Citrus Sinensis ID: 039554
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 189 | ||||||
| 359489248 | 619 | PREDICTED: protein WAX2-like [Vitis vini | 1.0 | 0.305 | 0.772 | 8e-77 | |
| 297734709 | 2763 | unnamed protein product [Vitis vinifera] | 1.0 | 0.068 | 0.767 | 2e-76 | |
| 297734710 | 631 | unnamed protein product [Vitis vinifera] | 1.0 | 0.299 | 0.777 | 4e-76 | |
| 359489250 | 619 | PREDICTED: protein WAX2-like [Vitis vini | 1.0 | 0.305 | 0.767 | 4e-76 | |
| 359489252 | 619 | PREDICTED: protein WAX2-like [Vitis vini | 1.0 | 0.305 | 0.777 | 5e-76 | |
| 297734708 | 256 | unnamed protein product [Vitis vinifera] | 1.0 | 0.738 | 0.772 | 6e-76 | |
| 359489254 | 619 | PREDICTED: protein WAX2-like [Vitis vini | 1.0 | 0.305 | 0.772 | 9e-76 | |
| 168013327 | 619 | TCER1 [Triticum aestivum] | 1.0 | 0.305 | 0.666 | 1e-75 | |
| 326493886 | 436 | predicted protein [Hordeum vulgare subsp | 1.0 | 0.433 | 0.671 | 2e-75 | |
| 222623261 | 619 | hypothetical protein OsJ_07566 [Oryza sa | 1.0 | 0.305 | 0.656 | 3e-75 |
| >gi|359489248|ref|XP_002265685.2| PREDICTED: protein WAX2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 291 bits (745), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 146/189 (77%), Positives = 165/189 (87%)
Query: 1 MLHNQKWINLSRYRTAKGSNRIVDKAIEFEQVERERNWDDQIIFNGILFYVFSKILPGTT 60
MLHNQ WI+LSR+RTAKG+NRIVDK IEFEQV+RERNWDDQIIFNGI+FY+ ILPG +
Sbjct: 58 MLHNQLWISLSRHRTAKGNNRIVDKGIEFEQVDRERNWDDQIIFNGIIFYIAYFILPGAS 117
Query: 61 QLSFWRLDGVILTALLHAGPVDFLYYWLHRALHHHYLYSRNHSHHHSSIVTEPITSVIHP 120
+ WR+DGV++T LLH GPV+FLYYWLHRALHHHYLYSR HSHHHSSIVTEPITSVIHP
Sbjct: 118 HMPLWRVDGVVITILLHTGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHP 177
Query: 121 FAEHIAYFALLSIPLVTTVLIGTASIVSIFGYIIFIDLMNNMGHCNFELVPNWLFTIFPP 180
FAEHI YF L SIPL+T + GT+ IV+ FGYI +ID MNNMGHCNFELVP WLF+IFP
Sbjct: 178 FAEHIGYFLLFSIPLLTMIFTGTSCIVAFFGYISYIDFMNNMGHCNFELVPKWLFSIFPF 237
Query: 181 LKYLMYSPS 189
LKYLMY+PS
Sbjct: 238 LKYLMYTPS 246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734709|emb|CBI16760.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297734710|emb|CBI16761.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359489250|ref|XP_003633900.1| PREDICTED: protein WAX2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359489252|ref|XP_002263787.2| PREDICTED: protein WAX2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297734708|emb|CBI16759.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359489254|ref|XP_002265189.2| PREDICTED: protein WAX2-like [Vitis vinifera] gi|297734711|emb|CBI16762.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|168013327|gb|ACA14353.1| TCER1 [Triticum aestivum] | Back alignment and taxonomy information |
|---|
| >gi|326493886|dbj|BAJ85405.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
| >gi|222623261|gb|EEE57393.1| hypothetical protein OsJ_07566 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 189 | ||||||
| TAIR|locus:2204813 | 627 | AT1G02190 "AT1G02190" [Arabido | 1.0 | 0.301 | 0.708 | 2.2e-73 | |
| TAIR|locus:2040666 | 613 | AT2G37700 "AT2G37700" [Arabido | 1.0 | 0.308 | 0.661 | 2e-72 | |
| UNIPROTKB|Q7XDI3 | 621 | Os10g0471100 "CER1 protein, pu | 1.0 | 0.304 | 0.682 | 4.8e-71 | |
| UNIPROTKB|Q109K1 | 595 | LOC_Os10g33250 "CER1 protein, | 0.492 | 0.156 | 0.591 | 1.3e-54 | |
| TAIR|locus:2174368 | 632 | CER3 "ECERIFERUM 3" [Arabidops | 0.894 | 0.267 | 0.356 | 5.1e-27 | |
| UNIPROTKB|Q6ETL8 | 628 | P0544B02.10 "Os02g0178800 prot | 0.968 | 0.291 | 0.293 | 1.7e-21 | |
| UNIPROTKB|F1S9R7 | 299 | SC5DL "Uncharacterized protein | 0.507 | 0.321 | 0.330 | 5.4e-07 | |
| UNIPROTKB|B4DIE1 | 310 | C5orf4 "Uncharacterized protei | 0.878 | 0.535 | 0.280 | 8.9e-07 | |
| UNIPROTKB|Q96IV6 | 333 | C5orf4 "Uncharacterized protei | 0.878 | 0.498 | 0.280 | 1e-06 | |
| TIGR_CMR|SPO_3848 | 260 | SPO_3848 "sterol desaturase fa | 0.640 | 0.465 | 0.291 | 1.6e-06 |
| TAIR|locus:2204813 AT1G02190 "AT1G02190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 134/189 (70%), Positives = 156/189 (82%)
Query: 1 MLHNQKWINLSRYRTAKGSNRIVDKAIEFEQVERERNWDDQIIFNGILFYVFSKILPGTT 60
++H+Q WI++SR RTAKG+N+IVDK IEFEQV+RER WDDQ+IFN +L Y+ + LPG +
Sbjct: 58 IVHSQIWISVSRQRTAKGTNKIVDKPIEFEQVDRERTWDDQVIFNTLLMYLANIKLPGAS 117
Query: 61 QLSFWRLDGVILTALLHAGPVDFLYYWLHRALHHHYLYSRNHSHHHSSIVTEPITSVIHP 120
L WRLDG IL ALLHAGPV+FLYYW HRALHHH+LYSR HSHHHSSIVTEPITSV+HP
Sbjct: 118 HLPPWRLDGAILMALLHAGPVEFLYYWFHRALHHHFLYSRYHSHHHSSIVTEPITSVVHP 177
Query: 121 FAEHIAYFALLSIPLVTTVLIGTASIVSIFGYIIFIDLMNNMGHCNFELVPNWLFTIFPP 180
FAEHIAY L +IP+VT L G SIVSI GYI +ID MNNMGHCNFEL P LF +FPP
Sbjct: 178 FAEHIAYTLLFAIPMVTASLCGILSIVSIMGYITYIDFMNNMGHCNFELFPKRLFHLFPP 237
Query: 181 LKYLMYSPS 189
LK+L Y+PS
Sbjct: 238 LKFLCYTPS 246
|
|
| TAIR|locus:2040666 AT2G37700 "AT2G37700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q7XDI3 Os10g0471100 "CER1 protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q109K1 LOC_Os10g33250 "CER1 protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2174368 CER3 "ECERIFERUM 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6ETL8 P0544B02.10 "Os02g0178800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S9R7 SC5DL "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B4DIE1 C5orf4 "Uncharacterized protein C5orf4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q96IV6 C5orf4 "Uncharacterized protein C5orf4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SPO_3848 SPO_3848 "sterol desaturase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00010560001 | SubName- Full=Chromosome undetermined scaffold_268, whole genome shotgun sequence; (256 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 189 | |||
| PLN02869 | 620 | PLN02869, PLN02869, fatty aldehyde decarbonylase | 1e-123 | |
| pfam04116 | 114 | pfam04116, FA_hydroxylase, Fatty acid hydroxylase | 3e-09 | |
| COG3000 | 271 | COG3000, ERG3, Sterol desaturase [Lipid metabolism | 4e-08 |
| >gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase | Back alignment and domain information |
|---|
Score = 360 bits (926), Expect = e-123
Identities = 150/189 (79%), Positives = 167/189 (88%)
Query: 1 MLHNQKWINLSRYRTAKGSNRIVDKAIEFEQVERERNWDDQIIFNGILFYVFSKILPGTT 60
MLHNQ WI+LSRYRTAKG+NRIVDK IEFEQV+RERNWDDQI+FNGILFYV ILPG +
Sbjct: 58 MLHNQLWISLSRYRTAKGNNRIVDKGIEFEQVDRERNWDDQILFNGILFYVGYMILPGAS 117
Query: 61 QLSFWRLDGVILTALLHAGPVDFLYYWLHRALHHHYLYSRNHSHHHSSIVTEPITSVIHP 120
+ WR DGV++T LLH GPV+FLYYWLHRALHHHYLYSR HSHHHSSIVTEPITSVIHP
Sbjct: 118 HMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHP 177
Query: 121 FAEHIAYFALLSIPLVTTVLIGTASIVSIFGYIIFIDLMNNMGHCNFELVPNWLFTIFPP 180
FAEHIAYF L +IPL+TT+ GTASI + FGYI +ID MNNMGHCNFEL+P WLF+IFPP
Sbjct: 178 FAEHIAYFLLFAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPP 237
Query: 181 LKYLMYSPS 189
LKYLMY+PS
Sbjct: 238 LKYLMYTPS 246
|
Length = 620 |
| >gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 189 | |||
| PLN02869 | 620 | fatty aldehyde decarbonylase | 100.0 | |
| KOG0873 | 283 | consensus C-4 sterol methyl oxidase [Lipid transpo | 99.93 | |
| COG3000 | 271 | ERG3 Sterol desaturase [Lipid metabolism] | 99.82 | |
| PF04116 | 114 | FA_hydroxylase: Fatty acid hydroxylase superfamily | 99.69 | |
| KOG0872 | 312 | consensus Sterol C5 desaturase [Lipid transport an | 99.6 | |
| KOG0874 | 287 | consensus Sphingolipid hydroxylase [Lipid transpor | 99.41 | |
| PLN02601 | 303 | beta-carotene hydroxylase | 95.8 | |
| PLN02434 | 237 | fatty acid hydroxylase | 85.02 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 81.16 |
| >PLN02869 fatty aldehyde decarbonylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=306.08 Aligned_cols=189 Identities=79% Similarity=1.411 Sum_probs=177.3
Q ss_pred CccceeehhccCcchhhhcCccCCCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHhhhh
Q 039554 1 MLHNQKWINLSRYRTAKGSNRIVDKAIEFEQVERERNWDDQIIFNGILFYVFSKILPGTTQLSFWRLDGVILTALLHAGP 80 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~kiq~~~~~~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~ll~~~~ 80 (189)
++++|+|++++|+.++.+|+||++|..+.+|++||++||+++++++++++++...+|..+.+|.|...+++..+++|+++
T Consensus 58 ~l~~q~W~s~sr~~~~~~~~ri~~~~i~f~QvDre~~wDd~iil~~l~~~~~~~~~p~~~~~P~W~~~g~l~~~Llhv~~ 137 (620)
T PLN02869 58 MLHNQLWISLSRYRTAKGNNRIVDKGIEFEQVDRERNWDDQILFNGILFYVGYMILPGASHMPLWRTDGVLITILLHMGP 137 (620)
T ss_pred HHHHHHHHHHHhhhhhhhceeeeccCCCceeeccccccchHHHHHHHHHHHHHHhhhhhhcCcccccchHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999998888889999999988788889999999
Q ss_pred hhHHHHhHHhhcChhhhhhhhhhccCCCCCCCcchhcccCHHhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Q 039554 81 VDFLYYWLHRALHHHYLYSRNHSHHHSSIVTEPITSVIHPFAEHIAYFALLSIPLVTTVLIGTASIVSIFGYIIFIDLMN 160 (189)
Q Consensus 81 ~D~~~Yw~HR~~H~~~~~w~~H~vHH~~~~p~~~t~~~hp~~E~~~~~~~~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
.|+++||.||++|++++||++|++||++++|+++|+++||++|.+.+..++.+|+++.++.+..|..++.+++++..+.+
T Consensus 138 ~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g~~hi~t~~~yli~~~f~~ 217 (620)
T PLN02869 138 VEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTGTASIAAFFGYISYIDFMN 217 (620)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888887677888998877777778999999999999999
Q ss_pred hhccccceeecccccccCCCceEEeeCCC
Q 039554 161 NMGHCNFELVPNWLFTIFPPLKYLMYSPS 189 (189)
Q Consensus 161 ~~~Hsg~~~~p~~~~~~~~~l~~v~~TP~ 189 (189)
+++|||+|++|+++.+.+|+++|+++||+
T Consensus 218 ~~gHSN~El~P~~~~~~~ppLkyll~TPs 246 (620)
T PLN02869 218 NMGHCNFELIPKWLFSIFPPLKYLMYTPS 246 (620)
T ss_pred cccccCccccccchhccCCcchheecCch
Confidence 99999999999998887899999999995
|
|
| >KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >COG3000 ERG3 Sterol desaturase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases | Back alignment and domain information |
|---|
| >KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02601 beta-carotene hydroxylase | Back alignment and domain information |
|---|
| >PLN02434 fatty acid hydroxylase | Back alignment and domain information |
|---|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00