Citrus Sinensis ID: 039539

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
MPGLHSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPRPPALIRNNVSHGVKSKKKNLEAVDLNNTSKIRSNSYIPSLDSKAQQKPCTDSNQLFDRDEWKFRSMQRSPAVDSLSESSSIFSWSDVSSCSTASTKESSRSEDLSDLIFGDTPSWYRSYGITSDSIASSSYQNSNVGSEGENDAWQHGWREGLGRDGNPAILFTESTKQYRNLGHQYVSNGSSRDIDSDRVGWANPSDVRLRRANGDYRSAQPFY
ccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccEEEEEEEEEcccccccccccccEEEEEcccccccHHHHHHHHccccccccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccEEEccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEEcccccEEEEEcccEEEcccHHHcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccHcccHHHHHccccEccEEEEEEcccccccccccccEEEEccccHHHHHHHHHHHccHHHccccccccHHHHHHcccccEEEEEEccccEEEEEEEEEcccccccEEEEcccccccccccccccccccccEEEEEEEEEEccccccccccEEEEEEEcccccEEEEccccEEEccHHHHHHccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEccccccccccccccccccccEEEEEcccccccccccc
MPGLHSTFDVVSCLILnakdgsypvspigILSKIQKIGshlghgreedAHEFLRCAVDTMQSVCLKefgakgkiaeettlIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRfesgnfgklnksvwfpevlnmapymsrtgdgspmySLYAVVVHLDVTNATFSGHYVCYVKNsheewfriddstvipvKLERVLSEEAYMLLYArhsprppalirnnvshgvkskkknleavdlnntskirsnsyipsldskaqqkpctdsnqlfdrdewkfrsmqrspavdslsesssifswsdvsscstastkessrsedlsdlifgdtpswyrsygitsdsiasssyqnsnvgsegendawqhgwreglgrdgnpailfTESTKQYRNLGhqyvsngssrdidsdrvgwanpsdvrlrrangdyrsaqpfy
MPGLHSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFgakgkiaeettligltfggylrskIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTaseilvgenkYYCSRCKSYEKAkkkltvleepniLTIVLKrfesgnfgklnksvWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYArhsprppalIRNNVshgvkskkknleavdlnntskirsnsyipsldskaqqkpcTDSNQLFDRDEWKFRSMQRSPAVDSLSESSSIFSWSDVSSCStastkessrsedlsdlifGDTPSWYRSYGITSDSIASSSYQNSNVGSEGENDAWQHGWREGLGRDGNPAILFTESTKQYRNLGHQYvsngssrdidsdrvgwanpsdvrlrrangdyrsaqpfy
MPGLHSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPRPPALIRNNVSHGVKSKKKNLEAVDLNNTSKIRSNSYIPSLDSKAQQKPCTDSNQLFDRDEWKFRSMQRSPAVDslsesssifswsdvsscstastkessrseDLSDLIFGDTPSWYRSYGITSDSIASSSYQNSNVGSEGENDAWQHGWREGLGRDGNPAILFTESTKQYRNLGHQYVSNGSSRDIDSDRVGWANPSDVRLRRANGDYRSAQPFY
******TFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARH*************************************************************************************************************LIFGDTPSWYRSYGIT**********************WQHGWREGLGRDGNPAILFTESTKQYRNLGH****************************************
**GLHSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQ******************LIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYA****************************************************************************************************************************************************************************************************************************
MPGLHSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPRPPALIRNNVSHGVKSKKKNLEAVDLNNTSKIRSNSYIPS**********TDSNQLFDRDEWKFRS**************************************LSDLIFGDTPSWYRSYGITSDSI****************DAWQHGWREGLGRDGNPAILFTESTKQYRNLGHQYVSNGSSRDIDSDRVGWANPSDVRLRRANGDYRSAQPFY
**GLHSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHS******************************************************************************************************SEDLSDLIFGDTPSWY********************************************I*****TKQYRNL*H*YV*************************************
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MPGLHSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPRPPALIRNNVSHGVKSKKKNLEAVDLNNTSKIRSNSYIPSLDSKAQQKPCTDSNQLFDRDEWKFRSMQRSPAVDSLSESSSIFSWSDVSSCSTASTKESSRSEDLSDLIFGDTPSWYRSYGITSDSIASSSYQNSNVGSEGENDAWQHGWREGLGRDGNPAILFTESTKQYRNLGHQYVSNGSSRDIDSDRVGWANPSDVRLRRANGDYRSAQPFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query484 2.2.26 [Sep-21-2011]
Q9FKP5731 Ubiquitin carboxyl-termin yes no 0.698 0.462 0.576 1e-107
Q9SB511008 Ubiquitin carboxyl-termin no no 0.741 0.356 0.510 5e-93
Q9SJA1672 Ubiquitin carboxyl-termin no no 0.518 0.373 0.570 3e-82
Q9FPS9924 Ubiquitin carboxyl-termin no no 0.681 0.357 0.435 1e-80
Q67XW5631 Ubiquitin carboxyl-termin no no 0.568 0.435 0.519 5e-80
B1AQJ2 1098 Ubiquitin carboxyl-termin yes no 0.491 0.216 0.402 2e-51
D3ZU96 1325 Ubiquitin carboxyl-termin no no 0.491 0.179 0.406 5e-51
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.489 0.179 0.413 6e-51
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.491 0.178 0.406 6e-51
B2RQC2 1324 Ubiquitin carboxyl-termin no no 0.491 0.179 0.406 8e-51
>sp|Q9FKP5|UBP17_ARATH Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1 Back     alignment and function desciption
 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/373 (57%), Positives = 258/373 (69%), Gaps = 35/373 (9%)

Query: 14  LILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGK 73
           LIL A+ G  P+SPI ILSK+QKIG HLG G+EEDAHEFLRCAVDTMQSV LKE  A G 
Sbjct: 380 LILKARGGESPLSPIKILSKLQKIGKHLGPGKEEDAHEFLRCAVDTMQSVFLKEAPAAGP 439

Query: 74  IAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASE 133
            AEETTL+GLTFGGYL SKIKC+ CL KSE  E MMDLTVEIDGDIG+LEEALAQFTA E
Sbjct: 440 FAEETTLVGLTFGGYLHSKIKCMACLHKSERPELMMDLTVEIDGDIGSLEEALAQFTAYE 499

Query: 134 ILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMA 193
           +L GEN+Y+C RCKSY+KAKKKL +LE PNILT+VLKRF+S NFGKL+K + FPE+L+++
Sbjct: 500 VLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQSDNFGKLSKPIHFPELLDIS 559

Query: 194 PYMSRTGDGS-PMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLER 252
           PYMS    G  P+YSLYAVVVHLD  +  FSGHYVCY+K    +WF+IDDS V PV+LE 
Sbjct: 560 PYMSDPNHGDHPVYSLYAVVVHLDAMSTLFSGHYVCYIKTLDGDWFKIDDSNVFPVQLET 619

Query: 253 VLSEEAYMLLYARHSPRPPALIRNNVSHGVKSKKKNLEAVDLNNTSKIRSNSYIPSLDSK 312
           VL E AYMLLYAR SPRP  + +N    G KSK++             R+ + IPS    
Sbjct: 620 VLLEGAYMLLYARDSPRP--VSKNG---GRKSKQR-------------RNLAAIPSRKGN 661

Query: 313 AQQKPCTDSNQLFDRDEWKFRSMQRSPAVDSLSESSSIFSWSDVSSCSTASTKESSRSED 372
            +Q+   D+N L  R +W   S+    +    +              S+ STK+SS  E+
Sbjct: 662 KKQRD-GDNNSLLPRVDWSSGSLSSMFSSSDTT--------------SSCSTKDSSGIEN 706

Query: 373 LSDLIFGDT-PSW 384
           LSD +FG   P W
Sbjct: 707 LSDYLFGGVEPVW 719
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2 Back     alignment and function description
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2 Back     alignment and function description
>sp|Q67XW5|UBP18_ARATH Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2 Back     alignment and function description
>sp|B1AQJ2|UBP36_MOUSE Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1 Back     alignment and function description
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
359495665 942 PREDICTED: ubiquitin carboxyl-terminal h 0.969 0.497 0.581 1e-144
356502067 938 PREDICTED: ubiquitin carboxyl-terminal h 0.929 0.479 0.595 1e-136
356497712 927 PREDICTED: ubiquitin carboxyl-terminal h 0.923 0.482 0.595 1e-135
359496742 860 PREDICTED: ubiquitin carboxyl-terminal h 0.768 0.432 0.671 1e-133
225459111 1213 PREDICTED: ubiquitin carboxyl-terminal h 0.735 0.293 0.623 1e-126
147776521 1225 hypothetical protein VITISV_003549 [Viti 0.735 0.290 0.623 1e-125
255545936 1060 conserved hypothetical protein [Ricinus 0.942 0.430 0.523 1e-120
302142049 841 unnamed protein product [Vitis vinifera] 0.607 0.349 0.689 1e-117
224063313 1095 predicted protein [Populus trichocarpa] 0.956 0.422 0.504 1e-116
255579710 777 cysteine-type endopeptidase, putative [R 0.741 0.462 0.630 1e-116
>gi|359495665|ref|XP_003635052.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 290/499 (58%), Positives = 346/499 (69%), Gaps = 30/499 (6%)

Query: 13  CLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKG 72
           CLIL A++G  P+SP+GILS+IQ+IGSHLGHGREEDAHEFLR AVDTMQSVCLK+ G  G
Sbjct: 447 CLILEAREGKSPLSPMGILSQIQRIGSHLGHGREEDAHEFLRYAVDTMQSVCLKDTGVVG 506

Query: 73  KIAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTAS 132
            +AE+TTL+GLTFGGYL SKIKC+KC GKSE  ERMMDLTVEIDGDIGTLEEALAQFTA+
Sbjct: 507 PLAEDTTLVGLTFGGYLLSKIKCMKCQGKSERCERMMDLTVEIDGDIGTLEEALAQFTAT 566

Query: 133 EILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNM 192
           EIL GENKY C RC+SYEKAKKKL VLE PNILTIVLKRF+S NFGKLNKSV FPE LN+
Sbjct: 567 EILDGENKYQCGRCRSYEKAKKKLMVLEAPNILTIVLKRFQSSNFGKLNKSVRFPETLNL 626

Query: 193 APYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLER 252
            PYMS T D  P+YSLYAVVVHLD+ NA FSGHYVC+VKN   +WFRIDDSTV PV+L+R
Sbjct: 627 TPYMSGTDDRYPVYSLYAVVVHLDIMNAAFSGHYVCFVKNFLGDWFRIDDSTVTPVELDR 686

Query: 253 VLSEEAYMLLYARHSPRPPALIRN-NVSHGVKSKKKNLEAVDLN-NTSKIRSNSYIPSLD 310
           VL E AYMLLYAR SP+PPAL RN  VSH  K K +NLEAV  +   +K RSNS +P +D
Sbjct: 687 VLLEGAYMLLYARRSPKPPALSRNMAVSHEGKLKMRNLEAVPSSLAATKPRSNSAVPGVD 746

Query: 311 SKAQQKPCTD----------SNQLFDRDEWKFRSMQRSPAVD-SLSESSSIFSWSDVSSC 359
               Q+   +          SNQ    ++W+  SMQR   VD S   SS     SD  SC
Sbjct: 747 RSMIQRKLENSCWTTWDGPTSNQWLRPEDWRSHSMQRVGVVDSSSESSSLFSCCSDEGSC 806

Query: 360 STASTKESSRSEDLSDLIFGDTP-SWYRSYGITSDS------IASSSYQNSNVGSEGEND 412
           ST ST +S+ + D SD IFG+   SWYR+YG++SDS       +  S  + + G +G   
Sbjct: 807 STESTNDSASTGDFSDYIFGEVGNSWYRNYGLSSDSDITPSLFSRPSGSSRSNGGDGVRR 866

Query: 413 AWQH---GWREGLGRDGNPAILFTESTKQYRNLGHQYVSNGSSRDIDSDRVGWANPSDVR 469
              H    W E L  +GN + L+  ++K  +    Q+   GSS + D  R+    P DV+
Sbjct: 867 RLPHQGSSWGEELEGEGNSSFLYNGTSKHSKMCTTQF--GGSSSETDLGRLVAGKPIDVK 924

Query: 470 ----LRRANGDYRSAQPFY 484
                +RA+ + RSAQ FY
Sbjct: 925 SGVPFKRASRE-RSAQTFY 942

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356502067|ref|XP_003519843.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Glycine max] Back     alignment and taxonomy information
>gi|356497712|ref|XP_003517703.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Glycine max] Back     alignment and taxonomy information
>gi|359496742|ref|XP_003635320.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225459111|ref|XP_002283885.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147776521|emb|CAN74012.1| hypothetical protein VITISV_003549 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255545936|ref|XP_002514028.1| conserved hypothetical protein [Ricinus communis] gi|223547114|gb|EEF48611.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|302142049|emb|CBI19252.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224063313|ref|XP_002301091.1| predicted protein [Populus trichocarpa] gi|222842817|gb|EEE80364.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255579710|ref|XP_002530694.1| cysteine-type endopeptidase, putative [Ricinus communis] gi|223529750|gb|EEF31689.1| cysteine-type endopeptidase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
TAIR|locus:2168282731 UBP17 "AT5G65450" [Arabidopsis 0.603 0.399 0.653 4.5e-98
TAIR|locus:21219591008 UBP16 "ubiquitin-specific prot 0.787 0.377 0.479 1.8e-87
TAIR|locus:2046678672 UBP19 "AT2G24640" [Arabidopsis 0.574 0.413 0.531 3.5e-75
TAIR|locus:2124809631 UBP18 "AT4G31670" [Arabidopsis 0.601 0.461 0.498 1.2e-74
DICTYBASE|DDB_G0274827 919 DDB_G0274827 "putative ubiquit 0.566 0.298 0.421 5.3e-51
ZFIN|ZDB-GENE-030131-5739 1047 usp42 "ubiquitin specific pept 0.502 0.232 0.422 8.7e-50
MGI|MGI:1924050 1324 Usp42 "ubiquitin specific pept 0.489 0.179 0.413 2.8e-49
ZFIN|ZDB-GENE-030131-5450 1104 usp36 "ubiquitin specific pept 0.522 0.229 0.386 8e-49
MGI|MGI:1919594 1098 Usp36 "ubiquitin specific pept 0.597 0.263 0.373 1.4e-48
UNIPROTKB|E1C4I0 1234 USP42 "Ubiquitin carboxyl-term 0.489 0.192 0.404 2.9e-48
TAIR|locus:2168282 UBP17 "AT5G65450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 198/303 (65%), Positives = 234/303 (77%)

Query:    14 LILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGK 73
             LIL A+ G  P+SPI ILSK+QKIG HLG G+EEDAHEFLRCAVDTMQSV LKE  A G 
Sbjct:   380 LILKARGGESPLSPIKILSKLQKIGKHLGPGKEEDAHEFLRCAVDTMQSVFLKEAPAAGP 439

Query:    74 IAEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASE 133
              AEETTL+GLTFGGYL SKIKC+ CL KSE  E MMDLTVEIDGDIG+LEEALAQFTA E
Sbjct:   440 FAEETTLVGLTFGGYLHSKIKCMACLHKSERPELMMDLTVEIDGDIGSLEEALAQFTAYE 499

Query:   134 ILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMA 193
             +L GEN+Y+C RCKSY+KAKKKL +LE PNILT+VLKRF+S NFGKL+K + FPE+L+++
Sbjct:   500 VLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQSDNFGKLSKPIHFPELLDIS 559

Query:   194 PYMSRTGDGS-PMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLER 252
             PYMS    G  P+YSLYAVVVHLD  +  FSGHYVCY+K    +WF+IDDS V PV+LE 
Sbjct:   560 PYMSDPNHGDHPVYSLYAVVVHLDAMSTLFSGHYVCYIKTLDGDWFKIDDSNVFPVQLET 619

Query:   253 VLSEEAYMLLYARHSPRPPALIRNNVSHGVKSK-KKNLEAVDLNNTSKIR----SNSYIP 307
             VL E AYMLLYAR SPRP +  +N    G KSK ++NL A+     +K +    +NS +P
Sbjct:   620 VLLEGAYMLLYARDSPRPVS--KNG---GRKSKQRRNLAAIPSRKGNKKQRDGDNNSLLP 674

Query:   308 SLD 310
              +D
Sbjct:   675 RVD 677
GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;ISS
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2121959 UBP16 "ubiquitin-specific protease 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046678 UBP19 "AT2G24640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124809 UBP18 "AT4G31670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274827 DDB_G0274827 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5739 usp42 "ubiquitin specific peptidase 42" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1924050 Usp42 "ubiquitin specific peptidase 42" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5450 usp36 "ubiquitin specific peptidase 36" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1919594 Usp36 "ubiquitin specific peptidase 36" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4I0 USP42 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.19LOW CONFIDENCE prediction!
3rd Layer3.4.19.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-106
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 1e-57
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 8e-57
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 1e-53
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 8e-46
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 2e-44
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 3e-41
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 2e-33
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 9e-31
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 4e-26
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 6e-25
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 1e-21
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 5e-19
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 9e-18
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 1e-17
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 4e-15
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 2e-14
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 8e-11
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 1e-08
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 2e-08
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 5e-08
COG5207749 COG5207, UBP14, Isopeptidase T [Posttranslational 0.003
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  318 bits (818), Expect = e-106
 Identities = 118/247 (47%), Positives = 158/247 (63%), Gaps = 6/247 (2%)

Query: 21  GSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKI---AEE 77
                +P    S +++I  H   GR+EDAHEFLR  +D MQ  CL  F     +   ++E
Sbjct: 61  SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQE 120

Query: 78  TTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVG 137
           TTL+   FGGYLRS++KCL C   S  Y+  +DL+++I G   +LE+AL QFT  E L G
Sbjct: 121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA-DSLEDALEQFTKPEQLDG 179

Query: 138 ENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMS 197
           ENKY C RCK   KA K+LT+   PN+LTI LKRF +   GK+NK + FPE L+++PYMS
Sbjct: 180 ENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239

Query: 198 RTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVKLERVLSEE 257
           +  DG   Y LYAV+VH   +    SGHY CYVK+S+ +W+ +DDS V PV +E VLS++
Sbjct: 240 QPNDGPLKYKLYAVLVHSGFSP--HSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQK 297

Query: 258 AYMLLYA 264
           AY+L Y 
Sbjct: 298 AYILFYI 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 484
KOG1865545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 99.98
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.97
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 99.97
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.97
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 99.96
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.95
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.84
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.82
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.79
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 99.53
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 97.77
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 94.27
KOG3556724 consensus Familial cylindromatosis protein [Genera 85.75
PF08715320 Viral_protease: Papain like viral protease; InterP 85.3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-63  Score=516.60  Aligned_cols=260  Identities=48%  Similarity=0.844  Sum_probs=250.9

Q ss_pred             cchHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccc
Q 039539            4 LHSTFDVVSCLILNAKDGSY-PVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIG   82 (484)
Q Consensus         4 l~sL~~~l~~L~~~~~~~~~-~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~   82 (484)
                      -.|++|+|+.++.......+ +|+|..|++.|+.|+..|+.|+|+||||||+++||.|+..|+.......+..+++++|+
T Consensus       150 ~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~  229 (545)
T KOG1865|consen  150 KFCMLCTFQAHITRALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVH  229 (545)
T ss_pred             CeeeehHHHHHHHHHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehh
Confidence            35889999999999888776 99999999999999999999999999999999999999999977777788889999999


Q ss_pred             cceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecC
Q 039539           83 LTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEP  162 (484)
Q Consensus        83 ~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP  162 (484)
                      ++|+|.++++++|..|+++|.++|++++|+|+|. ++.+|++||++|+++|.|+|+|+|.|++|+++++|.|+++|.++|
T Consensus       230 ~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raP  308 (545)
T KOG1865|consen  230 QIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAP  308 (545)
T ss_pred             hhhccchhhceecccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCC
Confidence            9999999999999999999999999999999999 789999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEeeeccCCccccccEEEcCCcccCCcCcCCCCCCCCeEEEEEEEEEeecCCCCCCceEEEEEEcCCCcEEEEcC
Q 039539          163 NILTIVLKRFESGNFGKLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDD  242 (484)
Q Consensus       163 ~VLiI~LkRF~~~~~~Ki~~~V~fPe~LdL~~y~~~~~~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~~~~W~~fnD  242 (484)
                      +||+|+||||+.+.+.||++.|.||+.|||.+||..+.+.+.+|.|||||||.|++  +++|||+||||..+|.||+|||
T Consensus       309 nVLTi~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~--~~~GHY~cYvks~~g~Wy~~DD  386 (545)
T KOG1865|consen  309 NVLTLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTS--CHSGHYFCYVKSQNGQWYKMDD  386 (545)
T ss_pred             ceEEEeeehhccCcccccccccCCcccccccccccCCCCCCceEEEEEEEEecccc--ccCCceEEEEEcCCCceEEccC
Confidence            99999999999999999999999999999999999888899999999999999964  8999999999999999999999


Q ss_pred             CcceeeCcccccCCCcEEEEEEec
Q 039539          243 STVIPVKLERVLSEEAYMLLYARH  266 (484)
Q Consensus       243 s~V~~vs~~~v~s~~AYmLfY~R~  266 (484)
                      +.|+.++.+.|+++.||||||.|.
T Consensus       387 S~V~~~~~~~VLsq~AYmLfY~R~  410 (545)
T KOG1865|consen  387 SEVTQSSIESVLSQQAYILFYARK  410 (545)
T ss_pred             ceeeeccccceecccceEEEEEee
Confidence            999999999999999999999998

>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 6e-22
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 6e-22
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 6e-22
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 4e-19
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 2e-18
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 2e-18
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 2e-18
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 2e-18
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 4e-17
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 5e-17
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 5e-17
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 2e-16
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 1e-15
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 124/255 (48%), Gaps = 23/255 (9%)
Query: 28  IGILSKIQKIGSHLGHGREEDAHEFLRCAVDTM-QSVCLKEFGAK----GKIAEETTLIG 82
           I +L+   KI  +L    ++DAHEF +  ++ + QS  L    AK        +   ++ 
Sbjct: 222 IYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVH 281
Query: 83  LTFGGYLRSKIKCLKCLGKSEL-YERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKY 141
             F G L S I C  C   S+   +  +DL+++I  D   L E L  F   E L   N Y
Sbjct: 282 TVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIK-DKKKLYECLDSFHKKEQLKDFN-Y 339
Query: 142 YCSRCKSYEKAKKKLTVLEEPNILTIVLKRFE---SGNFGKLNKSVWFPEVLNMAPYMS- 197
           +C  C S + A K+L + + P++L + LKRFE   +G+  KL+  + FP  LNM  Y S 
Sbjct: 340 HCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCST 399
Query: 198 -----RTGDGSP---MYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTVIPVK 249
                 + +G     +Y L  +V H    N    GHY+ + K S  +WF+ +DS V  + 
Sbjct: 400 KEKDKHSENGKVPDIIYELIGIVSHKGTVN---EGHYIAFCKISGGQWFKFNDSMVSSIS 456
Query: 250 LERVLSEEAYMLLYA 264
            E VL E+AY+L Y 
Sbjct: 457 QEEVLKEQAYLLFYT 471
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 7e-91
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 7e-84
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 2e-76
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2e-75
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 3e-67
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 2e-63
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 1e-62
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 2e-50
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-15
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 7e-12
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 1e-14
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
 Score =  284 bits (727), Expect = 7e-91
 Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 23/262 (8%)

Query: 24  PVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGA-----KGKIAEET 78
               I +L+   KI  +L    ++DAHEF +  ++ +    + +        +    +  
Sbjct: 218 QTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCE 277

Query: 79  TLIGLTFGGYLRSKIKCLKCLGKSEL-YERMMDLTVEIDGDIGTLEEALAQFTASEILVG 137
            ++   F G L S I C  C   S+   +  +DL+++I      L E L  F   E L  
Sbjct: 278 CIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKD 336

Query: 138 ENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFE---SGNFGKLNKSVWFPEVLNMAP 194
            N Y+C  C S + A K+L + + P++L + LKRFE   +G+  KL+  + FP  LNM  
Sbjct: 337 FN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKN 395

Query: 195 YMSRTGDGSP---------MYSLYAVVVHLDVTNATFSGHYVCYVKNSHEEWFRIDDSTV 245
           Y S                +Y L  +V H    N    GHY+ + K S  +WF+ +DS V
Sbjct: 396 YCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVN---EGHYIAFCKISGGQWFKFNDSMV 452

Query: 246 IPVKLERVLSEEAYMLLYARHS 267
             +  E VL E+AY+L Y    
Sbjct: 453 SSISQEEVLKEQAYLLFYTIRQ 474
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.7
3mp2_A211 Non-structural protein 3; papain-like protease, TG 92.69
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 84.05
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.9e-53  Score=435.70  Aligned_cols=263  Identities=26%  Similarity=0.444  Sum_probs=233.3

Q ss_pred             chHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCC--------CCC-
Q 039539            5 HSTFDVVSCLILNAKDGS-YPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAK--------GKI-   74 (484)
Q Consensus         5 ~sL~~~l~~L~~~~~~~~-~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~--------~~~-   74 (484)
                      .+|.++|+.|+.+||.+. .+++|..|+..|+...+.|.+++||||||||.+|||.|++++.......        +.. 
T Consensus        56 ~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~  135 (367)
T 2y6e_A           56 GEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPD  135 (367)
T ss_dssp             THHHHHHHHHHHHHTSSSCSEECCHHHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCH
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCch
Confidence            468899999999999875 4899999999999999999999999999999999999999875322110        000 


Q ss_pred             ------------cccccccccceeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCC------------------cCcHHH
Q 039539           75 ------------AEETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGD------------------IGTLEE  124 (484)
Q Consensus        75 ------------~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~------------------~~sLee  124 (484)
                                  ....++|.++|+|++.+.++|..|++.+.+.|+|++|+|+|+..                  ..+|++
T Consensus       136 ~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~  215 (367)
T 2y6e_A          136 AVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRD  215 (367)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHH
T ss_pred             hHHHHHHHHHHHHhcCCccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHH
Confidence                        11357899999999999999999999999999999999999753                  258999


Q ss_pred             HHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCeEEEEEeeeccCCc--cccccEEEcCC-cccCCcCcCCCCC
Q 039539          125 ALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNF--GKLNKSVWFPE-VLNMAPYMSRTGD  201 (484)
Q Consensus       125 ~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~VLiI~LkRF~~~~~--~Ki~~~V~fPe-~LdL~~y~~~~~~  201 (484)
                      ||+.|+.+|.|+|+|+|.|++|+.++.|.|+..|.++|+||+|||+||.++..  .|+++.|.||. .|||.+|+.....
T Consensus       216 ~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~  295 (367)
T 2y6e_A          216 CIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA  295 (367)
T ss_dssp             HHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS
T ss_pred             HHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC
Confidence            99999999999999999999999999999999999999999999999998753  79999999996 7999999987766


Q ss_pred             CCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEEEEcCCcceeeCcccccCCCcEEEEEEecCCCC
Q 039539          202 GSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-HEEWFRIDDSTVIPVKLERVLSEEAYMLLYARHSPRP  270 (484)
Q Consensus       202 ~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-~~~W~~fnDs~V~~vs~~~v~s~~AYmLfY~R~~~~~  270 (484)
                      ....|+|+|||+|.|   ++++|||+||+|+. +++||+|||+.|+++++++|++..||||||+|++..+
T Consensus       296 ~~~~Y~L~avv~H~G---~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~  362 (367)
T 2y6e_A          296 RPYVYDLIAVSNHYG---AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEF  362 (367)
T ss_dssp             CCCEEEEEEEEEEEC---SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC--
T ss_pred             CCceEEEEEEeecCC---CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCC
Confidence            778999999999999   36799999999986 7899999999999999999999999999999988643
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 484
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 3e-38
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 3e-33
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 6e-25
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 9e-21
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7e-16
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-07
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (354), Expect = 3e-38
 Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 29/268 (10%)

Query: 24  PVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAE------- 76
            +SP      I KI        ++D+ E L   +D +     K    K    E       
Sbjct: 83  YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDD 142

Query: 77  --------------ETTLIGLTFGGYLRSKIKCLKCLGKSELYERMMDLTVEI-DGDIGT 121
                           ++I   F G  +S ++CL C  KS  +E  M L++ +      T
Sbjct: 143 FKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCT 202

Query: 122 LEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNILTIVLKRFESGNFG--- 178
           L++ L  F+  E L   N++YCS C++   + KK+ + + P +L + LKRF         
Sbjct: 203 LQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQK 262

Query: 179 KLNKSVWFPEVLNMAPYMSRTGDGSPMYSLYAVVVHLDVTNATFSGHYVCYVKN-SHEEW 237
                 +  E L+++ Y+    +    Y+L++V  H    +    GHY  Y KN + + W
Sbjct: 263 LQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLD---GGHYTAYCKNAARQRW 319

Query: 238 FRIDDSTVIPVKLERVLSEEAYMLLYAR 265
           F+ DD  V  + +  V S  AY+L Y  
Sbjct: 320 FKFDDHEVSDISVSSVKSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-46  Score=377.62  Aligned_cols=250  Identities=26%  Similarity=0.385  Sum_probs=220.0

Q ss_pred             chHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccc
Q 039539            5 HSTFDVVSCLILNAKDGSYPVSPIGILSKIQKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEFGAKGKIAEETTLIGLT   84 (484)
Q Consensus         5 ~sL~~~l~~L~~~~~~~~~~isP~~~~~~L~~~~~~f~~~~QqDA~EFl~~LLd~L~~e~~~~~~~~~~~~~~~siI~~l   84 (484)
                      .++.++|++||.+|+.+..++.|..++..+.  ...|..+.||||+||+..||+.|++++....        ..++|.++
T Consensus        47 ~~~~~~l~~lf~~l~~~~~~~~~~~~~~~~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~--------~~~~i~~l  116 (347)
T d1nbfa_          47 KSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC--------VEGTIPKL  116 (347)
T ss_dssp             TCHHHHHHHHHHHHHHCSSCBCCHHHHHHTT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTST--------TTTHHHHH
T ss_pred             chHHHHHHHHHHHHhcCCCCcChHHHHHhhc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhcc--------ccccccce
Confidence            5688999999999999988999999988774  4568889999999999999999998764322        23669999


Q ss_pred             eeEEEEEEEEECCCCCeEeeEeeeeeeeeeccCCcCcHHHHHHhhhcceeecCCCeeecCCCCceeeEEEEEEEeecCCe
Q 039539           85 FGGYLRSKIKCLKCLGKSELYERMMDLTVEIDGDIGTLEEALAQFTASEILVGENKYYCSRCKSYEKAKKKLTVLEEPNI  164 (484)
Q Consensus        85 F~G~l~s~i~C~~C~~~S~~~E~f~~LsL~I~~~~~sLee~L~~~~~~E~Ldg~nky~C~~C~~~~~a~k~~~i~~lP~V  164 (484)
                      |.|.+.+.++|..|+..+.+.|+|+.|+|+++. ..+++++|..++.+|.+++++++.|..| +...+.|+..|.++|+|
T Consensus       117 F~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~~-~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~v  194 (347)
T d1nbfa_         117 FRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG-KKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPV  194 (347)
T ss_dssp             HCEEEEEEEEESSSCCEEEEEEEESSEEEECTT-CCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSE
T ss_pred             eceEEEEeEEeCCccceeeeecccccccccccc-ccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCCh
Confidence            999999999999999999999999999999986 4799999999999999999998888776 56889999999999999


Q ss_pred             EEEEEeeeccC----CccccccEEEcCCcccCCcCcCCCC-CCCCeEEEEEEEEEeecCCCCCCceEEEEEEcC-CCcEE
Q 039539          165 LTIVLKRFESG----NFGKLNKSVWFPEVLNMAPYMSRTG-DGSPMYSLYAVVVHLDVTNATFSGHYVCYVKNS-HEEWF  238 (484)
Q Consensus       165 LiI~LkRF~~~----~~~Ki~~~V~fPe~LdL~~y~~~~~-~~~~~Y~L~aVVvH~G~~~~~~sGHYvayvk~~-~~~W~  238 (484)
                      |+|||+||.++    ...|+++.|.||+.|||.+|+.... .....|+|+|||+|.|.   +++|||+||+|+. +++||
T Consensus       195 L~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~---~~~GHY~~~~~~~~~~~W~  271 (347)
T d1nbfa_         195 LHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD---NHGGHYVVYLNPKGDGKWC  271 (347)
T ss_dssp             EEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEE---TTEEEEEEEECTTSSSCCE
T ss_pred             heEeeeeeeeccccCcccccCceEeeeeeeccccccccccccCccceeeEEEEEecCC---CCCCEEEEeeecCCCCEEE
Confidence            99999999864    3379999999999999999987654 34569999999999993   4699999999975 67999


Q ss_pred             EEcCCcceeeCcccccC---------------CCcEEEEEEecCCC
Q 039539          239 RIDDSTVIPVKLERVLS---------------EEAYMLLYARHSPR  269 (484)
Q Consensus       239 ~fnDs~V~~vs~~~v~s---------------~~AYmLfY~R~~~~  269 (484)
                      +|||+.|+++++++|+.               .+||||||+|++..
T Consensus       272 ~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~~  317 (347)
T d1nbfa_         272 KFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL  317 (347)
T ss_dssp             EEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGGH
T ss_pred             EEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCch
Confidence            99999999999999974               36999999999743
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure