Citrus Sinensis ID: 039524

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
MGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKIGDF
ccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHccccccccEEEEccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccEEEEcccccccccccccccccccccccccEEEEccccccEEEEEcccccEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccc
cccccccHHcEcccccccccccccccccccEEEccccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEEEEcEccccccccccHHHHEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccEEEEEccccccccccEccccccccccEEEEEEccccccEEEEEccccEEEEEcccccEEEEEEccHHHHHccccEcEEEEEEEEEccccEEEEEEEcccccccEEcccHHHcccccccccccccHHHHHHHHHHccccccHHHHHEEcccc
mglkslpkqfhqpleerfsekkildqvsiplidmsnwespeVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFalpaeekrkyskensptnkvrlgssfVPLVEKALEWKDFLSLfygseeetsafwppvckdetleyMKSSEVLIRRLMHVLVKGlnvkrideirepmllgsrrvnlnyypmcpnpeltvgvgrhsdisTFTILLqddigglhvrkdsgndwihvapisgsliINIGDALQIMSNGRYKSIEHCVIangsqnrisvplfvnpkpeailcpfpevlangekplykpvlcadysrhfytkahdgkktidfakigdf
mglkslpkqfhqpleerfsekkilDQVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFfalpaeekrkyskensptnkvrlgssfVPLVEKALEWKDFLSLFygseeetsafwppvckDETLEYMKSSEVLIRRLMHVLvkglnvkrideirepmlLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYtkahdgkktiDFAKIGDF
MGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKIGDF
**********************ILDQVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFAL*******************LGSSFVPLVEKALEWKDFLSLFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDF******
MGLKSLPKQFHQPLE***********VSIPLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYS**NS*TNKVRLGSSFVPLVEKALEWKDFLSLFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKIGD*
MGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEE*********PTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKIGDF
**LKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKIGDF
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MGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKIGDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query331 2.2.26 [Sep-21-2011]
Q9LHN8361 Feruloyl CoA ortho-hydrox yes no 0.987 0.905 0.628 1e-128
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.984 0.903 0.627 1e-125
Q43383398 1-aminocyclopropane-1-car no no 0.939 0.781 0.353 2e-48
Q9LTH8364 1-aminocyclopropane-1-car no no 0.942 0.857 0.346 1e-47
Q84MB3365 1-aminocyclopropane-1-car no no 0.951 0.863 0.334 2e-46
Q9M2C4370 1-aminocyclopropane-1-car no no 0.939 0.840 0.345 1e-45
Q7XZQ8365 Flavone synthase OS=Petro N/A no 0.797 0.723 0.351 5e-45
Q07353369 Naringenin,2-oxoglutarate N/A no 0.858 0.769 0.326 5e-44
P10967363 1-aminocyclopropane-1-car N/A no 0.960 0.876 0.332 1e-43
Q9LTH7366 1-aminocyclopropane-1-car no no 0.954 0.863 0.313 3e-43
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function desciption
 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 268/328 (81%), Gaps = 1/328 (0%)

Query: 2   GLKSLPKQFHQPLEERFSEKKILD-QVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVN 60
           G+K+LP+Q+ QPLEER   K + +   +IP+IDMSN +   VA+++CDAAE WGFFQ++N
Sbjct: 34  GIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPDEDRVAEAVCDAAEKWGFFQVIN 93

Query: 61  HGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLS 120
           HGVPLEVL+ VK ATH+FF LP EEKRK++KENS +  VR G+SF PL E+ALEWKD+LS
Sbjct: 94  HGVPLEVLDDVKAATHKFFNLPVEEKRKFTKENSLSTTVRFGTSFSPLAEQALEWKDYLS 153

Query: 121 LFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSR 180
           LF+ SE E   FWP +C++ETLEY+  S+ ++RRL+  L K LNVK +DE +E + +GS 
Sbjct: 154 LFFVSEAEAEQFWPDICRNETLEYINKSKKMVRRLLEYLGKNLNVKELDETKESLFMGSI 213

