999999998876655      23358999999999999999999999865432      34


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKL-------KRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ++.++|.++...|++++|+.+|++++..       .+....++.++|.++..+|++++|+.++++++++.+.
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999953       2223568899999999999999999999999998754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.1e-14  Score=95.49  Aligned_cols=93  Identities=9%  Similarity=0.123  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------HHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN------GEAWNI   89 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~   89 (244)
                      +..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777776      666677


Q ss_pred             HHHHHHHcCChHHHHHHHH
Q 039523           90 IACLHMIKNKSKEAFIAFK  108 (244)
Q Consensus        90 l~~~~~~~~~~~~A~~~~~  108 (244)
                      +|.++...|+++.|+..++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHH
Confidence            7777776666665554443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.52  E-value=7.2e-13  Score=103.64  Aligned_cols=151  Identities=10%  Similarity=0.058  Sum_probs=134.3

Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 039523           13 MISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQLDPENGEAWNIIA   91 (244)
Q Consensus        13 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~l~   91 (244)
                      |+...++..+..+....+..++|+..+.+++..+|++..+|...+.++...| .+++++..+++++..+|.+..+|...+
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~  130 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL  130 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            4445566666666677777789999999999999999999999999999999 599999999999999999999999999


Q ss_pred             HHHHHc-C-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523           92 CLHMIK-N-KSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIG--------QALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus        92 ~~~~~~-~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                      .++... + ++++++.++.+++..+|.+..+|...+.+....|.++        ++++++.++++.+|.+..++.....+
T Consensus       131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~l  210 (349)
T 3q7a_A          131 LLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYL  210 (349)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999998 8 8999999999999999999999999999999998887        99999999999999966665555544


Q ss_pred             HH
Q 039523          162 VL  163 (244)
Q Consensus       162 ~~  163 (244)
                      ..
T Consensus       211 L~  212 (349)
T 3q7a_A          211 RV  212 (349)
T ss_dssp             HT
T ss_pred             HH
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.51  E-value=3.1e-13  Score=89.43  Aligned_cols=83  Identities=11%  Similarity=0.043  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           68 KALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        68 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      +|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34555556666666666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             cCC
Q 039523          148 TNN  150 (244)
Q Consensus       148 ~p~  150 (244)
                      .|+
T Consensus        83 ~~~   85 (115)
T 2kat_A           83 AQS   85 (115)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.51  E-value=1.2e-12  Score=107.31  Aligned_cols=138  Identities=16%  Similarity=0.136  Sum_probs=122.2

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCChhHHHHHHHH-H--HHccCHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNR----GEYETSKILREAAMALNSLYPDGWFALGAA-A--LKARDVEKALDVF   73 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~   73 (244)
                      |+.+|+++.+..|..+..++.+|.+|...    +++++|+.+|+++.   |.++.+++.+|.+ +  ...+++++|+.+|
T Consensus       198 A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~  274 (452)
T 3e4b_A          198 LLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYL  274 (452)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            46789999999999999989999999766    79999999999988   8899999999998 4  5789999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 039523           74 TRAVQLDPENGEAWNIIACLHMIKN-----KSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMV  144 (244)
Q Consensus        74 ~~a~~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a  144 (244)
                      +++...  .++.+++++|.++. .|     ++++|+.+|+++.   +.++.+++++|.+|..    ..++++|+.+|+++
T Consensus       275 ~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  348 (452)
T 3e4b_A          275 DNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA  348 (452)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred             HHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            999865  48999999999998 55     9999999999998   8899999999998887    44999999999999


Q ss_pred             Hhh
Q 039523          145 LNI  147 (244)
Q Consensus       145 l~~  147 (244)
                      .+.
T Consensus       349 a~~  351 (452)
T 3e4b_A          349 ARN  351 (452)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.50  E-value=4e-12  Score=105.11  Aligned_cols=138  Identities=11%  Similarity=-0.045  Sum_probs=91.6

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHHH
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYN----RGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDVF   73 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~   73 (244)
                      +.+|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++...  .++.+++.+|.++..    .+++++|+.+|
T Consensus        63 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  138 (490)
T 2xm6_A           63 MDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWF  138 (490)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            4556666554  566677777777776    67777777777777654  356666677777766    66777777777


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 039523           74 TRAVQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVL  145 (244)
Q Consensus        74 ~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al  145 (244)
                      +++...  .++.+++.+|.++..    .+++++|+.+|+++++.  .++.++..+|.++..    .+++++|+.+|+++.
T Consensus       139 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  214 (490)
T 2xm6_A          139 RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA  214 (490)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence            776554  456667777777666    66677777777776664  356666777776666    666777777776666


Q ss_pred             hh
Q 039523          146 NI  147 (244)
Q Consensus       146 ~~  147 (244)
                      +.
T Consensus       215 ~~  216 (490)
T 2xm6_A          215 TS  216 (490)
T ss_dssp             HT
T ss_pred             HC
Confidence            54

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.50  E-value=4.3e-13  Score=84.58  Aligned_cols=83  Identities=25%  Similarity=0.477  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      ++.+++.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             HHc
Q 039523           95 MIK   97 (244)
Q Consensus        95 ~~~   97 (244)
                      ...
T Consensus        88 ~~~   90 (91)
T 1na3_A           88 QKQ   90 (91)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.49  E-value=1e-12  Score=100.99  Aligned_cols=153  Identities=10%  Similarity=-0.050  Sum_probs=127.5

Q ss_pred             CchHHHHHHhhcc--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChhHHHHHH--HHHHHcc--CHHHHH
Q 039523            1 MMPAMKKLWKFQM--ISQLELRSLARSAYNRGEYETSKILREAAMALNSL----YPDGWFALG--AAALKAR--DVEKAL   70 (244)
Q Consensus         1 Ai~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la--~~~~~~g--~~~~A~   70 (244)
                      |++++.+.+..+|  ++.+++..++.++..+|+.+.|.+.++++.+.+|+    +..+...++  .+.+..|  ++.+|.
T Consensus       119 AL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~  198 (310)
T 3mv2_B          119 SLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNF  198 (310)
T ss_dssp             HHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHH
T ss_pred             HHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHH
Confidence            4677888877776  88999999999999999999999999999999983    233444444  4466666  999999


Q ss_pred             HHHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 039523           71 DVFTRAVQLDPE--NGEAWNIIACLHMIKNKSKEAFIAFKEALKL----------KRNGWQLWENYSHVALDVGNIGQAL  138 (244)
Q Consensus        71 ~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~p~~~~~~~~la~~~~~~~~~~~A~  138 (244)
                      ..|+++....|+  .+..+++   ++..+|++++|...++.+++.          +|+++.++.+++.+...+|+  +|.
T Consensus       199 ~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~  273 (310)
T 3mv2_B          199 YYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE  273 (310)
T ss_dssp             HHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH
T ss_pred             HHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH
Confidence            999999998887  3444444   899999999999999988776          48899999999999999998  899


Q ss_pred             HHHHHHHhhcCCchhhHHHH
Q 039523          139 EAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus       139 ~~~~~al~~~p~~~~~~~~l  158 (244)
                      +++.++.+..|+++.....-
T Consensus       274 ~l~~qL~~~~P~hp~i~d~~  293 (310)
T 3mv2_B          274 DLTNQLVKLDHEHAFIKHHQ  293 (310)
T ss_dssp             HHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHH
Confidence            99999999999988655443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.49  E-value=2.6e-14  Score=93.72  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=82.9

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHH
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG------WQLWE  122 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~  122 (244)
                      ++.++..+|.++...|++++|++.|+++++.+|+++.++.++|.++...|++++|+..+++++.++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999999999999999999999998      88888


Q ss_pred             HHHHHHHHcCCHHHHHHHHH
Q 039523          123 NYSHVALDVGNIGQALEAVQ  142 (244)
Q Consensus       123 ~la~~~~~~~~~~~A~~~~~  142 (244)
                      .+|.++...|+++.|+..++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            89999888887776655543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.48  E-value=6.8e-13  Score=83.63  Aligned_cols=85  Identities=27%  Similarity=0.479  Sum_probs=78.3

Q ss_pred             CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 039523           48 LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHV  127 (244)
Q Consensus        48 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~  127 (244)
                      .++.+++.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHcC
Q 039523          128 ALDVG  132 (244)
Q Consensus       128 ~~~~~  132 (244)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            87654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.47  E-value=1.7e-12  Score=106.35  Aligned_cols=140  Identities=11%  Similarity=0.036  Sum_probs=122.5

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCcHHH
Q 039523           14 ISQLELRSLARSAYNRG---EYETSKILREAAMALNSLYPDGWFALGAAALKA----RDVEKALDVFTRAVQLDPENGEA   86 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~   86 (244)
                      .++.+++.+|.++...|   ++++|+.+|+++....|.....++.+|.+|...    +++++|+.+|+++.   |.++.+
T Consensus       174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a  250 (452)
T 3e4b_A          174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS  250 (452)
T ss_dssp             TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence            34459999999999999   999999999999999999999889999999766    79999999999998   899999


Q ss_pred             HHHHHHH-H--HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523           87 WNIIACL-H--MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG-----NIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus        87 ~~~l~~~-~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                      ++++|.+ +  ...+++++|+.+|+++.+.  .++.+++++|.+|. .|     ++++|+.+|+++.   |+++.....+
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~L  324 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYL  324 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHH
Confidence            9999998 4  5789999999999999865  48999999999998 56     9999999999998   6655555555


Q ss_pred             HHHH
Q 039523          159 ERIV  162 (244)
Q Consensus       159 ~~~~  162 (244)
                      ..+.
T Consensus       325 g~~y  328 (452)
T 3e4b_A          325 GQIY  328 (452)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.44  E-value=2.1e-12  Score=93.73  Aligned_cols=125  Identities=17%  Similarity=0.142  Sum_probs=102.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCC
Q 039523           26 AYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ------LDPENGEAWNIIACLHMIKNK   99 (244)
Q Consensus        26 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~------~~p~~~~~~~~l~~~~~~~~~   99 (244)
                      .+..|++++|...++......+....++..+|.++...|++++|+..+++++.      ..|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            35689999999966555443336678999999999999999999999999998      444567789999999999999


Q ss_pred             hHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          100 SKEAFIAFKEALKL---KRN----GWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       100 ~~~A~~~~~~a~~~---~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +++|+.++++++..   .++    ...++.++|.++...|++++|+.++++++++.+.
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  139 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ  139 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            99999999999988   442    3567899999999999999999999999987543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.42  E-value=4.1e-12  Score=101.14  Aligned_cols=135  Identities=11%  Similarity=0.008  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH------
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVEKALDVFTRAVQLDPENG------   84 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------   84 (244)
                      ..++..+|.++...|++++|+..+++++...|....     ++..+|.++...|++++|...+++++...|...      
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            466788899999999999999999999998876532     678899999999999999999999998765332      


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKLK--------RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .++..+|.++...|++++|...+++++...        |....++.++|.++...|++++|..++++++...+.
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            346789999999999999999999999874        334567888999999999999999999999998775

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.42  E-value=2.3e-12  Score=83.07  Aligned_cols=70  Identities=13%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            5777777777777777777777777777777777777777777777777777777777777777776654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.38  E-value=5e-12  Score=81.49  Aligned_cols=71  Identities=13%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.|+
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            56667777777777777777777777777777777777777777777777777777777777777766554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.38  E-value=1.3e-12  Score=83.92  Aligned_cols=88  Identities=14%  Similarity=0.139  Sum_probs=47.5

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 039523           55 ALGAAALKARDVEKALDVFTRAVQLDPENGE-AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN  133 (244)
Q Consensus        55 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~  133 (244)
                      ..|.++...|++++|+..++++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++.+        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            3455555555555555555555555555555 55555555555555555555555555555555544422        34


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 039523          134 IGQALEAVQMVLNITNN  150 (244)
Q Consensus       134 ~~~A~~~~~~al~~~p~  150 (244)
                      +.++...|++++..+|+
T Consensus        77 ~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHhccCcc
Confidence            44555555555555444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.37  E-value=1.4e-12  Score=83.76  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPD-GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIK   97 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   97 (244)
                      .+..|..+...|++++|+..++++++.+|+++. +++.+|.++...|++++|++.|+++++.+|+++.++..        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            357899999999999999999999999999999 99999999999999999999999999999999988754        


Q ss_pred             CChHHHHHHHHHHHhcCCCC
Q 039523           98 NKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        98 ~~~~~A~~~~~~a~~~~p~~  117 (244)
                      +.+.+++..|++++..+|++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHHhccCccc
Confidence            55677888888777776654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.35  E-value=3.1e-12  Score=97.05  Aligned_cols=121  Identities=10%  Similarity=-0.124  Sum_probs=102.4

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLY--PDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      +.|+.++..+|++. ..+.+|.+++..++|++|+..++++....+..  ..+++.+|.++...|++++|+.+|++++...
T Consensus       123 ~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          123 EALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            34444444578888 99999999999999999999999877653221  3589999999999999999999999998654


Q ss_pred             --CC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523           81 --PE-NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYS  125 (244)
Q Consensus        81 --p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la  125 (244)
                        |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..+.
T Consensus       202 ~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          202 AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence              65 6789999999999999999999999999999998 77766653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.35  E-value=7.1e-11  Score=92.39  Aligned_cols=143  Identities=15%  Similarity=0.095  Sum_probs=112.7

Q ss_pred             HHhhccCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCH-------HHHH-HHHH
Q 039523            8 LWKFQMISQLEL--RSLARSAYNRGE---YETSKILREAAMALNSLYPDGWFALGAAALKARDV-------EKAL-DVFT   74 (244)
Q Consensus         8 al~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~-~~~~   74 (244)
                      +....|.++.+|  +..|..++..++   ..+|+.+|+++++.+|+++.++..++.++.....+       ..+. ..+.
T Consensus       186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~  265 (372)
T 3ly7_A          186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID  265 (372)
T ss_dssp             HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence            344456665544  566777776544   58899999999999999999999888887632111       1111 1222


Q ss_pred             --HHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           75 --RAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        75 --~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                        .++..+|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|++.|.+|++++|..
T Consensus       266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence              233567999999999999999999999999999999999974 7788899999999999999999999999999984

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.35  E-value=3.9e-12  Score=88.49  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=97.9

Q ss_pred             CchHHHHHHhhccCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHH
Q 039523            1 MMPAMKKLWKFQMIS------QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEK   68 (244)
Q Consensus         1 Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~   68 (244)
                      |+..|+++++..+..      ..++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++
T Consensus        28 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  107 (164)
T 3ro3_A           28 AVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK  107 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence            467888888875432      2588999999999999999999999999876543      5678899999999999999


Q ss_pred             HHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523           69 ALDVFTRAVQLDP------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN  116 (244)
Q Consensus        69 A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  116 (244)
                      |..++++++...+      ....++..+|.++...|++++|..++++++++...
T Consensus       108 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          108 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            9999999997643      22467889999999999999999999999887543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.34  E-value=6.5e-11  Score=100.97  Aligned_cols=150  Identities=7%  Similarity=-0.042  Sum_probs=92.4

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSK-ILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL--   79 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--   79 (244)
                      ..|++++...|.++..|+..+......|+.++|+ ..|.+++...|.+...|..++......|++++|...|++++..  
T Consensus       330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~  409 (679)
T 4e6h_A          330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH  409 (679)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3566777777777777777777777777766675 7777777777766666777777777777777777777776653  


Q ss_pred             ---------CCC-----------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-HHHH
Q 039523           80 ---------DPE-----------NGEAWNIIACLHMIKNKSKEAFIAFKEALKL-KRNGWQLWENYSHVALDVGN-IGQA  137 (244)
Q Consensus        80 ---------~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~~~~-~~~A  137 (244)
                               .|.           ...+|...+.+..+.|..+.|...|.+|++. .+....+|...+.+....++ .+.|
T Consensus       410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A  489 (679)
T 4e6h_A          410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA  489 (679)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred             HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence                     132           2335666666666666666666666666655 33334445555554444432 5566


Q ss_pred             HHHHHHHHhhcCCch
Q 039523          138 LEAVQMVLNITNNKR  152 (244)
Q Consensus       138 ~~~~~~al~~~p~~~  152 (244)
                      ...|+++++..|+.+
T Consensus       490 r~ife~~Lk~~p~~~  504 (679)
T 4e6h_A          490 CKVLELGLKYFATDG  504 (679)
T ss_dssp             HHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHCCCch
Confidence            666666665555543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.34  E-value=7.5e-11  Score=105.45  Aligned_cols=155  Identities=12%  Similarity=0.081  Sum_probs=102.8

