Citrus Sinensis ID: 039546

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MATKSKSALSETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPSIERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRSFY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
matksksalsetpskaspatpraskvgkgvtkpetdshsplqnsrlsidrsprsinskpsierrspkvastppakvaitpsakaatppvkaatppeksqsrlVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKnqalshaddATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTfgkkingkrsfy
Flexible Loop (DISEMBL)
matksksalsetpskaspatpraskvgkgvtkpetdshsplqnsrlsidrsprsinskpsierrspkvastppakvaitpsakaatppvkaatppeksqsrlvKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKAlldsqretesiknrelvlkLEEEIDTLKeeleksrtfgkkingkrsfy
Low Complexity Region (SEG)
MATKSKSALSETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPSIERRSPKVASTPPAKVAItpsakaatppvkaatppekSQSRLVKGSELQAQLNLVQEDlkkakekieliekekVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIeasqkkeeewqkeieaVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVlkleeeidtlkeelekSRTFGKKINGKRSFY
Disordered region (IsUnstruct)
****************************************************************************************************************************************************************************************************************************************************IAELHVEKVEILSSELTRLK*************************************************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**************************************************************************KVAI*************************KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME****************EIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRSFY
Disordered Region (DISPRO)
******************************************************************************************************V*GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGK**FY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATKSKSALSETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPSIERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKFRAVEMEQAGxxxxxxxxxxxxxxxxxxxxxHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKxxxxxxxxxxxxxxxxxxxxxExxxxxxxxxxxxxxxxxxxxxxxxxxxxGKKINGKRSFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
F4JJP1	1221	WEB family protein At4g27	yes	no	0.907	0.232	0.555	1e-77
F4I8B9	1345	Putative WEB family prote	no	no	0.872	0.202	0.546	5e-77
Q9M8T5	806	WEB family protein At3g02	no	no	0.888	0.344	0.522	3e-59
Q9LFE4	853	WEB family protein At5g16	no	no	0.814	0.298	0.527	1e-58
Q9ZQC5	583	Interactor of constitutiv	no	no	0.546	0.293	0.316	1e-11
Q9SZB6	779	Protein WEAK CHLOROPLAST	no	no	0.795	0.319	0.303	3e-07
Q8VYU8	396	Interactor of constitutiv	no	no	0.313	0.247	0.344	3e-06

>sp|F4JJP1|Y4759_ARATH WEB family protein At4g27595, chloroplastic OS=Arabidopsis thaliana GN=At4g27595 PE=2 SV=1

 Score =  290 bits (741), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 166/299 (55%), Positives = 226/299 (75%), Gaps = 15/299 (5%)

Query: 1   MATKSKSALSETP-SKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKP 59
           MA+++K+ L ETP SK SP TPR SK    VTK + +S SP+Q++RLSIDRSP+++NSKP
Sbjct: 1   MASRTKTGLMETPRSKPSPPTPRVSK--PTVTKSDGNSPSPVQSTRLSIDRSPQTVNSKP 58

Query: 60  SIERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDL 119
             +RR+ +V + P A   +          +      +KSQSRL KG+ L  Q    QEDL
Sbjct: 59  VSDRRTARVPTPPEANYFL----------IIICMAFQKSQSRLGKGTGLLVQQ--TQEDL 106

Query: 120 KKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME 179
           +KA E+IE ++K+K +A+D+LKE++++ +EANEKL+EAL AQ  AE++SEIEKFRAVE+E
Sbjct: 107 RKANEQIERLKKDKAKALDDLKESEKLTKEANEKLREALAAQHHAEKSSEIEKFRAVELE 166

Query: 180 QAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHA 239
           QAGIEA  KKE  W+KE+E++R+QHALD+++LLSTT+EL RIKQELAMT DAKN+ALSHA
Sbjct: 167 QAGIEAVHKKEVSWKKEVESIRSQHALDISALLSTTEELHRIKQELAMTADAKNKALSHA 226

Query: 240 DDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEK 298
           ++ATKIAE   EK EILSSEL+RLKAL+ S  + +S ++ E+V KL+ EI+ L+ +LEK
Sbjct: 227 EEATKIAENQAEKAEILSSELSRLKALVGSDEQKKSNEDDEVVSKLKSEIEMLRGKLEK 285

Arabidopsis thaliana (taxid: 3702)

>sp|F4I8B9|Y1501_ARATH Putative WEB family protein At1g65010, chloroplastic OS=Arabidopsis thaliana GN=At1g65010 PE=1 SV=1

 Score =  287 bits (735), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 163/298 (54%), Positives = 223/298 (74%), Gaps = 25/298 (8%)

Query: 1   MATKSKSALSETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPS 60
           MA+++K+ L ETP       P         +K +++S SP+ N+RLS+DRSP ++NSKP+
Sbjct: 1   MASRTKTGLMETPRSKPSPPPPRLSKL-SASKSDSNSASPVPNTRLSLDRSPPTVNSKPT 59

Query: 61  IERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDLK 120
            +RR        P+++   P+             PEK  SRLVKG+ELQ QLN +QEDLK
Sbjct: 60  PDRR--------PSRI---PT-------------PEKVHSRLVKGTELQTQLNQIQEDLK 95

Query: 121 KAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180
           KA E+IEL++K+K +AID+LKE++++ EEANEKL+EAL AQKRAEE+ E+EKFRAVE+EQ
Sbjct: 96  KADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQ 155

Query: 181 AGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHAD 240
           AG+EA QKK+   + E+E++R+QHALD+++LLSTT+ELQR+K EL+MT DAKN+ALSHA+
Sbjct: 156 AGLEAVQKKDVTSKNELESIRSQHALDISALLSTTEELQRVKHELSMTADAKNKALSHAE 215

Query: 241 DATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEK 298
           +ATKIAE+H EK EIL+SEL RLKALL S+ E E+I+  E+V KL+ EI+ L+ ELEK
Sbjct: 216 EATKIAEIHAEKAEILASELGRLKALLGSKEEKEAIEGNEIVSKLKSEIELLRGELEK 273

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8T5|Y3293_ARATH WEB family protein At3g02930, chloroplastic OS=Arabidopsis thaliana GN=At3g02930 PE=2 SV=1

 Score =  229 bits (583), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 161/308 (52%), Positives = 206/308 (66%), Gaps = 30/308 (9%)

Query: 1   MATKSKSALSETPSKASPATP-RASKVGKGVTKPETDSHSPLQN-SRLSIDRSPRSINSK 58
           MA+K K+ LS+T  + S +T  R  ++ + VTKP+++S SP Q  SRLS +R P S NSK
Sbjct: 1   MASKIKNGLSDTTLRKSSSTSLRVPRLTRIVTKPDSNSPSPTQQQSRLSFER-PSS-NSK 58

Query: 59  PSIERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQED 118
           PS ++RSPK                       A TPPEK+Q R V+ SE Q Q   ++ED
Sbjct: 59  PSTDKRSPK-----------------------APTPPEKTQIRAVRVSESQPQSVQIKED 95

Query: 119 LKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEM 178
           LKKA E I  +E EK +A+D+LKEA++ AEEA+EKL EAL AQK++ EN EIEKF  VE 
Sbjct: 96  LKKANELIASLENEKAKALDQLKEARKEAEEASEKLDEALEAQKKSLENFEIEKFEVVE- 154

Query: 179 EQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSH 238
             AGIEA Q+KEEE +KE+E V+NQHA + A+LL  TQEL+ + QELA   DAK++AL  
Sbjct: 155 --AGIEAVQRKEEELKKELENVKNQHASESATLLLVTQELENVNQELANAKDAKSKALCR 212

Query: 239 ADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEK 298
           ADDA+K+A +H EKVEILSSEL RLKALLDS RE E I   E+ LKL  EI  LK +LE 
Sbjct: 213 ADDASKMAAIHAEKVEILSSELIRLKALLDSTREKEIISKNEIALKLGAEIVDLKRDLEN 272

Query: 299 SRTFGKKI 306
           +R+   K+
Sbjct: 273 ARSLEAKV 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFE4|Y5673_ARATH WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana GN=At5g16730 PE=1 SV=1

 Score =  226 bits (577), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 155/294 (52%), Positives = 203/294 (69%), Gaps = 39/294 (13%)

Query: 18  PATPRASKVGKGVTKPET-DSHSPLQ---NSRLSIDRSPRSINSKPSIERRSPKVASTPP 73
           PATPR +K  + V K ET +++SP     +SRLS+DRS  S NSK S+ERRSPK+     
Sbjct: 24  PATPRIAK--RTVNKSETSNNNSPSTTTPHSRLSLDRS--SPNSKSSVERRSPKLP---- 75

Query: 74  AKVAITPSAKAATPPVKAATPPEKSQSRL--VKGSE---LQAQLNLVQEDLKKAKEKIEL 128
                              TPPEKSQ+R+  VKG+E      +L+ ++EDLKKA E+I  
Sbjct: 76  -------------------TPPEKSQARVAAVKGTESPQTTTRLSQIKEDLKKANERISS 116

Query: 129 IEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQK 188
           +EK+K +A+DELK+A++ AE+   KL +AL AQK  EENSEIEKF+AVE   AGIEA Q 
Sbjct: 117 LEKDKAKALDELKQAKKEAEQVTLKLDDALKAQKHVEENSEIEKFQAVE---AGIEAVQN 173

Query: 189 KEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAEL 248
            EEE +KE+E V+NQHA D A+L++  QEL++I +ELA   DAK++ALS A+DA+K AE+
Sbjct: 174 NEEELKKELETVKNQHASDSAALVAVRQELEKINEELAAAFDAKSKALSQAEDASKTAEI 233

Query: 249 HVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTF 302
           H EKV+ILSSELTRLKALLDS RE  +I + E+V KLE+EI  LK +LE +R F
Sbjct: 234 HAEKVDILSSELTRLKALLDSTREKTAISDNEMVAKLEDEIVVLKRDLESARGF 287

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQC5|ICR2_ARATH Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 53/224 (23%)

Query: 11  ETPSKASPA-TPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPSIERRSPKVA 69
           E P K SPA TP+ ++      K +T    P+ +    I R+P++ + K   +RRSP+  
Sbjct: 12  EVPQKKSPASTPKTAR------KLKTSESDPVSSPNTKI-RTPKTQSPKVVADRRSPRT- 63

Query: 70  STPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELI 129
                             PV      E  + R  K  EL +Q++ +QE+LKKAKE++   
Sbjct: 64  ------------------PVN-----EIQKKRTGKTPELASQISQLQEELKKAKEQLSAS 100

Query: 130 EKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKK 189
           E  K       KEAQ  AEE  ++L E       A E+S I++ R +         SQ++
Sbjct: 101 EALK-------KEAQDQAEETKQQLMEI-----NASEDSRIDELRKL---------SQER 139

Query: 190 EEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKN 233
           ++ WQ E+EA++ QHA+D A+L ST  E+Q++K +L+ + + +N
Sbjct: 140 DKAWQSELEAMQRQHAMDSAALSSTMNEVQKLKAQLSESENVEN 183

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZB6|WEL1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana GN=WEL1 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 139/277 (50%), Gaps = 28/277 (10%)

Query: 12  TPSKASPAT----PRAS--KVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPSIERRS 65
           TPS  SP+     PR +     +G T+    S  PL + R SI  SPR++ S       S
Sbjct: 83  TPSFVSPSAEIVLPRVNTKYEAEGTTRNAV-SPRPLYSPR-SIG-SPRALLSPRFAGSSS 139

Query: 66  PKVASTPPAKVAITPSAKAATP--PVKAATPPEKSQSR--------LVKGSELQAQLNLV 115
           P    TP +  +   S   A+P   VK A       +         L + + ++ +L+ +
Sbjct: 140 PLSNGTPISMDSFRDSIDTASPFESVKEAVSKFGGITDWKAHRMKVLERRNFVEQELDKI 199

Query: 116 QEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRA 175
           QE++ + K+K E++E  K+ A++EL+  +R+ EE    L++A   +++A+++SE+ K R 
Sbjct: 200 QEEIPEYKKKSEMVEMSKMLAVEELESTKRLIEELKLNLEKAETEEQQAKQDSELAKLRV 259

Query: 176 VEMEQAGI--EASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKN 233
            EMEQ GI  EAS       + ++E  + +H   ++ L S  +ELQ ++ E       K+
Sbjct: 260 QEMEQ-GIADEASVAS----KAQLEVAQARHTSAISELESVKEELQTLQNEYDALVKEKD 314

Query: 234 QALSHADDATKIAELHVE-KVEILSSELTRLKALLDS 269
            A+  A++A  IA   VE KVE L+ EL   K  L+ 
Sbjct: 315 LAVKEAEEAV-IASKEVERKVEELTIELIATKESLEC 350

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYU8|ICR5_ARATH Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 21/119 (17%)

Query: 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEE 166
           EL++ ++ +QE+LKKAKE++   E  K       +EAQ  AE+A  +L +       A E
Sbjct: 75  ELESTISQLQEELKKAKEELNRSEALK-------REAQEEAEDAKHQLMDI-----NASE 122

Query: 167 NSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225
           +S IE+ R +         SQ++++ WQ E+EA++ QH +D  +L S   E+Q++K +L
Sbjct: 123 DSRIEELRKL---------SQERDKTWQSELEAMQRQHGMDSTALSSAINEVQKLKSKL 172

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
224124120	713	predicted protein [Populus trichocarpa]	0.932	0.409	0.698	1e-113
255558081	841	ATP binding protein, putative [Ricinus c	0.904	0.336	0.689	1e-111
359489869	846	PREDICTED: uncharacterized protein LOC10	0.884	0.327	0.710	1e-110
297737283	825	unnamed protein product [Vitis vinifera]	0.884	0.335	0.710	1e-110
356497411	859	PREDICTED: uncharacterized protein LOC10	0.923	0.336	0.635	1e-101
449460688	879	PREDICTED: WEB family protein At5g16730,	0.913	0.325	0.660	2e-97
356543309	850	PREDICTED: uncharacterized protein LOC10	0.923	0.34	0.641	2e-96
357481061	887	Interactor of constitutive active ROPs [	0.920	0.324	0.589	1e-94
356538654	851	PREDICTED: uncharacterized protein LOC10	0.923	0.339	0.644	3e-94
356538469	861	PREDICTED: uncharacterized protein LOC10	0.923	0.335	0.635	5e-93

>gi|224124120|ref|XP_002319250.1| predicted protein [Populus trichocarpa] gi|222857626|gb|EEE95173.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/302 (69%), Positives = 253/302 (83%), Gaps = 10/302 (3%)

Query: 11  ETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPSIERRSPKVAS 70
           ETPSK SPATPR SK+ +GV K E+DS SPLQ+SRLS+DRSPRSINSKP+I+RR+PKV S
Sbjct: 1   ETPSKPSPATPRVSKLSRGVAKSESDSPSPLQSSRLSVDRSPRSINSKPTIDRRAPKVTS 60

Query: 71  TPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIE 130
             P +V++         P          ++R+VKGSELQAQLN VQEDLKKA+E+IE IE
Sbjct: 61  ATPPEVSVNKCNNFFLKP----------KTRVVKGSELQAQLNAVQEDLKKAREQIEFIE 110

Query: 131 KEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKE 190
           KE+ QAIDELK+AQ+ AE+ANEKLQEAL+AQKRAEENSEIEKFRAVE+EQAGIE +QKKE
Sbjct: 111 KERAQAIDELKQAQKAAEDANEKLQEALVAQKRAEENSEIEKFRAVELEQAGIEDAQKKE 170

Query: 191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHV 250
           EEWQKE+EAVR+QHALDV +LLSTTQELQR+KQELAM TDAKNQALSHADDATKIAE+H 
Sbjct: 171 EEWQKELEAVRSQHALDVTALLSTTQELQRLKQELAMITDAKNQALSHADDATKIAEIHA 230

Query: 251 EKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKR 310
           EKVE+LSSELTRL  LLDS+ ETE+I++ ++VL+L EEID+LK++LEKS  F  K+  + 
Sbjct: 231 EKVEMLSSELTRLNVLLDSKLETEAIESNKIVLQLNEEIDSLKQQLEKSEDFEDKLIERE 290

Query: 311 SF 312
           +F
Sbjct: 291 AF 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558081|ref|XP_002520069.1| ATP binding protein, putative [Ricinus communis] gi|223540833|gb|EEF42393.1| ATP binding protein, putative [Ricinus communis]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/306 (68%), Positives = 254/306 (83%), Gaps = 23/306 (7%)

Query: 1   MATKSKSALSETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPS 60
           M++K+KS LSETPSKASPATPR SK+ +GV K E DS +P QNSRLS++RSPR+I  KP+
Sbjct: 1   MSSKTKSGLSETPSKASPATPRVSKLSRGVNKSEPDSPAPTQNSRLSVERSPRTITPKPT 60

Query: 61  IERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDLK 120
           ++RRSPKV                        TPPE+ Q R+VKGSELQAQL+ VQEDLK
Sbjct: 61  VDRRSPKVT-----------------------TPPERPQIRVVKGSELQAQLSGVQEDLK 97

Query: 121 KAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180
           KA+E++ L+EKEK QAIDELK+AQ+VA+EANEK QEAL+AQKRAEE+SEIEKFRAVE+EQ
Sbjct: 98  KAREQVALLEKEKAQAIDELKQAQKVADEANEKFQEALVAQKRAEEDSEIEKFRAVELEQ 157

Query: 181 AGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHAD 240
           AGIEA+QKKEEEWQKE+E+VRNQHA+DVASLLSTTQELQ++KQELAMTTDAKNQAL+HAD
Sbjct: 158 AGIEAAQKKEEEWQKELESVRNQHAVDVASLLSTTQELQKVKQELAMTTDAKNQALNHAD 217

Query: 241 DATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300
           DATKIAE+H +KVEILSSEL RLKALLDS+ ETE+ ++  +V +L EEIDTLK+ELEK+ 
Sbjct: 218 DATKIAEIHADKVEILSSELIRLKALLDSKLETEANESHRMVAELTEEIDTLKQELEKAN 277

Query: 301 TFGKKI 306
            F  K+
Sbjct: 278 GFEDKL 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489869|ref|XP_002270776.2| PREDICTED: uncharacterized protein LOC100249386 [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/301 (71%), Positives = 252/301 (83%), Gaps = 24/301 (7%)

Query: 1   MATKSKSALSETP-SKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKP 59
           MA+KSKS LS+TP SK SPATPR SK+G+GV K ETDS SPL N R+S+DRSPRS+ SKP
Sbjct: 1   MASKSKSTLSDTPNSKPSPATPRVSKLGRGVAKSETDSPSPLHNPRISVDRSPRSVASKP 60

Query: 60  SIERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDL 119
           +IERRSPKV+                       TPPEK QSR++KGSELQAQL+  QEDL
Sbjct: 61  TIERRSPKVS-----------------------TPPEKPQSRVLKGSELQAQLSHAQEDL 97

Query: 120 KKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME 179
           KKAKE++ + EKEKVQAIDELKEAQ+ AEEANEKL+EAL+AQKRAEENSEIEKFRAVEME
Sbjct: 98  KKAKEQLVIAEKEKVQAIDELKEAQKSAEEANEKLREALVAQKRAEENSEIEKFRAVEME 157

Query: 180 QAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHA 239
           QAGIEA+QKKE+EWQKE+E+VR+QHALDVA+LLS TQELQR+KQELAMT+DAKNQALSHA
Sbjct: 158 QAGIEAAQKKEDEWQKELESVRSQHALDVAALLSATQELQRMKQELAMTSDAKNQALSHA 217

Query: 240 DDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKS 299
           DDATKIAE+H EK EILS+ELTRLKALLDS+ ETE+ +N ++V  L  EID+LK+ELE++
Sbjct: 218 DDATKIAEIHAEKAEILSAELTRLKALLDSKNETEANENSKMVAALNSEIDSLKQELEEA 277

Query: 300 R 300
           +
Sbjct: 278 K 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737283|emb|CBI26484.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/301 (71%), Positives = 252/301 (83%), Gaps = 24/301 (7%)

Query: 1   MATKSKSALSETP-SKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKP 59
           MA+KSKS LS+TP SK SPATPR SK+G+GV K ETDS SPL N R+S+DRSPRS+ SKP
Sbjct: 1   MASKSKSTLSDTPNSKPSPATPRVSKLGRGVAKSETDSPSPLHNPRISVDRSPRSVASKP 60

Query: 60  SIERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDL 119
           +IERRSPKV+                       TPPEK QSR++KGSELQAQL+  QEDL
Sbjct: 61  TIERRSPKVS-----------------------TPPEKPQSRVLKGSELQAQLSHAQEDL 97

Query: 120 KKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME 179
           KKAKE++ + EKEKVQAIDELKEAQ+ AEEANEKL+EAL+AQKRAEENSEIEKFRAVEME
Sbjct: 98  KKAKEQLVIAEKEKVQAIDELKEAQKSAEEANEKLREALVAQKRAEENSEIEKFRAVEME 157

Query: 180 QAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHA 239
           QAGIEA+QKKE+EWQKE+E+VR+QHALDVA+LLS TQELQR+KQELAMT+DAKNQALSHA
Sbjct: 158 QAGIEAAQKKEDEWQKELESVRSQHALDVAALLSATQELQRMKQELAMTSDAKNQALSHA 217

Query: 240 DDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKS 299
           DDATKIAE+H EK EILS+ELTRLKALLDS+ ETE+ +N ++V  L  EID+LK+ELE++
Sbjct: 218 DDATKIAEIHAEKAEILSAELTRLKALLDSKNETEANENSKMVAALNSEIDSLKQELEEA 277

Query: 300 R 300
           +
Sbjct: 278 K 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497411|ref|XP_003517554.1| PREDICTED: uncharacterized protein LOC100795783 [Glycine max]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/329 (63%), Positives = 258/329 (78%), Gaps = 40/329 (12%)

Query: 1   MATKSKSALSETPSKA----------------SPATPRASKVGKGVTKPETDSHSPLQNS 44
           MA+KS+S+LSETP+KA                SPATPR S++ KGV+KPE++S SPLQN 
Sbjct: 1   MASKSRSSLSETPNKATPATPNKTRPSTPNKTSPATPRVSRLSKGVSKPESESPSPLQNL 60

Query: 45  RLSIDRS-PRSINSKPSIERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLV 103
           RLS ++S PR++NSKP+ ER+SP+            P++ AA          +K   R+ 
Sbjct: 61  RLSAEKSSPRALNSKPATERKSPR------------PTSTAA----------DKQLPRVA 98

Query: 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKR 163
           KGSELQAQLNL QEDLKKAKE++   EKEK +AIDELKEAQRVAEEANEKL+EA++AQKR
Sbjct: 99  KGSELQAQLNLAQEDLKKAKEQLIQAEKEKEKAIDELKEAQRVAEEANEKLREAMVAQKR 158

Query: 164 AEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQ 223
           AEE+SEIEKFRAVE+EQAGIEA  KKEEEWQKE+E+VRNQHALDV++LLSTTQELQ+IKQ
Sbjct: 159 AEESSEIEKFRAVELEQAGIEAVHKKEEEWQKELESVRNQHALDVSALLSTTQELQQIKQ 218

Query: 224 ELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVL 283
           ELAMT DAKNQALSHADDATKIAELHVEK EILS+EL RLKA+LDS+ ETE+ +N+ +VL
Sbjct: 219 ELAMTCDAKNQALSHADDATKIAELHVEKAEILSAELIRLKAVLDSKLETEANENK-VVL 277

Query: 284 KLEEEIDTLKEELEKSRTFGKKINGKRSF 312
           +L+ EI+ LKEELEK++ +  K+  K ++
Sbjct: 278 ELQAEIEALKEELEKAQCYDAKLAEKENY 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460688|ref|XP_004148077.1| PREDICTED: WEB family protein At5g16730, chloroplastic-like [Cucumis sativus] gi|449531197|ref|XP_004172574.1| PREDICTED: WEB family protein At5g16730, chloroplastic-like [Cucumis sativus]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 204/309 (66%), Positives = 250/309 (80%), Gaps = 23/309 (7%)

Query: 1   MATKSKSALSETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPS 60
           M+TKSKS+  ETP+K SPATPR SK+ +G+ K E+DSHSPLQ SRLSIDRSPR   SKP+
Sbjct: 1   MSTKSKSSTPETPNKTSPATPRVSKLNRGIAKSESDSHSPLQRSRLSIDRSPRPATSKPA 60

Query: 61  IERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDLK 120
           ++R+ PKV                       ATPP+K+Q R  KGSE+QAQLN+ QEDLK
Sbjct: 61  VDRQLPKV-----------------------ATPPDKAQPRSTKGSEIQAQLNVAQEDLK 97

Query: 121 KAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180
           KAKE+I L+EKE+ +  +ELKEAQ+ AEEANEKL+EAL+AQKRAEE+SEIEKFRAVEMEQ
Sbjct: 98  KAKEQIVLVEKEREKLSNELKEAQKSAEEANEKLREALVAQKRAEESSEIEKFRAVEMEQ 157

Query: 181 AGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHAD 240
           AG+E + KKEEEW+KEIEAVR+QHALDVA+LLST+QELQR+K ELAMTTDAKNQALSHAD
Sbjct: 158 AGLEEAHKKEEEWEKEIEAVRSQHALDVAALLSTSQELQRVKMELAMTTDAKNQALSHAD 217

Query: 241 DATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300
           DATKIAE+HVEKVEILS ELTRLKALLDS+ E +S +N +L++KL+ EID+L  ELEK++
Sbjct: 218 DATKIAEIHVEKVEILSGELTRLKALLDSKLEMQSNENGQLIMKLKSEIDSLNLELEKAK 277

Query: 301 TFGKKINGK 309
           ++ + +  K
Sbjct: 278 SYAEMVKEK 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543309|ref|XP_003540104.1| PREDICTED: uncharacterized protein LOC100777446 [Glycine max]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/312 (64%), Positives = 246/312 (78%), Gaps = 23/312 (7%)

Query: 1   MATKSKSALSETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPS 60
           M +KS+  LSE  +K S ATPRASK  K V+K E++S SPLQNSRLS++RSPRS+NSKP+
Sbjct: 1   MTSKSRPNLSENSNKGSMATPRASKASKVVSKSESESPSPLQNSRLSVERSPRSVNSKPA 60

Query: 61  IERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDLK 120
           +ER+SP+ ++TP  K                  PP     R  KGS+LQ QLNL QEDLK
Sbjct: 61  VERKSPRPSATPLDK-----------------QPP-----RAAKGSDLQNQLNLAQEDLK 98

Query: 121 KAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180
           KAKE +   EKEK++AID+LKEAQRVAEEANEKL+EAL+AQK AEENSEIEKFRAVE+EQ
Sbjct: 99  KAKELLIQAEKEKLKAIDDLKEAQRVAEEANEKLREALVAQKLAEENSEIEKFRAVELEQ 158

Query: 181 AGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHAD 240
           AGIE  + KEEEWQKEIE+VRNQHALD+A+LLSTTQELQ++KQELAMT DAKNQAL+HAD
Sbjct: 159 AGIETVKTKEEEWQKEIESVRNQHALDMAALLSTTQELQQVKQELAMTCDAKNQALNHAD 218

Query: 241 DATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300
           DATKIAE+H EK E LS+EL RLKALLDS+ ETE+ +N+ ++ KL+ EI+ LKEELEK++
Sbjct: 219 DATKIAEIHAEKAEFLSAELMRLKALLDSKLETEASENQ-VIFKLKTEIEALKEELEKAK 277

Query: 301 TFGKKINGKRSF 312
            +  K++ K +F
Sbjct: 278 DYDDKLSEKETF 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481061|ref|XP_003610816.1| Interactor of constitutive active ROPs [Medicago truncatula] gi|355512151|gb|AES93774.1| Interactor of constitutive active ROPs [Medicago truncatula]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 201/341 (58%), Positives = 250/341 (73%), Gaps = 53/341 (15%)

Query: 1   MATKSKSALSE---------------------------TPSKASPATPRASKVGKGVTKP 33
           MA+KS+S LSE                           TP+K SPATPR SK+G+GV+KP
Sbjct: 1   MASKSRSGLSETLPNKASSPATPNKATPASTLSKVPPATPNKTSPATPRVSKLGRGVSKP 60

Query: 34  ETDSHSPLQNSRLSIDR-SPRSINSKPSIERRSPKVASTPPAKVAITPSAKAATPPVKAA 92
           E++S SPLQ SRLS ++ SPRS+NSKP  ER+SP+            P+           
Sbjct: 61  ESESPSPLQTSRLSAEKASPRSLNSKPIAERKSPR------------PT----------- 97

Query: 93  TPPEKSQSRLV-KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEAN 151
           TP +K   R V K SELQ QLN+ QEDLKKAKE++   EKEK +AI+ELKEAQR++EEAN
Sbjct: 98  TPADKHTPRAVAKSSELQTQLNVAQEDLKKAKEQLIQAEKEKEKAINELKEAQRLSEEAN 157

Query: 152 EKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASL 211
           EKL+EA++AQKRAE++SEIEKFRAVE+EQAGIEA+QKKEEEWQ+E+E+VRNQHALDV++L
Sbjct: 158 EKLREAMVAQKRAEDDSEIEKFRAVELEQAGIEAAQKKEEEWQRELESVRNQHALDVSAL 217

Query: 212 LSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR 271
           L+TT ELQR+KQEL MT DAKNQALSHADDATKIAELHVEKVEILS+EL RLK LLDS+ 
Sbjct: 218 LATTNELQRVKQELVMTCDAKNQALSHADDATKIAELHVEKVEILSAELIRLKGLLDSKL 277

Query: 272 ETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRSF 312
           ETE+ +N   VL+L+ EI+ LK ELEK++ + +K+  K + 
Sbjct: 278 ETEASENN-TVLELQTEIEALKHELEKAKGYDEKLAEKETL 317

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538654|ref|XP_003537816.1| PREDICTED: uncharacterized protein LOC100808226 [Glycine max]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 201/312 (64%), Positives = 249/312 (79%), Gaps = 23/312 (7%)

Query: 1   MATKSKSALSETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPS 60
           MA+KS+  LSE  +K S ATPR SK  K  +KPE++S SPLQNSRLS++RSPRS+NSKP+
Sbjct: 1   MASKSRPNLSENSNKGSIATPRVSKTSKLASKPESESPSPLQNSRLSVERSPRSVNSKPT 60

Query: 61  IERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLVKGSELQAQLNLVQEDLK 120
           +ER+SP+ ++TPP K           PP            R  KGSELQ QLNL Q+DLK
Sbjct: 61  VERKSPRPSATPPDK----------QPP------------RAAKGSELQNQLNLAQQDLK 98

Query: 121 KAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ 180
           KAKE++   E EK++A+D+LKEAQRVAEEANEKL+EAL+AQKRAEENSEIEKFRAVE+EQ
Sbjct: 99  KAKEQLIQAENEKLKAVDDLKEAQRVAEEANEKLREALVAQKRAEENSEIEKFRAVELEQ 158

Query: 181 AGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHAD 240
           AGIE  +KKEEEWQKEIE+VRNQ+ALD+ SLLSTTQELQR+KQELAMT DAKNQAL+HAD
Sbjct: 159 AGIETVKKKEEEWQKEIESVRNQYALDMDSLLSTTQELQRVKQELAMTCDAKNQALNHAD 218

Query: 241 DATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR 300
           DATKIAE+H EK E LS+EL RLKALLDS+ ETE+ +N+ ++LKL+ +I+ LKEELEK++
Sbjct: 219 DATKIAEIHAEKAEFLSAELVRLKALLDSKVETEARENQ-VILKLKTDIEALKEELEKAK 277

Query: 301 TFGKKINGKRSF 312
            +  K++ + SF
Sbjct: 278 GYDDKLSERESF 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538469|ref|XP_003537726.1| PREDICTED: uncharacterized protein LOC100803802 [Glycine max]

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 209/329 (63%), Positives = 254/329 (77%), Gaps = 40/329 (12%)

Query: 1   MATKSKSALSETPSKA----------------SPATPRASKVGKGVTKPETDSHSPLQNS 44
           MA+KS+S+LSETP+KA                SPATP+ S++ KGV+KPE++S SPLQN 
Sbjct: 1   MASKSRSSLSETPNKATPATPNKARPSTPNKTSPATPKVSRLSKGVSKPESESPSPLQNL 60

Query: 45  RLSIDR-SPRSINSKPSIERRSPKVASTPPAKVAITPSAKAATPPVKAATPPEKSQSRLV 103
           RLS ++ SPR++NSKP+ ER+SP+  S                      T P+K   R+ 
Sbjct: 61  RLSSEKSSPRALNSKPATERKSPRPTS----------------------TTPDKQIPRVA 98

Query: 104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKR 163
           KGSELQAQLNL QEDLKKAKE++   EKEK +AI ELKEAQRVAEEANEKL EA++AQKR
Sbjct: 99  KGSELQAQLNLAQEDLKKAKEQLVQAEKEKEKAIGELKEAQRVAEEANEKLSEAIVAQKR 158

Query: 164 AEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQ 223
           AEE+SEIEKFRAVE+EQAGIEA+QKKEEEWQ+E+E+VRNQHALDV++LLSTTQELQRIKQ
Sbjct: 159 AEESSEIEKFRAVELEQAGIEAAQKKEEEWQEELESVRNQHALDVSALLSTTQELQRIKQ 218

Query: 224 ELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVL 283
           ELAMT DAKNQALSHADDATKIAELHVEK EILS EL RLKA+LDS+ ETE+I N  +VL
Sbjct: 219 ELAMTCDAKNQALSHADDATKIAELHVEKAEILSVELIRLKAVLDSKLETEAIANN-IVL 277

Query: 284 KLEEEIDTLKEELEKSRTFGKKINGKRSF 312
           +L+ EI+ LKEELEK++ +  K+  K ++
Sbjct: 278 ELQAEIEALKEELEKAKGYDAKLAEKENY 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:504955294	1221	AT4G27595 "AT4G27595" [Arabido	0.856	0.219	0.494	3.9e-57
TAIR|locus:2010826	1345	AT1G65010 [Arabidopsis thalian	0.584	0.136	0.579	8.7e-49
TAIR|locus:2075402	806	AT3G02930 "AT3G02930" [Arabido	0.578	0.224	0.494	7.8e-35
TAIR|locus:2119206	779	AT4G33390 "AT4G33390" [Arabido	0.501	0.201	0.283	2.3e-08
UNIPROTKB|Q8VXD2	601	p70 "P70 protein" [Nicotiana t	0.559	0.291	0.255	3.4e-07
TAIR|locus:2066301	807	WEB1 "WEAK CHLOROPLAST MOVEMEN	0.504	0.195	0.257	1.1e-06
TAIR|locus:2825751	752	AT1G45545 "AT1G45545" [Arabido	0.712	0.296	0.236	8.9e-06
TAIR|locus:2061758	583	RIP2 "ROP interactive partner	0.402	0.216	0.248	2.7e-05
TAIR|locus:2176625	649	AT5G55860 "AT5G55860" [Arabido	0.504	0.243	0.220	7.9e-05

TAIR|locus:504955294 AT4G27595 "AT4G27595" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.9e-57, P = 3.9e-57
 Identities = 140/283 (49%), Positives = 186/283 (65%)

Query:     1 MATKSKSALSETP-SKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKP 59
             MA+++K+ L ETP SK SP TPR SK    VTK + +S SP+Q++RLSIDRSP+++NSKP
Sbjct:     1 MASRTKTGLMETPRSKPSPPTPRVSK--PTVTKSDGNSPSPVQSTRLSIDRSPQTVNSKP 58

Query:    60 SIERRSPKVASTPPAKVAIXXXXXXXXXXXXXXXXXXXSQSRLVKGSELQAQLNLVQEDX 119
               +RR+ +V + P A   +                   SQSRL KG+ L  Q    QED 
Sbjct:    59 VSDRRTARVPTPPEANYFLIIICMAFQK----------SQSRLGKGTGLLVQQT--QEDL 106

Query:   120 XXXXXXXXXXXXXXVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME 179
                            +A+D+LKE++++ +EANEKL+EAL AQ  AE++SEIEKFRAVE+E
Sbjct:   107 RKANEQIERLKKDKAKALDDLKESEKLTKEANEKLREALAAQHHAEKSSEIEKFRAVELE 166

Query:   180 QAGIXXXXXXXXXXXXXXXXVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHA 239
             QAGI                +R+QHALD+++LLSTT+EL RIKQELAMT DAKN+ALSHA
Sbjct:   167 QAGIEAVHKKEVSWKKEVESIRSQHALDISALLSTTEELHRIKQELAMTADAKNKALSHA 226

Query:   240 DDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELV 282
             ++ATKIAE   EK EILSSEL+RLKAL+ S  + +S ++ E+V
Sbjct:   227 EEATKIAENQAEKAEILSSELSRLKALVGSDEQKKSNEDDEVV 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010826 AT1G65010 [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 8.7e-49, P = 8.7e-49
 Identities = 106/183 (57%), Positives = 136/183 (74%)

Query:   100 SRLVKGSELQAQLNLVQEDXXXXXXXXXXXXXXXVQAIDELKEAQRVAEEANEKLQEALM 159
             SRLVKG+ELQ QLN +QED                +AID+LKE++++ EEANEKL+EAL 
Sbjct:    75 SRLVKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALA 134

Query:   160 AQKRAEENSEIEKFRAVEMEQAGIXXXXXXXXXXXXXXXXVRNQHALDVASLLSTTQELQ 219
             AQKRAEE+ E+EKFRAVE+EQAG+                +R+QHALD+++LLSTT+ELQ
Sbjct:   135 AQKRAEESFEVEKFRAVELEQAGLEAVQKKDVTSKNELESIRSQHALDISALLSTTEELQ 194

Query:   220 RIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNR 279
             R+K EL+MT DAKN+ALSHA++ATKIAE+H EK EIL+SEL RLKALL S+ E E+I+  
Sbjct:   195 RVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKALLGSKEEKEAIEGN 254

Query:   280 ELV 282
             E+V
Sbjct:   255 EIV 257

GO:0005634 "nucleus" evidence=ISM

GO:0009908 "flower development" evidence=IMP

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2075402 AT3G02930 "AT3G02930" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 7.8e-35, P = 7.8e-35
 Identities = 91/184 (49%), Positives = 114/184 (61%)

Query:    98 SQSRLVKGSELQAQLNLVQEDXXXXXXXXXXXXXXXVQAIDELKEAQRVAEEANEKLQEA 157
             +Q R V+ SE Q Q   ++ED                +A+D+LKEA++ AEEA+EKL EA
Sbjct:    75 TQIRAVRVSESQPQSVQIKEDLKKANELIASLENEKAKALDQLKEARKEAEEASEKLDEA 134

Query:   158 LMAQKRAEENSEIEKFRAVEMEQAGIXXXXXXXXXXXXXXXXVRNQHALDVASLLSTTQE 217
             L AQK++ EN EIEKF  VE   AGI                V+NQHA + A+LL  TQE
Sbjct:   135 LEAQKKSLENFEIEKFEVVE---AGIEAVQRKEEELKKELENVKNQHASESATLLLVTQE 191

Query:   218 LQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIK 277
             L+ + QELA   DAK++AL  ADDA+K+A +H EKVEILSSEL RLKALLDS RE E I 
Sbjct:   192 LENVNQELANAKDAKSKALCRADDASKMAAIHAEKVEILSSELIRLKALLDSTREKEIIS 251

Query:   278 NREL 281
               E+
Sbjct:   252 KNEI 255

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2119206 AT4G33390 "AT4G33390" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 46/162 (28%), Positives = 78/162 (48%)

Query:   108 LQAQLNLVQEDXXXXXXXXXXXXXXXVQAIDELKEAQRVAEEANEKLQEALMAQKRAEEN 167
             ++ +L+ +QE+               + A++EL+  +R+ EE    L++A   +++A+++
Sbjct:   192 VEQELDKIQEEIPEYKKKSEMVEMSKMLAVEELESTKRLIEELKLNLEKAETEEQQAKQD 251

Query:   168 SEIEKFRAVEMEQAGIXXXXXXXXXXXXXXXXVRNQHALDVASLLSTTQELQRIKQELAM 227
             SE+ K R  EMEQ GI                 R  H   ++ L S  +ELQ ++ E   
Sbjct:   252 SELAKLRVQEMEQ-GIADEASVASKAQLEVAQAR--HTSAISELESVKEELQTLQNEYDA 308

Query:   228 TTDAKNQALSHADDATKIAELHVE-KVEILSSELTRLKALLD 268
                 K+ A+  A++A  IA   VE KVE L+ EL   K  L+
Sbjct:   309 LVKEKDLAVKEAEEAV-IASKEVERKVEELTIELIATKESLE 349

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

UNIPROTKB|Q8VXD2 p70 "P70 protein" [Nicotiana tabacum (taxid:4097)]

 Score = 143 (55.4 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 47/184 (25%), Positives = 88/184 (47%)

Query:    99 QSRLVKGSELQAQLNLVQEDXXXXXXXXXXXXXXXVQAIDELKEAQRVAEEANEKLQEAL 158
             + R  K S+L+AQL  +QE+                +A  +  EA++     +EKL+++ 
Sbjct:    68 KKRPSKVSDLEAQLAQLQEELKKAKDQLNSSESLKKRAQQDADEAKKQLAVMSEKLEDS- 126

Query:   159 MAQKRAEENSEIEKFRAVEMEQAGIXXXXXXXXXXXXXXXXVRNQHALDVASLLSTTQEL 218
               +K+  E S+ E+ R +E+ +                   ++ QH LD A+L S   E+
Sbjct:   127 --KKQLLELSDSEEARLLELRKIS----QDRDRAWESELEAIQKQHELDSAALASALNEI 180

Query:   219 QRIKQELAMTTDAKNQALSHADDA-TKIAELHVEKVEILSSELTRLKALLDSQRETESIK 277
             Q++K +L    D++     HA+ A  +I  L VE +E L+  + +L+  L+  +E+E+  
Sbjct:   181 QKLKIQLDRVADSEATQAHHAESAHAEIQSLRVELMETLTL-VEKLRNQLNDSKESEACS 239

Query:   278 NREL 281
               E+
Sbjct:   240 LEEV 243

GO:0051219 "phosphoprotein binding" evidence=IPI

TAIR|locus:2066301 WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 42/163 (25%), Positives = 73/163 (44%)

Query:   108 LQAQLNLVQEDXXXXXXXXXXXXXXXVQAIDELKEAQRVAEEANEKLQEALMAQKRAEEN 167
             ++ +L  + E+               +Q + EL+  +R+ E+    L +A   +++A+++
Sbjct:   201 IEEELKKIHEEIPEYKTHSETAEAAKLQVLKELESTKRLIEQLKLNLDKAQTEEQQAKQD 260

Query:   168 SEIEKFRAVEMEQAGIXXXXXXXXXXXXXXXXVRNQHALDVASLLSTTQELQRIKQELAM 227
             SE+ K R  EMEQ GI                 R  H   +  L S  +EL+ + +E   
Sbjct:   261 SELAKLRVEEMEQ-GIAEDVSVAAKAQLEVAKAR--HTTAITELSSVKEELETLHKEYDA 317

Query:   228 TTDAKNQALSHADDATKIAELHVEK-VEILSSELTRLKALLDS 269
                 K+ A+   ++A  +A   VEK VE L+ EL   K  L+S
Sbjct:   318 LVQDKDVAVKKVEEAM-LASKEVEKTVEELTIELIATKESLES 359

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009903 "chloroplast avoidance movement" evidence=IMP

GO:0009904 "chloroplast accumulation movement" evidence=IMP

TAIR|locus:2825751 AT1G45545 "AT1G45545" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 56/237 (23%), Positives = 99/237 (41%)

Query:    44 SRLSIDRSPRS-INSKPSIERRSPK-VASTPPAKVAIXXXXXXXXXXXXXXXXXXXSQSR 101
             SRL +  SPR+ ++ + S    SP+ V+ T P  +                      ++ 
Sbjct:   124 SRLKVPGSPRAFVHPRSS---GSPRFVSPTSPVLIDTAAPFESVKEAVSKFGGITDWKAH 180

Query:   102 LVKGSE----LQAQLNLVQEDXXXXXXXXXXXXXXXVQAIDELKEAQRVAEEANEKLQEA 157
              ++  E    +  +L  +QED                Q + EL+  + V EE   +L++A
Sbjct:   181 KIQTIERRKTVDQELEKIQEDMPDYKKQAVVAEEAKHQVVMELERTRNVVEELKLELEKA 240

Query:   158 LMAQKRAEENSEIEKFRAVEMEQAGIXXXXXXXXXXXXXXXXVRNQHALDVASLLSTTQE 217
                +++A+++S++ K R  EMEQ GI                 R  H   V+ L +  +E
Sbjct:   241 EKEEQQAKQDSDLAKLRVEEMEQ-GIAGEVSVAAKSQLEVAKAR--HLSAVSELGTIREE 297

Query:   218 LQRIKQELAMTTDAKNQALSHADDATKIAELHVEK-VEILSSELTRLKALLDSQRET 273
             ++ +  E       K+ A   A+D+   A+  VEK +E L+ E+   K LL+    T
Sbjct:   298 IEMVSNEYESLLTEKDLAAKKAEDSVLKAK-DVEKQMEGLTMEVIATKQLLELAHAT 353

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2061758 RIP2 "ROP interactive partner 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 35/141 (24%), Positives = 66/141 (46%)

Query:   141 KEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIXXXXXXXXXXXXXXXXV 200
             KEAQ  AEE  ++L E       A E+S I++ R +  E+                   +
Sbjct:   105 KEAQDQAEETKQQLMEI-----NASEDSRIDELRKLSQER---------DKAWQSELEAM 150

Query:   201 RNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSEL 260
             + QHA+D A+L ST  E+Q++K +L+ + + +N  +   +  + + +L  E  +    E 
Sbjct:   151 QRQHAMDSAALSSTMNEVQKLKAQLSESENVENLRMELNETLSLVEKLRGELFDAKEGEA 210

Query:   261 TRLKALLDSQRETESIKNREL 281
                + +  ++++ E I N  L
Sbjct:   211 QAHEIVSGTEKQLE-IANLTL 230

GO:0009507 "chloroplast" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2176625 AT5G55860 "AT5G55860" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 7.9e-05, P = 7.9e-05
 Identities = 36/163 (22%), Positives = 69/163 (42%)

Query:   109 QAQLNLVQEDXXXXXXXXXXXXXXXVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENS 168
             Q +L+L Q++                QA+ EL+ ++R  +E   KL+    ++  A + +
Sbjct:    65 QTELHLAQKELNKLKEQLKNAETIREQALSELEWSKRTVDELTRKLEAVNESRDSANKAT 124

Query:   169 EIEKFRAVEMEQAGIXXXXXXXXXXXXXXXXVRNQHALDVASLLSTTQELQRIKQELAMT 228
             E  K    E +   +                      LD A      QEL++I+Q     
Sbjct:   125 EAAKSLIEEAKPGNVSVASSSDAQTRDMEEYGEVCKELDTAK-----QELRKIRQVSNEI 179

Query:   229 TDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR 271
              + K  ALS  ++A K++++H EK+E+L  E+  +   ++  +
Sbjct:   180 LETKTVALSKVEEAKKVSKVHSEKIELLRKEIAAVNESVEQTK 222


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.305   0.120   0.299    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      313       247   0.00078  114 3  10 23  0.42    34
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  542 (58 KB)
  Total size of DFA:  178 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.98u 0.13s 35.11t   Elapsed:  00:00:02
  Total cpu time:  34.98u 0.13s 35.11t   Elapsed:  00:00:02
  Start:  Sat May 11 06:27:24 2013   End:  Sat May 11 06:27:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIII.2607.1 hypothetical protein (713 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	3e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-06
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	9e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	0.003

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 14/211 (6%)

Query: 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEE 166
           EL+ +L   +E L+ A  K +  E++ VQA  EL+E +R   EA   L++A +  +R + 
Sbjct: 604 ELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQN 663

Query: 167 NSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226
             +  K    ++E A  E  Q+ E + ++ ++A   Q      + L   + L+   +EL 
Sbjct: 664 EQQSLK---DKLELAIAERKQQAETQLRQ-LDAQLKQLLEQQQAFL---EALKDDFRELR 716

Query: 227 MTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNR----ELV 282
               AK Q +    D  ++A+L        +    RLK  L  Q + E + +       V
Sbjct: 717 TERLAKWQVVEGELDN-QLAQLSAAIEAARTQAKARLKE-LKKQYDRE-LASLDVDPNTV 773

Query: 283 LKLEEEIDTLKEELEKSRTFGKKINGKRSFY 313
            +L+ +I+ L+  +E+      ++   R+F 
Sbjct: 774 KELKRQIEELETTIERIAVRRPEVREYRAFM 804

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 49/197 (24%), Positives = 99/197 (50%), Gaps = 4/197 (2%)

Query: 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165
            EL+ +L  ++E+L++ + ++E +E+E  +  +EL+E Q   EE  E+L+     +  A+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL--EEALAK 776

Query: 166 ENSEIEKFRAV-EMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQE 224
              EIE+     +  Q  +E  +++ EE ++ ++A+  +            QE++ +++E
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 225 LAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLK 284
           +    +  ++     ++  K  E   E++E L +E   L+  L    E +     EL  +
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR-E 895

Query: 285 LEEEIDTLKEELEKSRT 301
           LE E+  LKEE+EK R 
Sbjct: 896 LESELAELKEEIEKLRE 912

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 44/202 (21%), Positives = 94/202 (46%), Gaps = 9/202 (4%)

Query: 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEE 166
           EL  Q++ +++DL + + ++E +E+   Q   EL E +   EE  E+L+EA      AE 
Sbjct: 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782

Query: 167 NSEIEKFRAVEMEQA------GIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQR 220
             E  + +  ++++        ++  + +     +E   +R +       + +T + L+ 
Sbjct: 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

Query: 221 IKQELA-MTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNR 279
           +++++  ++ D ++ A    +    I EL   ++E L +E   L+  L   R      + 
Sbjct: 843 LEEQIEELSEDIESLAAEIEELEELIEELE-SELEALLNERASLEEALALLRSELEELSE 901

Query: 280 ELVLKLEEEIDTLKEELEKSRT 301
           EL  +LE +   L+ ELE+ R 
Sbjct: 902 EL-RELESKRSELRRELEELRE 922

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 48/218 (22%), Positives = 93/218 (42%), Gaps = 11/218 (5%)

Query: 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165
            EL+ +L+ ++E+L++ +E++E  EKE  +   EL+E +   EE  E+L E     +  E
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301

Query: 166 ENSEI------EKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQ---HALDVASLLSTTQ 216
               +      E    +E  +  +E  ++K E  ++E+E            +A L    +
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361

Query: 217 ELQRIKQELAMTTDAKNQAL-SHADDATKIAELHVEKVEILSSELTRLKALLDSQRETES 275
           EL+     L    +   +AL     +          ++E L  E+  L+  L+   E   
Sbjct: 362 ELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLE 421

Query: 276 IKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRSFY 313
               EL  +LE E++ L+ ELE+     +++  +    
Sbjct: 422 DLKEEL-KELEAELEELQTELEELNEELEELEEQLEEL 458

Length = 1163

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 14/198 (7%)

Query: 96  EKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQ 155
                R  +    + +L L QE+  K K+++E+ EKEK+Q + EL+  +R  E+   KL+
Sbjct: 22  AHLPQRSERVLVKETELMLAQEEANKLKKELEVAEKEKLQVLKELESTKRTVEDLKLKLE 81

Query: 156 EALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTT 215
           +A   +++A+++SE+ K RA E+EQ   E   +              ++    A L S  
Sbjct: 82  KAEKEEQQAKQDSELAKLRAEELEQGIQELEVE--------------RYITATAELDSVK 127

Query: 216 QELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETES 275
           +EL++I+QE     + ++ AL  A++A   ++++ +KVE L+ E+  +K  L+       
Sbjct: 128 EELRKIRQEYDALVEERDAALKRAEEAICASKVNEKKVEELTKEIIAMKESLERAHAAHL 187

Query: 276 IKNRELVLKLEEEIDTLK 293
               E +    E+    +
Sbjct: 188 EAEEERIGAALEKDQDRE 205

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 18/212 (8%)

Query: 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQA---IDELKEAQRVAEEANEKLQEALMAQKR 163
           EL+ +L  +QE+L + KE+IE +E E       ++EL+      EE  E+L+E + A K 
Sbjct: 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 164 AEEN-----SEIEKFRAVEMEQAG---------IEASQKKEEEWQKEIEAVRNQHALDVA 209
             E       E+E+  A   E            +E  ++  E  ++E+  +  + A    
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397

Query: 210 SLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDS 269
            L    +E++ +++ L   ++          +     E    ++E L+ EL  L+  L+ 
Sbjct: 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEE 457

Query: 270 QRETESIKNRELVLKLEEEIDTLKEELEKSRT 301
            R+      REL  +L+EE+  L++EL     
Sbjct: 458 LRDRLKELERELA-ELQEELQRLEKELSSLEA 488

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 26/231 (11%)

Query: 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE- 165
           EL+ ++  ++E + + ++ +  + KE  +  +EL++ ++  EE + ++        R E 
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 166 --------------ENSEIEKFRAVEMEQAGIEASQKKE-----EEWQKEIEAVRNQHAL 206
                         E +E+E       E+      +  E     EE + +IE ++ +   
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800

Query: 207 DVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKAL 266
              +L     EL  + +E A   +             +  E   E++E LS ++  L A 
Sbjct: 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860

Query: 267 LDSQRETESIKNRELVLKL------EEEIDTLKEELEKSRTFGKKINGKRS 311
           ++   E       EL   L      EE +  L+ ELE+     +++  KRS
Sbjct: 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 43/210 (20%), Positives = 94/210 (44%), Gaps = 17/210 (8%)

Query: 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165
            ELQ +L   +E+L++   +++ +E++  +   E+ E +   EE  ++L        R E
Sbjct: 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301

Query: 166 ENSEIEKFRA------VEMEQAGIEASQKKEEEWQKEIEAVRNQHAL---DVASLLSTTQ 216
           +  +I + R       +E  +A +E  + K +E  +E+  +  +      ++ SL +  +
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361

Query: 217 ELQRIKQELAMTTDAKNQAL----SHADDATKIAELHVEKVEILSSELTRLKALLDSQRE 272
           EL+   +EL    +   + L    S              ++E L + L RL+   +  ++
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421

Query: 273 TESIKNRELVL----KLEEEIDTLKEELEK 298
                 ++L      +L+ E++ L+EELE+
Sbjct: 422 EIEELLKKLEEAELKELQAELEELEEELEE 451

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 13/216 (6%)

Query: 98  SQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA 157
           S ++  +  EL+ +L  ++  L+K +E+++ ++ E     D L+E +R  EE   +L+E 
Sbjct: 662 SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEEL 721

Query: 158 LMAQKRAEENSEI--EKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTT 215
                  EE  E    +   +E E   +E   ++ +E  +E+E         +A L    
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 216 QELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETES 275
           +EL+  +Q L    +   + L  A+      E  +E +E     L         ++E E 
Sbjct: 782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERL---------EQEIEE 832

Query: 276 IKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRS 311
           ++    + +LEE++D L+EELE+     +++  +  
Sbjct: 833 LEEE--IEELEEKLDELEEELEELEKELEELKEELE 866

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 40/193 (20%), Positives = 85/193 (44%), Gaps = 9/193 (4%)

Query: 105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRA 164
           GS  +      + +LK+ +E++  +E +  +  +ELK  +       + L+E     +  
Sbjct: 655 GSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL 714

Query: 165 EENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQE 224
           E        R +E  +  + A +++ E+ Q  +E +  +       L    + L+ +++E
Sbjct: 715 E--------RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE 766

Query: 225 LAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLK 284
           L    +A  +     ++  +  +   E++E L  EL   +  LD   E E     +   +
Sbjct: 767 LESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD-ALERELESLEQRRER 825

Query: 285 LEEEIDTLKEELE 297
           LE+EI+ L+EE+E
Sbjct: 826 LEQEIEELEEEIE 838

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 45/218 (20%), Positives = 98/218 (44%), Gaps = 14/218 (6%)

Query: 96  EKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQ 155
           ++      +  EL+ +L  ++E+L +  E  E +++E  + +++L+      EE  EKLQ
Sbjct: 494 KEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ 553

Query: 156 EALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRN------------Q 203
              + ++  +    +++ + +  E   +   +++ EE ++ ++ ++             +
Sbjct: 554 LQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLE 613

Query: 204 HALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRL 263
             L    L     EL+  ++EL    +  N      +      E   EKVE L +E+ R 
Sbjct: 614 ELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRE 673

Query: 264 KALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRT 301
             L   + E +  +  E + +LEEE++ L+EELE+   
Sbjct: 674 --LQRIENEEQLEEKLEELEQLEEELEQLREELEELLK 709

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165
            EL+ +L  +QE L++ +E++E +E+   +  +E++E +   +   E+L E L  +    
Sbjct: 747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL-EELEEELEEA 805

Query: 166 ENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQEL 225
           E       R +E  +   E  +++ EE ++EIE +  +       L    +EL+ +K+EL
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEL 865

Query: 226 AMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRE---TESIKNRELV 282
                 K +      +  +  E   E++  L SEL  LK  ++  RE       K   L 
Sbjct: 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925

Query: 283 LKLEEEIDTLKEELEKSRT 301
           ++L E  + L+EE E +  
Sbjct: 926 VELPELEEELEEEYEDTLE 944

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 18/225 (8%)

Query: 97  KSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEK----------EKVQAIDELKEAQRV 146
           K++ R ++ + L A+L  ++++L++ +E++  +E+          E  + I+ELK     
Sbjct: 219 KAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278

Query: 147 AEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHAL 206
             E  E+LQE L+  K   E  E E     E  +      ++ EE   +E++        
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER-LEELKEKIEALKE 337

Query: 207 DVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKAL 266
           ++    +  +EL+++  EL    +   + LS   +         E  E L  EL  L+A 
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEE------LEELFEALREELAELEAE 391

Query: 267 LDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRS 311
           L   R       RE+   LEE ++ L E LE  +   K++  +  
Sbjct: 392 LAEIRNELEELKREIE-SLEERLERLSERLEDLKEELKELEAELE 435

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 12/214 (5%)

Query: 96  EKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAE------- 148
           E+++ +L +  E   +L  + E+L+K  EK+E  + EK +   ELK   R  E       
Sbjct: 175 EEAERKLERTEENLERLEDLLEELEKQLEKLE-RQAEKAERYQELKAELRELELALLLAK 233

Query: 149 --EANEKLQEA--LMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQH 204
             E  ++L+E    +++   E     E+    E E   +++  ++  E  +E++    + 
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293

Query: 205 ALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLK 264
             ++  L      L+   +EL    +   + L    +  +  +  +E+ E L  EL +L 
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353

Query: 265 ALLDSQRETESIKNRELVLKLEEEIDTLKEELEK 298
           A L+  +E    K   L+ +LEE  + L+EEL +
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAE 387

Length = 1163

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 62/263 (23%)

Query: 77  AITPSAKAATPPVKAATPPEKSQ-SRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQ 135
           A   +A     P +A     ++Q   L K   L+A+  LVQ+DL++    ++ I+++K +
Sbjct: 25  AFARAASNGDLPTEADV---QAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQK-E 80

Query: 136 AIDELKEAQRVAEEANEKLQEA---LMAQKRAEENSEIEKFRAVEMEQ--AGIEASQKKE 190
             ++LK  Q++A +A  KL++A   L A K   +    E    + + Q  + +  +  + 
Sbjct: 81  ETEQLK--QQLA-QAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQL 137

Query: 191 EEWQKEIEAV------------RNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSH 238
           +  Q ++               R Q AL   S     Q LQ+I+  L         AL  
Sbjct: 138 QNAQNDLAEYNSQLVSLQTQPERAQAALYANS-----QRLQQIRNLLKGGKVGGK-ALR- 190

Query: 239 ADDATKIAELHVEKVEI-LSSEL--------TRLKALLDSQRE--TESIKNRELVLKLEE 287
               ++   L  E+  +   ++L        T+L+ LL  QR+  T  I+      +LE 
Sbjct: 191 ---PSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQ------RLEH 241

Query: 288 EIDTLKEELEKSRTFGKKINGKR 310
           ++  L+E           IN KR
Sbjct: 242 QLQLLQEA----------INSKR 254

Length = 1113

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 18/235 (7%)

Query: 83   KAATPPVKAATPPEKSQSRLVKGSEL-QAQLNLVQEDLKKAKEKI---ELIEKEKVQAID 138
            K A    K A   +K+     K  E  +A+     ++ KKA+E     E  + E+ +  D
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549

Query: 139  ELKEAQRV--------AEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQ--- 187
            ELK+A+ +        AEEA +  ++  MA ++AEE  + E+ R  E+ +   E  +   
Sbjct: 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609

Query: 188  ---KKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATK 244
               KK EE + + E ++              +E +  K+   +    +   +  A++A K
Sbjct: 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669

Query: 245  IAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKS 299
              E   +  E   +E    KA    ++E E  K  E + K E E     EEL+K+
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA 1724

Length = 2084

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 22/206 (10%)

Query: 107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEE 166
           +L  +LN ++ +L +  E+IE  E+++ QA +   EA  V EE  E+ +E          
Sbjct: 203 DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEL------ETL 256

Query: 167 NSEIEKFRAV------EMEQAGIEASQKKE--EEWQKEIEAVRNQHALDVAS---LLSTT 215
            +EIE  R        E E+   E    +E  EE ++E + +  +  LD A    + +  
Sbjct: 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316

Query: 216 QELQRIKQELAMTTD----AKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR 271
           +EL+   +EL    +    A       A+   + A+   E+ E L  E   L++ L+  R
Sbjct: 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376

Query: 272 ETESIKNRELVLKLEEEIDTLKEELE 297
           E      RE + +LEEEI+ L+E   
Sbjct: 377 EAVE-DRREEIEELEEEIEELRERFG 401

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 16/206 (7%)

Query: 106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE 165
             ++ +L+ + ++L  A  KI  IEKE  Q   E ++ +   EE  E L    + Q+   
Sbjct: 698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS--LEQEIEN 755

Query: 166 ENSEIEKFRA-----------VEMEQAGIEA--SQKKEEEWQKEIEAVRNQHALDVASLL 212
             SE+++  A           +E     +EA  S  +  E Q E+  +  + +   A L 
Sbjct: 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815

Query: 213 STTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRE 272
              Q+L R+  E         +      D  +  +   +++E L+ +   L+  L+    
Sbjct: 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875

Query: 273 TESIKNRELVLKLEEEIDTLKEELEK 298
                   L   L++E D L+ +L +
Sbjct: 876 ALRDLESRLG-DLKKERDELEAQLRE 900

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 10  SETPSKASPATPRASKVGKGVTKPETDSHSPLQNSRLSIDRSPRSINSKPSIERRSPKVA 69
           +  P+  +P    +S + +  T P + + S   N+            + P+ ++ S    
Sbjct: 466 TADPTSGTPTGTTSSTLPE-DTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPN 524

Query: 70  STPPAKVAITPSAKAATPPVKAATP 94
           +T P  + I  +  A +PP    + 
Sbjct: 525 ATSPTPIVIGVTTTATSPPTGTTSV 549

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	100.0
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.25
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.59
PRK11637	428	AmiB activator; Provisional	97.47
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.44
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.41
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.31
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.31
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.25
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.22
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.1
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.1
PRK04778	569	septation ring formation regulator EzrA; Provision	97.03
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.98
COG4372	499	Uncharacterized protein conserved in bacteria with	96.9
PRK02224	880	chromosome segregation protein; Provisional	96.86
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.86
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.79
PRK11637	428	AmiB activator; Provisional	96.66
PRK02224	880	chromosome segregation protein; Provisional	96.63
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.6
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.33
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.27
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.23
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.95
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.79
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.76
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.65
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.62
KOG0971	1243	consensus Microtubule-associated protein dynactin	95.55
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.43
KOG1003	205	consensus Actin filament-coating protein tropomyos	95.25
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.25
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.22
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.15
KOG4807	593	consensus F-actin binding protein, regulates actin	94.96
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.9
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.75
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.36
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.26
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.14
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.04
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.8
PRK04863	1486	mukB cell division protein MukB; Provisional	93.69
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	93.48
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	93.47
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.16
PRK10476	346	multidrug resistance protein MdtN; Provisional	93.15
PF11570	136	E2R135: Coiled-coil receptor-binding R-domain of c	92.69
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.67
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.99
PRK15136	390	multidrug efflux system protein EmrA; Provisional	91.95
KOG1003	205	consensus Actin filament-coating protein tropomyos	91.78
PRK10929	1109	putative mechanosensitive channel protein; Provisi	91.66
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.54
KOG4673	961	consensus Transcription factor TMF, TATA element m	91.51
PRK09039	343	hypothetical protein; Validated	91.5
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.96
PRK04863	1486	mukB cell division protein MukB; Provisional	90.7
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	90.59
KOG0933	1174	consensus Structural maintenance of chromosome pro	90.48
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	90.31
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	89.98
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.85
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	89.74
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.65
PHA02562	562	46 endonuclease subunit; Provisional	89.42
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	89.32
PF14662	193	CCDC155: Coiled-coil region of CCDC155	89.06
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	88.33
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	88.25
PRK09039	343	hypothetical protein; Validated	88.03
PRK10929	1109	putative mechanosensitive channel protein; Provisi	87.68
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	87.62
KOG0933	1174	consensus Structural maintenance of chromosome pro	87.34
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.29
PRK10246	1047	exonuclease subunit SbcC; Provisional	87.22
PRK03918	880	chromosome segregation protein; Provisional	86.91
PRK04778	569	septation ring formation regulator EzrA; Provision	86.66
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.44
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	86.26
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	86.23
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	85.9
COG4942	420	Membrane-bound metallopeptidase [Cell division and	85.59
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	85.29
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	85.2
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	85.04
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	84.92
PRK11281	1113	hypothetical protein; Provisional	84.69
KOG0963	629	consensus Transcription factor/CCAAT displacement	84.68
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	84.32
KOG1103	561	consensus Predicted coiled-coil protein [Function	84.21
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.07
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	84.02
PF12001	111	DUF3496: Domain of unknown function (DUF3496); Int	83.65
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	82.92
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	82.89
PRK03598	331	putative efflux pump membrane fusion protein; Prov	82.88
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	82.8
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	82.76
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	82.72
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	82.69
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	81.22
KOG0964	1200	consensus Structural maintenance of chromosome pro	81.0
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	80.54
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	80.26

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=1.1e-34  Score=292.10  Aligned_cols=204  Identities=42%  Similarity=0.530  Sum_probs=185.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 039546          103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAG  182 (313)
Q Consensus       103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~  182 (313)
                      .+..++++||+++|+||++||+||.++|.+|.+||+||+.|||+|++|++||+.++.++.+|++++|+++||+++|++|.
T Consensus        27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~  106 (522)
T PF05701_consen   27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGI  106 (522)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhh
Confidence            46688999999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          183 IEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTR  262 (313)
Q Consensus       183 ~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~  262 (313)
                      ++   ..++.|+.+|++++.||+.++++|++|++||+++|++|++++++|+.|++||++|+++++.|.++|++|+.||++
T Consensus       107 ~~---~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~  183 (522)
T PF05701_consen  107 AE---EASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIA  183 (522)
T ss_pred             cc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44   456779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHhhhhhhh-----------------HHHHHHHHHHHHHHHHHHHhhhhHhHhhhhh
Q 039546          263 LKALLDSQRETESIKN-----------------RELVLKLEEEIDTLKEELEKSRTFGKKINGK  309 (313)
Q Consensus       263 lKe~Les~~~~e~~~~-----------------~e~~~~le~e~~~L~~el~ka~~~e~k~~~~  309 (313)
                      ||++|++.+.......                 -..+.+.+.++..|+.++..+++++.+|...
T Consensus       184 lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a  247 (522)
T PF05701_consen  184 LKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEA  247 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999865322100                 0246777888999999999999999888753

Several sequences in this family are described as being myosin heavy chain-like.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.25  E-value=0.0015  Score=67.05  Aligned_cols=197  Identities=23%  Similarity=0.327  Sum_probs=117.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRV-------AEEANEKLQEALMAQKRAEENSEIEKFRAVEM  178 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~-------ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~El  178 (313)
                      ...-..|+.+++||.+++..+..+-..|..++...+.+-+.       +++|+..|...+.+-..+..+..-+.-.-..+
T Consensus       126 ~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~  205 (522)
T PF05701_consen  126 ASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEI  205 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556799999999999999999999999999998887655       55555555554444443322221111111111


Q ss_pred             HHhhhhhhhhhhHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHH-------------
Q 039546          179 EQAGIEASQKKEEEWQKEIEA-------VRNQHALD---VASLLSTTQELQRIKQELAMTTDAKNQA-------------  235 (313)
Q Consensus       179 Eq~~~~~a~~~~~a~k~ELE~-------ar~qha~~---~AeL~Sak~EL~klrqEl~~~~~ak~aA-------------  235 (313)
                      ...    -+..-..|+.+|+.       .+.++...   -..|..+..+|..|+.++......+...             
T Consensus       206 ~~~----~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~  281 (522)
T PF05701_consen  206 AAE----REQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQS  281 (522)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHH
Confidence            100    01112345555444       44444221   1457778888888888888877744443             


Q ss_pred             -hhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHh
Q 039546          236 -LSHADDATKIAELHV-----------EKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFG  303 (313)
Q Consensus       236 -~~~AeeA~~aae~~~-----------eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~e  303 (313)
                       +..+..=..-++.+-           ..|+-|..||...|..|......+.... ..|..|+.++..++.+|+.+..-+
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~-~~v~~L~~eL~~~r~eLea~~~~e  360 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEAS-SEVSSLEAELNKTRSELEAAKAEE  360 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHhhHHHHHHHHHHHHHHHHhhh
Confidence             221111111111111           1244477777777777777776554333 568999999999999998888776


Q ss_pred             Hhhh
Q 039546          304 KKIN  307 (313)
Q Consensus       304 ~k~~  307 (313)
                      .+..
T Consensus       361 ~~~k  364 (522)
T PF05701_consen  361 EKAK  364 (522)
T ss_pred             cchh
Confidence            6543

Several sequences in this family are described as being myosin heavy chain-like.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.59  E-value=0.035  Score=51.40  Aligned_cols=54  Identities=31%  Similarity=0.369  Sum_probs=47.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA  157 (313)
Q Consensus       104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a  157 (313)
                      |+..++.+|+.+++.+..+...|..++....++-.|+..-.+.|..|...|+.+
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~   55 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA   55 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            677889999999999999999999999999999999999988888886666655

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK11637 AmiB activator; Provisional

Probab=97.47  E-value=0.14  Score=50.97  Aligned_cols=55  Identities=9%  Similarity=0.160  Sum_probs=29.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALM  159 (313)
Q Consensus       105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~  159 (313)
                      ..+++.+|...+++|...+.++...+..-..+..+|..+...|.++...|...+.
T Consensus        49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~  103 (428)
T PRK11637         49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNK  103 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555555555555555444444433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.44  E-value=0.08  Score=59.50  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHhHhhhhhcc
Q 039546          256 LSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRS  311 (313)
Q Consensus       256 Lt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~~e~k~~~~e~  311 (313)
                      ...++..|+..++....+...-. ..|.+|+.+|..|..+|...+....+|.+-+.
T Consensus       748 ~~~~~~~le~~~~~eL~~~GvD~-~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~  802 (1201)
T PF12128_consen  748 AKEQLKELEQQYNQELAGKGVDP-ERIQQLKQEIEQLEKELKRIEERRAEVIEYED  802 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            44455556656665554333333 58999999999999999999999998887654

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.41  E-value=0.28  Score=53.10  Aligned_cols=40  Identities=18%  Similarity=0.321  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          115 VQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL  154 (313)
Q Consensus       115 ~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL  154 (313)
                      ++.++..++.++...+........+++..+..+..+...+
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  331 (1164)
T TIGR02169       292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI  331 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.31  E-value=0.35  Score=52.03  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=16.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELK  141 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE  141 (313)
                      .+++.++..++.++..+..++...+.....+..+++
T Consensus       673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~  708 (1179)
T TIGR02168       673 LERRREIEELEEKIEELEEKIAELEKALAELRKELE  708 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555544444444444333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.31  E-value=0.37  Score=52.21  Aligned_cols=17  Identities=24%  Similarity=0.413  Sum_probs=6.4

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 039546          107 ELQAQLNLVQEDLKKAK  123 (313)
Q Consensus       107 elE~QL~~~QeEL~k~K  123 (313)
                      +++.++..+++++..+.
T Consensus       262 ~~~~~~~~~~~~~~~~~  278 (1164)
T TIGR02169       262 ELEKRLEEIEQLLEELN  278 (1164)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.25  E-value=0.18  Score=47.47  Aligned_cols=52  Identities=25%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          114 LVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE  165 (313)
Q Consensus       114 ~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~  165 (313)
                      ....+|..++.++..+-..|+++..+++..+..+++++.+++........+.
T Consensus        51 ~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le  102 (312)
T PF00038_consen   51 MYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE  102 (312)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555666666666666666666666666666666665544444333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.22  E-value=0.44  Score=51.28  Aligned_cols=30  Identities=17%  Similarity=0.318  Sum_probs=13.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          104 KGSELQAQLNLVQEDLKKAKEKIELIEKEK  133 (313)
Q Consensus       104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~K  133 (313)
                      ....++.++..++.++..+..++...+...
T Consensus       678 e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l  707 (1179)
T TIGR02168       678 EIEELEEKIEELEEKIAELEKALAELRKEL  707 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.10  E-value=0.26  Score=46.48  Aligned_cols=187  Identities=18%  Similarity=0.219  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHhhh-
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRA-VEMEQAGI-  183 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra-~ElEq~~~-  183 (313)
                      ..++.+++.++.++..++.+++..-..+..+-.|+...++.+++.+.-.-..+..-....+...+-+.-- +|+...-. 
T Consensus        71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~  150 (312)
T PF00038_consen   71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ  150 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence            6788899999999999999999999999999999999999999888776666555555555444443222 22222110 


Q ss_pred             ---hhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH----HHHH
Q 039546          184 ---EASQKK----EEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAEL----HVEK  252 (313)
Q Consensus       184 ---~~a~~~----~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~----~~eK  252 (313)
                         ....+.    ...+..-|..+|.+|...+..-.   ++++   .-|..-+..-.....+...+...++.    .-..
T Consensus       151 ~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~---~e~e---~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~  224 (312)
T PF00038_consen  151 IQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNR---EELE---EWYQSKLEELRQQSEKSSEELESAKEELKELRRQ  224 (312)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccceeecccccccchhhhhhHHHHHHHHHhhhh---hhhh---hhcccccccccccccccccccchhHhHHHHHHhh
Confidence               111122    23344455667777766543332   2221   22222222222222232233322222    2233


Q ss_pred             HHHHHHHHHHHHHH---h-------hhhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039546          253 VEILSSELTRLKAL---L-------DSQRETESIKNRELVLKLEEEIDTLKEELEK  298 (313)
Q Consensus       253 veeLt~EL~~lKe~---L-------es~~~~e~~~~~e~~~~le~e~~~L~~el~k  298 (313)
                      +..|..+|..++..   |       +..++.+.......|..|+.|+..|+.++..
T Consensus       225 ~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~  280 (312)
T PF00038_consen  225 IQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMAR  280 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence            66677777666642   2       2222333344456788888888888888754

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.10  E-value=0.69  Score=51.29  Aligned_cols=88  Identities=23%  Similarity=0.278  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHH
Q 039546          215 TQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKE  294 (313)
Q Consensus       215 k~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~  294 (313)
                      +.|+.-+..-.+|+.-.|.-|--+|+.=+.-.+.-.+|+++|+.+|.=||+..+.....--..+.-...+||..+..||.
T Consensus       303 k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKd  382 (1243)
T KOG0971|consen  303 KEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKD  382 (1243)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHH
Confidence            33444444445555555666666666666556667788999999999999888766322212333456667777776666


Q ss_pred             HHHhhhhH
Q 039546          295 ELEKSRTF  302 (313)
Q Consensus       295 el~ka~~~  302 (313)
                      -|-+-+++
T Consensus       383 alVrLRDl  390 (1243)
T KOG0971|consen  383 ALVRLRDL  390 (1243)
T ss_pred             HHHHHHhc
Confidence            55555444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.03  E-value=0.39  Score=49.91  Aligned_cols=183  Identities=16%  Similarity=0.251  Sum_probs=134.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA  185 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~  185 (313)
                      -.++.+|..+++.|..+...|...+-..+.  ..++.-...|+.|...|+.--.+.+.+......-.--+..++.     
T Consensus       252 ~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~--~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e-----  324 (569)
T PRK04778        252 LDIEKEIQDLKEQIDENLALLEELDLDEAE--EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE-----  324 (569)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhcChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----
Confidence            357889999999999999888888777655  4566888999999999999887777777766665555555443     


Q ss_pred             hhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          186 SQKKEEEWQKEIEAVRNQHA---LDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTR  262 (313)
Q Consensus       186 a~~~~~a~k~ELE~ar~qha---~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~  262 (313)
                         ....+..+|+.+++.|.   .++........+|..+..+|..+...-+.....-.+....-+...++++.+..+...
T Consensus       325 ---~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~e  401 (569)
T PRK04778        325 ---QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEK  401 (569)
T ss_pred             ---HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               35679999999999986   456667778888999999888655443333333444444456666778888888888


Q ss_pred             HHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 039546          263 LKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKS  299 (313)
Q Consensus       263 lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka  299 (313)
                      +++.|..-+..+.... ..+.++...+..++..|++.
T Consensus       402 i~e~l~~Lrk~E~eAr-~kL~~~~~~L~~ikr~l~k~  437 (569)
T PRK04778        402 LSEMLQGLRKDELEAR-EKLERYRNKLHEIKRYLEKS  437 (569)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence            8888887775554433 56788888888888877775

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.98  E-value=0.55  Score=53.03  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=81.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546          188 KKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALL  267 (313)
Q Consensus       188 ~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~L  267 (313)
                      ......+.+++-.++...-....+.-++.|++-..-+|+.+....+..+++.+++...-........+...+|..+++.|
T Consensus       472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l  551 (1293)
T KOG0996|consen  472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL  551 (1293)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33456778888888888888889999999999999999999999999999999988766665566777777888888888


Q ss_pred             hhhHhhhh------hhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546          268 DSQRETES------IKNRELVLKLEEEIDTLKEELEKSRT  301 (313)
Q Consensus       268 es~~~~e~------~~~~e~~~~le~e~~~L~~el~ka~~  301 (313)
                      .+-...-.      ........+|..-...|+++++.++.
T Consensus       552 ~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks  591 (1293)
T KOG0996|consen  552 PSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS  591 (1293)
T ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77442111      11112333344444466666666655

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.90  E-value=0.62  Score=47.49  Aligned_cols=145  Identities=20%  Similarity=0.271  Sum_probs=70.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA  185 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~  185 (313)
                      -++..||..+..||.-+..+...+|.++-.|-+||..+.-.-+-....+..+....-.|.+          +|-+.    
T Consensus        77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ----------~lar~----  142 (499)
T COG4372          77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQ----------ELARL----  142 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH----
Confidence            3444455555555555555555555555555556555554433333333333322222222          11111    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhh-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039546          186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIK---QELAMT-TDAKNQALSHADDATKIAELHVEKVEILSSELT  261 (313)
Q Consensus       186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klr---qEl~~~-~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~  261 (313)
                       ..-..-++++|...-.||....+.++|+-.+-..|+   .++..- .+=+.-+.+-+.++...+ -..+-++-++.||.
T Consensus       143 -t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la-~r~~a~q~r~~ela  220 (499)
T COG4372         143 -TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA-TRANAAQARTEELA  220 (499)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence             111234778888888888888888888776665555   333221 111111111222222222 23344666777777


Q ss_pred             HHHHH
Q 039546          262 RLKAL  266 (313)
Q Consensus       262 ~lKe~  266 (313)
                      +....
T Consensus       221 ~r~aa  225 (499)
T COG4372         221 RRAAA  225 (499)
T ss_pred             HHHHH
Confidence            76553

>PRK02224 chromosome segregation protein; Provisional

Probab=96.86  E-value=0.9  Score=48.81  Aligned_cols=68  Identities=15%  Similarity=0.118  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          197 IEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLK  264 (313)
Q Consensus       197 LE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lK  264 (313)
                      ++....+...+...+....+++..++.+|.........+....+++..-......++.+|..++.++.
T Consensus       525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le  592 (880)
T PRK02224        525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE  592 (880)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444555555556666666666666666655555555555554444444455555555555554

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.86  E-value=0.3  Score=45.29  Aligned_cols=180  Identities=21%  Similarity=0.239  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhH
Q 039546          112 LNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEE  191 (313)
Q Consensus       112 L~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~  191 (313)
                      +..++.+|..+.+++..++..=..+...++.+.-.+..|+.++......-.++.+-......++.++++..    ++.. 
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~----de~e-   77 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA----DESE-   77 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH----HHHC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHH-
Confidence            56788999999999999998888888888899999999999988887777777777777788888887743    2222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQ-------ELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLK  264 (313)
Q Consensus       192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrq-------El~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lK  264 (313)
                         .-+.+...++..+---|...-..|..++.       -|+.+..-=...-..-+.|..-++....++.+|-.+|..+-
T Consensus        78 ---r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~  154 (237)
T PF00261_consen   78 ---RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG  154 (237)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence               22333334444443333333333333333       33322222122222233444445566677888888888888


Q ss_pred             HHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546          265 ALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR  300 (313)
Q Consensus       265 e~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~  300 (313)
                      ..|.+--.++.+.. .....++..|..|...|..|.
T Consensus       155 ~~lk~lE~~~~~~~-~re~~~e~~i~~L~~~lkeaE  189 (237)
T PF00261_consen  155 NNLKSLEASEEKAS-EREDEYEEKIRDLEEKLKEAE  189 (237)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence            88887666655444 677899999999999988764

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.79  E-value=0.58  Score=53.06  Aligned_cols=99  Identities=23%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT-------TDAKNQALSHADDATKIAELHVEKVEILSSELTRLKA  265 (313)
Q Consensus       193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~-------~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe  265 (313)
                      .+.-|+.+++.-+.+-..+.++.+.|.+|-.-.+.+       -.+-..+.+-|..|...|.......+.|-.-..+.+.
T Consensus      1596 a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~ 1675 (1758)
T KOG0994|consen 1596 AQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDR 1675 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666665555566555554433322221       1222233444555555555555556677777777777


Q ss_pred             HhhhhHhhhhhhhHHHHHHHHHHHHHH
Q 039546          266 LLDSQRETESIKNRELVLKLEEEIDTL  292 (313)
Q Consensus       266 ~Les~~~~e~~~~~e~~~~le~e~~~L  292 (313)
                      +|+...+.... +.+.+.+|..|+..|
T Consensus      1676 l~~~r~~g~~~-ar~rAe~L~~eA~~L 1701 (1758)
T KOG0994|consen 1676 LLEKRMEGSQA-ARERAEQLRTEAEKL 1701 (1758)
T ss_pred             HHHHHhhcchh-HHHHHHHHHHHHHHH
Confidence            88777654432 235566666666655

>PRK11637 AmiB activator; Provisional

Probab=96.66  E-value=0.82  Score=45.62  Aligned_cols=56  Identities=18%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQK  162 (313)
Q Consensus       107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~  162 (313)
                      +++.+|..++++|...+..+.........+..+|....+.|..+..+|...+..-.
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~   99 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLN   99 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555544443333

>PRK02224 chromosome segregation protein; Provisional

Probab=96.63  E-value=1.3  Score=47.55  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=14.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKE  132 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~  132 (313)
                      ..++.++..++.++..++.++...+..
T Consensus       209 ~~~~~~l~el~~~i~~~~~~~~~l~~~  235 (880)
T PRK02224        209 NGLESELAELDEEIERYEEQREQARET  235 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555565555555555555555554433

>TIGR00606 rad50 rad50

Probab=96.60  E-value=1  Score=51.27  Aligned_cols=113  Identities=5%  Similarity=0.097  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHhhhhh-hhh
Q 039546          116 QEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRA------EENSEIEKFRAVEMEQAGIEA-SQK  188 (313)
Q Consensus       116 QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA------~e~sEl~k~Ra~ElEq~~~~~-a~~  188 (313)
                      ..+++.+++++...+..-..+..+|+.....++.+...++.+..-...+      .....-.+-++.+++...... ...
T Consensus       743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~  822 (1311)
T TIGR00606       743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR  822 (1311)
T ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence            4566667777777776666666666666666666666665553322222      344444455555554321100 111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546          189 KEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT  228 (313)
Q Consensus       189 ~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~  228 (313)
                      .-...+.++......+......+.....+..+++.++..+
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1134666666666666666555555555555555544444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.33  E-value=1.8  Score=49.11  Aligned_cols=86  Identities=24%  Similarity=0.283  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHH
Q 039546          214 TTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLK  293 (313)
Q Consensus       214 ak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~  293 (313)
                      -..|+.++..++.-....-+.+-...+.|..-.++-..+.+.+..-+..+|+.|....++-.... ..|..++.++..++
T Consensus       477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~-~~l~~~k~~l~~~k  555 (1293)
T KOG0996|consen  477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKK-TELDDLKEELPSLK  555 (1293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHH
Confidence            35678888888888888888888888888877777778888899999999999998876655444 56888999999999


Q ss_pred             HHHHhhh
Q 039546          294 EELEKSR  300 (313)
Q Consensus       294 ~el~ka~  300 (313)
                      +|+-.+.
T Consensus       556 ~e~~~~~  562 (1293)
T KOG0996|consen  556 QELKEKE  562 (1293)
T ss_pred             HHHHHHH
Confidence            9886553

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.27  E-value=3.1  Score=47.87  Aligned_cols=78  Identities=24%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 039546           99 QSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDE----------------LKEAQRVAEEANEKLQEALMAQK  162 (313)
Q Consensus        99 ~~r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~E----------------LE~AKr~ieeL~~KLE~a~~~q~  162 (313)
                      ..|..++.+|+.+|..+..+|..+..++...+..+.++-.|                +..|.+.+......++.+...-.
T Consensus       738 ~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~  817 (1353)
T TIGR02680       738 RARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAA  817 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667889999999999999999888888887776655444                45555555555555555555555


Q ss_pred             HHHHhhHHHHHHHH
Q 039546          163 RAEENSEIEKFRAV  176 (313)
Q Consensus       163 qA~e~sEl~k~Ra~  176 (313)
                      .+..+..-++.++.
T Consensus       818 ~a~~~~~~a~~~l~  831 (1353)
T TIGR02680       818 AAAAAWKQARRELE  831 (1353)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55554444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.23  E-value=3.2  Score=49.47  Aligned_cols=188  Identities=20%  Similarity=0.293  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH----HHhhHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE----------ALMAQKRA----EENSEIE  171 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~----------a~~~q~qA----~e~sEl~  171 (313)
                      ..++.+...+++++...++++..-|....++..|...+...+..|...+..          .......+    ..+...+
T Consensus       925 ~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~ 1004 (1930)
T KOG0161|consen  925 AELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAE 1004 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666667777777777777766666666655555555444443332221          11111000    0111111


Q ss_pred             HH--------------HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 039546          172 KF--------------RAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALS  237 (313)
Q Consensus       172 k~--------------Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~  237 (313)
                      +-              .+.+|+.     .-+...-.+.++|-.+..+...+..+.....++...+.+|+..+.-+..-+.
T Consensus      1005 eek~~~l~k~~~kle~~l~~le~-----~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~ 1079 (1930)
T KOG0161|consen 1005 EEKAKSLNKAKAKLEQQLDDLEV-----TLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELS 1079 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11              1112221     1122334556666666667777777777777777777777777777766665


Q ss_pred             hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 039546          238 HAD----DATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKS  299 (313)
Q Consensus       238 ~Ae----eA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka  299 (313)
                      +..    +=..........|.+|...|..+.+.|+..+.+-++.- ...+.|..++..|+.+|+..
T Consensus      1080 ~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e-k~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1080 QLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE-RQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            422    21212223334477777777777777777776555443 34666667777777666665

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.95  E-value=3.9  Score=46.12  Aligned_cols=59  Identities=25%  Similarity=0.301  Sum_probs=43.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQK  162 (313)
Q Consensus       104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~  162 (313)
                      +..+++.+|..++..+..+-..+......-.++...+...+.++.++...++.....-.
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA  726 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567778888888888888888888888888888888888777777777666654444

>TIGR00606 rad50 rad50

Probab=95.79  E-value=4.9  Score=45.93  Aligned_cols=47  Identities=15%  Similarity=0.043  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039546          211 LLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILS  257 (313)
Q Consensus       211 L~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt  257 (313)
                      |.-...++.++..+|+.+.........++...+...+.....+..|.
T Consensus       911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1311)
T TIGR00606       911 DSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM  957 (1311)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445544444444444444444433333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.76  E-value=3.1  Score=45.61  Aligned_cols=115  Identities=14%  Similarity=0.190  Sum_probs=73.1

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHH
Q 039546          102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKF--RAVEME  179 (313)
Q Consensus       102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~--Ra~ElE  179 (313)
                      -+++..++--|..++.||-.++.++..++..+.....+|+.=+....-++.+++.+...-.  ..++|+..+  +..-+.
T Consensus       237 d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~--rk~~E~~~~qt~l~~~~  314 (775)
T PF10174_consen  237 DTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELS--RKKSELEALQTRLETLE  314 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            4578889999999999999999999999999999999999888888888888887743333  333333333  333333


Q ss_pred             HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          180 QAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQ  219 (313)
Q Consensus       180 q~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~  219 (313)
                      ...++- ..+-..++..|.+...+|..--++++....+|+
T Consensus       315 ~~~~d~-r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle  353 (775)
T PF10174_consen  315 EQDSDM-RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE  353 (775)
T ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            222221 222233455555555555554444444443333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.65  E-value=5.1  Score=45.21  Aligned_cols=51  Identities=31%  Similarity=0.389  Sum_probs=20.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQ  155 (313)
Q Consensus       105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE  155 (313)
                      +..++.++..+-.++..++..+...+.....+-..+...++.++.+...+.
T Consensus       676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (1163)
T COG1196         676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA  726 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444334444443333333333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.62  E-value=2.1  Score=48.81  Aligned_cols=111  Identities=20%  Similarity=0.150  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHH
Q 039546          114 LVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEW  193 (313)
Q Consensus       114 ~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~  193 (313)
                      .++.-+..+++-|+.|+.+-..|.+=+..|-+-+.....-|..++.+-.-|+...-.+-.|+.+|+.-..+.   +..++
T Consensus      1560 ~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l---k~~~~ 1636 (1758)
T KOG0994|consen 1560 DVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL---KHKAA 1636 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            444444555566666666666666666666666666666666666666666666666666777766532111   01122


Q ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 039546          194 QKEIEAVRNQHA--LDVASLLSTTQELQRIKQELAM  227 (313)
Q Consensus       194 k~ELE~ar~qha--~~~AeL~Sak~EL~klrqEl~~  227 (313)
                      +.-.++......  ++...-..|.+.++.|+..|..
T Consensus      1637 qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~ 1672 (1758)
T KOG0994|consen 1637 QNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL 1672 (1758)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222  2222334567777766666654

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.55  E-value=5.3  Score=44.73  Aligned_cols=72  Identities=22%  Similarity=0.284  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhh---------hHHHHH
Q 039546          213 STTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIK---------NRELVL  283 (313)
Q Consensus       213 Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~---------~~e~~~  283 (313)
                      +.|+..+++.+++++.-.+=       .+-.+..+.-..+++++-.-|..+|+.+|.+...|+--         --+.|+
T Consensus       393 ~ek~d~qK~~kelE~k~sE~-------~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVk  465 (1243)
T KOG0971|consen  393 SEKQDHQKLQKELEKKNSEL-------EELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVK  465 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHH
Confidence            34555555555555432221       12233444555667777778888888888888776611         114566


Q ss_pred             HHHHHHHH
Q 039546          284 KLEEEIDT  291 (313)
Q Consensus       284 ~le~e~~~  291 (313)
                      .||++|..
T Consensus       466 lLeetv~d  473 (1243)
T KOG0971|consen  466 LLEETVGD  473 (1243)
T ss_pred             HHHHHHHH
Confidence            66666643

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.43  E-value=0.62  Score=40.63  Aligned_cols=101  Identities=26%  Similarity=0.346  Sum_probs=61.6

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039546          101 RLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ  180 (313)
Q Consensus       101 r~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq  180 (313)
                      .-.|.+.++.+|+.+++.|..++..+..++.....+    +...|-|.-|-..|+.+..--..+.+-..-...++.+++.
T Consensus        40 L~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~----E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eR  115 (143)
T PF12718_consen   40 LQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA----EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFER  115 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            345779999999999999999999999887654332    1334444444444444433333333333333444444443


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHH
Q 039546          181 AGIEASQKKEEEWQKEIEAVRNQHAL  206 (313)
Q Consensus       181 ~~~~~a~~~~~a~k~ELE~ar~qha~  206 (313)
                      .... .......|-..++.+..+|..
T Consensus       116 kv~~-le~~~~~~E~k~eel~~k~~~  140 (143)
T PF12718_consen  116 KVKA-LEQERDQWEEKYEELEEKYKE  140 (143)
T ss_pred             HHHH-HHhhHHHHHHHHHHHHHHHHH
Confidence            2211 122356799999999999975

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=95.25  E-value=2.6  Score=39.34  Aligned_cols=175  Identities=24%  Similarity=0.267  Sum_probs=114.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039546          103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQ-EALMAQKRAEENSEIEKFRAVEMEQA  181 (313)
Q Consensus       103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE-~a~~~q~qA~e~sEl~k~Ra~ElEq~  181 (313)
                      -+++.|+.+|+..|+-+.-+..+|..++    |+.+|-+...+.|+--..+|+ +......|..++..++.--....+. 
T Consensus        11 rri~~leeele~aqErl~~a~~KL~Eae----q~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE-   85 (205)
T KOG1003|consen   11 RRIQLLEEELDRAQERLATALQKLEEAE----QAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE-   85 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3778999999999999999999999887    567888889999999999998 4444455555555444433333322 


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039546          182 GIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELT  261 (313)
Q Consensus       182 ~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~  261 (313)
                          ....=+....+|+.+-++-...-+...-.-.++..+...+..+--.-...+++       -......+..|+.   
T Consensus        86 ----VarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~-------~d~~e~~ik~ltd---  151 (205)
T KOG1003|consen   86 ----VARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQK-------EEKYEEELKELTD---  151 (205)
T ss_pred             ----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhh-------HHHHHHHHHHHHH---
Confidence                12223455677888888877777777777778888777776654333333333       1223344444443   


Q ss_pred             HHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546          262 RLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSRT  301 (313)
Q Consensus       262 ~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~  301 (313)
                      .||+.     +..+.-+-.-|.+|+.+++.|-..|...+.
T Consensus       152 KLkEa-----E~rAE~aERsVakLeke~DdlE~kl~~~k~  186 (205)
T KOG1003|consen  152 KLKEA-----ETRAEFAERRVAKLEKERDDLEEKLEEAKE  186 (205)
T ss_pred             HHhhh-----hhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence            34431     111222225689999999999888876553

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.25  E-value=9.5  Score=45.78  Aligned_cols=128  Identities=21%  Similarity=0.232  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA  185 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~  185 (313)
                      .++|.+|.-++..+-...++....+..+..+-+++..-+..++++...+.+++.+...+.....--+-+...++..    
T Consensus       904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~----  979 (1930)
T KOG0161|consen  904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN----  979 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            4555556666666666666666666666666666666666777666666666655555444333333232222221    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 039546          186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSH  238 (313)
Q Consensus       186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~  238 (313)
                       ..+-.--+.+|+.+-.++..++....--...|.+++..|+..++.....+.+
T Consensus       980 -~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen  980 -ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111223344666655666666666555556666666666655555554443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.22  E-value=2.6  Score=45.77  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=78.5

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHH
Q 039546          102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALM------AQKRAEENSEIEKFRA  175 (313)
Q Consensus       102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~------~q~qA~e~sEl~k~Ra  175 (313)
                      ++-+.+|=++|+.-  ||.|++.||...|..|...+.-|++++..++-....|-.=+.      ++-.|+......+-+-
T Consensus       252 ~~lv~DLfSEl~~~--EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~  329 (717)
T PF09730_consen  252 PSLVSDLFSELNLS--EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQ  329 (717)
T ss_pred             CcccchhhhhcchH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence            44568888998874  899999999999999999999999999999777766653211      1122222111100000


Q ss_pred             HHHHHhhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039546          176 VEMEQAGIEASQKKEEEW---QKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTD  230 (313)
Q Consensus       176 ~ElEq~~~~~a~~~~~a~---k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~  230 (313)
                      ..........+++.....   -..++...-+|..++.+....+.||..|+..|...-.
T Consensus       330 ~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~  387 (717)
T PF09730_consen  330 SAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE  387 (717)
T ss_pred             hhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000000011100000   0125667788999999999999999999999987644

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.15  E-value=5  Score=41.96  Aligned_cols=181  Identities=20%  Similarity=0.304  Sum_probs=131.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA  185 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~  185 (313)
                      -++..+|..+++.|..+...|...+-..+.  ..++.....|+.|..-|+.=-.++....+......-.+..+..     
T Consensus       248 ~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~--~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~-----  320 (560)
T PF06160_consen  248 LDIEEEIEQIEEQLEEALALLKNLELDEVE--EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKE-----  320 (560)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----
Confidence            457889999999999999999888776654  4566788899999999998777777666666555555444433     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhH---HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 039546          186 SQKKEEEWQKEIEAVRNQHALDVASL---LSTTQELQRIKQELAMTT---DAKNQALSHADDATKIAELHVEKVEILSSE  259 (313)
Q Consensus       186 a~~~~~a~k~ELE~ar~qha~~~AeL---~Sak~EL~klrqEl~~~~---~ak~aA~~~AeeA~~aae~~~eKveeLt~E  259 (313)
                         .+..+..+++.++..|...--++   .....+|..|...|..+.   .....+++...+-.   +...+.++.+..+
T Consensus       321 ---~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l---~~~~~~l~~ie~~  394 (560)
T PF06160_consen  321 ---QNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEEL---EEIEEQLEEIEEE  394 (560)
T ss_pred             ---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH---HHHHHHHHHHHHH
Confidence               36779999999999997654444   445567777777776554   33444444444333   4455667778888


Q ss_pred             HHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546          260 LTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR  300 (313)
Q Consensus       260 L~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~  300 (313)
                      ...+.+.|..-...|. .+.+.+.++...+...+..+++.+
T Consensus       395 q~~~~~~l~~L~~dE~-~Ar~~l~~~~~~l~~ikR~lek~n  434 (560)
T PF06160_consen  395 QEEINESLQSLRKDEK-EAREKLQKLKQKLREIKRRLEKSN  434 (560)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8888888888775554 445889999999999999999875

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=94.96  E-value=4.1  Score=41.91  Aligned_cols=188  Identities=25%  Similarity=0.290  Sum_probs=100.8

Q ss_pred             cchhhHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 039546          103 VKGSELQAQLNLVQEDLKKA----------------------KEKIELIEKEKVQAIDELKE-AQRVAEEANEKLQEALM  159 (313)
Q Consensus       103 ~~~~elE~QL~~~QeEL~k~----------------------KeQl~~AE~~KaqAl~ELE~-AKr~ieeL~~KLE~a~~  159 (313)
                      ..++.|+.||+....+++-.                      -.-+..-|.+.-+++.||.. -.|.++-|...-+..++
T Consensus       298 k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLA  377 (593)
T KOG4807|consen  298 KEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLA  377 (593)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            45688888888776665322                      22233445555555555543 23444444443333332


Q ss_pred             HHHHH-HHhhHHHHHHH-HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 039546          160 AQKRA-EENSEIEKFRA-VEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALS  237 (313)
Q Consensus       160 ~q~qA-~e~sEl~k~Ra-~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~  237 (313)
                      ++--| +.+-|.+|.-- .||+...     +++....+..+..|.||-.   +|.+++.||+-|-.+|.--+-+ ++.+-
T Consensus       378 EETAATiSAIEAMKnAhrEEmeREL-----eKsqSvnsdveaLRrQyle---elqsvqRELeVLSEQYSQKCLE-nahLa  448 (593)
T KOG4807|consen  378 EETAATISAIEAMKNAHREEMEREL-----EKSQSVNSDVEALRRQYLE---ELQSVQRELEVLSEQYSQKCLE-NAHLA  448 (593)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHH-----HhhhccccChHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            22111 12223333322 4444421     1233456667889999965   7889999999999998654322 33444


Q ss_pred             hhHHHHHHH-----------HHHHHH-HHHHHHHHHHHHHHhhhhHhhhhh----h--hH----------HHHHHHHHHH
Q 039546          238 HADDATKIA-----------ELHVEK-VEILSSELTRLKALLDSQRETESI----K--NR----------ELVLKLEEEI  289 (313)
Q Consensus       238 ~AeeA~~aa-----------e~~~eK-veeLt~EL~~lKe~Les~~~~e~~----~--~~----------e~~~~le~e~  289 (313)
                      +|-+|.+-+           ..+... -+-|..||.+|+..|.+...+...    +  +-          -.|.-|.-||
T Consensus       449 qalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEi  528 (593)
T KOG4807|consen  449 QALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEI  528 (593)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHH
Confidence            444443222           112222 234889999999999876653221    1  10          1344556666


Q ss_pred             HHHHHHHHhh
Q 039546          290 DTLKEELEKS  299 (313)
Q Consensus       290 ~~L~~el~ka  299 (313)
                      +.||-+|+-+
T Consensus       529 ssLkDELQta  538 (593)
T KOG4807|consen  529 SSLKDELQTA  538 (593)
T ss_pred             HHHHHHHHHH
Confidence            6666666543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.90  E-value=8.9  Score=43.61  Aligned_cols=43  Identities=21%  Similarity=0.365  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546          189 KEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDA  231 (313)
Q Consensus       189 ~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~a  231 (313)
                      .-..|+.+++..+.+|..-...-..+......+++.+......
T Consensus       353 ~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~  395 (1201)
T PF12128_consen  353 QLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR  395 (1201)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467999999888888777766666666666655555544433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.75  E-value=6.7  Score=41.48  Aligned_cols=17  Identities=29%  Similarity=0.282  Sum_probs=8.6

Q ss_pred             hhHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKA  122 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~  122 (313)
                      .-+|.+|..+|++...+
T Consensus       139 ~~lQ~qlE~~qkE~eeL  155 (546)
T PF07888_consen  139 QLLQNQLEECQKEKEEL  155 (546)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555555555554333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.36  E-value=7.1  Score=40.10  Aligned_cols=58  Identities=22%  Similarity=0.320  Sum_probs=47.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQ  161 (313)
Q Consensus       104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q  161 (313)
                      ++.+.+.++.+++.+|+..+..+...+..-.+...+|.+.++.|+++...|+..+..+
T Consensus        53 ~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4566667778888888888888888888888888899999999999988888876554

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.26  E-value=8.6  Score=40.70  Aligned_cols=83  Identities=28%  Similarity=0.294  Sum_probs=53.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHH
Q 039546          186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT-TDAKNQALSHADDAT---KIAELHVEKVEILSSELT  261 (313)
Q Consensus       186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~-~~ak~aA~~~AeeA~---~aae~~~eKveeLt~EL~  261 (313)
                      ++....-++.||..+....--.+++|..++-|...|+.+++.+ +.-|....+.+.+..   ..++....+|+.|+.|+.
T Consensus       302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~  381 (546)
T PF07888_consen  302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQ  381 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3444556777777777777777888888888888888776644 233333333333333   234444457888999998


Q ss_pred             HHHHHhh
Q 039546          262 RLKALLD  268 (313)
Q Consensus       262 ~lKe~Le  268 (313)
                      .+.+.|.
T Consensus       382 ~~e~~lq  388 (546)
T PF07888_consen  382 MLEEHLQ  388 (546)
T ss_pred             HHHHHHH
Confidence            8877663

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.14  E-value=11  Score=41.35  Aligned_cols=159  Identities=23%  Similarity=0.285  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh------HHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEE--ANEKLQEALMAQKRAEENS------EIEKFRAVE  177 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~iee--L~~KLE~a~~~q~qA~e~s------El~k~Ra~E  177 (313)
                      -.+|++|+++.++++-+..-|+   +--+|+|. ++.+|-.+++  ++.+++.-.    .+...+      +-.-.|+-.
T Consensus       342 d~~q~eLdK~~~~i~~Ln~~le---aReaqll~-~e~~ka~lee~~~n~~~e~~~----~k~~~s~~ssl~~e~~QRva~  413 (961)
T KOG4673|consen  342 DDVQLELDKTKKEIKMLNNALE---AREAQLLA-DEIAKAMLEEEQLNSVTEDLK----RKSNESEVSSLREEYHQRVAT  413 (961)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHhhhHHHHHH----HHhhcccccchHHHHHHHHHH
Confidence            3468889999888877777666   33344443 5777777777  666666532    222222      223456677


Q ss_pred             HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHH--------HHHHHH-HHHH-hhHHHHHHHhhhhHHHHHHH
Q 039546          178 MEQAGIEASQKKEEEWQKEIEAVRNQHALDVAS-LLSTTQ--------ELQRIK-QELA-MTTDAKNQALSHADDATKIA  246 (313)
Q Consensus       178 lEq~~~~~a~~~~~a~k~ELE~ar~qha~~~Ae-L~Sak~--------EL~klr-qEl~-~~~~ak~aA~~~AeeA~~aa  246 (313)
                      +|+-.. .+....++++.++.+.++..+..+-- +..-++        |=++|- +++. ..+.-|.-|--  .++..+-
T Consensus       414 lEkKvq-a~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~--ke~etl~  490 (961)
T KOG4673|consen  414 LEKKVQ-ALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKI--KEAETLE  490 (961)
T ss_pred             HHHHHH-HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhhHHH
Confidence            776432 23444567888888888766655432 322222        223332 2222 23333433322  2344445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 039546          247 ELHVEKVEILSSELTRLKALLDSQRETES  275 (313)
Q Consensus       247 e~~~eKveeLt~EL~~lKe~Les~~~~e~  275 (313)
                      +-+.++|..|..|..+||-.|+.+-+.|-
T Consensus       491 ~K~ge~i~~L~sE~~~lk~il~~Kee~Ek  519 (961)
T KOG4673|consen  491 EKKGELITKLQSEENKLKSILRDKEETEK  519 (961)
T ss_pred             HHhhhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            67888999999999999999998877654

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.04  E-value=4.4  Score=39.01  Aligned_cols=32  Identities=19%  Similarity=0.164  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          194 QKEIEAVRNQHALDVASLLSTTQELQRIKQEL  225 (313)
Q Consensus       194 k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl  225 (313)
                      +.++..++.+....-..+..+..++..+..++
T Consensus       209 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~  240 (423)
T TIGR01843       209 QGELGRLEAELEVLKRQIDELQLERQQIEQTF  240 (423)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.80  E-value=6.4  Score=37.54  Aligned_cols=31  Identities=23%  Similarity=0.238  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          127 ELIEKEKVQAIDELKEAQRVAEEANEKLQEA  157 (313)
Q Consensus       127 ~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a  157 (313)
                      ...+.-......+|+.++-.++.++..|...
T Consensus        20 ~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~   50 (239)
T COG1579          20 DRLEPRIKEIRKALKKAKAELEALNKALEAL   50 (239)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333345555555555555555555443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=93.69  E-value=18  Score=42.45  Aligned_cols=60  Identities=22%  Similarity=0.356  Sum_probs=27.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEE  166 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e  166 (313)
                      .+++.+|..+++++.++++.++..+. ......++......+++|...|+.....-..+.+
T Consensus       317 ~ELe~rL~kLEkQaEkA~kyleL~ee-~lr~q~ei~~l~~~LeELee~Lee~eeeLeelee  376 (1486)
T PRK04863        317 AELNEAESDLEQDYQAASDHLNLVQT-ALRQQEKIERYQADLEELEERLEEQNEVVEEADE  376 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555555444444332 1123444555555555555555555444433333

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=93.48  E-value=6.9  Score=36.90  Aligned_cols=100  Identities=20%  Similarity=0.173  Sum_probs=67.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA  185 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~  185 (313)
                      .+++.+|..++..|..+..++...+....+...++..++..++.+...|+.+           +..-.|.+.|-+.    
T Consensus        76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a-----------~~~~~r~~~L~~~----  140 (334)
T TIGR00998        76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQA-----------ELDLRRRVPLFKK----  140 (334)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHC----
Confidence            6677888899999988888888888877777777777777666666665554           2222334444221    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQE  224 (313)
Q Consensus       186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqE  224 (313)
                          ...-+.+++.++.+|....++|.++..++....+.
T Consensus       141 ----g~is~~~~~~a~~~~~~a~~~l~~~~~~~~~~~~~  175 (334)
T TIGR00998       141 ----GLISREELDHARKALLSAKAALNAAIQEQLNANQA  175 (334)
T ss_pred             ----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                12234678888888888888888777764444333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=93.47  E-value=0.021  Score=62.12  Aligned_cols=187  Identities=26%  Similarity=0.331  Sum_probs=0.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039546          102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQA  181 (313)
Q Consensus       102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~  181 (313)
                      ...+.+|+++|.-+++||..-+.--.-+|..|.....||+.-+..+++....-. ++. +....-+.|+.++| .+||..
T Consensus        38 ~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~-aq~-E~~kkrE~El~~Lr-r~LEe~  114 (859)
T PF01576_consen   38 QKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQ-AQI-ELNKKREAELAKLR-RDLEEA  114 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH-hhH-HHHHHHHHHHHHHH-HHHHHH
Confidence            457789999999999999888888888999999999998877777766654411 111 12233445777766 455432


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHhhhhHHHHHHHHHHHHH-HHHHH
Q 039546          182 GIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAM---TTDAKNQALSHADDATKIAELHVEK-VEILS  257 (313)
Q Consensus       182 ~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~---~~~ak~aA~~~AeeA~~aae~~~eK-veeLt  257 (313)
                      .        ......+..+|..|...+++|..-.+.|++.+..++-   .+......+..-=+....++.+.+| +..|-
T Consensus       115 ~--------~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE  186 (859)
T PF01576_consen  115 N--------LQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLE  186 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             H--------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHH
Confidence            1        2234667888899999999887766666655544431   1222222222222233345555555 55566


Q ss_pred             HHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546          258 SELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR  300 (313)
Q Consensus       258 ~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~  300 (313)
                      ..|..++.-++..-. .-........+|..||+.|...|+.+.
T Consensus       187 ~qL~El~~klee~er-~~~el~~~k~kL~~E~~eL~~qLee~e  228 (859)
T PF01576_consen  187 AQLNELQAKLEESER-QRNELTEQKAKLQSENSELTRQLEEAE  228 (859)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677766665554332 113333566778888888877776554

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.16  E-value=13  Score=39.31  Aligned_cols=126  Identities=21%  Similarity=0.225  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 039546          118 DLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEI  197 (313)
Q Consensus       118 EL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~EL  197 (313)
                      ||..++.-+..+...++++..|+...+-.+++|+.++++++.....+.++.--...++-+               .+.++
T Consensus        93 El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~---------------leAe~  157 (546)
T KOG0977|consen   93 ELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSE---------------LEAEI  157 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhh---------------hhhHH
Confidence            445556667777778888888888888888888888888765555555544444433333               34555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          198 EAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKA  265 (313)
Q Consensus       198 E~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe  265 (313)
                      ..++.++..---++.-.+.|..+|+.+|..+-...+..       +-.=-....++..|..||.-|+.
T Consensus       158 ~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E-------tllr~d~~n~~q~Lleel~f~~~  218 (546)
T KOG0977|consen  158 NTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE-------TLLRVDLQNRVQTLLEELAFLKR  218 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHh
Confidence            66666666666677777777777777776554433332       21122345667778878877773

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=93.15  E-value=7.9  Score=37.21  Aligned_cols=101  Identities=14%  Similarity=0.054  Sum_probs=54.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA  185 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~  185 (313)
                      .+++.+|.+++-++..++.++..++..-.....+++.++..+..+...|+.+       .    ..-.|.+.|-+.    
T Consensus        82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a-------~----~~~~R~~~L~~~----  146 (346)
T PRK10476         82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLA-------T----RTLERLEPLLAK----  146 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHC----
Confidence            4556677777777777777776655333222233333333333333333322       1    112233444221    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQEL  225 (313)
Q Consensus       186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl  225 (313)
                          ...-+.+++.++.+|..+-++|..++.++..+...+
T Consensus       147 ----g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~  182 (346)
T PRK10476        147 ----GYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAAV  182 (346)
T ss_pred             ----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                123456778888888877777777777777666544

>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species

Probab=92.69  E-value=1.8  Score=38.03  Aligned_cols=118  Identities=25%  Similarity=0.282  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHhhhhhhh
Q 039546          109 QAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVE-MEQAGIEASQ  187 (313)
Q Consensus       109 E~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~E-lEq~~~~~a~  187 (313)
                      +.||++++++|..+..++.+++.+=.....||+.|-+.+-|...|+                ..|++-. |..++.+-. 
T Consensus        14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~----------------~~~~a~~P~~~~~~~wq-   76 (136)
T PF11570_consen   14 RAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQ----------------DEFFANNPPHEYGRGWQ-   76 (136)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------CCCCTT-TTSSCHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc----------------cccccCCCccccccHHH-
Confidence            5789999999999999999888885555555555555444422222                1122211 111111111 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Q 039546          188 KKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDAT  243 (313)
Q Consensus       188 ~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~  243 (313)
                      .+=.-|+.+++.-+.+..++-.+|..+-+||..++.=+..+.+.+....++..+|.
T Consensus        77 lkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAe  132 (136)
T PF11570_consen   77 LKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAE  132 (136)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            11123666667777777788888888888888888888888888877766655543

Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.67  E-value=18  Score=39.37  Aligned_cols=186  Identities=18%  Similarity=0.287  Sum_probs=107.5

Q ss_pred             hhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLK-------KAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEM  178 (313)
Q Consensus       106 ~elE~QL~~~QeEL~-------k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~El  178 (313)
                      .-||.+|..++-||.       +++-|+..-...-..+-.||...+...|+|..||-....++++=++.....+-|+.+.
T Consensus       421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE  500 (697)
T PF09726_consen  421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE  500 (697)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457777777777764       4556666666666788889999999999999998888777777777777777676554


Q ss_pred             HHhhhhhhhhhhHHHHHHHHHHHHHHHH-----------------HHHH-HHHH----HHHHHHHHHHHHhhHHHHHHHh
Q 039546          179 EQAGIEASQKKEEEWQKEIEAVRNQHAL-----------------DVAS-LLST----TQELQRIKQELAMTTDAKNQAL  236 (313)
Q Consensus       179 Eq~~~~~a~~~~~a~k~ELE~ar~qha~-----------------~~Ae-L~Sa----k~EL~klrqEl~~~~~ak~aA~  236 (313)
                      ...        -..+..+|..-|.+...                 +.++ |..-    -.||.+|+.||-..=+.....-
T Consensus       501 ~~~--------R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e  572 (697)
T PF09726_consen  501 RRQ--------RASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELE  572 (697)
T ss_pred             HHH--------HHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321        12233333333322110                 1111 2222    2456666666655444444444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHhhh-------------hhhhH----HHHHHHHHHHHHHHHHH
Q 039546          237 SHADDATKIAELHVEKVEILSSELTRLKA---LLDSQRETE-------------SIKNR----ELVLKLEEEIDTLKEEL  296 (313)
Q Consensus       237 ~~AeeA~~aae~~~eKveeLt~EL~~lKe---~Les~~~~e-------------~~~~~----e~~~~le~e~~~L~~el  296 (313)
                      ....+....-+.+..-++.|-..|.+|++   -|+...-.|             ++..-    ..+.+=+.||..||++|
T Consensus       573 ~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki  652 (697)
T PF09726_consen  573 SELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI  652 (697)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433332223344458888889999988   344333322             21111    23555677787777776


Q ss_pred             Hhh
Q 039546          297 EKS  299 (313)
Q Consensus       297 ~ka  299 (313)
                      ...
T Consensus       653 ~~~  655 (697)
T PF09726_consen  653 AQL  655 (697)
T ss_pred             HHH
Confidence            543

; GO: 0016021 integral to membrane

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.99  E-value=7  Score=33.24  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 039546          203 QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSH  238 (313)
Q Consensus       203 qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~  238 (313)
                      .|+.++..|..++.++..++.++..+-...+.+-..
T Consensus        53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~   88 (132)
T PF07926_consen   53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAE   88 (132)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999998887776665554443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=91.95  E-value=8.2  Score=38.24  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQEL  225 (313)
Q Consensus       193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl  225 (313)
                      -+.+|+.++.+|..+-+.|..++..|...+..+
T Consensus       156 S~~~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~  188 (390)
T PRK15136        156 GREELQHARDAVASAQAQLDVAIQQYNANQAMI  188 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456888888888888888888888777766554

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=91.78  E-value=5.4  Score=37.31  Aligned_cols=95  Identities=19%  Similarity=0.284  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 039546          111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKE  190 (313)
Q Consensus       111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~  190 (313)
                      ++-.+-+|++-..--|.+-+..--++.+.++.-+..|-.|+.||..+-       --.+++.-++.-|+..        -
T Consensus       110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE-------~rAE~aERsVakLeke--------~  174 (205)
T KOG1003|consen  110 QSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE-------TRAEFAERRVAKLEKE--------R  174 (205)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHccc--------H
Confidence            334444555555555555556666777888888999999999998872       3345666788888773        2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          191 EEWQKEIEAVRNQHALDVASLLSTTQELQR  220 (313)
Q Consensus       191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~k  220 (313)
                      ..|...|...+..|.....+|+-+-++|+.
T Consensus       175 DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~  204 (205)
T KOG1003|consen  175 DDLEEKLEEAKEKYEEAKKELDETLQELEN  204 (205)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            359999999999999999998888888763

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=91.66  E-value=29  Score=39.72  Aligned_cols=168  Identities=15%  Similarity=0.150  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039546          110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQR---------VAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ  180 (313)
Q Consensus       110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr---------~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq  180 (313)
                      .+.+..+++...|+.+++.+.....++..+|+.-+.         ...+|...|..++..-..+.++......+..++..
T Consensus        58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~  137 (1109)
T PRK10929         58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISD  137 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            355666677777788888877777777777763221         13455555555544444444444444444433322


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Q 039546          181 AGIEASQKKEEEWQKEIEAVRNQ---------------HALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKI  245 (313)
Q Consensus       181 ~~~~~a~~~~~a~k~ELE~ar~q---------------ha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~a  245 (313)
                      .....++.. .+.+..|..++.+               ...--+++..-+.++..+++++...-.--+.       ...-
T Consensus       138 ~l~~~pq~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L-------~~~q  209 (1109)
T PRK10929        138 SLSQLPQQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQEL-------ARLR  209 (1109)
T ss_pred             HHhhchhhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-------HHHH
Confidence            211111211 2333444433332               2333445555555666666665533222222       2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHH
Q 039546          246 AELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKL  285 (313)
Q Consensus       246 ae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~l  285 (313)
                      -+....++..|..+|..|++.++..+-.++..+.+....+
T Consensus       210 ~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~  249 (1109)
T PRK10929        210 SELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELL  249 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677888888888888888887766665554444443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.54  E-value=8.2  Score=33.10  Aligned_cols=47  Identities=23%  Similarity=0.290  Sum_probs=38.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEA  150 (313)
Q Consensus       104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL  150 (313)
                      -+..++++|.+..-|+.-+++++...+..|..+-+|+-..-...+++
T Consensus        17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999988876655444444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=91.51  E-value=25  Score=38.67  Aligned_cols=152  Identities=22%  Similarity=0.218  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------HHH---hhhhhhhhhhHHHHHHHHHHHHHH
Q 039546          136 AIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVE--------MEQ---AGIEASQKKEEEWQKEIEAVRNQH  204 (313)
Q Consensus       136 Al~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~E--------lEq---~~~~~a~~~~~a~k~ELE~ar~qh  204 (313)
                      ++-||+++++.|..|+.+|+. .  +.|+. ..+.++.-+.|        +-.   ..+.+...+ ..+-+.+..+-+-+
T Consensus       344 ~q~eLdK~~~~i~~Ln~~lea-R--eaqll-~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~-~e~~QRva~lEkKv  418 (961)
T KOG4673|consen  344 VQLELDKTKKEIKMLNNALEA-R--EAQLL-ADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLR-EEYHQRVATLEKKV  418 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-H--HHHHH-HHHHHHHHHHHHHhhhHHHHHHHHhhcccccchH-HHHHHHHHHHHHHH
Confidence            788999999999999999983 2  22222 22333322222        100   111122222 23445555566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHhhh--hhhh
Q 039546          205 ALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDS----QRETE--SIKN  278 (313)
Q Consensus       205 a~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les----~~~~e--~~~~  278 (313)
                      -..+-+=++.+-|+..||.+++..+-.-..  .-.++-+......++|   |++++..--.-+.-    ..+.+  ....
T Consensus       419 qa~~kERDalr~e~kslk~ela~~l~~DeL--aEkdE~I~~lm~EGEk---LSK~ql~qs~iIkKLRAk~ke~etl~~K~  493 (961)
T KOG4673|consen  419 QALTKERDALRREQKSLKKELAAALLKDEL--AEKDEIINQLMAEGEK---LSKKQLAQSAIIKKLRAKIKEAETLEEKK  493 (961)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence            677778889999999999999876655111  1122222222223333   34333221111111    11222  2445


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 039546          279 RELVLKLEEEIDTLKEELE  297 (313)
Q Consensus       279 ~e~~~~le~e~~~L~~el~  297 (313)
                      .+.|.+|++|...|+.=|-
T Consensus       494 ge~i~~L~sE~~~lk~il~  512 (961)
T KOG4673|consen  494 GELITKLQSEENKLKSILR  512 (961)
T ss_pred             hhHHHHHHHHHHHHHHHhh
Confidence            5788888888887776553

>PRK09039 hypothetical protein; Validated

Probab=91.50  E-value=15  Score=36.20  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546          191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT  228 (313)
Q Consensus       191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~  228 (313)
                      .....+|...+..|+..-..+....+||..||.+++.+
T Consensus       119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l  156 (343)
T PRK09039        119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL  156 (343)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            44668889999999999999999999999999996654

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.96  E-value=15  Score=35.07  Aligned_cols=40  Identities=13%  Similarity=0.214  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039546          191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTD  230 (313)
Q Consensus       191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~  230 (313)
                      .++..++..++.|-...--+|.-+.++++++..+...+.+
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~  131 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE  131 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777776666666667777766666654433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=90.70  E-value=41  Score=39.68  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039546          192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKN  233 (313)
Q Consensus       192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~  233 (313)
                      ....+|+..+.++.....++....+++..++.++.......+
T Consensus       366 e~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~  407 (1486)
T PRK04863        366 EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD  407 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555566666666666666666655433333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=90.59  E-value=21  Score=36.03  Aligned_cols=41  Identities=17%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546          191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDA  231 (313)
Q Consensus       191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~a  231 (313)
                      ...+.+|.....+|..+--.+...+.+|..++.++...+..
T Consensus       257 ~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~  297 (498)
T TIGR03007       257 EALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSA  297 (498)
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccc
Confidence            34677888888889888888899999999999998766543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.48  E-value=37  Score=38.75  Aligned_cols=28  Identities=18%  Similarity=0.400  Sum_probs=16.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEK  133 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~K  133 (313)
                      .+.|.||.-.|.||..+-++|...++..
T Consensus       680 ~~~~~~~~~~q~el~~le~eL~~le~~~  707 (1174)
T KOG0933|consen  680 KQAQKELRAIQKELEALERELKSLEAQS  707 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666555543

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=90.31  E-value=18  Score=34.85  Aligned_cols=29  Identities=21%  Similarity=0.245  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          196 EIEAVRNQHALDVASLLSTTQELQRIKQE  224 (313)
Q Consensus       196 ELE~ar~qha~~~AeL~Sak~EL~klrqE  224 (313)
                      ++..++.+|...-.+|..+..+|..++.+
T Consensus       197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~  225 (423)
T TIGR01843       197 ELLELERERAEAQGELGRLEAELEVLKRQ  225 (423)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=89.98  E-value=5.3  Score=32.01  Aligned_cols=68  Identities=25%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHhhhhhhhHHHHHHHHHHHHHHHH
Q 039546          218 LQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKA---LLDSQRETESIKNRELVLKLEEEIDTLKE  294 (313)
Q Consensus       218 L~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe---~Les~~~~e~~~~~e~~~~le~e~~~L~~  294 (313)
                      |..||.||+.+..+-+..-.+.       ..-.-|+.-=-.|+..++.   .|+..|       ..+-.+-|+||..||.
T Consensus         6 Ld~ir~Ef~~~~~e~~~~k~~~-------~e~e~ki~~Qi~Em~~ir~~v~eLE~~h-------~kmK~~YEeEI~rLr~   71 (79)
T PF08581_consen    6 LDAIRQEFENLSQEANSYKHQK-------DEYEHKINSQIQEMQQIRQKVYELEQAH-------RKMKQQYEEEIARLRR   71 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            4566666666554443322222       2233444444557777777   455555       5778889999999999


Q ss_pred             HHHhh
Q 039546          295 ELEKS  299 (313)
Q Consensus       295 el~ka  299 (313)
                      +|+.-
T Consensus        72 eLe~r   76 (79)
T PF08581_consen   72 ELEQR   76 (79)
T ss_dssp             HHCHH
T ss_pred             HHHhh
Confidence            99864

; PDB: 3VP9_B 3VP8_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.85  E-value=7.2  Score=38.07  Aligned_cols=60  Identities=18%  Similarity=0.276  Sum_probs=17.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIE------KEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE  165 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE------~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~  165 (313)
                      ..++.+++.++.|...|..-|...+      ..-.....|+...+....+|...|+....+.....
T Consensus        12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~   77 (314)
T PF04111_consen   12 EQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELD   77 (314)
T ss_dssp             ------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777777777766665544      22344555666666666666666665544443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=89.74  E-value=42  Score=38.32  Aligned_cols=106  Identities=16%  Similarity=0.218  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 039546          193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRE  272 (313)
Q Consensus       193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~  272 (313)
                      .+..|-.+..+-.....+-..-..|++-+++.++++.-+.+..--.=.++......-...+..|...|..+++.++-...
T Consensus       314 ~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~  393 (1074)
T KOG0250|consen  314 ARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELG  393 (1074)
T ss_pred             HhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            33333444444444445555556666666666666655554433333344433444444577777777777777644333


Q ss_pred             hhhhh-------hHHHHHHHHHHHHHHHHHHHh
Q 039546          273 TESIK-------NRELVLKLEEEIDTLKEELEK  298 (313)
Q Consensus       273 ~e~~~-------~~e~~~~le~e~~~L~~el~k  298 (313)
                      ++--+       -...|.+++..+..|+.+++.
T Consensus       394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~  426 (1074)
T KOG0250|consen  394 SELEERENKLEQLKKEVEKLEEQINSLREELNE  426 (1074)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222       224566677777777777654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.65  E-value=35  Score=37.23  Aligned_cols=108  Identities=21%  Similarity=0.288  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hh--hhhhhh
Q 039546          112 LNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQ-AG--IEASQK  188 (313)
Q Consensus       112 L~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq-~~--~~~a~~  188 (313)
                      ++++.++|   +.++......+.+=+.+|...+..++.++.+-+....-=..+.+..+.=..|+..+=+ ..  .-....
T Consensus       556 ~~~ar~ei---~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~  632 (717)
T PF10168_consen  556 QDLAREEI---QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSE  632 (717)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence            45556655   4455555555666555555555555554333332222222223333333334433311 11  112234


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          189 KEEEWQKEIEAVRNQHALDVASLLSTTQELQRIK  222 (313)
Q Consensus       189 ~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klr  222 (313)
                      .+..|+.||+.++.+...--+.|..++.-+++.+
T Consensus       633 AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~  666 (717)
T PF10168_consen  633 AEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ  666 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999888876554455555555554433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.42  E-value=26  Score=35.51  Aligned_cols=58  Identities=12%  Similarity=0.107  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546          210 SLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR  271 (313)
Q Consensus       210 eL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~  271 (313)
                      .+....+++..++.++..+-+.....-    ....-......++.+|..+|...+..|++..
T Consensus       300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~----~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~  357 (562)
T PHA02562        300 RITKIKDKLKELQHSLEKLDTAIDELE----EIMDEFNEQSKKLLELKNKISTNKQSLITLV  357 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666666665554444211    1122233345566666666666666665543

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=89.32  E-value=16  Score=32.99  Aligned_cols=118  Identities=16%  Similarity=0.212  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA  185 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~  185 (313)
                      .-|+..|--++++|.+++..+...-+.+.+.-.+++.+.+.+.++..+.+.|...-     .-++++.-+.+....    
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g-----~edLAr~al~~k~~~----   96 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG-----REDLAREALQRKADL----   96 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH----
Confidence            55677888999999999999999999999999999999999999998888774332     234444443333221    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039546          186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKN  233 (313)
Q Consensus       186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~  233 (313)
                       ...-...+..++.+..+....-..|......|..++....+++.-..
T Consensus        97 -e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~  143 (221)
T PF04012_consen   97 -EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN  143 (221)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11123355555555555555555566666666666666665544333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=89.06  E-value=19  Score=33.48  Aligned_cols=54  Identities=19%  Similarity=0.255  Sum_probs=44.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA  157 (313)
Q Consensus       104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a  157 (313)
                      -+.+|+..=-.++.+..+++..++.+|-.-++...|+...++.+-.+.+=|+.+
T Consensus         9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a   62 (193)
T PF14662_consen    9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA   62 (193)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777789999999999999999999999999988888887776555544

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=88.33  E-value=53  Score=37.59  Aligned_cols=25  Identities=16%  Similarity=0.384  Sum_probs=17.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIE  130 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE  130 (313)
                      ..++..|.-++++++.+++.+.+.+
T Consensus       231 ~~~~e~i~~l~k~i~e~~e~~~~~~  255 (1074)
T KOG0250|consen  231 DLKEEEIKNLKKKIKEEEEKLDNLE  255 (1074)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            6677777777777777777776443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=88.25  E-value=68  Score=38.75  Aligned_cols=163  Identities=20%  Similarity=0.219  Sum_probs=103.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh--h
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAG--I  183 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~--~  183 (313)
                      .++..|=..++.|++.++.+|......+..+..+++.-+.++..|+.--...+..+.+++...+-.+.++..+....  .
T Consensus        69 ~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l  148 (1822)
T KOG4674|consen   69 SDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDL  148 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555667888999999999999999999999999999999999999888888889999988888777766665532  1


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHH
Q 039546          184 EASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALS-----HADDATKIAELHVEKVEILSS  258 (313)
Q Consensus       184 ~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~-----~AeeA~~aae~~~eKveeLt~  258 (313)
                      +...........++++...+|..   ...+..-++.++-|+++++.....+ |.     ..+.=...-..+..-+.+|..
T Consensus       149 ~~ql~ss~~~~~e~e~r~~e~~s---~~vs~q~k~~rl~QEksll~s~~~w-L~~eL~~~~ekll~~~re~s~~~~~L~~  224 (1822)
T KOG4674|consen  149 NDQLKSSTKTLSELEARLQETQS---EDVSSQLKEERLEQEKSLLESENKW-LSRELSKVNEKLLSLRREHSIEVEQLEE  224 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            11111122334455555555544   3444666677777777665443322 11     111111122223333556666


Q ss_pred             HHHHHHHHhhhhHh
Q 039546          259 ELTRLKALLDSQRE  272 (313)
Q Consensus       259 EL~~lKe~Les~~~  272 (313)
                      .|..++..+....+
T Consensus       225 ~L~~~~~~~~~~q~  238 (1822)
T KOG4674|consen  225 KLSDLKESLAELQE  238 (1822)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666655553

>PRK09039 hypothetical protein; Validated

Probab=88.03  E-value=29  Score=34.28  Aligned_cols=49  Identities=16%  Similarity=0.201  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546          251 EKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKSR  300 (313)
Q Consensus       251 eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~  300 (313)
                      -.|..|..+|.+|+..|..-.+.= ...-+........|..|..+|+.|.
T Consensus       137 ~~V~~L~~qI~aLr~Qla~le~~L-~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        137 AQVELLNQQIAALRRQLAALEAAL-DASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346666666666666543332100 1111223455555566666665553

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=87.68  E-value=59  Score=37.40  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=22.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDEL-------KEAQRVAEEAN  151 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~EL-------E~AKr~ieeL~  151 (313)
                      .+||.+|.+++.+|...++++...-.--.++.+-+       ..+++.+.+.+
T Consensus       105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~  157 (1109)
T PRK10929        105 DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIE  157 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHH
Confidence            55555555555555555555554433333333333       44555555555

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=87.62  E-value=50  Score=36.53  Aligned_cols=58  Identities=17%  Similarity=0.200  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546          110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEEN  167 (313)
Q Consensus       110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~  167 (313)
                      .+..-.+..|..+|+.|...+..+...+.|.+.-+--+++.+.-|+..+..-..+.+.
T Consensus       315 ~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE  372 (775)
T PF10174_consen  315 EQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE  372 (775)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444557788888999999999998888888777777777777777765444334333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.34  E-value=60  Score=37.15  Aligned_cols=51  Identities=27%  Similarity=0.321  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 039546          247 ELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEK  298 (313)
Q Consensus       247 e~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~~~L~~el~k  298 (313)
                      +....|++.|..||-..+..+.+.- .+.....+.+..+..++..|+..|..
T Consensus       416 k~a~~k~e~~~~elk~~e~e~~t~~-~~~~~~~~~ld~~q~eve~l~~~l~~  466 (1174)
T KOG0933|consen  416 KQAKLKLEHLRKELKLREGELATAS-AEYVKDIEELDALQNEVEKLKKRLQS  466 (1174)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445556666666666555554433 12222224455555555555555543

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.29  E-value=28  Score=34.29  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=61.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039546          102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQA  181 (313)
Q Consensus       102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~  181 (313)
                      ..||.++|.||+++.+|-..-.=||++.|++       |.+.|+.+++-+.+.-...-+-...++..+-..-.-+-|...
T Consensus        17 LqKIqelE~QldkLkKE~qQrQfQleSlEAa-------LqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd   89 (307)
T PF10481_consen   17 LQKIQELEQQLDKLKKERQQRQFQLESLEAA-------LQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHD   89 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence            5689999999999999999999999999986       444555555544443333333333333333222222222221


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          182 GIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQEL  225 (313)
Q Consensus       182 ~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl  225 (313)
                      .. .-...=.-+.-+|.+.+.+-..--.+|.--+.||++.++..
T Consensus        90 lq-~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~  132 (307)
T PF10481_consen   90 LQ-VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA  132 (307)
T ss_pred             Hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            00 00000011233455555555555555555555555544443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=87.22  E-value=57  Score=36.78  Aligned_cols=21  Identities=14%  Similarity=0.098  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q 039546          281 LVLKLEEEIDTLKEELEKSRT  301 (313)
Q Consensus       281 ~~~~le~e~~~L~~el~ka~~  301 (313)
                      .+.++..++..+..+......
T Consensus       861 ~~~~~~~~~~~~~~~~~~~~~  881 (1047)
T PRK10246        861 QQQALMQQIAQATQQVEDWGY  881 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555544443333

>PRK03918 chromosome segregation protein; Provisional

Probab=86.91  E-value=49  Score=35.64  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQE  224 (313)
Q Consensus       192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqE  224 (313)
                      .|+.+++....+|..--..+.....+|..+..+
T Consensus       242 ~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~  274 (880)
T PRK03918        242 ELEKELESLEGSKRKLEEKIRELEERIEELKKE  274 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555544433343344443333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=86.66  E-value=45  Score=34.96  Aligned_cols=57  Identities=16%  Similarity=0.143  Sum_probs=33.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 039546          104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAID-------ELKEAQRVAEEANEKLQEALMA  160 (313)
Q Consensus       104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~-------ELE~AKr~ieeL~~KLE~a~~~  160 (313)
                      ....++..+..+++.|..+-+.++.-..+|..|..       .|..++.....|...++..+.+
T Consensus       276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s  339 (569)
T PRK04778        276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS  339 (569)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34555566666666666666666666666555554       4555555555555555555433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.44  E-value=49  Score=35.23  Aligned_cols=65  Identities=17%  Similarity=0.241  Sum_probs=41.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546          103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEEN  167 (313)
Q Consensus       103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~  167 (313)
                      .+.++++.+++.++-.++.+-+.+.-.-..-.+.-.+|..++.++++-..---+.+..-+-..+.
T Consensus       148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee  212 (546)
T KOG0977|consen  148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE  212 (546)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45577777777777777777777777777777777777777776666554333333333333333

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=86.26  E-value=5.7  Score=30.94  Aligned_cols=56  Identities=23%  Similarity=0.142  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039546          209 ASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQR  271 (313)
Q Consensus       209 AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~  271 (313)
                      ..|+++...+......+..+..+++.++.+..+|.       .....|..|+.+++..|+..+
T Consensus        12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~-------~e~~~Lk~E~e~L~~el~~~r   67 (69)
T PF14197_consen   12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAY-------EENNKLKEENEALRKELEELR   67 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence            34566667777777788888888888888887776       455668888888888877654

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=86.23  E-value=27  Score=32.07  Aligned_cols=107  Identities=19%  Similarity=0.205  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMT--------TDAKNQALSHADDATKIAELHVEKVEILSSELTR  262 (313)
Q Consensus       191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~--------~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~  262 (313)
                      ..|+..|-..+.++-.....|.-+-.||.+++.++..+        +.+++.-..+-+.+......+..++..|...|.-
T Consensus        71 r~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL  150 (194)
T PF15619_consen   71 RVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLEL  150 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888888888888888887777777777777666542        2233333444555555566666777777665555


Q ss_pred             HHHHhhhhHhhhh---hhhHHHHHHHHHHHHHHHHHHH
Q 039546          263 LKALLDSQRETES---IKNRELVLKLEEEIDTLKEELE  297 (313)
Q Consensus       263 lKe~Les~~~~e~---~~~~e~~~~le~e~~~L~~el~  297 (313)
                      ....+.--...+.   .++-..+..|..||..|++.|.
T Consensus       151 ~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk  188 (194)
T PF15619_consen  151 ENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK  188 (194)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444443333332   2333567777777777777664

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=85.90  E-value=77  Score=36.94  Aligned_cols=44  Identities=25%  Similarity=0.291  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEK  153 (313)
Q Consensus       110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~K  153 (313)
                      .|...+|.+++.+-+++...+..|..+..++-.-++.++++..+
T Consensus       487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~  530 (1317)
T KOG0612|consen  487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKK  530 (1317)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556777788887787777777766655444444444444333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=85.59  E-value=47  Score=34.27  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546          110 AQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEEN  167 (313)
Q Consensus       110 ~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~  167 (313)
                      .+|+++|.||.+....+........+...+|...+..+..+.+.|-+....-.....+
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~   95 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ   95 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence            5666777777777666666666667777777777766666666666655444443333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=85.29  E-value=57  Score=34.92  Aligned_cols=33  Identities=6%  Similarity=0.172  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546          195 KEIEAVRNQHALDVASLLSTTQELQRIKQELAM  227 (313)
Q Consensus       195 ~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~  227 (313)
                      .++.....+|...--.+..++.+|..++.++..
T Consensus       302 ~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~  334 (754)
T TIGR01005       302 ATIADLSTTMLANHPRVVAAKSSLADLDAQIRS  334 (754)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            333344445555555566667777777766644

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=85.20  E-value=26  Score=34.84  Aligned_cols=114  Identities=20%  Similarity=0.280  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIE------------KEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKF  173 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE------------~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~  173 (313)
                      .+|...|.-+|.|++-+++++..-.            ..|.+.+..||.++.++..|...|.....+..-++..-...+.
T Consensus        89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~  168 (319)
T PF09789_consen   89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKC  168 (319)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666677777888887888776643            4678899999999999999999999999999888888888887


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039546          174 RAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQ  234 (313)
Q Consensus       174 Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~a  234 (313)
                      .+.-|-+               ||..+=.-+..-+.++++.-.|-+-|+..+..+-++++.
T Consensus       169 K~~RLN~---------------ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l  214 (319)
T PF09789_consen  169 KAHRLNH---------------ELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKEL  214 (319)
T ss_pred             HHHHHHH---------------HHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766533               222222223334445555566666666655555555544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=85.04  E-value=0.27  Score=53.74  Aligned_cols=52  Identities=37%  Similarity=0.424  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIEL--------IEKEKVQAIDELKEAQRVAEEANEKLQEA  157 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~--------AE~~KaqAl~ELE~AKr~ieeL~~KLE~a  157 (313)
                      .+++.+|..++.+|..+|.+++.        .|..|.+...+|..+...++++..+....
T Consensus       288 ~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~L  347 (859)
T PF01576_consen  288 SELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSL  347 (859)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555544443332        34444444444444444444444444333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.92  E-value=12  Score=33.64  Aligned_cols=35  Identities=11%  Similarity=0.109  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546          197 IEAVRNQHALDVASLLSTTQELQRIKQELAMTTDA  231 (313)
Q Consensus       197 LE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~a  231 (313)
                      ++.++..|.+--..+.++-+.+.+|+.|...+|+-
T Consensus       146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVER  180 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555777777777777776653

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK11281 hypothetical protein; Provisional

Probab=84.69  E-value=82  Score=36.26  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQ  144 (313)
Q Consensus       111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AK  144 (313)
                      +....++++..++.++..+...-.++..+|+.-|
T Consensus        74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk  107 (1113)
T PRK11281         74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALK  107 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            4444555555555555555555555555555433

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=84.68  E-value=63  Score=34.94  Aligned_cols=89  Identities=24%  Similarity=0.393  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH-HHHH-HHH-HHHHHHHHHHHHHHhhhhHhhhhhh--hH-HHHHHHHH
Q 039546          214 TTQELQRIKQELAMTTDAKNQALSHADDATKI-AELH-VEK-VEILSSELTRLKALLDSQRETESIK--NR-ELVLKLEE  287 (313)
Q Consensus       214 ak~EL~klrqEl~~~~~ak~aA~~~AeeA~~a-ae~~-~eK-veeLt~EL~~lKe~Les~~~~e~~~--~~-e~~~~le~  287 (313)
                      +-.|...|+.++..+......+  +.++-... ...+ .++ +-.|+.+|.+++.++--..++-...  +. ..+...-+
T Consensus       254 lE~e~e~L~~ql~~~N~~~~~~--~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~  331 (629)
T KOG0963|consen  254 LEREVEQLREQLAKANSSKKLA--KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKIS  331 (629)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhc--cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666555554444  11111111 1111 122 5557777777777766555322211  11 12233334


Q ss_pred             HHHHHHHHHHhhhhHhH
Q 039546          288 EIDTLKEELEKSRTFGK  304 (313)
Q Consensus       288 e~~~L~~el~ka~~~e~  304 (313)
                      ++..|+.+|++-.++++
T Consensus       332 ~leel~~kL~~~sDYee  348 (629)
T KOG0963|consen  332 ELEELKEKLNSRSDYEE  348 (629)
T ss_pred             HHHHHHHHHhhhccHHH
Confidence            44455555555555543

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=84.32  E-value=30  Score=30.83  Aligned_cols=21  Identities=38%  Similarity=0.574  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 039546          280 ELVLKLEEEIDTLKEELEKSR  300 (313)
Q Consensus       280 e~~~~le~e~~~L~~el~ka~  300 (313)
                      ++-.++..+|..||.+|++.|
T Consensus       131 e~~~ki~~ei~~lr~~iE~~K  151 (177)
T PF07798_consen  131 ELNNKIDTEIANLRTEIESLK  151 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455667777778888887765

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=84.21  E-value=54  Score=33.72  Aligned_cols=92  Identities=15%  Similarity=0.285  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039546          109 QAQLNLVQEDLKKAK-------EKIELIEKEKVQAIDELKEAQR-------VAEEANEKLQEALMAQKRAEENSEIEKFR  174 (313)
Q Consensus       109 E~QL~~~QeEL~k~K-------eQl~~AE~~KaqAl~ELE~AKr-------~ieeL~~KLE~a~~~q~qA~e~sEl~k~R  174 (313)
                      +++|+.+..=+..||       -+|..+|.-..+++.+||.-+.       .=|||+.-|+.-   +.|..+..|++...
T Consensus        85 ~spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKE---ReqL~QQiEFe~~e  161 (561)
T KOG1103|consen   85 ESPLDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKE---REQLQQQIEFEIEE  161 (561)
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHH---HHHHHHHHHHHHHH
Confidence            345555555555554       4788899999999999986442       236888888875   77777888887776


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039546          175 AVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASL  211 (313)
Q Consensus       175 a~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL  211 (313)
                      .+..|.+     +   .-+..+|+.-+.||...+.-|
T Consensus       162 ~kK~E~~-----k---~Kl~~qLeeEk~RHeqis~mL  190 (561)
T KOG1103|consen  162 KKKAEIA-----K---DKLEMQLEEEKKRHEQISLML  190 (561)
T ss_pred             HHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHH
Confidence            6665543     2   236678899999998766544

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.07  E-value=33  Score=34.44  Aligned_cols=99  Identities=19%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039546          191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQ  270 (313)
Q Consensus       191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~  270 (313)
                      ..|+.-|+.++..+......|.-++..|.+|..++...++.=..--++          -...++.|-.|....+..|...
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~----------iN~qle~l~~eYr~~~~~ls~~  285 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY----------INNQLEPLIQEYRSAQDELSEV  285 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHH
Confidence            569999999999999999999999999999999998877642221111          1123444555555555555544


Q ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 039546          271 RETESIKNRELVLKLEEEIDTLKEELEKSR  300 (313)
Q Consensus       271 ~~~e~~~~~e~~~~le~e~~~L~~el~ka~  300 (313)
                      .+.=.. ...-|..+..++..+..+|+..|
T Consensus       286 ~~~y~~-~s~~V~~~t~~L~~IseeLe~vK  314 (359)
T PF10498_consen  286 QEKYKQ-ASEGVSERTRELAEISEELEQVK  314 (359)
T ss_pred             HHHHHH-HhhHHHHHHHHHHHHHHHHHHHH
Confidence            432111 11334444444444545554443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=84.02  E-value=81  Score=35.63  Aligned_cols=42  Identities=14%  Similarity=0.221  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          113 NLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL  154 (313)
Q Consensus       113 ~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL  154 (313)
                      ..++.-+..|+-|+..-+.+=.++..+++++.-..+-|...|
T Consensus       354 ~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~el  395 (980)
T KOG0980|consen  354 EEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNEL  395 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555554444444333

>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised

Probab=83.65  E-value=6.2  Score=33.65  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=44.7

Q ss_pred             cchhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          103 VKGSELQAQLNLVQ--------EDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE  156 (313)
Q Consensus       103 ~~~~elE~QL~~~Q--------eEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~  156 (313)
                      -++.+||.+|.+++        -+|.+||+.-...=..+.-.-..|.+++..+.+.+.||-.
T Consensus         7 lrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl~   68 (111)
T PF12001_consen    7 LRIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLLV   68 (111)
T ss_pred             HHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            46889999999887        6788998887777777777788999999999999988854

This domain is found in eukaryotes. This domain is about 110 amino acids in length.

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=82.92  E-value=55  Score=32.86  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 039546          191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELH  249 (313)
Q Consensus       191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~  249 (313)
                      ..++++++.++..+..+-++|..+.+....-...+..........+..|..+...++.+
T Consensus       147 ~vs~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~  205 (352)
T COG1566         147 VVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQAKLD  205 (352)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHH
Confidence            34678899999999888899988886666666666666666666666666666555543

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=82.89  E-value=33  Score=30.28  Aligned_cols=40  Identities=18%  Similarity=0.298  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039546          191 EEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTD  230 (313)
Q Consensus       191 ~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~  230 (313)
                      ..+.++|+.++..+...+.+.-.++.|+..|+.++..+..
T Consensus        27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~   66 (140)
T PF10473_consen   27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTS   66 (140)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466677777777777777777777777776666655433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=82.88  E-value=45  Score=31.81  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA  185 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~  185 (313)
                      .+++.+|..++..+..++.++........  ..+++.++..++.++..|+.+           +..-.|.+.|-+.+   
T Consensus        77 ~~~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a-----------~~~~~r~~~L~~~g---  140 (331)
T PRK03598         77 APYENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYA-----------QNFYNRQQGLWKSR---  140 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCC---
Confidence            56678888888888888888877654432  234555555555444444443           12223334442221   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          186 SQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIK  222 (313)
Q Consensus       186 a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klr  222 (313)
                           ..-+.+++.++..|..+.+.+..++..+..++
T Consensus       141 -----~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  172 (331)
T PRK03598        141 -----TISANDLENARSSRDQAQATLKSAQDKLSQYR  172 (331)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 12345677777777777777777776666554

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=82.80  E-value=43  Score=31.61  Aligned_cols=49  Identities=31%  Similarity=0.464  Sum_probs=32.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL  154 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL  154 (313)
                      .+++.+|-++++++.+++..|..++..-...-.++..+......|..+-
T Consensus         8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~   56 (246)
T PF00769_consen    8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKR   56 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888888888887777655544444444444444444443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=82.76  E-value=81  Score=34.70  Aligned_cols=154  Identities=16%  Similarity=0.227  Sum_probs=97.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 039546          102 LVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQA  181 (313)
Q Consensus       102 ~~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~  181 (313)
                      +.|-..+..+|..+|.||+.++-.+.+.-++.-+...       ...+|....+.......+.+.+.-=.|||-..|=+.
T Consensus        26 a~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~-------~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~d   98 (717)
T PF09730_consen   26 ASKEAYLQQRILELENELKQLRQELSNVQAENERLSQ-------LNQELRKECEDLELERKRLREEIKEYKFREARLLQD   98 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3455677788888888888888888776555544333       333333333333333333333222223332221111


Q ss_pred             hhhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039546          182 GIEASQKKEEEWQKEIEAVRN---QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSS  258 (313)
Q Consensus       182 ~~~~a~~~~~a~k~ELE~ar~---qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~  258 (313)
                       +..-.+.+-.++..+-+.|.   .|...--++..-.+|++-|+.+++.++.=|+++-+|-+||..+.+..-+.=..|..
T Consensus        99 -yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~Lrk  177 (717)
T PF09730_consen   99 -YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRK  177 (717)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11112223445555555444   46676777888888999999999999999999999999999998877777778899


Q ss_pred             HHHHH
Q 039546          259 ELTRL  263 (313)
Q Consensus       259 EL~~l  263 (313)
                      ||...
T Consensus       178 EL~~~  182 (717)
T PF09730_consen  178 ELDQH  182 (717)
T ss_pred             HHHHh
Confidence            98883

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=82.72  E-value=44  Score=31.61  Aligned_cols=28  Identities=4%  Similarity=-0.079  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          192 EWQKEIEAVRNQHALDVASLLSTTQELQ  219 (313)
Q Consensus       192 a~k~ELE~ar~qha~~~AeL~Sak~EL~  219 (313)
                      .-+.+++.++.+|...-++|..+..++.
T Consensus       132 iS~~~~d~~~~~~~~a~~~l~~~~~~~~  159 (327)
T TIGR02971       132 VSASDLDSKALKLRTAEEELEEALASRS  159 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666665555555544443

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=82.69  E-value=84  Score=34.83  Aligned_cols=158  Identities=25%  Similarity=0.280  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHH
Q 039546          107 ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQ-RVAE----EANEKLQEALMAQ-KRAEENSEIEKFRAVEMEQ  180 (313)
Q Consensus       107 elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AK-r~ie----eL~~KLE~a~~~q-~qA~e~sEl~k~Ra~ElEq  180 (313)
                      -++.++..+-.-|++|-+||-.+.-..-|-+.|.=--+ +..+    +|..+|.+....- ..+.+...+.+. +.+-+.
T Consensus        42 ~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~-l~~~~~  120 (769)
T PF05911_consen   42 ALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKA-LQEKEK  120 (769)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Confidence            34555666667788888888888877777666543222 1222    2333333331111 011111111110 011111


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039546          181 AGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSEL  260 (313)
Q Consensus       181 ~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL  260 (313)
                      . |....+.-.....++.....+....--+-.+-+.||.-+.++|+.-.++++-..+-|+-|.+-=-...+||--|-.|-
T Consensus       121 ~-i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC  199 (769)
T PF05911_consen  121 L-IAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAEC  199 (769)
T ss_pred             H-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 111122223344455555555555555555688888888888888888888888888888776667788888888887


Q ss_pred             HHHHHH
Q 039546          261 TRLKAL  266 (313)
Q Consensus       261 ~~lKe~  266 (313)
                      .||+..
T Consensus       200 ~rLr~l  205 (769)
T PF05911_consen  200 QRLRAL  205 (769)
T ss_pred             HHHHHH
Confidence            666653

The function of this family is unknown.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=81.22  E-value=1.4e+02  Score=36.32  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039546          193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAM  227 (313)
Q Consensus       193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~  227 (313)
                      ++.+|+..+..|...-+.=..+..|+..++++...
T Consensus      1420 l~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~ 1454 (1822)
T KOG4674|consen 1420 LKEELEELQQLQATLQSETEAITKELFEAKKEEEK 1454 (1822)
T ss_pred             HHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            44555555555555555555555555555555555

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=81.00  E-value=1.1e+02  Score=35.11  Aligned_cols=175  Identities=18%  Similarity=0.197  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhh------------h
Q 039546          119 LKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEA------------S  186 (313)
Q Consensus       119 L~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~------------a  186 (313)
                      ++.+.+|+...+..+..++..|.+-+..|.+-..+|....-.-......-.--+.|+..+++...++            .
T Consensus       309 ~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk  388 (1200)
T KOG0964|consen  309 IKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSK  388 (1200)
T ss_pred             hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcH
Confidence            4455566677777777788888888888888888777765444333443444455556665522111            1


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          187 QKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKAL  266 (313)
Q Consensus       187 ~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~  266 (313)
                      .++|.-.+.+++       .-...+...+.....|+.+|+.+-.....-+.+-.+=...-..+.-+|+++..+++.+|..
T Consensus       389 ~eRDkwir~ei~-------~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~  461 (1200)
T KOG0964|consen  389 EERDKWIRSEIE-------KLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRE  461 (1200)
T ss_pred             HHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHH
Confidence            334433344444       4445555666666677777666543333333333333333345666788888888888888


Q ss_pred             hhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 039546          267 LDSQRETESIKNRELVLKLEEEIDTLKEELEKSRT  301 (313)
Q Consensus       267 Les~~~~e~~~~~e~~~~le~e~~~L~~el~ka~~  301 (313)
                      +|-..+.. +...-.=.+|...|..|+.+|..++.
T Consensus       462 ~del~~~R-k~lWREE~~l~~~i~~~~~dl~~~~~  495 (1200)
T KOG0964|consen  462 LDELQDKR-KELWREEKKLRSLIANLEEDLSRAEK  495 (1200)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87766433 33333456777777788877777654

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=80.54  E-value=52  Score=31.06  Aligned_cols=49  Identities=27%  Similarity=0.409  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          115 VQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKR  163 (313)
Q Consensus       115 ~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~q  163 (313)
                      +..+...|.++|...+..-.++..+|..+..++..|-.++..++.+...
T Consensus         3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~   51 (246)
T PF00769_consen    3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEE   51 (246)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566788888888888888889999999999999888888665543

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=80.26  E-value=63  Score=31.79  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 039546          191 EEWQKEIEAVRNQHAL----DVASLLSTTQELQRIKQEL  225 (313)
Q Consensus       191 ~a~k~ELE~ar~qha~----~~AeL~Sak~EL~klrqEl  225 (313)
                      ..++.++...++....    |-.+|..++++|..+..++
T Consensus       182 ~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei  220 (312)
T smart00787      182 DALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEI  220 (312)
T ss_pred             HHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3455555555544333    3444555554444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-05
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	9e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 4/197 (2%)

Query: 107  ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEE 166
                ++  +++D+   +++   + KE+    + + +      E  EK +  L   K   E
Sbjct: 980  TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN-LTKLKNKHE 1038

Query: 167  NSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELA 226
            +   E    ++ E+   +  +K + + + E   +  Q A   A +     +L + ++EL 
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098

Query: 227  MTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLD---SQRETESIKNRELVL 283
                      S  ++A K        +  L  +L   KA  +    Q+   S +   L  
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKT 1158

Query: 284  KLEEEIDTLKEELEKSR 300
            +LE+ +DT   + E   
Sbjct: 1159 ELEDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 5e-10
 Identities = 40/224 (17%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 96   EKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEK---EKVQAIDELKEAQRVAEEANE 152
            E       +  E + +   +Q + KK ++++  +E+   E+  A  +L+  +  A+   +
Sbjct: 927  EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986

Query: 153  KLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLL 212
            K+++ ++  +        E+ + +E   + +  +  +EEE  K +  ++N+H   ++ L 
Sbjct: 987  KMEDDILIMEDQNNKLTKER-KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045

Query: 213  STTQELQRIKQEL-----AMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALL 267
               ++ ++ +QEL      +  ++ +     A+   +IAEL   ++     EL    A L
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK-AQLAKKEEELQAALARL 1104

Query: 268  DSQRETESIKNRELVLKLEEEIDTLKEELEKSRTFGKKINGKRS 311
            + +   ++   +++  +LE  I  L+E+LE  +    K   ++ 
Sbjct: 1105 EDETSQKNNALKKI-RELESHISDLQEDLESEKAARNKAEKQKR 1147

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.0 bits (135), Expect = 6e-09
 Identities = 39/205 (19%), Positives = 86/205 (41%), Gaps = 9/205 (4%)

Query: 96   EKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQ 155
            E+ Q++  +    + +    + +LK+ ++K   + +EK    ++L+    +  EA E  +
Sbjct: 857  EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM-R 915

Query: 156  EALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTT 215
              L A+K+  E    E    +E E+   +  Q ++++ Q+++  +  Q    +    +  
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ----LEEEEAAR 971

Query: 216  QELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETES 275
            Q+LQ  K             +   +D  +  +L  E+ ++L   ++ L   L  + E   
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMED--QNNKLTKER-KLLEERVSDLTTNLAEEEEKAK 1028

Query: 276  IKNRELVLKLEEEIDTLKEELEKSR 300
                +L  K E  I  L+  L+K  
Sbjct: 1029 -NLTKLKNKHESMISELEVRLKKEE 1052

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 37/187 (19%), Positives = 80/187 (42%), Gaps = 15/187 (8%)

Query: 107  ELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKR--- 163
             L+ +++ +  +L + +EK + + K K +    + E +   ++  EK ++ L   KR   
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE-EKSRQELEKIKRKLE 1066

Query: 164  AEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQ 223
             E +   E+   ++ + A ++A   K+EE  +   A          + L   +EL+    
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126

Query: 224  ELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVL 283
            +L    +++  A + A+          ++   LS EL  LK  L+   +T + +  EL  
Sbjct: 1127 DLQEDLESEKAARNKAE----------KQKRDLSEELEALKTELEDTLDTTATQQ-ELRG 1175

Query: 284  KLEEEID 290
               ++ D
Sbjct: 1176 SDYKDDD 1182

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 32/193 (16%), Positives = 74/193 (38%), Gaps = 30/193 (15%)

Query: 116  QEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRA 175
             + LK     +E  +K  +   +++ + QR  +E N++ +  L+ +    E +   +   
Sbjct: 906  LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS-LLEKMNNLEITYSTETEK 964

Query: 176  VEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQA 235
            +  +   +  S+++ +     + ++               +E+ ++++EL  T   K   
Sbjct: 965  LRSDVERLRMSEEEAKNATNRVLSL--------------QEEIAKLRKELHQTQTEKK-- 1008

Query: 236  LSHADDATKIAELHVEKVEILSSELTRLKALLDSQRE--------TESIKNRELVLKLEE 287
                    + A+ +  + E L SEL     LL +++E                +  KL E
Sbjct: 1009 -----TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE 1063

Query: 288  EIDTLKEELEKSR 300
            E   L+ +L   R
Sbjct: 1064 ETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 26/201 (12%), Positives = 75/201 (37%), Gaps = 6/201 (2%)

Query: 107  ELQAQLNLVQEDLKKAKEKIE---LIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKR 163
             ++     +Q  L+    + +   ++ + K   I +           +  L+  +  Q  
Sbjct: 837  CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896

Query: 164  AEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQ 223
                    + + +++E   +E  +K     + +I  ++ +         S  +++  ++ 
Sbjct: 897  YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956

Query: 224  ELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALL-DSQRETESI--KNRE 280
              +  T+     +     + + A+    +V  L  E+ +L+  L  +Q E ++I     +
Sbjct: 957  TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016

Query: 281  LVLKLEEEIDTLKEELEKSRT 301
               + E+ +  LKE+    +T
Sbjct: 1017 YKHETEQLVSELKEQNTLLKT 1037

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 114  LVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKF 173
            +V++  +  ++    ++      +   K    + E  +  +Q+ +  +            
Sbjct: 830  VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHV--RGWLARVHYHRTL 887

Query: 174  RAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLL-STTQELQRIKQELAMTTDAK 232
            +A+   Q        K E  + +IEA   +    +   L +   +LQR   E     + +
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ----NKE 943

Query: 233  NQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTL 292
             ++L        +   +  + E L S++ RL+   +  +          VL L+EEI  L
Sbjct: 944  YKSLLEK--MNNLEITYSTETEKLRSDVERLRMSEEEAKNAT-----NRVLSLQEEIAKL 996

Query: 293  KEELEKSR 300
            ++EL +++
Sbjct: 997  RKELHQTQ 1004

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 27/143 (18%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 96   EKSQSRLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQ 155
            ++ +S L K + L+   +   E L+   E++ + E+E   A + +   Q    +  ++L 
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 156  EALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTT 215
            +    +K  EE    +K++  E EQ  +   +++    + E E +  +   D A  ++ T
Sbjct: 1002 QTQTEKKTIEE--WADKYKH-ETEQL-VSELKEQNTLLKTEKEELNRR-IHDQAKEITET 1056

Query: 216  QELQRIKQELAMTTDAKNQALSH 238
             E + +++   +  D  ++ L +
Sbjct: 1057 MEKKLVEETKQLELDLNDERLRY 1079

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 37/284 (13%), Positives = 88/284 (30%), Gaps = 95/284 (33%)

Query: 94  PPEKSQSRLVKGSELQAQLNLVQEDLKKA--------KEKI-------ELIEKEKVQAID 138
               S +  +  + L  Q  +VQ+ +++            I        ++ +  ++  D
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 139 EL-KEAQRVA------EEANEKLQEALMAQKRAEENSEIEKFRAVE-MEQAG-----IEA 185
            L  + Q  A       +   KL++AL+  +         K   ++ +  +G     ++ 
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRP-------AKNVLIDGVLGSGKTWVALDV 170

Query: 186 SQKKEEE--------WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALS 237
               + +        W            L++ +  S    L+ + Q+L    D    + S
Sbjct: 171 CLSYKVQCKMDFKIFW------------LNLKNCNSPETVLEML-QKLLYQIDPNWTSRS 217

Query: 238 HADDATKIAELHVEKVEILSSELTRL-------KAL--LDSQRETESIKN-----RELV- 282
                 K+      ++  + +EL RL         L  L + +  ++        + L+ 
Sbjct: 218 DHSSNIKL------RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 283 -----------------LKLEEEIDTLKEELEKSRTFGKKINGK 309
                            + L+    TL  + E      K ++ +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCR 314

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 34/231 (14%), Positives = 83/231 (35%), Gaps = 48/231 (20%)

Query: 100 SRLVKGSELQAQLNLVQEDLKKAKE--------KIELI---EKEKVQAIDELKEAQRVAE 148
            RL+K    +  L LV  +++ AK         KI L+    K+    +          +
Sbjct: 235 RRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLD 292

Query: 149 EANEKLQE----ALMAQ----KRAEENSEIEKF--RAVEMEQAGIEASQKKE----EEWQ 194
             +  L      +L+ +    +  +   E+     R + +    I  S +      + W+
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI----IAESIRDGLATWDNWK 348

Query: 195 K-EIEAVRNQHALDVASLLSTTQELQRIKQELAM-TTDAK--NQALSHADDATKI--AEL 248
               + +       +  L     E +++   L++    A      LS       +   ++
Sbjct: 349 HVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLS-------LIWFDV 399

Query: 249 HVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKEELEKS 299
               V ++ ++L +  +L++ Q +  +I    + L+L+ +++     L +S
Sbjct: 400 IKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEY-ALHRS 448

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 23/203 (11%), Positives = 56/203 (27%), Gaps = 26/203 (12%)

Query: 101  RLVKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQE-ALM 159
             +    + + +L   +  +  A      I+          +E         ++ ++ A++
Sbjct: 828  AIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVL 887

Query: 160  AQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQ 219
             QK      ++E +   +    G   +       Q +++ +                E Q
Sbjct: 888  LQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAF-----------DGECQ 936

Query: 220  RIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNR 279
             ++ +      +    L+             E  E   +   +    + S  ET      
Sbjct: 937  SLEGQSNSDLLSILAQLTE-----LNYNGVPELTERKDTFFAQQWTGVKSSAETY----- 986

Query: 280  ELVLKLEEE----IDTLKEELEK 298
            +  L  E E    I+ L      
Sbjct: 987  KNTLLAELERLQKIEDLHHHHHH 1009

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 13/187 (6%)

Query: 115 VQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFR 174
           ++      + K+ LI++E    +          +     L++A      A       + +
Sbjct: 826 LEAIYNSLQTKLRLIKREPF--VAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK 883

Query: 175 AVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQ 234
              + Q      +K E     +   + +    D  + +       ++K   A   + ++ 
Sbjct: 884 IAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQ-----AKLKNLEAFDGECQSL 938

Query: 235 ALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEIDTLKE 294
                 D   I     E       ELT  K    +Q+         +    E   +TL  
Sbjct: 939 EGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQW------TGVKSSAETYKNTLLA 992

Query: 295 ELEKSRT 301
           ELE+ + 
Sbjct: 993 ELERLQK 999

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 96  EKSQSRLVKGSELQAQLNLVQED---LKKAKEKIELIEKEKVQAIDELKEAQRVAEEANE 152
           ++         E   +LN VQ++     KAKE  + +  EK +  +E KE      EA++
Sbjct: 40  KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99

Query: 153 KLQEALMA 160
            L+  +  
Sbjct: 100 NLRSKINQ 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.03
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.54
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.52
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.14
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	94.39
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	91.56
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.49
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	91.22
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	90.06
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	87.39
2b5u_A	551	Colicin E3; high resolution colicin E3, ribosome i	87.23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	87.14
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	86.12
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	86.08
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	85.56
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	83.53
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	83.49
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	82.26
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	80.15

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.03  E-value=0.028  Score=61.03  Aligned_cols=18  Identities=28%  Similarity=0.442  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 039546          113 NLVQEDLKKAKEKIELIE  130 (313)
Q Consensus       113 ~~~QeEL~k~KeQl~~AE  130 (313)
                      ..++++|.+++..+...+
T Consensus       860 ~~L~~eL~el~~~L~~le  877 (1184)
T 1i84_S          860 QAKDEELQRTKERQQKAE  877 (1184)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.54  E-value=0.05  Score=59.15  Aligned_cols=47  Identities=19%  Similarity=0.196  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          111 QLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA  157 (313)
Q Consensus       111 QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a  157 (313)
                      +|..++..+.++..++...+..+..+..+|......+.++...+...
T Consensus       872 ~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l  918 (1184)
T 1i84_S          872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL  918 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.14  E-value=2.9  Score=50.54  Aligned_cols=162  Identities=14%  Similarity=0.170  Sum_probs=76.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 039546          103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAG  182 (313)
Q Consensus       103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~  182 (313)
                      .|..+-..|++.+|++|...+-+|+.+...=.+++.++...+..+++-+...+.   .+..+.+..+-...+-.+.|..-
T Consensus      1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~---~~~~~~~~~~ei~~~k~~~e~dL 2003 (3245)
T 3vkg_A         1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARE---LQVQLDVRNKEIAVQKVKAYADL 2003 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777888888888888888777666666666666555554443322211   12221111111111212222210


Q ss_pred             hhhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039546          183 IEASQ------KKEEEWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEIL  256 (313)
Q Consensus       183 ~~~a~------~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeL  256 (313)
                      . .+.      ..=..++.+|+.++.+....-+.|..+.+.|..++.+|+.++.+|..--..++....-......=+..|
T Consensus      2004 ~-~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A         2004 E-KAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            0 000      001223444455555555555555555556666666666666655554444443332221111114445


Q ss_pred             HHHHHHHHHHhh
Q 039546          257 SSELTRLKALLD  268 (313)
Q Consensus       257 t~EL~~lKe~Le  268 (313)
                      ..|=.|=.+.++
T Consensus      2083 ~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A         2083 NSERGRWEQQSE 2094 (3245)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhccccHHHHHH
Confidence            555444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.05  E-value=1.9  Score=38.93  Aligned_cols=51  Identities=6%  Similarity=0.115  Sum_probs=27.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL  154 (313)
Q Consensus       104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL  154 (313)
                      ..+++.++|+.+...+......+...+.....+-..+...+..++++...+
T Consensus        12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~   62 (256)
T 3na7_A           12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQV   62 (256)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666655555555555555444444444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=94.39  E-value=2.8  Score=37.83  Aligned_cols=68  Identities=7%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039546          112 LNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEME  179 (313)
Q Consensus       112 L~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElE  179 (313)
                      |..+-.+|..+..++...-..-..+..++...+..+..+...++...........+.+-...+....+
T Consensus        13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~   80 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ   80 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555577777777777766666666677777777777777777776666666666555555555543

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.56  E-value=5  Score=32.98  Aligned_cols=50  Identities=20%  Similarity=0.290  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546          198 EAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLD  268 (313)
Q Consensus       198 E~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Le  268 (313)
                      ..++..-..--++|.-++.++...-.+|..+++-|..                     |..||++-+-+|+
T Consensus        80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~---------------------Ld~EIatYRkLLE  129 (131)
T 3tnu_A           80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR---------------------LEQEIATYRRLLE  129 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhHC
Confidence            3333333334456677788888888889888887766                     7888888888776

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.49  E-value=9.6  Score=41.49  Aligned_cols=21  Identities=24%  Similarity=0.134  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhH
Q 039546          251 EKVEILSSELTRLKALLDSQR  271 (313)
Q Consensus       251 eKveeLt~EL~~lKe~Les~~  271 (313)
                      ++|..|..|...|+..++.-.
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777788888888777666544

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=91.22  E-value=6.8  Score=33.83  Aligned_cols=66  Identities=14%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          141 KEAQRVAEEANEKLQEALMAQKRAEENSEIEKFRAVEMEQAGIEASQKKEEEWQKEIEAVRNQHALDVASLLSTTQELQR  220 (313)
Q Consensus       141 E~AKr~ieeL~~KLE~a~~~q~qA~e~sEl~k~Ra~ElEq~~~~~a~~~~~a~k~ELE~ar~qha~~~AeL~Sak~EL~k  220 (313)
                      +.-..+|..|+.+|..|       ..-.+.+.-.+..||+..        .-+.-+|...+..|.....+|+.+-.+|.-
T Consensus        73 d~yEeqIk~L~~kLKEA-------E~RAE~AERsv~kLEk~i--------d~lEd~L~~~Kek~~~i~~eLd~tl~el~~  137 (155)
T 2efr_A           73 DKYEEEIKVLSDKLKEA-------ETRAEFAERSVTKLEKSI--------DDLEDELYAQKLKYKAISEEMKQLEDKVEE  137 (155)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556667777777766       233456666677777641        225567888888888888888888888877


Q ss_pred             H
Q 039546          221 I  221 (313)
Q Consensus       221 l  221 (313)
                      +
T Consensus       138 ~  138 (155)
T 2efr_A          138 L  138 (155)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=90.06  E-value=6.9  Score=32.01  Aligned_cols=50  Identities=24%  Similarity=0.319  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546          198 EAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLD  268 (313)
Q Consensus       198 E~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Le  268 (313)
                      ..++..-..--++|.-++.++...-.+|..+++-|..                     |..||++-+-+|+
T Consensus        78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~---------------------Ld~EIatYRkLLE  127 (129)
T 3tnu_B           78 KDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA---------------------LDVEIATYRKLLE  127 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhHC
Confidence            3333333333456667788888888889888887766                     7788888877775

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=87.39  E-value=9  Score=32.00  Aligned_cols=60  Identities=23%  Similarity=0.290  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIE-----------LIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQKRAE  165 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~-----------~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q~qA~  165 (313)
                      ..||.||.++|+-|....-|..           +.+..|+|.+..+++-+..|.+|+.+|.++.++-.+.+
T Consensus        28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr   98 (121)
T 3mq7_A           28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR   98 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888877775543           34555666666666666777777777777654443333

>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*

Probab=87.23  E-value=28  Score=35.46  Aligned_cols=102  Identities=19%  Similarity=0.195  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhh
Q 039546          203 QHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHAD----DATKIAELHVEKVEILSSELTRLKALLDSQRETESIKN  278 (313)
Q Consensus       203 qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~Ae----eA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~  278 (313)
                      +++..+.-+.+.+.+|+.+.+.+..++.+.+.=...+-    --+++...+..++.--..+|..++.++|-.........
T Consensus       343 r~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~~~~s~~~  422 (551)
T 2b5u_A          343 RQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDAD  422 (551)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHHhhcccchh
Confidence            44456666666777777777777777776665443222    11344444555555555566666666666654443444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhHhhhh
Q 039546          279 RELVLKLEEEIDTLKEELEKSRTFGKKING  308 (313)
Q Consensus       279 ~e~~~~le~e~~~L~~el~ka~~~e~k~~~  308 (313)
                      +++-.-+|    .-++.-.|.++.|.||.+
T Consensus       423 ~~ls~~me----~Rkq~e~k~k~ae~kl~~  448 (551)
T 2b5u_A          423 AALSSAME----SRKKKEDKKRSAENNLND  448 (551)
T ss_dssp             HHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhh----cccchhhhhhhhhhccch
Confidence            44433344    226666677888888865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.14  E-value=18  Score=35.14  Aligned_cols=37  Identities=14%  Similarity=0.173  Sum_probs=25.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          106 SELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKE  142 (313)
Q Consensus       106 ~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~  142 (313)
                      ..++.++..+..++..+++.+...+........+++.
T Consensus       452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~  488 (597)
T 3oja_B          452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT  488 (597)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4456677777778888887777777766666666554

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=86.12  E-value=7.1  Score=30.30  Aligned_cols=44  Identities=16%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          118 DLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQ  161 (313)
Q Consensus       118 EL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q  161 (313)
                      ||..++.|+..+-..|+++..|++.++-.+++++.|.+.-..-+
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R   44 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR   44 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999854333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=86.08  E-value=18  Score=32.16  Aligned_cols=50  Identities=14%  Similarity=0.175  Sum_probs=33.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          105 GSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEA  157 (313)
Q Consensus       105 ~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a  157 (313)
                      .-++..++..++.+|..|.+....-|..   .-.||+.+.+.+-+|..++...
T Consensus        19 ~~~~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L   68 (189)
T 2v71_A           19 SMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRL   68 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            3556678888888888888877766654   4455666666666666555443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=85.56  E-value=4.7  Score=31.34  Aligned_cols=66  Identities=24%  Similarity=0.279  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHHH
Q 039546          216 QELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLDSQRETESIKNRELVLKLEEEI  289 (313)
Q Consensus       216 ~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Les~~~~e~~~~~e~~~~le~e~  289 (313)
                      .|++.|=.|+..+++-|++ ++-+.      ..-..||++||.|-..|++.|++...+...-. ..|..||+|+
T Consensus         9 kevEnLi~EN~eLl~TKNa-Lnvvk------~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~-~ri~elEeEl   74 (77)
T 2w83_C            9 REVENLILENTQLLETKNA-LNIVK------NDLIAKVDELTCEKDVLQGELEAVKQAKLKLE-EKNRELEEEL   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            3555555555555555554 22111      12246899999999999999999986555443 4556666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.53  E-value=34  Score=33.23  Aligned_cols=77  Identities=9%  Similarity=0.096  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039546          192 EWQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDAKNQALSHADDATKIAELHVEKVEILSSELTRLKALLD  268 (313)
Q Consensus       192 a~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~ak~aA~~~AeeA~~aae~~~eKveeLt~EL~~lKe~Le  268 (313)
                      -...++..++++++.-..++...+++++..+.+|+.+=.+...--++-++....-....+.+..++.+|..+.+-++
T Consensus       506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34555555566666666666666666666666665444444433334444444444455556667777776666554

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.49  E-value=16  Score=29.41  Aligned_cols=39  Identities=10%  Similarity=0.224  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 039546          193 WQKEIEAVRNQHALDVASLLSTTQELQRIKQELAMTTDA  231 (313)
Q Consensus       193 ~k~ELE~ar~qha~~~AeL~Sak~EL~klrqEl~~~~~a  231 (313)
                      +..+|+.+|.+|...-..+..+..|+.+|..+|..--..
T Consensus         3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~   41 (97)
T 2eqb_B            3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENEL   41 (97)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            456788888888888888888999999998888654333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.26  E-value=18  Score=29.12  Aligned_cols=75  Identities=16%  Similarity=0.182  Sum_probs=44.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHH
Q 039546          104 KGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKL-QEALMAQKRAEENSEIEKFRAVEM  178 (313)
Q Consensus       104 ~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KL-E~a~~~q~qA~e~sEl~k~Ra~El  178 (313)
                      .+..++.++..+..++.+++..|..-...+..|-.+......-+++|+.-| +.|+.=-..|....+..+.+...|
T Consensus        13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L   88 (97)
T 2eqb_B           13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRL   88 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666666777777777666666666666666666667777777666 344433333333344444444444

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=80.15  E-value=17  Score=27.48  Aligned_cols=59  Identities=17%  Similarity=0.116  Sum_probs=45.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039546          103 VKGSELQAQLNLVQEDLKKAKEKIELIEKEKVQAIDELKEAQRVAEEANEKLQEALMAQ  161 (313)
Q Consensus       103 ~~~~elE~QL~~~QeEL~k~KeQl~~AE~~KaqAl~ELE~AKr~ieeL~~KLE~a~~~q  161 (313)
                      .|...+..+++.+++.+..+..++..++....++-.|+..-++-+.-|...|+.+...-
T Consensus         6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l   64 (81)
T 1ic2_A            6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL   64 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788888888888888888888888888888888877777777777777764433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00