Query: 181 RVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLI 240
           RVNLNYYP+CPNP+LTVGVGRHSD+S+ TILLQD IGGLHVR  +  +W+HV P++GS +
Sbjct: 214 RVNLNYYPICPNPDLTVGVGRHSDVSSLTILLQDQIGGLHVRSLASGNWVHVPPVAGSFV 273

Query: 241 INIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLY 300
           INIGDA+QIMSNG YKS+EH V+ANG  NRISVP+FVNPKPE+++ P PEV+ANGE+P+Y
Sbjct: 274 INIGDAMQIMSNGLYKSVEHRVLANGYNNRISVPIFVNPKPESVIGPLPEVIANGEEPIY 333

Query: 301 KPVLCADYSRHFYTKAHDGKKTIDFAKI 328
           + VL +DY ++F+ KAHDGKKT+D+AKI
Sbjct: 334 RDVLYSDYVKYFFRKAHDGKKTVDYAKI 361
2-oxoglutarate (OG)- and Fe(II)-dependent dioxygenase (2OGD)involved in scopoletin biosynthesis. Converts feruloyl CoA into 6'-hydroxyferuloyl CoA but has no activity with ferulic acid, feruloylquinic acid, caffeic acid, caffeoyl CoA, p-coumaric acid, cinnamic acid, cinnamoyl CoA or benzoyl CoA.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2C4|ACCH8_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 8 OS=Arabidopsis thaliana GN=At3g61400 PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ8|FNSI_PETCR Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1 Back     alignment and function description
>sp|Q07353|FL3H_PETHY Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1 Back     alignment and function description
>sp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
354696022363 citrus dioxygenase [Citrus limetta] 1.0 0.911 0.945 0.0
224057036358 predicted protein [Populus trichocarpa] 0.987 0.913 0.707 1e-138
224052970361 2-oxoglutarate-dependent dioxygenase [Po 0.987 0.905 0.676 1e-135
225435724358 PREDICTED: 1-aminocyclopropane-1-carboxy 0.987 0.913 0.679 1e-132
225435722358 PREDICTED: 1-aminocyclopropane-1-carboxy 0.987 0.913 0.676 1e-130
358635024358 oxidoreductase [Ipomoea batatas] 0.990 0.916 0.653 1e-129
358635028358 oxidoreductase [Ipomoea batatas] 0.990 0.916 0.652 1e-129
255569732363 leucoanthocyanidin dioxygenase, putative 0.981 0.895 0.660 1e-129
388499148361 unknown [Lotus japonicus] 0.990 0.908 0.655 1e-129
358635026358 oxidoreductase [Ipomoea batatas] 0.990 0.916 0.646 1e-128
>gi|354696022|gb|AER36089.1| citrus dioxygenase [Citrus limetta] Back     alignment and taxonomy information
 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/331 (94%), Positives = 317/331 (95%)

Query: 1   MGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVN 60
           MGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMS WESPEVAKSICD AENWGFFQIVN
Sbjct: 33  MGLKSLPKQFHQPLEERFSEKKILDQVSIPLIDMSKWESPEVAKSICDTAENWGFFQIVN 92

Query: 61  HGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLS 120
           HGVPLEVLERVKEATHRFFALPAEEKRKYSKENSP N VR GSSFVP VE+ALEWKDFLS
Sbjct: 93  HGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPINNVRYGSSFVPHVERALEWKDFLS 152

Query: 121 LFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSR 180
           LFY SEEETSAFWPPVCKDE LEYM+SSEV I+RLMHVLVK LNVKRIDEIREPMLLGSR
Sbjct: 153 LFYVSEEETSAFWPPVCKDEMLEYMRSSEVFIKRLMHVLVKVLNVKRIDEIREPMLLGSR 212

Query: 181 RVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLI 240
           RVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKD+G DWIH APISGSLI
Sbjct: 213 RVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDNGTDWIHAAPISGSLI 272

Query: 241 INIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLY 300
           INIGDALQIMSNGR KSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLY
Sbjct: 273 INIGDALQIMSNGRNKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLY 332

Query: 301 KPVLCADYSRHFYTKAHDGKKTIDFAKIGDF 331
           KPVL ADYSRHFYTKAHDGKKTIDFAKIGDF
Sbjct: 333 KPVLYADYSRHFYTKAHDGKKTIDFAKIGDF 363

Source: Citrus limetta

Species: Citrus limetta

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224057036|ref|XP_002299115.1| predicted protein [Populus trichocarpa] gi|222846373|gb|EEE83920.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224052970|ref|XP_002297642.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222844900|gb|EEE82447.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435724|ref|XP_002285698.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225435722|ref|XP_002285699.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|358635024|dbj|BAL22345.1| oxidoreductase [Ipomoea batatas] Back     alignment and taxonomy information
>gi|358635028|dbj|BAL22347.1| oxidoreductase [Ipomoea batatas] Back     alignment and taxonomy information
>gi|255569732|ref|XP_002525830.1| leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223534835|gb|EEF36524.1| leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388499148|gb|AFK37640.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|358635026|dbj|BAL22346.1| oxidoreductase [Ipomoea batatas] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
TAIR|locus:2086789361 AT3G13610 [Arabidopsis thalian 0.987 0.905 0.628 1.1e-117
TAIR|locus:2035671361 AT1G55290 [Arabidopsis thalian 0.984 0.903 0.627 1.7e-114
TAIR|locus:2090359357 AT3G12900 [Arabidopsis thalian 0.978 0.907 0.474 1.5e-81
TAIR|locus:505006595360 AT5G12270 [Arabidopsis thalian 0.981 0.902 0.441 6.2e-78
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.960 0.900 0.356 3.1e-51
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.942 0.857 0.346 1.8e-48
TAIR|locus:2020798398 2A6 [Arabidopsis thaliana (tax 0.924 0.768 0.372 4.7e-48
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.888 0.807 0.350 1.6e-47
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.954 0.908 0.342 4.2e-47
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.924 0.876 0.331 6.2e-46
TAIR|locus:2086789 AT3G13610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 206/328 (62%), Positives = 268/328 (81%)

Query:     2 GLKSLPKQFHQPLEERFSEKKILD-QVSIPLIDMSNWESPEVAKSICDAAENWGFFQIVN 60
             G+K+LP+Q+ QPLEER   K + +   +IP+IDMSN +   VA+++CDAAE WGFFQ++N
Sbjct:    34 GIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPDEDRVAEAVCDAAEKWGFFQVIN 93

Query:    61 HGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLS 120
             HGVPLEVL+ VK ATH+FF LP EEKRK++KENS +  VR G+SF PL E+ALEWKD+LS
Sbjct:    94 HGVPLEVLDDVKAATHKFFNLPVEEKRKFTKENSLSTTVRFGTSFSPLAEQALEWKDYLS 153

Query:   121 LFYGSEEETSAFWPPVCKDETLEYMKSSEVLIRRLMHVLVKGLNVKRIDEIREPMLLGSR 180
             LF+ SE E   FWP +C++ETLEY+  S+ ++RRL+  L K LNVK +DE +E + +GS 
Sbjct:   154 LFFVSEAEAEQFWPDICRNETLEYINKSKKMVRRLLEYLGKNLNVKELDETKESLFMGSI 213

Query:   181 RVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRKDSGNDWIHVAPISGSLI 240
             RVNLNYYP+CPNP+LTVGVGRHSD+S+ TILLQD IGGLHVR  +  +W+HV P++GS +
Sbjct:   214 RVNLNYYPICPNPDLTVGVGRHSDVSSLTILLQDQIGGLHVRSLASGNWVHVPPVAGSFV 273

Query:   241 INIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLY 300
             INIGDA+QIMSNG YKS+EH V+ANG  NRISVP+FVNPKPE+++ P PEV+ANGE+P+Y
Sbjct:   274 INIGDAMQIMSNGLYKSVEHRVLANGYNNRISVPIFVNPKPESVIGPLPEVIANGEEPIY 333

Query:   301 KPVLCADYSRHFYTKAHDGKKTIDFAKI 328
             + VL +DY ++F+ KAHDGKKT+D+AKI
Sbjct:   334 RDVLYSDYVKYFFRKAHDGKKTVDYAKI 361
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0019748 "secondary metabolic process" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0010421 "hydrogen peroxide-mediated programmed cell death" evidence=IMP
GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP
GO:0051213 "dioxygenase activity" evidence=IDA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
TAIR|locus:2035671 AT1G55290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090359 AT3G12900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006595 AT5G12270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020798 2A6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LHN8F6H1_ARATH1, ., 1, 4, ., 1, 1, ., -0.62800.98790.9058yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.9LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-73
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 6e-73
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-66
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 4e-65
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-59
PLN02947374 PLN02947, PLN02947, oxidoreductase 5e-59
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 8e-58
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-53
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-52
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 4e-52
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-51
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-50
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-50
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 9e-47
PLN02904357 PLN02904, PLN02904, oxidoreductase 5e-45
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 7e-39
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-37
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-37
PLN02997325 PLN02997, PLN02997, flavonol synthase 5e-36
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 6e-35
PLN02485329 PLN02485, PLN02485, oxidoreductase 4e-32
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 9e-32
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 6e-30
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 6e-30
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-29
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-29
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 6e-29
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 5e-09
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information 
 Score =  230 bits (589), Expect = 1e-73
 Identities = 119/349 (34%), Positives = 183/349 (52%), Gaps = 27/349 (7%)

Query: 2   GLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSNWESP-EVAKSIC-----DA 49
           G+ S+PK++ +P EER      F E+K      +P++D+SN ES  EV +  C      A
Sbjct: 15  GVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAA 74

Query: 50  AENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLV 109
           A  WG   +V HG+P ++L+RV++A   FF LP EEK KY+ + +       GS      
Sbjct: 75  AAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANA 134

Query: 110 EKALEWKD-FLSLFYGSEEETSAFWP---PVCKDETLEYMKSSEVLIRRLMHVLVKGLNV 165
              LEW+D F  L    ++   + WP   P     T EY +S   L  +L+ +L  GL +
Sbjct: 135 SGQLEWEDYFFHLTLPEDKRDPSLWPKTPPDYVPATSEYSRSLRSLATKLLAILSLGLGL 194

Query: 166 K--RIDE---IREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLH 220
              R+++     E +LL   ++ +NYYP CP P+L +GV  H+D+S  T +L + + GL 
Sbjct: 195 PEDRLEKEVGGLEELLL---QMKINYYPRCPQPDLALGVEAHTDVSALTFILHNMVPGLQ 251

Query: 221 VRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPK 280
           V  +    W+    +  S++++IGD L+I+SNGRYKSI H  + N  + RIS  +F  P 
Sbjct: 252 VLYEG--KWVTAKCVPDSIVVHIGDTLEILSNGRYKSILHRGLVNKEKVRISWAVFCEPP 309

Query: 281 PEAILC-PFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKI 328
            E I+  P PE+++  E P + P     +  H   K    ++ ID A I
Sbjct: 310 KEKIILKPLPELVSKEEPPKFPPRTFGQHVSHKLFKKPQDERNIDAADI 358

Length = 360
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 331
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02904357 oxidoreductase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.88
PLN03176120 flavanone-3-hydroxylase; Provisional 99.82
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.46
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.49
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.81
TIGR02466201 conserved hypothetical protein. This family consis 86.57
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 82.29
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 82.13
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=4.9e-81  Score=589.88  Aligned_cols=322  Identities=29%  Similarity=0.551  Sum_probs=287.7

Q ss_pred             CCCCCCCcCcCCCccccccccc-CCCCCccEEeCCC--C--CCHHHHHHHHHHhHhcceEEEEcCCCCHHHHHHHHHHHH
Q 039524            2 GLKSLPKQFHQPLEERFSEKKI-LDQVSIPLIDMSN--W--ESPEVAKSICDAAENWGFFQIVNHGVPLEVLERVKEATH   76 (331)
Q Consensus         2 ~~~~~p~~~~~~~~~~~~~~~~-~~~~~iPvIDl~~--~--~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~   76 (331)
                      ++++||++|++|+.+++..... ....+||||||+.  .  .+++++++|.+||++||||||+||||+.++++++++.++
T Consensus        25 ~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~  104 (357)
T PLN02216         25 MITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQ  104 (357)
T ss_pred             CCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHH
Confidence            6789999999999998643211 1225899999987  2  235789999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHhcccccCCCCCcccccCCcccCcccccccccccccccCCCc-ccCCCCCh---hhHHHHHHHHHHHHHHH
Q 039524           77 RFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEE-ETSAFWPP---VCKDETLEYMKSSEVLI  152 (331)
Q Consensus        77 ~fF~lP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~wP~---~fr~~~~~y~~~~~~la  152 (331)
                      +||+||.|+|+++....  ...+||+........+..||+|.|.+...|.. ..+|.||+   .||+.+++|+++|.+|+
T Consensus       105 ~FF~LP~eeK~k~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~  182 (357)
T PLN02216        105 DFFNLPMEEKKKLWQRP--GEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIA  182 (357)
T ss_pred             HHHcCCHHHHHhhhcCC--CCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999997632  34789975543334567799999987655544 56789997   89999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCccccccccC-CceeeEeecCCCCCCCCCcccccCCCCCCceEEEEc-CCCCccccccCCCCCeE
Q 039524          153 RRLMHVLVKGLNVKRIDEIREPMLL-GSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQ-DDIGGLHVRKDSGNDWI  230 (331)
Q Consensus       153 ~~ll~~la~~Lgl~~~~~~~~~~~~-~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q-d~~~GLqV~~~~~g~W~  230 (331)
                      .+|+++||++||++ +++|.+.+.. ..+.||++|||||+.++..+|+++|||+|+||||+| ++++||||+++  |+|+
T Consensus       183 ~~ll~~la~~Lgl~-~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~--g~Wi  259 (357)
T PLN02216        183 KILFAKMASALEIK-PEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKD--GKWV  259 (357)
T ss_pred             HHHHHHHHHHcCCC-HHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEEC--CEEE
Confidence            99999999999999 9999988876 457899999999999888999999999999999999 56999999988  9999


Q ss_pred             EecCCCCeEEEEcchhhHHhhCCccccccceeecCCCCCeeeeeeeeCCCCCceeecCccccCCCCCCCCCCccHHHHHH
Q 039524          231 HVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAILCPFPEVLANGEKPLYKPVLCADYSR  310 (331)
Q Consensus       231 ~V~~~pg~lvVniGd~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~~i~pl~~~v~~~~p~~y~~~t~~e~~~  310 (331)
                      +|+|.||++|||+||+||+||||+|||++|||+.++.++|||++||++|+.|++|.|+++|+++++|++|+++|++||+.
T Consensus       260 ~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~  339 (357)
T PLN02216        260 SVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFD  339 (357)
T ss_pred             ECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHH
Confidence            99999999999999999999999999999999988888999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcccccccc
Q 039524          311 HFYTKAHDGKKTIDFAKI  328 (331)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~  328 (331)
                      .++.+.+.++..++.+||
T Consensus       340 ~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        340 GLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             HHHhcccCCcchhhhhcC
Confidence            999999999999998885