Q ss_pred             hHHHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            3 PAMKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         3 ~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      ..+++|++.  ..+.+.+|..+|.++...|++++|+..|.++     +++..+..+|.++.+.|++++|+++|..+.+..
T Consensus      1090 ~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1090 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            456666665  3677888889999999999999999888775     677888888888888888888888887766554


Q ss_pred             CCc---------------------------H--------------------------HHHHHHHHHHHHcCChHHHHHHH
Q 039523           81 PEN---------------------------G--------------------------EAWNIIACLHMIKNKSKEAFIAF  107 (244)
Q Consensus        81 p~~---------------------------~--------------------------~~~~~l~~~~~~~~~~~~A~~~~  107 (244)
                      ++.                           .                          ..|..+|.++.++|++++|++.+
T Consensus      1165 ~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A         1165 RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred             ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHH
Confidence            321                           1                          23444555555555555555555


Q ss_pred             HHHHhcCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          108 KEALKLKR-------------------------NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       108 ~~a~~~~p-------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      +++....+                         .++..+..++..|...|.+++|+.+++.++.++|.+......+..+.
T Consensus      1245 rKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A         1245 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred             HHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence            55522221                         12233445566677778888888888888877766444443343333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.32  E-value=1.6e-11  Score=101.04  Aligned_cols=129  Identities=11%  Similarity=-0.058  Sum_probs=107.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCc---
Q 039523           20 RSLARSAYNRGEYETSKILREAAMAL-----NSLYP---DGWFALGAAALKARDVEKALDVFTRAVQL-----DPEN---   83 (244)
Q Consensus        20 ~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~---   83 (244)
                      ...+..+..+|+|++|+..+++++..     .|+++   ..+.++|.+|..+|+|++|+.++++++.+     .|++   
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            34455677899999999999999985     34554   57889999999999999999999999875     3444   


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           84 GEAWNIIACLHMIKNKSKEAFIAFKEALKL-----KRNG---WQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      ...+.++|.+|..+|++++|..++++++.+     .|++   .....+++.++..++.+++|...|.++.+..
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999976     4555   4556788999999999999999999986543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.31  E-value=3.1e-11  Score=97.89  Aligned_cols=150  Identities=10%  Similarity=0.042  Sum_probs=125.4

Q ss_pred             CchHHHHHHhhccCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQ-----------------LELRSLARSAYNRGEYETSKILREAAMALNSLYP------DGWFALG   57 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la   57 (244)
                      |++.|.++++..|...                 .++..+|.+|...|++++|+.++.+++...+...      .+...++
T Consensus        23 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~  102 (434)
T 4b4t_Q           23 AEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIE  102 (434)
T ss_dssp             HHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            5678888888766542                 4688999999999999999999999998765543      2456778


Q ss_pred             HHHHHccCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHH
Q 039523           58 AAALKARDVEKALDVFTRAVQLDP------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKL------KRNGWQLWENYS  125 (244)
Q Consensus        58 ~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~la  125 (244)
                      .++...|++++|+.++.+++...+      ....++..+|.++...|++++|...+++++..      .+....++..++
T Consensus       103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
T 4b4t_Q          103 KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES  182 (434)
T ss_dssp             HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            888889999999999999887532      34678899999999999999999999998765      233467899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          126 HVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       126 ~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      .+|...|++++|..++++++...+.
T Consensus       183 ~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          183 KVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999987654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.31  E-value=1.2e-10  Score=99.26  Aligned_cols=148  Identities=10%  Similarity=0.004  Sum_probs=132.1

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----------CC-----------ChhHHHHHHHHH
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN-----------SL-----------YPDGWFALGAAA   60 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~la~~~   60 (244)
                      ..|++|+...|.+...|..++......|++++|...|++++...           |.           ...+|..++.+.
T Consensus       365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e  444 (679)
T 4e6h_A          365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM  444 (679)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999752           43           345799999999


Q ss_pred             HHccCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 039523           61 LKARDVEKALDVFTRAVQL-DPENGEAWNIIACLHMIKNK-SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL  138 (244)
Q Consensus        61 ~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~  138 (244)
                      .+.|+.+.|...|.++++. .+....+|...+.+....++ ++.|...|+.+++..|+++..|...+......|+.+.|.
T Consensus       445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR  524 (679)
T 4e6h_A          445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK  524 (679)
T ss_dssp             HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999999999988 55567788888887777654 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 039523          139 EAVQMVLNITNN  150 (244)
Q Consensus       139 ~~~~~al~~~p~  150 (244)
                      ..|++++...|+
T Consensus       525 ~lferal~~~~~  536 (679)
T 4e6h_A          525 SLFESSIDKISD  536 (679)
T ss_dssp             HHHHHHTTTSSS
T ss_pred             HHHHHHHHhcCC
Confidence            999999998874

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.29  E-value=1.4e-10  Score=79.30  Aligned_cols=111  Identities=16%  Similarity=0.122  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHH
Q 039523           30 GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI----KNKSKEAFI  105 (244)
Q Consensus        30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~  105 (244)
                      +++++|+.+|+++.+...  +.+.  +|.++...+.+++|+++|+++.+.  .++.+++++|.++..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            468899999999998864  3344  899999989999999999999886  688999999999998    899999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Q 039523          106 AFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       106 ~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~  148 (244)
                      +|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+..
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            99999886  578899999999999    899999999999998874

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.29  E-value=1.5e-10  Score=79.17  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=99.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a   76 (244)
                      |+.+|+++.+...  +.+.  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+++|+++
T Consensus        14 A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A   87 (138)
T 1klx_A           14 AIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA   87 (138)
T ss_dssp             HHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence            5678899988764  3344  999999999999999999999987  689999999999999    89999999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039523           77 VQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYS  125 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la  125 (244)
                      .+.  .++.+.+++|.++..    .+++++|+.+|+++.+..  ++.+..+++
T Consensus        88 a~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           88 CGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            986  689999999999999    899999999999999874  455555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.24  E-value=9.2e-11  Score=91.78  Aligned_cols=117  Identities=9%  Similarity=0.007  Sum_probs=96.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCH-------HHHHH-HHH--HHHhhCCCChhHHHHHHHHHHHccCHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEY-------ETSKI-LRE--AAMALNSLYPDGWFALGAAALKARDVEKAL   70 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~-------~~A~~-~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~   70 (244)
                      |+.+|++|++++|+.+.++..++.++.....+       ..++. .++  .++..+|.++.++..++..+...|++++|+
T Consensus       218 A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~  297 (372)
T 3ly7_A          218 ASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESY  297 (372)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHH
Confidence            57899999999999999999988888632111       11111 122  123557889999999999999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523           71 DVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW  118 (244)
Q Consensus        71 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  118 (244)
                      ..+++++.++| +..+|..+|.++...|++++|++.|.+|+.++|...
T Consensus       298 ~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          298 QAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            99999999997 477888999999999999999999999999999765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.23  E-value=7e-10  Score=83.56  Aligned_cols=150  Identities=15%  Similarity=0.143  Sum_probs=114.0

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHh-------c--------------CCHHHHHHHHHHHH-------hh--------
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYN-------R--------------GEYETSKILREAAM-------AL--------   45 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~-------~--------------~~~~~A~~~~~~al-------~~--------   45 (244)
                      +.+++-.+..+|++...+...|..|..       .              .++..|...|.++.       +.        
T Consensus        52 Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~  131 (301)
T 3u64_A           52 LKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTRE  131 (301)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            456777888899997766555544432       1              12445555555543       22        


Q ss_pred             ----------------CCCChhHHHHHHHHHHH-----cc------CHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHH
Q 039523           46 ----------------NSLYPDGWFALGAAALK-----AR------DVEKALDVFTRAVQLDPE--NGEAWNIIACLHMI   96 (244)
Q Consensus        46 ----------------~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~   96 (244)
                                      +|+++.+++..|.+...     .|      ....|...++++++++|+  +..+|..+|.+|..
T Consensus       132 ~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~  211 (301)
T 3u64_A          132 VFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA  211 (301)
T ss_dssp             HTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred             HHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh
Confidence                            23445566666655433     12      367899999999999999  67799999999999


Q ss_pred             c-----CChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCc
Q 039523           97 K-----NKSKEAFIAFKEALKLKRNG-WQLWENYSHVALD-VGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        97 ~-----~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~  151 (244)
                      .     |+.++|..+|+++++++|+. ..+++.+|..+.. .|+++.+..++++++...|..
T Consensus       212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            5     99999999999999999975 9999999999988 599999999999999987773

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.19  E-value=5.9e-10  Score=70.47  Aligned_cols=71  Identities=11%  Similarity=0.077  Sum_probs=56.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           80 DPENGEAWNIIACLHMIKNK---SKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +|+++..+..+|.+++..++   .++|...++++++.+|+++.++..+|..+...|+|++|+.+|+++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57778888888888765555   678888888888888888888888888888888888888888888888877

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.15  E-value=5.2e-10  Score=89.77  Aligned_cols=134  Identities=11%  Similarity=0.170  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      ..+|..+|..++..|.|++|+.+|.++        ..|..+|.++.+.|++++|++.+.++     .++.+|...+.++.
T Consensus       122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          122 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             ---------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            457888888888888888888888866        46778888888888888888888888     46788888888888


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ..|+++.|..+... +...|   .-...+..+|.+.|++++|+.++++++.+++.+-.....+..+...+.
T Consensus       189 ~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          189 DGKEFRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HTTCHHHHHHTTTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HcCcHHHHHHHHHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence            88888888776654 33444   334567888999999999999999999999876555555555544443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.14  E-value=7.5e-10  Score=70.01  Aligned_cols=72  Identities=14%  Similarity=0.202  Sum_probs=48.8

Q ss_pred             ccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc
Q 039523           12 QMISQLELRSLARSAYNRGE---YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN   83 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   83 (244)
                      +|+++..+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.++++++..+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            46666777777776655444   5667777777777777777777777777777777777777777777666653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.11  E-value=1.4e-09  Score=74.29  Aligned_cols=103  Identities=13%  Similarity=0.038  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 039523           65 DVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN---KSKEAFIAFKEALKLK-R-NGWQLWENYSHVALDVGNIGQALE  139 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~~~~~~A~~  139 (244)
                      ....+.+.|.+.++.+|.+..+.+++|.++.+.+   +.++++..++..++.+ | +..++++++|..+.+.|+|++|+.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3466777788888888889999999999999988   6679999999999988 7 568899999999999999999999


Q ss_pred             HHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 039523          140 AVQMVLNITNNKRIDTELLERIVLNLEG  167 (244)
Q Consensus       140 ~~~~al~~~p~~~~~~~~l~~~~~~~~~  167 (244)
                      +++++++++|++.........+...+.+
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999987777666666665553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.08  E-value=2.3e-09  Score=73.18  Aligned_cols=96  Identities=11%  Similarity=0.043  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc---CHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCChHHHHHH
Q 039523           32 YETSKILREAAMALNSLYPDGWFALGAAALKAR---DVEKALDVFTRAVQLD-P-ENGEAWNIIACLHMIKNKSKEAFIA  106 (244)
Q Consensus        32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~  106 (244)
                      ...+...|.+.+..++.+..+.+.+|.++.+.+   +.++++..++.+++.+ | +..++++++|..+++.|+|++|..+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            456777888888888889999999999999988   6779999999999988 7 5688999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHH
Q 039523          107 FKEALKLKRNGWQLWENYSHV  127 (244)
Q Consensus       107 ~~~a~~~~p~~~~~~~~la~~  127 (244)
                      ++++++.+|++..+......+
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHH
Confidence            999999999988776554443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.04  E-value=4.3e-10  Score=92.51  Aligned_cols=114  Identities=8%  Similarity=0.005  Sum_probs=95.0

Q ss_pred             CchHHHHHHhh--------ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCh---hHHHHHHHHHHHcc
Q 039523            1 MMPAMKKLWKF--------QMISQLELRSLARSAYNRGEYETSKILREAAMAL-----NSLYP---DGWFALGAAALKAR   64 (244)
Q Consensus         1 Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g   64 (244)
                      |+.+|++++++        +|+....+.++|.+|..+|+|++|+.++++++..     .|+++   ..+.++|.+|...|
T Consensus       328 A~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G  407 (490)
T 3n71_A          328 VVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG  407 (490)
T ss_dssp             HHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC
Confidence            45678888876        4455678899999999999999999999999975     35554   56889999999999


Q ss_pred             CHHHHHHHHHHHHhc-----CCCcHH---HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523           65 DVEKALDVFTRAVQL-----DPENGE---AWNIIACLHMIKNKSKEAFIAFKEALKLK  114 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~-----~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  114 (244)
                      ++++|+.+|++++.+     .|+++.   ...+++.++..++.+++|...|.++.+..
T Consensus       408 ~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          408 HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999975     566654   56788999999999999999998876543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.03  E-value=3.1e-08  Score=81.91  Aligned_cols=140  Identities=14%  Similarity=0.050  Sum_probs=115.8

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHH------------------------
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGA------------------------   58 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------------------   58 (244)
                      .+|++++...|..+..|...+..+...|+.++|...|++++.. |.+...|...+.                        
T Consensus       200 ~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~  278 (493)
T 2uy1_A          200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAE  278 (493)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--------
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhh
Confidence            5799999999999999999999999999999999999999999 987655544433                        


Q ss_pred             ----------------HHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHH
Q 039523           59 ----------------AALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN-KSKEAFIAFKEALKLKRNGWQLW  121 (244)
Q Consensus        59 ----------------~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~  121 (244)
                                      ...+.++.+.|...|.++ ...+....+|...+.+....+ +.+.|...|+.+++..|+.+..|
T Consensus       279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~  357 (493)
T 2uy1_A          279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK  357 (493)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence                            233467788899999999 444446677777777766666 59999999999999999988888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Q 039523          122 ENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus       122 ~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                      ...+......|+.+.|...|+++
T Consensus       358 ~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          358 EEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888888899999988887776

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.03  E-value=1.9e-08  Score=90.43  Aligned_cols=112  Identities=16%  Similarity=0.180  Sum_probs=91.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 039523           22 LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK  101 (244)
Q Consensus        22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  101 (244)
                      +|.++...|.+++|...|+++-    .+.   ..+...+...|++++|.++++++     +.+.+|+.+|.++...|+++
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~----~~~---~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD----VNT---SAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC----CHH---HHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence            3888888999999999999862    111   12333444788888888888865     56889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       102 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      +|+..|.++     +++..+..+|.++...|++++|+++|..+++..++
T Consensus      1123 EAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1123 EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            999999775     77888999999999999999999999999888755

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.00  E-value=8.4e-09  Score=66.68  Aligned_cols=77  Identities=22%  Similarity=0.229  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALN-------SLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAW   87 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~   87 (244)
                      ++.-.+.+|..++..|+|..|+.+|+++++..       +..+.++..+|.++.+.|++++|+..++++++.+|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45556777777777777777777777777653       22345566666666666666666666666666666666665


Q ss_pred             HHHH
Q 039523           88 NIIA   91 (244)
Q Consensus        88 ~~l~   91 (244)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            5554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.99  E-value=8.7e-09  Score=83.39  Aligned_cols=134  Identities=9%  Similarity=0.086  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----------------hHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYP-----------------DGWFALGAAALKARDVEKALDVFTRAVQ   78 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~a~~   78 (244)
                      |......|..+...|++++|++.|.++++..|...                 .++..+|.+|...|++++|.+++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34566778999999999999999999999987653                 2578999999999999999999999988


Q ss_pred             cCCCcH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           79 LDPENG------EAWNIIACLHMIKNKSKEAFIAFKEALKLKR------NGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        79 ~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      ..+...      .+...++.++...|++++|+.++++++...+      ....++..+|.++...|++++|..++.+++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            755432      3456678888899999999999999987633      2367889999999999999999999999987


Q ss_pred             hcC
Q 039523          147 ITN  149 (244)
Q Consensus       147 ~~p  149 (244)
                      ...
T Consensus       164 ~~~  166 (434)
T 4b4t_Q          164 EFK  166 (434)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.96  E-value=7.3e-09  Score=78.07  Aligned_cols=112  Identities=16%  Similarity=0.048  Sum_probs=95.7

Q ss_pred             HHHHHhh-ccCCHHHHHHHHHHHHh-----cC------CHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHc-----cC
Q 039523            5 MKKLWKF-QMISQLELRSLARSAYN-----RG------EYETSKILREAAMALNSL--YPDGWFALGAAALKA-----RD   65 (244)
Q Consensus         5 ~~~al~~-~p~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~   65 (244)
                      +.+++.. +|++++.++..|.....     .|      ....|...++++++++|+  +..++..+|.+|...     |+
T Consensus       140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd  219 (301)
T 3u64_A          140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG  219 (301)
T ss_dssp             HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred             HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            3444443 78888888877776643     13      367889999999999998  677999999999995     99


Q ss_pred             HHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCC
Q 039523           66 VEKALDVFTRAVQLDPEN-GEAWNIIACLHMI-KNKSKEAFIAFKEALKLKRN  116 (244)
Q Consensus        66 ~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~  116 (244)
                      .++|.++|+++++++|+. ...++.+|..+.. .|+++.+..++++++..+|.
T Consensus       220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999999999999999975 9999999999988 49999999999999999876

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.96  E-value=7.3e-09  Score=83.22  Aligned_cols=141  Identities=14%  Similarity=0.104  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      ..|..+|.++.+.|++++|++.++++     .++.+|...+.++...|+++.|..+... +...|+.   ...++.+|.+
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek  219 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQD  219 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHH
Confidence            46889999999999999999999999     4789999999999999999999887765 3344443   4468888999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhcC-----CchhhHHHHHHHHHHhc
Q 039523           97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV--GNIGQALEAVQMVLNITN-----NKRIDTELLERIVLNLE  166 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~  166 (244)
                      .|++++|+.++++++.+++.....+..+|.++.+-  ++..+.++.|...+.+.|     .....|..+..+.-.++
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~  296 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE  296 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999888764  466667777766666655     44444444444443333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.96  E-value=1.4e-08  Score=65.61  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=56.5

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTRAVQLD-------PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW  121 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  121 (244)
                      ++.-++.+|..++..|+|..|+..|+++++..       +..+.++..+|.++.++|+++.|+.++++++++.|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34556778888888888888888888877752       24566777777777777777777777777777777777776


Q ss_pred             HHHH
Q 039523          122 ENYS  125 (244)
Q Consensus       122 ~~la  125 (244)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            6665

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.90  E-value=8.9e-09  Score=83.42  Aligned_cols=87  Identities=10%  Similarity=0.103  Sum_probs=71.8

Q ss_pred             HccCHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q 039523           62 KARDVEKALDVFTRAVQL-----DPENG---EAWNIIACLHMIKNKSKEAFIAFKEALKL--------KRNGWQLWENYS  125 (244)
Q Consensus        62 ~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la  125 (244)
                      ..|+|++|+..+++++++     .|+++   ..+.++|.+|..+|+|++|+.++++++.+        +|+....+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457899999999998874     45554   46788999999999999999999999876        334456688999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhc
Q 039523          126 HVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       126 ~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      .+|..+|++++|+.+|++|+++.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHH
Confidence            99999999999999999998864

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.86  E-value=2.9e-08  Score=80.41  Aligned_cols=96  Identities=14%  Similarity=0.031  Sum_probs=80.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhh-----CCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCc---HHHHHH
Q 039523           26 AYNRGEYETSKILREAAMAL-----NSLYP---DGWFALGAAALKARDVEKALDVFTRAVQL-----DPEN---GEAWNI   89 (244)
Q Consensus        26 ~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~---~~~~~~   89 (244)
                      ....|+|++|+..+++++..     .|+++   ..+.++|.+|..+|+|++|+.++++++.+     .|++   ...+.+
T Consensus       308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            34568999999999999985     45555   46789999999999999999999999975     3444   457899


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHH
Q 039523           90 IACLHMIKNKSKEAFIAFKEALKL-----KRNGWQLW  121 (244)
Q Consensus        90 l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~  121 (244)
                      +|.+|..+|++++|+..+++++.+     .|+++.+.
T Consensus       388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            999999999999999999999886     46665543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.85  E-value=1.5e-08  Score=82.13  Aligned_cols=103  Identities=11%  Similarity=0.048  Sum_probs=62.7

Q ss_pred             HHHccCHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCC---CHHHHHH
Q 039523           60 ALKARDVEKALDVFTRAVQL-----DPENG---EAWNIIACLHMIKNKSKEAFIAFKEALKL-----KRN---GWQLWEN  123 (244)
Q Consensus        60 ~~~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~---~~~~~~~  123 (244)
                      +...|++++|+..+++++.+     .|+++   ..+.++|.+|..+|+|++|+.++++++.+     .|+   ....+.+
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            34556667777777666654     23333   45666667777777777777777766654     223   3445667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-----cCCchhhHHHHHHHH
Q 039523          124 YSHVALDVGNIGQALEAVQMVLNI-----TNNKRIDTELLERIV  162 (244)
Q Consensus       124 la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~  162 (244)
                      +|.+|..+|++++|+.++++++++     .|+++.....+..+.
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  420 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE  420 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            777777777777777777777654     355555555444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.85  E-value=4.2e-08  Score=79.53  Aligned_cols=101  Identities=12%  Similarity=0.003  Sum_probs=83.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCh---hHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCcH---
Q 039523           21 SLARSAYNRGEYETSKILREAAMAL-----NSLYP---DGWFALGAAALKARDVEKALDVFTRAVQL-----DPENG---   84 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~---   84 (244)
                      .....+..+|++++|+..+++++..     .|+++   ..+.++|.+|..+|+|++|+.++++++.+     .|+++   
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            3345566789999999999999975     34554   56889999999999999999999999975     34444   


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHH
Q 039523           85 EAWNIIACLHMIKNKSKEAFIAFKEALKL-----KRNGWQLW  121 (244)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~  121 (244)
                      ..++++|.++..+|++++|+.++++++++     .|+++.+.
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  413 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE  413 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            56899999999999999999999999876     56665543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.66  E-value=5.4e-07  Score=59.31  Aligned_cols=94  Identities=12%  Similarity=0.009  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039523           67 EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKE---AFIAFKEALKLK-R-NGWQLWENYSHVALDVGNIGQALEAV  141 (244)
Q Consensus        67 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~  141 (244)
                      ..+.+.|.+....++.+..+.+++|+++.+..+..+   ++..++..+... | ....+++.+|..+.+.|+|..|+.++
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            344444444444444555555555555555444433   555555555444 3 33455555555555666666666666


Q ss_pred             HHHHhhcCCchhhHHHHHH
Q 039523          142 QMVLNITNNKRIDTELLER  160 (244)
Q Consensus       142 ~~al~~~p~~~~~~~~l~~  160 (244)
                      +..++..|++.-+......
T Consensus        98 ~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           98 RGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHH
Confidence            6666555554444333333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.64  E-value=2.1e-06  Score=57.82  Aligned_cols=120  Identities=18%  Similarity=0.173  Sum_probs=85.1

Q ss_pred             hCCCChhHHHHHHHHHHHccCH------HHHHHHHHHHHhcCCCc--------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523           45 LNSLYPDGWFALGAAALKARDV------EKALDVFTRAVQLDPEN--------GEAWNIIACLHMIKNKSKEAFIAFKEA  110 (244)
Q Consensus        45 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~a~~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a  110 (244)
                      +.|.+++.|..+.......|+.      ++-.+.|++++..-|..        ...|...+.. ...++.+.|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            3455555555555555555555      55555666665544421        2345566644 4558899999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccc
Q 039523          111 LKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGR  168 (244)
Q Consensus       111 ~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  168 (244)
                      +......+.+|...|.....+|+...|...+.+++.+.|.   ....++...+++...
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k---~~~~le~a~~nl~~~  141 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV---PLEMLEIALRNLNLQ  141 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB---CHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC---cHHHHHHHHHhhhcC
Confidence            8887778899999999999999999999999999998887   566777777776643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.64  E-value=9e-07  Score=58.25  Aligned_cols=98  Identities=10%  Similarity=0.009  Sum_probs=82.4

Q ss_pred             CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCChHHHH
Q 039523           30 GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEK---ALDVFTRAVQLD-P-ENGEAWNIIACLHMIKNKSKEAF  104 (244)
Q Consensus        30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~-p-~~~~~~~~l~~~~~~~~~~~~A~  104 (244)
                      .....+...|.+.+..++.+..+.+.+|.++.+.++...   ++..++..++.+ | ...++++.+|..+++.|+|++|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            345566777888888788889999999999999887766   999999998877 5 56788999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHH
Q 039523          105 IAFKEALKLKRNGWQLWENYSHV  127 (244)
Q Consensus       105 ~~~~~a~~~~p~~~~~~~~la~~  127 (244)
                      .+++..++..|++..+......+
T Consensus        95 ~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999998776555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.57  E-value=2.1e-06  Score=57.80  Aligned_cols=111  Identities=9%  Similarity=-0.082  Sum_probs=95.3

Q ss_pred             hhccCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhhCCCC--------hhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523           10 KFQMISQLELRSLARSAYNRGEY------ETSKILREAAMALNSLY--------PDGWFALGAAALKARDVEKALDVFTR   75 (244)
Q Consensus        10 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~   75 (244)
                      -+.|++++.|..........|+.      ++-++.|++++..-|..        ...|..+|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            35799999999999999999999      99999999999987743        3466677755 566999999999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 039523           76 AVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLW  121 (244)
Q Consensus        76 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  121 (244)
                      +++.....+.+|...|....++|+...|.+.+.+++.+.|.....+
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            9988888899999999999999999999999999999999876543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.55  E-value=1.6e-05  Score=65.72  Aligned_cols=119  Identities=9%  Similarity=-0.008  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH------------------
Q 039523           32 YETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL------------------   93 (244)
Q Consensus        32 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~------------------   93 (244)
                      .......|++++...|..+.+|..++..+...|+.++|...|++++.. |.+...|+..+..                  
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~  273 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence            355678999999999999999999999999999999999999999999 9886655544332                  


Q ss_pred             ----------------------HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCC
Q 039523           94 ----------------------HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG-NIGQALEAVQMVLNITNN  150 (244)
Q Consensus        94 ----------------------~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~  150 (244)
                                            ..+.+..+.|...|+++ ...+....+|...|.+....+ +.+.|...|+.+++..|+
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence                                  22456678888999988 443345667777777766666 699999999999998887


Q ss_pred             ch
Q 039523          151 KR  152 (244)
Q Consensus       151 ~~  152 (244)
                      .+
T Consensus       353 ~~  354 (493)
T 2uy1_A          353 ST  354 (493)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.47  E-value=5e-05  Score=62.83  Aligned_cols=150  Identities=9%  Similarity=0.014  Sum_probs=118.0

Q ss_pred             CchHHHHHHhhc-cCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHccCHHHH
Q 039523            1 MMPAMKKLWKFQ-MISQLELRSLARSAYNRG---------EYETSKILREAAMALN-SLYPDGWFALGAAALKARDVEKA   69 (244)
Q Consensus         1 Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A   69 (244)
                      |+++|+++.+.. +-+...|..+-..+...+         ..++|...|.+..... +-+...+..+...+.+.|++++|
T Consensus        45 A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A  124 (501)
T 4g26_A           45 ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMA  124 (501)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            456777776652 225666766666665443         3788999999887754 22778899999999999999999


Q ss_pred             HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           70 LDVFTRAVQLD-PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        70 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      .+++++..+.. .-+...|..+-..+.+.|+.++|.+.|++..+.. ..+...+..+..++.+.|+.++|...+++..+.
T Consensus       125 ~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          125 FDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            99999988753 2367788889999999999999999999987753 225778999999999999999999999988664


Q ss_pred             --cCC
Q 039523          148 --TNN  150 (244)
Q Consensus       148 --~p~  150 (244)
                        .|+
T Consensus       205 g~~ps  209 (501)
T 4g26_A          205 VRQVS  209 (501)
T ss_dssp             TSSBC
T ss_pred             CCCcC
Confidence              454

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.18  E-value=3.9e-05  Score=52.78  Aligned_cols=114  Identities=9%  Similarity=0.066  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---------hHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCcHH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYP---------DGWFALGAAALKARDVEKALDVFTRAVQLD---PENGE   85 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~   85 (244)
                      +++.-...++..|.|+.|+-....++....+++         .++..+|.+++..|+|..|...|+++++..   +..+.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            456667788899999999999888776643333         377889999999999999999999987642   22221


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQM  143 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  143 (244)
                      ....++.    ...+..       ... .+.+.++.+.++.|+..+|++++|+..++.
T Consensus       102 ~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            1100100    000000       011 123455666667777777777776666554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.04  E-value=0.00012  Score=48.32  Aligned_cols=82  Identities=9%  Similarity=-0.034  Sum_probs=47.2

Q ss_pred             cHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523           83 NGEAWNIIACLHMIKNKS---KEAFIAFKEALKLKR-NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                      ++.+.+++|+++.+..+.   ..++..++..++..| ...++++.+|..+.+.|+|+.|+.+.+..+++.|++.-+...-
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            445556666666555443   345666666666555 2355666666666666666666666666666666655444444


Q ss_pred             HHHHHH
Q 039523          159 ERIVLN  164 (244)
Q Consensus       159 ~~~~~~  164 (244)
                      ..+...
T Consensus       119 ~~Ie~k  124 (134)
T 3o48_A          119 SMVEDK  124 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            443333

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.04  E-value=0.0011  Score=54.83  Aligned_cols=133  Identities=14%  Similarity=0.099  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHcc---------CHHHHHHHHHHHHhcC-CCcHHH
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALN-SLYPDGWFALGAAALKAR---------DVEKALDVFTRAVQLD-PENGEA   86 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a~~~~-p~~~~~   86 (244)
                      .+..+-..+.+.|+.++|+..|++..+.. +-+...|..+..++...+         ..++|.+.|++..... +-+...
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            34555677889999999999999998764 226667777777766544         4789999999887653 236778


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCC
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYSHVALDVGNIGQALEAVQMVLNI--TNN  150 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~  150 (244)
                      |..+...+.+.|++++|...+++..+.. ..+...|..+...|...|+.++|...|++..+.  .|+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd  174 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE  174 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence            8899999999999999999999887652 236788899999999999999999999998764  455

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.03  E-value=0.0002  Score=47.90  Aligned_cols=86  Identities=8%  Similarity=-0.014  Sum_probs=66.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHH
Q 039523           81 PENGEAWNIIACLHMIKNKS---KEAFIAFKEALKLKR-NGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTE  156 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  156 (244)
                      .-++.+.+++|+++.+..+.   ..++..++..+...| ...++++.+|..+.++|+|.+|+.+.+..++..|++.-+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45677888888888877664   467888888888777 45778888899999999999999999999999998776666


Q ss_pred             HHHHHHHHhc
Q 039523          157 LLERIVLNLE  166 (244)
Q Consensus       157 ~l~~~~~~~~  166 (244)
                      .-..+...+.
T Consensus       116 Lk~~Ie~~i~  125 (144)
T 1y8m_A          116 LKSMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6665555554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.02  E-value=0.00044  Score=46.24  Aligned_cols=81  Identities=15%  Similarity=0.044  Sum_probs=65.4

Q ss_pred             CCChhHHHHHHHHHHHccCH---HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 039523           47 SLYPDGWFALGAAALKARDV---EKALDVFTRAVQLDP-ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWE  122 (244)
Q Consensus        47 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  122 (244)
                      ..++.+.+++|.++.+..+.   .+++..++..++.+| ...+.++.+|..+++.|+|++|..+.+..++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            34778888899998888764   478888888888888 46678888999999999999999999999999999877655


Q ss_pred             HHHHH
Q 039523          123 NYSHV  127 (244)
Q Consensus       123 ~la~~  127 (244)
                      ....+
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.01  E-value=0.00015  Score=47.92  Aligned_cols=79  Identities=15%  Similarity=0.044  Sum_probs=61.6

Q ss_pred             ChhHHHHHHHHHHHccCH---HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523           49 YPDGWFALGAAALKARDV---EKALDVFTRAVQLDP-ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY  124 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  124 (244)
                      ++.+.+.+|.++.+..+.   .+++..++..++.+| ...+.++.+|..+.+.|+|+.|..+.+.+++..|++..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            667788888888887654   468888888888777 4567888888888888888888888888888888887765554


Q ss_pred             HHH
Q 039523          125 SHV  127 (244)
Q Consensus       125 a~~  127 (244)
                      ..+
T Consensus       119 ~~I  121 (134)
T 3o48_A          119 SMV  121 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.93  E-value=9.8e-05  Score=50.81  Aligned_cols=64  Identities=11%  Similarity=-0.074  Sum_probs=49.5

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPENG---------EAWNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                      ..++..-...+...|.|+.|+-....++....+++         .++..+|.+++..|+|..|...|+++++.
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            34566667778888999999998888766543332         36788899999999999999999998765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.00053  Score=59.06  Aligned_cols=116  Identities=9%  Similarity=0.140  Sum_probs=86.1

Q ss_pred             hcCC-HHHHHHHHHHHHhhCCCChhHHHHHHHHHH--Hc-cCHHHHHHHHHHHHhc--------CCCc----------HH
Q 039523           28 NRGE-YETSKILREAAMALNSLYPDGWFALGAAAL--KA-RDVEKALDVFTRAVQL--------DPEN----------GE   85 (244)
Q Consensus        28 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~a~~~--------~p~~----------~~   85 (244)
                      ..++ ++.|+..+++....+|.... .+..+.+..  .. .+--+|+..+.+.++.        .+.+          ..
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            3455 68899999999999996543 332333222  22 2345677777776632        2222          23


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523           86 AWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus        86 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                      .+...+..+..+|+++-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45556778889999999999999999999999999999999999999999999776655

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.0016  Score=56.14  Aligned_cols=108  Identities=19%  Similarity=0.114  Sum_probs=77.8

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhh--------CCCC----------hhHHHHHHHHH
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAY---NRGEYETSKILREAAMAL--------NSLY----------PDGWFALGAAA   60 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~   60 (244)
                      +..+++..+.+|.....+ ..+.+..   ...+--+|+....+.++.        .+.+          ...+..-+..+
T Consensus       269 ~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FL  347 (754)
T 4gns_B          269 IDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFL  347 (754)
T ss_dssp             HHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHH
Confidence            456777777777654322 2222222   123455677777777642        2222          22455567788


Q ss_pred             HHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039523           61 LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEA  110 (244)
Q Consensus        61 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  110 (244)
                      +..|+++-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus       348 l~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          348 LNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999777654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.11  E-value=0.026  Score=39.01  Aligned_cols=115  Identities=11%  Similarity=0.042  Sum_probs=82.4

Q ss_pred             hcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 039523           28 NRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAF  107 (244)
Q Consensus        28 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  107 (244)
                      +-.+|+.++-.-.-   +.|..+.....++.++.-.|++..|+-.+.+     -+...+.+.-+.|+.+.++|..|+.++
T Consensus        14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~l   85 (242)
T 3kae_A           14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSL   85 (242)
T ss_dssp             HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566665433222   2344456667788888889999988876643     345667777888999999999999999


Q ss_pred             HHHHh--c---------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          108 KEALK--L---------------KRNGWQ-LWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       108 ~~a~~--~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ++.+.  .               +|.+-+ .+..+|.++...|+.++|+.++.....+.|-
T Consensus        86 e~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A           86 ESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            98883  2               233333 4566799999999999999999999988875

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.09  E-value=0.0074  Score=49.65  Aligned_cols=80  Identities=14%  Similarity=-0.012  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      ..+..+|........+..|..+|.+|....|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+.+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35667888888888899999999999999999999999999999999999999998888888776677777777666643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.04  E-value=0.045  Score=40.86  Aligned_cols=121  Identities=14%  Similarity=0.038  Sum_probs=85.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 039523           24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEA  103 (244)
Q Consensus        24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A  103 (244)
                      ...++.|+.++|+......++.+|.+......+...+.-.|+++.|.+.++.+.+++|.....-..+..+.       .|
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~a   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KA   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HH
Confidence            34567899999999999999999999999999999999999999999999999999997654332211110       11


Q ss_pred             HHHHHHHHhc--C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523          104 FIAFKEALKL--K------RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus       104 ~~~~~~a~~~--~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      ...=.+.+.-  .      |........-+......|+.++|...-.++++..|..
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence            1111111111  1      1122333444666777899999999999999988773

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.05  Score=37.98  Aligned_cols=109  Identities=9%  Similarity=-0.006  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      |++.-+.+   ....|+++.|.+..+..     ++...|..+|...+..|+++-|.++|.++-.        +-.+..+|
T Consensus         7 D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly   70 (177)
T 3mkq_B            7 DPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY   70 (177)
T ss_dssp             CHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred             ChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence            34444444   35789999999887765     6788999999999999999999999988643        22333445


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039523           95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMV  144 (244)
Q Consensus        95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  144 (244)
                      .-.|+.+.-....+.+.....     +.....++..+|+++++++.|.+.
T Consensus        71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            556665444444333332221     122234455666777766666443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.88  E-value=0.013  Score=48.18  Aligned_cols=79  Identities=20%  Similarity=0.186  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD  130 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  130 (244)
                      .+..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            4557788888888889999999999999999999999999999999999899999888888877778888888777654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.84  E-value=0.06  Score=37.25  Aligned_cols=29  Identities=10%  Similarity=0.105  Sum_probs=21.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          122 ENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ...+..+..+|-.++...+|....+.+|.
T Consensus       212 a~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          212 SNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence            34566777888888888888888777774

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.79  E-value=0.045  Score=43.57  Aligned_cols=134  Identities=10%  Similarity=-0.100  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------------h---CCCCh------------------hHH--
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMA-------------------L---NSLYP------------------DGW--   53 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~-------------------~---~p~~~------------------~~~--   53 (244)
                      ..+.+.+|..|...|+.++-.+++.....                   .   -|+..                  ..|  
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999988877766554321                   1   12221                  112  


Q ss_pred             ----HHHHHHHHHccCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC---
Q 039523           54 ----FALGAAALKARDVEKALDVFTRAVQLDPE------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLK---RNG---  117 (244)
Q Consensus        54 ----~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~---  117 (244)
                          ..+|..|+..|+|.+|.+.+.+..+....      -.+++..-..++...+++.++...+.++....   +.+   
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence                27899999999999999999888764221      23566777888999999999999998886552   122   


Q ss_pred             -HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcC
Q 039523          118 -WQLWENYSHVAL-DVGNIGQALEAVQMVLNITN  149 (244)
Q Consensus       118 -~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p  149 (244)
                       +.....-|..+. ..++|..|...|-++++-..
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence             234455688888 89999999999998876543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.76  E-value=0.057  Score=43.05  Aligned_cols=86  Identities=14%  Similarity=0.016  Sum_probs=66.5

Q ss_pred             HHccCHHHHHHHHHHHHhcCCCc--------H--------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 039523           61 LKARDVEKALDVFTRAVQLDPEN--------G--------------EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW  118 (244)
Q Consensus        61 ~~~g~~~~A~~~~~~a~~~~p~~--------~--------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  118 (244)
                      ...|+.+.|...+.+++.+....        .              .+...++..+...|++.+++..+..++..+|-+-
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E  205 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE  205 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            34577778888888887764211        0              2334456677889999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523          119 QLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus       119 ~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      .++..+..++...|+..+|+..|+++.+
T Consensus       206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          206 PLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999988887644

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.74  E-value=0.055  Score=43.12  Aligned_cols=91  Identities=12%  Similarity=0.099  Sum_probs=75.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCC--------h--------------hHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523           22 LARSAYNRGEYETSKILREAAMALNSLY--------P--------------DGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus        22 la~~~~~~~~~~~A~~~~~~al~~~p~~--------~--------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      .|......|+.+.|...+++++.+....        .              .+...++..+...|++.+++..+..++..
T Consensus       121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~  200 (388)
T 2ff4_A          121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE  200 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3444456789999999999999875221        1              13346677788999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALK  112 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  112 (244)
                      +|.+-.+|..+-.++...|+..+|+..|+++.+
T Consensus       201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999987644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.69  E-value=0.11  Score=45.21  Aligned_cols=127  Identities=20%  Similarity=0.151  Sum_probs=91.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH
Q 039523           24 RSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL--------DPENGEAWNIIACLHM   95 (244)
Q Consensus        24 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~   95 (244)
                      ......|+++.|.+..+     ..++...|..+|..+.+.|+++.|+++|.++-..        ...+...+..++....
T Consensus       660 ~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~  734 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAE  734 (814)
T ss_dssp             HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence            34567899999988754     3457889999999999999999999999976322        2566777888899999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ..|++..|...|.+.     .+   ......+|...+++++|...-++   ..|........+......+.
T Consensus       735 ~~~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~  794 (814)
T 3mkq_A          735 TTGKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLI  794 (814)
T ss_dssp             HTTCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHH
Confidence            999999998887652     11   23456778999999999887654   44543112334444444443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.63  E-value=0.3  Score=43.74  Aligned_cols=119  Identities=7%  Similarity=-0.061  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQL----DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK-RNGWQLWENYS  125 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la  125 (244)
                      ..+..+...+.+.|+.++|...+....+.    ..-+...|..+...+.+.|+.++|.+.|++..... ..+...|..+.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            35788899999999999999999765432    23467789999999999999999999999887652 23577788888


Q ss_pred             HHHHHcCCH-HHHHHHHHHHHhh--cCCc-----hhhHHHHHHHHHHhcccc
Q 039523          126 HVALDVGNI-GQALEAVQMVLNI--TNNK-----RIDTELLERIVLNLEGRT  169 (244)
Q Consensus       126 ~~~~~~~~~-~~A~~~~~~al~~--~p~~-----~~~~~~l~~~~~~~~~~~  169 (244)
                      .++.+.|+. ++|...+++..+.  .|+.     .........++..+.+..
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~  259 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK  259 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence            888888874 7888999888765  3541     123333445555555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.46  E-value=0.043  Score=47.76  Aligned_cols=107  Identities=24%  Similarity=0.226  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN   98 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~   98 (244)
                      ...+...+...|.++.|+...+        ++...+   ......|++++|.+..+     ..+++..|..+|..+...|
T Consensus       632 ~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~  695 (814)
T 3mkq_A          632 LTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRF  695 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcC
Confidence            3566677778888888876542        333223   34578899999999764     3467899999999999999


Q ss_pred             ChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039523           99 KSKEAFIAFKEALKL--------KRNGWQLWENYSHVALDVGNIGQALEAV  141 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~  141 (244)
                      +++.|..+|.++-..        ...+...+..++......|+++.|..+|
T Consensus       696 ~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~  746 (814)
T 3mkq_A          696 NFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY  746 (814)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence            999999999875221        2345555566666666666666655444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.43  E-value=0.14  Score=45.70  Aligned_cols=97  Identities=5%  Similarity=-0.101  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCcHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMA-----LNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-PENGEAWNII   90 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l   90 (244)
                      ..+..+-..+.+.|+.++|...+.+.-+     ..| +...|..+...+.+.|++++|.++|++..... .-+...|..+
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            4578888999999999999999977543     344 78899999999999999999999999987643 2366778888


Q ss_pred             HHHHHHcCCh-HHHHHHHHHHHhcC
Q 039523           91 ACLHMIKNKS-KEAFIAFKEALKLK  114 (244)
Q Consensus        91 ~~~~~~~~~~-~~A~~~~~~a~~~~  114 (244)
                      ..++.+.|+. ++|.+++++.....
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            8899999985 78889999887763

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.19  E-value=0.13  Score=47.08  Aligned_cols=118  Identities=13%  Similarity=0.017  Sum_probs=82.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC---------------------
Q 039523           22 LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD---------------------   80 (244)
Q Consensus        22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------------   80 (244)
                      +...+...+.++-+..    .+...|.++...+.+|.++...|++++|..+|.++-..-                     
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            4444555566655443    445667777777888999999999999999888763211                     


Q ss_pred             --CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 039523           81 --PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-GW----QLWENYSHVALDVGNIGQALEAVQM  143 (244)
Q Consensus        81 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~----~~~~~la~~~~~~~~~~~A~~~~~~  143 (244)
                        ...+..|..+..++.+.|.++.+++..+.|++..+. +.    ..|.++-..+...|+|++|...+..
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence              112345666777888888899999888888877543 32    2577777888888999988766643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.018  Score=47.27  Aligned_cols=128  Identities=11%  Similarity=0.051  Sum_probs=59.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh-----------hCCCChhHHHHHHHHHHHccCHHHHH----------HHHHHHH----
Q 039523           23 ARSAYNRGEYETSKILREAAMA-----------LNSLYPDGWFALGAAALKARDVEKAL----------DVFTRAV----   77 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~a~----   77 (244)
                      -..++..+++++|..+-...+.           +++-...+|+.++.++...|+.....          ..+..++    
T Consensus       143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~  222 (523)
T 4b4t_S          143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS  222 (523)
T ss_dssp             ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence            3345678889998887765541           23445678888888888888765532          1222222    


Q ss_pred             -hcCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523           78 -QLDPEN-GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG-------WQLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus        78 -~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                       ..++.. ...+..+-..|...+.+++|..+..++.  .|..       ...++.+|.++..+++|.+|.+++..|++..
T Consensus       223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence             233332 4456667788999999999999999885  3321       4567788999999999999999999999988


Q ss_pred             CCch
Q 039523          149 NNKR  152 (244)
Q Consensus       149 p~~~  152 (244)
                      |...
T Consensus       301 p~~~  304 (523)
T 4b4t_S          301 PHNS  304 (523)
T ss_dssp             SCSS
T ss_pred             Ccch
Confidence            8643

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.094  Score=36.61  Aligned_cols=92  Identities=15%  Similarity=0.168  Sum_probs=63.7

Q ss_pred             HHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523            5 MKKLWKF--QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus         5 ~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      |+.|+++  .-++...|..+|......|+++-|..+|.++-.        +..+..+|.-.|+.++-.+.-+.+..... 
T Consensus        21 l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~-   91 (177)
T 3mkq_B           21 LDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRED-   91 (177)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc-
Confidence            4445444  336788999999999999999999999998632        23456677778887765555554443332 


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523           83 NGEAWNIIACLHMIKNKSKEAFIAFKE  109 (244)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~  109 (244)
                          +.....++...|+++++++.|.+
T Consensus        92 ----~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           92 ----FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             ----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCHHHHHHHHHH
Confidence                22334567788888888877654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.16  E-value=0.053  Score=40.48  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             HHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 039523           59 AALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQ  119 (244)
Q Consensus        59 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  119 (244)
                      ..++.|+.++|++.+...++.+|.+......+..+++-.|+++.|.+.++.+.+++|....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            4567888899999999999999999998888889999999999999999888888887643

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.96  E-value=0.11  Score=41.39  Aligned_cols=114  Identities=14%  Similarity=-0.015  Sum_probs=81.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----hhHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCcH----HH
Q 039523           20 RSLARSAYNRGEYETSKILREAAMALNSL--Y----PDGWFALGAAALKARDVEKALDVFTRAVQLD---PENG----EA   86 (244)
Q Consensus        20 ~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~----~~   86 (244)
                      ..+|..|+..|+|.+|...+.+..+....  +    ..++..-..+|...|++.++...+.++....   +.+|    ..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            37899999999999999999988875322  2    2456667788999999999999999886542   2233    34


Q ss_pred             HHHHHHHHH-HcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCC
Q 039523           87 WNIIACLHM-IKNKSKEAFIAFKEALKLKRNG-----WQLWENYSHVALDVGN  133 (244)
Q Consensus        87 ~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~~~  133 (244)
                      ...-|..+. ..++|..|...|-+++......     ..+...++.|....++
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence            455678888 8999999999998887543221     2344455555555555

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.037  Score=44.74  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=76.3

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCH----H
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDP---ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLK--RNGW----Q  119 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~----~  119 (244)
                      -..++..+|..+.+.|++++|.++|.++.....   ...+.++....++...+++..+...+.++....  ..++    .
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            345778899999999999999999998876533   345778888888999999999999998886542  1222    2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523          120 LWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       120 ~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      .....|.++...++|..|...|-.++...
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            34455777788899999999888877654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.79  E-value=0.23  Score=45.37  Aligned_cols=124  Identities=10%  Similarity=-0.055  Sum_probs=87.9

Q ss_pred             HHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----------------------CCChhHHHHHHHHHHHcc
Q 039523            8 LWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALN-----------------------SLYPDGWFALGAAALKAR   64 (244)
Q Consensus         8 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~la~~~~~~g   64 (244)
                      .+..-|.++..-+.+|.++...|++++|..+|+++-..-                       ...+..+..+..++.+.|
T Consensus       834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~  913 (1139)
T 4fhn_B          834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES  913 (1139)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred             HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence            344467788888999999999999999999998873211                       111245677888888999


Q ss_pred             CHHHHHHHHHHHHhcCC-CcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523           65 DVEKALDVFTRAVQLDP-ENG----EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG  132 (244)
Q Consensus        65 ~~~~A~~~~~~a~~~~p-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~  132 (244)
                      .++.+++....|++..+ ++.    ..|.++-..+...|+|++|...+...-... ....++..+.......|
T Consensus       914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~  985 (1139)
T 4fhn_B          914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQG  985 (1139)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCC
Confidence            99999999999998654 332    267788888999999999988775432221 22444555544444333

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.099  Score=42.27  Aligned_cols=100  Identities=9%  Similarity=-0.049  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCcHH----H
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSL---YPDGWFALGAAALKARDVEKALDVFTRAVQLD--PENGE----A   86 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~----~   86 (244)
                      ..++..+|..|...|+++.|.+.|.++......   -...+.....++...+++..+...+.++....  ..++.    .
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            457889999999999999999999999876433   34678888899999999999999999986542  22222    3


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523           87 WNIIACLHMIKNKSKEAFIAFKEALKLKR  115 (244)
Q Consensus        87 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  115 (244)
                      ....|.++...++|..|...|..++....
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            44557778889999999999988876543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.56  Score=38.06  Aligned_cols=98  Identities=10%  Similarity=0.066  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CC----hhHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCcH--
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNS--LY----PDGWFALGAAALKARDVEKALDVFTRAVQ---LDPENG--   84 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~--   84 (244)
                      ++....|+..+...|++.+|...+.......-  .+    ..++.....++...+++.+|...+.++..   ..+..+  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            45667899999999999999999988764321  11    34677788889999999999999988642   233333  


Q ss_pred             --HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           85 --EAWNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        85 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                        ..+...|.++...++|.+|..+|..+...
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              35667788999999999999999888764

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.87  E-value=0.67  Score=39.29  Aligned_cols=125  Identities=8%  Similarity=0.005  Sum_probs=85.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSLYPD----GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      ..+.......+.+.|...+.......+-+..    .+..++.-....+...++...+.+.....+++.......+ ...+
T Consensus       219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r-~Alr  297 (618)
T 1qsa_A          219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALG  297 (618)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHH-HHHH
Confidence            3455555566889999988887654443332    2223333334445356777777776655544444434444 4456


Q ss_pred             cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      .|+++.|...+...-..........+.+|..+...|+.++|..+|+++..
T Consensus       298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            79999999999876554445678899999999999999999999999985

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.97  Score=36.66  Aligned_cols=96  Identities=11%  Similarity=0.031  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCCH----
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLD----P--ENGEAWNIIACLHMIKNKSKEAFIAFKEALK---LKRNGW----  118 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~----p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~----  118 (244)
                      ....|+.++...|++.+|...+.....-.    +  .-..++.....++...+++..|...+.++..   ..+..+    
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~  218 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL  218 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence            34688999999999999999998875421    1  1245777888999999999999999988642   233333    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523          119 QLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus       119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      ..+...|.++...++|.+|..+|..++..
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            45667789999999999999999998864

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.48  Score=39.03  Aligned_cols=104  Identities=10%  Similarity=0.001  Sum_probs=58.6

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHH----------HHHHHHHHhh-----CCC-ChhHHHHHHHHHHHccCHHHHHHHHHH
Q 039523           12 QMISQLELRSLARSAYNRGEYETS----------KILREAAMAL-----NSL-YPDGWFALGAAALKARDVEKALDVFTR   75 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A----------~~~~~~al~~-----~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~   75 (244)
                      |+-.+.+|+..+.++...|+....          +..+..+++.     ++. ....+..+-..|...+.++.|..+..+
T Consensus       177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk  256 (523)
T 4b4t_S          177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK  256 (523)
T ss_dssp             --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence            455677888888888877776542          2233333332     221 245677888899999999999999999


Q ss_pred             HHhcCCCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           76 AVQLDPEN-------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        76 a~~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      +.  .|.+       ...++.+|.++..+++|.+|.+++..|++..|.+
T Consensus       257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            85  3322       3456778999999999999999999999887643

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.80  E-value=2.7  Score=37.69  Aligned_cols=30  Identities=13%  Similarity=0.009  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 039523          119 QLWENYSHVALDVGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       119 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~  148 (244)
                      ..|.....++...+-++-+++..+.|+...
T Consensus       898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~  927 (950)
T 4gq2_M          898 CYYLHLSKKLFEESAYIDALEFSLLADASK  927 (950)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence            356666777777777777777777777653

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=89.87  E-value=3.9  Score=29.05  Aligned_cols=66  Identities=8%  Similarity=-0.023  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQ--LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN  116 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  116 (244)
                      ..+|..++..+ ..+...++.+.|.-+..  +.-..+..|...|..+...|++.+|...|+.+++..-.
T Consensus        80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~  147 (202)
T 3esl_A           80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR  147 (202)
T ss_dssp             HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence            34666666554 23445667777665554  45566777888888888888888888888888887543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.25  E-value=3.5  Score=27.52  Aligned_cols=55  Identities=13%  Similarity=0.004  Sum_probs=36.5

Q ss_pred             HHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           59 AALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        59 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                      .....|+-++-.+.+...+.-++-++..++.+|.+|.+.|+..+|-+.+.+|-+.
T Consensus       100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3445666666666666655656666777777777777777777777777776654

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=86.82  E-value=5.7  Score=27.13  Aligned_cols=76  Identities=11%  Similarity=-0.007  Sum_probs=49.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHH------HHHHHHHHHcCCHHHHHHHHHHHHhhc---CC--chh
Q 039523           88 NIIACLHMIKNKSKEAFIAFKEALKLKRNG---WQLW------ENYSHVALDVGNIGQALEAVQMVLNIT---NN--KRI  153 (244)
Q Consensus        88 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~------~~la~~~~~~~~~~~A~~~~~~al~~~---p~--~~~  153 (244)
                      +..+..++..|+|-+|.+.++.+....+..   ...|      ...|......|+...|...+.+++..-   |.  ...
T Consensus        36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GI  115 (161)
T 2ijq_A           36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGV  115 (161)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGB
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCc
Confidence            445666777788888888888888776543   2222      233445667899999999999998743   22  234


Q ss_pred             hHHHHHHHHH
Q 039523          154 DTELLERIVL  163 (244)
Q Consensus       154 ~~~~l~~~~~  163 (244)
                      +...+.....
T Consensus       116 Dv~~L~~~~~  125 (161)
T 2ijq_A          116 DLLDVRTTVT  125 (161)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5555444333

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.48  E-value=17  Score=32.59  Aligned_cols=88  Identities=11%  Similarity=0.013  Sum_probs=47.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C-------------------
Q 039523           22 LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-P-------------------   81 (244)
Q Consensus        22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-------------------   81 (244)
                      +...+...|.++-+    ++.+...|.++..-+.+|.+++..|++++|..+|+++-..- .                   
T Consensus       816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            34444555555433    23445555566556666666666666666666666543210 0                   


Q ss_pred             -C--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           82 -E--NGEAWNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        82 -~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                       .  ....|.....++...+-++.++...+.|++.
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~  926 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS  926 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence             0  0124445555566666666666666666653

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=84.86  E-value=3.9  Score=23.76  Aligned_cols=29  Identities=7%  Similarity=0.195  Sum_probs=20.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523          122 ENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       122 ~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ..+|..+...|++++|..+|-+|+...|+
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            34566667777777777777777777766

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=84.84  E-value=17  Score=30.83  Aligned_cols=120  Identities=11%  Similarity=-0.032  Sum_probs=78.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------------C--
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD-----------------P--   81 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------------p--   81 (244)
                      .++...++.|++..|...+.+.-..........+.+|.++...|+.++|...|.++....                 |  
T Consensus       290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~  369 (618)
T 1qsa_A          290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID  369 (618)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCC
Confidence            334445567899998888876655434456677888888888999999988888765421                 0  


Q ss_pred             -C----c----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039523           82 -E----N----GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ  142 (244)
Q Consensus        82 -~----~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  142 (244)
                       .    .    ...-...+..+...|....|...+.......  +..-...++.+....|.+..++....
T Consensus       370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~  437 (618)
T 1qsa_A          370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI  437 (618)
T ss_dssp             CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence             0    0    0112344566777888888887777766542  23444566777777777777665443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=83.91  E-value=7.5  Score=25.96  Aligned_cols=120  Identities=12%  Similarity=-0.007  Sum_probs=82.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChhHH-----------HHHHHHHH---------HccCHHHHHHHHHHHHhcCCC
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLYPDGW-----------FALGAAAL---------KARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~la~~~~---------~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      |.-+...|..++..+...+...-.+-...-|           -.+-.++-         .-|+...-+.+|-+.-   ..
T Consensus        14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n---~~   90 (172)
T 1wy6_A           14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN---TL   90 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT---CC
T ss_pred             HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc---ch
Confidence            4555667888888888888877665322211           12223333         3466777777775532   22


Q ss_pred             cHHHHHHHH-HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           83 NGEAWNIIA-CLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        83 ~~~~~~~l~-~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      +.  +..+| ..+..+|+-++-.+.+...+.-.+-++..+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus        91 se--~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           91 NE--HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             CH--HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HH--HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            22  23333 45678888888888888766767778999999999999999999999999998765

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=82.51  E-value=5.3  Score=23.18  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=15.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSL   48 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~   48 (244)
                      .+|..+...|++++|...|-+|+...|.
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            4455555555555555555555555553

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=82.50  E-value=5.6  Score=27.26  Aligned_cols=61  Identities=16%  Similarity=0.249  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQ--LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                      .+|..++...   ++   +.++|..+..  +.-..+..|...|..+...|++.+|.+.|+.+++.....
T Consensus        67 klWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P  129 (164)
T 2wvi_A           67 NLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP  129 (164)
T ss_dssp             HHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            4566666543   33   4455555443  455678888889999999999999999999999876543

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=81.14  E-value=6.5  Score=28.01  Aligned_cols=52  Identities=8%  Similarity=-0.063  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHHHHHHccCHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPD-----GWFALGAAALKARDVE   67 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~   67 (244)
                      ....+.+|..++..++|.+|...+..|+...|....     ++..+.-+-+-.|++.
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP   70 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP   70 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence            456789999999999999999999999999886643     2333444445566643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-10
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-07
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.001
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	7e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	6e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 29/144 (20%), Positives = 60/144 (41%)

Query: 4   AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA 63
           A  +         +   +LA   Y +G  + +      A+ L   +PD +  L  A  + 
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284

Query: 64  RDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123
             V +A D +  A++L P + ++ N +A +   +   +EA   +++AL++         N
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 124 YSHVALDVGNIGQALEAVQMVLNI 147
            + V    G + +AL   +  + I
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-11
 Identities = 24/129 (18%), Positives = 52/129 (40%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
             +L         ++ +      A++L+  +      L     +   ++ A+D + RA++
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQAL 138
           L P   +A+  +A     K    EA   +  AL+L         N +++  + GNI +A+
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325

Query: 139 EAVQMVLNI 147
              +  L +
Sbjct: 326 RLYRKALEV 334

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 8e-11
 Identities = 29/165 (17%), Positives = 64/165 (38%)

Query: 1   MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAA 60
                 K  + Q    +   +L      +GE   +    E A+ L+  + D +  LG   
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213

Query: 61  LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120
            +AR  ++A+  + RA+ L P +      +AC++  +     A   ++ A++L+ +    
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

Query: 121 WENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNL 165
           + N ++   + G++ +A +     L +          L  I    
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 7e-10
 Identities = 21/115 (18%), Positives = 54/115 (46%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
             +LA +   +G    ++     A+ L   + D    L     +  ++E+A+ ++ +A++
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN 133
           + PE   A + +A +   + K +EA + +KEA+++       + N  +   ++ +
Sbjct: 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 4e-09
 Identities = 19/105 (18%), Positives = 46/105 (43%)

Query: 22  LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP 81
           LA   Y  G++E ++                   L +   + R ++++    T A++ +P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 82  ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126
              EA++ +  ++  + + +EA   ++ AL+LK +    + N + 
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 5e-09
 Identities = 13/76 (17%), Positives = 28/76 (36%)

Query: 52  GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEAL 111
           G   L     +A D E A     +  + +P+N     +++ +H    +   +      A+
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 112 KLKRNGWQLWENYSHV 127
           K      + + N  +V
Sbjct: 61  KQNPLLAEAYSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 28/147 (19%), Positives = 51/147 (34%)

Query: 1   MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAA 60
            + A     ++          L       G  E +K     A+     +   W  LG   
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179

Query: 61  LKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQL 120
               ++  A+  F +AV LDP   +A+  +  +         A  A+  AL L  N   +
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

Query: 121 WENYSHVALDVGNIGQALEAVQMVLNI 147
             N + V  + G I  A++  +  + +
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIEL 266

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 7e-07
 Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 2   MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAAL 61
                   +        L +LA     +G  E +  L   A+ +   +      L +   
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350

Query: 62  KARDVEKALDVFTRAVQLDPENGEAW-NIIACLHMIKN 98
           +   +++AL  +  A+++ P   +A+ N+   L  +++
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 55.8 bits (134), Expect = 5e-10
 Identities = 14/119 (11%), Positives = 37/119 (31%)

Query: 57  GAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
              AL    +++AL++   A++  P++    +    L  I    + A     +++KL   
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 117 GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLEGRTSVIESD 175
                    H+           +       +  N+ +   L+   +  +      +   
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 55.8 bits (134), Expect = 5e-10
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 1/121 (0%)

Query: 23  ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE 82
            ++A + G+ + +  L   A+  +        +         D E+A +   ++++L PE
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 83  NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR-NGWQLWENYSHVALDVGNIGQALEAV 141
                + +  L       K+       A  L             ++++   +  Q  E  
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

Query: 142 Q 142
            
Sbjct: 123 L 123

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 25/109 (22%), Positives = 40/109 (36%)

Query: 53  WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALK 112
            F  G   L+  D+  A+ +F  AVQ DP++ EAW  +        +   A  A +  L+
Sbjct: 22  PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 81

Query: 113 LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI 161
           LK +        +    +     QA E ++  L  T          E  
Sbjct: 82  LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 130

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 1/133 (0%)

Query: 9   WKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEK 68
                I       L       GEY+ +     AA+++       W  LGA        E+
Sbjct: 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 224

Query: 69  ALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA 128
           A+  + RA++L P    +   +    +     +EA   F EAL ++R           ++
Sbjct: 225 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284

Query: 129 LDVG-NIGQALEA 140
            ++   +  AL  
Sbjct: 285 ENIWSTLRLALSM 297

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 6e-07
 Identities = 20/99 (20%), Positives = 37/99 (37%)

Query: 18  ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV 77
           EL+      +   +Y  +      A+  N L    +       LK +  E+AL    RA+
Sbjct: 6   ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65

Query: 78  QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
           +LD ++ +A   +    +      EA    + A  L + 
Sbjct: 66  ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 14/92 (15%), Positives = 35/92 (38%)

Query: 56  LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115
            G      R   +A   + RA+  +P     +   A  ++   + ++A    + AL+L  
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 116 NGWQLWENYSHVALDVGNIGQALEAVQMVLNI 147
              +         L++ +  +A+  +Q   ++
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 5/132 (3%)

Query: 43  MALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKE 102
           + L+       F LG   L+    ++A+    RA  L  E    +        I +  + 
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-----DDIPSALRI 119

Query: 103 AFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIV 162
           A      +++ +R   +   +     L      + LE  Q       +          I 
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

Query: 163 LNLEGRTSVIES 174
              +   + ++ 
Sbjct: 180 AKHDKYMADMDE 191

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 19  LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ 78
              L   +  +         + ++ +           LG  A       +A   +  A Q
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAAQ 180

Query: 79  LDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123
           L P NG+ +N +A L   K         +  ++ +K        N
Sbjct: 181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN 225

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 5/81 (6%), Positives = 17/81 (20%), Gaps = 2/81 (2%)

Query: 67  EKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSH 126
            + L        +D       + +  +   +  +         +            +   
Sbjct: 103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGD 160

Query: 127 VALDVGNIGQALEAVQMVLNI 147
           +A       QA    +    +
Sbjct: 161 IARYRNQTSQAESYYRHAAQL 181

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 7e-05
 Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 41  AAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIA-CLHMIKNK 99
             +  +  + D +    A   +    E+A  +   A++L+  N   W+     L  ++  
Sbjct: 34  VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93

Query: 100 SKEAFIAFKEALKLKRNGWQLW 121
             E        ++ +   +Q+W
Sbjct: 94  LHEEMNYITAIIEEQPKNYQVW 115

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 17  LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
           + L +    A ++ +++ +    +A  A+   +    F +G      +++ +A   FTR+
Sbjct: 6   ISLWNEGVLAADKKDWKGAL---DAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS 62

Query: 77  VQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN----------------GWQL 120
           +  D     A+     L+    K   A    KEAL   R                   ++
Sbjct: 63  INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 122

Query: 121 WENYSHVALDVGNIGQALEAVQMVLNI 147
             N + +        +A E + +  ++
Sbjct: 123 LYNIAFMYAKKEEWKKAEEQLALATSM 149

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 36/84 (42%)

Query: 56  LGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR 115
           LG  A K +D + AL  + +A +LDP N       A ++  K    +     ++A+++ R
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 116 NGWQLWENYSHVALDVGNIGQALE 139
              + +   +     +GN     E
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEE 93

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 17  LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRA 76
           L+ + L   AY + +++T+    + A  L+           A   +  D  K  ++  +A
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 77  VQLDPENGE-------AWNIIACLHMIKNKSKEAFIAFKEALKLKRN 116
           +++  EN E       A+  I   +  + K K+A   + ++L   R 
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 8/120 (6%), Positives = 28/120 (23%), Gaps = 1/120 (0%)

Query: 4   AMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA 63
           +  +    + +   EL  L ++A+     + S       +   +            +   
Sbjct: 197 SGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL 255

Query: 64  RDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN 123
           +   ++          +        ++          KE    F     +        ++
Sbjct: 256 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 46  NSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK 101
                D  F L     + ++ EKAL      +Q +P+N +A  +     +I    K
Sbjct: 68  KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER---LIDKAMK 120

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 2/200 (1%)

Query: 35  SKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH 94
            +IL   A+  +       +  G           A + F++A+ + P+  E +N +    
Sbjct: 23  EQILASRALT-DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 81

Query: 95  MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID 154
                   A+ AF   L+L         N        G    A + +       +     
Sbjct: 82  TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDPF 140

Query: 155 TELLERIVLNLEGRTSVIESDSCRTTHNVNSTNNTCAKDLHVESVHVSSLEGSIMGRSQE 214
             L   +           E        +          + ++ ++   +L   +   + +
Sbjct: 141 RSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATD 200

Query: 215 NEHLMEFLWKILQQAAHVYM 234
           N  L E L +        Y+
Sbjct: 201 NTSLAEHLSETNFYLGKYYL 220

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 11/68 (16%), Positives = 19/68 (27%)

Query: 21  SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD 80
            L +S     E    KIL +      S   +  + L     K  +   A        + +
Sbjct: 44  GLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103

Query: 81  PENGEAWN 88
             N +   
Sbjct: 104 RNNKQVGA 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.89
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.84
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.78
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.78
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.76
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.72
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.71
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.71
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.69
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.68
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.68
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.63
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.61
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.56
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.52
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.47
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.46
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.43
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.41
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.33
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.24
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.22
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.21
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.1
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.76
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.73
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.68
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.52
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.33
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.66
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.3
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	91.94
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	87.96
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	84.25
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.86
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.4

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-23  Score=161.78  Aligned_cols=162  Identities=9%  Similarity=0.062  Sum_probs=150.7

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRG-EYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      |+.++++|++++|++..+|..+|.++...| ++++|+.++++++..+|++..+|..+|.++...|++++|++.+.++++.
T Consensus        62 Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~  141 (315)
T d2h6fa1          62 AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ  141 (315)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh
Confidence            578999999999999999999999999876 5999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhcCCchh
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGN------IGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~  153 (244)
                      +|++..+|.++|.++...|++++|+..++++++++|++..+|.++|.++...+.      +++|+..+.++++++|++..
T Consensus       142 dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~  221 (315)
T d2h6fa1         142 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES  221 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchH
Confidence            999999999999999999999999999999999999999999999999888776      67899999999999999776


Q ss_pred             hHHHHHHHH
Q 039523          154 DTELLERIV  162 (244)
Q Consensus       154 ~~~~l~~~~  162 (244)
                      .+..+..+.
T Consensus       222 ~~~~l~~ll  230 (315)
T d2h6fa1         222 AWNYLKGIL  230 (315)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666555554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.9e-23  Score=162.15  Aligned_cols=163  Identities=18%  Similarity=0.203  Sum_probs=124.9

Q ss_pred             chHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 039523            2 MPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDP   81 (244)
Q Consensus         2 i~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p   81 (244)
                      +..|+++...+|..+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.+++++...|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  302 (388)
T d1w3ba_         223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP  302 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            45666666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523           82 ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                      .+...+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++..+..++.+
T Consensus       303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            77777777777788888888888888888888888888888888888888888888888888888888776666666555


Q ss_pred             HHH
Q 039523          162 VLN  164 (244)
Q Consensus       162 ~~~  164 (244)
                      ...
T Consensus       383 ~~~  385 (388)
T d1w3ba_         383 LKE  385 (388)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-22  Score=155.04  Aligned_cols=166  Identities=12%  Similarity=0.106  Sum_probs=150.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+.+|+++++.+|+++.+|..+|.++...|++++|+..+.++++.+|++...+..+|.++...|++++|++.+++++..+
T Consensus        38 A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  117 (323)
T d1fcha_          38 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT  117 (323)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999888877655


Q ss_pred             CC---------------------------------------------------cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523           81 PE---------------------------------------------------NGEAWNIIACLHMIKNKSKEAFIAFKE  109 (244)
Q Consensus        81 p~---------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~  109 (244)
                      |.                                                   ++.++..+|.++...|++++|+..+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  197 (323)
T d1fcha_         118 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA  197 (323)
T ss_dssp             TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccc
Confidence            43                                                   245678899999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          110 ALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       110 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ++..+|+++.+|..+|.++...|++++|+.+|+++++++|+.+..+..++......+
T Consensus       198 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  254 (323)
T d1fcha_         198 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG  254 (323)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             ccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999998776666655554444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.9e-22  Score=149.17  Aligned_cols=152  Identities=14%  Similarity=0.064  Sum_probs=134.0

Q ss_pred             chHHHHHHhh----ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523            2 MPAMKKLWKF----QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         2 i~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      +..+++++..    +|..+.+++.+|.+|...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++
T Consensus        19 l~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   98 (259)
T d1xnfa_          19 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL   98 (259)
T ss_dssp             HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHH
Confidence            4456666654    455677999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---------------------------------------
Q 039523           78 QLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW---------------------------------------  118 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---------------------------------------  118 (244)
                      +++|+++.++..+|.++..+|++++|+..++++++.+|++.                                       
T Consensus        99 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (259)
T d1xnfa_          99 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV  178 (259)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHH
Confidence            99999999999999999999999999999999988876542                                       


Q ss_pred             -------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523          119 -------------------------------QLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus       119 -------------------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                                                     .+++++|.++...|++++|+.+|++++..+|++..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         179 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence                                           35677899999999999999999999999998543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.6e-22  Score=152.47  Aligned_cols=152  Identities=23%  Similarity=0.271  Sum_probs=140.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--------------------------------
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSL--------------------------------   48 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------------------------------   48 (244)
                      |+.+|+++++++|+++..+..+|.++...|++++|+..+++++...|.                                
T Consensus        72 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (323)
T d1fcha_          72 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL  151 (323)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred             HHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhH
Confidence            578899999999999999999999999999999999888877655443                                


Q ss_pred             -------------------ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039523           49 -------------------YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKE  109 (244)
Q Consensus        49 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  109 (244)
                                         ++.++..+|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|++
T Consensus       152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  231 (323)
T d1fcha_         152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR  231 (323)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHH
Confidence                               2345778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523          110 ALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus       110 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      +++.+|+++.++..+|.++...|++++|+..|+++++++|++.
T Consensus       232 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         232 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence            9999999999999999999999999999999999999999844

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-21  Score=151.66  Aligned_cols=165  Identities=16%  Similarity=0.123  Sum_probs=150.2

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..++++++.+|+++.++..+|.++...|++++|+..++++...+|.....+..+|.++...|++++|+..|+++++.+
T Consensus       188 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  267 (388)
T d1w3ba_         188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ  267 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLER  160 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  160 (244)
                      |+++.++..+|.++...|++++|+..+++++...|.+...+..++.++...|++++|+..|+++++++|+.+..+..++.
T Consensus       268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  347 (388)
T d1w3ba_         268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997766655555


Q ss_pred             HHHHh
Q 039523          161 IVLNL  165 (244)
Q Consensus       161 ~~~~~  165 (244)
                      .....
T Consensus       348 ~~~~~  352 (388)
T d1w3ba_         348 VLQQQ  352 (388)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            54433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.2e-22  Score=152.69  Aligned_cols=154  Identities=12%  Similarity=0.112  Sum_probs=144.4

Q ss_pred             hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCcHHHHH
Q 039523           10 KFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR-DVEKALDVFTRAVQLDPENGEAWN   88 (244)
Q Consensus        10 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~   88 (244)
                      ..+|+..+++..+|.++...+.+++|+..++++++++|++..+|..+|.++...| ++++|+..++++++.+|++..+|.
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3467889999999999999999999999999999999999999999999999987 599999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523           89 IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus        89 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      .+|.++..+|++++|+..+.++++++|++..+|.++|.++...|++++|+.+++++++++|.+...+..+..+..
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999997766665555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.4e-20  Score=122.24  Aligned_cols=112  Identities=24%  Similarity=0.221  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      .-+...|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.++++++|+++.+|+++|.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      +|++++|+..|+++++.+|+++.++..++.+.
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999999988888887764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9e-19  Score=125.45  Aligned_cols=130  Identities=17%  Similarity=0.136  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 039523           19 LRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN   98 (244)
Q Consensus        19 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~   98 (244)
                      ++..|..+...|+|++|+..|.+   ..|.++.+|+++|.++...|++++|++.|+++++++|+++.+|+++|.++..+|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            44679999999999999999986   456688999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCc
Q 039523           99 KSKEAFIAFKEALKLKRNG----------------WQLWENYSHVALDVGNIGQALEAVQMVLNITNNK  151 (244)
Q Consensus        99 ~~~~A~~~~~~a~~~~p~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  151 (244)
                      ++++|+..|++++...+.+                ..+++++|.++...|++++|.+.+.+++++.|+.
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999999865432                4788999999999999999999999999998874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.7e-19  Score=124.50  Aligned_cols=115  Identities=21%  Similarity=0.176  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      +..+...|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..+|..+|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD  130 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  130 (244)
                      .+|++++|+..+++++.++|+++.++..++.+...
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998888777543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.1e-19  Score=116.52  Aligned_cols=110  Identities=17%  Similarity=0.156  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG  132 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~  132 (244)
                      +...|..++..|++++|+.+|.++++.+|+++.+|.++|.++..+|++++|+..+.+++.++|+++.+|+++|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          133 NIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       133 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      ++++|+..|+++++++|+++.....+..+.
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999877666665543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.7e-19  Score=129.04  Aligned_cols=115  Identities=20%  Similarity=0.182  Sum_probs=102.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      ++..+...|..++..|+|++|+..|++++..+|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+++|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039523           95 MIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVAL  129 (244)
Q Consensus        95 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  129 (244)
                      ..+|++++|+..|++++.++|++...+...+....
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l  117 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            99999999999999999988865443333333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.9e-18  Score=117.23  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                      .+...|..+++.|+|++|+.+|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+++.+|..+|.++..+
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            35567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 039523          132 GNIGQALEAVQMVLNITNNKRIDTELLERIV  162 (244)
Q Consensus       132 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  162 (244)
                      |++++|+.++++++.++|++......+....
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999999999999776655555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1e-17  Score=125.17  Aligned_cols=128  Identities=15%  Similarity=0.041  Sum_probs=116.1

Q ss_pred             CCHHHHHHHHHHHHhhCC----CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 039523           30 GEYETSKILREAAMALNS----LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFI  105 (244)
Q Consensus        30 ~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~  105 (244)
                      .+.+.|+..+.+++...+    ..+.+++.+|.+|...|++++|+..|++++.++|+++.+|..+|.++..+|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            456678888888887543    3456899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHH
Q 039523          106 AFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTEL  157 (244)
Q Consensus       106 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  157 (244)
                      .|+++++++|+++.++.++|.++..+|++++|+..++++++.+|++......
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  144 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW  144 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHH
Confidence            9999999999999999999999999999999999999999999986654333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.3e-17  Score=114.95  Aligned_cols=122  Identities=14%  Similarity=0.157  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---------------hHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYP---------------DGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      +..+...|..++..|+|++|+..|++++...|...               .++.++|.++++.|++++|+..+++++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            56677899999999999999999999999877542               356789999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQA  137 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A  137 (244)
                      |+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+.....
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988777665544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=7.7e-18  Score=121.24  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=98.8

Q ss_pred             ChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           49 YPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      +...+...|..++..|+|++|+..|.+++.++|+++.+|.++|.++...|++++|+..|.++++++|+++.+|+++|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            55667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhcCC
Q 039523          129 LDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~~p~  150 (244)
                      ..+|++++|+..|++++.++|+
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999886

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.9e-17  Score=127.53  Aligned_cols=158  Identities=10%  Similarity=-0.037  Sum_probs=136.5

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChhHHH-HHHHHHHHccCHHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGE--YETSKILREAAMALNSLYPDGWF-ALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      |+.+++++++.+|+++.+|..+|.++...++  +++|+..+.+++..+|.+..++. ..|.++...|.+++|+..+++++
T Consensus        92 al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i  171 (334)
T d1dcea1          92 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI  171 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHH
Confidence            4678999999999999999999999888764  89999999999999999988864 67788989999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHcCCh---------------------------------------------------------
Q 039523           78 QLDPENGEAWNIIACLHMIKNKS---------------------------------------------------------  100 (244)
Q Consensus        78 ~~~p~~~~~~~~l~~~~~~~~~~---------------------------------------------------------  100 (244)
                      ..+|.+..+|..+|.++...|++                                                         
T Consensus       172 ~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~  251 (334)
T d1dcea1         172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEK  251 (334)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            99999999999999988876654                                                         


Q ss_pred             -------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHH
Q 039523          101 -------KEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELL  158 (244)
Q Consensus       101 -------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  158 (244)
                             .+|+..+.+++..+|++..++..+|.++...|++++|+.+|+++++++|+....+..+
T Consensus       252 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         252 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence                   4555555666666777788999999999999999999999999999999865544444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-16  Score=114.58  Aligned_cols=107  Identities=13%  Similarity=-0.003  Sum_probs=99.4

Q ss_pred             hccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc-------
Q 039523           11 FQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN-------   83 (244)
Q Consensus        11 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------   83 (244)
                      +.|.++.+|+++|.++..+|++++|+..|+++++++|+++.+|+++|.++.+.|++++|+..|++++...|.+       
T Consensus        31 i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          31 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            3667899999999999999999999999999999999999999999999999999999999999999865533       


Q ss_pred             ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 039523           84 ---------GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNG  117 (244)
Q Consensus        84 ---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  117 (244)
                               ..+++++|.++...|++++|...+.+++.+.|+.
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                     4678999999999999999999999999998874

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.73  E-value=4.5e-17  Score=106.13  Aligned_cols=93  Identities=23%  Similarity=0.256  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523           53 WFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG  132 (244)
Q Consensus        53 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~  132 (244)
                      ++.+|.++.+.|++++|+..+++++..+|+++.+|..+|.++...|++++|+.+++++++++|++..+|..+|.++...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHH
Q 039523          133 NIGQALEAVQMVL  145 (244)
Q Consensus       133 ~~~~A~~~~~~al  145 (244)
                      ++++|++++++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            5555555555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.73  E-value=4.4e-17  Score=106.18  Aligned_cols=95  Identities=16%  Similarity=0.168  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      ..++.+|..++..|++++|+..+++++..+|+++.+|..+|.++.+.|++++|+.+++++++++|+++.+|+.+|.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHH
Q 039523           97 KNKSKEAFIAFKEAL  111 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~  111 (244)
                      .|++++|++.+++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.72  E-value=1.9e-16  Score=108.97  Aligned_cols=130  Identities=11%  Similarity=0.019  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHM   95 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   95 (244)
                      +..+...|..++..|+|.+|+..|.+++...+.........             .......+     ...++.++|.++.
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~-------------~~~~~~~~-----~~~~~~Nla~~~~   78 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI-------------LLDKKKNI-----EISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH-------------HHHHHHHH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHH-------------HHHhhhhH-----HHHHHhhHHHHHH
Confidence            45677889999999999999999999998765432110000             00000000     1124455666666


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVL  163 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  163 (244)
                      ++|++++|+..+.+++.++|++..+|+.+|.++..+|++++|+.+|+++++++|++......+..+..
T Consensus        79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666655544444444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.71  E-value=5e-16  Score=108.62  Aligned_cols=132  Identities=13%  Similarity=0.134  Sum_probs=111.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------hhHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLY---------------PDGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      .+..+...|..++..|+|.+|+..|++++...+..               ..++.++|.|+...|++++|+..+++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            36778899999999999999999999999865432               235678999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQ-ALEAVQMVLN  146 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~  146 (244)
                      +|++..+++.+|.++..+|++++|+..|.+++.++|++..+...++.+....+...+ ....|.+.++
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999888877665543 3444444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1.6e-16  Score=111.26  Aligned_cols=127  Identities=12%  Similarity=0.069  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      ..+...|..++..|+|.+|+..|.+++...+..                  .+..........+|....++.++|.++.+
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHh
Confidence            446678999999999999999999998643210                  11111122233344445555555555555


Q ss_pred             cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 039523           97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERI  161 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  161 (244)
                      +|++++|+..+.++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555544444443333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.2e-17  Score=107.13  Aligned_cols=108  Identities=10%  Similarity=0.041  Sum_probs=65.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHH
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKAR---DVEKALDVFTRAVQLDPEN--GEAWNIIACLHM   95 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~   95 (244)
                      .++..+...+++++|.+.|++++..+|+++.+++++|.++.+.+   ++++|+..+++++..+|.+  ..+++++|.++.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            34555556666666666666666666666666666666665433   3445666666666665543  335666666666


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           96 IKNKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        96 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      ..|++++|+.+|+++++++|++..+....+.+.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            666666666666666666666666655555444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3e-16  Score=104.67  Aligned_cols=106  Identities=16%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 039523           18 ELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIK   97 (244)
Q Consensus        18 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   97 (244)
                      .+..+|..++..|+|++|+.+|+++++.+|+++.++.++|.++...|++++|++.+++++.++|.++..+..+|.     
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~-----   80 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK-----   80 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH-----
Confidence            344566666666666666666666666666666666666666666666666666666666665554433322222     


Q ss_pred             CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           98 NKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        98 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                                            ++..+|.++...+++++|+.+|++++..+|+
T Consensus        81 ----------------------~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          81 ----------------------AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             ----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             ----------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence                                  2334555555555666666666666555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2e-17  Score=128.45  Aligned_cols=150  Identities=8%  Similarity=0.023  Sum_probs=133.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccC--HHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNR----------GEYETSKILREAAMALNSLYPDGWFALGAAALKARD--VEK   68 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~   68 (244)
                      |+.+++++++.+|++..+|...+.++...          |++++|+.+++++++.+|++..+|..+|.++...++  +++
T Consensus        48 al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~  127 (334)
T d1dcea1          48 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR  127 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHH
Confidence            56789999999999999998877776544          448999999999999999999999999999888775  899


Q ss_pred             HHHHHHHHHhcCCCcHHHHH-HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 039523           69 ALDVFTRAVQLDPENGEAWN-IIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNI  147 (244)
Q Consensus        69 A~~~~~~a~~~~p~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  147 (244)
                      |+..+.+++..+|.+..++. ..|.++...+.+++|+..+++++..+|++..+|.++|.++...|++++|...+.+++++
T Consensus       128 a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~  207 (334)
T d1dcea1         128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV  207 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH
T ss_pred             HHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence            99999999999999988864 67889999999999999999999999999999999999999999998887777776666


Q ss_pred             cCC
Q 039523          148 TNN  150 (244)
Q Consensus       148 ~p~  150 (244)
                      .|.
T Consensus       208 ~~~  210 (334)
T d1dcea1         208 LLK  210 (334)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.2e-17  Score=106.18  Aligned_cols=113  Identities=12%  Similarity=0.019  Sum_probs=99.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q 039523           54 FALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKN---KSKEAFIAFKEALKLKRNG--WQLWENYSHVA  128 (244)
Q Consensus        54 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~  128 (244)
                      ..++..+...+++++|.+.|++++..+|+++.+++++|.++.+.+   ++++|+..+++++..+|++  ..+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            357778889999999999999999999999999999999998754   4567999999999988765  45899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          129 LDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       129 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      ...|++++|+.+|+++++++|++..+......+...+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999998877777666655443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.7e-16  Score=107.81  Aligned_cols=117  Identities=17%  Similarity=0.095  Sum_probs=103.9

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---------------GEAWNIIACLHMIKNKSKEAFIAFKEALKLK  114 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  114 (244)
                      +..+...|..++..|++++|+..|.+++...|..               ..++.++|.|+.++|++++|+..+++++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            3456678999999999999999999999987754               2467889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      |+++.+++.+|.++..+|++++|+..|+++++++|+++.....+..+...+.
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998777766666655444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.68  E-value=1.6e-15  Score=104.24  Aligned_cols=81  Identities=20%  Similarity=0.202  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD  130 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  130 (244)
                      .++.++|.++++.|++++|++.+.+++.++|++..+|+.+|.++..+|++++|+..|+++++++|++..+...++.+...
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999998887765


Q ss_pred             c
Q 039523          131 V  131 (244)
Q Consensus       131 ~  131 (244)
                      +
T Consensus       148 l  148 (153)
T d2fbna1         148 L  148 (153)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=1.5e-16  Score=108.39  Aligned_cols=107  Identities=18%  Similarity=0.105  Sum_probs=87.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHc----------cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 039523           25 SAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKA----------RDVEKALDVFTRAVQLDPENGEAWNIIACLH   94 (244)
Q Consensus        25 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   94 (244)
                      .+.+.+.|++|+..|+++++.+|+++.++..+|.++...          +.+++|+..|+++++++|+++.+|+++|.++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            355677799999999999999999999999999998754          4457888888899989998888888888888


Q ss_pred             HHcCC-----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 039523           95 MIKNK-----------SKEAFIAFKEALKLKRNGWQLWENYSHVALDV  131 (244)
Q Consensus        95 ~~~~~-----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  131 (244)
                      ..+|+           +++|..+|++++.++|++...+..++.+....
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            77653           57888888888888888888777777765443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=8.7e-15  Score=112.16  Aligned_cols=151  Identities=13%  Similarity=0.067  Sum_probs=139.2

Q ss_pred             chHHHHHHhh-ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 039523            2 MPAMKKLWKF-QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP-DGWFALGAAALKARDVEKALDVFTRAVQL   79 (244)
Q Consensus         2 i~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~   79 (244)
                      ..+|+++++. .|.+...|...+......|+++.|...|++++...|.+. .+|..++....+.|++++|...|.++++.
T Consensus        84 ~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~  163 (308)
T d2onda1          84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            4688999975 789999999999999999999999999999999999775 47899999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           80 DPENGEAWNIIACLHMI-KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      .|.+...+...+..... .|+.+.|...|++++...|+++..|..++..+...|+++.|+..|+++++..|..+
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            99999999999887554 68999999999999999999999999999999999999999999999999877543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=5.1e-15  Score=103.48  Aligned_cols=94  Identities=19%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             hhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 039523           44 ALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWEN  123 (244)
Q Consensus        44 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  123 (244)
                      ..+|....++.++|.++.+.|++++|+..+.++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            44566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHH
Q 039523          124 YSHVALDVGNIGQA  137 (244)
Q Consensus       124 la~~~~~~~~~~~A  137 (244)
                      ++.+........++
T Consensus       151 l~~~~~~l~~~~~~  164 (169)
T d1ihga1         151 LLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888776555544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=3.8e-15  Score=113.21  Aligned_cols=150  Identities=15%  Similarity=0.055  Sum_probs=83.6

Q ss_pred             CchHHHHHHhhc------cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHH-ccCHH
Q 039523            1 MMPAMKKLWKFQ------MISQLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALK-ARDVE   67 (244)
Q Consensus         1 Ai~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~-~g~~~   67 (244)
                      |+.+|++++++.      ++....+..+|.+|...|++++|+..+++++.+.+..      ..++..+|.++.. .|+++
T Consensus        56 A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  135 (290)
T d1qqea_          56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA  135 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHH
Confidence            345566665552      2234456666666666666666666666666554333      3345555655543 46666


Q ss_pred             HHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCH
Q 039523           68 KALDVFTRAVQLDPE------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGW-------QLWENYSHVALDVGNI  134 (244)
Q Consensus        68 ~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~la~~~~~~~~~  134 (244)
                      +|+++|.+++.+.+.      ...++.++|.++..+|+|++|+..|++++...+...       ..+...+.++...|++
T Consensus       136 ~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  215 (290)
T d1qqea_         136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA  215 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH
Confidence            666666666554321      123455666666666666666666666666555432       3345556666666666


Q ss_pred             HHHHHHHHHHHhhcCC
Q 039523          135 GQALEAVQMVLNITNN  150 (244)
Q Consensus       135 ~~A~~~~~~al~~~p~  150 (244)
                      ..|...++++++++|.
T Consensus       216 ~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         216 VAAARTLQEGQSEDPN  231 (290)
T ss_dssp             HHHHHHHHGGGCC---
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            6666666666666654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.63  E-value=1.2e-14  Score=101.51  Aligned_cols=117  Identities=12%  Similarity=0.001  Sum_probs=102.9

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPEN---------------GEAWNIIACLHMIKNKSKEAFIAFKEALKLK  114 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  114 (244)
                      +..+...|..++..|+|.+|+..|.+++...|..               ..++.++|.|+..+|++++|+..+.+++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            3456788999999999999999999999764432               2467889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          115 RNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       115 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      |++..+++.+|.++..+|++++|+..|.+++.++|++......+..+...+.
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998877777666655544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=2.1e-15  Score=102.65  Aligned_cols=107  Identities=11%  Similarity=-0.015  Sum_probs=93.7

Q ss_pred             HHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 039523           59 AALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIK----------NKSKEAFIAFKEALKLKRNGWQLWENYSHVA  128 (244)
Q Consensus        59 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  128 (244)
                      .+.+.+.|++|+..|+++++++|+++.+++++|.++...          +.+++|+..|+++++++|+++.+++++|.++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            356778899999999999999999999999999999854          4558999999999999999999999999999


Q ss_pred             HHcCC-----------HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 039523          129 LDVGN-----------IGQALEAVQMVLNITNNKRIDTELLERIVLNL  165 (244)
Q Consensus       129 ~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  165 (244)
                      ..+|+           +++|..+|+++++++|++......+.......
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            88764           78999999999999999887777776655443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.3e-13  Score=104.08  Aligned_cols=161  Identities=10%  Similarity=-0.039  Sum_probs=140.0

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHccCHH
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNR--------------GEYETSKILREAAMAL-NSLYPDGWFALGAAALKARDVE   67 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~   67 (244)
                      .+|++|+...|.++.+|...+......              +..++|...|++++.. .|.+...|..++......|+++
T Consensus        37 ~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~  116 (308)
T d2onda1          37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE  116 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHH
Confidence            479999999999999999888765443              3468899999999975 7888899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 039523           68 KALDVFTRAVQLDPENG-EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVAL-DVGNIGQALEAVQMVL  145 (244)
Q Consensus        68 ~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al  145 (244)
                      +|...|++++...|.+. .+|..++......|+++.|...|+++++..|.+...+...+.... ..|+.+.|..+|++++
T Consensus       117 ~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l  196 (308)
T d2onda1         117 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL  196 (308)
T ss_dssp             HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            99999999999999765 478999999999999999999999999999999999999988754 4689999999999999


Q ss_pred             hhcCCchhhHHHHHHHHH
Q 039523          146 NITNNKRIDTELLERIVL  163 (244)
Q Consensus       146 ~~~p~~~~~~~~l~~~~~  163 (244)
                      +..|+++..+..+..+..
T Consensus       197 ~~~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         197 KKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHH
Confidence            999997655555544443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.1e-15  Score=98.59  Aligned_cols=100  Identities=20%  Similarity=0.198  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD  130 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  130 (244)
                      ..+..+|..++..|+|++|+.+|.+++.++|+++.++.++|.++..+|++++|+..++++++++|++...+..+|.++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhcCC
Q 039523          131 VGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus       131 ~~~~~~A~~~~~~al~~~p~  150 (244)
                      +|+...+...++++++..+.
T Consensus        85 lg~~~~~~~~~~~A~~~~~k  104 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNK  104 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHH
Confidence            99999999999999987654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-14  Score=118.16  Aligned_cols=140  Identities=9%  Similarity=-0.016  Sum_probs=94.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 039523           25 SAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAF  104 (244)
Q Consensus        25 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~  104 (244)
                      .....+.|+.|+..+.+++..+|++...+..+|..+...|++++|...+.+++..+|  ..++..+|.++...|++++|+
T Consensus        95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~  172 (497)
T d1ya0a1          95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAE  172 (497)
T ss_dssp             HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHH
Confidence            333455667777777777778899999999999999999999999999999988765  468889999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 039523          105 IAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLERIVLNLE  166 (244)
Q Consensus       105 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  166 (244)
                      .+|.+++.++|+++.+++++|.++...|++.+|+.+|.+++...|..+.+...+..+.....
T Consensus       173 ~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999998877777777665544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=9.5e-14  Score=105.35  Aligned_cols=137  Identities=9%  Similarity=-0.058  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc------
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNS------LYPDGWFALGAAALKARDVEKALDVFTRAVQLDPEN------   83 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------   83 (244)
                      .+.|...|.+|...|+|++|+..|.+++.+.+      +...++..+|.+|...|++++|++++++++.+.+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            45688999999999999999999999998732      234678999999999999999999999999876544      


Q ss_pred             HHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCch
Q 039523           84 GEAWNIIACLHMI-KNKSKEAFIAFKEALKLKRN------GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKR  152 (244)
Q Consensus        84 ~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  152 (244)
                      ..++..+|.++.. .|++++|+.+|++++.+.+.      ...++.++|.++..+|++++|+..|++++...|...
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            4678888888865 69999999999999887432      255688999999999999999999999999987743

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.6e-14  Score=116.49  Aligned_cols=128  Identities=13%  Similarity=0.115  Sum_probs=88.8

Q ss_pred             hHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 039523            3 PAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPE   82 (244)
Q Consensus         3 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   82 (244)
                      ..|++++.++|++...+..+|..+...|+++.|+..+.+++..+|  ..++..+|.++...|++++|+.+|.+++.++|+
T Consensus       107 ~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~  184 (497)
T d1ya0a1         107 QELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS  184 (497)
T ss_dssp             HHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            344455567899999999999999999999999999999998876  467889999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 039523           83 NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVG  132 (244)
Q Consensus        83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~  132 (244)
                      ++..++++|.++...|++.+|+.+|.+++...|..+.++.+++.++....
T Consensus       185 ~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999887544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.7e-13  Score=85.03  Aligned_cols=79  Identities=22%  Similarity=0.229  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHH
Q 039523           16 QLELRSLARSAYNRGEYETSKILREAAMALNSLY-------PDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWN   88 (244)
Q Consensus        16 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~   88 (244)
                      ++-.+.+|.+++..|+|++|+.+|+++++..|.+       ..++.++|.++.+.|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4556677777777777777777777777664432       345666666666666666666666666666666666666


Q ss_pred             HHHHHH
Q 039523           89 IIACLH   94 (244)
Q Consensus        89 ~l~~~~   94 (244)
                      +++.+.
T Consensus        85 Nl~~~~   90 (95)
T d1tjca_          85 NLKYFE   90 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.46  E-value=1.2e-13  Score=95.14  Aligned_cols=110  Identities=14%  Similarity=0.033  Sum_probs=68.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKE  102 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  102 (244)
                      |..++..|+|++|+..|++++.+.|+.+......                      ..+....+|.++|.++..+|++++
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~----------------------~~~~~a~~~~nlg~~~~~lg~~~~   73 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD----------------------HAGFDAFCHAGLAEALAGLRSFDE   73 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC----------------------HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcc----------------------cchhHHHHHHHHHHHHHHcCccch
Confidence            5556666666666666666666655443210000                      000012456667777777777777


Q ss_pred             HHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhh
Q 039523          103 AFIAFKEALKLKRN-----------GWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRID  154 (244)
Q Consensus       103 A~~~~~~a~~~~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  154 (244)
                      |+..+++++.+.|.           ...+++++|.++..+|++++|+..|++++++.|+....
T Consensus        74 A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          74 ALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             HHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence            77777777665331           23467888999999999999999999998887764333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.43  E-value=3.5e-13  Score=92.69  Aligned_cols=65  Identities=18%  Similarity=0.039  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 039523           51 DGWFALGAAALKARDVEKALDVFTRAVQLDPE-----------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKR  115 (244)
Q Consensus        51 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  115 (244)
                      .++.++|.++...|++++|+..+++++++.|.           ...+++++|.++..+|++++|+..|++++++.|
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34555566666666666666666655544321           123566777777777777777777777777644

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.7e-13  Score=83.21  Aligned_cols=81  Identities=15%  Similarity=0.096  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 039523           50 PDGWFALGAAALKARDVEKALDVFTRAVQLDPE-------NGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWE  122 (244)
Q Consensus        50 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  122 (244)
                      +.-++.+|.++.+.|+|++|+.+|++++++.|.       ...++.++|.++.+.|++++|+.+++++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            455677888888888888888888888876543       2567788888888888888888888888888888888888


Q ss_pred             HHHHHHHH
Q 039523          123 NYSHVALD  130 (244)
Q Consensus       123 ~la~~~~~  130 (244)
                      +++.+...
T Consensus        85 Nl~~~~~~   92 (95)
T d1tjca_          85 NLKYFEYI   92 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77765543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.41  E-value=3.1e-13  Score=100.66  Aligned_cols=131  Identities=12%  Similarity=0.005  Sum_probs=113.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 039523           23 ARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKE  102 (244)
Q Consensus        23 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  102 (244)
                      +...+..|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999887777666


Q ss_pred             HHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchh
Q 039523          103 AFIAFKEALK-LKRNGWQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRI  153 (244)
Q Consensus       103 A~~~~~~a~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  153 (244)
                      +.....+... ..|.....+...+.++...|++++|...+.++.+..|+.+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            6554433222 24555677778899999999999999999999999998543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.5e-11  Score=93.15  Aligned_cols=139  Identities=11%  Similarity=0.017  Sum_probs=108.6

Q ss_pred             ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----hHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCc---
Q 039523           12 QMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYP-----DGWFALGAAALKARDVEKALDVFTRAVQLDPEN---   83 (244)
Q Consensus        12 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---   83 (244)
                      ++..+++....|.++...|++++|+..+++++...|++.     .++..+|.++...|++++|+..+++++...+..   
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence            445567777888888899999999999999988888763     467788888999999999999998888764422   


Q ss_pred             ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 039523           84 ---GEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN--------GWQLWENYSHVALDVGNIGQALEAVQMVLNITNN  150 (244)
Q Consensus        84 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  150 (244)
                         ...+..++.++...|++..|...+.+++...+.        ....+..+|.++...|+++.+...+.+++...+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence               345677888888889999888888888765321        2345677888888889998888888888877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=5.6e-10  Score=85.42  Aligned_cols=150  Identities=14%  Similarity=0.026  Sum_probs=126.8

Q ss_pred             CchHHHHHHhhccCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHccCHHHH
Q 039523            1 MMPAMKKLWKFQMIS-----QLELRSLARSAYNRGEYETSKILREAAMALNSLY------PDGWFALGAAALKARDVEKA   69 (244)
Q Consensus         1 Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A   69 (244)
                      |+++|+++++..|++     ..++..+|.++...|++++|+..+++++...+..      ..++..++.++...|++..|
T Consensus        31 A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  110 (366)
T d1hz4a_          31 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA  110 (366)
T ss_dssp             HHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999998876     3578889999999999999999999999875433      34678899999999999999


Q ss_pred             HHHHHHHHhcCC--------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHH
Q 039523           70 LDVFTRAVQLDP--------ENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRN-----GWQLWENYSHVALDVGNIGQ  136 (244)
Q Consensus        70 ~~~~~~a~~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~la~~~~~~~~~~~  136 (244)
                      ...+.+++...+        .....+..+|.++...|+++.+...+.+++...+.     ....+...+.++...+++..
T Consensus       111 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (366)
T d1hz4a_         111 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN  190 (366)
T ss_dssp             HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHH
Confidence            999999887532        22346778899999999999999999999987654     35677888999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 039523          137 ALEAVQMVLNITNN  150 (244)
Q Consensus       137 A~~~~~~al~~~p~  150 (244)
                      +...+.++....+.
T Consensus       191 a~~~~~~a~~~~~~  204 (366)
T d1hz4a_         191 ARSQLNRLENLLGN  204 (366)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=4e-11  Score=83.85  Aligned_cols=121  Identities=12%  Similarity=-0.058  Sum_probs=97.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL   93 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   93 (244)
                      +..+.+...|......|++++|+..|.+++.+.+.........       +.+-     ......+.+....++..++.+
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w~-----~~~r~~l~~~~~~a~~~la~~   76 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQFV-----EPFATALVEDKVLAHTAKAEA   76 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STTH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            3467788999999999999999999999999988664322111       1111     111222334456788999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           94 HMIKNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        94 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      +...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++.+
T Consensus        77 ~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          77 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999844

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.21  E-value=1.1e-11  Score=92.18  Aligned_cols=122  Identities=12%  Similarity=-0.028  Sum_probs=105.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHh-c
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQ-L   79 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~   79 (244)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..++.++...+..+++...+.+... .
T Consensus        15 Al~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~   94 (264)
T d1zbpa1          15 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLG   94 (264)
T ss_dssp             HHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhccc
Confidence            578999999999999999999999999999999999999999999999999999999998888777776655444332 3


Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 039523           80 DPENGEAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWE  122 (244)
Q Consensus        80 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  122 (244)
                      .|.....+...+.++...|++++|...++++.+..|+.+..+.
T Consensus        95 ~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          95 ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            4556677788899999999999999999999999998765543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.10  E-value=7.6e-09  Score=76.57  Aligned_cols=45  Identities=16%  Similarity=0.109  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 039523          101 KEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNI  147 (244)
Q Consensus       101 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~  147 (244)
                      ..+..+++.+.+  +.++.+++++|.++..    ..++++|+.+|+++.+.
T Consensus       163 ~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~  211 (265)
T d1ouva_         163 KKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  211 (265)
T ss_dssp             HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             ccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence            344444444332  3456677777777766    55777777777777665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=6e-09  Score=72.55  Aligned_cols=99  Identities=10%  Similarity=0.041  Sum_probs=74.6

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLD   80 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~   80 (244)
                      |+..|.+|+.+.++.......       .+.+     .......+.+....++..++.++...|++++|+.++++++..+
T Consensus        30 A~~~~~~AL~l~rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~   97 (179)
T d2ff4a2          30 ASRHLSAALREWRGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH   97 (179)
T ss_dssp             HHHHHHHHHTTCCSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhCcccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC
Confidence            356777787776655321110       1111     1122233344456788999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039523           81 PENGEAWNIIACLHMIKNKSKEAFIAFKEAL  111 (244)
Q Consensus        81 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  111 (244)
                      |.+..+|..++.++...|++.+|+..|+++.
T Consensus        98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          98 PYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999873

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1.8e-07  Score=59.70  Aligned_cols=78  Identities=9%  Similarity=-0.008  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCchhhHHHHH
Q 039523           84 GEAWNIIACLHMIKNK---SKEAFIAFKEALKLKRNG-WQLWENYSHVALDVGNIGQALEAVQMVLNITNNKRIDTELLE  159 (244)
Q Consensus        84 ~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  159 (244)
                      ....+++|.++.+..+   .++++..++.+++.+|.+ ..+++++|..|.++|+|++|..+++++++++|++........
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            4455555555554433   345666666666555544 356666666666666666666666666666666554443333


Q ss_pred             HH
Q 039523          160 RI  161 (244)
Q Consensus       160 ~~  161 (244)
                      .+
T Consensus       115 ~I  116 (124)
T d2pqrb1         115 MV  116 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1e-07  Score=60.90  Aligned_cols=80  Identities=14%  Similarity=0.021  Sum_probs=63.7

Q ss_pred             ChhHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 039523           49 YPDGWFALGAAALKAR---DVEKALDVFTRAVQLDPENG-EAWNIIACLHMIKNKSKEAFIAFKEALKLKRNGWQLWENY  124 (244)
Q Consensus        49 ~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  124 (244)
                      .....+.+|.++.+..   +.++|+.+++.+++.+|.+. ++++.+|..+.++|+|++|..+++++++++|++..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            3567788888888764   45688888988888888664 7888999999999999999999999999999888776655


Q ss_pred             HHHH
Q 039523          125 SHVA  128 (244)
Q Consensus       125 a~~~  128 (244)
                      ..+.
T Consensus       114 ~~Ie  117 (124)
T d2pqrb1         114 SMVE  117 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.68  E-value=6.9e-07  Score=58.66  Aligned_cols=111  Identities=16%  Similarity=0.115  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHHHH
Q 039523           30 GEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI----KNKSKEAFI  105 (244)
Q Consensus        30 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~  105 (244)
                      .++++|+.+|+++.+..  ++.+.+.++.  ....+.++|+++++++.+.  .++.+.+.+|.++..    ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            46889999999998764  5566666664  3457889999999998765  578889999998876    566899999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Q 039523          106 AFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNIT  148 (244)
Q Consensus       106 ~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~  148 (244)
                      +|+++.+.  .++.+.+.+|.+|..    ..+.++|..+|+++.+..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            99999875  468889999999887    568999999999998764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.52  E-value=1.5e-06  Score=56.99  Aligned_cols=107  Identities=18%  Similarity=0.158  Sum_probs=88.4

Q ss_pred             CchHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 039523            1 MMPAMKKLWKFQMISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDVFTRA   76 (244)
Q Consensus         1 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a   76 (244)
                      |+.+|+++.+.  .++.+.+.++.  ....+.++|+.+++++.+.  .++.+.+.+|.+|..    ..++.+|+++|+++
T Consensus        12 A~~~~~kaa~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~a   85 (133)
T d1klxa_          12 AIQYYVKACEL--NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA   85 (133)
T ss_dssp             HHHHHHHHHHT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhh
Confidence            56788888876  35666777764  3567899999999999875  578999999999987    56799999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 039523           77 VQLDPENGEAWNIIACLHMI----KNKSKEAFIAFKEALKLKR  115 (244)
Q Consensus        77 ~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p  115 (244)
                      .+.  .++.+.+.+|.++..    ..+..+|+.+|+++.+...
T Consensus        86 a~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          86 CGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            875  478889999999987    5689999999999988753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.33  E-value=1.3e-05  Score=58.53  Aligned_cols=127  Identities=19%  Similarity=0.284  Sum_probs=105.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039523           15 SQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALK----ARDVEKALDVFTRAVQLDPENGEAWNII   90 (244)
Q Consensus        15 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l   90 (244)
                      ||.+++.+|..++..+++++|+.+|+++.+.  .+..+++.||.++..    ..++..|..++..+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            5789999999999999999999999999875  578999999999998    77999999999998764  477888888


Q ss_pred             HHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 039523           91 ACLHMI----KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALD----VGNIGQALEAVQMVLNI  147 (244)
Q Consensus        91 ~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~  147 (244)
                      |.++..    .++.+.|...++.+....+  ......++..+..    ......+...+.+....
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~  139 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  139 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc
Confidence            888765    4678899999999987654  5667777777765    45677888888877664

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.67  Score=35.60  Aligned_cols=22  Identities=5%  Similarity=-0.183  Sum_probs=11.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 039523          125 SHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~al~  146 (244)
                      +..+...|....|...+..+++
T Consensus       388 a~~L~~~g~~~~A~~e~~~l~~  409 (450)
T d1qsaa1         388 VRELMYWNLDNTARSEWANLVK  409 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCchHHHHHHHHHHh
Confidence            4445555555555555554443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=1.3  Score=33.95  Aligned_cols=125  Identities=9%  Similarity=0.021  Sum_probs=88.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHH----HHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039523           21 SLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGA----AALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMI   96 (244)
Q Consensus        21 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~----~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   96 (244)
                      ..+..-....+.+.|...+.......+.+...+.....    .....+..+.+............+.......++. ...
T Consensus       219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~  297 (450)
T d1qsaa1         219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALG  297 (450)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHH
T ss_pred             HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHH
Confidence            44445555678889999888887776666554433333    3334567788888887777666555555555554 456


Q ss_pred             cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039523           97 KNKSKEAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQMVLN  146 (244)
Q Consensus        97 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  146 (244)
                      .+++..+...+..............+.+|..+...|+.+.|...|..+..
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            78999888888765433334577889999999999999999999999875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.94  E-value=1.6  Score=32.02  Aligned_cols=122  Identities=10%  Similarity=0.043  Sum_probs=66.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039523           14 ISQLELRSLARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACL   93 (244)
Q Consensus        14 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   93 (244)
                      ++...|..+........+..-+... ...   ...++.-...+...+...|.+++.+.+++.++...+.+...+..++.+
T Consensus        67 ~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~l  142 (336)
T d1b89a_          67 NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL  142 (336)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHH
Confidence            4566777777777766665443221 000   112334444566666777777777777777777767777777777776


Q ss_pred             HHHcCChHHHHHHHHHH-HhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHH
Q 039523           94 HMIKNKSKEAFIAFKEA-LKLKRN-------GWQLWENYSHVALDVGNIGQALEA  140 (244)
Q Consensus        94 ~~~~~~~~~A~~~~~~a-~~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~  140 (244)
                      +.+.+ .++-.+.++.. ...++.       ....|..+..+|.+.|+++.|+..
T Consensus       143 yak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~  196 (336)
T d1b89a_         143 YSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  196 (336)
T ss_dssp             HHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHH
Confidence            65543 23333333321 111111       112245566667777777766543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.96  E-value=3.7  Score=30.01  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=71.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 039523           22 LARSAYNRGEYETSKILREAAMALNSLYPDGWFALGAAALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSK  101 (244)
Q Consensus        22 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  101 (244)
                      +..++...+++..|.+...+.     ++...|..+...+....+..-+.-+ ...   .-..+.-.......+...|.++
T Consensus        46 l~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e  116 (336)
T d1b89a_          46 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFE  116 (336)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChH
Confidence            345556666666666665544     4566777777777777666543221 111   1134444556667788889999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039523          102 EAFIAFKEALKLKRNGWQLWENYSHVALDVGNIGQALEAVQ  142 (244)
Q Consensus       102 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  142 (244)
                      +.+.+++.++...+.+...+..++.++.+.+ .++-.++++
T Consensus       117 ~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~  156 (336)
T d1b89a_         117 ELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLE  156 (336)
T ss_dssp             HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHH
Confidence            9999999998888888888888888776653 334444443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=84.25  E-value=3.2  Score=25.72  Aligned_cols=54  Identities=13%  Similarity=0.009  Sum_probs=33.8

Q ss_pred             HHHccCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 039523           60 ALKARDVEKALDVFTRAVQLDPENGEAWNIIACLHMIKNKSKEAFIAFKEALKL  113 (244)
Q Consensus        60 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  113 (244)
                      ...+|+-++-.+.+...++-..-+|..+..+|.+|.+.|...++-+.+.+|-+.
T Consensus        96 lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          96 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            345556565556666666655556677777777777777777777777666554

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.86  E-value=1.3  Score=24.78  Aligned_cols=27  Identities=19%  Similarity=0.158  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039523           17 LELRSLARSAYNRGEYETSKILREAAM   43 (244)
Q Consensus        17 ~~~~~la~~~~~~~~~~~A~~~~~~al   43 (244)
                      ..+-..|.-+...|.|++|+++++++.
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344556666777777777777766554

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.40  E-value=1.3  Score=24.73  Aligned_cols=26  Identities=19%  Similarity=0.115  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH
Q 039523           52 GWFALGAAALKARDVEKALDVFTRAV   77 (244)
Q Consensus        52 ~~~~la~~~~~~g~~~~A~~~~~~a~   77 (244)
                      .+...|.-+...|.|++|+++.+++.
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34456666777788888877776543