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-43
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-43
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-42
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-29
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 1e-13
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 4e-12
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 3e-08
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 3e-08
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 172/333 (51%), Gaps = 29/333 (8%)
Query: 2   GLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSNWESPE------VAKSICDA 49
           G+ S+PK++ +P EE       F E+K  D   +P ID+ N ES +        + +  A
Sbjct: 13  GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKA 72
Query: 50  AENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLV 109
           + +WG   ++NHG+P +++ERVK+A   FF+L  EEK KY+ + +       GS      
Sbjct: 73  SLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNA 132
Query: 110 EKALEWKD-FLSLFYGSEEETSAFWPPVCKD---ETLEYMKSSEVLIRRLMHVLVKGLNV 165
              LEW+D F  L Y  E+   + WP    D    T EY K   +L  ++   L  GL +
Sbjct: 133 SGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL 192
Query: 166 ------KRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGL 219
                 K +  + E +L    ++ +NYYP CP PEL +GV  H+D+S  T +L + + GL
Sbjct: 193 EPDRLEKEVGGLEELLL----QMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGL 248
Query: 220 HVRKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVN- 278
            +  +    W+    +  S++++IGD L+I+SNG+YKSI H  + N  + RIS  +F   
Sbjct: 249 QLFYE--GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 306
Query: 279 PKPEAILCPFPEVLANGEKPLYKPVLCADYSRH 311
           PK + +L P PE+++      + P   A +  H
Sbjct: 307 PKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-127
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-115
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-83
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-80
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-79
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-72
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  367 bits (944), Expect = e-127
 Identities = 104/347 (29%), Positives = 172/347 (49%), Gaps = 27/347 (7%)

Query: 2   GLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSNWESP------EVAKSICDA 49
           G+ S+PK++ +P EE       F E+K  D   +P ID+ N ES          + +  A
Sbjct: 14  GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKA 73

Query: 50  AENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLV 109
           + +WG   ++NHG+P +++ERVK+A   FF+L  EEK KY+ + +       GS      
Sbjct: 74  SLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNA 133

Query: 110 EKALEWKDFLSLF-YGSEEETSAFWP---PVCKDETLEYMKSSEVLIRRLMHVLVKGLNV 165
              LEW+D+     Y  E+   + WP       + T EY K   +L  ++   L  GL +
Sbjct: 134 SGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL 193

Query: 166 KRIDEIREPMLL---GSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVR 222
           +  D + + +        ++ +NYYP CP PEL +GV  H+D+S  T +L + + GL + 
Sbjct: 194 EP-DRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 252

Query: 223 KDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPE 282
            +    W+    +  S++++IGD L+I+SNG+YKSI H  + N  + RIS  +F  P  +
Sbjct: 253 YE--GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 310

Query: 283 A-ILCPFPEVLANGEKPLYKPVLCADYSRHFYTKAHDGKKTIDFAKI 328
             +L P PE+++      + P   A +  H       GK+  +    
Sbjct: 311 KIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL----FGKEQEELVSE 353
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 94.04
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.48
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 88.22
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 82.84
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 81.82
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 81.74
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 80.53
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-79  Score=581.06  Aligned_cols=319  Identities=31%  Similarity=0.572  Sum_probs=283.8

Q ss_pred             CCCCCCCCcCcCCCcccccccc---cC---CCCCccEEeCCC--CC----CHHHHHHHHHHhHhcceEEEEcCCCCHHHH
Q 039524            1 MGLKSLPKQFHQPLEERFSEKK---IL---DQVSIPLIDMSN--WE----SPEVAKSICDAAENWGFFQIVNHGVPLEVL   68 (331)
Q Consensus         1 ~~~~~~p~~~~~~~~~~~~~~~---~~---~~~~iPvIDl~~--~~----~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~   68 (331)
                      +|+.+||++|++|+.+++....   ..   ...+||||||+.  .+    +.+++++|.+||++||||||+||||+.+++
T Consensus        13 ~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~   92 (356)
T 1gp6_A           13 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLM   92 (356)
T ss_dssp             TTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHH
T ss_pred             cCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHH
Confidence            4688999999999888765311   00   124699999987  22    355889999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHhcccccCCCCCcccccCCcccCcccccccccccccccCCCc-ccCCCCCh---hhHHHHHHH
Q 039524           69 ERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEE-ETSAFWPP---VCKDETLEY  144 (331)
Q Consensus        69 ~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~wP~---~fr~~~~~y  144 (331)
                      +++++.+++||+||.|+|+++........++||+........+..||+|.|+++..|.. ..+|.||+   +||+.+++|
T Consensus        93 ~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y  172 (356)
T 1gp6_A           93 ERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEY  172 (356)
T ss_dssp             HHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHH
Confidence            99999999999999999999987532135789976654455678899999998866654 56789997   999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccccccc---CCceeeEeecCCCCCCCCCcccccCCCCCCceEEEEcCCCCcccc
Q 039524          145 MKSSEVLIRRLMHVLVKGLNVKRIDEIREPML---LGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHV  221 (331)
Q Consensus       145 ~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqV  221 (331)
                      +++|.+|+.+|+++|+++||++ +++|.+.+.   .+.+.||++|||||++++..+|+++|||+|+||||+||+++||||
T Consensus       173 ~~~~~~l~~~ll~~la~~Lgl~-~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV  251 (356)
T 1gp6_A          173 AKCLRLLATKVFKALSVGLGLE-PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQL  251 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSC-TTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEECSCCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC-HHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEEcCCCCeEE
Confidence            9999999999999999999999 999999887   477889999999999988889999999999999999999999999


Q ss_pred             ccCCCCCeEEecCCCCeEEEEcchhhHHhhCCccccccceeecCCCCCeeeeeeeeCCCCCc-eeecCccccCCCCCCCC
Q 039524          222 RKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEA-ILCPFPEVLANGEKPLY  300 (331)
Q Consensus       222 ~~~~~g~W~~V~~~pg~lvVniGd~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~-~i~pl~~~v~~~~p~~y  300 (331)
                      +++  |+|++|+|.||++||||||+||+||||+||||+|||+.++..+|||++||++|+.|+ +|.|+++|+++++|++|
T Consensus       252 ~~~--g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~~~p~~y  329 (356)
T 1gp6_A          252 FYE--GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKF  329 (356)
T ss_dssp             EET--TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSS
T ss_pred             ecC--CcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCCCCCccC
Confidence            987  999999999999999999999999999999999999998888999999999999999 99999999999999999


Q ss_pred             CCccHHHHHHHHHHhcCCCCcc
Q 039524          301 KPVLCADYSRHFYTKAHDGKKT  322 (331)
Q Consensus       301 ~~~t~~e~~~~~~~~~~~~~~~  322 (331)
                      +++|++||+..++.++++|+..
T Consensus       330 ~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          330 PPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             CCEEHHHHHHHHHHHHHHHHC-
T ss_pred             CCccHHHHHHHHHHhccCcchh
Confidence            9999999999999988776543
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 331
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-66
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 5e-58
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 5e-55
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-41
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  211 bits (537), Expect = 1e-66
 Identities = 101/337 (29%), Positives = 168/337 (49%), Gaps = 22/337 (6%)

Query: 2   GLKSLPKQFHQPLEER------FSEKKILDQVSIPLIDMSNWESP------EVAKSICDA 49
           G+ S+PK++ +P EE       F E+K  D   +P ID+ N ES          + +  A
Sbjct: 13  GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKA 72

Query: 50  AENWGFFQIVNHGVPLEVLERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLV 109
           + +WG   ++NHG+P +++ERVK+A   FF+L  EEK KY+ + +       GS      
Sbjct: 73  SLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNA 132

Query: 110 EKALEWKDFLSLFYGSEEETSAFW----PPVCKDETLEYMKSSEVLIRRLMH--VLVKGL 163
              LEW+D+       EE+         P    + T EY K   +L  ++     +  GL
Sbjct: 133 SGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL 192

Query: 164 NVKRIDEIREPMLLGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHVRK 223
              R+++    +     ++ +NYYP CP PEL +GV  H+D+S  T +L + + GL +  
Sbjct: 193 EPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFY 252

Query: 224 DSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEA 283
           +    W+    +  S++++IGD L+I+SNG+YKSI H  + N  + RIS  +F  P  + 
Sbjct: 253 E--GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDK 310

Query: 284 -ILCPFPEVLANGEKPLYKPVLCADYSRH-FYTKAHD 318
            +L P PE+++      + P   A +  H  + K  +
Sbjct: 311 IVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQE 347
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.62
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.1e-76  Score=556.55  Aligned_cols=312  Identities=32%  Similarity=0.582  Sum_probs=273.3

Q ss_pred             CCCCCCCCcCcCCCccccccc------ccCCCCCccEEeCCC--C----CCHHHHHHHHHHhHhcceEEEEcCCCCHHHH
Q 039524            1 MGLKSLPKQFHQPLEERFSEK------KILDQVSIPLIDMSN--W----ESPEVAKSICDAAENWGFFQIVNHGVPLEVL   68 (331)
Q Consensus         1 ~~~~~~p~~~~~~~~~~~~~~------~~~~~~~iPvIDl~~--~----~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~   68 (331)
                      ||+++||+.|++|+.+++...      ...+..+||||||+.  .    .+++++++|.+||+++|||||+||||+.+++
T Consensus        12 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li   91 (349)
T d1gp6a_          12 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLM   91 (349)
T ss_dssp             TTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHH
T ss_pred             CCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHH
Confidence            799999999999998887642      224567899999987  2    2457889999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHhcccccCCCCCcccccCCcccCcccccccccccccccCCCc-ccCCCCCh---hhHHHHHHH
Q 039524           69 ERVKEATHRFFALPAEEKRKYSKENSPTNKVRLGSSFVPLVEKALEWKDFLSLFYGSEE-ETSAFWPP---VCKDETLEY  144 (331)
Q Consensus        69 ~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~-~~~~~wP~---~fr~~~~~y  144 (331)
                      +++++++++||+||.|+|+++......+.+.||+...........+|.+.+.....+.. ..+|.||+   .|++.+++|
T Consensus        92 ~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~e~~~~~  171 (349)
T d1gp6a_          92 ERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEY  171 (349)
T ss_dssp             HHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccchHHHHHHHH
Confidence            99999999999999999999987544344556654444445556677666543333333 56788997   899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccccccc---CCceeeEeecCCCCCCCCCcccccCCCCCCceEEEEcCCCCcccc
Q 039524          145 MKSSEVLIRRLMHVLVKGLNVKRIDEIREPML---LGSRRVNLNYYPMCPNPELTVGVGRHSDISTFTILLQDDIGGLHV  221 (331)
Q Consensus       145 ~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqV  221 (331)
                      +++|.+++.+|+++++++||++ +++|.+.+.   ...+.||++|||+++.+...+|+++|||+|+||||+|+.++||||
T Consensus       172 ~~~~~~la~~ll~~la~~Lgl~-~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~GLqv  250 (349)
T d1gp6a_         172 AKCLRLLATKVFKALSVGLGLE-PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQL  250 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSC-TTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEECSCCCEEE
T ss_pred             HHHHHHHHHhhhHHHHHHcCCC-HHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEeccCCcceee
Confidence            9999999999999999999999 999988774   356789999999999988899999999999999999999999999


Q ss_pred             ccCCCCCeEEecCCCCeEEEEcchhhHHhhCCccccccceeecCCCCCeeeeeeeeCCCCCcee-ecCccccCCCCCCCC
Q 039524          222 RKDSGNDWIHVAPISGSLIINIGDALQIMSNGRYKSIEHCVIANGSQNRISVPLFVNPKPEAIL-CPFPEVLANGEKPLY  300 (331)
Q Consensus       222 ~~~~~g~W~~V~~~pg~lvVniGd~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~pl~~~v~~~~p~~y  300 (331)
                      +++  |+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++|||++||++|+.|++| +|+++||++++|++|
T Consensus       251 ~~~--g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y  328 (349)
T d1gp6a_         251 FYE--GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKF  328 (349)
T ss_dssp             EET--TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSS
T ss_pred             ecC--CceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCC
Confidence            988  99999999999999999999999999999999999999988999999999999999865 899999999999999


Q ss_pred             CCccHHHHHHHHHHh
Q 039524          301 KPVLCADYSRHFYTK  315 (331)
Q Consensus       301 ~~~t~~e~~~~~~~~  315 (331)
                      +|+|++||++.++..
T Consensus       329 ~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         329 PPRTFAQHIEHKLFG  343 (349)
T ss_dssp             CCEEHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHhc
Confidence            999999999998753
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure