Citrus Sinensis ID: 039564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
Protein Sequence
RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQKKRRKNRRRRN
Secondary Structure (PSIPRED)
cccccccccHHHHccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHHccccccEEEEcccccEEEccccccccccccccEEEcccccccccccHHHHHccccccccccccccEEEcccccccccccccccccEEEEEEEEEEccEEEEcEEccccEEEEccccccccccHHHHHccccccccccccccccccccHHHHccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHcccccccEEEcccccccccccHHHHHcccccccEEEcccccccccccccHHHccccccEEEEcccccccccccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccHccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHccccccEEEEEccccccccccccHccccccccEEEEEccccccccccHHHHHccccccEEEccccccccccccccccccHcccHHHHHcccccccccccccHHcccccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
rscnlfefpnflKQQKHLkaldlssnklhgnipkwllnpsmqnfsylnlsknsltgfdqhpsvfpwssgeftldlssnflqgpipapptktrhylvsknnltgeipswicnlsslyildlsdnnlsgelprclgnfsdtfmngsnlgIIDMShnllqgripkslaNCAVLEIIDlgnnqiidtfpawlgtlseLDILVLQSNNfhgeikehkmecgfpklrivdlsnnsftgnlpskyfQCWNAMKFVNASQLRYMRNFLSSyfsfdfygyfphyyysltmsnkgqmlsyekiPYILTAVILssngfhgeiptsianlkgLQVLSLANNnleghipscfgdltklesldlsnnwfsgqipqqltgltFLEFFNVshnnltgpipeanqfptfdsssfdgnsglcgkplfkecenseapanedqiADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQKKRrknrrrrn
Flexible Loop (DISEMBL)
RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFleklgmqqkkrrknrrrrn
Low Complexity Region (SEG)
RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNflssyfsfdfygyfPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEivligyaggvvaglvlgFNFSTGIVGWFLEKLGMQQkkrrknrrrrn
Disordered region (IsUnstruct)
****LFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI********************************************KALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKL***************
Disordered Region (DISOPRED)
RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV*****RYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP**************************AFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQK**********
Disordered Region (DISEMBL)
RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKEC*********DQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKLGM*************
Disordered Region (DISPRO)
*SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKEC*******************SGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQKKRR*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQKKRRKNRRRRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	485	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.938	0.537	0.364	2e-76
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.882	0.374	0.315	1e-42
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.826	0.335	0.308	2e-42
O22938	890	Leucine-rich repeat recep	no	no	0.812	0.442	0.307	3e-40
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.903	0.375	0.288	3e-39
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.913	0.371	0.280	3e-39
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.795	0.529	0.305	3e-39
Q9LJF3	1164	Receptor-like protein kin	no	no	0.863	0.359	0.305	4e-39
Q42371	976	LRR receptor-like serine/	no	no	0.816	0.405	0.301	6e-39
Q9FL28	1173	LRR receptor-like serine/	no	no	0.779	0.322	0.321	9e-39

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  287 bits (734), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/513 (36%), Positives = 258/513 (50%), Gaps = 58/513 (11%)

Query: 6   FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFP 65
            EF N     K L+ L L  N+LHG IP+ +    + N   L++S N+ TG    P    
Sbjct: 342 IEFANTSSSTK-LQDLILGRNRLHGPIPESI--SRLLNLEELDISHNNFTG--AIPPTIS 396

Query: 66  WSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLT----------------------- 102
                  LDLS N L+G +PA   +    ++S N+ +                       
Sbjct: 397 KLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQ 456

Query: 103 GEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS------------------DTFMNGS 144
           G IP  IC LSSL  LDLS+N  SG +P C+ NFS                  D F   +
Sbjct: 457 GPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKAT 516

Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
            L  +D+SHN L+G+ PKSL NC  LE++++ +N+I D FP+WL +L  L +L L+SN F
Sbjct: 517 ELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKF 576

Query: 205 HGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYF 264
           +G +       GF  LRI+D+S+N+F+G LP  YF  W  M  +     +YM        
Sbjct: 577 YGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMT------- 629

Query: 265 SFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVL 324
             +F+ Y   YY+ + M NKG  +S+E+I     A+  S N  +G IP S+  LK L+VL
Sbjct: 630 --EFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVL 687

Query: 325 SLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP 384
           +L+ N     IP    +LTKLE+LD+S N  SGQIPQ L  L+FL + N SHN L GP+P
Sbjct: 688 NLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVP 747

Query: 385 EANQFPTFDSSSFDGNSGLCGKPLFKECENSEAPANEDQI-ADSKALLSGAFDWEIVLIG 443
              QF     SSF  N GL G  L   C ++ A     Q+  D        F+W    I 
Sbjct: 748 RGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIA 805

Query: 444 YAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQKK 476
           Y  GV+ GLV+G  +++    WF EK G +Q K
Sbjct: 806 YGPGVLCGLVIGHFYTSHNHEWFTEKFGRKQHK 838

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  174 bits (442), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 212/469 (45%), Gaps = 41/469 (8%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
           +FP  +   K L+  D SSN+  G IP  L  P   +   L L  N +TG  + P     
Sbjct: 341 DFPTSISACKSLRIADFSSNRFSGVIPPDLC-PGAASLEELRLPDNLVTG--EIPPAISQ 397

Query: 67  SSGEFTLDLSSNFLQGPIPAPP---TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDN 123
            S   T+DLS N+L G IP       K   ++   NN+ GEIP  I  L +L  L L++N
Sbjct: 398 CSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNN 457

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDT 183
            L+GE+P         F N SN+  +  + N L G +PK     + L ++ LGNN     
Sbjct: 458 QLTGEIP-------PEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGE 510

Query: 184 FPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS--FTGNLPSKYFQC 241
            P  LG  + L  L L +N+  GEI          K     LS N+  F  N+ +    C
Sbjct: 511 IPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGN---SC 567

Query: 242 WNAMKFVNASQLRYMRNF-LSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAV 300
                 V  S +R  R   + S  S DF   +     SL          Y+ I Y+    
Sbjct: 568 KGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILSL-------FTRYQTIEYL---- 616

Query: 301 ILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP 360
            LS N   G+IP  I  +  LQVL L++N L G IP   G L  L   D S+N   GQIP
Sbjct: 617 DLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIP 676

Query: 361 QQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECE--NSEAP 418
           +  + L+FL   ++S+N LTGPIP+  Q  T  ++ +  N GLCG PL  EC+  N++ P
Sbjct: 677 ESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYANNPGLCGVPL-PECKNGNNQLP 735

Query: 419 ANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFL 467
           A  ++   +K     A         +A  +V G+++       ++ W +
Sbjct: 736 AGTEEGKRAKHGTRAA--------SWANSIVLGVLISAASVCILIVWAI 776

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 152/492 (30%), Positives = 211/492 (42%), Gaps = 91/492 (18%)

Query: 7   EFPNFLKQQ-KHLKALDLSSNKLHGNIPKWLLNP-----------------------SMQ 42
           E P+FL      L  LDLS N  +G +P +  +                         M+
Sbjct: 306 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 365

Query: 43  NFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI-----PAPPTKTRHYLVS 97
               L+LS N  +G +   S+   S+   TLDLSSN   GPI       P    +   + 
Sbjct: 366 GLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 424

Query: 98  KNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS-----------------DTF 140
            N  TG+IP  + N S L  L LS N LSG +P  LG+ S                    
Sbjct: 425 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 484

Query: 141 MNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQ 200
           M    L  + +  N L G IP  L+NC  L  I L NN++    P W+G L  L IL L 
Sbjct: 485 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 544

Query: 201 SNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWN--AMKFVNASQLRYMRN 258
           +N+F G I     +C    L  +DL+ N F G +P+  F+     A  F+   +  Y++N
Sbjct: 545 NNSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 602

Query: 259 -------------------------FLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKI 293
                                     LS+    +        + S T  N G M+  +  
Sbjct: 603 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD-- 660

Query: 294 PYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN 353
                   +S N   G IP  I ++  L +L+L +N++ G IP   GDL  L  LDLS+N
Sbjct: 661 --------MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 712

Query: 354 WFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECE 413
              G+IPQ ++ LT L   ++S+NNL+GPIPE  QF TF  + F  N GLCG PL   C+
Sbjct: 713 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCD 771

Query: 414 NSEAPANEDQIA 425
               P+N D  A
Sbjct: 772 ----PSNADGYA 779

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/442 (30%), Positives = 197/442 (44%), Gaps = 48/442 (10%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
           + LK LDLS N  +G IP    N  +    +L+LS N   G    P  F    G    ++
Sbjct: 86  RSLKHLDLSGNNFNGRIPTSFGN--LSELEFLDLSLNRFVG--AIPVEFGKLRGLRAFNI 141

Query: 76  SSNFLQGPIP---APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRC 132
           S+N L G IP       +   + VS N L G IP W+ NLSSL +    +N+L GE+P  
Sbjct: 142 SNNLLVGEIPDELKVLERLEEFQVSGNGLNGSIPHWVGNLSSLRVFTAYENDLVGEIPNG 201

Query: 133 LGNFSDT-----------------FMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL 175
           LG  S+                        L ++ ++ N L G +P+++  C+ L  I +
Sbjct: 202 LGLVSELELLNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLTGELPEAVGICSGLSSIRI 261

Query: 176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLP 235
           GNN+++   P  +G +S L       NN  GEI     +C    L +++L+ N F G +P
Sbjct: 262 GNNELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSKCS--NLTLLNLAANGFAGTIP 319

Query: 236 SKYFQCWNAMKFV------------------NASQLRYMRNFLSSYFSFDFYGYFPHYYY 277
           ++  Q  N  + +                  N ++L    N L+     +     P   Y
Sbjct: 320 TELGQLINLQELILSGNSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIPKELCS-MPRLQY 378

Query: 278 SLTMSN--KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV-LSLANNNLEGH 334
            L   N  +G +         L  + L  N   G IP  I  ++ LQ+ L+L+ N+L G 
Sbjct: 379 LLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRMRNLQIALNLSFNHLHGS 438

Query: 335 IPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDS 394
           +P   G L KL SLD+SNN  +G IP  L G+  L   N S+N L GP+P    F    +
Sbjct: 439 LPPELGKLDKLVSLDVSNNLLTGSIPPLLKGMMSLIEVNFSNNLLNGPVPVFVPFQKSPN 498

Query: 395 SSFDGNSGLCGKPLFKECENSE 416
           SSF GN  LCG PL   C  SE
Sbjct: 499 SSFLGNKELCGAPLSSSCGYSE 520

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 155/538 (28%), Positives = 235/538 (43%), Gaps = 100/538 (18%)

Query: 16  KHLKALDLSSNKLHGNIPK------WLLNPSMQN-----------------FSYLNLSKN 52
           K L  LDLS N   G +P       WL N ++ N                  +YL ++ N
Sbjct: 302 KTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYN 361

Query: 53  SLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPA------PPTKTRHYLVSKNNLTGEIP 106
           +++G    P      S    LDLSSN   G +P+              L++ N L+G +P
Sbjct: 362 NISG--SVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVP 419

Query: 107 SWICNLSSLYILDLSDNNLSGELPR---CLGNFSDTFM---------------NGSNLGI 148
             +    SL  +DLS N L+G +P+    L N SD  M                G NL  
Sbjct: 420 MELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLET 479

Query: 149 IDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEI 208
           + +++NLL G IP+S++ C  +  I L +N++    P+ +G LS+L IL L +N+  G +
Sbjct: 480 LILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNV 539

Query: 209 KEHKMECGFPKLRIVDLSNNSFTGNLPSKYF-QCWNAMK-FVNASQLRYMRNFLSSYFS- 265
                 C    L  +DL++N+ TG+LP +   Q    M   V+  Q  ++RN   +    
Sbjct: 540 PRQLGNC--KSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRG 597

Query: 266 ----FDFYGY---------------FPHYYYSLTM---SNKGQMLSYEKIPYILTAVILS 303
                +F G                    Y  +TM   S  G M+ ++          +S
Sbjct: 598 AGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFD----------IS 647

Query: 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQL 363
            N   G IP    N+  LQVL+L +N + G IP  FG L  +  LDLS+N   G +P  L
Sbjct: 648 YNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSL 707

Query: 364 TGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECENSEAPANEDQ 423
             L+FL   +VS+NNLTGPIP   Q  TF  S +  NSGLCG PL + C ++       +
Sbjct: 708 GSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPL-RPCGSAPRRPITSR 766

Query: 424 IADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQKKRRKNR 481
           I   K  ++ A             V+AG+   F     +V        +Q+K++++ +
Sbjct: 767 IHAKKQTVATA-------------VIAGIAFSFMCFVMLVMALYRVRKVQKKEQKREK 811

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 156/557 (28%), Positives = 237/557 (42%), Gaps = 114/557 (20%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTG-----FDQHP 61
           E P+ ++    LK L L+SN L G+IP+ L      +   ++LS N L+G     FD   
Sbjct: 344 EIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSG--SLEAIDLSGNLLSGTIEEVFDGCS 401

Query: 62  SV-------------FP---WSSGEFTLDLSSNFLQGPIPA---PPTKTRHYLVSKNNLT 102
           S+              P   W      LDL SN   G IP      T    +  S N L 
Sbjct: 402 SLGELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLE 461

Query: 103 GEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK 162
           G +P+ I N +SL  L LSDN L+GE+PR +G  +       +L +++++ N+ QG+IP 
Sbjct: 462 GYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLT-------SLSVLNLNANMFQGKIPV 514

Query: 163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKE------HKMECG 216
            L +C  L  +DLG+N +    P  +  L++L  LVL  NN  G I        H++E  
Sbjct: 515 ELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIE-- 572

Query: 217 FPKLR------IVDLSNNSFTGNLPSKYFQCWNAMKF----------VNASQLRYMRNFL 260
            P L       I DLS N  +G +P +  +C   ++           + AS  R     +
Sbjct: 573 MPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTI 632

Query: 261 SSYFSFDFYGYFPHYY------YSLTMSNK---GQMLSYEKIPYILTAVILSSNGFHGEI 311
                    G  P           L ++N    G +     +   L  + L+ N   G +
Sbjct: 633 LDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPV 692

Query: 312 PTSIANLKGLQVLSLANNNLEGH------------------------IPSCFGDLTKLES 347
           P S+ NLK L  + L+ NNL G                         IPS  G+LT+LE 
Sbjct: 693 PASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEY 752

Query: 348 LDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP 407
           LD+S N  SG+IP ++ GL  LEF N++ NNL G +P          +   GN  LCG+ 
Sbjct: 753 LDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRV 812

Query: 408 LFKECENSEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFL 467
           +  +C          +I  +K  L  A+             +AGL+LGF     +  + L
Sbjct: 813 VGSDC----------KIEGTK--LRSAWG------------IAGLMLGFTIIVFVFVFSL 848

Query: 468 EKLGMQQKKRRKNRRRR 484
            +  M ++ ++++   R
Sbjct: 849 RRWAMTKRVKQRDDPER 865

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/481 (30%), Positives = 204/481 (42%), Gaps = 95/481 (19%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTG------FDQH 60
           E P  +     L++L L  N ++G +P  L N +      LNL  N L G      F Q 
Sbjct: 308 EIPMDIGNLSSLRSLQLHINNINGTVPLSLANCT--KLVKLNLRVNQLGGGLTELEFSQL 365

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSK---NNLTGEIPSWICNLSSLYI 117
            S+         LDL +N   G +P      +     +   N LTGEI   +  L SL  
Sbjct: 366 QSLK-------VLDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEISPQVLELESLSF 418

Query: 118 LDLSDN---NLSGELPRCLG-----------NFSDTFMNGS----------NLGIIDMSH 153
           + LSDN   N++G L    G           NF D  +              L I  +  
Sbjct: 419 MGLSDNKLTNITGALSILQGCRKLSTLILAKNFYDETVPSKEDFLSPDGFPKLRIFGVGA 478

Query: 154 NLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKM 213
             L+G IP  L N   +E++DL  N+ + + P WLGTL                      
Sbjct: 479 CRLRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWLGTL---------------------- 516

Query: 214 ECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFP 273
               P L  +DLS+N  TG LP + FQ               +R  +S   + + Y   P
Sbjct: 517 ----PDLFYLDLSDNLLTGELPKELFQ---------------LRALMSQKITENNYLELP 557

Query: 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG 333
            +     ++   Q   Y K+      + +  N   G IP  +  LK L +L L  NNL G
Sbjct: 558 IFLNPNNVTTNQQ---YNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSG 614

Query: 334 HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFD 393
            IP    +LT LE LDLSNN  SG IP  LT L FL +FNV++N+L GPIP   QF TF 
Sbjct: 615 SIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFP 674

Query: 394 SSSFDGNSGLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLV 453
            ++F+GN  LCG  L   C+ + A  N++    ++  L G      + IGY    V+ LV
Sbjct: 675 KANFEGNPLLCGGVLLTSCKPTRAKENDEL---NRTFLMG------IAIGYFLSFVSILV 725

Query: 454 L 454
           +
Sbjct: 726 V 726

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  162 bits (411), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 149/487 (30%), Positives = 224/487 (45%), Gaps = 68/487 (13%)

Query: 26  NKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLD---LSSNFLQG 82
           N + G++P  L N S  N   L+LS N  TG  + PS F        L+   +++N+L G
Sbjct: 361 NNISGSVPISLTNCS--NLRVLDLSSNEFTG--EVPSGFCSLQSSSVLEKLLIANNYLSG 416

Query: 83  PIPAPPTKTRHYL---VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDT 139
            +P    K +      +S N LTG IP  I  L  L  L +  NNL+G +P  +      
Sbjct: 417 TVPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESI------ 470

Query: 140 FMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVL 199
            ++G NL  + +++NLL G +P+S++ C  +  I L +N +    P  +G L +L IL L
Sbjct: 471 CVDGGNLETLILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQL 530

Query: 200 QSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYF-QCWNAMK-FVNASQLRYMR 257
            +N+  G I      C    L  +DL++N+ TGNLP +   Q    M   V+  Q  ++R
Sbjct: 531 GNNSLTGNIPSELGNC--KNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVR 588

Query: 258 NFLSSYFS-----FDFYG-------YFP--------HYYYSLTM---SNKGQMLSYEKIP 294
           N   +         +F G       +FP          Y  +TM   S+ G M+  +   
Sbjct: 589 NEGGTDCRGAGGLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLD--- 645

Query: 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354
                  LS N   G IP     +  LQVL+L +N L G IP  FG L  +  LDLS+N 
Sbjct: 646 -------LSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHND 698

Query: 355 FSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECEN 414
             G +P  L GL+FL   +VS+NNLTGPIP   Q  TF  + +  NSGLCG PL   C +
Sbjct: 699 LQGFLPGSLGGLSFLSDLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPL-PPCSS 757

Query: 415 SEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGIVGWFLEKLGMQQ 474
              P         +++              A G+ AG+V  F     ++        +Q+
Sbjct: 758 GSRPTRSHAHPKKQSI--------------ATGMSAGIVFSFMCIVMLIMALYRARKVQK 803

Query: 475 KKRRKNR 481
           K++++ +
Sbjct: 804 KEKQREK 810

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  162 bits (410), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 149/494 (30%), Positives = 223/494 (45%), Gaps = 98/494 (19%)

Query: 8   FPNFLKQQKHLKALDLSSNKLHGNIPKWL-------------------LNPSMQNFS--- 45
            P+ L Q  +LK LDL+ NKL G IP+ +                   ++P +   +   
Sbjct: 156 IPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPDLCQLTGLW 215

Query: 46  YLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPP--TKTRHYLVSKNNLTG 103
           Y ++  NSLTG    P      +    LDLS N L G IP      +     +  N L+G
Sbjct: 216 YFDVRNNSLTG--SIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLSG 273

Query: 104 EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS 163
           +IPS I  + +L +LDLS N LSG +P  LGN   TF        + +  N L G IP  
Sbjct: 274 KIPSVIGLMQALAVLDLSGNLLSGSIPPILGNL--TFTEK-----LYLHSNKLTGSIPPE 326

Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
           L N + L  ++L +N +    P  LG L++L  L + +N+  G I +H   C    L  +
Sbjct: 327 LGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSC--TNLNSL 384

Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSN 283
           ++  N F+G +P + FQ   +M ++N S             S +  G  P     + +S 
Sbjct: 385 NVHGNKFSGTIP-RAFQKLESMTYLNLS-------------SNNIKGPIP-----VELSR 425

Query: 284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
            G + + +          LS+N  +G IP+S+ +L+ L  ++L+ N++ G +P  FG+L 
Sbjct: 426 IGNLDTLD----------LSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLR 475

Query: 344 KLESLDLSNNWFSGQIPQQLTGLT-----------------------FLEFFNVSHNNLT 380
            +  +DLSNN  SG IP++L  L                         L   NVSHNNL 
Sbjct: 476 SIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLV 535

Query: 381 GPIPEANQFPTFDSSSFDGNSGLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEIV 440
           G IP+ N F  F   SF GN GLCG  L   C +S       +++ S+A + G       
Sbjct: 536 GDIPKNNNFSRFSPDSFIGNPGLCGSWLNSPCHDSRRTV---RVSISRAAILG------- 585

Query: 441 LIGYAGGVVAGLVL 454
            I   G V+  +VL
Sbjct: 586 -IAIGGLVILLMVL 598

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  161 bits (408), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 135/420 (32%), Positives = 198/420 (47%), Gaps = 42/420 (10%)

Query: 8   FPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWS 67
            P+ +     LK LDLS N++ G IP+        N +++++ +N  TG +    +F  S
Sbjct: 400 IPSSISNCTGLKLLDLSHNQMTGEIPRGF---GRMNLTFISIGRNHFTG-EIPDDIFNCS 455

Query: 68  SGEFTLDLSSNFLQG---PIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNN 124
           + E TL ++ N L G   P+     K R   VS N+LTG IP  I NL  L IL L  N 
Sbjct: 456 NLE-TLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNG 514

Query: 125 LSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTF 184
            +G +PR + N   T + G     + M  N L+G IP+ + +  +L ++DL NN+     
Sbjct: 515 FTGRIPREMSNL--TLLQG-----LRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQI 567

Query: 185 PAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNA 244
           PA    L  L  L LQ N F+G I           L   D+S+N  TG +P +       
Sbjct: 568 PALFSKLESLTYLSLQGNKFNGSIPASLKSLSL--LNTFDISDNLLTGTIPGELLASLKN 625

Query: 245 MKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQM---LSYEKIPYILTA-- 299
           M+      L +  N L+        G  P     L M  +  +   L    IP  L A  
Sbjct: 626 MQLY----LNFSNNLLT--------GTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACK 673

Query: 300 ----VILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354
               +  S N   G IP  +   +  +  L+L+ N+  G IP  FG++T L SLDLS+N 
Sbjct: 674 NVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNN 733

Query: 355 FSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCG--KPLFKEC 412
            +G+IP+ L  L+ L+   ++ NNL G +PE+  F   ++S   GN+ LCG  KPL K C
Sbjct: 734 LTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPL-KPC 792

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
359485824	973	PREDICTED: receptor-like protein 12-like	0.983	0.490	0.508	1e-131
359490156	886	PREDICTED: receptor-like protein 12-like	0.985	0.539	0.516	1e-130
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.977	0.275	0.495	1e-129
147766212	925	hypothetical protein VITISV_018438 [Viti	0.934	0.489	0.519	1e-124
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.975	0.243	0.478	1e-123
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.973	0.245	0.477	1e-122
359485822	993	PREDICTED: receptor-like protein 12-like	0.975	0.476	0.5	1e-122
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.987	0.477	0.474	1e-118
224140511	894	predicted protein [Populus trichocarpa]	0.981	0.532	0.477	1e-118
224140517	979	predicted protein [Populus trichocarpa]	0.940	0.465	0.485	1e-118

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/505 (50%), Positives = 332/505 (65%), Gaps = 28/505 (5%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           SCNL EFP+FL+ Q  L+ + LS NK+HG IPKW+ N S +    L LS+N LTGFDQ P
Sbjct: 474 SCNLTEFPDFLQNQHELEIITLSENKIHGPIPKWVWNISKETLVTLELSENFLTGFDQRP 533

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
            V PWS    TL L SN LQGP+P PP  T  YLVS N LTGEI   ICN++SL +LDLS
Sbjct: 534 FVLPWSKLH-TLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISPLICNMTSLELLDLS 592

Query: 122 DNNLSGELPRCLGNFSDTF---------MNG---------SNLGIIDMSHNLLQGRIPKS 163
            NNLSG +P+CL NFS +          ++G          NL +ID+  N  QG+IP+S
Sbjct: 593 SNNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTVSHNLNVIDLGDNQFQGQIPRS 652

Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
           L NC +LE + LGNN+I D FP WLG L +L +L+L+SN FHG I        FPKLRI+
Sbjct: 653 LVNCTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKLRII 712

Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVN-ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMS 282
           DLS+N F G+LPS+YFQ W+AMK  + AS LRYM+  +S             Y YS+TM+
Sbjct: 713 DLSDNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQ--ISPMIDLKNNVMITGYMYSMTMT 770

Query: 283 NKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDL 342
           NKG    YE+I     A+  S N F G+IPTSI +LKG+ +L+L  N+L GHIPS  G+L
Sbjct: 771 NKGMQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDLTGHIPSSLGNL 830

Query: 343 TKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSG 402
           T+LESLDLS N  SG+IP QLT LTFLEFFNVSHN+LTG IP+  QF TF+++SFDGN G
Sbjct: 831 TQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGKQFATFENASFDGNLG 890

Query: 403 LCGKPLFKECENSEA-PANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTG 461
           LCG PL +EC +SEA P      + SK   +  FDW+IVL+GY  G++ G+ +G+  ++ 
Sbjct: 891 LCGSPLSRECGSSEALPPTS---SSSKQGSTTKFDWKIVLMGYGSGLLIGVSIGYCLTSW 947

Query: 462 IVGWFLEKLGMQQKK--RRKNRRRR 484
              WF++ +G +Q+K  R++ R +R
Sbjct: 948 KHEWFVKTIGKRQRKWTRKEGRGQR 972

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/503 (51%), Positives = 332/503 (66%), Gaps = 25/503 (4%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           SCNL EFP+FL+ Q  L+ L LS NK+HG IPKW+ N S +N   L+LS N LTGF+QHP
Sbjct: 387 SCNLTEFPDFLQNQDELEVLFLSDNKIHGPIPKWMWNISQENLESLDLSGNLLTGFNQHP 446

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKT-RHYLVSKNNLTGEIPSWICNLSSLYILDL 120
            V PWS     L+L SN LQGP+P PP  T  +Y VS+N L GEI   ICN+SSL +LDL
Sbjct: 447 VVLPWSKLSI-LELDSNMLQGPLPIPPPSTIEYYSVSRNKLIGEISPLICNMSSLILLDL 505

Query: 121 SDNNLSGELPRCLGNFSDTF---------MNG---------SNLGIIDMSHNLLQGRIPK 162
           S NNLSG +P+CL N S +          ++G         +NL +ID+  N  QG+IP+
Sbjct: 506 SSNNLSGRIPQCLANLSKSLFILDLGSNNLDGPIPQTCTVPNNLRVIDLGENQFQGQIPR 565

Query: 163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRI 222
           S ANC +LE + LGNNQI D FP WLG L +L +L+L+SN FHG I        FPKLRI
Sbjct: 566 SFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHSNFRFPKLRI 625

Query: 223 VDLSNNSFTGNLPSKYFQCWNAMKFVN-ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM 281
           VDLS+N F G+LPS+YFQ W+AMK  + A+ LRYM+      F    YG+  HY YS+TM
Sbjct: 626 VDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQA--RPKFQIPGYGWTAHYMYSMTM 683

Query: 282 SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGD 341
           +N+G    YEKIP +  A+  S N F G+IPTSI NL G  +L+L +NNL GHIPS  GD
Sbjct: 684 TNRGMQRFYEKIPDVFIAIDFSGNNFKGQIPTSIGNLNGFHLLNLGSNNLTGHIPSSLGD 743

Query: 342 LTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNS 401
           LT+LESLDLS N  SG+IP QLT +TFL FFNVSHN+LTGPIP+ NQF TF ++SFDGN 
Sbjct: 744 LTQLESLDLSQNQLSGEIPLQLTRITFLAFFNVSHNHLTGPIPQGNQFTTFPNASFDGNL 803

Query: 402 GLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTG 461
           GLCG PL + C +SE  A+    + SK   +  FDW+ VL+GY  G+V G+ +G+  ++ 
Sbjct: 804 GLCGSPLSRACGSSE--ASPPTSSSSKQGSTSEFDWKFVLMGYGSGLVIGVSIGYYLTSW 861

Query: 462 IVGWFLEKLGMQQKKRRKNRRRR 484
              WF++  G +Q+K  +  RR 
Sbjct: 862 KHEWFVKTFGKRQRKWTRKERRH 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/501 (49%), Positives = 327/501 (65%), Gaps = 27/501 (5%)

Query: 2    SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
            SCNL EFP+FL+ Q  L+ L LS+NK+HG IPKW+ N   +  S ++L+ N LTGF+Q  
Sbjct: 1224 SCNLGEFPHFLRNQDELELLKLSNNKIHGKIPKWIWNIGKETLSLMDLAHNFLTGFEQPX 1283

Query: 62   SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
               PW S  + L+LSSN LQG +P PP+    Y V  N  TG+IP   CNLS L++LDLS
Sbjct: 1284 VXLPWXSLIY-LELSSNMLQGSLPVPPSSISTYFVENNRFTGKIPPLXCNLSLLHMLDLS 1342

Query: 122  DNNLSGELPRCLGNFSDT------------------FMNGSNLGIIDMSHNLLQGRIPKS 163
            +N LSG +P CL N  ++                  F  GS L +ID+S NLL+G +P+S
Sbjct: 1343 NNTLSGMIPECLSNLXNSLSVLNLXGNNFHGAIPQAFEVGSKLKMIDLSQNLLEGPVPRS 1402

Query: 164  LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
            L NC VLE ++LGNNQI DTFP WLG L EL +L+L+SN FHG I + +    FPKLRI+
Sbjct: 1403 LTNCTVLESLNLGNNQISDTFPFWLGALPELQVLILRSNRFHGAIGKPRTNFEFPKLRII 1462

Query: 224  DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSN 283
            DLS NSF+GNLPS YF  W AMK ++A    YM+   SS FS   Y  + +Y YS+TM+N
Sbjct: 1463 DLSYNSFSGNLPSVYFLDWIAMKSIDADNFTYMQ--ASSGFSTQTYKLYDNYTYSMTMTN 1520

Query: 284  KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
            KG    YEKIP I  A+  SSN F GEIPTSI  LKGL +L+ + N+L G IP+   +LT
Sbjct: 1521 KGMERVYEKIPGIFRAIDFSSNKFKGEIPTSIGTLKGLHLLNFSXNSLTGRIPTSLRNLT 1580

Query: 344  KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
            +LE+LDLS N   G+IPQQLT +TFL FFNVSHNNLTGPIP+  QF TF S S++GN GL
Sbjct: 1581 ELEALDLSQNNLLGEIPQQLTEMTFLGFFNVSHNNLTGPIPQXKQFDTFQSDSYEGNPGL 1640

Query: 404  CGKPLFKECEN----SEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFS 459
            CG PL ++C N    S  P+  +Q  D +   +  FD ++VL+GY   +V G+++G+ F+
Sbjct: 1641 CGNPLIRKCGNPKQASPQPSTSEQGQDLEP--ASXFDRKVVLMGYXSXLVFGVIIGYIFT 1698

Query: 460  TGIVGWFLEKLGMQQKKRRKN 480
            T    WF++  G +Q+++ +N
Sbjct: 1699 TRKHEWFVKTFGRRQQQQERN 1719

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/479 (51%), Positives = 310/479 (64%), Gaps = 26/479 (5%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           SCNL EFP+FL+ Q  L  L L++NK+HG IPKW+ N S +N   L+LS N LT FD HP
Sbjct: 453 SCNLTEFPDFLRNQDELAVLSLANNKIHGLIPKWIWNISQENLGTLDLSXNLLTXFDXHP 512

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKT-RHYLVSKNNLTGEIPSWICNLSSLYILDL 120
            V PWS     L L SN LQGP+P PP  T  +Y VS+N L GEI   ICN+SSL ILDL
Sbjct: 513 VVLPWSRLSI-LMLDSNMLQGPLPIPPPSTXEYYSVSRNKLIGEISPLICNMSSLMILDL 571

Query: 121 SDNNLSGELPRCLGNFSDTF---------MNG---------SNLGIIDMSHNLLQGRIPK 162
           S NNLSG +P+CL N S +          ++G         +NL +ID+  N  QG+IP+
Sbjct: 572 SSNNLSGRIPQCLANLSKSLSVLDLGSNSLDGPIPQTCTVTNNLRVIDLGENQFQGQIPR 631

Query: 163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRI 222
           S ANC +LE + LGNNQI D FP WLG L +L +L+L+SN FHG I        FPKLRI
Sbjct: 632 SFANCMMLEHLVLGNNQIBDIFPFWLGALPQLQVLILRSNXFHGAIGSWHXNFRFPKLRI 691

Query: 223 VDLSNNSFTGNLPSKYFQCWNAMKFVN-ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM 281
           VDLS+N F G+LPS+YFQ W+AMK  + A+ LRYM+      F    Y +  HY YSLTM
Sbjct: 692 VDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQA--RXEFXBLGYTWTGHYLYSLTM 749

Query: 282 SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGD 341
            NKG    YEKIP I  A+  S N F G+IP S  NLKGL +L+L +NNL GHIPS  G+
Sbjct: 750 XNKGMQRFYEKIPDIFIAIDFSGNNFKGQIPISTGNLKGLHLLNLGDNNLTGHIPSSLGN 809

Query: 342 LTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNS 401
           L +LESLDLS N  SG+IP QLT +TFL FFNVSHN+LTG IP+ NQF TF ++SFDGN 
Sbjct: 810 LPRLESLDLSQNQLSGEIPLQLTRITFLAFFNVSHNHLTGTIPQGNQFTTFPNASFDGNP 869

Query: 402 GLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFST 460
           GLCG  L + C + EA       + SK   +  FDW+ VL+GY  G+V G+ +G+  ++
Sbjct: 870 GLCGSTLSRACGSFEA---SPPSSSSKQGSTSEFDWKFVLMGYGSGLVIGVSIGYCLTS 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/495 (47%), Positives = 313/495 (63%), Gaps = 22/495 (4%)

Query: 2    SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
            SCNL EFP+FL+ Q  LK L LS NK+HG IPKW+ N   +    ++LS N LT F+Q P
Sbjct: 1453 SCNLSEFPHFLRNQDELKFLTLSDNKIHGQIPKWMWNMGKETLWVMDLSNNLLTCFEQAP 1512

Query: 62   SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
             V PW +    L+LS N LQG +P PP+    Y V  N L G+ PS IC+L  L+ILDLS
Sbjct: 1513 VVLPWITLR-VLELSYNQLQGSLPVPPSSISDYFVHNNRLNGKFPSLICSLHHLHILDLS 1571

Query: 122  DNNLSGELPRCL------------------GNFSDTFMNGSNLGIIDMSHNLLQGRIPKS 163
            +NNLSG +P+CL                  G+   TF +   L +ID S+N L+G+IP+S
Sbjct: 1572 NNNLSGMIPQCLSDSSDSLSVLNLRGNNFHGSIPQTFTSQCRLKMIDFSYNQLEGQIPRS 1631

Query: 164  LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
            L NC  LEI++LGNNQI DTFP WLG+  EL +L+L+ N FHG I+  +    FP L I+
Sbjct: 1632 LGNCKELEILNLGNNQINDTFPFWLGSFPELQLLILRHNRFHGAIENPRANFEFPTLCII 1691

Query: 224  DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSN 283
            DLS N+F GNLP+ YF  W AM  V+     YM++ ++ +     Y  + +Y YS+TM+N
Sbjct: 1692 DLSYNNFAGNLPAGYFLTWVAMSRVDEENFSYMQS-MTGFVLIRTYRLYENYNYSMTMTN 1750

Query: 284  KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
            KG    Y KIP    A+ LSSN F GEIP SI  L+GL +L++++N+L GHIPS  G+L 
Sbjct: 1751 KGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPSFLGNLA 1810

Query: 344  KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
            +LE+LDLS N  SG+IPQQL G+TFLEFFNVSHN+L GPIP+  QF TF + S++GN GL
Sbjct: 1811 QLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSYEGNPGL 1870

Query: 404  CGKPLFKECENSEAPANEDQIADSKALLSGAFDWE--IVLIGYAGGVVAGLVLGFNFSTG 461
            CG PL KECENS++ A           L      E  IVL+GY  G+V G+ +G+  +T 
Sbjct: 1871 CGNPLSKECENSKSTAPPPPTDKHGGDLESGRKVELMIVLMGYGSGLVVGMAIGYTLTTR 1930

Query: 462  IVGWFLEKLGMQQKK 476
               WF++  G +Q+K
Sbjct: 1931 KHEWFVKTFGKRQRK 1945

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/494 (47%), Positives = 311/494 (62%), Gaps = 22/494 (4%)

Query: 2    SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
            SCNL EFP+FL+ Q  LK L LS NK+HG IPKW+ N   +    ++LS N LT F+Q P
Sbjct: 1431 SCNLSEFPHFLRNQDELKFLTLSDNKIHGQIPKWMWNMGKETLWVMDLSNNLLTXFEQAP 1490

Query: 62   SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
             V PW +    L+LS N LQG +P PP     Y V  N L G+ PS IC+L  L+ILDLS
Sbjct: 1491 VVLPWITLR-VLELSYNQLQGSLPVPPXSISDYFVHNNRLNGKXPSLICSLHHLHILDLS 1549

Query: 122  DNNLSGELPRCLGNFSD------------------TFMNGSNLGIIDMSHNLLQGRIPKS 163
            +NNLSG +P+CL + SD                  TF +   L +ID S+N L+G+IP+S
Sbjct: 1550 NNNLSGMIPQCLXDSSDSLSVLNLRGNNFHGSIPQTFTSQCRLKMIDFSYNQLEGQIPRS 1609

Query: 164  LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
            L NC   EI++LGNNQI DTFP WLG+L EL +L+L+ N FHG I+  +    FP L I+
Sbjct: 1610 LXNCKEXEILNLGNNQINDTFPFWLGSLPELQLLILRHNRFHGAIESPRANFEFPTLCII 1669

Query: 224  DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSN 283
            DLS N F GNLP+ YF  W AM  V+     YM++ ++ +     Y  + +Y YS+TM+N
Sbjct: 1670 DLSYNXFAGNLPAGYFLTWVAMSRVDEEHFSYMQS-MTGFVLIRTYRLYENYNYSMTMTN 1728

Query: 284  KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
            KG    Y KIP    A+ LSSN F GEIP SI  L+GL +L++++N+L GHIPS  G+L 
Sbjct: 1729 KGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPSFLGNLA 1788

Query: 344  KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
            +LE+LDLS N  SG+IPQQL G+TFLEFFNVSHN+L GPIP+  QF TF + S++GN GL
Sbjct: 1789 QLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSYEGNPGL 1848

Query: 404  CGKPLFKECENSEAPANEDQIADSKALLSGAFDWE--IVLIGYAGGVVAGLVLGFNFSTG 461
            CG PL KEC NS++ A+          L      E  IVL+GY  G+V G+ +G+  +T 
Sbjct: 1849 CGNPLSKECGNSKSTASSPPTYKHGGDLESGRKVELMIVLMGYGSGLVVGMAIGYTLTTR 1908

Query: 462  IVGWFLEKLGMQQK 475
               WF++  G +Q+
Sbjct: 1909 KHEWFVKTFGKRQR 1922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/504 (50%), Positives = 319/504 (63%), Gaps = 31/504 (6%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           SCNL EFP+FL+ Q+ L+ L LS+NK+HG IPKW+ N S +    L LS N L+GF Q P
Sbjct: 495 SCNLTEFPDFLQNQQELEVLILSTNKIHGPIPKWMWNISKETLEALFLSNNFLSGFSQVP 554

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
            V PWS     L+LSSN LQG +P PP+ T  Y VS+N L GEIPS ICNL+SL +LDLS
Sbjct: 555 DVLPWSRMSI-LELSSNMLQGSLPVPPSSTVEYSVSRNRLAGEIPSLICNLTSLSLLDLS 613

Query: 122 DNNLSGELPRCL------------------GNFSDTFMNGSNLGIIDMSHNLLQGRIPKS 163
            NNLSG +P+C                   G    T  N SNL +ID+S N LQG+IPKS
Sbjct: 614 GNNLSGSIPQCFTKLSSSLSILNLRRNNLNGPIPQTCTNTSNLRMIDLSENQLQGQIPKS 673

Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
           LA+C +LE + LGNN I D FP WLG+L  L +L+L+ N FHG I   K    F KLRI+
Sbjct: 674 LASCMMLEELVLGNNLINDIFPFWLGSLPRLQVLILRFNRFHGAIGSPKTNFEFSKLRII 733

Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSN 283
           DLS N FTGNLPS+Y + W+AM+ V+A  L Y++  +   F    Y +   Y +S TM+N
Sbjct: 734 DLSYNGFTGNLPSEYLKNWDAMRIVDAENLTYIQ--VDEEFEVPQYSWEEPYPFSTTMTN 791

Query: 284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
           KG    YE IP IL A+ LSSN FHGEIP SI N  GL+ L+L+NN L G IP+   +LT
Sbjct: 792 KGMTREYELIPDILIAIDLSSNRFHGEIPESIGNPNGLRWLNLSNNALIGAIPTSLANLT 851

Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
            LE+LDLS N  S +IPQQL  LTFL FFNVSHN+LTGPIP+  QF TF  +SFDGN GL
Sbjct: 852 LLEALDLSQNKLSREIPQQLVQLTFLAFFNVSHNHLTGPIPQGKQFATFSRASFDGNPGL 911

Query: 404 CGKPLFKECENSE----APANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFS 459
           CG PL + C +SE     P++  Q + S+      FDW+ VL+G   G+V G+ +G+  +
Sbjct: 912 CGSPLSRACGSSEQSPPTPSSSKQGSTSE------FDWKFVLMGCGSGLVIGVSIGYCLT 965

Query: 460 TGIVGWFLEKLGMQQKKRRKNRRR 483
           +    WF++  G Q  K  +  RR
Sbjct: 966 SWKHEWFVKTFGKQHTKWTRKERR 989

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/508 (47%), Positives = 308/508 (60%), Gaps = 29/508 (5%)

Query: 2    SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
            SCNL EFP+FL+ Q  L  L LS NK+HG IPKW+ N S +    L LS N LTGFDQ P
Sbjct: 498  SCNLTEFPDFLQNQDELVVLSLSDNKIHGPIPKWVWNISKETLEALRLSGNFLTGFDQRP 557

Query: 62   SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
             V PWS   ++L L  N LQGP+P PP  T  Y V  N LTGEI   ICN+SSL +LDL+
Sbjct: 558  VVLPWSR-LYSLQLDFNMLQGPLPIPPPSTILYSVYGNKLTGEISPLICNMSSLKLLDLA 616

Query: 122  DNNLSGELPRCLGNFSDTF---------MNG---------SNLGIIDMSHNLLQGRIPKS 163
             NNLSG +P+CL NFS +          ++G         +NL +ID+  N  +G+IP+S
Sbjct: 617  RNNLSGRIPQCLANFSKSLSVLDLGSNSLDGPIPQTCTVPNNLRVIDLGENQFRGQIPRS 676

Query: 164  LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
             ANC +LE + LGNNQI D FP WLG L +L +L+L+SN FHG I        FPKL I+
Sbjct: 677  FANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKLHII 736

Query: 224  DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRN--------FLSSYFSFDFYGYFPHY 275
            DLS N FTGNLPS+YFQ  +AM+ ++  QL Y +           + Y   D  G  P  
Sbjct: 737  DLSYNEFTGNLPSEYFQNLDAMRILDGGQLGYKKANVVQLPIVLRTKYMMGDMVG--PRN 794

Query: 276  YYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335
               + M  KG    Y+ IPY L  + LSSN F GEIP SI  L GL  L+L+NN L G I
Sbjct: 795  DTHIKMMIKGMRREYKNIPYNLMNIDLSSNKFDGEIPESIGGLVGLYSLNLSNNALTGPI 854

Query: 336  PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSS 395
             +   +LT+LE+LDLS N   G+IPQQLT LTFL  F+VSHN+LTGPIP+  QF TF +S
Sbjct: 855  LTSLANLTQLEALDLSQNKLLGEIPQQLTQLTFLAVFSVSHNHLTGPIPQGKQFNTFSNS 914

Query: 396  SFDGNSGLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLG 455
            SFDGN GLCG PL + C +S+  +     +         FDW+IVL+GY  G+V G+ +G
Sbjct: 915  SFDGNPGLCGSPLSRVCGSSKGWSLTPPPSTFGNGSPSDFDWKIVLMGYGSGIVMGVSIG 974

Query: 456  FNFSTGIVGWFLEKLGMQQKKRRKNRRR 483
            +  +     WF++  G QQ+K RK  ++
Sbjct: 975  YCLTVWKHEWFVKTFGRQQRKLRKKEQK 1002

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/505 (47%), Positives = 316/505 (62%), Gaps = 29/505 (5%)

Query: 3   CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
           CNL E P+FL+ Q  L+ L++  NKL G+IPKW +N S      L+L+ N LTGF+Q   
Sbjct: 395 CNLGELPSFLRDQNQLEILEIGDNKLEGHIPKWFMNVSTITLEALSLAGNLLTGFEQSFD 454

Query: 63  VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
           V PW++   +L L+SN  QG +P PP     Y VS N L GEIP  ICNL+SL +LDLS+
Sbjct: 455 VLPWNNLR-SLSLNSNKFQGSLPIPPPAIYEYQVSNNKLNGEIPEVICNLTSLSVLDLSN 513

Query: 123 NNLSGELPRCLGNFS------------------DTFMNGSNLGIIDMSHNLLQGRIPKSL 164
           NNLSG+LP CLGN S                  +TF +G +L ++D+S N L+G+IPKSL
Sbjct: 514 NNLSGKLPPCLGNKSSTASVLNLRNNSFSGDIPETFTSGCSLRVVDLSQNKLEGKIPKSL 573

Query: 165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVD 224
           ANCA LEI++L  N I D FP+WLG L +L +L+ +SN  HG I + +    FP+L+IVD
Sbjct: 574 ANCAELEILNLEQNNINDVFPSWLGMLPDLKVLIFRSNGLHGVIGKPETNVDFPRLQIVD 633

Query: 225 LSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNK 284
           LSNNSF G LP +YF+ W AMK V+   L YM+    +            Y YS+TM+NK
Sbjct: 634 LSNNSFKGKLPLEYFRNWTAMKNVHNEPLIYMQ--ADTSIDISRASVTNPYPYSMTMTNK 691

Query: 285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTK 344
           G M  YEKI   L+A+ LSSNGF G IP  + +LK L +L+L+NN L G IP    +L +
Sbjct: 692 GVMTLYEKIQDSLSAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGRIPPSLSNLKE 751

Query: 345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLC 404
           LE+LDLS+N  SG+IP QL  LTFLE FNVSHN L+GPIP  NQF  FDS+SFD NSGLC
Sbjct: 752 LEALDLSHNKLSGEIPVQLAQLTFLEIFNVSHNFLSGPIPRGNQFGAFDSTSFDANSGLC 811

Query: 405 GKPLFKECEN--SEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNFSTGI 462
           G+PL K+C N     PA E+       L    F W++V+IGYA G++ G++LG   +T  
Sbjct: 812 GEPLSKKCGNDVDPLPAPEEDGGSGYPL---EFGWKVVVIGYATGLLIGVILGCVMNTRK 868

Query: 463 VGWFLEKLGMQ---QKKRRKNRRRR 484
             W ++    +   + +  KNR RR
Sbjct: 869 YEWVVKNYFARWQNKGQHLKNRLRR 893

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/490 (48%), Positives = 312/490 (63%), Gaps = 34/490 (6%)

Query: 3   CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
           CN+ E P FL+ Q  L+ L++  NKL G+IPKW +N S      L+L+ N LTGF+Q   
Sbjct: 491 CNIGELPGFLRDQNQLEILEIGDNKLEGHIPKWFMNMSTITLEALSLAGNLLTGFEQSFD 550

Query: 63  VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
           V PW++   +L L+SN  QG +P PP     Y VS N L GEIP  ICNL+SL++LDLS 
Sbjct: 551 VLPWNNLR-SLSLNSNKFQGSLPIPPPAIFEYKVSNNKLNGEIPEVICNLTSLFVLDLSI 609

Query: 123 NNLSGELPRCLGNFS------------------DTFMNGSNLGIIDMSHNLLQGRIPKSL 164
           NNLSG+LP+CLGN S                  +TF +G +L ++D S N L+G+IPKSL
Sbjct: 610 NNLSGKLPQCLGNKSSTASVLNLHNNSFSGDIPETFTSGCSLRVVDFSQNKLEGKIPKSL 669

Query: 165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVD 224
           ANC  LEI++L  N I D FP+WLG L +L +++L+SN  HG I + +    FP+L+IVD
Sbjct: 670 ANCTELEILNLEQNNINDVFPSWLGVLPDLRVMILRSNGLHGVIGKPETNVEFPRLQIVD 729

Query: 225 LSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMR---NFLSSYFSFDFYGYFPHYYYSLTM 281
           LSNNSF G LP +YF+ W AMK V    L YM+   +FL+S+ + +       Y YS+TM
Sbjct: 730 LSNNSFKGKLPLEYFRNWTAMKNVRNEDLIYMQANTSFLTSHNTME-----KQYEYSMTM 784

Query: 282 SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGD 341
           +NKG M  YEKI   LTA+ LSSNGF G IP  + +LK L +L+L+NN L G IP    +
Sbjct: 785 TNKGVMRLYEKIQDSLTAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGGIPPSLSN 844

Query: 342 LTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNS 401
           L +LE+LDLS+N  SG+IP QL  LTFL  FNVSHN L+G IP  NQF TFD++SFD N 
Sbjct: 845 LKELEALDLSHNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTSFDANP 904

Query: 402 GLCGKPLFKECENSE---APANEDQIADSKALLSGAFDWEIVLIGYAGGVVAGLVLGFNF 458
           GLCG+PL KEC N E     A ED+ + S         W++V+IGYA G+V G++LG   
Sbjct: 905 GLCGEPLSKECGNGEDSLPAAKEDEGSGSPP----ESRWKVVVIGYASGLVIGVILGCAM 960

Query: 459 STGIVGWFLE 468
           +T    W +E
Sbjct: 961 NTRKYEWLVE 970

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.874	0.416	0.408	2.4e-83
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.878	0.574	0.417	5.8e-82
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.820	0.400	0.415	6.6e-81
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.940	0.774	0.363	3e-78
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.828	0.507	0.414	4.3e-77
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.863	0.470	0.386	5.1e-74
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.855	0.513	0.388	5.1e-74
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.865	0.486	0.375	2.8e-73
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.839	0.508	0.385	7.5e-73
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.843	0.609	0.386	1.2e-72

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 189/463 (40%), Positives = 269/463 (58%)

Query:     1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
             RSCN+ +FP F+++ ++L+ LDLS+NK+ G +P WL    M   + ++LS NSL+GF  H
Sbjct:   526 RSCNITDFPEFIRKGRNLQILDLSNNKIKGQVPDWLWR--MPTLNSVDLSNNSLSGF--H 581

Query:    61 PSVFPWSSGEFT-LDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILD 119
              SV      + T +DLSSN  QGP+  P    R++  S NN TG+IP  IC LSSL ILD
Sbjct:   582 VSVKASPESQLTSVDLSSNAFQGPLFLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEILD 641

Query:   120 LSDNNLSGELPRCL------------------GNFSDTFMNGSNLGIIDMSHNLLQGRIP 161
             LS+NNL+G LP CL                  G+  + FMN + L  +D+SHN ++G++P
Sbjct:   642 LSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLP 701

Query:   162 KSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKME---CGFP 218
              SL  C+ LE++++G+N+I D FP  L +L +L +LVL SN FHG +  H ++    GFP
Sbjct:   702 GSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHGTL--HNVDGVWFGFP 759

Query:   219 KLRIVDLSNNSFTGNLPSKYFQCWNAM--KFVNASQLRYMRNXXXXXXXXXXXXXXPHYY 276
             +L+I+D+S+N F G LPS YF  W AM  K  N  +  Y++N                YY
Sbjct:   760 QLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEYIQNPSVYGSSLG-------YY 812

Query:   277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336
              SL + +KG  +  E++  I TA+ LS N  HG+IP SI  LK L++L++++N   GHIP
Sbjct:   813 TSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIP 872

Query:   337 SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSS 396
             S   +L  LESLD+S N  SG+IP +L  L+ L + NVSHN L G IP+  QF     SS
Sbjct:   873 SSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSS 932

Query:   397 FDGNSGLCGKPLFKECEN--SEAPANEDQIADSKALLSGAFDW 437
             ++GN GL G  L   C +     P   + +   +     +F W
Sbjct:   933 YEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEEESFSW 975

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 189/453 (41%), Positives = 247/453 (54%)

Query:     2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
             SCN+ EFP FL+ Q  L+ LD+S+N++ G +P+WL   S+    Y+N+S NS  GF+   
Sbjct:   262 SCNISEFPKFLRNQTSLEYLDISANQIEGQVPEWLW--SLPELRYVNISHNSFNGFEGPA 319

Query:    62 SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNN-LTGEIPSWICNLSSLYILDL 120
              V         LD+SSN  Q P P  P  + +YL S NN  +GEIP  IC L +L IL L
Sbjct:   320 DVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDNLRILVL 379

Query:   121 SDNNLSGELPRCLGNFS--DTFMNGSNL-GII------------DMSHNLLQGRIPKSLA 165
             S+NN SG +PRC  N       +  +NL GI             D+ HNL  G +PKSL 
Sbjct:   380 SNNNFSGSIPRCFENLHLYVLHLRNNNLSGIFPEEAISHHLQSFDVGHNLFSGELPKSLI 439

Query:   166 NCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDL 225
             NC+ +E +++ +N+I DTFP+WL  L  L ILVL+SN F+G I        F +LRI D+
Sbjct:   440 NCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIFDI 499

Query:   226 SNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSNKG 285
             S N FTG LPS YF  W+ M  V     R ++                 Y+ S+ + NKG
Sbjct:   500 SENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQ-------YTVTGIDRDFYHKSVALINKG 552

Query:   286 QMLSYEKIPYILTAVI-LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTK 344
               +      + +   I +S N   G+IP SI  LK + VLS++NN   GHIP    +L+ 
Sbjct:   553 LKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSN 612

Query:   345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLC 404
             L+SLDLS N  SG IP +L  LTFLE+ N SHN L GPIPE  Q  T DSSSF  N GLC
Sbjct:   613 LQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLC 672

Query:   405 GKPLFKECENSEAPANEDQIADSKALLSGAFDW 437
             G PL K+C   E    ++Q  D K      F W
Sbjct:   673 GAPLLKKCGGEEEATKQEQDED-KEEEDQVFSW 704

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 182/438 (41%), Positives = 257/438 (58%)

Query:     3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
             CN+ EFP F++ Q++L ++DLS+N + G +P WL    +   S ++LS NSL GF+   S
Sbjct:   508 CNIIEFPEFIRNQRNLSSIDLSNNNIKGQVPNWLWR--LPELSTVDLSNNSLIGFNG--S 563

Query:    63 VFPWSSGEFT-LDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
             +   S  +   LDLSSN  QGP+  PP   +++L S NN TG IP  IC L++  ILDLS
Sbjct:   564 LKALSGSKIVMLDLSSNAFQGPLFMPPRGIQYFLGSYNNFTGYIPPSICGLANPLILDLS 623

Query:   122 DNNLSGELPRCL------------------GNFSDTFMNGSNLGIIDMSHNLLQGRIPKS 163
             +NNL G +PRCL                  G+  + FMN   L  +D+SHN L+G++P S
Sbjct:   624 NNNLHGLIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPAS 683

Query:   164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKME---CGFPKL 220
             LA C+ LEI+++ +N I DTFP WL +L +L +LVL+SNNF G +  H ++    GFP L
Sbjct:   684 LAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTL--HNVDGVWFGFPLL 741

Query:   221 RIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLT 280
             RI D+S+N F G LPS YF  W A+   + ++L+Y+ +                YY SL 
Sbjct:   742 RITDVSHNDFVGTLPSDYFMNWTAIS-KSETELQYIGDPEDYG-----------YYTSLV 789

Query:   281 MSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFG 340
             + NKG  +  ++I    T +  + N   G+IP S+  LK L VL+L++N   GHIPS   
Sbjct:   790 LMNKGVSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLA 849

Query:   341 DLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGN 400
             +LT LESLD+S N   G+IP +L  L+ LE+ NVSHN L G IP+  QF   + SS++GN
Sbjct:   850 NLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGN 909

Query:   401 SGLCGKPLFKECENSEAP 418
              G+ G  L   C +  AP
Sbjct:   910 PGIYGSSLKDVCGDIHAP 927

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 178/490 (36%), Positives = 266/490 (54%)

Query:     3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
             CN+ EFP FLK  K L  LDLSSN++ GN+P W+   S+     L+LS NS TGF+    
Sbjct:   109 CNISEFPRFLKSLKKLWYLDLSSNRIKGNVPDWIW--SLPLLVSLDLSNNSFTGFNGSLD 166

Query:    63 VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
                 +S    LD++ N  +G  P PP    +     N+ TG+IP  +CN +SL +LDLS 
Sbjct:   167 HVLANSSVQVLDIALNSFKGSFPNPPVSIINLSAWNNSFTGDIPLSVCNRTSLDVLDLSY 226

Query:   123 NNLSGELPRCLGNFS--------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168
             NN +G +P C+GNF+              D F +G+    +D+ +N L G +P+SL NC+
Sbjct:   227 NNFTGSIPPCMGNFTIVNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCS 286

Query:   169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIK--EHKMECGFPKLRIVDLS 226
              +  + + +N+I D+FP WL  L  L +L L+SN+FHG +   + +    FPKL+I+++S
Sbjct:   287 FIRFLSVDHNRINDSFPLWLKALPNLKVLTLRSNSFHGPMSPPDDQSSLAFPKLQILEIS 346

Query:   227 NNSFTGNLPSKYFQCWN--AMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSNK 284
             +N FTG+LP+ YF  W+  ++K  +  +L YM +                Y  +L +  K
Sbjct:   347 HNRFTGSLPTNYFANWSVKSLKMYDEERL-YMGDYSSDRFV---------YEDTLDLQYK 396

Query:   285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTK 344
             G  +   K+    +A+  S N   GEIP SI  LK L  L+L+NN+  GHIP  F ++T+
Sbjct:   397 GLYMEQGKVLTFYSAIDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTE 456

Query:   345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLC 404
             LESLDLS N  SG+IPQ+L  L++L + +VS N LTG IP+  Q      SSF+GNSGLC
Sbjct:   457 LESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLC 516

Query:   405 GKPLFKECENSEAPANEDQIADSKALLSGAFDWEXXXXXXXXXXXXXXXXXFNFSTGIVG 464
             G PL + C   +AP+ ++   + + +L    +W                     +    G
Sbjct:   517 GLPLEESCLREDAPSTQEPEEEEEEIL----EWRAAAIGYGPGVLFGLAIGHVVALYKPG 572

Query:   465 WFLEKLGMQQ 474
             WF++  G  +
Sbjct:   573 WFIKNNGQNR 582

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 178/429 (41%), Positives = 239/429 (55%)

Query:     2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPK--WLLNPSMQNFSYLNLSKNSLTGFDQ 59
             SCN+ EFP F+K  + L  LD+S+N++ G +P+  W L PSM    ++NLS+NS    + 
Sbjct:   312 SCNITEFPMFIKDLQRLWWLDISNNRIKGKVPELLWTL-PSML---HVNLSRNSFDSLEG 367

Query:    60 HPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILD 119
              P +   +S    LDLSSN  +G  P  P        S N  TG IP   C    L +LD
Sbjct:   368 TPKII-LNSSISELDLSSNAFKGSFPIIPPYVNIMAASNNYFTGGIPLIFCKRYRLSLLD 426

Query:   120 LSDNNLSGELPRCLGN---------FSDTFMNG------SNLGIIDMSHNLLQGRIPKSL 164
             LS+NN SG +PRCL N          S+  + G        L ++D+ HN + G++P+SL
Sbjct:   427 LSNNNFSGTIPRCLTNVSLGLEALKLSNNSLTGRLPDIEDRLVLLDVGHNQISGKLPRSL 486

Query:   165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVD 224
              NC  L+ +++  N I DTFP WL  L+ L+I+VL+SN FHG I   ++   F  LRI+D
Sbjct:   487 VNCTTLKFLNVEGNHINDTFPFWLKALTRLEIIVLRSNRFHGPISSPEVSLSFTALRIID 546

Query:   225 LSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYY-SLTMSN 283
             +S NSF G+LP  YF  W+A   VN  Q  Y                 P + Y S+ +  
Sbjct:   547 ISRNSFNGSLPQNYFANWSA-PLVNTPQ-GY--RWPEYTGDEHSKYETPLWSYPSIHLRI 602

Query:   284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
             KG+ +   KIP   T++  S N F G+IP SI +LK L VL L+NN+  G IPS    L 
Sbjct:   603 KGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIPSSLAKLK 662

Query:   344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
             +LESLDLS N  SG IPQ+L  LTFL + N+SHN LTG IP++ Q      SSF+GN  L
Sbjct:   663 QLESLDLSQNRISGNIPQELRELTFLGYVNMSHNRLTGQIPQSTQVGGQPKSSFEGNINL 722

Query:   404 CGKPLFKEC 412
             CG PL + C
Sbjct:   723 CGLPLQESC 731

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 172/445 (38%), Positives = 240/445 (53%)

Query:     1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLN-PSMQNFSYLNLSKNSLTGFDQ 59
             R C++ EFPN LK  K L  +D+S+N++ G IP+WL + P +Q+   + L  N  TGF  
Sbjct:   398 RHCDINEFPNILKTLKELVYIDISNNRMKGKIPEWLWSLPLLQS---VTLGNNYFTGFQG 454

Query:    60 HPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILD 119
                +   +S    L L SN  +G +P  P   + + V+ N+ T EIP  ICN SSL  +D
Sbjct:   455 SAEILV-NSSVLLLYLDSNNFEGALPDLPLSIKGFGVASNSFTSEIPLSICNRSSLAAID 513

Query:   120 LSDNNLSGELPRCL--------------GNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA 165
             LS NN +G +P CL              G+  D   +G++L  +D+SHN L G++P+S  
Sbjct:   514 LSYNNFTGPIPPCLRNLELVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKLPRSFV 573

Query:   166 NCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKE-HKMECGFPKLRIVD 224
             NC+ L+ + + NN+I DTFP WL  L  L +L L+SN F+G I   H+   GFP+LRI +
Sbjct:   574 NCSSLKFLSVINNRIEDTFPFWLKALPNLQVLTLRSNRFYGPISPPHQGPLGFPELRIFE 633

Query:   225 LSNNSFTGNLPSKYFQCWNAM-KFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSN 283
             +S+N FTG+LP  YF  W A  + +N     YM                  Y  +L +  
Sbjct:   634 ISDNKFTGSLPPNYFVNWKASSRTMNQDGGLYMVYEEKLFDEGGYG-----YTDALDLQY 688

Query:   284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
             KG  +   K      A+  S N   G+IP SI  LK L  ++++NN   GHIP    +L 
Sbjct:   689 KGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKALIAVNISNNAFTGHIPLSMANLE 748

Query:   344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
              LESLD+S N  SG IP  L  ++FL + NVSHN LTG IP+  Q      SSF+GN+GL
Sbjct:   749 NLESLDMSRNQLSGTIPNGLGSISFLAYINVSHNQLTGEIPQGTQITGQSKSSFEGNAGL 808

Query:   404 CGKPLFKECENSEAPANEDQIADSK 428
             CG PL + C  + AP    Q  + K
Sbjct:   809 CGLPLKESCFGTGAPPMYHQKQEDK 833

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 175/451 (38%), Positives = 237/451 (52%)

Query:     2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
             SC L EFP  LK    L+ +DLS+NK+ G +P+W  N  +     +NL  N  T  +   
Sbjct:   301 SCGLIEFPTILKNLTKLEHIDLSNNKIKGKVPEWFWN--LPRLRRVNLFNNLFTDLEGSE 358

Query:    62 SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
              V   SS    LDL+ N  +GP P PP          N+ TG IP   CN SSL ILDLS
Sbjct:   359 EVLVNSSVRL-LDLAYNHFRGPFPKPPLSINLLSAWNNSFTGNIPLETCNRSSLAILDLS 417

Query:   122 DNNLSGELPRCLGNFS------------------DTFMNGSNLGIIDMSHNLLQGRIPKS 163
              NNL+G +PRCL +F                   D F +G+ L  +D+ +N L G++P+S
Sbjct:   418 YNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRS 477

Query:   164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKE-HKMECGFPKLRI 222
             L NC++L  + + +N+I DTFP WL  L +L  L L+SN FHG I    +    FPKLRI
Sbjct:   478 LLNCSMLRFVSVDHNKIKDTFPFWLKALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRI 537

Query:   223 VDLSNNSFTGNLPSKYFQCWNAMKF-VNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLT- 280
             +++S+N+FTG+LP  YF  W A    +N     YM +              P+Y Y  T 
Sbjct:   538 LEISDNNFTGSLPPNYFVNWEASSLQMNEDGRIYMGDYNN-----------PYYIYEDTV 586

Query:   281 -MSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCF 339
              +  KG  +   K+      +  S N   G+IP SI  LK L  L+L+NN   GHIP   
Sbjct:   587 DLQYKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSL 646

Query:   340 GDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDG 399
              ++T+LESLDLS N  SG IP  L  L+FL + +V+HN L G IP+  Q      SSF+G
Sbjct:   647 ANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEG 706

Query:   400 NSGLCGKPLFKECENSEAPANEDQIADSKAL 430
             N+GLCG PL   C     P  +++  D + L
Sbjct:   707 NAGLCGLPLQGSCFAPPTPQPKEEDEDEEVL 737

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 166/442 (37%), Positives = 240/442 (54%)

Query:     3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
             C + EFPN LK  ++L  +D++SN++ G IP+WL   ++   S++++S NS  GF     
Sbjct:   387 CGIREFPNILKHLQNLIHIDITSNQIKGKIPEWLW--TLPQLSFVDISNNSFNGFQGSAE 444

Query:    63 VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
             VF   S    + L +N  +G +P  P     +    N+ TGEIP  ICN +SL ++DLS 
Sbjct:   445 VFVNLSVRILM-LDANNFEGALPTLPLSIIGFSAIHNSFTGEIPLSICNRTSLTMVDLSY 503

Query:   123 NNLSGELPRCLGNFS--------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168
             NN +G +P+CL NF               DTF   S+L  +D+ +N L G++P+SL NC+
Sbjct:   504 NNFTGPIPQCLSNFMFVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCS 563

Query:   169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKE-HKMECGFPKLRIVDLSN 227
              L  + + NN++ DTFP WL  L  L +L L+SN F+G I   H+   GFP+LRI ++++
Sbjct:   564 SLRFLSVDNNRVKDTFPFWLKALPNLRVLTLRSNKFYGPISPPHQGPLGFPELRIFEIAD 623

Query:   228 NSFTGNLPSKYFQCWNAMKFV-NASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSNKGQ 286
             N FTG+LP  +F  W A     N     YM                  Y  ++ +  KG 
Sbjct:   624 NMFTGSLPPSFFVNWKASALTKNEDGGLYMVYEYDKAANSPVRYT---YTDTIDLQYKGL 680

Query:   287 MLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE 346
              +  E++     A+  S N   G+IP SI  LK L  L+L+NN   GHIP  F +L  LE
Sbjct:   681 HMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLE 740

Query:   347 SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGK 406
             SLD+S N  SG IP  L  L+FL + +V+HN L G IP+  Q      SSF+GN+GLCG 
Sbjct:   741 SLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGL 800

Query:   407 PLFKECENSEAPANEDQIADSK 428
             PL + C +S  P  + +  D +
Sbjct:   801 PLQETCFDSSVPPIQPKQEDEE 822

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 170/441 (38%), Positives = 238/441 (53%)

Query:     3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
             C++ EFPN  K  ++L+ +D+S+N + G +P+W     +   S  NL  NSLTGF+    
Sbjct:   296 CDIIEFPNIFKTLQNLEHIDISNNLIKGKVPEWFWK--LPRLSIANLVNNSLTGFEGSSE 353

Query:    63 VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
             V   SS +  LD + N + G  P PP  + +     N+ TG IP  ICN SSL +LDLS 
Sbjct:   354 VLLNSSVQL-LDFAYNSMTGAFPTPPLGSIYLSAWNNSFTGNIPLSICNRSSLIVLDLSY 412

Query:   123 NNLSGELPRCLGNFS--------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168
             N  +G +P+CL N                D F +G+    +D+ +N L G++PKSL NC+
Sbjct:   413 NKFTGPIPQCLSNLKVVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKLPKSLLNCS 472

Query:   169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKE-HKMECGFPKLRIVDLSN 227
              L  + + NN+I DTFP WL  L  L +L L+SN F G +    +    FP+LRI++LS+
Sbjct:   473 SLRFLSVDNNRIEDTFPFWLKALPNLHVLTLRSNRFFGHLSPPDRGPLAFPELRILELSD 532

Query:   228 NSFTGNLPSKYFQCWNAMK-FVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMS--NK 284
             NSFTG+LP  +F  W A    +N     YM +               +Y Y  TM    K
Sbjct:   533 NSFTGSLPPNFFVNWKASSPKINEDGRIYMGDYKNA-----------YYIYEDTMDLQYK 581

Query:   285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTK 344
             G  +   K+    + +  S N   G+IP SI  LK L  L+L+NN   GHIP    ++T+
Sbjct:   582 GLFMEQGKVLTFYSTIDFSGNKLEGQIPESIGLLKELIALNLSNNAFTGHIPMSLANVTE 641

Query:   345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLC 404
             LESLDLS N  SG IP++L  L+FL + +V+HN L G IP+  QF     SSF+GN GLC
Sbjct:   642 LESLDLSRNQLSGNIPRELGSLSFLAYISVAHNQLKGEIPQGPQFSGQAESSFEGNVGLC 701

Query:   405 GKPLFKEC--ENSEAPANEDQ 423
             G PL   C    ++ P  ED+
Sbjct:   702 GLPLQGSCVAPPTKYPKEEDE 722

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 167/432 (38%), Positives = 240/432 (55%)

Query:     3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
             C L EFPN  K  K ++A+D+S+N+++G IP+WL   S+     +N+  NS  GF+    
Sbjct:   189 CGLKEFPNIFKTLKKMEAIDVSNNRINGKIPEWLW--SLPLLHLVNILNNSFDGFEGSTE 246

Query:    63 VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
             V   SS    L L SN  +G +P+ P     +    NN TGEIP  IC  +SL +LDL+ 
Sbjct:   247 VLVNSSVRILL-LESNNFEGALPSLPHSINAFSAGHNNFTGEIPLSICTRTSLGVLDLNY 305

Query:   123 NNLSGELPRCLGNFS--------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168
             NNL G + +CL N +              +TF+ GS++  +D+ +N L G++P+SL NC+
Sbjct:   306 NNLIGPVSQCLSNVTFVNLRKNNLEGTIPETFIVGSSIRTLDVGYNRLTGKLPRSLLNCS 365

Query:   169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKE-HKMECGFPKLRIVDLSN 227
              LE + + NN+I DTFP WL  L +L +L L SN F+G I   H+   GFP+LRI+++S+
Sbjct:   366 SLEFLSVDNNRIKDTFPFWLKALPKLQVLTLSSNKFYGPISPPHQGPLGFPELRILEISD 425

Query:   228 NSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYSLTMSNKGQM 287
             N FTG+L S+YF+ W A    +A    Y+                  +   + +  KG  
Sbjct:   426 NKFTGSLSSRYFENWKAS---SAMMNEYV-GLYMVYEKNPYGVVVYTFLDRIDLKYKGLN 481

Query:   288 LSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLES 347
             +   ++    +A+  S N   G IP SI  LK L  L+L+NN   GHIP    +L +L+S
Sbjct:   482 MEQARVLTSYSAIDFSRNLLEGNIPESIGLLKALIALNLSNNAFTGHIPQSLANLKELQS 541

Query:   348 LDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP 407
             LD+S N  SG IP  L  L+FL + +VSHN L G IP+  Q      SSF+GN GLCG P
Sbjct:   542 LDMSRNQLSGTIPNGLKQLSFLAYISVSHNQLKGEIPQGTQITGQLKSSFEGNVGLCGLP 601

Query:   408 LFKEC-ENSEAP 418
             L + C +NS +P
Sbjct:   602 LEERCFDNSASP 613

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029123001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (983 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	485
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-25
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (406), Expect = 3e-42
 Identities = 127/385 (32%), Positives = 177/385 (45%), Gaps = 54/385 (14%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
           E P  +     L  LDL  N L G IP  L N  ++N  YL L +N L+G    PS+F  
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN--LKNLQYLFLYQNKLSG-PIPPSIFSL 283

Query: 67  SSGEFTLDLSSNFLQGPIPAPPTKTRH----YLVSKNNLTGEIPSWICNLSSLYILDLSD 122
                +LDLS N L G IP    + ++    +L S NN TG+IP  + +L  L +L L  
Sbjct: 284 QK-LISLDLSDNSLSGEIPELVIQLQNLEILHLFS-NNFTGKIPVALTSLPRLQVLQLWS 341

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID 182
           N  SGE+P+ LG  +       NL ++D+S N L G IP+ L +   L  + L +N +  
Sbjct: 342 NKFSGEIPKNLGKHN-------NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394

Query: 183 TFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV---DLSNNSFTGNLPSKYF 239
             P  LG    L  + LQ N+F GE+        F KL +V   D+SNN+  G + S+ +
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPS-----EFTKLPLVYFLDISNNNLQGRINSRKW 449

Query: 240 QCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA 299
                    +   L   RN         F+G  P  + S  + N                
Sbjct: 450 D------MPSLQMLSLARN--------KFFGGLPDSFGSKRLEN---------------- 479

Query: 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQI 359
           + LS N F G +P  + +L  L  L L+ N L G IP       KL SLDLS+N  SGQI
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 360 PQQLTGLTFLEFFNVSHNNLTGPIP 384
           P   + +  L   ++S N L+G IP
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  153 bits (387), Expect = 1e-39
 Identities = 126/395 (31%), Positives = 182/395 (46%), Gaps = 49/395 (12%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           S  +F  P       +++ ++LS+N+L G IP  +   S  +  YLNLS N+ TG     
Sbjct: 86  SSAIFRLP-------YIQTINLSNNQLSGPIPDDIFTTS-SSLRYLNLSNNNFTGSIPRG 137

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPP---TKTRHYLVSKNNLTGEIPSWICNLSSLYIL 118
           S+        TLDLS+N L G IP      +  +   +  N L G+IP+ + NL+SL  L
Sbjct: 138 SI----PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193

Query: 119 DLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNN 178
            L+ N L G++PR LG          +L  I + +N L G IP  +     L  +DL  N
Sbjct: 194 TLASNQLVGQIPRELGQMK-------SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 179 QIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY 238
            +    P+ LG L  L  L L  N   G I          KL  +DLS+NS +G +P   
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPELV 304

Query: 239 FQCWNAMKFVNASQLRYMRNF-LSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE---KIP 294
            Q               ++N  +   FS +F G  P    SL      Q+ S +   +IP
Sbjct: 305 IQ---------------LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 295 YIL------TAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL 348
             L      T + LS+N   GEIP  + +   L  L L +N+LEG IP   G    L  +
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409

Query: 349 DLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
            L +N FSG++P + T L  + F ++S+NNL G I
Sbjct: 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  152 bits (385), Expect = 2e-39
 Identities = 112/318 (35%), Positives = 158/318 (49%), Gaps = 44/318 (13%)

Query: 72  TLDLSSNFLQGPIP----APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127
           T++LS+N L GPIP       +  R+  +S NN TG IP    ++ +L  LDLS+N LSG
Sbjct: 97  TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSG 154

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
           E+P  +G+FS       +L ++D+  N+L G+IP SL N   LE + L +NQ++   P  
Sbjct: 155 EIPNDIGSFS-------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207

Query: 188 LGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF 247
           LG +  L  + L  NN  GEI       G   L  +DL  N+ TG +PS           
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIP--YEIGGLTSLNHLDLVYNNLTGPIPSS---------L 256

Query: 248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGF 307
            N   L+Y+  FL   +     G  P   +SL                 L ++ LS N  
Sbjct: 257 GNLKNLQYL--FL---YQNKLSGPIPPSIFSLQK---------------LISLDLSDNSL 296

Query: 308 HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT 367
            GEIP  +  L+ L++L L +NN  G IP     L +L+ L L +N FSG+IP+ L    
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 368 FLEFFNVSHNNLTGPIPE 385
            L   ++S NNLTG IPE
Sbjct: 357 NLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (376), Expect = 3e-38
 Identities = 121/372 (32%), Positives = 175/372 (47%), Gaps = 47/372 (12%)

Query: 18  LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSS 77
           L+ LDLS+N L G IP  +   S  +   L+L  N L G     S+   +S EF L L+S
Sbjct: 142 LETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEF-LTLAS 197

Query: 78  NFLQGPIPAPPTKTRH----YLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCL 133
           N L G IP    + +     YL   NNL+GEIP  I  L+SL  LDL  NNL+G +P  L
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYL-GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 134 GNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE 193
           GN         NL  + +  N L G IP S+ +   L  +DL +N +    P  +  L  
Sbjct: 257 GNLK-------NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Query: 194 LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQL 253
           L+IL L SNNF G+I         P+L+++ L +N F+G +P       N  K  N + L
Sbjct: 310 LEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSGEIPK------NLGKHNNLTVL 361

Query: 254 RYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT 313
               N L+        G  P       + + G           L  +IL SN   GEIP 
Sbjct: 362 DLSTNNLT--------GEIPE-----GLCSSGN----------LFKLILFSNSLEGEIPK 398

Query: 314 SIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFN 373
           S+   + L+ + L +N+  G +PS F  L  +  LD+SNN   G+I  +   +  L+  +
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458

Query: 374 VSHNNLTGPIPE 385
           ++ N   G +P+
Sbjct: 459 LARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  122 bits (308), Expect = 1e-29
 Identities = 95/293 (32%), Positives = 133/293 (45%), Gaps = 67/293 (22%)

Query: 96  VSKNNLTGEIPSWICNLS-SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN 154
           +S N L+G IP  I   S SL  L+LS+NN +G +PR  G+         NL  +D+S+N
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP-------NLETLDLSNN 150

Query: 155 LLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKME 214
           +L G IP  + + + L+++DLG N ++   P  L  L+ L+ L L SN   G+I     E
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR---E 207

Query: 215 CGFPK-LRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFP 273
            G  K L+ + L  N+ +G +P +                                    
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEI----------------------------------- 232

Query: 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG 333
                      G + S       L  + L  N   G IP+S+ NLK LQ L L  N L G
Sbjct: 233 -----------GGLTS-------LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Query: 334 HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
            IP     L KL SLDLS+N  SG+IP+ +  L  LE  ++  NN TG IP A
Sbjct: 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (273), Expect = 4e-25
 Identities = 84/277 (30%), Positives = 119/277 (42%), Gaps = 43/277 (15%)

Query: 111 NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-ANCAV 169
           N S +  +DLS  N+SG++       S        +  I++S+N L G IP  +    + 
Sbjct: 67  NSSRVVSIDLSGKNISGKI-------SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS 119

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG-FPKLRIVDLSNN 228
           L  ++L NN    + P   G++  L+ L L +N   GEI     + G F  L+++DL  N
Sbjct: 120 LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN---DIGSFSSLKVLDLGGN 174

Query: 229 SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQML 288
              G +P             N + L ++     +  S    G  P           GQM 
Sbjct: 175 VLVGKIP---------NSLTNLTSLEFL-----TLASNQLVGQIPR--------ELGQMK 212

Query: 289 SYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL 348
           S       L  + L  N   GEIP  I  L  L  L L  NNL G IPS  G+L  L+ L
Sbjct: 213 S-------LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265

Query: 349 DLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE 385
            L  N  SG IP  +  L  L   ++S N+L+G IPE
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 92.2 bits (229), Expect = 9e-20
 Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354
           + +  + L + G  G IP  I+ L+ LQ ++L+ N++ G+IP   G +T LE LDLS N 
Sbjct: 418 WFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 355 FSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFD--GNSGLCGKPLFKEC 412
           F+G IP+ L  LT L   N++ N+L+G +P A        +SF+   N+GLCG P  + C
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 26/134 (19%)

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSK---NN--LTGEIPSWICNLSSL 115
           P   PWS  +   D              +    + +     +N  L G IP+ I  L  L
Sbjct: 399 PQQHPWSGADCQFD--------------STKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444

Query: 116 YILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL 175
             ++LS N++ G +P  LG+ +       +L ++D+S+N   G IP+SL     L I++L
Sbjct: 445 QSINLSGNSIRGNIPPSLGSIT-------SLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 176 GNNQIIDTFPAWLG 189
             N +    PA LG
Sbjct: 498 NGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 58/140 (41%)

Query: 8   FPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWS 67
            PN + + +HL++++LS N + GNIP     PS+ + + L +                  
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIP-----PSLGSITSLEV------------------ 470

Query: 68  SGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127
                LDLS N   G IP                       +  L+SL IL+L+ N+LSG
Sbjct: 471 -----LDLSYNSFNGSIPES---------------------LGQLTSLRILNLNGNSLSG 504

Query: 128 ELPRCLG---------NFSD 138
            +P  LG         NF+D
Sbjct: 505 RVPAALGGRLLHRASFNFTD 524

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGN 177
           L L +  L G +P       +      +L  I++S N ++G IP SL +   LE++DL  
Sbjct: 423 LGLDNQGLRGFIP-------NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475

Query: 178 NQIIDTFPAWLGTLSELDILVLQSNNFHGEI 208
           N    + P  LG L+ L IL L  N+  G +
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 320 GLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379
            L+ L L+NN L       F  L  L+ LDLS N  +   P+  +GL  L   ++S NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 22/57 (38%), Positives = 28/57 (49%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN 353
           L ++ LS+N        +   L  L+VL L+ NNL    P  F  L  L SLDLS N
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 156 LQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC 215
           L+G IP  ++    L+ I+L  N I    P  LG+++ L++L L  N+F+G I E   + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ- 488

Query: 216 GFPKLRIVDLSNNSFTGNLPS 236
               LRI++L+ NS +G +P+
Sbjct: 489 -LTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 40/208 (19%)

Query: 21  LDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80
           LDL+ N+L  NI + L   ++ +    N +   +      P +    S    LDLS N +
Sbjct: 98  LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIP-----PLIGLLKSNLKELDLSDNKI 152

Query: 81  QGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTF 140
           +                       +PS + NL +L  LDLS N+LS        +     
Sbjct: 153 E----------------------SLPSPLRNLPNLKNLDLSFNDLS--------DLPKLL 182

Query: 141 MNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQ 200
            N SNL  +D+S N +   +P  +   + LE +DL NN II+   + L  L  L  L L 
Sbjct: 183 SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELS 240

Query: 201 SNNFHGEIKEHKMECGFPKLRIVDLSNN 228
           +N         +       L  +DLSNN
Sbjct: 241 NNKL---EDLPESIGNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII 173
           +L  LDLS+N L+  +P         F    NL ++D+S N L    P++ +    L  +
Sbjct: 1   NLKSLDLSNNRLT-VIPD------GAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSL 53

Query: 174 DLGNNQI 180
           DL  N +
Sbjct: 54  DLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
           NL  +D+S+N L      +      L+++DL  N +    P     L  L  L L  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	485
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
PLN03150	623	hypothetical protein; Provisional	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.34
PLN03150	623	hypothetical protein; Provisional	99.34
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.62
KOG4341	483	consensus F-box protein containing LRR [General fu	95.44
KOG4341	483	consensus F-box protein containing LRR [General fu	95.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.46
KOG4308	478	consensus LRR-containing protein [Function unknown	92.95
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.13
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	90.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.9
smart00370	26	LRR Leucine-rich repeats, outliers.	90.9
smart00370	26	LRR Leucine-rich repeats, outliers.	90.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.34
KOG4308	478	consensus LRR-containing protein [Function unknown	89.78
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.65
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.51
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.21
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.12
KOG1947	482	consensus Leucine rich repeat proteins, some prote	81.08
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.92

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.6e-45  Score=396.78  Aligned_cols=384  Identities=32%  Similarity=0.464  Sum_probs=268.2

Q ss_pred             CCCC-CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            2 SCNL-FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         2 ~n~l-~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      +|.+ +.+|..++++++|++|+|++|.+.+.+|..++  .+++|++|++++|.+++..|. .+.++..+ ++|++++|.+
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L-~~L~L~~n~l  272 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNNLTGPIPS-SLGNLKNL-QYLFLYQNKL  272 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCceeccccCh-hHhCCCCC-CEEECcCCee
Confidence            5666 67788888888888888888888777887777  778888888888877766554 34444443 7777777777


Q ss_pred             cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564           81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ  157 (485)
Q Consensus        81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~  157 (485)
                      ++..|..   +++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..++.       +++|+.|++++|.++
T Consensus       273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------l~~L~~L~L~~n~l~  345 (968)
T PLN00113        273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-------LPRLQVLQLWSNKFS  345 (968)
T ss_pred             eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-------CCCCCEEECcCCCCc
Confidence            7666654   667777777777777777777777777777777777777666654433       245555555555555


Q ss_pred             ccCCccccCCCCCcEEEccCCcccCCcCh------------------------hhhCCCCCCEEEeeccccccccCCccc
Q 039564          158 GRIPKSLANCAVLEIIDLGNNQIIDTFPA------------------------WLGTLSELDILVLQSNNFHGEIKEHKM  213 (485)
Q Consensus       158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~  213 (485)
                      +.+|..+..+++|+.|++++|.+.+..|.                        .+..+++|+.|++++|.+.+.+|..+ 
T Consensus       346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-  424 (968)
T PLN00113        346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-  424 (968)
T ss_pred             CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH-
Confidence            55555555555555555555555444444                        44445555555555555544444444 


Q ss_pred             cCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc--
Q 039564          214 ECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE--  291 (485)
Q Consensus       214 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--  291 (485)
                       ..+++|+.|++++|.+.+.++.. +..+++|+.+++.++.........+        -...+..+++..+......+  
T Consensus       425 -~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~--------~~~~L~~L~ls~n~l~~~~~~~  494 (968)
T PLN00113        425 -TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSF--------GSKRLENLDLSRNQFSGAVPRK  494 (968)
T ss_pred             -hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCccc--------ccccceEEECcCCccCCccChh
Confidence             44555555555555555433322 3344555555554443322111100        01245667777766654433  


Q ss_pred             -cccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCC
Q 039564          292 -KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLE  370 (485)
Q Consensus       292 -~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  370 (485)
                       ..++.|+.|++++|.+.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+
T Consensus       495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  574 (968)
T PLN00113        495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV  574 (968)
T ss_pred             hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence             2467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          371 FFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP  407 (485)
Q Consensus       371 ~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  407 (485)
                      .+++++|++.+.+|....+..+....+.|||.+|+.+
T Consensus       575 ~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             EEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999998888888888999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.7e-42  Score=374.40  Aligned_cols=394  Identities=31%  Similarity=0.414  Sum_probs=277.7

Q ss_pred             CCCC-CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            2 SCNL-FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         2 ~n~l-~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      +|.+ +.+|..++++++|++|+|++|.+.+.+|..+.  .+++|++|++++|.+++..|. .+..+..+ ++|++++|.+
T Consensus       149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L-~~L~L~~n~l  224 (968)
T PLN00113        149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT--NLTSLEFLTLASNQLVGQIPR-ELGQMKSL-KWIYLGYNNL  224 (968)
T ss_pred             CCcccccCChHHhcCCCCCEEECccCcccccCChhhh--hCcCCCeeeccCCCCcCcCCh-HHcCcCCc-cEEECcCCcc
Confidence            5666 67788888888888888888888878888887  788888888888888776654 44444444 8888888888


Q ss_pred             cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564           81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ  157 (485)
Q Consensus        81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~  157 (485)
                      ++..|..   +++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+|..++.       +++|++|++++|.+.
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-------l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-------LQKLISLDLSDNSLS  297 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-------ccCcCEEECcCCeec
Confidence            7777654   778888888888888778888888888888888888887777755543       356666666666666


Q ss_pred             ccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564          158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK  237 (485)
Q Consensus       158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  237 (485)
                      +.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+  ..+++|+.|++++|.+.+.+|..
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChh
Confidence            6666666666666666666666666666666666666666666666665555544  44555555555555555444432


Q ss_pred             -----------------------hhcccccceeccccchhhhhccccccccc----------c-cccCc------Ccccc
Q 039564          238 -----------------------YFQCWNAMKFVNASQLRYMRNFLSSYFSF----------D-FYGYF------PHYYY  277 (485)
Q Consensus       238 -----------------------~~~~l~~L~~l~~~~~~~~~~~~~~~~~~----------~-~~~~~------~~~~~  277 (485)
                                             .+..+++|+.+++.++.........+...          + ..+..      ...+.
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  455 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ  455 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence                                   13334444444444332221111110000          0 00011      11344


Q ss_pred             eEEeeecCccccccc--ccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcC
Q 039564          278 SLTMSNKGQMLSYEK--IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWF  355 (485)
Q Consensus       278 ~l~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  355 (485)
                      .+.+..+......+.  ....|+.|++++|++.+..|..+.++++|+.|+|++|++.+.+|..+..+++|++|++++|.+
T Consensus       456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  535 (968)
T PLN00113        456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL  535 (968)
T ss_pred             EEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence            455555544332222  245789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564          356 SGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       356 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      ++.+|..|..+++|+.|++++|++++.+|.. ..+..+..+++.+|+..+..|.
T Consensus       536 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            9999999999999999999999999999875 4567788889999988775553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-38  Score=296.54  Aligned_cols=354  Identities=21%  Similarity=0.261  Sum_probs=215.9

Q ss_pred             ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-
Q 039564            9 PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-   87 (485)
Q Consensus         9 p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-   87 (485)
                      +..|.++++|+.++|.+|.++ .+|..-+  ...+|+.|+|.+|.|+.+...  .......|++||||.|.|+.+.... 
T Consensus        95 ~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~--~sghl~~L~L~~N~I~sv~se--~L~~l~alrslDLSrN~is~i~~~sf  169 (873)
T KOG4194|consen   95 FEFFYNLPNLQEVNLNKNELT-RIPRFGH--ESGHLEKLDLRHNLISSVTSE--ELSALPALRSLDLSRNLISEIPKPSF  169 (873)
T ss_pred             HHHHhcCCcceeeeeccchhh-hcccccc--cccceeEEeeeccccccccHH--HHHhHhhhhhhhhhhchhhcccCCCC
Confidence            334555555555555555555 5554333  344455555555555544332  2222333355555555555332222 


Q ss_pred             --CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcccc
Q 039564           88 --PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA  165 (485)
Q Consensus        88 --~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  165 (485)
                        -.++++|+|++|.|+..-...|.++.+|.+|.|+.|+++ .+|.      ..|+.++.|+.|+|..|+|...---.|.
T Consensus       170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~------r~Fk~L~~L~~LdLnrN~irive~ltFq  242 (873)
T KOG4194|consen  170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQ------RSFKRLPKLESLDLNRNRIRIVEGLTFQ  242 (873)
T ss_pred             CCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCH------HHhhhcchhhhhhccccceeeehhhhhc
Confidence              234555555555555555555555555555555555555 4443      2344445555555555555532234455


Q ss_pred             CCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccc
Q 039564          166 NCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAM  245 (485)
Q Consensus       166 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  245 (485)
                      ++++|+.|.|..|.+.....++|..+.++++|+|..|++...-...+  .++..|+.|++++|.|. .+....+...++|
T Consensus       243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~-rih~d~WsftqkL  319 (873)
T KOG4194|consen  243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKL  319 (873)
T ss_pred             CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc--cccchhhhhccchhhhh-eeecchhhhcccc
Confidence            55555555555555555555555555555555555555553322233  34555555555555555 2222224444455


Q ss_pred             eeccccchhhhhcccccccccccccCcCcccceEEeeecCccccccc---ccccccEEEcCCCcCcccCchhhccCCCCC
Q 039564          246 KFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEK---IPYILTAVILSSNGFHGEIPTSIANLKGLQ  322 (485)
Q Consensus       246 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  322 (485)
                      +.++++.+                               ......+.   -+..|+.|.|++|.+...-...|..+++|+
T Consensus       320 ~~LdLs~N-------------------------------~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  320 KELDLSSN-------------------------------RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH  368 (873)
T ss_pred             eeEecccc-------------------------------ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence            55444432                               22211111   155689999999999877777889999999


Q ss_pred             EEeCcCceecccCCc---cccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCC
Q 039564          323 VLSLANNNLEGHIPS---CFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDG  399 (485)
Q Consensus       323 ~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~  399 (485)
                      +|||++|.+++.+.+   .|.++++|+.|++.+|++..+--..|..++.|++|||.+|.+....|.......+..+.+..
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS  448 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS  448 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence            999999999877654   47889999999999999996666789999999999999999988777665444677777888


Q ss_pred             CCCCCCCCC
Q 039564          400 NSGLCGKPL  408 (485)
Q Consensus       400 n~~lc~~~~  408 (485)
                      -.++|+|.+
T Consensus       449 ssflCDCql  457 (873)
T KOG4194|consen  449 SSFLCDCQL  457 (873)
T ss_pred             cceEEeccH
Confidence            889999977

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-35  Score=277.03  Aligned_cols=344  Identities=23%  Similarity=0.229  Sum_probs=261.6

Q ss_pred             CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCc
Q 039564           16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTR   92 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~   92 (485)
                      +.-+.||+|+|++...-+..|-  .+++|+.+++.+|.++.+   |.+......++.|+|.+|.|+......   ++.|+
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~--nl~nLq~v~l~~N~Lt~I---P~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFY--NLPNLQEVNLNKNELTRI---PRFGHESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             cceeeeeccccccccCcHHHHh--cCCcceeeeeccchhhhc---ccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            3456688888888877666676  788888888888888865   345666666688888888887655443   77888


Q ss_pred             EEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcE
Q 039564           93 HYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI  172 (485)
Q Consensus        93 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  172 (485)
                      .|||+.|.|+..--..|..-.++++|+|++|+|+...-       +.|..+.+|.+|.|+.|+++...+..|+++++|+.
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-------~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-------GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES  225 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeecccccccccc-------ccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence            88888888875444566666788888888888873322       45666678888888888888666677888888888


Q ss_pred             EEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccc
Q 039564          173 IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQ  252 (485)
Q Consensus       173 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~  252 (485)
                      |+|..|+|...--.+|.++++|+.|.+..|.+...-...|  ..+.+++.|+|..|+++ .+...+.-.+++|+.+++++
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~  302 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSY  302 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhh-hhhcccccccchhhhhccch
Confidence            8888888854445678888888888888888874433344  67788888888888887 66666677778888877776


Q ss_pred             hhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceec
Q 039564          253 LRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE  332 (485)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  332 (485)
                      +..-+.....                            -.....|++|+|+.|+++...+..|..+..|++|+|++|.+.
T Consensus       303 NaI~rih~d~----------------------------WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  303 NAIQRIHIDS----------------------------WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             hhhheeecch----------------------------hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence            5433321111                            123566999999999999888888999999999999999999


Q ss_pred             ccCCccccCCCCCCEEECCCCcCcccCcc---cccCCCCCCEEeccCCcccccCCCC--CCCCCCCCCCCCCCCCC
Q 039564          333 GHIPSCFGDLTKLESLDLSNNWFSGQIPQ---QLTGLTFLEFFNVSHNNLTGPIPEA--NQFPTFDSSSFDGNSGL  403 (485)
Q Consensus       333 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~l  403 (485)
                      ..-...|..+++|+.|||++|.++..+.+   .|..+++|+.|++.+|++. .||..  ..++.++.+++.+|+--
T Consensus       355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcce
Confidence            77778899999999999999999876654   5778999999999999997 44432  46777888888888743

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=4.2e-32  Score=258.29  Aligned_cols=356  Identities=25%  Similarity=0.340  Sum_probs=282.2

Q ss_pred             CCCCC--CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCC
Q 039564            1 RSCNL--FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSN   78 (485)
Q Consensus         1 ~~n~l--~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n   78 (485)
                      ++|.+  +.+|.....+++++-|-|...++. .+|+.++  .+.+|++|.+++|++..+-..  +..+..+ +.+++..|
T Consensus        15 sgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~--~lqkLEHLs~~HN~L~~vhGE--Ls~Lp~L-Rsv~~R~N   88 (1255)
T KOG0444|consen   15 SGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS--RLQKLEHLSMAHNQLISVHGE--LSDLPRL-RSVIVRDN   88 (1255)
T ss_pred             cCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH--HHhhhhhhhhhhhhhHhhhhh--hccchhh-HHHhhhcc
Confidence            46777  688899999999999999888888 8898888  889999999999988765332  4445555 88999988


Q ss_pred             ccc--ccCCCC--CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC
Q 039564           79 FLQ--GPIPAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN  154 (485)
Q Consensus        79 ~l~--~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n  154 (485)
                      .+.  |++++.  +..|+.|+|++|++. ..|..+..-+++-+|+|++|+|. +||..+      |.++..|-.||||+|
T Consensus        89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~l------finLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSL------FINLTDLLFLDLSNN  160 (1255)
T ss_pred             ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchH------HHhhHhHhhhccccc
Confidence            876  333333  888999999999998 78888888888999999999998 888743      566788889999999


Q ss_pred             cccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc-cccCCccccCCCCCccEEEccCccCCcc
Q 039564          155 LLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH-GEIKEHKMECGFPKLRIVDLSNNSFTGN  233 (485)
Q Consensus       155 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~  233 (485)
                      ++. .+|..+..+..|++|+|++|.+...--.-+..|++|++|.+++.+-+ ..+|..+  ..+.+|+.+|+|.|.+. .
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~Lp-~  236 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNLP-I  236 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCCC-c
Confidence            988 77888888999999999999885443344556778888888877643 3467766  67889999999999987 7


Q ss_pred             CChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCch
Q 039564          234 LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT  313 (485)
Q Consensus       234 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  313 (485)
                      +|+. .-.+.+|+.++++.++.-..                     .+        .......|++|++|.|+++ .+|+
T Consensus       237 vPec-ly~l~~LrrLNLS~N~iteL---------------------~~--------~~~~W~~lEtLNlSrNQLt-~LP~  285 (1255)
T KOG0444|consen  237 VPEC-LYKLRNLRRLNLSGNKITEL---------------------NM--------TEGEWENLETLNLSRNQLT-VLPD  285 (1255)
T ss_pred             chHH-HhhhhhhheeccCcCceeee---------------------ec--------cHHHHhhhhhhccccchhc-cchH
Confidence            7754 55677777777665432211                     00        0011234899999999999 8999


Q ss_pred             hhccCCCCCEEeCcCceec-ccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCC
Q 039564          314 SIANLKGLQVLSLANNNLE-GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPT  391 (485)
Q Consensus       314 ~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~  391 (485)
                      .+..++.|+.|.+.+|+++ .-+|..++.+..|+++..++|.+. ..|..++.+..|+.|.|+.|++.. .|.. ..++.
T Consensus       286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~  363 (1255)
T KOG0444|consen  286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPD  363 (1255)
T ss_pred             HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCC
Confidence            9999999999999999874 358889999999999999999998 899999999999999999999974 4554 45677


Q ss_pred             CCCCCCCCCCCCCCCC
Q 039564          392 FDSSSFDGNSGLCGKP  407 (485)
Q Consensus       392 l~~~~~~~n~~lc~~~  407 (485)
                      +..+++..||.+.-.|
T Consensus       364 l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  364 LKVLDLRENPNLVMPP  379 (1255)
T ss_pred             cceeeccCCcCccCCC
Confidence            8889999999887554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=3.1e-32  Score=246.58  Aligned_cols=377  Identities=24%  Similarity=0.305  Sum_probs=196.9

Q ss_pred             CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564            2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ   81 (485)
Q Consensus         2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~   81 (485)
                      +|++.++|++++.+..++.|+.++|+++ .+|+.+.  ...+|+.|++++|.+....+  +++.+..+ ..++..+|+++
T Consensus        77 ~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~--s~~~l~~l~~s~n~~~el~~--~i~~~~~l-~dl~~~~N~i~  150 (565)
T KOG0472|consen   77 DNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIG--SLISLVKLDCSSNELKELPD--SIGRLLDL-EDLDATNNQIS  150 (565)
T ss_pred             cchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHh--hhhhhhhhhccccceeecCc--hHHHHhhh-hhhhccccccc
Confidence            4556666666666666666666666666 5666665  56666666666666665443  24554444 55555555555


Q ss_pred             ccCCCC-------------------------CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccC
Q 039564           82 GPIPAP-------------------------PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNF  136 (485)
Q Consensus        82 ~~~~~~-------------------------~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  136 (485)
                      ..+++.                         ++.|++|+...|.+. .+|..++.+.+|..|++..|.+. .+|      
T Consensus       151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP------  222 (565)
T KOG0472|consen  151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP------  222 (565)
T ss_pred             cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC------
Confidence            433332                         444455555554444 44555555555555555555554 344      


Q ss_pred             cccccCCCCccEEEccCCcccccCCcc-ccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccC
Q 039564          137 SDTFMNGSNLGIIDMSHNLLQGRIPKS-LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC  215 (485)
Q Consensus       137 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  215 (485)
                        .|.++..|++|+++.|.|. .+|.. ..+++++.+|||.+|++ ...|+.+.-+.+|.+|++++|.++ .+|..+  +
T Consensus       223 --ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is-~Lp~sL--g  295 (565)
T KOG0472|consen  223 --EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDIS-SLPYSL--G  295 (565)
T ss_pred             --CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCccc-cCCccc--c
Confidence              2333445555555555555 33332 23555555555555555 334444555555555555555554 344444  4


Q ss_pred             CCCCccEEEccCccCCccCChhhhcc-----cccc------------------------------------eeccccchh
Q 039564          216 GFPKLRIVDLSNNSFTGNLPSKYFQC-----WNAM------------------------------------KFVNASQLR  254 (485)
Q Consensus       216 ~l~~L~~L~l~~n~l~~~~~~~~~~~-----l~~L------------------------------------~~l~~~~~~  254 (485)
                      .+ +|+.|.+.+|++. .+...+...     ++.|                                    +.++++..+
T Consensus       296 nl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q  373 (565)
T KOG0472|consen  296 NL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ  373 (565)
T ss_pred             cc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence            44 4555555555443 111111100     0000                                    000000000


Q ss_pred             h----------hh--cccccccccccccCcCccc-------ceEEeeecC--cccccccccccccEEEcCCCcCcccCch
Q 039564          255 Y----------MR--NFLSSYFSFDFYGYFPHYY-------YSLTMSNKG--QMLSYEKIPYILTAVILSSNGFHGEIPT  313 (485)
Q Consensus       255 ~----------~~--~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  313 (485)
                      .          ..  .+..-..+.+.+..+|..+       ..+..+++.  ....+.+..+.+..|+|++|-+. .+|.
T Consensus       374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~  452 (565)
T KOG0472|consen  374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE  452 (565)
T ss_pred             cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence            0          00  0000000011111122111       011111111  11122233556777888877776 6777


Q ss_pred             hhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCC
Q 039564          314 SIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFD  393 (485)
Q Consensus       314 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~  393 (485)
                      .++.+..|+.||+|.|+|. .+|.++-.+..++.+-.++|++....|+.+.++..|..||+.+|.+....|.......+.
T Consensus       453 e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~  531 (565)
T KOG0472|consen  453 EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLR  531 (565)
T ss_pred             hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccccee
Confidence            7777777888888888776 667666666666666666677775666667778888888888888876666666777778


Q ss_pred             CCCCCCCCCC
Q 039564          394 SSSFDGNSGL  403 (485)
Q Consensus       394 ~~~~~~n~~l  403 (485)
                      .+.+.|||+.
T Consensus       532 hLeL~gNpfr  541 (565)
T KOG0472|consen  532 HLELDGNPFR  541 (565)
T ss_pred             EEEecCCccC
Confidence            8888888875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=3.3e-30  Score=245.43  Aligned_cols=332  Identities=26%  Similarity=0.329  Sum_probs=235.6

Q ss_pred             CCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccccc
Q 039564            4 NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGP   83 (485)
Q Consensus         4 ~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~   83 (485)
                      +|.++|+.++.|.+|++|.+++|++. .+-..+.  .+++|+.+++.+|++....-.+++|++..+ .+||||+|+++. 
T Consensus        43 ~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs--~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL-t~lDLShNqL~E-  117 (1255)
T KOG0444|consen   43 KLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELS--DLPRLRSVIVRDNNLKNSGIPTDIFRLKDL-TILDLSHNQLRE-  117 (1255)
T ss_pred             hhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhc--cchhhHHHhhhccccccCCCCchhcccccc-eeeecchhhhhh-
Confidence            45788999999999999999999887 5555666  789999999999988532222368888887 999999999884 


Q ss_pred             CCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564           84 IPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI  160 (485)
Q Consensus        84 ~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~  160 (485)
                      .|..   -.++-.|+|++|+|..+.-..|.+++.|-.|||++|++. .+|..+..+       ..|++|+|++|.+...-
T Consensus       118 vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL-------~~LqtL~Ls~NPL~hfQ  189 (1255)
T KOG0444|consen  118 VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRL-------SMLQTLKLSNNPLNHFQ  189 (1255)
T ss_pred             cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHH-------hhhhhhhcCCChhhHHH
Confidence            4443   678888999999998544456778899999999999988 788766554       67888888888776443


Q ss_pred             CccccCCCCCcEEEccCCccc-CCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhh
Q 039564          161 PKSLANCAVLEIIDLGNNQII-DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYF  239 (485)
Q Consensus       161 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  239 (485)
                      -..+..+++|++|.+++.+=+ .-+|..+..+.+|..++++.|.+. .+|+-.  ..+++|+.|+||+|.++ .+... .
T Consensus       190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl--y~l~~LrrLNLS~N~it-eL~~~-~  264 (1255)
T KOG0444|consen  190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL--YKLRNLRRLNLSGNKIT-ELNMT-E  264 (1255)
T ss_pred             HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH--hhhhhhheeccCcCcee-eeecc-H
Confidence            444555566666666654322 335555666666666666666665 555554  45666666666666665 33211 3


Q ss_pred             cccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcc-cCchhhccC
Q 039564          240 QCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG-EIPTSIANL  318 (485)
Q Consensus       240 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l  318 (485)
                      ..+..++.++++.++...              +|..               ..-++.|+.|.+.+|+++- -+|..++.+
T Consensus       265 ~~W~~lEtLNlSrNQLt~--------------LP~a---------------vcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLTV--------------LPDA---------------VCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             HHHhhhhhhccccchhcc--------------chHH---------------HhhhHHHHHHHhccCcccccCCccchhhh
Confidence            344445555444332211              0000               0113457778888888652 378889999


Q ss_pred             CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCC
Q 039564          319 KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP  384 (485)
Q Consensus       319 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  384 (485)
                      .+|+.+..++|.+. .+|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+=....|
T Consensus       316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            99999999999887 88999999999999999999998 788888889999999999987554333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=6e-30  Score=231.85  Aligned_cols=326  Identities=25%  Similarity=0.316  Sum_probs=205.3

Q ss_pred             CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564            2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ   81 (485)
Q Consensus         2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~   81 (485)
                      +|++.++|+..-+++.|++||...|.+. .+|..++  .+.+|+.|+|.+|++... |   -|..+..|.+|.++.|.|.
T Consensus       169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg--~l~~L~~LyL~~Nki~~l-P---ef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  169 GNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELG--GLESLELLYLRRNKIRFL-P---EFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             ccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhc--chhhhHHHHhhhcccccC-C---CCCccHHHHHHHhcccHHH
Confidence            3444444444444555555555555554 5555555  566666666666666543 1   1444444466666666665


Q ss_pred             ccCCC---CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc
Q 039564           82 GPIPA---PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG  158 (485)
Q Consensus        82 ~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~  158 (485)
                      .....   .+..+..||+++|+++ ..|+.++-+++|+.||+++|.++ .+|..+|++        .|+.|-+.+|.+..
T Consensus       242 ~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--------hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  242 MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL--------HLKFLALEGNPLRT  311 (565)
T ss_pred             hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc--------eeeehhhcCCchHH
Confidence            33222   2778888999999998 78988999999999999999888 778777764        45566666655421


Q ss_pred             -------------------------------------c-CCc---cccCCCCCcEEEccCCcccCCcChhhhCCC--CCC
Q 039564          159 -------------------------------------R-IPK---SLANCAVLEIIDLGNNQIIDTFPAWLGTLS--ELD  195 (485)
Q Consensus       159 -------------------------------------~-~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~  195 (485)
                                                           . .+.   ....+.+.+.|++++-+++..+...|..-.  -..
T Consensus       312 iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt  391 (565)
T KOG0472|consen  312 IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVT  391 (565)
T ss_pred             HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceE
Confidence                                                 0 000   011233566677776666544333333221  255


Q ss_pred             EEEeeccccccccCCccccCCCCCc-cEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCc
Q 039564          196 ILVLQSNNFHGEIKEHKMECGFPKL-RIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPH  274 (485)
Q Consensus       196 ~L~L~~n~l~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (485)
                      ..+++.|++. ++|...  ..+..+ +.+.+++|.+. .+| .....++.+..++++++-.              ..+|.
T Consensus       392 ~VnfskNqL~-elPk~L--~~lkelvT~l~lsnn~is-fv~-~~l~~l~kLt~L~L~NN~L--------------n~LP~  452 (565)
T KOG0472|consen  392 SVNFSKNQLC-ELPKRL--VELKELVTDLVLSNNKIS-FVP-LELSQLQKLTFLDLSNNLL--------------NDLPE  452 (565)
T ss_pred             EEecccchHh-hhhhhh--HHHHHHHHHHHhhcCccc-cch-HHHHhhhcceeeecccchh--------------hhcch
Confidence            5666777665 555443  222222 22334444432 333 2344455555544443211              01111


Q ss_pred             ccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCc
Q 039564          275 YYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW  354 (485)
Q Consensus       275 ~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  354 (485)
                      ...               ..-.|+.|+++.|+|. .+|..+..+..++.+-.++|++....|..+..|.+|..|||.+|.
T Consensus       453 e~~---------------~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd  516 (565)
T KOG0472|consen  453 EMG---------------SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND  516 (565)
T ss_pred             hhh---------------hhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence            111               1223899999999998 899988888889988888899997777779999999999999999


Q ss_pred             CcccCcccccCCCCCCEEeccCCccc
Q 039564          355 FSGQIPQQLTGLTFLEFFNVSHNNLT  380 (485)
Q Consensus       355 l~~~~p~~~~~l~~L~~L~l~~N~l~  380 (485)
                      +. .+|+.++++++|++|++++|+|.
T Consensus       517 lq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  517 LQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hh-hCChhhccccceeEEEecCCccC
Confidence            99 88999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=7.3e-28  Score=239.28  Aligned_cols=243  Identities=26%  Similarity=0.374  Sum_probs=170.4

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV  223 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  223 (485)
                      .+|+.++++.|.++ .+|+++..+.+|+.++..+|.+ ..+|..+..+++|+.|.+..|.+. .+|...  ..+..|++|
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~l--e~~~sL~tL  315 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFL--EGLKSLRTL  315 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcc--cccceeeee
Confidence            46777777777777 4557777777777777777777 445666667777777777777776 555555  567889999


Q ss_pred             EccCccCCccCChhhhccccc-ceeccccchhhhhcccccccccccccCc-CcccceEEeeecCcccc---ccccccccc
Q 039564          224 DLSNNSFTGNLPSKYFQCWNA-MKFVNASQLRYMRNFLSSYFSFDFYGYF-PHYYYSLTMSNKGQMLS---YEKIPYILT  298 (485)
Q Consensus       224 ~l~~n~l~~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~---~~~~~~~L~  298 (485)
                      ++..|.+. ..|..++..... +..++.+.++.-..        -+.+.. ...++.+.+.++.+...   .......|+
T Consensus       316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~l--------p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK  386 (1081)
T KOG0618|consen  316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTL--------PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK  386 (1081)
T ss_pred             eehhcccc-ccchHHHhhhhHHHHHHhhhhcccccc--------ccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence            99999887 777765543332 44443332111000        000000 01223333333333322   122366799


Q ss_pred             EEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCc
Q 039564          299 AVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNN  378 (485)
Q Consensus       299 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~  378 (485)
                      .|+|++|++.......+.++..|++|+||+|+++ .+|+.+..+..|++|...+|++. ..| .+..++.|+.+|++.|+
T Consensus       387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             eeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence            9999999998444455888999999999999999 78899999999999999999999 777 78999999999999999


Q ss_pred             cccc-CCCCCCCCCCCCCCCCCCCCC
Q 039564          379 LTGP-IPEANQFPTFDSSSFDGNSGL  403 (485)
Q Consensus       379 l~~~-~p~~~~~~~l~~~~~~~n~~l  403 (485)
                      ++.. +|.....+.++.+++.||+++
T Consensus       464 L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  464 LSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhhhhhhhhCCCcccceeeccCCccc
Confidence            9863 455555689999999999974

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=1.1e-23  Score=215.74  Aligned_cols=263  Identities=25%  Similarity=0.304  Sum_probs=186.3

Q ss_pred             CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEE
Q 039564           16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL   95 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~   95 (485)
                      .+-..|+++++.++ .+|..+.    ++|+.|++++|+++.+..      ....|++|++++|+|+.. |..+++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSL-PVLPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcc-cCcccccceee
Confidence            45667888888888 7787665    378888999888886532      234458888888888854 55577888888


Q ss_pred             ccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEc
Q 039564           96 VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL  175 (485)
Q Consensus        96 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  175 (485)
                      +++|.+. .+|..   ...|+.|++++|+++ .+|..          .++|+.|++++|.+++ +|..   ..+|+.|++
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~----------p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~L  329 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL----------PPGLQELSVSDNQLAS-LPAL---PSELCKLWA  329 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc----------ccccceeECCCCcccc-CCCC---ccccccccc
Confidence            8888887 45543   256778888888887 56642          2678888888888884 4442   235777888


Q ss_pred             cCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhh
Q 039564          176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY  255 (485)
Q Consensus       176 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~  255 (485)
                      ++|.++. +|.   ...+|+.|++++|++. .+|..     .++|+.|++++|.+. .+|..                  
T Consensus       330 s~N~L~~-LP~---lp~~Lq~LdLS~N~Ls-~LP~l-----p~~L~~L~Ls~N~L~-~LP~l------------------  380 (788)
T PRK15387        330 YNNQLTS-LPT---LPSGLQELSVSDNQLA-SLPTL-----PSELYKLWAYNNRLT-SLPAL------------------  380 (788)
T ss_pred             ccCcccc-ccc---cccccceEecCCCccC-CCCCC-----Ccccceehhhccccc-cCccc------------------
Confidence            8888864 332   1247888888888887 45543     246777888888877 45421                  


Q ss_pred             hhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccC
Q 039564          256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI  335 (485)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  335 (485)
                                                            +..|+.|++++|.++ .+|..   .++|+.|++++|+++ .+
T Consensus       381 --------------------------------------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sI  417 (788)
T PRK15387        381 --------------------------------------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SL  417 (788)
T ss_pred             --------------------------------------ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CC
Confidence                                                  123777888888887 35543   357888888888887 45


Q ss_pred             CccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCC
Q 039564          336 PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE  385 (485)
Q Consensus       336 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  385 (485)
                      |...   .+|+.|++++|+++ .+|..+..+++|+.+++++|++++.++.
T Consensus       418 P~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        418 PMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             Ccch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            6533   46778888888888 6788888888888888888888876543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=8.4e-24  Score=216.57  Aligned_cols=259  Identities=27%  Similarity=0.362  Sum_probs=206.0

Q ss_pred             CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      +.|+|+++|+.+.  ++|+.|++++|.++ .+|.     ..++|++|++++|+++.+..      ....|+.|++++|.+
T Consensus       209 s~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~-----lp~~Lk~LdLs~N~LtsLP~------lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        209 GESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPL  274 (788)
T ss_pred             CCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC-----CCCCCcEEEecCCccCcccC------cccccceeeccCCch
Confidence            3578889999886  58999999999999 6775     35799999999999997632      234559999999998


Q ss_pred             cccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564           81 QGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI  160 (485)
Q Consensus        81 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~  160 (485)
                      +. +|..+.+|+.|++++|.++ .+|..   .++|+.|++++|.++ .+|..          ..+|+.|++++|.++ .+
T Consensus       275 ~~-Lp~lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----------p~~L~~L~Ls~N~L~-~L  337 (788)
T PRK15387        275 TH-LPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----------PSELCKLWAYNNQLT-SL  337 (788)
T ss_pred             hh-hhhchhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----------cccccccccccCccc-cc
Confidence            84 4456788999999999998 46653   578999999999998 56642          156889999999998 45


Q ss_pred             CccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564          161 PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ  240 (485)
Q Consensus       161 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  240 (485)
                      |..   ..+|++|++++|+++.. |..   ..+|+.|++++|.+. .+|..     ..+|+.|++++|.+. .+|..   
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~l-----~~~L~~LdLs~N~Lt-~LP~l---  400 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPAL-----PSGLKELIVSGNRLT-SLPVL---  400 (788)
T ss_pred             ccc---ccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCccc-----ccccceEEecCCccc-CCCCc---
Confidence            542   25799999999999764 432   367899999999998 46643     257999999999988 45531   


Q ss_pred             ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCC
Q 039564          241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG  320 (485)
Q Consensus       241 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  320 (485)
                                                                           +..|+.|++++|.++ .+|..   ..+
T Consensus       401 -----------------------------------------------------~s~L~~LdLS~N~Ls-sIP~l---~~~  423 (788)
T PRK15387        401 -----------------------------------------------------PSELKELMVSGNRLT-SLPML---PSG  423 (788)
T ss_pred             -----------------------------------------------------ccCCCEEEccCCcCC-CCCcc---hhh
Confidence                                                                 223889999999998 46653   356


Q ss_pred             CCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccC
Q 039564          321 LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG  365 (485)
Q Consensus       321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  365 (485)
                      |+.|++++|+++ .+|..+..+++|+.|+|++|.+++..+..+..
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            888999999998 78999999999999999999999887776633

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-26  Score=208.88  Aligned_cols=233  Identities=19%  Similarity=0.163  Sum_probs=154.8

Q ss_pred             CCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccC-CcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            2 SCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSK-NSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         2 ~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      .|+|+.||+ +|+.+++|++||||+|.|+...|++|.  ++++|-.|.+-+ |+|+.+..  +.|..+..|+.|.+.-|+
T Consensus        76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k--~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK--GLASLLSLVLYGNNKITDLPK--GAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             cCCcccCChhhccchhhhceecccccchhhcChHhhh--hhHhhhHHHhhcCCchhhhhh--hHhhhHHHHHHHhcChhh
Confidence            355666665 666666666666666666666666666  666655555444 66665432  345444444666666666


Q ss_pred             ccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccc------------ccCCCccccCc-------
Q 039564           80 LQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS------------GELPRCLGNFS-------  137 (485)
Q Consensus        80 l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------------~~~p~~l~~l~-------  137 (485)
                      +.......   ++++..|.+.+|.+...-...|..+..++.+.+..|.+.            ...|..++...       
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl  231 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL  231 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence            66554443   677788888888887544447888888888888887632            11122221111       


Q ss_pred             ------------------------------------ccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCccc
Q 039564          138 ------------------------------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII  181 (485)
Q Consensus       138 ------------------------------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  181 (485)
                                                          ..|+.+++|++|+|++|+++++-+.+|.+...+++|.|..|++.
T Consensus       232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~  311 (498)
T KOG4237|consen  232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE  311 (498)
T ss_pred             HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence                                                56777788888888888888777777888888888888888877


Q ss_pred             CCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564          182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ  240 (485)
Q Consensus       182 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  240 (485)
                      ......|.++..|++|+|.+|+++...|..|  ..+..|.+|++-.|.+.....-.|+.
T Consensus       312 ~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~wl~  368 (498)
T KOG4237|consen  312 FVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFNCNCRLAWLG  368 (498)
T ss_pred             HHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehccCcccCccchHHHH
Confidence            6666777788888888888888876666665  66677788888777776555544443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-24  Score=216.82  Aligned_cols=292  Identities=26%  Similarity=0.339  Sum_probs=201.3

Q ss_pred             CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCC
Q 039564            6 FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP   85 (485)
Q Consensus         6 ~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~   85 (485)
                      +.++.++.++++  .|||++|.+. ..  .+.  .+.+|+.|....|.+....     .....+ +.|+.++|.++...+
T Consensus       170 ~~~~~~i~~l~~--~ldLr~N~~~-~~--dls--~~~~l~~l~c~rn~ls~l~-----~~g~~l-~~L~a~~n~l~~~~~  236 (1081)
T KOG0618|consen  170 GSFLIDIYNLTH--QLDLRYNEME-VL--DLS--NLANLEVLHCERNQLSELE-----ISGPSL-TALYADHNPLTTLDV  236 (1081)
T ss_pred             cchhcchhhhhe--eeecccchhh-hh--hhh--hccchhhhhhhhcccceEE-----ecCcch-heeeeccCcceeecc
Confidence            555555555555  5777777766 21  223  4567777777777766442     223344 888888898886555


Q ss_pred             CC-CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccc
Q 039564           86 AP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL  164 (485)
Q Consensus        86 ~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~  164 (485)
                      .. +.+|+++++++|+++ .+|++++.+.+|+.+++.+|+++ .+|..+...       .+|+.|.+..|.+. .+|...
T Consensus       237 ~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~-------~~L~~l~~~~nel~-yip~~l  306 (1081)
T KOG0618|consen  237 HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRI-------TSLVSLSAAYNELE-YIPPFL  306 (1081)
T ss_pred             ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhh-------hhHHHHHhhhhhhh-hCCCcc
Confidence            55 889999999999999 57799999999999999999996 777555443       67777777777777 556666


Q ss_pred             cCCCCCcEEEccCCcccCCcChhhh-------------------------CCCCCCEEEeeccccccccCCccccCCCCC
Q 039564          165 ANCAVLEIIDLGNNQIIDTFPAWLG-------------------------TLSELDILVLQSNNFHGEIKEHKMECGFPK  219 (485)
Q Consensus       165 ~~l~~L~~L~Ls~n~l~~~~~~~~~-------------------------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  219 (485)
                      ..+++|++|+|..|.+....+..|.                         .++.|+.|++.+|.++....+.+  .++++
T Consensus       307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~h  384 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKH  384 (1081)
T ss_pred             cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccc
Confidence            6677777777777776433222222                         23346666777777766655555  56677


Q ss_pred             ccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccE
Q 039564          220 LRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA  299 (485)
Q Consensus       220 L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~  299 (485)
                      |+.|+|++|++. .+|+..+.++..                                                    |+.
T Consensus       385 LKVLhLsyNrL~-~fpas~~~kle~----------------------------------------------------Lee  411 (1081)
T KOG0618|consen  385 LKVLHLSYNRLN-SFPASKLRKLEE----------------------------------------------------LEE  411 (1081)
T ss_pred             eeeeeecccccc-cCCHHHHhchHH----------------------------------------------------hHH
Confidence            777777777776 677665554444                                                    677


Q ss_pred             EEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCc
Q 039564          300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNN  378 (485)
Q Consensus       300 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~  378 (485)
                      |+||+|+++ .+|+.+..+..|++|...+|++. ..| .+..++.|+.+|+|.|.++...-..-...+.|++||+++|.
T Consensus       412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            778888877 67777778888888888888877 666 67777888888888888775432222223678888888886

>PLN03210 Resistant to P

Probab=99.89  E-value=1.2e-21  Score=215.53  Aligned_cols=317  Identities=20%  Similarity=0.201  Sum_probs=228.7

Q ss_pred             CCCChhhhCCC-CCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccC
Q 039564            6 FEFPNFLKQQK-HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI   84 (485)
Q Consensus         6 ~~~p~~~~~l~-~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~   84 (485)
                      ..+|..|..++ +|+.|++.++.+. .+|..|.   ..+|+.|++++|.+..+..  ++..+.. |+.|+++++.....+
T Consensus       578 ~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~---~~~L~~L~L~~s~l~~L~~--~~~~l~~-Lk~L~Ls~~~~l~~i  650 (1153)
T PLN03210        578 WHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR---PENLVKLQMQGSKLEKLWD--GVHSLTG-LRNIDLRGSKNLKEI  650 (1153)
T ss_pred             eecCcchhhcCcccEEEEecCCCCC-CCCCcCC---ccCCcEEECcCcccccccc--ccccCCC-CCEEECCCCCCcCcC
Confidence            45777777764 6999999999988 8888774   6899999999999986533  3444444 499999988655556


Q ss_pred             CCC--CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCc
Q 039564           85 PAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK  162 (485)
Q Consensus        85 ~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~  162 (485)
                      |..  +++|++|++++|.....+|..+.++++|+.|++++|.....+|..+        .+++|+.|++++|.....+|.
T Consensus       651 p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--------~l~sL~~L~Lsgc~~L~~~p~  722 (1153)
T PLN03210        651 PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--------NLKSLYRLNLSGCSRLKSFPD  722 (1153)
T ss_pred             CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--------CCCCCCEEeCCCCCCcccccc
Confidence            654  8999999999998777899999999999999999986555777643        358999999999987656664


Q ss_pred             cccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeecccccc-------ccCCccccCCCCCccEEEccCccCCccCC
Q 039564          163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHG-------EIKEHKMECGFPKLRIVDLSNNSFTGNLP  235 (485)
Q Consensus       163 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  235 (485)
                      .   ..+|++|++++|.+.. +|..+ .+++|++|.+.++....       ..+...  ...++|+.|++++|...+.+|
T Consensus       723 ~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~--~~~~sL~~L~Ls~n~~l~~lP  795 (1153)
T PLN03210        723 I---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT--MLSPSLTRLFLSDIPSLVELP  795 (1153)
T ss_pred             c---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhh--hccccchheeCCCCCCccccC
Confidence            3   4678999999999854 45443 57888888887644221       111111  345789999999998776788


Q ss_pred             hhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhh
Q 039564          236 SKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSI  315 (485)
Q Consensus       236 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  315 (485)
                      .. +..+++|+.+++.++..+..++...                             .+++|+.|++++|.....+|.. 
T Consensus       796 ~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-----------------------------~L~sL~~L~Ls~c~~L~~~p~~-  844 (1153)
T PLN03210        796 SS-IQNLHKLEHLEIENCINLETLPTGI-----------------------------NLESLESLDLSGCSRLRTFPDI-  844 (1153)
T ss_pred             hh-hhCCCCCCEEECCCCCCcCeeCCCC-----------------------------CccccCEEECCCCCcccccccc-
Confidence            65 7788888888887665443321110                             1445777777776544444432 


Q ss_pred             ccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCc
Q 039564          316 ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNN  378 (485)
Q Consensus       316 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~  378 (485)
                        .++|+.|+|++|.++ .+|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus       845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 --STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             --ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence              356777777777776 667777777777777777753333566666777777777777764

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1.6e-21  Score=214.59  Aligned_cols=342  Identities=15%  Similarity=0.176  Sum_probs=192.0

Q ss_pred             cccccCCCCCCcEEEccCCcC------cCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCcEEEccCCcccccCC
Q 039564           34 KWLLNPSMQNFSYLNLSKNSL------TGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIP  106 (485)
Q Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~p  106 (485)
                      .+|.  +|++|+.|.+..+..      ....|. ++..+...|+.|++.++.+...+... +.+|++|++.+|.+. .++
T Consensus       552 ~aF~--~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        552 NAFK--GMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHh--cCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence            3455  667777777654432      112222 33344444577777777665443333 667777777777766 466


Q ss_pred             hhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcCh
Q 039564          107 SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA  186 (485)
Q Consensus       107 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  186 (485)
                      ..+..+++|+.|+|+++.....+|.        +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|.
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD--------LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc--------cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            6666777777777776654435553        23346777777777765556777777777777777777654455554


Q ss_pred             hhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccc
Q 039564          187 WLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSF  266 (485)
Q Consensus       187 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  266 (485)
                      .+ .+++|+.|++++|.....+|..     ..+|+.|++++|.+. .+|...  .+.+|..+.+..+...... ......
T Consensus       700 ~i-~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~-~~~~~l  769 (1153)
T PLN03210        700 GI-NLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLW-ERVQPL  769 (1153)
T ss_pred             cC-CCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCccc-cccccc--cccccccccccccchhhcc-cccccc
Confidence            43 5677777777777655444432     246777777777765 555432  3444554444332111000 000000


Q ss_pred             -ccccCcCcccceEEeeecCccccc---ccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCC
Q 039564          267 -DFYGYFPHYYYSLTMSNKGQMLSY---EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDL  342 (485)
Q Consensus       267 -~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  342 (485)
                       ......+..+..+.+.++......   ...++.|+.|++++|...+.+|..+ ++++|+.|++++|.....+|..   .
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~  845 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---S  845 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---c
Confidence             000011222333333333221111   1224556777776665444555544 5667777777776544344432   3


Q ss_pred             CCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCC-CCCCCCCCCCCCCCCCC
Q 039564          343 TKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE-ANQFPTFDSSSFDGNSG  402 (485)
Q Consensus       343 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~  402 (485)
                      .+|+.|+|++|.++ .+|.++..+++|+.|++++|.-...+|. ...+..+..+.+.+++.
T Consensus       846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            56888888888887 6788888999999999998543333443 24455555555555543

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=9.2e-25  Score=198.00  Aligned_cols=312  Identities=20%  Similarity=0.196  Sum_probs=215.5

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      -..+.++-.++..+...++...+++|..|.|+...|.+|+.+++|+.|||++|+|+..-|       ++|.+++++.+|-
T Consensus        49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-------~AF~GL~~l~~Lv  121 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-------DAFKGLASLLSLV  121 (498)
T ss_pred             ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-------HhhhhhHhhhHHH
Confidence            467777777775555558899999999999998888899999999999999999995556       5566677777766


Q ss_pred             cc-CCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCC-ccccCCCCCccEEEccCc
Q 039564          151 MS-HNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKE-HKMECGFPKLRIVDLSNN  228 (485)
Q Consensus       151 Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n  228 (485)
                      +- +|+|+....+.|.++.+|+.|.+..|++.-+..++|..+++|..|.+..|.+. .++. .+  ..+..++.+.+..|
T Consensus       122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf--~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTF--QGLAAIKTLHLAQN  198 (498)
T ss_pred             hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccc--cchhccchHhhhcC
Confidence            54 49999777788999999999999999999999999999999999999999988 5555 44  67888999999988


Q ss_pred             cCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCc
Q 039564          229 SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFH  308 (485)
Q Consensus       229 ~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  308 (485)
                      .+.....-.|......+.....+..+......   .....+...+         ..    .+......+..-..+.+...
T Consensus       199 p~icdCnL~wla~~~a~~~ietsgarc~~p~r---l~~~Ri~q~~---------a~----kf~c~~esl~s~~~~~d~~d  262 (498)
T KOG4237|consen  199 PFICDCNLPWLADDLAMNPIETSGARCVSPYR---LYYKRINQED---------AR----KFLCSLESLPSRLSSEDFPD  262 (498)
T ss_pred             ccccccccchhhhHHhhchhhcccceecchHH---HHHHHhcccc---------hh----hhhhhHHhHHHhhccccCcC
Confidence            85432211111100000000000000000000   0000000000         00    00000011111111222233


Q ss_pred             ccCc-hhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-
Q 039564          309 GEIP-TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-  386 (485)
Q Consensus       309 ~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-  386 (485)
                      ++-| ..|..+++|+.|+|++|+++++-+.+|.+...++.|.|..|+|...-...|..+..|+.|+|.+|+|+...|.. 
T Consensus       263 ~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF  342 (498)
T KOG4237|consen  263 SICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF  342 (498)
T ss_pred             CcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence            3444 34888999999999999999888889999999999999999998777778888999999999999998877755 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 039564          387 NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       387 ~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      .....+..+.+-+|||.|+|.+
T Consensus       343 ~~~~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  343 QTLFSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             cccceeeeeehccCcccCccch
Confidence            3445567777888999998876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.85  E-value=1.9e-21  Score=200.55  Aligned_cols=247  Identities=26%  Similarity=0.364  Sum_probs=181.6

Q ss_pred             CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEE
Q 039564           16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL   95 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~   95 (485)
                      .+.+.|++++++++ .+|..+.    ++|+.|++++|+++.+...  ++   ..|++|++++|.++......+..|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~--l~---~nL~~L~Ls~N~LtsLP~~l~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPEN--LQ---GNIKTLYANSNQLTSIPATLPDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChh--hc---cCCCEEECCCCccccCChhhhccccEEE
Confidence            46788999999888 6777654    4789999999999875332  33   2459999999998865434467899999


Q ss_pred             ccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEc
Q 039564           96 VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL  175 (485)
Q Consensus        96 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  175 (485)
                      +++|.+. .+|..+.  .+|+.|++++|.++ .+|..+.         ++|+.|++++|.++ .+|..+.  ++|+.|++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---------~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~L  311 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---------EELRYLSVYDNSIR-TLPAHLP--SGITHLNV  311 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---------CCCcEEECCCCccc-cCcccch--hhHHHHHh
Confidence            9999988 6777664  57899999999888 6776432         57899999999988 4555443  47888999


Q ss_pred             cCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhh
Q 039564          176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY  255 (485)
Q Consensus       176 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~  255 (485)
                      ++|.++.. |..+  .++|+.|++++|.+. .+|..+    .++|+.|++++|.+. .+|..+                 
T Consensus       312 s~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l----~~sL~~L~Ls~N~L~-~LP~~l-----------------  365 (754)
T PRK15370        312 QSNSLTAL-PETL--PPGLKTLEAGENALT-SLPASL----PPELQVLDVSKNQIT-VLPETL-----------------  365 (754)
T ss_pred             cCCccccC-Cccc--cccceeccccCCccc-cCChhh----cCcccEEECCCCCCC-cCChhh-----------------
Confidence            99988753 4333  368999999999887 466554    368999999999887 566432                 


Q ss_pred             hhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccC
Q 039564          256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI  335 (485)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  335 (485)
                                                            ++.|+.|++++|.++ .+|..+.  ..|+.|++++|+++ .+
T Consensus       366 --------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~L  403 (754)
T PRK15370        366 --------------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RL  403 (754)
T ss_pred             --------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cC
Confidence                                                  223788888888887 5565543  36888888888887 44


Q ss_pred             Ccc----ccCCCCCCEEECCCCcCc
Q 039564          336 PSC----FGDLTKLESLDLSNNWFS  356 (485)
Q Consensus       336 p~~----~~~l~~L~~L~Ls~N~l~  356 (485)
                      |..    +..++.+..|++.+|.++
T Consensus       404 P~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        404 PESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             chhHHHHhhcCCCccEEEeeCCCcc
Confidence            543    344577888888888887

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.85  E-value=2.3e-21  Score=199.98  Aligned_cols=247  Identities=25%  Similarity=0.334  Sum_probs=156.6

Q ss_pred             CCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcc
Q 039564           42 QNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS  121 (485)
Q Consensus        42 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  121 (485)
                      .+...|++++++++.++.  .+   ...++.|++++|+++........+|++|++++|+++ .+|..+.  .+|+.|+|+
T Consensus       178 ~~~~~L~L~~~~LtsLP~--~I---p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLTTIPA--CI---PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcCcCCc--cc---ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            346677777777776432  12   233477777777777544444667777777777777 4565443  467777777


Q ss_pred             cCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeec
Q 039564          122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQS  201 (485)
Q Consensus       122 ~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  201 (485)
                      +|.+. .+|..+.         .+|+.|++++|.++ .+|+.+.  ++|++|++++|+++.. |..+.  ++|+.|++++
T Consensus       250 ~N~L~-~LP~~l~---------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        250 INRIT-ELPERLP---------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQS  313 (754)
T ss_pred             CCccC-cCChhHh---------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcC
Confidence            77776 6665432         46777777777777 4565543  4677777777777543 33222  3677777777


Q ss_pred             cccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEe
Q 039564          202 NNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM  281 (485)
Q Consensus       202 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (485)
                      |.+. .+|..+    .++|+.|++++|.++ .+|..+                                           
T Consensus       314 N~Lt-~LP~~l----~~sL~~L~Ls~N~Lt-~LP~~l-------------------------------------------  344 (754)
T PRK15370        314 NSLT-ALPETL----PPGLKTLEAGENALT-SLPASL-------------------------------------------  344 (754)
T ss_pred             Cccc-cCCccc----cccceeccccCCccc-cCChhh-------------------------------------------
Confidence            7776 344433    256777777777776 344321                                           


Q ss_pred             eecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcc
Q 039564          282 SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQ  361 (485)
Q Consensus       282 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  361 (485)
                                  ++.|+.|++++|+++ .+|..+.  ++|+.|+|++|+++ .+|..+.  .+|+.|++++|++. .+|.
T Consensus       345 ------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~  405 (754)
T PRK15370        345 ------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPE  405 (754)
T ss_pred             ------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCch
Confidence                        123777777777776 4555442  57777777777777 4555443  35777777777777 4444


Q ss_pred             c----ccCCCCCCEEeccCCccc
Q 039564          362 Q----LTGLTFLEFFNVSHNNLT  380 (485)
Q Consensus       362 ~----~~~l~~L~~L~l~~N~l~  380 (485)
                      .    +..++.+..+++.+|+++
T Consensus       406 sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        406 SLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hHHHHhhcCCCccEEEeeCCCcc
Confidence            3    334466777777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=1.4e-19  Score=173.60  Aligned_cols=189  Identities=24%  Similarity=0.225  Sum_probs=85.8

Q ss_pred             EEECCCCcCCC-CCCcccccCCCCCCcEEEccCCcCcCcCCC--CCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEc
Q 039564           20 ALDLSSNKLHG-NIPKWLLNPSMQNFSYLNLSKNSLTGFDQH--PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV   96 (485)
Q Consensus        20 ~L~Ls~n~~~~-~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l   96 (485)
                      .|+|..+.+++ .....+.  .+.+|+.|+++++.++.....  +......+.+++++++++.+.+. +           
T Consensus         2 ~l~L~~~~l~~~~~~~~~~--~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~-----------   67 (319)
T cd00116           2 QLSLKGELLKTERATELLP--KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-P-----------   67 (319)
T ss_pred             ccccccCcccccchHHHHH--HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-c-----------
Confidence            35666666652 2223333  456677777777766431100  00111122225555555443310 0           


Q ss_pred             cCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc----cCCccccCC-CCCc
Q 039564           97 SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG----RIPKSLANC-AVLE  171 (485)
Q Consensus        97 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l-~~L~  171 (485)
                         .....++..+..+++|+.|++++|.+.+..+..+..+   ... ++|++|++++|.+++    .+...+..+ ++|+
T Consensus        68 ---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~  140 (319)
T cd00116          68 ---RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL---LRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE  140 (319)
T ss_pred             ---hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH---hcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence               0001233445555666666666666553333333222   111 346666666666552    122233444 5666


Q ss_pred             EEEccCCcccCC----cChhhhCCCCCCEEEeeccccccc----cCCccccCCCCCccEEEccCccCC
Q 039564          172 IIDLGNNQIIDT----FPAWLGTLSELDILVLQSNNFHGE----IKEHKMECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       172 ~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~l~~n~l~  231 (485)
                      .|++++|.+++.    .+..+..+++|++|++++|.+.+.    ++..+  ..+++|+.|++++|.+.
T Consensus       141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL--KANCNLEVLDLNNNGLT  206 (319)
T ss_pred             EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH--HhCCCCCEEeccCCccC
Confidence            666666665522    222344455566666666655531    11111  22345666666655554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=2.3e-19  Score=172.03  Aligned_cols=265  Identities=24%  Similarity=0.228  Sum_probs=174.2

Q ss_pred             CCCCcEEEccCCcccc----cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcc
Q 039564           88 PTKTRHYLVSKNNLTG----EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS  163 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~  163 (485)
                      ...|++|+++++.++.    .++..+...++|+.++++++.+.+ .+..+..+...+..+++|+.|++++|.+.+..+..
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            3446666666666642    245556677889999999887762 34444433355666789999999999998666666


Q ss_pred             ccCCCC---CcEEEccCCcccC----CcChhhhCC-CCCCEEEeeccccccccCCcc--ccCCCCCccEEEccCccCCcc
Q 039564          164 LANCAV---LEIIDLGNNQIID----TFPAWLGTL-SELDILVLQSNNFHGEIKEHK--MECGFPKLRIVDLSNNSFTGN  233 (485)
Q Consensus       164 ~~~l~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~  233 (485)
                      +..+.+   |++|++++|.+++    .+...+..+ ++|++|++++|.+++.....+  ....+++|+.|++++|.+.+.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            555554   9999999998863    223345566 899999999999874322211  114567899999999988742


Q ss_pred             CChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc---
Q 039564          234 LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE---  310 (485)
Q Consensus       234 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---  310 (485)
                      ....+...+..                                                 .+.|+.|++++|.+.+.   
T Consensus       181 ~~~~l~~~l~~-------------------------------------------------~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         181 GIRALAEGLKA-------------------------------------------------NCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHHHHHHHHHh-------------------------------------------------CCCCCEEeccCCccChHHHH
Confidence            11111111110                                                 13488899999988643   


Q ss_pred             -CchhhccCCCCCEEeCcCceecccCCcccc-----CCCCCCEEECCCCcCcc----cCcccccCCCCCCEEeccCCccc
Q 039564          311 -IPTSIANLKGLQVLSLANNNLEGHIPSCFG-----DLTKLESLDLSNNWFSG----QIPQQLTGLTFLEFFNVSHNNLT  380 (485)
Q Consensus       311 -~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~  380 (485)
                       +...+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++.    .+...+..++.|+.+++++|.++
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence             334566788899999999988753332222     23789999999999872    23445666788999999999987


Q ss_pred             cc----CCCC-CCC-CCCCCCCCCCCCC
Q 039564          381 GP----IPEA-NQF-PTFDSSSFDGNSG  402 (485)
Q Consensus       381 ~~----~p~~-~~~-~~l~~~~~~~n~~  402 (485)
                      ..    .... ..+ ..+..+++.+||+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         292 EEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            43    1111 122 3455666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=2.2e-19  Score=145.08  Aligned_cols=164  Identities=34%  Similarity=0.587  Sum_probs=126.9

Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCcc
Q 039564          142 NGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLR  221 (485)
Q Consensus       142 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  221 (485)
                      .+..++.|.+|+|+++ .+|..++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|  +.+|.|+
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--CCCchhh
Confidence            3467777788888887 67777888888888888888874 45666788888888888888876 677777  7788888


Q ss_pred             EEEccCccCCc-cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEE
Q 039564          222 IVDLSNNSFTG-NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAV  300 (485)
Q Consensus       222 ~L~l~~n~l~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L  300 (485)
                      .||+.+|.+.. .+|+.+|.                                                     +..|+.|
T Consensus       106 vldltynnl~e~~lpgnff~-----------------------------------------------------m~tlral  132 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFY-----------------------------------------------------MTTLRAL  132 (264)
T ss_pred             hhhccccccccccCCcchhH-----------------------------------------------------HHHHHHH
Confidence            88888887764 34554432                                                     2237777


Q ss_pred             EcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCC
Q 039564          301 ILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGL  366 (485)
Q Consensus       301 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  366 (485)
                      +|++|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|+.|.+.+|+++ .+|..++++
T Consensus       133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            88888887 78888899999999999999887 78888889999999999999998 666655544

>PLN03150 hypothetical protein; Provisional

Probab=99.65  E-value=4e-16  Score=160.74  Aligned_cols=118  Identities=39%  Similarity=0.702  Sum_probs=106.4

Q ss_pred             cccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564          296 ILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS  375 (485)
Q Consensus       296 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  375 (485)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|+.++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          376 HNNLTGPIPEAN--QFPTFDSSSFDGNSGLCGKPLFKECE  413 (485)
Q Consensus       376 ~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~c~  413 (485)
                      +|+++|.+|...  .......+.+.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999752  22344567899999999987656663

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=6e-18  Score=136.84  Aligned_cols=154  Identities=31%  Similarity=0.500  Sum_probs=74.7

Q ss_pred             CCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 039564           41 MQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDL  120 (485)
Q Consensus        41 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  120 (485)
                      +.+...|.||+|+++.+.|.  +..+.++ +.|++++|+|+                      .+|..++.+++|+.|++
T Consensus        32 ~s~ITrLtLSHNKl~~vppn--ia~l~nl-evln~~nnqie----------------------~lp~~issl~klr~lnv   86 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPN--IAELKNL-EVLNLSNNQIE----------------------ELPTSISSLPKLRILNV   86 (264)
T ss_pred             hhhhhhhhcccCceeecCCc--HHHhhhh-hhhhcccchhh----------------------hcChhhhhchhhhheec
Confidence            45555566666666554432  4444444 55555555555                      34444444555555555


Q ss_pred             ccCcccccCCCccccCcccccCCCCccEEEccCCcccc-cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEe
Q 039564          121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG-RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVL  199 (485)
Q Consensus       121 ~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  199 (485)
                      +-|++. ..|..+|.+       +.|+.||+++|.+.. ..|..|..++.|+.|+|++|.+ ..+|..++.+++|+.|.+
T Consensus        87 gmnrl~-~lprgfgs~-------p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~l  157 (264)
T KOG0617|consen   87 GMNRLN-ILPRGFGSF-------PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSL  157 (264)
T ss_pred             chhhhh-cCccccCCC-------chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEee
Confidence            444444 444433332       444555554444432 2344444444455555555544 333444455555555555


Q ss_pred             eccccccccCCccccCCCCCccEEEccCccCC
Q 039564          200 QSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       200 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  231 (485)
                      ..|.+. .+|.++  +.+..|++|.+.+|+++
T Consensus       158 rdndll-~lpkei--g~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  158 RDNDLL-SLPKEI--GDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccCchh-hCcHHH--HHHHHHHHHhcccceee
Confidence            555444 444444  44445555555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.34  E-value=3.9e-14  Score=135.26  Aligned_cols=172  Identities=28%  Similarity=0.430  Sum_probs=89.9

Q ss_pred             CccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEE
Q 039564          145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVD  224 (485)
Q Consensus       145 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  224 (485)
                      .-...|++.|++. .+|..+..+..|+.+.|..|.+ ..+|.++..+..|.+|+++.|+++ .+|..+  +.++ |+.|-
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l--C~lp-Lkvli  149 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGL--CDLP-LKVLI  149 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhh--hcCc-ceeEE
Confidence            3344555555555 4555555555555555555555 344445555555555555555554 444444  3333 55555


Q ss_pred             ccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCC
Q 039564          225 LSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSS  304 (485)
Q Consensus       225 l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~  304 (485)
                      +++|+++ .+|..+- .                                                    ...|..||.+.
T Consensus       150 ~sNNkl~-~lp~~ig-~----------------------------------------------------~~tl~~ld~s~  175 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIG-L----------------------------------------------------LPTLAHLDVSK  175 (722)
T ss_pred             EecCccc-cCCcccc-c----------------------------------------------------chhHHHhhhhh
Confidence            5555554 4443210 0                                                    12244455555


Q ss_pred             CcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccc
Q 039564          305 NGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT  380 (485)
Q Consensus       305 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  380 (485)
                      |.+. .+|..++++.+|+.|++..|++. .+|..+..++ |..||+|+|+++ .+|-.|..++.|++|-|.+|+++
T Consensus       176 nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            5554 45555555555666666666555 4455555433 555666666665 55555666666666666666554

>PLN03150 hypothetical protein; Provisional

Probab=99.34  E-value=6.1e-12  Score=129.93  Aligned_cols=91  Identities=36%  Similarity=0.573  Sum_probs=82.2

Q ss_pred             cccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCC-CCCCEE
Q 039564          294 PYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGL-TFLEFF  372 (485)
Q Consensus       294 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L  372 (485)
                      ++.|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|.+++.+|..+... ..+..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            4459999999999999999999999999999999999999999999999999999999999999999988763 467789


Q ss_pred             eccCCcccccCC
Q 039564          373 NVSHNNLTGPIP  384 (485)
Q Consensus       373 ~l~~N~l~~~~p  384 (485)
                      ++.+|...+..|
T Consensus       521 ~~~~N~~lc~~p  532 (623)
T PLN03150        521 NFTDNAGLCGIP  532 (623)
T ss_pred             EecCCccccCCC
Confidence            999998776544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.32  E-value=5e-14  Score=134.51  Aligned_cols=194  Identities=25%  Similarity=0.401  Sum_probs=129.1

Q ss_pred             CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCC
Q 039564           88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC  167 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  167 (485)
                      +..-...+++.|.+. .+|..++.+..|+.+.|..|.+. .+|..++++       ..|+.|+|+.|+++ ..|..++.+
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L-------~~lt~l~ls~NqlS-~lp~~lC~l  143 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNL-------EALTFLDLSSNQLS-HLPDGLCDL  143 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhh-------hHHHHhhhccchhh-cCChhhhcC
Confidence            444455666777766 67777777777777777777776 677666554       66777777777777 666666666


Q ss_pred             CCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhccccccee
Q 039564          168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF  247 (485)
Q Consensus       168 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  247 (485)
                      + |+.|-+++|++ +.+|..++.++.|..|+.+.|.+. .+|..+  +++.+|+.|.+..|.+. .+|.... .+     
T Consensus       144 p-Lkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~-slpsql--~~l~slr~l~vrRn~l~-~lp~El~-~L-----  211 (722)
T KOG0532|consen  144 P-LKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL--GYLTSLRDLNVRRNHLE-DLPEELC-SL-----  211 (722)
T ss_pred             c-ceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhh-hchHHh--hhHHHHHHHHHhhhhhh-hCCHHHh-CC-----
Confidence            5 77777777777 445555666677777777777776 555555  66777777777777766 5554321 11     


Q ss_pred             ccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCc
Q 039564          248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLA  327 (485)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  327 (485)
                                                                      .|..||+|+|++. .+|..|..|.+|++|-|.
T Consensus       212 ------------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  212 ------------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLE  242 (722)
T ss_pred             ------------------------------------------------ceeeeecccCcee-ecchhhhhhhhheeeeec
Confidence                                                            1777888888887 778888888888888888


Q ss_pred             CceecccCCcccc---CCCCCCEEECCCC
Q 039564          328 NNNLEGHIPSCFG---DLTKLESLDLSNN  353 (485)
Q Consensus       328 ~N~l~~~~p~~~~---~l~~L~~L~Ls~N  353 (485)
                      +|.+. ..|..+.   ...--++|+..-+
T Consensus       243 nNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  243 NNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             cCCCC-CChHHHHhccceeeeeeecchhc
Confidence            88887 5554432   2233455666555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=7.8e-12  Score=123.38  Aligned_cols=82  Identities=44%  Similarity=0.612  Sum_probs=38.2

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                      |+.+.+++|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|+++. ++. +..+..++.+++++
T Consensus       211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccC
Confidence            334444444322 33334444455555555555544 224444455555555555555552 222 44555555555555


Q ss_pred             Cccccc
Q 039564          377 NNLTGP  382 (485)
Q Consensus       377 N~l~~~  382 (485)
                      |.++..
T Consensus       287 n~~~~~  292 (394)
T COG4886         287 NSLSNA  292 (394)
T ss_pred             cccccc
Confidence            555433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=1.9e-11  Score=120.72  Aligned_cols=197  Identities=34%  Similarity=0.450  Sum_probs=154.0

Q ss_pred             EEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCC-CCccEEEcCCCcccccC--CCCCCCCcEEEc
Q 039564           20 ALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWS-SGEFTLDLSSNFLQGPI--PAPPTKTRHYLV   96 (485)
Q Consensus        20 ~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-~lL~~L~l~~n~l~~~~--~~~~~~L~~L~l   96 (485)
                      .++++.+.+..... .+.  .++.++.|++.+|.++.+.+.   .... ..|+.|++++|.+....  -..+++|+.|++
T Consensus        97 ~l~~~~~~~~~~~~-~~~--~~~~l~~L~l~~n~i~~i~~~---~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELL--ELTNLTSLDLDNNNITDIPPL---IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDL  170 (394)
T ss_pred             eeeccccccccCch-hhh--cccceeEEecCCcccccCccc---cccchhhcccccccccchhhhhhhhhcccccccccc
Confidence            58888888752333 333  567899999999999987654   3344 24499999999998762  334999999999


Q ss_pred             cCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEcc
Q 039564           97 SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG  176 (485)
Q Consensus        97 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  176 (485)
                      ++|++. .+|...+..+.|+.|++++|.+. .+|..++.       ...|+++++++|.+. ..+..+..+.++..+.+.
T Consensus       171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~  240 (394)
T COG4886         171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELS  240 (394)
T ss_pred             CCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-------hhhhhhhhhcCCcce-ecchhhhhcccccccccC
Confidence            999998 67766668899999999999998 77764322       256999999999655 577788899999999999


Q ss_pred             CCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564          177 NNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK  237 (485)
Q Consensus       177 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  237 (485)
                      +|++.. .+..++.++++++|++++|.+. .++. +  ..+.+++.|++++|.+....+..
T Consensus       241 ~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~--~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         241 NNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-L--GSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             Cceeee-ccchhccccccceecccccccc-cccc-c--cccCccCEEeccCccccccchhh
Confidence            998854 3667888999999999999998 4444 4  67899999999999988555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.19  E-value=1.9e-12  Score=117.03  Aligned_cols=243  Identities=21%  Similarity=0.226  Sum_probs=145.3

Q ss_pred             CCCCcEEEccCCcccccC----ChhhcCCCCCCEEEcccC---cccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564           88 PTKTRHYLVSKNNLTGEI----PSWICNLSSLYILDLSDN---NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI  160 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~  160 (485)
                      ...++.+++++|.+....    ...+.+.++|+..++++-   +....+|..+.-+..++.+.+.|++++||+|.+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            567778888888776433    234556678888887764   2223456666555566677778888888888886544


Q ss_pred             Ccc----ccCCCCCcEEEccCCcccCCcChh-------------hhCCCCCCEEEeeccccccccCCcc--ccCCCCCcc
Q 039564          161 PKS----LANCAVLEIIDLGNNQIIDTFPAW-------------LGTLSELDILVLQSNNFHGEIKEHK--MECGFPKLR  221 (485)
Q Consensus       161 ~~~----~~~l~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~  221 (485)
                      +..    +..+..|++|.|.+|.+...-...             .+.-++|+++....|.+...-...+  .+...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            443    346778888888888763221111             1223566666666666542211110  113446667


Q ss_pred             EEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEE
Q 039564          222 IVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVI  301 (485)
Q Consensus       222 ~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~  301 (485)
                      .+.+++|.+...--...+..+                                                 ..++.|+.||
T Consensus       189 evr~~qN~I~~eG~~al~eal-------------------------------------------------~~~~~LevLd  219 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEAL-------------------------------------------------EHCPHLEVLD  219 (382)
T ss_pred             eEEEecccccCchhHHHHHHH-------------------------------------------------HhCCcceeee
Confidence            777776665421110100000                                                 0134477777


Q ss_pred             cCCCcCccc----CchhhccCCCCCEEeCcCceecccCCccc-----cCCCCCCEEECCCCcCccc----CcccccCCCC
Q 039564          302 LSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGHIPSCF-----GDLTKLESLDLSNNWFSGQ----IPQQLTGLTF  368 (485)
Q Consensus       302 Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~  368 (485)
                      |.+|-++..    +...+..+++|+.|++++|.+...-..+|     ...+.|++|.+.+|.++..    +-......+.
T Consensus       220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d  299 (382)
T KOG1909|consen  220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD  299 (382)
T ss_pred             cccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence            777776643    33445667788888888887764333222     2467888888888888742    2233455778


Q ss_pred             CCEEeccCCcc
Q 039564          369 LEFFNVSHNNL  379 (485)
Q Consensus       369 L~~L~l~~N~l  379 (485)
                      |..|+|++|.+
T Consensus       300 L~kLnLngN~l  310 (382)
T KOG1909|consen  300 LEKLNLNGNRL  310 (382)
T ss_pred             hHHhcCCcccc
Confidence            88888888887

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=7.5e-12  Score=116.26  Aligned_cols=207  Identities=19%  Similarity=0.189  Sum_probs=114.5

Q ss_pred             CCccEEEccCCcccccCC--ccccCCCCCcEEEccCCcccCCcC--hhhhCCCCCCEEEeeccccccccCCccccCCCCC
Q 039564          144 SNLGIIDMSHNLLQGRIP--KSLANCAVLEIIDLGNNQIIDTFP--AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPK  219 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  219 (485)
                      .+|+++.|.++... ..+  .....+++++.|||+.|-+....+  .....+++|+.|+++.|.+........ ...+++
T Consensus       121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~~  198 (505)
T KOG3207|consen  121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLSH  198 (505)
T ss_pred             HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhhh
Confidence            44555555555544 222  233455666666666665543322  223356666666666666542222221 134556


Q ss_pred             ccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccE
Q 039564          220 LRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA  299 (485)
Q Consensus       220 L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~  299 (485)
                      |+.|.++.|+++-.--..+...++++..+.+..+.....                            .......+..|+.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----------------------------~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----------------------------KATSTKILQTLQE  250 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----------------------------ecchhhhhhHHhh
Confidence            666666666655222222333444444444433210000                            0001112455888


Q ss_pred             EEcCCCcCcccC-chhhccCCCCCEEeCcCceeccc-CCcc-----ccCCCCCCEEECCCCcCcccCc--ccccCCCCCC
Q 039564          300 VILSSNGFHGEI-PTSIANLKGLQVLSLANNNLEGH-IPSC-----FGDLTKLESLDLSNNWFSGQIP--QQLTGLTFLE  370 (485)
Q Consensus       300 L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~  370 (485)
                      |||++|++.... -...+.++.|..|+++.+.+... .|++     ...+++|++|+++.|++.. .+  ..+..+++|+
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLK  329 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhh
Confidence            999998876322 24467788899999998887643 3333     3457889999999999852 22  3345567788


Q ss_pred             EEeccCCcccc
Q 039564          371 FFNVSHNNLTG  381 (485)
Q Consensus       371 ~L~l~~N~l~~  381 (485)
                      .+.+..|.++.
T Consensus       330 ~l~~~~n~ln~  340 (505)
T KOG3207|consen  330 HLRITLNYLNK  340 (505)
T ss_pred             hhhcccccccc
Confidence            88888888874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.15  E-value=9.6e-12  Score=110.09  Aligned_cols=199  Identities=22%  Similarity=0.206  Sum_probs=135.0

Q ss_pred             CCCCCEEECCCC--------cCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccccc---
Q 039564           15 QKHLKALDLSSN--------KLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGP---   83 (485)
Q Consensus        15 l~~L~~L~Ls~n--------~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~---   83 (485)
                      +..|.+|-.++.        -+...+|-.+.  .+++|..+.+|++.-..+..   +....+-|+++...+..++..   
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~--~f~~l~~~~~s~~~~~~i~~---~~~~kptl~t~~v~~s~~~~~~~l  255 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLN--AFRNLKTLKFSALSTENIVD---IELLKPTLQTICVHNTTIQDVPSL  255 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchH--Hhhhhheeeeeccchhheec---eeecCchhheeeeecccccccccc
Confidence            456666666643        12223333333  45677777777765433221   222333336666665544321   


Q ss_pred             CCC-----------------------CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccc
Q 039564           84 IPA-----------------------PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTF  140 (485)
Q Consensus        84 ~~~-----------------------~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~  140 (485)
                      .|.                       .-..|+++|+++|.|+ .+...+.-.|.++.|++++|.+. .+        +.+
T Consensus       256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v--------~nL  325 (490)
T KOG1259|consen  256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV--------QNL  325 (490)
T ss_pred             cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee--------hhh
Confidence            111                       1457899999999998 67777888899999999999987 33        224


Q ss_pred             cCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCc
Q 039564          141 MNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKL  220 (485)
Q Consensus       141 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  220 (485)
                      +.+++|+.||||+|.++ .+..+-..+.++++|.|+.|.+...  +.++.+-+|..|++++|++. .+...-..+.+|.|
T Consensus       326 a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCL  401 (490)
T KOG1259|consen  326 AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCL  401 (490)
T ss_pred             hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchh-hHHHhcccccccHH
Confidence            56689999999999988 5555556788999999999988543  44677888999999999987 44333223789999


Q ss_pred             cEEEccCccCCc
Q 039564          221 RIVDLSNNSFTG  232 (485)
Q Consensus       221 ~~L~l~~n~l~~  232 (485)
                      +.+.+.+|++.+
T Consensus       402 E~l~L~~NPl~~  413 (490)
T KOG1259|consen  402 ETLRLTGNPLAG  413 (490)
T ss_pred             HHHhhcCCCccc
Confidence            999999999983

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=8.9e-12  Score=115.78  Aligned_cols=207  Identities=18%  Similarity=0.199  Sum_probs=116.7

Q ss_pred             hCCCCCCEEECCCCcCCCCCC--cccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---
Q 039564           13 KQQKHLKALDLSSNKLHGNIP--KWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---   87 (485)
Q Consensus        13 ~~l~~L~~L~Ls~n~~~~~~p--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---   87 (485)
                      .++++|+...|.+..+. ..+  ....  .|++++.||||+|-++...+...+...++.|+.|+++.|++.......   
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k--~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSK--ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhh--hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence            35667777777776665 222  1233  567777777777766543222123333444477777777665433322   


Q ss_pred             -CCCCcEEEccCCccccc-CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCC--cc
Q 039564           88 -PTKTRHYLVSKNNLTGE-IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP--KS  163 (485)
Q Consensus        88 -~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~--~~  163 (485)
                       ++.|+.|.++.|.++-. +-.....+|+|+.|+|..|......-       .....++.|++|||++|.+.+ .+  ..
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~-------~~~~i~~~L~~LdLs~N~li~-~~~~~~  266 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA-------TSTKILQTLQELDLSNNNLID-FDQGYK  266 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec-------chhhhhhHHhhccccCCcccc-cccccc
Confidence             66777777777777621 12223456777777777774211111       112234667777777777662 33  34


Q ss_pred             ccCCCCCcEEEccCCcccCC-cChh-----hhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564          164 LANCAVLEIIDLGNNQIIDT-FPAW-----LGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       164 ~~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  231 (485)
                      ...++.|+.|+++.+.+..+ .|+.     ...+++|++|++..|++. ..+..--...+++|+.|.+..|.+.
T Consensus       267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            55677777777777776543 1222     235677777887777774 2222111134567777777777665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=6.7e-11  Score=100.34  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=12.7

Q ss_pred             ccCCCCCcEEEccCCcccCCcC---hhhhCCCCCCEEE
Q 039564          164 LANCAVLEIIDLGNNQIIDTFP---AWLGTLSELDILV  198 (485)
Q Consensus       164 ~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~  198 (485)
                      +..+++|++|++.+|+++...-   ..+..+|+|+.||
T Consensus       109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            3445555555555555543211   1244556666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=4e-11  Score=101.67  Aligned_cols=104  Identities=30%  Similarity=0.386  Sum_probs=25.2

Q ss_pred             CCcEEEccCCcccccCChhhc-CCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccc-cCC
Q 039564           90 KTRHYLVSKNNLTGEIPSWIC-NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-ANC  167 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l  167 (485)
                      .+++|+|++|.|+. +. .++ .+.+|+.|++++|.++ .++        .+..++.|++|++++|+|+. +.+.+ ..+
T Consensus        20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~--------~l~~L~~L~~L~L~~N~I~~-i~~~l~~~l   87 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE--------GLPGLPRLKTLDLSNNRISS-ISEGLDKNL   87 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T--------T----TT--EEE--SS---S--CHHHHHH-
T ss_pred             cccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc--------CccChhhhhhcccCCCCCCc-cccchHHhC
Confidence            34444444444442 11 222 3455555555555555 221        12334555555555555552 22223 235


Q ss_pred             CCCcEEEccCCcccCCc-ChhhhCCCCCCEEEeeccccc
Q 039564          168 AVLEIIDLGNNQIIDTF-PAWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       168 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  205 (485)
                      ++|++|++++|+|.... -..+..+++|+.|++.+|++.
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            55555555555554321 133445555555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=2.5e-11  Score=107.50  Aligned_cols=132  Identities=30%  Similarity=0.281  Sum_probs=93.5

Q ss_pred             CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccc
Q 039564          190 TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFY  269 (485)
Q Consensus       190 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  269 (485)
                      ....|++++|++|.++ .+..+.  .-.|.++.|++++|++. .+..  +.                             
T Consensus       282 TWq~LtelDLS~N~I~-~iDESv--KL~Pkir~L~lS~N~i~-~v~n--La-----------------------------  326 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESV--KLAPKLRRLILSQNRIR-TVQN--LA-----------------------------  326 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhh--hhccceeEEecccccee-eehh--hh-----------------------------
Confidence            3456777888888776 555554  55678888888888776 2221  11                             


Q ss_pred             cCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEE
Q 039564          270 GYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLD  349 (485)
Q Consensus       270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  349 (485)
                                             .+++|+.||||+|.++ .+..+-..+-++++|.|+.|.+...  ..+..+-+|..||
T Consensus       327 -----------------------~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLD  380 (490)
T KOG1259|consen  327 -----------------------ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLD  380 (490)
T ss_pred             -----------------------hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecc
Confidence                                   1344788888888777 5555556778888999999887522  3467788889999


Q ss_pred             CCCCcCcccC-cccccCCCCCCEEeccCCccccc
Q 039564          350 LSNNWFSGQI-PQQLTGLTFLEFFNVSHNNLTGP  382 (485)
Q Consensus       350 Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~  382 (485)
                      +++|+|.... -..++++|.|+.+.|.+|++.+.
T Consensus       381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            9999887532 24678899999999999988753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=3.6e-10  Score=78.81  Aligned_cols=61  Identities=39%  Similarity=0.627  Sum_probs=39.4

Q ss_pred             CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564          319 KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL  379 (485)
Q Consensus       319 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l  379 (485)
                      ++|++|++++|+++...+..|..+++|++|++++|.+....|+.|..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566666666666655555666666666666666666655556666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=1.1e-09  Score=76.25  Aligned_cols=59  Identities=37%  Similarity=0.491  Sum_probs=35.2

Q ss_pred             CccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccc
Q 039564          145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN  203 (485)
Q Consensus       145 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  203 (485)
                      +|++|++++|.++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45566666666664444555666666666666666655555566666666666666554

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.90  E-value=1.5e-10  Score=104.94  Aligned_cols=214  Identities=20%  Similarity=0.287  Sum_probs=135.7

Q ss_pred             hhhCCCCCCEEECCCC---cCCCCCCc-------ccccCCCCCCcEEEccCCcCcCcCC--CCCCCCCCCCccEEEcCCC
Q 039564           11 FLKQQKHLKALDLSSN---KLHGNIPK-------WLLNPSMQNFSYLNLSKNSLTGFDQ--HPSVFPWSSGEFTLDLSSN   78 (485)
Q Consensus        11 ~~~~l~~L~~L~Ls~n---~~~~~~p~-------~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~lL~~L~l~~n   78 (485)
                      .+.+.++|+.-++|.-   +....+|+       .+.  .+++|++||||+|.|.--.+  ..++......|++|.|.+|
T Consensus        53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~--~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~  130 (382)
T KOG1909|consen   53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALL--GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC  130 (382)
T ss_pred             HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHh--cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence            4455566666666542   23334443       222  34566777777666542111  0011222333366667666


Q ss_pred             ccccc----------------CCCCCCCCcEEEccCCccccc----CChhhcCCCCCCEEEcccCcccccCCCccccCcc
Q 039564           79 FLQGP----------------IPAPPTKTRHYLVSKNNLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSD  138 (485)
Q Consensus        79 ~l~~~----------------~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  138 (485)
                      .+.-.                .....+.|+.+...+|.+...    +...|...+.|+.+.+.+|.|.   |..+..+..
T Consensus       131 Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~---~eG~~al~e  207 (382)
T KOG1909|consen  131 GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR---PEGVTALAE  207 (382)
T ss_pred             CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc---CchhHHHHH
Confidence            65411                011267888999888888632    2345677789999999999765   333333336


Q ss_pred             cccCCCCccEEEccCCccccc----CCccccCCCCCcEEEccCCcccCCcChhhh-----CCCCCCEEEeecccccccc-
Q 039564          139 TFMNGSNLGIIDMSHNLLQGR----IPKSLANCAVLEIIDLGNNQIIDTFPAWLG-----TLSELDILVLQSNNFHGEI-  208 (485)
Q Consensus       139 ~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~-  208 (485)
                      .|..++.|++|||.+|.++..    +...+..+++|+.|++++|.+...-..+|.     ..++|+.|.+.+|.++..- 
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            677889999999999998743    345667788999999999988755443332     4689999999999886321 


Q ss_pred             ---CCccccCCCCCccEEEccCccCC
Q 039564          209 ---KEHKMECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       209 ---~~~~~~~~l~~L~~L~l~~n~l~  231 (485)
                         ....  ...+.|+.|++++|.+.
T Consensus       288 ~~la~~~--~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  288 LALAACM--AEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHH--hcchhhHHhcCCccccc
Confidence               1112  34688999999999984

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=3.9e-10  Score=111.56  Aligned_cols=241  Identities=23%  Similarity=0.246  Sum_probs=128.8

Q ss_pred             cEEEcCCCcccccCC--CCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccE
Q 039564           71 FTLDLSSNFLQGPIP--APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGI  148 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~  148 (485)
                      +.+.+..|.+.....  ..+.+|+.|++.+|.+.. +...+..+++|++|++++|.|+...         .+..++.|+.
T Consensus        75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~---------~l~~l~~L~~  144 (414)
T KOG0531|consen   75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE---------GLSTLTLLKE  144 (414)
T ss_pred             Hhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc---------chhhccchhh
Confidence            555555555554222  125566666666666652 2222455666666666666665221         1223345666


Q ss_pred             EEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccC
Q 039564          149 IDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN  227 (485)
Q Consensus       149 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~  227 (485)
                      |++++|.|..  ...+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.. +...   ..+..+..+++..
T Consensus       145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~~~---~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-IEGL---DLLKKLVLLSLLD  217 (414)
T ss_pred             heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-ccch---HHHHHHHHhhccc
Confidence            6666666652  2334445666666666666654433 1 3445555566666655541 1111   1122333334444


Q ss_pred             ccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcC
Q 039564          228 NSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGF  307 (485)
Q Consensus       228 n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  307 (485)
                      |.++..-+...   ..                                                  ...|+.+++++|.+
T Consensus       218 n~i~~~~~l~~---~~--------------------------------------------------~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  218 NKISKLEGLNE---LV--------------------------------------------------MLHLRELYLSGNRI  244 (414)
T ss_pred             ccceeccCccc---ch--------------------------------------------------hHHHHHHhcccCcc
Confidence            44431111000   00                                                  00267778888887


Q ss_pred             cccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCccc---Ccc-cccCCCCCCEEeccCCcccccC
Q 039564          308 HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQ---IPQ-QLTGLTFLEFFNVSHNNLTGPI  383 (485)
Q Consensus       308 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~-~~~~l~~L~~L~l~~N~l~~~~  383 (485)
                      . ..+..+..+..+..|++++|++...  ..+...+.+..+....|.+...   ... .....+.+..+.+.+|+.....
T Consensus       245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  245 S-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             c-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            6 4445566778888888888887633  2345566777777777776532   111 1455677888888888776544


Q ss_pred             C
Q 039564          384 P  384 (485)
Q Consensus       384 p  384 (485)
                      +
T Consensus       322 ~  322 (414)
T KOG0531|consen  322 S  322 (414)
T ss_pred             c
Confidence            3

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=8.4e-09  Score=109.26  Aligned_cols=131  Identities=25%  Similarity=0.375  Sum_probs=92.9

Q ss_pred             CCCCCCccEEEcCCCcccccCCCC-CCCCcEEEccCCc--ccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccc
Q 039564           64 FPWSSGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKNN--LTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTF  140 (485)
Q Consensus        64 ~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~  140 (485)
                      ...... +.+.+-+|.+....-.. .+.|++|-+..|.  +.......|..++.|++|||++|.-.+.+|+.++.+    
T Consensus       520 ~~~~~~-rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L----  594 (889)
T KOG4658|consen  520 KSWNSV-RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL----  594 (889)
T ss_pred             cchhhe-eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh----
Confidence            333344 66777777665433322 5578888877775  443334457778888888888876666788777664    


Q ss_pred             cCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccc
Q 039564          141 MNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN  203 (485)
Q Consensus       141 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  203 (485)
                         -+|+.|++++..+. .+|..+.++..|.+|++..+.-....|.....+++|++|.+..-.
T Consensus       595 ---i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  595 ---VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ---hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence               68888888888888 788888888888888888776555566666678888888876554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=9e-10  Score=108.95  Aligned_cols=196  Identities=24%  Similarity=0.221  Sum_probs=117.1

Q ss_pred             CCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCc
Q 039564           14 QQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTR   92 (485)
Q Consensus        14 ~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~   92 (485)
                      .+..++.+++..|.+. .+-..+.  .+++|..|++.+|.|..+...   ...+..|++|++++|.|+...+-. +..|+
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~--~~~~l~~l~l~~n~i~~i~~~---l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLS--KLKSLEALDLYDNKIEKIENL---LSSLVNLQVLDLSFNKITKLEGLSTLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhcccc--cccceeeeeccccchhhcccc---hhhhhcchheeccccccccccchhhccchh
Confidence            3455666667777766 3333355  567777777777777765431   233334477777777777655544 66677


Q ss_pred             EEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcE
Q 039564           93 HYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI  172 (485)
Q Consensus        93 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  172 (485)
                      .|++++|.+...  ..+..++.|+.+++++|++...-+ .     . ...+.+++.+++.+|.+.  ....+..+..+..
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~-----~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~  212 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-D-----E-LSELISLEELDLGGNSIR--EIEGLDLLKKLVL  212 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhh-h-----h-hhhccchHHHhccCCchh--cccchHHHHHHHH
Confidence            777777777632  334457777777777777763222 1     0 123467777777777775  2233444555555


Q ss_pred             EEccCCcccCCcChhhhCCC--CCCEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564          173 IDLGNNQIIDTFPAWLGTLS--ELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       173 L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  231 (485)
                      +++..|.++..-+  +..+.  .|+.+++++|.+. .++..+  ..+..+..+++.+|.+.
T Consensus       213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~--~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGL--ENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             hhcccccceeccC--cccchhHHHHHHhcccCccc-cccccc--cccccccccchhhcccc
Confidence            5777776654432  12222  3777777777776 322223  45567777777777665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=1.8e-08  Score=106.75  Aligned_cols=102  Identities=25%  Similarity=0.268  Sum_probs=53.2

Q ss_pred             CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCc--CcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCC
Q 039564           16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNS--LTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTK   90 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~   90 (485)
                      ...+...+-+|.+. .++....   ++.|++|-+..|.  +..+..  .+|..+++|++|||++|.=.+.+|..   +-+
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~~---~~~L~tLll~~n~~~l~~is~--~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSSE---NPKLRTLLLQRNSDWLLEISG--EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             hheeEEEEeccchh-hccCCCC---CCccceEEEeecchhhhhcCH--HHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            45556666666555 4444432   4456666666664  332222  35565666666666665443344433   445


Q ss_pred             CcEEEccCCcccccCChhhcCCCCCCEEEcccCc
Q 039564           91 TRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNN  124 (485)
Q Consensus        91 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~  124 (485)
                      |++|++++..+. .+|..+++++.|.+|++..+.
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheecccccc
Confidence            555555555554 455555555555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=1.4e-08  Score=90.21  Aligned_cols=85  Identities=21%  Similarity=0.272  Sum_probs=50.1

Q ss_pred             CCCCcEEEccCCcccc--cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC-Cccc
Q 039564           88 PTKTRHYLVSKNNLTG--EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI-PKSL  164 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~  164 (485)
                      .+.++++||.+|.|+.  .+-....++|.|++|+++.|++...|-.    ++   ....+|++|-|.+..+.-.- ...+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~----lp---~p~~nl~~lVLNgT~L~w~~~~s~l  142 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS----LP---LPLKNLRVLVLNGTGLSWTQSTSSL  142 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc----Cc---ccccceEEEEEcCCCCChhhhhhhh
Confidence            4555556666665541  2333456788888888888877633321    10   12367788877777765332 2334


Q ss_pred             cCCCCCcEEEccCCc
Q 039564          165 ANCAVLEIIDLGNNQ  179 (485)
Q Consensus       165 ~~l~~L~~L~Ls~n~  179 (485)
                      ..++.++.|.++.|.
T Consensus       143 ~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  143 DDLPKVTELHMSDNS  157 (418)
T ss_pred             hcchhhhhhhhccch
Confidence            566777777777763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=3.6e-09  Score=104.61  Aligned_cols=105  Identities=26%  Similarity=0.280  Sum_probs=66.6

Q ss_pred             cccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCcc-ccCCCCCCEEECCCCcCcccCcccccCCCCCCEE
Q 039564          294 PYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC-FGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFF  372 (485)
Q Consensus       294 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  372 (485)
                      ++.++.|+|++|+++.  ...+..+++|++|||+.|.+. .+|.. ..++ +|+.|++++|.++..  ..+.++++|+.|
T Consensus       186 l~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence            4457778888887762  226677788888888888777 44442 2333 388888888877732  236777888888


Q ss_pred             eccCCcccccCCCC--CCCCCCCCCCCCCCCCCC
Q 039564          373 NVSHNNLTGPIPEA--NQFPTFDSSSFDGNSGLC  404 (485)
Q Consensus       373 ~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc  404 (485)
                      |+++|-+.+.-.-.  ..+..+..+.+.|||.-|
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            88888776532111  122334456677887655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=3.2e-09  Score=104.91  Aligned_cols=128  Identities=26%  Similarity=0.245  Sum_probs=94.0

Q ss_pred             CCCCCccEEEcCCCcccccCCCC--CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccC
Q 039564           65 PWSSGEFTLDLSSNFLQGPIPAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMN  142 (485)
Q Consensus        65 ~~~~lL~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~  142 (485)
                      .+..+ .+.+.++|.+.......  ++.++.|+|++|+++..  +.+..+++|+.|||++|.+. .+|. ++.     .+
T Consensus       162 ~Wn~L-~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~-l~~-----~g  231 (1096)
T KOG1859|consen  162 VWNKL-ATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ-LSM-----VG  231 (1096)
T ss_pred             hhhhH-hhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc-cch-----hh
Confidence            34444 66777777766332222  78899999999999843  37788999999999999998 6663 211     11


Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccc
Q 039564          143 GSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       143 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  205 (485)
                       ..|+.|.+++|.++..  ..+.++.+|+.||+++|-+.+..- ..+..+..|+.|+|.||.+.
T Consensus       232 -c~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  232 -CKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             -hhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence             3499999999998732  467889999999999998865422 23556788999999999875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.7e-08  Score=89.72  Aligned_cols=179  Identities=22%  Similarity=0.219  Sum_probs=95.7

Q ss_pred             CCcEEEccCCcccCC-cChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc-CCccCChhhhcccccce
Q 039564          169 VLEIIDLGNNQIIDT-FPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS-FTGNLPSKYFQCWNAMK  246 (485)
Q Consensus       169 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~  246 (485)
                      .|++|||++..|+.. +...+..+.+|+.|.+.++.+.+.+...+  ..-.+|+.|+++.++ ++..--.-.+.+++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            466666666555421 22334455666666666666655554444  344566666666532 33222223344455555


Q ss_pred             eccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCc--C-cccCchhhccCCCCCE
Q 039564          247 FVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNG--F-HGEIPTSIANLKGLQV  323 (485)
Q Consensus       247 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l-~~~~p~~~~~l~~L~~  323 (485)
                      .++++-+.....                          .......+..+.++.|++++..  + ...+..-...+++|.+
T Consensus       264 ~LNlsWc~l~~~--------------------------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~  317 (419)
T KOG2120|consen  264 ELNLSWCFLFTE--------------------------KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH  317 (419)
T ss_pred             hcCchHhhccch--------------------------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence            444332111100                          0011112234457777777643  1 1123333456888999


Q ss_pred             EeCcCce-ecccCCccccCCCCCCEEECCCCcCcccCcc---cccCCCCCCEEeccCC
Q 039564          324 LSLANNN-LEGHIPSCFGDLTKLESLDLSNNWFSGQIPQ---QLTGLTFLEFFNVSHN  377 (485)
Q Consensus       324 L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~l~~N  377 (485)
                      ||||+|. ++...-.+|..++.|++|.++.|...  +|.   .+...|+|.+|++.++
T Consensus       318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            9998874 33333345667888899888888643  343   3566788888888765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=7e-08  Score=84.81  Aligned_cols=243  Identities=18%  Similarity=0.170  Sum_probs=135.9

Q ss_pred             CCCCcEEEccCCcccccCChh----hcCCCCCCEEEcccCcc---cccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564           88 PTKTRHYLVSKNNLTGEIPSW----ICNLSSLYILDLSDNNL---SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI  160 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~  160 (485)
                      +..+.+++|++|-|......+    +.+-.+|++.+++.-..   ...+|+.+.-+..++.+++.|++.+||+|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            566777777777776543333    44556777777776422   22344444444456667788888888888887655


Q ss_pred             Ccc----ccCCCCCcEEEccCCcccCCcChhhh-------------CCCCCCEEEeeccccccccCCcccc---CCCCCc
Q 039564          161 PKS----LANCAVLEIIDLGNNQIIDTFPAWLG-------------TLSELDILVLQSNNFHGEIKEHKME---CGFPKL  220 (485)
Q Consensus       161 ~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~-------------~l~~L~~L~L~~n~l~~~~~~~~~~---~~l~~L  220 (485)
                      |..    ++.-+.|++|.+++|.+.-.-...++             .-|.|+......|++..- +.....   ..-.+|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-s~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-SKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-cHHHHHHHHHhhcCc
Confidence            543    34567788888888866322111121             235666666666665421 111100   112356


Q ss_pred             cEEEccCccCCccCChh-hhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccE
Q 039564          221 RIVDLSNNSFTGNLPSK-YFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA  299 (485)
Q Consensus       221 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~  299 (485)
                      +.+.+.+|.|...--.. .+-.+                                                 ....+|+.
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl-------------------------------------------------~y~~~Lev  218 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGL-------------------------------------------------FYSHSLEV  218 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHH-------------------------------------------------HHhCccee
Confidence            66666666655210000 00000                                                 01334778


Q ss_pred             EEcCCCcCccc----CchhhccCCCCCEEeCcCceecccCCccc------cCCCCCCEEECCCCcCcccCc-ccc-----
Q 039564          300 VILSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGHIPSCF------GDLTKLESLDLSNNWFSGQIP-QQL-----  363 (485)
Q Consensus       300 L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~Ls~N~l~~~~p-~~~-----  363 (485)
                      |||..|-++-.    +...+...+.|+.|.+..|-++..-...+      ...++|..|-..+|.+.+.+- ..+     
T Consensus       219 LDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e  298 (388)
T COG5238         219 LDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE  298 (388)
T ss_pred             eeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh
Confidence            88888877632    22334455668888888887764333222      135677888888887654321 211     


Q ss_pred             -cCCCCCCEEeccCCccc
Q 039564          364 -TGLTFLEFFNVSHNNLT  380 (485)
Q Consensus       364 -~~l~~L~~L~l~~N~l~  380 (485)
                       ..+|-|..+.+.+|++.
T Consensus       299 ~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         299 QDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hcccHHHHHHHHccCcch
Confidence             34666777777777775

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.10  E-value=3e-07  Score=80.92  Aligned_cols=216  Identities=21%  Similarity=0.177  Sum_probs=136.9

Q ss_pred             hhCCCCCCEEECCCCcCCCCCCccccc--CCCCCCcEEEccCCcCcCcCCC----------CCCCCCCCCccEEEcCCCc
Q 039564           12 LKQQKHLKALDLSSNKLHGNIPKWLLN--PSMQNFSYLNLSKNSLTGFDQH----------PSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus        12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~--~~l~~L~~L~Ls~n~l~~~~~~----------~~~~~~~~lL~~L~l~~n~   79 (485)
                      +..+..+..+|||+|.|......+++.  ..-++|+..+++.-. +|...+          +.+.+++.+ +..+||.|.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l-~~v~LSDNA  103 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRL-QKVDLSDNA  103 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcc-eeeeccccc
Confidence            345788899999999998665555441  033667777777543 221110          113344444 999999998


Q ss_pred             ccccCCCC-------CCCCcEEEccCCcccccCChh-------------hcCCCCCCEEEcccCcccccCCCccccCccc
Q 039564           80 LQGPIPAP-------PTKTRHYLVSKNNLTGEIPSW-------------ICNLSSLYILDLSDNNLSGELPRCLGNFSDT  139 (485)
Q Consensus        80 l~~~~~~~-------~~~L~~L~l~~n~l~~~~p~~-------------~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~  139 (485)
                      +....|..       -+.|.+|.+.+|.+....-..             ..+-|.|++.....|++. ..|.....  ..
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a--~~  180 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSA--AL  180 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHH--HH
Confidence            88666553       678999999999775322211             234578899999999887 55543322  23


Q ss_pred             ccCCCCccEEEccCCccccc-----CCccccCCCCCcEEEccCCcccCCc----ChhhhCCCCCCEEEeeccccccccCC
Q 039564          140 FMNGSNLGIIDMSHNLLQGR-----IPKSLANCAVLEIIDLGNNQIIDTF----PAWLGTLSELDILVLQSNNFHGEIKE  210 (485)
Q Consensus       140 ~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~  210 (485)
                      +..-..|+++.+..|.|...     +-..+..+.+|+.||+.+|.++..-    ..++...+.|+.|.+..|-++..-..
T Consensus       181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~  260 (388)
T COG5238         181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK  260 (388)
T ss_pred             HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence            33346788888888887632     1123456788999999998876432    23445667788888888876633222


Q ss_pred             c----cccCCCCCccEEEccCccCCc
Q 039564          211 H----KMECGFPKLRIVDLSNNSFTG  232 (485)
Q Consensus       211 ~----~~~~~l~~L~~L~l~~n~l~~  232 (485)
                      .    +.....|+|..|-..+|...+
T Consensus       261 ~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         261 SVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HHHHHhhhhcCCCccccccchhhhcC
Confidence            1    111245777777777776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=2.3e-06  Score=54.52  Aligned_cols=40  Identities=38%  Similarity=0.628  Sum_probs=32.6

Q ss_pred             CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcC
Q 039564           16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFD   58 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~   58 (485)
                      ++|++|++++|+|+ .+|..++  .|++|++|++++|.|+.+.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~--~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELS--NLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGT--TCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCc-ccCchHh--CCCCCCEEEecCCCCCCCc
Confidence            57899999999999 6777788  8999999999999988653

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=1.1e-06  Score=78.37  Aligned_cols=81  Identities=16%  Similarity=0.200  Sum_probs=40.8

Q ss_pred             CCccEEEccCCcccccC-CccccCCCCCcEEEccCCcccCCc-ChhhhCCCCCCEEEeeccccccccCC----ccccCCC
Q 039564          144 SNLGIIDMSHNLLQGRI-PKSLANCAVLEIIDLGNNQIIDTF-PAWLGTLSELDILVLQSNNFHGEIKE----HKMECGF  217 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~l  217 (485)
                      +++..+-+..|.+.... ...+...+.+..|+|+.|.|.... .+++.+++.|..|.+.++.+...+..    ....+++
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            44555555555444221 223444555556666666664332 23455666666666666665533221    1222455


Q ss_pred             CCccEEE
Q 039564          218 PKLRIVD  224 (485)
Q Consensus       218 ~~L~~L~  224 (485)
                      ++++.|+
T Consensus       279 ~~v~vLN  285 (418)
T KOG2982|consen  279 TKVQVLN  285 (418)
T ss_pred             cceEEec
Confidence            5555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.3e-07  Score=84.27  Aligned_cols=59  Identities=22%  Similarity=0.109  Sum_probs=45.0

Q ss_pred             cccccEEEcCCCc-CcccCchhhccCCCCCEEeCcCceecccCCcc---ccCCCCCCEEECCCCc
Q 039564          294 PYILTAVILSSNG-FHGEIPTSIANLKGLQVLSLANNNLEGHIPSC---FGDLTKLESLDLSNNW  354 (485)
Q Consensus       294 ~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~  354 (485)
                      .+++..|||++|. ++...-..|.+++.|++|.++.|..  ++|..   +...++|.+||+-++-
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            5679999999876 4433445577899999999999974  45553   5788999999987763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=2.3e-07  Score=73.16  Aligned_cols=81  Identities=28%  Similarity=0.461  Sum_probs=44.0

Q ss_pred             ccEEEcCCCcCcccCchhhcc-CCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564          297 LTAVILSSNGFHGEIPTSIAN-LKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS  375 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  375 (485)
                      |+..+|++|.+. ..|..|.. .+.+++|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|+..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            444555555554 33333332 345556666666665 55555666666666666666665 444445445555556665


Q ss_pred             CCccc
Q 039564          376 HNNLT  380 (485)
Q Consensus       376 ~N~l~  380 (485)
                      +|..-
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.05  E-value=1.2e-05  Score=68.09  Aligned_cols=14  Identities=36%  Similarity=0.525  Sum_probs=5.9

Q ss_pred             CCCCCEEEcccCcc
Q 039564          112 LSSLYILDLSDNNL  125 (485)
Q Consensus       112 l~~L~~L~L~~n~l  125 (485)
                      +++|+.|.|.+|.+
T Consensus        87 ~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   87 LPNLKTLILTNNSI  100 (233)
T ss_pred             ccccceEEecCcch
Confidence            33444444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=5e-06  Score=52.94  Aligned_cols=35  Identities=43%  Similarity=0.661  Sum_probs=14.4

Q ss_pred             CCEEeCcCceecccCCccccCCCCCCEEECCCCcCc
Q 039564          321 LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS  356 (485)
Q Consensus       321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  356 (485)
                      |++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 23333444444444444444444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.91  E-value=8.1e-07  Score=70.12  Aligned_cols=83  Identities=27%  Similarity=0.377  Sum_probs=59.7

Q ss_pred             ccEEEcCCCcCcccCchh---hccCCCCCEEeCcCceecccCCccccC-CCCCCEEECCCCcCcccCcccccCCCCCCEE
Q 039564          297 LTAVILSSNGFHGEIPTS---IANLKGLQVLSLANNNLEGHIPSCFGD-LTKLESLDLSNNWFSGQIPQQLTGLTFLEFF  372 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  372 (485)
                      +..++|+.+.+. .+++.   +....+|...+|++|.+. ..|..|.. .+.++.|++++|+|+ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            556777777665 34333   334556667788888887 55555544 457888888888888 777778888888888


Q ss_pred             eccCCccccc
Q 039564          373 NVSHNNLTGP  382 (485)
Q Consensus       373 ~l~~N~l~~~  382 (485)
                      +++.|++...
T Consensus       106 Nl~~N~l~~~  115 (177)
T KOG4579|consen  106 NLRFNPLNAE  115 (177)
T ss_pred             ccccCccccc
Confidence            8888888743

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=6.7e-05  Score=71.96  Aligned_cols=57  Identities=19%  Similarity=0.198  Sum_probs=33.8

Q ss_pred             hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCC
Q 039564          109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNN  178 (485)
Q Consensus       109 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  178 (485)
                      +..+.+++.|++++|.++ .+|.    +      ..+|++|.++++.-...+|+.+.  ++|++|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~----L------P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV----L------PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC----C------CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            445677778888877666 5552    1      14577777776443334554432  45666666666

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.84  E-value=3e-05  Score=65.71  Aligned_cols=129  Identities=18%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             CCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEE
Q 039564           18 LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHY   94 (485)
Q Consensus        18 L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L   94 (485)
                      =+.++|.+.++. .+-. ++. .......+||++|.+...    ..+..+..|.+|.+++|.|+.+.|..   +++|..|
T Consensus        21 e~e~~LR~lkip-~ien-lg~-~~d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L   93 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIEN-LGA-TLDQFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL   93 (233)
T ss_pred             cccccccccccc-chhh-ccc-cccccceecccccchhhc----ccCCCccccceEEecCCcceeeccchhhhccccceE
Confidence            455677766654 2221 331 346788899999988765    23455555599999999998877765   7889999


Q ss_pred             EccCCcccccC-ChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564           95 LVSKNNLTGEI-PSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ  157 (485)
Q Consensus        95 ~l~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~  157 (485)
                      .+.+|++.... -.-+..++.|++|.+-+|.++ .-+..  .+ ..+..+++|++||++.-.-.
T Consensus        94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~Y--R~-yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen   94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNY--RL-YVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             EecCcchhhhhhcchhccCCccceeeecCCchh-cccCc--ee-EEEEecCcceEeehhhhhHH
Confidence            99999887321 123567889999999999877 22210  00 34556799999999876544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.77  E-value=0.00011  Score=70.56  Aligned_cols=135  Identities=15%  Similarity=0.222  Sum_probs=88.6

Q ss_pred             hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCC-cCcCcCCCCCCCCCCCCccEEEcCCC-cccccCCCCCC
Q 039564           12 LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN-SLTGFDQHPSVFPWSSGEFTLDLSSN-FLQGPIPAPPT   89 (485)
Q Consensus        12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~lL~~L~l~~n-~l~~~~~~~~~   89 (485)
                      +..+.+++.|++++|.+. .+| .+    -.+|+.|.++++ .++. .|.  .  +...|+.|++++| .+.    ..+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP-~L----P~sLtsL~Lsnc~nLts-LP~--~--LP~nLe~L~Ls~Cs~L~----sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP-VL----PNELTEITIENCNNLTT-LPG--S--IPEGLEKLTVCHCPEIS----GLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC-CC----CCCCcEEEccCCCCccc-CCc--h--hhhhhhheEccCccccc----cccc
Confidence            445899999999999888 667 23    257999999985 4443 332  2  2445699999998 443    3356


Q ss_pred             CCcEEEccCCcccc--cCChhhcCCCCCCEEEcccCccc--ccCCCccccCcccccCCCCccEEEccCCcccccCCcccc
Q 039564           90 KTRHYLVSKNNLTG--EIPSWICNLSSLYILDLSDNNLS--GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA  165 (485)
Q Consensus        90 ~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  165 (485)
                      .|+.|++..+....  .+|.      +|+.|.+.+++..  ..+|..   +      -++|++|++++|... ..|..+.
T Consensus       113 sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~---L------PsSLk~L~Is~c~~i-~LP~~LP  176 (426)
T PRK15386        113 SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL---I------SPSLKTLSLTGCSNI-ILPEKLP  176 (426)
T ss_pred             ccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc---c------CCcccEEEecCCCcc-cCccccc
Confidence            78888887765531  2333      4667776543211  011211   1      168999999999876 4555444


Q ss_pred             CCCCCcEEEccCCc
Q 039564          166 NCAVLEIIDLGNNQ  179 (485)
Q Consensus       166 ~l~~L~~L~Ls~n~  179 (485)
                        .+|++|+++.+.
T Consensus       177 --~SLk~L~ls~n~  188 (426)
T PRK15386        177 --ESLQSITLHIEQ  188 (426)
T ss_pred             --ccCcEEEecccc
Confidence              589999998763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=1.8e-05  Score=82.16  Aligned_cols=111  Identities=17%  Similarity=0.151  Sum_probs=51.9

Q ss_pred             CCCCCCccEEEcCCCccccc----CCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCccc
Q 039564           64 FPWSSGEFTLDLSSNFLQGP----IPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDT  139 (485)
Q Consensus        64 ~~~~~lL~~L~l~~n~l~~~----~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~  139 (485)
                      ...++.|+.|.+++-.+...    .-..+++|..||+++.+++..  ..++.+++|++|.+.+=.+.. -. .+    ..
T Consensus       144 g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~-~~-~l----~~  215 (699)
T KOG3665|consen  144 GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFES-YQ-DL----ID  215 (699)
T ss_pred             hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCc-hh-hH----HH
Confidence            33344445555555433221    112255666666666655532  445556666666555443331 00 00    11


Q ss_pred             ccCCCCccEEEccCCcccccC------CccccCCCCCcEEEccCCcccC
Q 039564          140 FMNGSNLGIIDMSHNLLQGRI------PKSLANCAVLEIIDLGNNQIID  182 (485)
Q Consensus       140 ~~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~~  182 (485)
                      +..+++|+.||+|........      -+.-..+|.|+.||.|++.+..
T Consensus       216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            223466666666654443211      0111246667777777665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.19  E-value=0.00018  Score=74.93  Aligned_cols=77  Identities=22%  Similarity=0.462  Sum_probs=44.6

Q ss_pred             CCCcEEEccCCcccCC-cChhhh-CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccc
Q 039564          168 AVLEIIDLGNNQIIDT-FPAWLG-TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAM  245 (485)
Q Consensus       168 ~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  245 (485)
                      .+|++||+++...... -|..++ -+|+|+.|.+.+-.+...--.. ....+|+|..||+|+.+++ .+  ...+.+++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNIS-NL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCCCcc-Cc--HHHhccccH
Confidence            5688888888544211 112222 5788888888886664221111 1156788888888888876 33  224444444


Q ss_pred             eec
Q 039564          246 KFV  248 (485)
Q Consensus       246 ~~l  248 (485)
                      +.|
T Consensus       198 q~L  200 (699)
T KOG3665|consen  198 QVL  200 (699)
T ss_pred             HHH
Confidence            443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.18  E-value=0.0016  Score=52.91  Aligned_cols=123  Identities=19%  Similarity=0.316  Sum_probs=51.8

Q ss_pred             hhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcCh
Q 039564          107 SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA  186 (485)
Q Consensus       107 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  186 (485)
                      .+|.++.+|+.+.+.. .+. .++.      ..|..+.+|+.+.+.++ +.......|.++++++.+.+.+ .+......
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~------~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~   75 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGE------NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDN   75 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-T------TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeCh------hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccc
Confidence            4566666677766653 343 3332      44555566777777664 5434445566666677777754 33333445


Q ss_pred             hhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccc
Q 039564          187 WLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAM  245 (485)
Q Consensus       187 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  245 (485)
                      .|..+++|+.+.+..+ +. .++...+ ... +++.+.+.. .+. .++...|.++.+|
T Consensus        76 ~F~~~~~l~~i~~~~~-~~-~i~~~~f-~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   76 AFSNCTNLKNIDIPSN-IT-EIGSSSF-SNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TTTT-TTECEEEETTT--B-EEHTTTT-TT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             cccccccccccccCcc-cc-EEchhhh-cCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            5666777777777554 33 2222221 344 666676654 333 4455555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=2.9e-05  Score=68.94  Aligned_cols=85  Identities=26%  Similarity=0.200  Sum_probs=47.0

Q ss_pred             CCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCcEEEccCCcccccC-ChhhcCCCCCCEEE
Q 039564           42 QNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEI-PSWICNLSSLYILD  119 (485)
Q Consensus        42 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~  119 (485)
                      .+.+.|++.++.++.+    ++..-++.|++|.|+-|+|+...|-. +++|++|+|..|.|.+.. -..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3455566666665543    34444444466666666665444433 666666666666665321 12345667777777


Q ss_pred             cccCcccccCC
Q 039564          120 LSDNNLSGELP  130 (485)
Q Consensus       120 L~~n~l~~~~p  130 (485)
                      |..|.-.|..+
T Consensus        95 L~ENPCc~~ag  105 (388)
T KOG2123|consen   95 LDENPCCGEAG  105 (388)
T ss_pred             hccCCcccccc
Confidence            77766554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.77  E-value=0.0045  Score=50.18  Aligned_cols=102  Identities=19%  Similarity=0.248  Sum_probs=49.5

Q ss_pred             CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCC
Q 039564           88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC  167 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  167 (485)
                      +.+|+.+.+.. .+.......|.++++|+.+.+..+ +. .++.      .+|..+++++.+.+.+ .+.......|..+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~------~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGD------NAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-T------TTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccce------eeeecccccccccccc-ccccccccccccc
Confidence            33455555543 344344556777777777777664 44 3332      4455666777777765 4433444566667


Q ss_pred             CCCcEEEccCCcccCCcChhhhCCCCCCEEEeec
Q 039564          168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQS  201 (485)
Q Consensus       168 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  201 (485)
                      ++|+.+++..+ +.......|... +|+.+.+..
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            77777777654 444555566665 777777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.67  E-value=0.0011  Score=58.94  Aligned_cols=55  Identities=22%  Similarity=0.190  Sum_probs=27.1

Q ss_pred             CCccEEEccCCcccccCCcc---ccCCCCCcEEEccCCcccCCcC---hhhhCCCCCCEEEee
Q 039564          144 SNLGIIDMSHNLLQGRIPKS---LANCAVLEIIDLGNNQIIDTFP---AWLGTLSELDILVLQ  200 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~  200 (485)
                      ++|++|++++|+|..  +++   +..+.+|..|++.+|..+...-   ..|.-+++|++|+-.
T Consensus        91 P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             CceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            555555555555542  222   2344455566666655443211   234456666666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=7.3e-05  Score=66.47  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=53.4

Q ss_pred             CCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhC
Q 039564          112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGT  190 (485)
Q Consensus       112 l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~  190 (485)
                      +.+.+.|+.-++.+.+.         .....++.|++|.|+-|+|+..  ..|..+++|++|+|..|.|....- ..+.+
T Consensus        18 l~~vkKLNcwg~~L~DI---------sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLkn   86 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---------SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKN   86 (388)
T ss_pred             HHHhhhhcccCCCccHH---------HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence            34455566666665521         1223456666666666666522  235566666666666666643321 23445


Q ss_pred             CCCCCEEEeeccccccccCCcc---ccCCCCCccEEE
Q 039564          191 LSELDILVLQSNNFHGEIKEHK---MECGFPKLRIVD  224 (485)
Q Consensus       191 l~~L~~L~L~~n~l~~~~~~~~---~~~~l~~L~~L~  224 (485)
                      +++|+.|.|..|.-.+.-+...   ....+|+|+.||
T Consensus        87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666666666666554443321   002355555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.39  E-value=0.0021  Score=57.07  Aligned_cols=39  Identities=21%  Similarity=0.341  Sum_probs=21.3

Q ss_pred             CCCccEEEccCC--cccccCCccccCCCCCcEEEccCCccc
Q 039564          143 GSNLGIIDMSHN--LLQGRIPKSLANCAVLEIIDLGNNQII  181 (485)
Q Consensus       143 l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~  181 (485)
                      +++|++|.++.|  ++.+.++.....+++|++|++++|++.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            456666666666  444444444444466666666666553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.0048  Score=32.54  Aligned_cols=12  Identities=50%  Similarity=0.725  Sum_probs=5.2

Q ss_pred             CCEEeCcCceec
Q 039564          321 LQVLSLANNNLE  332 (485)
Q Consensus       321 L~~L~Ls~N~l~  332 (485)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.62  E-value=0.0047  Score=32.59  Aligned_cols=21  Identities=43%  Similarity=0.661  Sum_probs=14.6

Q ss_pred             CCCEEECCCCcCcccCcccccC
Q 039564          344 KLESLDLSNNWFSGQIPQQLTG  365 (485)
Q Consensus       344 ~L~~L~Ls~N~l~~~~p~~~~~  365 (485)
                      +|++||+++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677888888777 66665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.44  E-value=0.00049  Score=64.87  Aligned_cols=62  Identities=27%  Similarity=0.201  Sum_probs=33.1

Q ss_pred             cCCCCCEEeCcCceecccC-----CccccCCCCCCEEECCCCcCc-ccCcccccCCCCCCEEeccCCc
Q 039564          317 NLKGLQVLSLANNNLEGHI-----PSCFGDLTKLESLDLSNNWFS-GQIPQQLTGLTFLEFFNVSHNN  378 (485)
Q Consensus       317 ~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~  378 (485)
                      +++.|+.|.|+++......     ...-..+..|+.+.|+++..+ ...-..+..++.|+.+++-+++
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            4566777777766432111     111234556677777777443 2233445556666666665554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.29  E-value=0.00049  Score=64.84  Aligned_cols=78  Identities=24%  Similarity=0.211  Sum_probs=44.3

Q ss_pred             cccccEEEcCCCcCc-cc----CchhhccCCCCCEEeCcCceec-ccCCccccCCCCCCEEECCCCcCccc--CcccccC
Q 039564          294 PYILTAVILSSNGFH-GE----IPTSIANLKGLQVLSLANNNLE-GHIPSCFGDLTKLESLDLSNNWFSGQ--IPQQLTG  365 (485)
Q Consensus       294 ~~~L~~L~Ls~n~l~-~~----~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~  365 (485)
                      .+.++.+.++++... ++    ....-..+..|+.+.|+++... ...-..+...++|+.+++-.++-...  +...-.+
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence            344666666665532 11    1122235677888888888653 23334566778888888888854322  2222345


Q ss_pred             CCCCCE
Q 039564          366 LTFLEF  371 (485)
Q Consensus       366 l~~L~~  371 (485)
                      +|++++
T Consensus       451 lp~i~v  456 (483)
T KOG4341|consen  451 LPNIKV  456 (483)
T ss_pred             Ccccee
Confidence            665554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.46  E-value=0.044  Score=26.73  Aligned_cols=13  Identities=54%  Similarity=0.692  Sum_probs=5.3

Q ss_pred             CCcEEEccCCcCc
Q 039564           43 NFSYLNLSKNSLT   55 (485)
Q Consensus        43 ~L~~L~Ls~n~l~   55 (485)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.95  E-value=0.00057  Score=68.14  Aligned_cols=87  Identities=23%  Similarity=0.221  Sum_probs=39.3

Q ss_pred             CcEEEccCCcccccCC----hhhcCCCCCCEEEcccCcccccCCCccccCcccccCC-CCccEEEccCCccccc----CC
Q 039564           91 TRHYLVSKNNLTGEIP----SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNG-SNLGIIDMSHNLLQGR----IP  161 (485)
Q Consensus        91 L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l-~~L~~L~Ls~n~i~~~----~~  161 (485)
                      +..|.+.+|.+.....    ..+...+.|+.|++++|.+.+.   ....+...+... ..+++|++..|.++..    +.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~---g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~  165 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE---GARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA  165 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH---hHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence            4555555555543222    2334455566666666655421   111111222222 3455555555555432    22


Q ss_pred             ccccCCCCCcEEEccCCcc
Q 039564          162 KSLANCAVLEIIDLGNNQI  180 (485)
Q Consensus       162 ~~~~~l~~L~~L~Ls~n~l  180 (485)
                      +.+.....++.++++.|.+
T Consensus       166 ~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  166 AVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHHhcccchhHHHHHhccc
Confidence            3333445555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.13  E-value=0.0062  Score=53.11  Aligned_cols=83  Identities=18%  Similarity=0.137  Sum_probs=69.8

Q ss_pred             ccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEec
Q 039564          295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV  374 (485)
Q Consensus       295 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  374 (485)
                      ...+.||++.|++. .....|.-++.+..||++.|++. ..|..++++..+..+++..|..+ ..|.++...+.++.+++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            44788999998876 44555666788889999999988 78888999899999999999888 78889999999999999


Q ss_pred             cCCccc
Q 039564          375 SHNNLT  380 (485)
Q Consensus       375 ~~N~l~  380 (485)
                      -+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            998875

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=90.92  E-value=0.78  Score=44.68  Aligned_cols=15  Identities=13%  Similarity=0.321  Sum_probs=8.6

Q ss_pred             ccEEEccCccCCccC
Q 039564          220 LRIVDLSNNSFTGNL  234 (485)
Q Consensus       220 L~~L~l~~n~l~~~~  234 (485)
                      ++++.+..|.+.+..
T Consensus       356 ~q~l~~rdnnldgeg  370 (553)
T KOG4242|consen  356 VQVLLQRDNNLDGEG  370 (553)
T ss_pred             eeEeecccccccccc
Confidence            566666666655433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.90  E-value=0.21  Score=27.37  Aligned_cols=14  Identities=57%  Similarity=0.703  Sum_probs=8.0

Q ss_pred             CCCCEEECCCCcCc
Q 039564          343 TKLESLDLSNNWFS  356 (485)
Q Consensus       343 ~~L~~L~Ls~N~l~  356 (485)
                      ++|+.|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.90  E-value=0.21  Score=27.37  Aligned_cols=14  Identities=57%  Similarity=0.703  Sum_probs=8.0

Q ss_pred             CCCCEEECCCCcCc
Q 039564          343 TKLESLDLSNNWFS  356 (485)
Q Consensus       343 ~~L~~L~Ls~N~l~  356 (485)
                      ++|+.|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.34  E-value=0.24  Score=27.10  Aligned_cols=15  Identities=40%  Similarity=0.488  Sum_probs=6.9

Q ss_pred             CCcEEEccCCcccCC
Q 039564          169 VLEIIDLGNNQIIDT  183 (485)
Q Consensus       169 ~L~~L~Ls~n~l~~~  183 (485)
                      +|++|+|++|.+...
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00370        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            444444444444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.34  E-value=0.24  Score=27.10  Aligned_cols=15  Identities=40%  Similarity=0.488  Sum_probs=6.9

Q ss_pred             CCcEEEccCCcccCC
Q 039564          169 VLEIIDLGNNQIIDT  183 (485)
Q Consensus       169 ~L~~L~Ls~n~l~~~  183 (485)
                      +|++|+|++|.+...
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00369        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            444444444444433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.78  E-value=0.0023  Score=63.89  Aligned_cols=82  Identities=26%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             CCEEECCCCcCCCCCCc----ccccCCCCCCcEEEccCCcCcCcCCC--CCCCCC-CCCccEEEcCCCcccccCCCC---
Q 039564           18 LKALDLSSNKLHGNIPK----WLLNPSMQNFSYLNLSKNSLTGFDQH--PSVFPW-SSGEFTLDLSSNFLQGPIPAP---   87 (485)
Q Consensus        18 L~~L~Ls~n~~~~~~p~----~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~-~~lL~~L~l~~n~l~~~~~~~---   87 (485)
                      +..|.|.+|.+.+....    .+.  ...+|+.|++++|.+....-.  -..... ...+++|++..|.+++.....   
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~--t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALK--TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhc--ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            77788888888755443    333  567888899998888731100  001112 133466777777776433221   


Q ss_pred             ----CCCCcEEEccCCcc
Q 039564           88 ----PTKTRHYLVSKNNL  101 (485)
Q Consensus        88 ----~~~L~~L~l~~n~l  101 (485)
                          ...++.++++.|.+
T Consensus       167 ~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHhcccchhHHHHHhccc
Confidence                44455555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.07  E-value=0.094  Score=53.15  Aligned_cols=113  Identities=26%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             CCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC-cccccCC----ccccCCCCCcEEEccCCc-ccCCcC
Q 039564          112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN-LLQGRIP----KSLANCAVLEIIDLGNNQ-IIDTFP  185 (485)
Q Consensus       112 l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n-~i~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~  185 (485)
                      ++.|+.|.+..+.-.....  +.   ......+.|++|+++++ ......+    .....+++|+.|+++++. +++..-
T Consensus       187 ~~~L~~l~l~~~~~~~~~~--~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDS--LD---ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             CchhhHhhhcccccCChhh--HH---HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            4566666666553211100  10   12234567777777663 1111111    123345677777777766 444433


Q ss_pred             hhhhC-CCCCCEEEeeccc-cccccCCccccCCCCCccEEEccCccC
Q 039564          186 AWLGT-LSELDILVLQSNN-FHGEIKEHKMECGFPKLRIVDLSNNSF  230 (485)
Q Consensus       186 ~~~~~-l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l  230 (485)
                      .++.. +++|++|.+.++. ++..--.. ....+++|++|+++.+..
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCcc
Confidence            33333 6677777766555 33211111 114566777777776553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.65  E-value=0.19  Score=43.17  Aligned_cols=87  Identities=17%  Similarity=0.206  Sum_probs=36.8

Q ss_pred             CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc-CCccCChhhhcccccceec
Q 039564          170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS-FTGNLPSKYFQCWNAMKFV  248 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l  248 (485)
                      ++.+|-++..|...--..+..++.++.|.+.++.--+...-.......++|+.|++++|. |+ +-.-.++..+++|+.+
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHHH
Confidence            444444444444333333444444444444444322221111111233556666666443 33 3333344455555555


Q ss_pred             cccchhhhh
Q 039564          249 NASQLRYMR  257 (485)
Q Consensus       249 ~~~~~~~~~  257 (485)
                      .+..+.++.
T Consensus       182 ~l~~l~~v~  190 (221)
T KOG3864|consen  182 HLYDLPYVA  190 (221)
T ss_pred             HhcCchhhh
Confidence            555444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.51  E-value=0.16  Score=27.27  Aligned_cols=13  Identities=38%  Similarity=0.685  Sum_probs=5.2

Q ss_pred             CCCEEeCcCceec
Q 039564          320 GLQVLSLANNNLE  332 (485)
Q Consensus       320 ~L~~L~Ls~N~l~  332 (485)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.21  E-value=0.16  Score=43.74  Aligned_cols=82  Identities=23%  Similarity=0.153  Sum_probs=60.3

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceeccc--CCccccCCCCCCEEECCCC-cCcccCcccccCCCCCCEEe
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGH--IPSCFGDLTKLESLDLSNN-WFSGQIPQQLTGLTFLEFFN  373 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~  373 (485)
                      ++.+|-++..|..+--+-+..++.++.|.+.++.-.+.  +...-+..++|+.|++++| +|+...-.++..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            78888899888877777788888889998888853211  0000124578999999988 78877677888888888887


Q ss_pred             ccCCc
Q 039564          374 VSHNN  378 (485)
Q Consensus       374 l~~N~  378 (485)
                      +.+=+
T Consensus       183 l~~l~  187 (221)
T KOG3864|consen  183 LYDLP  187 (221)
T ss_pred             hcCch
Confidence            76543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.12  E-value=1.5  Score=24.13  Aligned_cols=16  Identities=31%  Similarity=0.499  Sum_probs=8.8

Q ss_pred             CCCcEEEccCCcCcCc
Q 039564           42 QNFSYLNLSKNSLTGF   57 (485)
Q Consensus        42 ~~L~~L~Ls~n~l~~~   57 (485)
                      .+|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3555566666655543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=81.08  E-value=0.58  Score=47.34  Aligned_cols=115  Identities=20%  Similarity=0.068  Sum_probs=73.3

Q ss_pred             CCCCcEEEccCCccccc--CChhhcCCCCCCEEEcccC-cccccCCCccccCcccccCCCCccEEEccCCc-ccccCCcc
Q 039564           88 PTKTRHYLVSKNNLTGE--IPSWICNLSSLYILDLSDN-NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL-LQGRIPKS  163 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~-i~~~~~~~  163 (485)
                      .+.|+.|.+.++.-...  .-.....++.|+.|+++++ ......+....   .....+++|+.|+++.+. +++..-..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL---LLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh---hhhhhcCCcCccchhhhhccCchhHHH
Confidence            57788888877744433  2345667899999999873 22112221111   122345889999999988 55443334


Q ss_pred             cc-CCCCCcEEEccCCc-ccCCcCh-hhhCCCCCCEEEeeccccc
Q 039564          164 LA-NCAVLEIIDLGNNQ-IIDTFPA-WLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       164 ~~-~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~  205 (485)
                      +. .+++|++|.+.++. +++..-. ....+++|++|+++++...
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            43 37899999988776 4433222 2346788999999988764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.92  E-value=0.047  Score=47.84  Aligned_cols=89  Identities=24%  Similarity=0.213  Sum_probs=68.2

Q ss_pred             chhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCC
Q 039564          312 PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPT  391 (485)
Q Consensus       312 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~  391 (485)
                      ...+......+.||++.|++. ..-..|+-++.|..||++.|++. ..|..+.+...+..+++..|..+...-...+.+.
T Consensus        35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~  112 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH  112 (326)
T ss_pred             hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence            345667788999999999887 45566788899999999999999 7888899888899999988887643333345555


Q ss_pred             CCCCCCCCCCC
Q 039564          392 FDSSSFDGNSG  402 (485)
Q Consensus       392 l~~~~~~~n~~  402 (485)
                      ....+..++|+
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            55666666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	485
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-41
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-41
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-16

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 195/449 (43%), Gaps = 68/449 (15%)
Query: 26  NKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI- 84
           N   G +P   L   M+    L+LS N  +G +   S+   S+   TLDLSSN   GPI 
Sbjct: 328 NNFSGELPMDTL-LKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 85  ----PAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS--- 137
                 P    +   +  N  TG+IP  + N S L  L LS N LSG +P  LG+ S   
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 138 --------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDT 183
                            M    L  + +  N L G IP  L+NC  L  I L NN++   
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 184 FPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWN 243
            P W+G L  L IL L +N+F G I     +C    L  +DL+ N F G +P+  F+   
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 244 --AMKFVNASQLRYMRNXXXXXXXXXXXXXXPHY-------------------------Y 276
             A  F+   +  Y++N                                          +
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336
            S T  N G M+  +          +S N   G IP  I ++  L +L+L +N++ G IP
Sbjct: 624 TSPTFDNNGSMMFLD----------MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 337 SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSS 396
              GDL  L  LDLS+N   G+IPQ ++ LT L   ++S+NNL+GPIPE  QF TF  + 
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
Query: 397 FDGNSGLCGKPLFKECENSEAPANEDQIA 425
           F  N GLCG PL   C+    P+N D  A
Sbjct: 734 FLNNPGLCGYPL-PRCD----PSNADGYA 757

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 195/449 (43%), Gaps = 68/449 (15%)
Query: 26  NKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI- 84
           N   G +P   L   M+    L+LS N  +G +   S+   S+   TLDLSSN   GPI 
Sbjct: 325 NNFSGELPMDTL-LKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 85  ----PAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS--- 137
                 P    +   +  N  TG+IP  + N S L  L LS N LSG +P  LG+ S   
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 138 --------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDT 183
                            M    L  + +  N L G IP  L+NC  L  I L NN++   
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 184 FPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWN 243
            P W+G L  L IL L +N+F G I     +C    L  +DL+ N F G +P+  F+   
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 244 --AMKFVNASQLRYMRNXXXXXXXXXXXXXXPHY-------------------------Y 276
             A  F+   +  Y++N                                          +
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336
            S T  N G M+  +          +S N   G IP  I ++  L +L+L +N++ G IP
Sbjct: 621 TSPTFDNNGSMMFLD----------MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 337 SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSS 396
              GDL  L  LDLS+N   G+IPQ ++ LT L   ++S+NNL+GPIPE  QF TF  + 
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 730
Query: 397 FDGNSGLCGKPLFKECENSEAPANEDQIA 425
           F  N GLCG PL   C+    P+N D  A
Sbjct: 731 FLNNPGLCGYPL-PRCD----PSNADGYA 754

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 106/273 (38%), Gaps = 55/273 (20%)
Query: 160 IPKSLANCAVLEIIDLGN-NQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFP 218
           IP SLAN   L  + +G  N ++   P  +  L++L  L +   N  G I +   +    
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--IK 125
Query: 219 KLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNXXXXXXXXXXXXXXPHYYYS 278
            L  +D S N+ +G LP       N +                               + 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGIT----------------------------FD 157
Query: 279 LTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC 338
               +     SY     + T++ +S N   G+IP + ANL  L  + L+ N LEG     
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216
Query: 339 FG-----------------DLTK------LESLDLSNNWFSGQIPQQLTGLTFLEFFNVS 375
           FG                 DL K      L  LDL NN   G +PQ LT L FL   NVS
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 376 HNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPL 408
            NNL G IP+      FD S++  N  LCG PL
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	485
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-117
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  361 bits (928), Expect = e-117
 Identities = 133/441 (30%), Positives = 194/441 (43%), Gaps = 42/441 (9%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
            + L + + LK LDLS N+  G +P+ L N S  +   L+LS N+ +G          + 
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA-SLLTLDLSSNNFSG------PILPNL 388

Query: 69  GEF------TLDLSSNFLQGPIPAPPTKTRH--YL-VSKNNLTGEIPSWICNLSSLYILD 119
            +        L L +N   G IP   +       L +S N L+G IPS + +LS L  L 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 120 LSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ 179
           L  N L GE+P+ L            L  + +  N L G IP  L+NC  L  I L NN+
Sbjct: 449 LWLNMLEGEIPQELMY-------VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 180 IIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYF 239
           +    P W+G L  L IL L +N+F G I           L  +DL+ N F G +P+  F
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 240 QCWNAMKFVNAS--------QLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSN-------- 283
           +    +     +             +    +    +F G        L+  N        
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619

Query: 284 -KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDL 342
             G           +  + +S N   G IP  I ++  L +L+L +N++ G IP   GDL
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 343 TKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSG 402
             L  LDLS+N   G+IPQ ++ LT L   ++S+NNL+GPIPE  QF TF  + F  N G
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739

Query: 403 LCGKPLFKECENSEAPANEDQ 423
           LCG PL +   ++       Q
Sbjct: 740 LCGYPLPRCDPSNADGYAHHQ 760

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  252 bits (645), Expect = 7e-76
 Identities = 105/376 (27%), Positives = 157/376 (41%), Gaps = 48/376 (12%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNP-SMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF--T 72
             L+ LDLS+N + G      +         +L +S N ++G          S       
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG------DVDVSRCVNLEF 204

Query: 73  LDLSSNFLQGPIPAPPTKTR-HYL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP 130
           LD+SSN     IP     +   +L +S N L+G+    I   + L +L++S N   G +P
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA-NCAVLEIIDLGNNQIIDTFPAWLG 189
                         +L  + ++ N   G IP  L+  C  L  +DL  N      P + G
Sbjct: 265 PL---------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 190 TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249
           + S L+ L L SNNF GE+    +      L+++DLS N F+G LP        ++  ++
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG 309
            S      N  S        G           +              L  + L +NGF G
Sbjct: 375 LSS-----NNFS--------GPILPNLCQNPKNT-------------LQELYLQNNGFTG 408

Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
           +IP +++N   L  L L+ N L G IPS  G L+KL  L L  N   G+IPQ+L  +  L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 370 EFFNVSHNNLTGPIPE 385
           E   +  N+LTG IP 
Sbjct: 469 ETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  227 bits (582), Expect = 7e-67
 Identities = 106/382 (27%), Positives = 159/382 (41%), Gaps = 57/382 (14%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
             L +LDLS N L G +       S     +LN+S N+L    +       +S E  LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV-LDL 158

Query: 76  SSNFLQGPIPAPPTKTRH-----YL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGEL 129
           S+N + G        +       +L +S N ++G++   +    +L  LD+S NN S  +
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216

Query: 130 PRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLG 189
           P  LG+        S L  +D+S N L G   ++++ C  L+++++ +NQ +   P    
Sbjct: 217 P-FLGDC-------SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP- 267

Query: 190 TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249
            L  L  L L  N F GEI +  +      L  +DLS N F G +P  +  C        
Sbjct: 268 -LKSLQYLSLAENKFTGEIPDF-LSGACDTLTGLDLSGNHFYGAVPPFFGSC-------- 317

Query: 250 ASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNG 306
            S L  +    N  S     D                             L  + LS N 
Sbjct: 318 -SLLESLALSSNNFSGELPMDTLLKMRG----------------------LKVLDLSFNE 354

Query: 307 FHGEIPTSIANLKG-LQVLSLANNNLEGHIPSCFGD--LTKLESLDLSNNWFSGQIPQQL 363
           F GE+P S+ NL   L  L L++NN  G I           L+ L L NN F+G+IP  L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 364 TGLTFLEFFNVSHNNLTGPIPE 385
           +  + L   ++S N L+G IP 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPS 436

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  215 bits (550), Expect = 2e-62
 Identities = 97/383 (25%), Positives = 157/383 (40%), Gaps = 63/383 (16%)

Query: 17  HLKALDLSSNKLH---GNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTL 73
            + ++DLSS  L+     +   LL+  +     L LS + + G          +S   +L
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLS--LTGLESLFLSNSHING--SVSGFKCSASLT-SL 105

Query: 74  DLSSNFLQGPIPAPP-----TKTRHYLVSKNNLTGEIP-SWICNLSSLYILDLSDNNLSG 127
           DLS N L GP+         +  +   VS N L      S    L+SL +LDLS N++SG
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
                             L  + +S N + G +   ++ C  LE +D+ +N      P +
Sbjct: 166 ANVVGWVLSD----GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-F 218

Query: 188 LGTLSELDILVLQSNNFHGEIKEHKMECG-FPKLRIVDLSNNSFTGNLPSKYFQCWNAMK 246
           LG  S L  L +  N   G+            +L+++++S+N F G +P           
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSR---AISTCTELKLLNISSNQFVGPIPP---------- 265

Query: 247 FVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS 303
            +    L+Y+    N  +        G                          LT + LS
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLSGACDT----------------------LTGLDLS 302

Query: 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP-SCFGDLTKLESLDLSNNWFSGQIPQQ 362
            N F+G +P    +   L+ L+L++NN  G +P      +  L+ LDLS N FSG++P+ 
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

Query: 363 LTGLTF-LEFFNVSHNNLTGPIP 384
           LT L+  L   ++S NN +GPI 
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  171 bits (435), Expect = 2e-46
 Identities = 68/319 (21%), Positives = 131/319 (41%), Gaps = 65/319 (20%)

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
           ++DLSS  L                        + S + +L+ L  L LS+++++G +  
Sbjct: 54  SIDLSSKPLNVGF------------------SAVSSSLLSLTGLESLFLSNSHINGSVSG 95

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIP--KSLANCAVLEIIDLGNNQIIDTFPA-WL 188
                   F   ++L  +D+S N L G +    SL +C+ L+ +++ +N +         
Sbjct: 96  --------FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147

Query: 189 GTLSELDILVLQSNNFHGEI-KEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF 247
             L+ L++L L +N+  G       +  G  +L+ + +S N  +G++             
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----------V 196

Query: 248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGF 307
                L ++   +SS    +F    P     L   +             L  + +S N  
Sbjct: 197 SRCVNLEFLD--VSSN---NFSTGIP----FLGDCSA------------LQHLDISGNKL 235

Query: 308 HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG-L 366
            G+   +I+    L++L++++N   G IP     L  L+ L L+ N F+G+IP  L+G  
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 367 TFLEFFNVSHNNLTGPIPE 385
             L   ++S N+  G +P 
Sbjct: 294 DTLTGLDLSGNHFYGAVPP 312

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  154 bits (392), Expect = 1e-40
 Identities = 57/280 (20%), Positives = 96/280 (34%), Gaps = 61/280 (21%)

Query: 110 CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169
           C    +  +DLS   L+          S + ++ + L  + +S++ + G +       A 
Sbjct: 47  CRDDKVTSIDLSSKPLNVGF----SAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSAS 101

Query: 170 LEIIDLGNNQIIDTFPA--WLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN 227
           L  +DL  N +         LG+ S L  L + SN      K          L ++DLS 
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS-GGLKLNSLEVLDLSA 160

Query: 228 NSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQM 287
           NS +G     +                                                 
Sbjct: 161 NSISGANVVGWVLSDG----------------CGE------------------------- 179

Query: 288 LSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLES 347
                    L  + +S N   G++   ++    L+ L +++NN    IP   GD + L+ 
Sbjct: 180 ---------LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227

Query: 348 LDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
           LD+S N  SG   + ++  T L+  N+S N   GPIP   
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 321 LQVLSLANNNLE---GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377
           +  + L++  L      + S    LT LESL LSN+  +G +         L   ++S N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN 110

Query: 378 NLTGPIPEANQF 389
           +L+GP+      
Sbjct: 111 SLSGPVTTLTSL 122

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  220 bits (563), Expect = 2e-68
 Identities = 81/316 (25%), Positives = 112/316 (35%), Gaps = 44/316 (13%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGE--LPRCLGNFSDTFMNGSNLGIIDMSH- 153
                 G +         +  LDLS  NL     +P  L N          L  + +   
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-------YLNFLYIGGI 86

Query: 154 NLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEI-KEHK 212
           N L G IP ++A    L  + + +  +    P +L  +  L  L    N   G +     
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145

Query: 213 MECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYF 272
                P L  +    N  +G +P  Y         +  S+     N L+        G  
Sbjct: 146 --SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-----NRLT--------GKI 190

Query: 273 PHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE 332
           P  + +L                 L  V LS N   G+      + K  Q + LA N+L 
Sbjct: 191 PPTFANLN----------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 333 GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTF 392
             +    G    L  LDL NN   G +PQ LT L FL   NVS NNL G IP+      F
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 393 DSSSFDGNSGLCGKPL 408
           D S++  N  LCG PL
Sbjct: 294 DVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (359), Expect = 1e-38
 Identities = 58/231 (25%), Positives = 89/231 (38%), Gaps = 28/231 (12%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
             P  + +   L  L ++   + G IP +L    ++    L+ S N+L+G        P 
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--IKTLVTLDFSYNALSG------TLPP 143

Query: 67  SSGEFT----LDLSSNFLQGPIPAP----PTKTRHYLVSKNNLTGEIPSWICNLSSLYIL 118
           S         +    N + G IP              +S+N LTG+IP    NL +L  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202

Query: 119 DLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNN 178
           DLS N L G+     G+         N   I ++ N L   +   +     L  +DL NN
Sbjct: 203 DLSRNMLEGDASVLFGSD-------KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN 254

Query: 179 QIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
           +I  T P  L  L  L  L +  NN  GEI +        +  +   +NN 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 310 EIPTSIANLKGLQ----VLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQ--IPQQL 363
           +I   + N   L          N    G +        ++ +LDLS         IP  L
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 364 TGLTFLEFFNVSH-NNLTGPIPE 385
             L +L F  +   NNL GPIP 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP 95

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (446), Expect = 3e-48
 Identities = 76/398 (19%), Positives = 129/398 (32%), Gaps = 52/398 (13%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
            N   +QK+L  LDLS N L        +   ++N   L LS N +            +S
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQ--LENLQELLLSNNKIQALKSEELDIFANS 171

Query: 69  GEFTLDLSSNFLQGPIP---APPTKTRHYLVSKNNLTGEIPSWIC---NLSSLYILDLSD 122
               L+LSSN ++   P       +     ++   L   +   +C     +S+  L LS+
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID 182
           + LS              +  +NL ++D+S+N L      S A    LE   L  N I  
Sbjct: 232 SQLSTTSNTTFLG-----LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 183 TFPAWLGTLSELDILVLQSNNFHGEIKEHKME-------CGFPKLRIVDLSNNSFTGNLP 235
            F   L  L  +  L L+ +     I    +             L  +++ +N   G   
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 236 SKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEK 292
           +          F     L+Y+    +F S              + SL  S          
Sbjct: 347 N---------MFTGLINLKYLSLSNSFTS------LRTLTNETFVSLAHSP--------- 382

Query: 293 IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP-SCFGDLTKLESLDLS 351
               L  + L+ N        + + L  L+VL L  N +   +    +  L  +  + LS
Sbjct: 383 ----LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 352 NNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
            N +          +  L+   +    L       + F
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  168 bits (428), Expect = 8e-46
 Identities = 79/391 (20%), Positives = 137/391 (35%), Gaps = 45/391 (11%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
                +   L +LD+  N +    P+      +     LNL  N L+        F + +
Sbjct: 42  AANFTRYSQLTSLDVGFNTISKLEPELCQK--LPMLKVLNLQHNELSQL--SDKTFAFCT 97

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRH--YL-VSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
               L L SN +Q     P  K ++   L +S N L+         L +L  L LS+N +
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP 185
                  L  F       S+L  +++S N ++   P        L  + L N Q+  +  
Sbjct: 158 QALKSEELDIF-----ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 186 AWLG---TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCW 242
             L      + +  L L ++          +   +  L ++DLS N+             
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND------ 266

Query: 243 NAMKFVNASQLRYMR---NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA 299
               F    QL Y     N +   FS   +G          + N    + Y  +    T 
Sbjct: 267 ---SFAWLPQLEYFFLEYNNIQHLFSHSLHG----------LFN----VRYLNLKRSFTK 309

Query: 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQI 359
             +S          S   LK L+ L++ +N++ G   + F  L  L+ L LSN++ S + 
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 360 PQQLT----GLTFLEFFNVSHNNLTGPIPEA 386
               T      + L   N++ N ++    +A
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDA 400

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  166 bits (423), Expect = 3e-45
 Identities = 78/431 (18%), Positives = 128/431 (29%), Gaps = 68/431 (15%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWL-LNPSMQNFSYLNLSKNSLTGFDQHPSVFPWS 67
           P        L  L L++ +L  ++ + L L  +  +   L+LS + L+      + F   
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS--NTTFLGL 245

Query: 68  SGEF--TLDLSSNFLQGPIPAPPTKTR--HYL-VSKNNLTGEIPSWICNLSSLYILDLSD 122
                  LDLS N L               Y  +  NN+       +  L ++  L+L  
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 123 NNLSGELP--RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI 180
           +     +           +F     L  ++M  N + G           L+ + L N+  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 181 -IDTFPAWLG---TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPS 236
            + T           S L IL L  N       +         L ++DL  N     L  
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESD--AFSWLGHLEVLDLGLNEIGQELTG 423

Query: 237 KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYI 296
           + ++    +  +  S      N         F            + +             
Sbjct: 424 QEWRGLENIFEIYLS-----YNKYLQLTRNSFAL----------VPS------------- 455

Query: 297 LTAVILSSNGFHG--EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN- 353
           L  ++L           P+    L+ L +L L+NNN+          L KLE LDL +N 
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 354 -------WFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA--------------NQFPTF 392
                     G     L GL+ L   N+  N       E               N   T 
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 393 DSSSFDGNSGL 403
            +S F+    L
Sbjct: 576 PASVFNNQVSL 586

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  159 bits (403), Expect = 2e-42
 Identities = 77/411 (18%), Positives = 139/411 (33%), Gaps = 55/411 (13%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
               L + P+ L    ++  L+L+ N+L                + L++  N+++     
Sbjct: 12  SHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISKL--E 65

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIP---APPTKTRHYLVSKNNLTGEIPSWICNLSSLYI 117
           P +         L+L  N L        A  T      +  N++     +      +L  
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCA--VLEIIDL 175
           LDLS N LS                  NL  + +S+N +Q    + L   A   L+ ++L
Sbjct: 126 LDLSHNGLSSTKLGTQVQL-------ENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEH-KMECGFPKLRIVDLSNNSFTGNL 234
            +NQI +  P     +  L  L L +      + E   +E     +R + LSN+  +   
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-T 237

Query: 235 PSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIP 294
            +  F     +K+ N + L    N L+     D + + P                     
Sbjct: 238 SNTTFL---GLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQ-------------------- 273

Query: 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANN---------NLEGHIPSCFGDLTKL 345
             L    L  N        S+  L  ++ L+L  +         +L       F  L  L
Sbjct: 274 --LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 346 ESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSS 396
           E L++ +N   G      TGL  L++ ++S++  +        F +   S 
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (400), Expect = 5e-42
 Identities = 69/398 (17%), Positives = 126/398 (31%), Gaps = 43/398 (10%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
            +       L+   L  N +       L    + N  YLNL ++         S+     
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 69  GEF-------TLDLSSNFLQGPIPAPPTKTRH--YL-VSKNNLTGEIPS----WICNLSS 114
             F        L++  N + G      T   +  YL +S +  +    +         S 
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 115 LYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS-LANCAVLEII 173
           L+IL+L+ N +S           D F    +L ++D+  N +   +          +  I
Sbjct: 383 LHILNLTKNKISKIES-------DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN 233
            L  N+ +         +  L  L+L+                   L I+DLSNN+    
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN- 494

Query: 234 LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM-------SNKGQ 286
           +     +    ++ ++        N L+  +     G   ++   L+        SN   
Sbjct: 495 INDDMLEGLEKLEILDLQH-----NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 287 MLSYEKIPYI--LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGD-LT 343
            +  E    +  L  + L  N  +    +   N   L+ L+L  N +       FG    
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381
            L  LD+  N F            F+ + N +H N+  
Sbjct: 610 NLTELDMRFNPFDCTCESI---AWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  150 bits (380), Expect = 3e-39
 Identities = 78/391 (19%), Positives = 119/391 (30%), Gaps = 70/391 (17%)

Query: 18  LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSS 77
            +  D S  KL   +P  L      N + LNL+ N L       + F   S   +LD+  
Sbjct: 6   HEVADCSHLKLT-QVPDDLPT----NITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGF 58

Query: 78  NFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS 137
           N                      ++   P     L  L +L+L  N LS           
Sbjct: 59  N---------------------TISKLEPELCQKLPMLKVLNLQHNELSQLSD------- 90

Query: 138 DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDIL 197
            TF   +NL  + +  N +Q            L  +DL +N +  T       L  L  L
Sbjct: 91  KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150

Query: 198 VLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYM- 256
           +L +N       E         L+ ++LS+N      P           F    +L  + 
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG---------CFHAIGRLFGLF 201

Query: 257 --RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTS 314
                L    +             L  ++             +  + LS++       T+
Sbjct: 202 LNNVQLGPSLTEKL-------CLELANTS-------------IRNLSLSNSQLSTTSNTT 241

Query: 315 IANLKG--LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFF 372
              LK   L +L L+ NNL       F  L +LE   L  N         L GL  + + 
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 373 NVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
           N+  +     I      P  D  SF     L
Sbjct: 302 NLKRSFTKQSI-SLASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (275), Expect = 1e-25
 Identities = 52/278 (18%), Positives = 99/278 (35%), Gaps = 46/278 (16%)

Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII 173
           S  + D S   L+ ++P  L          +N+ +++++HN L+     +    + L  +
Sbjct: 5   SHEVADCSHLKLT-QVPDDL---------PTNITVLNLTHNQLRRLPAANFTRYSQLTSL 54

Query: 174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN 233
           D+G N I    P     L  L +L LQ N       +         L  + L +NS    
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK--TFAFCTNLTELHLMSNSIQK- 111

Query: 234 LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKI 293
           + +  F     +  ++ S      N LSS                  + N          
Sbjct: 112 IKNNPFVKQKNLITLDLS-----HNGLSSTKLGTQVQ----------LEN---------- 146

Query: 294 PYILTAVILSSNGFHGEIPTSIANLKG--LQVLSLANNNLEGHIPSCFGDLTKLESLDLS 351
              L  ++LS+N         +       L+ L L++N ++   P CF  + +L  L L+
Sbjct: 147 ---LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 352 NNWFSGQIPQQLT---GLTFLEFFNVSHNNLTGPIPEA 386
           N      + ++L      T +   ++S++ L+      
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  160 bits (407), Expect = 4e-43
 Identities = 53/407 (13%), Positives = 118/407 (28%), Gaps = 83/407 (20%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
                       K L  +++ +      +P +L    +     +N++ N     +Q    
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA--LPEMQLINVACNRGISGEQLKDD 294

Query: 64  FPWSSGEF------TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYI 117
           +   +          + +  N L+                    T  + + +  +  L +
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLK--------------------TFPVETSLQKMKKLGM 334

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGN 177
           L+   N L G+LP         F +   L  +++++N +             +E +   +
Sbjct: 335 LECLYNQLEGKLP--------AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 178 NQIIDTFPAWL--GTLSELDILVLQSNNFHGEIKEHKME-----CGFPKLRIVDLSNNSF 230
           N++    P      ++S +  +    N       ++             +  ++LSNN  
Sbjct: 387 NKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 231 TGNLPSKYFQCWNAMKFVNASQLRYMR---NFLSSYFSFDFYGYFPHYYYSLTMSNKGQM 287
           +               F   S L  +    N L+           P         N    
Sbjct: 446 SKFPKEL---------FSTGSPLSSINLMGNMLTE---------IPKNSLKDENENFKNT 487

Query: 288 LSYEKIPYILTAVILSSNGFHGEIPTSIA--NLKGLQVLSLANNNLEGHIPSCFGDLTKL 345
                    LT++ L  N     +        L  L  + L+ N+     P+   + + L
Sbjct: 488 YL-------LTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538

Query: 346 ESLDLSN------NWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
           +   + N      N    + P+ +T    L    +  N++   + E 
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK 584

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  157 bits (399), Expect = 4e-42
 Identities = 57/390 (14%), Positives = 113/390 (28%), Gaps = 71/390 (18%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKL-HGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
           + ++        + ++ + +  N L    +   L    M+    L    N L G    P+
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGK--LPA 348

Query: 63  VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRH--YL-VSKNNLTGEIPSW--ICNLSSLYI 117
                    +L+L+ N +          T     L  + N L   IP+     ++S +  
Sbjct: 349 FGSEIKLA-SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGN 177
           +D S N +     +       T   G N+  I++S+N +     +  +  + L  I+L  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 178 NQI-------IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230
           N +       +            L  + L+ N       + +     P L  +DLS NSF
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA-TTLPYLVGIDLSYNSF 525

Query: 231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSY 290
           +   P++             S L+                                    
Sbjct: 526 SK-FPTQPLNS---------STLKGF---------------------------------- 541

Query: 291 EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350
                I        N    E P  I     L  L + +N++   +         +  LD+
Sbjct: 542 ----GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDI 594

Query: 351 SNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
            +N         +        + + ++   
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  155 bits (395), Expect = 2e-41
 Identities = 58/396 (14%), Positives = 124/396 (31%), Gaps = 73/396 (18%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
           N+      + +   L+   + ++               +N  Y    K            
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWE--NENSEYAQQYKT----------- 240

Query: 64  FPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDN 123
                     DL  + L               V       ++P+++  L  + +++++ N
Sbjct: 241 ---------EDLKWDNL--------KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 124 NL-SGELPRCLGNFSDTFMNGSNLGIIDMSHN-LLQGRIPKSLANCAVLEIIDLGNNQII 181
              SGE  +           G  + II + +N L    +  SL     L +++   NQ+ 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC 241
              PA  G+  +L  L L  N                ++  +  ++N     +P+ +   
Sbjct: 344 GKLPA-FGSEIKLASLNLAYNQITEIPANFCGFT--EQVENLSFAHNKLKY-IPNIFDAK 399

Query: 242 WNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILT 298
                  + S +  +    N + S    +F    P            + ++       ++
Sbjct: 400 -------SVSVMSAIDFSYNEIGSVDGKNFDPLDP---------TPFKGIN-------VS 436

Query: 299 AVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG-------HIPSCFGDLTKLESLDLS 351
           ++ LS+N          +    L  ++L  N L              F +   L S+DL 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 352 NNWFSGQIPQ--QLTGLTFLEFFNVSHNNLTGPIPE 385
            N  +  +    + T L +L   ++S+N+ +   P 
Sbjct: 497 FNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  150 bits (381), Expect = 1e-39
 Identities = 57/412 (13%), Positives = 122/412 (29%), Gaps = 73/412 (17%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLN--PSMQNFSYLNLSKNSLTGFDQHPSVF 64
             P+ + Q   L+ L L S+    N   +      +  +       +             
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 65  PWSSGEFTLDLSSNFLQGPIPA---PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
              S      ++S+  Q  I        K        NN+T  +   +  L+ L    + 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214

Query: 122 DNNLSGELPRCLGNFSDTFMNG------------SNLGIIDMSHNLLQGRIPKSLANCAV 169
           ++    E         ++                 +L  +++ +     ++P  L     
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 170 LEIIDLGNNQIID--------TFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLR 221
           +++I++  N+ I            A      ++ I+ +  NN      E  +     KL 
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLG 333

Query: 222 IVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYS 278
           +++   N   G LP+          F +  +L  +    N ++     +F G+       
Sbjct: 334 MLECLYNQLEGKLPA----------FGSEIKLASLNLAYNQITE-IPANFCGFTEQ---- 378

Query: 279 LTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP--TSIANLKGLQVLSLANNNLEGHIP 336
                             +  +  + N     IP      ++  +  +  + N +     
Sbjct: 379 ------------------VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 337 SCFGDL-------TKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381
             F  L         + S++LSNN  S    +  +  + L   N+  N LT 
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (370), Expect = 4e-38
 Identities = 45/377 (11%), Positives = 98/377 (25%), Gaps = 72/377 (19%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFD--QHPSVFPWSSGEFTLD 74
            +  L L      G +P  +    +     L L  +     +    P     +  +    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQ--LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 75  LSSNFLQGPIPAPPTKT-----RHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGEL 129
                 Q        +          ++ +     I            +    NN++  +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V 198

Query: 130 PRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLG 189
            + +   +        L    M ++                E  +    Q   T      
Sbjct: 199 SKAVMRLT-------KLRQFYMGNSPFVAENICEA-----WENENSEYAQQYKTEDLKWD 246

Query: 190 TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249
            L +L  + + +     ++         P++++++++ N                     
Sbjct: 247 NLKDLTDVEVYNCPNLTKL--PTFLKALPEMQLINVACNRGIS-GEQLKDDWQALADAPV 303

Query: 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGF-H 308
             +++                                             + +  N    
Sbjct: 304 GEKIQI--------------------------------------------IYIGYNNLKT 319

Query: 309 GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTF 368
             + TS+  +K L +L    N LEG +P+ FG   KL SL+L+ N  +            
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQ 378

Query: 369 LEFFNVSHNNLTGPIPE 385
           +E  + +HN L   IP 
Sbjct: 379 VENLSFAHNKLKY-IPN 394

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (297), Expect = 1e-28
 Identities = 36/301 (11%), Positives = 85/301 (28%), Gaps = 55/301 (18%)

Query: 99  NNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG 158
           +    +    + +   +  L L     SG +P  +G  +        L ++ +  +  + 
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT-------ELEVLALGSHGEKV 119

Query: 159 ----RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKME 214
                 PK ++     E           TF  +       D++    N+   +    K  
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 215 CGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPH 274
               K   +   +N+ T  +     +          ++LR    ++ +            
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVMRL---------TKLRQF--YMGN------------ 215

Query: 275 YYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGH 334
                   +       E I              +        NLK L  + + N      
Sbjct: 216 --------SP---FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 335 IPSCFGDLTKLESLDLSNNWF--------SGQIPQQLTGLTFLEFFNVSHNNL-TGPIPE 385
           +P+    L +++ ++++ N            Q          ++   + +NNL T P+  
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 386 A 386
           +
Sbjct: 325 S 325

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  117 bits (294), Expect = 4e-28
 Identities = 55/376 (14%), Positives = 101/376 (26%), Gaps = 88/376 (23%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
              L         +  L +L+L+ N++   IP        +    L+ + N L       
Sbjct: 339 YNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANFCG-FTEQVENLSFAHNKLKY----- 391

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
                                 IP                         ++S +  +D S
Sbjct: 392 ----------------------IPNIFD-------------------AKSVSVMSAIDFS 410

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI- 180
            N +     +       T   G N+  I++S+N +     +  +  + L  I+L  N + 
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 181 ------IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNL 234
                 +            L  + L+ N       + +     P L  +DLS NSF+   
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA-TTLPYLVGIDLSYNSFSK-F 528

Query: 235 PSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIP 294
           P++         F   +Q     N             +P                     
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTL--------REWPEGITLCPS------------- 567

Query: 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354
             LT + + SN     +   I     + VL + +N       S      +     L  + 
Sbjct: 568 --LTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD- 621

Query: 355 FSGQIPQQLTGLTFLE 370
                 Q + G   L+
Sbjct: 622 ----KTQDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.5 bits (238), Expect = 5e-21
 Identities = 26/263 (9%), Positives = 72/263 (27%), Gaps = 39/263 (14%)

Query: 142 NGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI----IDTFPAWLGTLSELDIL 197
           +   +  + +      GR+P ++     LE++ LG++          P  +      +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 198 VLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMR 257
                ++     ++     F  L    ++++    ++             +  +Q+  + 
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT------LKDTQIGQLS 192

Query: 258 NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIAN 317
           N ++                 LT                L    + ++ F  E       
Sbjct: 193 NNITF---------VSKAVMRLTK---------------LRQFYMGNSPFVAENICEAWE 228

Query: 318 LKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377
                  +             + +L  L  +++ N     ++P  L  L  ++  NV+ N
Sbjct: 229 N-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 378 NLTGPIPEANQFPTFDSSSFDGN 400
                    + +     +     
Sbjct: 284 RGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 303 SSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQ---- 358
             + +  +   S+ +   +  LSL      G +P   G LT+LE L L ++         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 359 IPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
            P+ ++     E       +      + +    F     D  +  
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  155 bits (394), Expect = 2e-41
 Identities = 67/388 (17%), Positives = 119/388 (30%), Gaps = 57/388 (14%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPS-MQNFSYLNLSKNSLTGFDQHPSVFPWS 67
              ++    L+   L   +          + S ++    L + +  L   D +       
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 68  SGEFT----LDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYILDLSD 122
               T      L S  ++            +L +            + +L  L       
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ--GRIPKSLANCAVLEIIDLGNNQI 180
            N              + ++  +L  +D+S N L   G   +S      L+ +DL  N +
Sbjct: 338 GNAF------------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 181 IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240
           I     +LG L +L+ L  Q +N      E  +      L  +D+S+             
Sbjct: 386 ITMSSNFLG-LEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGI--- 440

Query: 241 CWNAMKFVNASQLRYMR---NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYIL 297
                 F   S L  ++   N     F  D +    +                      L
Sbjct: 441 ------FNGLSSLEVLKMAGNSFQENFLPDIFTELRN----------------------L 472

Query: 298 TAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSG 357
           T + LS        PT+  +L  LQVL++++NN        +  L  L+ LD S N    
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

Query: 358 QIPQQLTGL-TFLEFFNVSHNNLTGPIP 384
              Q+L    + L F N++ N+      
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  144 bits (365), Expect = 1e-37
 Identities = 61/397 (15%), Positives = 112/397 (28%), Gaps = 44/397 (11%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
               +   HL  L L+ N +            + +   L   + +L   +          
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSG--LSSLQKLVAVETNLASLE--NFPIGHLK 124

Query: 69  GEFTLDLSSNFLQGPIPAPP----TKTRHYLVSKNNLTGEIPSWICNLSSL----YILDL 120
               L+++ N +Q           T   H  +S N +     + +  L  +      LDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK-SLANCAVLEIIDL---- 175
           S N ++   P               L  + + +N     + K  +   A LE+  L    
Sbjct: 185 SLNPMNFIQPGAFKEI--------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 176 --GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKE-HKMECGFPKLRIVDLSNNSFTG 232
                 +     + L  L  L I   +       + +   +      +    L + +   
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 233 NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEK 292
                Y   W          L  +      + +          + S    N    +    
Sbjct: 297 VKDFSYNFGW--------QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

Query: 293 IPYILTAVILSSNG--FHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350
               L  + LS NG  F G    S      L+ L L+ N +   + S F  L +LE LD 
Sbjct: 349 ----LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 351 SNNWFSGQIPQQ-LTGLTFLEFFNVSHNNLTGPIPEA 386
            ++             L  L + ++SH +        
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  143 bits (362), Expect = 3e-37
 Identities = 75/416 (18%), Positives = 126/416 (30%), Gaps = 76/416 (18%)

Query: 6   FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLN-PSMQNFS-YLNLSKNSLTGFDQHPSV 63
           F+ P +     +L+ LDLSSNK+       L     M   +  L+LS N +      P  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ--PGA 196

Query: 64  FPWSSGEFTLDLSSNFLQGPIPAPPTK----------TRHYLVSKNNLTGEIPSWICNLS 113
           F        L L +NF    +     +                ++ NL     S +  L 
Sbjct: 197 FKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII 173
           +L I +     L   L     +  D F   +N+    +    ++       +     + +
Sbjct: 256 NLTIEEFRLAYLDYYL----DDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHL 309

Query: 174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKME------------------- 214
           +L N +        L +L  L     +  N   E+    +E                   
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 215 CGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMR---NFLSSYFSFDFYGY 271
            G   L+ +DLS N       +          F+   QL ++    + L     F  +  
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSN----------FLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 272 FPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNL 331
             +                      L  + +S              L  L+VL +A N+ 
Sbjct: 420 LRN----------------------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 332 EGHIPSC-FGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
           + +     F +L  L  LDLS        P     L+ L+  N+SHNN        
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  136 bits (344), Expect = 9e-35
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLH--GNIPKWLLNPSMQNFSYLNLSKNSLTGFDQ 59
           + N             L+ LDLS N L   G   +        +  YL+LS N +     
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNGVITM-- 388

Query: 60  HPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV----SKNNLTGEIPSWICNLSSL 115
             S F        LD   + L+         +   L+    S  +           LSSL
Sbjct: 389 -SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 116 YILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL 175
            +L ++ N+             D F    NL  +D+S   L+   P +  + + L+++++
Sbjct: 448 EVLKMAGNSFQENFL------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLP 235
            +N            L+ L +L    N+     K+  ++     L  ++L+ N F     
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACTCE 560

Query: 236 SKYFQCW 242
            + F  W
Sbjct: 561 HQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  134 bits (338), Expect = 7e-34
 Identities = 68/388 (17%), Positives = 123/388 (31%), Gaps = 60/388 (15%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
             N ++ P+ L      K LDLS N L         +        L+LS+  +       
Sbjct: 16  ELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTI--ED 69

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
             +   S   TL L+                      N +          LSSL  L   
Sbjct: 70  GAYQSLSHLSTLILTG---------------------NPIQSLALGAFSGLSSLQKLVAV 108

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG-RIPKSLANCAVLEIIDLGNNQI 180
           + NL+      +G+          L  ++++HNL+Q  ++P+  +N   LE +DL +N+I
Sbjct: 109 ETNLASLENFPIGHL-------KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 181 IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC-GFPKLRIVDLSNNSFTGNLPSKYF 239
              +   L  L ++ +L L  +     +   +       +L  + L NN  + N+     
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 240 QCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA 299
           Q          + L   R  L  + +      F         +   +      +      
Sbjct: 222 Q--------GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL------ 267

Query: 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQI 359
                + +  +I      L  +   SL +  +E      +      + L+L N  F    
Sbjct: 268 -----DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFP 320

Query: 360 PQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
             +L  L  L F   + N       E +
Sbjct: 321 TLKLKSLKRLTF---TSNKGGNAFSEVD 345

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  124 bits (313), Expect = 1e-30
 Identities = 58/372 (15%), Positives = 100/372 (26%), Gaps = 54/372 (14%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
           +  +      ++ +  L S  +               + +L L       F         
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLELVNCKFGQFP-----TLK 323

Query: 67  SSGEFTLDLSSNFLQGPIPAPPTKTRHYL-VSKNNLT--GEIPSWICNLSSLYILDLSDN 123
                 L  +SN            +  +L +S+N L+  G         +SL  LDLS N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS-LANCAVLEIIDLGNNQIID 182
            +           S  F+    L  +D  H+ L+     S   +   L  +D+ +     
Sbjct: 384 GVIT--------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 183 TFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCW 242
            F      LS L++L +  N+F               L  +DLS       L    F   
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQ-LSPTAFNSL 493

Query: 243 NAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVIL 302
           ++++ +N S      N   S      Y                           L  +  
Sbjct: 494 SSLQVLNMS-----HNNFFS-LDTFPYKCLNS----------------------LQVLDY 525

Query: 303 SSNGFHGEIPTSIANL-KGLQVLSLANNNLEGHIPSC--FGDLTKLESLDLSNNWFSGQI 359
           S N         + +    L  L+L  N+             +     L +         
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 585

Query: 360 PQQLTGLTFLEF 371
           P    G+  L  
Sbjct: 586 PSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (303), Expect = 2e-29
 Identities = 51/335 (15%), Positives = 95/335 (28%), Gaps = 58/335 (17%)

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
           T               P  T++  +S N L         +   L +LDLS   +      
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED- 69

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
                   + + S+L  + ++ N +Q     + +  + L+ +      +       +G L
Sbjct: 70  ------GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS 251
             L  L +  N      K  +       L  +DLS+N       +               
Sbjct: 124 KTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCT---------DLRVLH 173

Query: 252 QLRYM-------RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSS 304
           Q+  +        N ++      F                 + +        L  + L +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAF-----------------KEIR-------LHKLTLRN 209

Query: 305 NGFHGEIP-TSIANLKGLQVLSLANN------NLEGHIPSCFGDLTKLESLDLS---NNW 354
           N     +  T I  L GL+V  L         NLE    S    L  L   +      ++
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 355 FSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
           +   I      LT +  F++    +      +  F
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (283), Expect = 8e-27
 Identities = 58/315 (18%), Positives = 95/315 (30%), Gaps = 74/315 (23%)

Query: 94  YLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSH 153
           Y   + N   +IP  +    S   LDLS N L         +F         L ++D+S 
Sbjct: 12  YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFP-------ELQVLDLSR 61

Query: 154 NLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKM 213
             +Q     +  + + L  + L  N I          LS L  LV    N          
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF--P 119

Query: 214 ECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFP 273
                 L+ +++++N        +YF         N + L +                  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFS--------NLTNLEH------------------ 153

Query: 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV----LSLANN 329
                                     + LSSN       T +  L  + +    L L+ N
Sbjct: 154 --------------------------LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 330 NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQ-LTGLTFLEFFNVSHNNLTGPIPEANQ 388
            +    P  F ++ +L  L L NN+ S  + +  + GL  LE   +              
Sbjct: 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----EGN 242

Query: 389 FPTFDSSSFDGNSGL 403
              FD S+ +G   L
Sbjct: 243 LEKFDKSALEGLCNL 257

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  152 bits (385), Expect = 1e-39
 Identities = 51/412 (12%), Positives = 116/412 (28%), Gaps = 72/412 (17%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
            +     FL   + L   DL  + ++ N         ++  S ++L    +       + 
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRN----PEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 64  FPWSSGEFT----LDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILD 119
              +    T    +  +++                                NL  L  ++
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNI--AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 120 LSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG---------RIPKSLANCAVL 170
           L +     +LP  L +          L  ++++ N             R+         +
Sbjct: 498 LYNCPNMTQLPDFLYDLP-------ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 171 EIIDLGNNQIID-TFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
           +I  +G N + +    A L  + +L +L    N     ++         KL  + L  N 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAF---GTNVKLTDLKLDYNQ 606

Query: 230 FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLS 289
               +P  +    + ++ +  S      N L            P+ + + ++        
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFS-----HNKLKY---------IPNIFNAKSVYV------ 645

Query: 290 YEKIPYILTAVILSSNGFHGEIPT-----SIANLKGLQVLSLANNNLEGHIPSCFGDLTK 344
                  + +V  S N    E                  ++L+ N ++      F   + 
Sbjct: 646 -------MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 345 LESLDLSNNWFS-------GQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
           + ++ LSNN  +                   L   ++  N LT  + +  + 
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRA 749

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (384), Expect = 1e-39
 Identities = 63/424 (14%), Positives = 126/424 (29%), Gaps = 72/424 (16%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
                    K L  ++L +      +P +L +  +     LN++ N      Q  + +  
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYD--LPELQSLNIACNRGISAAQLKADWTR 539

Query: 67  SSGEF-------TLDLSSNFLQGPIPAPP-----TKTRHYLVSKNNLTGEIPSWICNLSS 114
            + +           +  N L+   PA        K        N +   + +       
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVK 596

Query: 115 LYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK--SLANCAVLEI 172
           L  L L  N +  E+P       D       +  +  SHN L+  IP   +  +  V+  
Sbjct: 597 LTDLKLDYNQIE-EIP------EDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648

Query: 173 IDLGNNQIIDTFPAWLGTLSE-----LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN 227
           +D   N+I         ++ +        + L  N       E  +      +  + LSN
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE--LFATGSPISTIILSN 706

Query: 228 NSFTGNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNK 284
           N  T ++P    +  +   + N   L  +    N L+S             + + T+   
Sbjct: 707 NLMT-SIPENSLKPKDGN-YKNTYLLTTIDLRFNKLTS---------LSDDFRATTLPY- 754

Query: 285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSL------ANNNLEGHIPSC 338
                       L+ + +S N F    PT   N   L+   +        N +    P+ 
Sbjct: 755 ------------LSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 339 FGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT-GPIPEANQFPTFDSSSF 397
                 L  L + +N     + ++L     L   +++ N      +     +        
Sbjct: 802 ITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 398 DGNS 401
             + 
Sbjct: 859 LYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  135 bits (342), Expect = 4e-34
 Identities = 60/402 (14%), Positives = 116/402 (28%), Gaps = 69/402 (17%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
             P+ + Q   LK L   ++    +   +       + S     +  +           +
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM---HYKKMFLDY 394

Query: 67  SSGEFTLDLSSN-FLQGPIPAPPTKTRH------YLVSKNNLTGEIPSWICNLSSLYILD 119
                  DL  +   + P   P  K          + +  N    I   I  L+ L I+ 
Sbjct: 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 120 LSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ 179
            +++  +      +           +    +  +         S +N   L  ++L N  
Sbjct: 455 FANSPFTY-DNIAV-----------DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 180 IIDTFPAWLGTLSELDILVLQSNNFHGEIKEH-------KMECGFPKLRIVDLSNNSFTG 232
            +   P +L  L EL  L +  N      +           E   PK++I  +  N+   
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 233 NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEK 292
              S   Q    +  ++        N +    +F                  G  +    
Sbjct: 563 FPASASLQKMVKLGLLDCV-----HNKVRHLEAF------------------GTNVK--- 596

Query: 293 IPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCF--GDLTKLESLD 349
               LT + L  N    EIP    A    ++ L  ++N L+  IP+ F    +  + S+D
Sbjct: 597 ----LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVD 650

Query: 350 LSNNWFSGQIPQQLTGLTF-----LEFFNVSHNNLTGPIPEA 386
            S N    +       +            +S+N +     E 
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (274), Expect = 1e-25
 Identities = 43/249 (17%), Positives = 71/249 (28%), Gaps = 27/249 (10%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
             N             L  L L  N++   IP+            L  S N L      P
Sbjct: 581 VHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLKYI---P 635

Query: 62  SVFPWSSGEF--TLDLSSNFLQGPIPAPPTKTRHYL--------VSKNNLTGEIPSWICN 111
           ++F   S     ++D S N +             Y         +S N +          
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA--NCAV 169
            S +  + LS+N ++      L      + N   L  ID+  N L   +           
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQ------SNNFHGEIKEHKMECGFPKLRIV 223
           L  +D+  N    +FP      S+L    ++       N    +       C  P L  +
Sbjct: 755 LSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC--PSLIQL 811

Query: 224 DLSNNSFTG 232
            + +N    
Sbjct: 812 QIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  109 bits (274), Expect = 1e-25
 Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 32/308 (10%)

Query: 98  KNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157
              L G+   +     +  I    + N + EL            N   +  + ++    +
Sbjct: 278 WEALDGKNWRYYSGTINNTIH-SLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGF 217
           GR+P ++     L+++  G +    +   +       D+   + +      K+  ++   
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY-D 395

Query: 218 PKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYY 277
            +L + DL  ++   N   K  +  + +     +Q+  + N ++                
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISL-KDTQIGNLTNRITF---------ISKAIQ 445

Query: 278 SLTM-------SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNN 330
            LT        ++     +Y+ I              +     S +NLK L  + L N  
Sbjct: 446 RLTKLQIIYFANSP---FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 331 LEGHIPSCFGDLTKLESLDLSNNWFSG---------QIPQQLTGLTFLEFFNVSHNNLTG 381
               +P    DL +L+SL+++ N             ++         ++ F + +NNL  
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 382 PIPEANQF 389
             P +   
Sbjct: 563 -FPASASL 569

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 35/298 (11%), Positives = 82/298 (27%), Gaps = 46/298 (15%)

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID 182
             L G+  R      +  ++  N    +   ++   +    L N   +  + L       
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 183 TFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCW 242
             P  +G L+EL +L   +++     +    E       + +   +    +    +    
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE--LTPDMSEERKHRIRMHYKKMFLDYD 395

Query: 243 NAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVIL 302
             +   +  Q                         ++  + + + +  +    +    I 
Sbjct: 396 QRLNLSDLLQD------------------------AINRNPEMKPIKKDSRISLKDTQIG 431

Query: 303 SSNGFHGEIPTSIANLKGLQVLSLANNNLEG-------------------HIPSCFGDLT 343
           +       I  +I  L  LQ++  AN+                       +    + +L 
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNS 401
            L  ++L N     Q+P  L  L  L+  N++ N           +         G  
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  146 bits (370), Expect = 3e-38
 Identities = 70/395 (17%), Positives = 131/395 (33%), Gaps = 54/395 (13%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
           ++             ++L+    +    I K L N ++Q+                    
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 64  FPWSSGEFTLDLSSNFLQGPIP---APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDL 120
                   +++L  ++            +  +   ++  +L+ E+PS +  LS+L  L L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI-PKSLANCAVLEIIDLGNNQ 179
           S N           NF        +L  + +  N  +  +    L N   L  +DL ++ 
Sbjct: 309 SANKFENLCQISASNFP-------SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 180 I--IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237
           I   D     L  LS L  L L  N       E   EC  P+L ++DL+           
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC--PQLELLDLAFTRLKVKDAQS 419

Query: 238 YFQCWNAMKFVNASQLRYMR---NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIP 294
            FQ        N   L+ +    + L       F G          +             
Sbjct: 420 PFQ--------NLHLLKVLNLSHSLLDISSEQLFDG----------LPA----------- 450

Query: 295 YILTAVILSSN---GFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLS 351
             L  + L  N     + +   S+  L  L++L L+  +L       F  L  +  +DLS
Sbjct: 451 --LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 352 NNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
           +N  +    + L+ L  + + N++ N+++  +P  
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (359), Expect = 1e-36
 Identities = 64/384 (16%), Positives = 124/384 (32%), Gaps = 41/384 (10%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
              L  QK L++L L SN +             +    L+   N++    +        +
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFP--TEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 69  GEFTLDLSSNFLQG--PIPAPPTKTRHYLVSKNNLTGEIPSWI--CNLSSLYILDLSDNN 124
              +L+L+ N + G  P        +            I   +    + SL++    D +
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 125 LSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTF 184
                P       +      ++  I++  +        +    + L+ +DL    +    
Sbjct: 240 DEDISPAVFEGLCEM-----SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SEL 293

Query: 185 PAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNA 244
           P+ L  LS L  LVL +N F    +       FP L  + +  N+    L +   +    
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 245 MKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSS 304
           ++ ++   L +     S   +             L+                L ++ LS 
Sbjct: 352 LRELD---LSHDDIETSDCCNLQLRN--------LSH---------------LQSLNLSY 385

Query: 305 NGFHGEIPTSIANLKGLQVLSLANNNLEGHIP-SCFGDLTKLESLDLSNNWFSGQIPQQL 363
           N        +      L++L LA   L+     S F +L  L+ L+LS++       Q  
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 364 TGLTFLEFFNVSHNNLTGPIPEAN 387
            GL  L+  N+  N+      +  
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  137 bits (346), Expect = 5e-35
 Identities = 62/386 (16%), Positives = 123/386 (31%), Gaps = 48/386 (12%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
                +  +L  LDL+  +++        +        L L+ N L       +      
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWIHEDTFQS--QHRLDTLVLTANPLIFM--AETALSGPK 105

Query: 69  GEFTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
               L      +      P           +  N+++            L +LD  +N +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP 185
                  + +        +    ++++ N + G I     + AV + ++ G  Q +    
Sbjct: 166 HYLSKEDMSSLQ-----QATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 186 AWLG--TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWN 243
             L   T+  L +   +  +                +  ++L  + F   + S  F C++
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFS 278

Query: 244 AMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS 303
            ++ ++ +        LS           P     L+                L  ++LS
Sbjct: 279 GLQELDLT-----ATHLSE---------LPSGLVGLST---------------LKKLVLS 309

Query: 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPS-CFGDLTKLESLDLSNN--WFSGQIP 360
           +N F      S +N   L  LS+  N     + + C  +L  L  LDLS++    S    
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 361 QQLTGLTFLEFFNVSHNNLTGPIPEA 386
            QL  L+ L+  N+S+N       EA
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEA 395

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  135 bits (343), Expect = 1e-34
 Identities = 71/416 (17%), Positives = 130/416 (31%), Gaps = 70/416 (16%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
           + LK LD  +N +H    + + +        LNL+ N + G +  P  F  +  + +L+ 
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE--PGAFDSAVFQ-SLNF 209

Query: 76  SSNFLQGPIP-----APPTKTRHYLVSKNNLTGEIPSWICNLS--SLYILDLSDNNLSGE 128
                   I      +             +     P+    L   S+  ++L  +     
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188
                  F       S L  +D++   L   +P  L   + L+ + L  N+  +      
Sbjct: 270 SSNTFHCF-------SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV 248
                L  L ++ N    E+    +E     LR +DLS++    +               
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLE-NLENLRELDLSHDDIETSDCCNLQ-------LR 373

Query: 249 NASQLRYMR---NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN 305
           N S L+ +    N   S  +  F                            L  + L+  
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKE----------CPQ-------------LELLDLAFT 410

Query: 306 GFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN---WFSGQIPQ 361
               +   S   NL  L+VL+L+++ L+      F  L  L+ L+L  N     + Q   
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 362 QLTGLTFLEFFNVSHNNLTGPIPEA--------------NQFPTFDSSSFDGNSGL 403
            L  L  LE   +S  +L+     A              N+  +    +     G+
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (337), Expect = 9e-34
 Identities = 54/379 (14%), Positives = 117/379 (30%), Gaps = 46/379 (12%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
             + L+ S N L            + N ++L+L++  +     H   F       TL L+
Sbjct: 34  STECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRCQIYWI--HEDTFQSQHRLDTLVLT 89

Query: 77  SNFLQGPIP---APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCL 133
           +N L        + P   +H    +  ++      + N  +L  L L  N++S       
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL--- 146

Query: 134 GNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII--DLGNNQIIDTFPAWLGTL 191
                       L ++D  +N +     + +++      +  +L  N  I          
Sbjct: 147 ----PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDS 201

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS 251
           +    L          I +         L +    +     ++    F+    +  ++  
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFE---GLCEMSVE 257

Query: 252 QLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEI 311
            +   +++  +  S  F+            S              L  + L++     E+
Sbjct: 258 SINLQKHYFFNISSNTFHC----------FSG-------------LQELDLTATHLS-EL 293

Query: 312 PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQI-PQQLTGLTFLE 370
           P+ +  L  L+ L L+ N  E        +   L  L +  N    ++    L  L  L 
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 371 FFNVSHNNLTGPIPEANQF 389
             ++SH+++        Q 
Sbjct: 354 ELDLSHDDIETSDCCNLQL 372

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (309), Expect = 4e-30
 Identities = 57/321 (17%), Positives = 102/321 (31%), Gaps = 22/321 (6%)

Query: 72  TLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP 130
           T +  +  L   IP   P  T     S N L     +    L +L  LDL+   +     
Sbjct: 16  TYNCENLGLNE-IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGT 190
                  DTF +   L  + ++ N L      +L+    L+ +      I       L  
Sbjct: 75  -------DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 191 LSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNA 250
              L+ L L SN+               KL+++D  NN+    L  +          ++ 
Sbjct: 128 QKTLESLYLGSNHISSIKLP--KGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLS- 183

Query: 251 SQLRYMRNFLSSYFSFDFYGYFP---HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGF 307
             L    N ++      F        ++  +  +    + L    I   L          
Sbjct: 184 --LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS-LWLGTFEDMDD 240

Query: 308 HGEIPTSIANLKG--LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG 365
               P     L    ++ ++L  +       + F   + L+ LDL+    S ++P  L G
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 366 LTFLEFFNVSHNNLTGPIPEA 386
           L+ L+   +S N        +
Sbjct: 300 LSTLKKLVLSANKFENLCQIS 320

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (270), Expect = 4e-25
 Identities = 65/380 (17%), Positives = 127/380 (33%), Gaps = 94/380 (24%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           + +L E P+ L     LK L LS+NK          N    + ++L++  N+        
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN--FPSLTHLSIKGNTKRLELG-T 343

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
                      LDLS + ++                    +      + NLS L  L+LS
Sbjct: 344 GCLENLENLRELDLSHDDIET-------------------SDCCNLQLRNLSHLQSLNLS 384

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS-LANCAVLEIIDLGNNQI 180
            N     L       ++ F     L ++D++   L+ +  +S   N  +L++++L ++ +
Sbjct: 385 YNEPLS-LK------TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 181 IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKME-CGFPKLRIVDLSNNSFTGNLPSKYF 239
             +       L  L  L LQ N+F     +         +L I+ LS    +  +    F
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAF 496

Query: 240 QCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA 299
                    +   + ++                                           
Sbjct: 497 T--------SLKMMNHVD------------------------------------------ 506

Query: 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN------ 353
             LS N        ++++LKG+  L+LA+N++   +PS    L++  +++L  N      
Sbjct: 507 --LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563

Query: 354 ---WFSGQIPQQLTGLTFLE 370
              +F     + +  L   E
Sbjct: 564 SNIYFLEWYKENMQKLEDTE 583

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 41/287 (14%), Positives = 76/287 (26%), Gaps = 91/287 (31%)

Query: 117 ILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG 176
             +  +  L+ E+P  L          ++   ++ S N+L      + +    L  +DL 
Sbjct: 16  TYNCENLGLN-EIPGTLP---------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT 65

Query: 177 NNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPS 236
             QI                  +  + F              +L  + L+ N        
Sbjct: 66  RCQI----------------YWIHEDTF----------QSQHRLDTLVLTANPLIF---- 95

Query: 237 KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYI 296
                      +  + L   +                                       
Sbjct: 96  -----------MAETALSGPKA-------------------------------------- 106

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           L  +     G        + N K L+ L L +N++            KL+ LD  NN   
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 357 GQIPQQLTGLTFLE--FFNVSHNNLTGPIPEANQFPTFDSSSFDGNS 401
               + ++ L        N++ N++ G  P A     F S +F G  
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 14/125 (11%)

Query: 293 IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN 352
           +P     +  S N       T+ + L  L  L L    +       F    +L++L L+ 
Sbjct: 31  LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 353 NWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA--------------NQFPTFDSSSFD 398
           N         L+G   L+        ++                    N   +       
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 399 GNSGL 403
               L
Sbjct: 151 PTEKL 155

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  134 bits (338), Expect = 5e-34
 Identities = 66/382 (17%), Positives = 113/382 (29%), Gaps = 53/382 (13%)

Query: 8   FPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPS----MQNFSYLNLSKNSLTGFDQHPSV 63
               L+    L    L   +        +  PS    + + +           F      
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 64  FPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDN 123
           F   +    + L+   ++     P       L        + P+   +L  L  L L+ N
Sbjct: 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMN 338

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV--LEIIDLGNNQII 181
             S          S   +   +L  +D+S N L      S ++     L  +DL  N  I
Sbjct: 339 KGS---------ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC 241
               A    L EL  L  Q +     + E        KL  +D+S  +   +        
Sbjct: 390 -IMSANFMGLEELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKIDFDGI---- 443

Query: 242 WNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILT 298
                F+  + L  +    N        + +    +                      LT
Sbjct: 444 -----FLGLTSLNTLKMAGNSFKDNTLSNVFANTTN----------------------LT 476

Query: 299 AVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQ 358
            + LS              L  LQ+L++++NNL     S +  L  L +LD S N     
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 359 IPQQLTGLTFLEFFNVSHNNLT 380
                     L FFN+++N++ 
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (309), Expect = 4e-30
 Identities = 65/423 (15%), Positives = 117/423 (27%), Gaps = 67/423 (15%)

Query: 6   FEFPNFLKQQKHLKALDLSSNKLHGNIPKWL--LNPSMQNFSYLNLSKNSLTGFDQHPSV 63
            + P +     +L  +DLS N +       L  L  + Q    L++S N +         
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ--DQA 200

Query: 64  FPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDN 123
           F        L L  NF    I                      + + NL+ L++  L   
Sbjct: 201 FQGIKLH-ELTLRGNFNSSNIM--------------------KTCLQNLAGLHVHRLILG 239

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGI--IDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181
               E    +           ++ I    +++              A +  + L    I 
Sbjct: 240 EFKDERNLEIFE-PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

Query: 182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC 241
                 +    +   L +          +       P L+ + L+ N  + +        
Sbjct: 299 YLED--VPKHFKWQSLSIIRCQL-----KQFPTLDLPFLKSLTLTMNKGSISFK------ 345

Query: 242 WNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYI-- 296
                 V    L Y+   RN LS      +     +    L +S  G ++       +  
Sbjct: 346 -----KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400

Query: 297 LTAVILSSNGFHGEIPTS-IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWF 355
           L  +    +        S   +L+ L  L ++  N +      F  LT L +L ++ N F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 356 SGQIPQQ-LTGLTFLEFFNVSHNNLTGPIPEA--------------NQFPTFDSSSFDGN 400
                       T L F ++S   L                     N     DSS ++  
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 401 SGL 403
             L
Sbjct: 521 YSL 523

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  116 bits (292), Expect = 5e-28
 Identities = 73/381 (19%), Positives = 119/381 (31%), Gaps = 37/381 (9%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
             K +DLS N L         N       +L+LS+  +         +        L L+
Sbjct: 33  STKNIDLSFNPLKILKSYSFSN--FSELQWLDLSRCEIETI--EDKAWHGLHHLSNLILT 88

Query: 77  SNFLQGPIPAPPTKTRH--YLV-SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCL 133
            N +Q   P   +       LV  +  L       I  L +L  L+++ N +        
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS------ 142

Query: 134 GNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN----CAVLEIIDLGNNQIIDTFPAWLG 189
                 F N +NL  +D+S+N +Q      L        V   +D+  N  ID       
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAF 201

Query: 190 TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCW--NAMKF 247
              +L  L L+ N     I +  +      L +  L    F      + F+      +  
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCL-QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM----SNKGQMLSYEKIPYILTAVILS 303
           V   + R       S     F+        +++         + L      +   ++ + 
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHC-----LANVSAMSLAGVSIKYLEDVPKHFKWQSLSII 315

Query: 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN--WFSGQIPQ 361
                 + PT   +L  L+ L+L  N     I      L  L  LDLS N   FSG    
Sbjct: 316 RCQLK-QFPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 362 QLTGLTFLEFFNVSHNNLTGP 382
              G   L   ++S N     
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIM 391

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (287), Expect = 3e-27
 Identities = 67/422 (15%), Positives = 117/422 (27%), Gaps = 71/422 (16%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
                   HL  L L+ N +    P       + +   L   +  L   +          
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSG--LTSLENLVAVETKLASLE--SFPIGQLI 128

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
               L+++ NF+                       ++P++  NL++L  +DLS N +   
Sbjct: 129 TLKKLNVAHNFIHS--------------------CKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII-DTFPAW 187
                 +      N      +DMS N +   I         L  + L  N    +     
Sbjct: 169 TV---NDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 188 LGTLSELDILVLQSNNFHGEIKEHKMECGFPK------LRIVDLSNNSFTGNLPSKYFQC 241
           L  L+ L +  L    F  E      E    +      +    L+  +   +        
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV----- 279

Query: 242 WNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILT 298
               KF   + +  M      +        +  +           + +      +P+ L 
Sbjct: 280 ----KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSII---RCQLKQFPTLDLPF-LK 331

Query: 299 AVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDL--TKLESLDLSNNWFS 356
           ++ L+ N   G I      L  L  L L+ N L       + DL    L  LDLS N   
Sbjct: 332 SLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLTGPIPEA---------------NQFPTFDSSSFDGNS 401
             +     GL  L+  +  H+ L      +                         F G +
Sbjct: 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 402 GL 403
            L
Sbjct: 449 SL 450

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (285), Expect = 4e-27
 Identities = 63/328 (19%), Positives = 96/328 (29%), Gaps = 45/328 (13%)

Query: 72  TLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP 130
           T       L   +P   P+ T++  +S N L         N S L  LDLS   +     
Sbjct: 15  TYQCMDQKLSK-VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGT 190
                    +    +L  + ++ N +Q   P S +    LE +     ++       +G 
Sbjct: 74  -------KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 191 LSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNA 250
           L  L  L +  N  H   K          L  VDLS N     +     Q       VN 
Sbjct: 127 LITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNL 184

Query: 251 SQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE 310
           S L    N +       F                 Q +        L  + L  N     
Sbjct: 185 S-LDMSLNPIDFIQDQAF-----------------QGIK-------LHELTLRGNFNSSN 219

Query: 311 IP-TSIANLKGLQVLSLA------NNNLEGHIPSCFGDLTKL--ESLDLSNNWFSGQIPQ 361
           I  T + NL GL V  L         NLE   PS    L  +  +   L+          
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279

Query: 362 QLTGLTFLEFFNVSHNNLTGPIPEANQF 389
           +   L  +   +++  ++         F
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLEDVPKHF 307

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (263), Expect = 3e-24
 Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 15/245 (6%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           + N             L  LDLS N L  +      +    +  +L+LS N         
Sbjct: 336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---S 392

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV----SKNNLTGEIPSWICNLSSLYI 117
           + F        LD   + L+         +   L+    S  N   +       L+SL  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGN 177
           L ++ N+            S+ F N +NL  +D+S   L+            L+++++ +
Sbjct: 453 LKMAGNSFKDNTL------SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 178 NQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237
           N ++    +    L  L  L    N          ++     L   +L+NNS       +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI--LQHFPKSLAFFNLTNNSVACICEHQ 564

Query: 238 YFQCW 242
            F  W
Sbjct: 565 KFLQW 569

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  123 bits (310), Expect = 4e-30
 Identities = 81/401 (20%), Positives = 134/401 (33%), Gaps = 58/401 (14%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
           R CNL + P  L      + L LS N +   +      P ++    L L           
Sbjct: 12  RFCNLTQVPQVLN---TTERLLLSFNYIR-TVTASSF-PFLEQLQLLELGSQYTP-LTID 65

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDL 120
              F        LDL S+ +   +                     P     L  L+ L L
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYF-LH--------------------PDAFQGLFHLFELRL 104

Query: 121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG-RIPKSLANCAVLEIIDLGNNQ 179
               LS  + +        F N   L  +D+S N ++   +  S      L+ ID  +NQ
Sbjct: 105 YFCGLSDAVLK-----DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 180 I----IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG----FPKLRIVDLSNNSFT 231
           I           L   + L    L +N+ +  +     +C        L I+D+S N +T
Sbjct: 160 IFLVCEHEL-EPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 232 GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQM--LS 289
            ++        NA+    A  L    + + + F F          ++    +  +   LS
Sbjct: 218 VDITGN---FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

Query: 290 YEKIPYI----------LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCF 339
           +  +  +          L  + L+ N  +     +   L  LQVL+L+ N L     S F
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 340 GDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
             L K+  +DL  N  +    Q    L  L+  ++  N LT
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  120 bits (302), Expect = 5e-29
 Identities = 84/438 (19%), Positives = 154/438 (35%), Gaps = 55/438 (12%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
                  +   LK++D SSN++       L     +  S+ +L+ NSL         +  
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV--SVDWGK 196

Query: 67  SSGEF------TLDLSSNFLQGPIP-----------APPTKTRHYLV----SKNNLTGEI 105
               F       LD+S N     I            A      H+++      +N+    
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 106 PSWICNL--SSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS 163
            +    L  SS+  LDLS   +   L       S  F    +L ++++++N +     ++
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVF-SLN------SRVFETLKDLKVLNLAYNKINKIADEA 309

Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
                 L++++L  N + + + +    L ++  + LQ N+    I + +      KL+ +
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA--IIQDQTFKFLEKLQTL 367

Query: 224 DLSNNSFT-----GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYS 278
           DL +N+ T      ++P  +      +     +    + +   +        YF      
Sbjct: 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427

Query: 279 LTM----SNKGQMLSYEKIPYI---LTAVILSSNGFHGEIPTSI-----ANLKGLQVLSL 326
           L +     N+    S ++ P     L  + L  N       T +       L  LQVL L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 327 ANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
            +N L    P  F  LT L  L L++N  +      L     LE  ++S N L    P  
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLL--APNP 543

Query: 387 NQFPTFDSSSFDGNSGLC 404
           + F +        N  +C
Sbjct: 544 DVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI-PSCFGDLTKLESLDLSNNWF 355
              ++LS N       +S   L+ LQ+L L +      I    F +L  L  LDL ++  
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 356 SGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
               P    GL  L    +    L+  + +   F
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 26/174 (14%), Positives = 46/174 (26%), Gaps = 31/174 (17%)

Query: 216 GFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHY 275
                  + LS N     + +  F     ++ +          +       + +   P+ 
Sbjct: 22  VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELG-----SQYTPLTIDKEAFRNLPN- 74

Query: 276 YYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335
                                L  + L S+  +   P +   L  L  L L    L   +
Sbjct: 75  ---------------------LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 336 --PSCFGDLTKLESLDLSNNWFSG-QIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
                F +L  L  LDLS N      +      L  L+  + S N +       
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
            +  +   HL+ L L+ N L+ ++P  + +  +     L+L+ N LT      +  P  +
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLN-SLPPGVFS-HLTALRGLSLNSNRLTVLS--HNDLP--A 526

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIP-SWICNLSSLYILDLSDN 123
               LD+S N L  P P          ++ N    E   S   N  +   + ++  
Sbjct: 527 NLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 19/97 (19%)

Query: 322 QVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381
           ++      NL   +P     L   E L LS N+           L  L+   +       
Sbjct: 7   RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 382 PIPEA---------------NQFPTFDSSSFDGNSGL 403
            I +                ++       +F G   L
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  109 bits (274), Expect = 9e-26
 Identities = 78/419 (18%), Positives = 139/419 (33%), Gaps = 46/419 (10%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
              N ++ P+ L      K LDLS N L  ++  +    S      L+LS+  +      
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRCEIQTI--E 68

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIP---APPTKTRHYLVSKNNLTGEIPSWICNLSSLYI 117
              +   S   TL L+ N +Q       +  +  +  +  + NL       I +L +L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI----I 173
           L+++ N +            + F N +NL  +D+S N +Q      L     + +    +
Sbjct: 129 LNVAHNLIQS------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG- 232
           DL  N  ++           L  L L++N     + +  ++ G   L +  L    F   
Sbjct: 183 DLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNE 240

Query: 233 -NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE 291
            NL          +  +   + R            D +    +      +S   + +   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 292 KIPYILTAVILSSNGFHGEIPTSIANLKGL-------------------QVLSLANNNLE 332
              +    + L +  F       + +LK L                   + L L+ N L 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 333 --GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
             G         T L+ LDLS N     +     GL  LE  +  H+NL   + E + F
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVF 417

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (266), Expect = 1e-24
 Identities = 65/390 (16%), Positives = 117/390 (30%), Gaps = 56/390 (14%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH--PSVFPW 66
              +   K LK L+++ N +  +        ++ N  +L+LS N +          +   
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 67  SSGEFTLDLSSNFLQGPIPAP--PTKTRHYLVSKNNLTGEIPS-WICNLSSLYILDLSDN 123
                +LDLS N +    P      +     +  N  +  +    I  L+ L +  L   
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG---RIPKSLANCAVLEIIDLGNNQI 180
                                NL I +     L      I         +    L +  I
Sbjct: 236 EFRN-EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 181 IDTFP-AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYF 239
                 ++      L+++  +   F               L+ +  ++N           
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFP--------TLKLKSLKRLTFTSNKGG-------- 338

Query: 240 QCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYI 296
              NA   V+   L ++   RN LS      F G      +  T                
Sbjct: 339 ---NAFSEVDLPSLEFLDLSRNGLS------FKGCCSQSDFGTT---------------S 374

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP-SCFGDLTKLESLDLSNNWF 355
           L  + LS NG    + ++   L+ L+ L   ++NL+     S F  L  L  LD+S+   
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 356 SGQIPQQLTGLTFLEFFNVSHNNLTGPIPE 385
                    GL+ LE   ++ N+       
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.5 bits (243), Expect = 8e-22
 Identities = 78/429 (18%), Positives = 135/429 (31%), Gaps = 78/429 (18%)

Query: 6   FEFPNFLKQQKHLKALDLSSNKLHGNIPKWL--LNPSMQNFSYLNLSKNSLTGFDQHPSV 63
           F+ P +     +L+ LDLSSNK+       L  L+        L+LS N +      P  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ--PGA 196

Query: 64  FPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL----------VSKNNLTGEIPSWICNLS 113
           F        L L +NF    +     +    L           ++ NL     S +  L 
Sbjct: 197 FKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII 173
           +L I +     L   L     +  D F   +N+    +    ++ R+    +     + +
Sbjct: 256 NLTIEEFRLAYLDYYLD----DIIDLFNCLTNVSSFSLVSVTIE-RVK-DFSYNFGWQHL 309

Query: 174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN 233
           +L N +        L +L  L     +  N   E+         P L  +DLS N  +  
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-------DLPSLEFLDLSRNGLS-- 360

Query: 234 LPSKYFQCWNAMKFVNASQLRYMR---NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSY 290
                F+   +      + L+Y+    N + +             +  L           
Sbjct: 361 -----FKGCCSQSDFGTTSLKYLDLSFNGVIT---------MSSNFLGLEQ--------- 397

Query: 291 EKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLD 349
                 L  +    +        S+  +L+ L  L +++ +        F  L+ LE L 
Sbjct: 398 ------LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 350 LSNNWFSGQIPQQ-LTGLTFLEFFNVSHNNLTGPIPEA--------------NQFPTFDS 394
           ++ N F         T L  L F ++S   L    P A              NQ  +   
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 395 SSFDGNSGL 403
             FD  + L
Sbjct: 512 GIFDRLTSL 520

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 61/384 (15%), Positives = 118/384 (30%), Gaps = 74/384 (19%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPS-MQNFSYLNLSKNSLTGFD---- 58
           +L      ++    L+   L   +          + S ++    L + +  L   D    
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 59  QHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYIL 118
               +F   +   +  L S  ++            +L   N   G+ P+    L SL  L
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRL 330

Query: 119 DLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ--GRIPKSLANCAVLEIIDLG 176
             + N             + + ++  +L  +D+S N L   G   +S      L+ +DL 
Sbjct: 331 TFTSNKGGN---------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 177 NNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPS 236
            N +I T  +    L +L+ L  Q +N   ++ E  +      L  +D+S+         
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISH--------- 430

Query: 237 KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYI 296
                    +         + +                                      
Sbjct: 431 ------THTRVAFNGIFNGLSS-------------------------------------- 446

Query: 297 LTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWF 355
           L  + ++ N F       I   L+ L  L L+   LE   P+ F  L+ L+ L++++N  
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 356 SGQIPQQLTGLTFLEFFNVSHNNL 379
                     LT L+   +  N  
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.2 bits (237), Expect = 4e-21
 Identities = 55/321 (17%), Positives = 101/321 (31%), Gaps = 46/321 (14%)

Query: 71  FTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGEL 129
            T           IP   P  T++  +S N L         +   L +LDLS   +   +
Sbjct: 10  ITYQCMELNFYK-IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 130 PRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLG 189
                     + + S+L  + ++ N +Q     + +  + L+ +      +       +G
Sbjct: 68  E------DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 190 TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249
            L  L  L +  N      K  +       L  +DLS+N    ++     +  + M  +N
Sbjct: 122 HLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179

Query: 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG 309
            S L    N ++      F                 + +        L  + L +N    
Sbjct: 180 LS-LDLSLNPMNFIQPGAF-----------------KEIR-------LHKLTLRNNFDSL 214

Query: 310 EIP-TSIANLKGLQVLSLA------NNNLEGHIPSCFGDLTKLESLDL---SNNWFSGQI 359
            +  T I  L GL+V  L         NLE    S    L  L   +      +++   I
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 360 PQQLTGLTFLEFFNVSHNNLT 380
                 LT +  F++    + 
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIE 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 20/235 (8%)

Query: 14  QQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTL 73
           + K LK L  +SNK      +      + +  +L+LS+N L+           ++    L
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 74  DLSSNFLQGPIPAPP--TKTRHYLVSKNNLTGEIPSWI--CNLSSLYILDLSDNNLSGEL 129
           DLS N +           +  H     +NL  ++  +    +L +L  LD+S  +     
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VA 436

Query: 130 PRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK-SLANCAVLEIIDLGNNQIIDTFPAWL 188
                  +  F   S+L ++ M+ N  Q             L  +DL   Q+    P   
Sbjct: 437 F------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPS-KYFQCW 242
            +LS L +L + SN          +      L+ + L  N +  + P   Y   W
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDG--IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 13/208 (6%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           + N             L+ LDLS N L         +    +  YL+LS N +       
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---S 389

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV----SKNNLTGEIPSWICNLSSLYI 117
           S F        LD   + L+         +   L+    S  +           LSSL +
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGN 177
           L ++ N+             D F    NL  +D+S   L+   P +  + + L+++++ +
Sbjct: 450 LKMAGNSFQENFL------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 178 NQIIDTFPAWLGTLSELDILVLQSNNFH 205
           NQ+          L+ L  + L +N + 
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 15/122 (12%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           L  + LS          +  +L  L  L L  N ++      F  L+ L+ L       +
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLT-GPIPEA--------------NQFPTFDSSSFDGNS 401
                 +  L  L+  NV+HN +    +PE               N+  +   +      
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 402 GL 403
            +
Sbjct: 174 QM 175

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  106 bits (267), Expect = 7e-25
 Identities = 62/389 (15%), Positives = 134/389 (34%), Gaps = 36/389 (9%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
           RS +    P+ L     +K+LDLS NK+   I    L  +  N   L L  + +      
Sbjct: 13  RSRSFTSIPSGLTA--AMKSLDLSFNKIT-YIGHGDL-RACANLQVLILKSSRINTI--E 66

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPA----PPTKTRHYLVSKNNLTG-EIPSWICNLSSL 115
              F        LDLS N L   + +    P +  ++  +  N      + S   NL++L
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 116 YILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL 175
             L + +     E+ R        F   ++L  +++    L+    +SL +   +  + L
Sbjct: 126 QTLRIGNVETFSEIRR------IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHG-EIKEHKMECGFPKLRIVDLSNNSFTGNL 234
             ++       +   LS +  L L+  N    +     ++     ++ +    +  T   
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 235 PSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIP 294
            ++  +    +  ++  +           F+                  K + ++     
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE-------LGKVETVT----- 287

Query: 295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354
             +  + +       ++ T  + L+ ++ +++ N+ +     S    L  LE LDLS N 
Sbjct: 288 --IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

Query: 355 FSGQIPQQ---LTGLTFLEFFNVSHNNLT 380
              +  +          L+   +S N+L 
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (262), Expect = 3e-24
 Identities = 68/401 (16%), Positives = 128/401 (31%), Gaps = 49/401 (12%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
              L+   +L+ L L S++++  I       S+ +  +L+LS N L+      S F   S
Sbjct: 43  HGDLRACANLQVLILKSSRIN-TIEGDAFY-SLGSLEHLDLSDNHLSSL--SSSWFGPLS 98

Query: 69  GEFTLDLSSNFLQGPIPAPP-----TKTRHYLVSKNNLTGEIPSW-ICNLSSLYILDLSD 122
               L+L  N  Q  +         T  +   +       EI       L+SL  L++  
Sbjct: 99  SLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID 182
            +L           S +  +  ++  + +  +     +       + +  ++L +  +  
Sbjct: 158 LSLR-NYQ------SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

Query: 183 TFPAWLGT--------LSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNL 234
              + L                 VL   +F+  +K  +      ++   D + N   G+ 
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL-GDF 269

Query: 235 PSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIP 294
                   + +  V    +R +      +    +  Y     YSL    K   +   K+ 
Sbjct: 270 NPSESDVVSELGKVETVTIRRL------HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 295 YI----------LTAVILSSNGFHGEI---PTSIANLKGLQVLSLANNNLE--GHIPSCF 339
            +          L  + LS N    E             LQ L L+ N+L          
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 340 GDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
             L  L SLD+S N F   +P        + F N+S   + 
Sbjct: 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 65/393 (16%), Positives = 118/393 (30%), Gaps = 46/393 (11%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
                    L  L++ +  L     + L   S+++  +L L  +               S
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSL--KSIRDIHHLTLHLSESAFLL--EIFADILS 196

Query: 69  GEFTLDLSSNFLQG-PIPAPPTKTRHYLVSKNNLTG------------EIPSWICNLSSL 115
               L+L    L        P       + K    G            ++  +I  LS +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 116 YILDLSDNNLSGELPRCLGNFSD-TFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIID 174
              D + N L    P      S+   +    +  + +    L   +    +    ++ I 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 175 LGNNQII---DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC--GFPKLRIVDLSNNS 229
           + N+++     +F   L +L  LD+    S N   E       C   +P L+ + LS N 
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDL----SENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 230 FTGNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQ 286
              ++             +    L  +   RN              P     L +S+ G 
Sbjct: 373 LR-SMQK------TGEILLTLKNLTSLDISRNTFHP-MPDSCQW--PEKMRFLNLSSTGI 422

Query: 287 MLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE 346
            +    IP  L  + +S+N            L  LQ L ++ N L+  +P        L 
Sbjct: 423 RVVKTCIPQTLEVLDVSNNNL-DSFS---LFLPRLQELYISRNKLK-TLPDASL-FPVLL 476

Query: 347 SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379
            + +S N            LT L+   +  N  
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.2 bits (237), Expect = 5e-21
 Identities = 65/430 (15%), Positives = 124/430 (28%), Gaps = 81/430 (18%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
            +      +L+ L + + +    I +      + + + L +   SL  +           
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSLRNYQ--SQSLKSIR 172

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTR--HYLVSKNNLTGEIPSWI------------CNLSS 114
               L L  +     +           YL  ++                           
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 115 LYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIID 174
             + D S N L   L   L      F + +  G+ D + +               +  + 
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 175 LGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGF----PKLRIVDLSNNSF 230
           +    +          L ++  + ++++          + C F      L  +DLS N  
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVF------LVPCSFSQHLKSLEFLDLSENLM 346

Query: 231 TGNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLT-MSNKGQ 286
                       N+        L+ +   +N L S                L  + N   
Sbjct: 347 VEEY------LKNSACKGAWPSLQTLVLSQNHLRS---------MQKTGEILLTLKN--- 388

Query: 287 MLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE 346
                     LT++ +S N FH  +P S    + ++ L+L++  +   + +C      LE
Sbjct: 389 ----------LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLE 434

Query: 347 SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-------------NQFPTFD 393
            LD+SNN         L  L  L    +S N L   +P+A             NQ  +  
Sbjct: 435 VLDVSNNNLD-SFSLFLPRLQEL---YISRNKLKT-LPDASLFPVLLVMKISRNQLKSVP 489

Query: 394 SSSFDGNSGL 403
              FD  + L
Sbjct: 490 DGIFDRLTSL 499

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 47/355 (13%), Positives = 107/355 (30%), Gaps = 54/355 (15%)

Query: 68  SGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS 126
                 D  S      IP+      +   +S N +T      +   ++L +L L  + ++
Sbjct: 5   DASGVCDGRSRSFTS-IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 127 GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID-TFP 185
             +        D F +  +L  +D+S N L           + L+ ++L  N        
Sbjct: 64  -TIEG------DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 186 AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG------------- 232
           +    L+ L  L + +     EI+      G   L  +++   S                
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 233 ----------NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYF---------- 272
                      L   +    ++++++        R   S     +               
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 273 --PHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG--LQVLSLAN 328
               +   L +      LS  +        +   N    ++ + +  ++   ++ L +  
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 329 NNLEGHIPSCFGDLTKLESLDLSNN---WFSGQIPQQLTGLTFLEFFNVSHNNLT 380
             L   + + +  L K++ + + N+          Q L  L FL   ++S N + 
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL---DLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 29/230 (12%)

Query: 8   FPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWS 67
                   + +K + + ++K+   +P       +++  +L+LS+N +       S    +
Sbjct: 302 LSTVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 68  SGE-FTLDLSSNFLQGPIPAPPTKTRH-----YL-VSKNNLTGEIPSWICNLSSLYILDL 120
                TL LS N L+  +               L +S+N     +P        +  L+L
Sbjct: 360 WPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI 180
           S   +   +  C+            L ++D+S+N L       L     L+ + +  N++
Sbjct: 418 SSTGIR-VVKTCI---------PQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKL 463

Query: 181 IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230
                A L     L ++ +  N     + +   +     L+ + L  N +
Sbjct: 464 KTLPDASL--FPVLLVMKISRNQLK-SVPDGIFD-RLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 20/208 (9%)

Query: 2   SCNLFEFP-NFLKQQKHLKALDLSSNKL-HGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQ 59
           +  +F  P +F +  K L+ LDLS N +    +       +  +   L LS+N L    +
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 60  HPSVFPWSSGEFTLDLSSNFLQ--GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYI 117
              +        +LD+S N           P K R   +S   +   + +  C   +L +
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEV 435

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGN 177
           LD+S+NNL               +    L  + +S N L+  +P + +   VL ++ +  
Sbjct: 436 LDVSNNNLD-----------SFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISR 482

Query: 178 NQIIDTFPAWLGTLSELDILVLQSNNFH 205
           NQ+          L+ L  + L +N + 
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 40/279 (14%), Positives = 78/279 (27%), Gaps = 91/279 (32%)

Query: 110 CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169
            +  +  + D    + +  +P  L          + +  +D+S N +       L  CA 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGLT---------AAMKSLDLSFNKITYIGHGDLRACAN 51

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
           L+++ L +++I           + ++     S                  L  +DLS+N 
Sbjct: 52  LQVLILKSSRI-----------NTIEGDAFYSL---------------GSLEHLDLSDNH 85

Query: 230 FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLS 289
            + +L S +        F   S L+Y+                                 
Sbjct: 86  LS-SLSSSW--------FGPLSSLKYLN-------------------------------- 104

Query: 290 YEKIPYILTAVILSSNGFHG-EIPTSIANLKGLQVLSLANNNLEGHIP-SCFGDLTKLES 347
                       L  N +    + +   NL  LQ L + N      I    F  LT L  
Sbjct: 105 ------------LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 348 LDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
           L++          Q L  +  +    +  +     +   
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 293 IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN 352
           +   + ++ LS N         +     LQVL L ++ +       F  L  LE LDLS+
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 353 NWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFP 390
           N  S         L+ L++ N+  N     +   + FP
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFP 120

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (261), Expect = 9e-25
 Identities = 63/380 (16%), Positives = 134/380 (35%), Gaps = 76/380 (20%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN---SLTGFDQHPSVFPWSS 68
                      L    +   + +      +++ + L ++     S+ G +   ++     
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQ----EELESITKLVVAGEKVASIQGIEYLTNL----- 68

Query: 69  GEFTLDLSSNFLQGPIP-APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127
               L+L+ N +    P +   K  +  +  N +T    S + NL++L  L L+++N+S 
Sbjct: 69  --EYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD 124

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
                         N + +  +++  N         L+N   L  + +  +++ D  P  
Sbjct: 125 ---------ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP-- 172

Query: 188 LGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF 247
           +  L++L  L L  N     I++         L       N  T   P            
Sbjct: 173 IANLTDLYSLSLNYNQ----IEDISPLASLTSLHYFTAYVNQITDITP-----------V 217

Query: 248 VNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSS 304
            N ++L  +    N ++                   +S              LT + + +
Sbjct: 218 ANMTRLNSLKIGNNKITDLSPLA------------NLSQ-------------LTWLEIGT 252

Query: 305 NGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLT 364
           N        ++ +L  L++L++ +N +     S   +L++L SL L+NN    +  + + 
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 365 GLTFLEFFNVSHNNLTGPIP 384
           GLT L    +S N++T   P
Sbjct: 309 GLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.5 bits (236), Expect = 2e-21
 Identities = 57/356 (16%), Positives = 131/356 (36%), Gaps = 68/356 (19%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           +         ++   +L+ L+L+ N++    P  L N  +   + L +  N +T      
Sbjct: 52  AGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSN--LVKLTNLYIGTNKIT----DI 103

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYILDL 120
           S     +    L L+ + +    P       + L +  N+   ++   + N++ L  L +
Sbjct: 104 SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTV 162

Query: 121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI 180
           +++ +                N ++L  + +++N ++   P  LA+   L       NQI
Sbjct: 163 TESKVKD---------VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211

Query: 181 IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240
            D  P  +  ++ L+ L + +N     I +        +L  +++  N  + ++ +    
Sbjct: 212 TDITP--VANMTRLNSLKIGNNK----ITDLSPLANLSQLTWLEIGTNQIS-DINA---- 260

Query: 241 CWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYIL 297
                   + ++L+ +    N +S     +          +L+                L
Sbjct: 261 ------VKDLTKLKMLNVGSNQISDISVLN----------NLSQ---------------L 289

Query: 298 TAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN 353
            ++ L++N    E    I  L  L  L L+ N++    P     L+K++S D +N 
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.3 bits (212), Expect = 2e-18
 Identities = 54/315 (17%), Positives = 110/315 (34%), Gaps = 64/315 (20%)

Query: 72  TLDLSSNFLQGPIP-APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP 130
           TL      +    P A   +    ++ K ++T  +      L S+  L ++   ++  + 
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ 60

Query: 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGT 190
             +          +NL  ++++ N +    P  L+N   L  + +G N+I  T  + L  
Sbjct: 61  -GIEYL-------TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQN 108

Query: 191 LSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNA 250
           L+ L  L L  +N    I +        K+  ++L  N    +L              N 
Sbjct: 109 LTNLRELYLNEDN----ISDISPLANLTKMYSLNLGANHNLSDLSP----------LSNM 154

Query: 251 SQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGF 307
           + L Y+    + +                    +++             L ++ L+ N  
Sbjct: 155 TGLNYLTVTESKVKDVTPIA------------NLTD-------------LYSLSLNYNQI 189

Query: 308 HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT 367
               P  +A+L  L   +   N +    P    ++T+L SL + NN  +   P  L  L+
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS 243

Query: 368 FLEFFNVSHNNLTGP 382
            L +  +  N ++  
Sbjct: 244 QLTWLEIGTNQISDI 258

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 4e-13
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 22/193 (11%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF 71
           +     L +L L+ N++    P      S+ +  Y     N +T      +     +   
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQITDI----TPVANMTRLN 224

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP 130
           +L + +N +    P        +L +  N ++  I + + +L+ L +L++  N +S    
Sbjct: 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-INA-VKDLTKLKMLNVGSNQISD--- 279

Query: 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGT 190
                      N S L  + +++N L     + +     L  + L  N I D  P  L +
Sbjct: 280 ------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331

Query: 191 LSELDILVLQSNN 203
           LS++D     +  
Sbjct: 332 LSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 9e-12
 Identities = 40/276 (14%), Positives = 85/276 (30%), Gaps = 64/276 (23%)

Query: 112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLE 171
            ++L  L    N +         + +             +    +   +         + 
Sbjct: 2   AATLATLPAPINQIFP-----DADLA-------EGIRAVLQKASVTDVVT--QEELESIT 47

Query: 172 IIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231
            + +   ++       +  L+ L+ L L  N     I +        KL  + +  N  T
Sbjct: 48  KLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ----ITDISPLSNLVKLTNLYIGTNKIT 101

Query: 232 GNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQML 288
            ++ +            N + LR +    + +S                   ++      
Sbjct: 102 -DISA----------LQNLTNLRELYLNEDNISDISPLA------------NLTK----- 133

Query: 289 SYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL 348
                   + ++ L +N       + ++N+ GL  L++  + ++   P    +LT L SL
Sbjct: 134 --------MYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 349 DLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP 384
            L+ N      P  L  LT L +F    N +T   P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 5e-10
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 26/183 (14%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT---GFD 58
           + N  E  + L     L       N++    P   +  +M   + L +  N +T      
Sbjct: 185 NYNQIEDISPLASLTSLHYFTAYVNQITDITP---VA-NMTRLNSLKIGNNKITDLSPLA 240

Query: 59  QHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYI 117
               +         L++ +N +              L V  N ++ +I   + NLS L  
Sbjct: 241 NLSQLT-------WLEIGTNQISDINAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNS 291

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGN 177
           L L++N L  E    +G  +       NL  + +S N +    P  LA+ + ++  D  N
Sbjct: 292 LFLNNNQLGNEDMEVIGGLT-------NLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342

Query: 178 NQI 180
             I
Sbjct: 343 QVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           L  + L+ N      P  ++NL  L  L +  N +     S   +LT L  L L+ +  S
Sbjct: 68  LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNIS 123

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLTGPIPE 385
              P  L  LT +   N+  N+    +  
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 24/150 (16%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT---GFDQHPSVFPWSS 68
           +     L +L + +NK+    P  L N  +   ++L +  N ++          +     
Sbjct: 217 VANMTRLNSLKIGNNKITDLSP--LAN--LSQLTWLEIGTNQISDINAVKDLTKLK---- 268

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127
               L++ SN +            + L ++ N L  E    I  L++L  L LS N+++ 
Sbjct: 269 ---MLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157
             P           + S +   D ++ +++
Sbjct: 326 IRP---------LASLSKMDSADFANQVIK 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (258), Expect = 7e-24
 Identities = 79/402 (19%), Positives = 133/402 (33%), Gaps = 66/402 (16%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           S N       LK    L  + +++N++    P      ++ N + L L  N +T      
Sbjct: 76  SNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQIT----DI 127

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
                 +    L+LSSN +          +   L   N +T   P  + NL++L  LD+S
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDIS 185

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181
            N +S      +   +      +NL  +  ++N +    P  L     L+ + L  NQ+ 
Sbjct: 186 SNKVSD-----ISVLA----KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234

Query: 182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC 241
           D     L +L+ L  L L +N     I       G  KL  + L  N  +   P      
Sbjct: 235 D--IGTLASLTNLTDLDLANNQ----ISNLAPLSGLTKLTELKLGANQISNISP---LAG 285

Query: 242 WNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVI 301
             A+  +  +      N L                 +L                 LT + 
Sbjct: 286 LTALTNLELN-----ENQLEDISPIS----------NLKN---------------LTYLT 315

Query: 302 LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQ 361
           L  N      P  +++L  LQ L   NN +     S   +LT +  L   +N  S   P 
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 370

Query: 362 QLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
            L  LT +    ++    T          +  ++  +    L
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 67/399 (16%), Positives = 127/399 (31%), Gaps = 90/399 (22%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF 71
                      L    +   + +  L+      + L   +  +   D             
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTDLD----QVTTLQADRLGIKSID--------GVEYL 67

Query: 72  T----LDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLS 126
                ++ S+N L    P         + ++ N +    P  + NL++L  L L +N ++
Sbjct: 68  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125

Query: 127 GELPRCLGNFS---------------DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLE 171
              P  L N +                     ++L  +   + +      K LAN   LE
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD---LKPLANLTTLE 180

Query: 172 IIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231
            +D+ +N++  +  + L  L+ L+ L+  +N     I +         L  + L+ N   
Sbjct: 181 RLDISSNKV--SDISVLAKLTNLESLIATNNQ----ISDITPLGILTNLDELSLNGNQLK 234

Query: 232 GNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQML 288
            ++ +            + + L  +    N +S+                  ++      
Sbjct: 235 -DIGT----------LASLTNLTDLDLANNQISNLAPLS------------GLTK----- 266

Query: 289 SYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL 348
                   LT + L +N      P  +A L  L  L L  N LE   P    +L  L  L
Sbjct: 267 --------LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314

Query: 349 DLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN 387
            L  N  S   P  ++ LT L+     +N ++     AN
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLAN 351

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.3 bits (235), Expect = 7e-21
 Identities = 73/385 (18%), Positives = 130/385 (33%), Gaps = 70/385 (18%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           + N       L    +L  L L +N++    P   L     N + L LS N+++      
Sbjct: 98  NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL----TNLNRLELSSNTISD----I 149

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
           S     +    L   +        A  T      +S N ++    S +  L++L  L  +
Sbjct: 150 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 207

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181
           +N +S   P  LG  +       NL  + ++ N L+     +LA+   L  +DL NNQI 
Sbjct: 208 NNQISDITP--LGILT-------NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256

Query: 182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC 241
           +  P  L  L++L  L L +N          +      L  ++L+ N      P      
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISPLAGL----TALTNLELNENQLEDISP------ 304

Query: 242 WNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILT 298
                  N   L Y+    N +S                  +++              L 
Sbjct: 305 -----ISNLKNLTYLTLYFNNISDISPVS------------SLTK-------------LQ 334

Query: 299 AVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQ 358
            +   +N       +S+ANL  +  LS  +N +    P    +LT++  L L++  ++  
Sbjct: 335 RLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390

Query: 359 IPQQLTGLTFLEFFNVSHNNLTGPI 383
                  ++           L  P 
Sbjct: 391 PVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 72/375 (19%), Positives = 125/375 (33%), Gaps = 81/375 (21%)

Query: 18  LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFT----L 73
           L +  ++ +     I +   + ++       L K ++T           S  +      L
Sbjct: 3   LGSATITQDT---PINQIFTDTALAEKMKTVLGKTNVTDTV--------SQTDLDQVTTL 51

Query: 74  DLSSNFLQGPIP-APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRC 132
                 ++                S N LT   P  + NL+ L  + +++N ++   P  
Sbjct: 52  QADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-- 107

Query: 133 LGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLS 192
           L N        +NL  + + +N +    P  L N   L  ++L +N I D     L  L+
Sbjct: 108 LANL-------TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLT 156

Query: 193 ELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQ 252
            L  L   +      + + K       L  +D+S+N  + ++                + 
Sbjct: 157 SLQQLSFGNQ-----VTDLKPLANLTTLERLDISSNKVS-DISV----------LAKLTN 200

Query: 253 LRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG 309
           L  +    N +S                   ++N             L  + L+ N    
Sbjct: 201 LESLIATNNQISDITPLG------------ILTN-------------LDELSLNGNQL-- 233

Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
           +   ++A+L  L  L LANN +    P     LTKL  L L  N  S   P  L GLT L
Sbjct: 234 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289

Query: 370 EFFNVSHNNLTGPIP 384
               ++ N L    P
Sbjct: 290 TNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.1 bits (206), Expect = 3e-17
 Identities = 63/385 (16%), Positives = 122/385 (31%), Gaps = 72/385 (18%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN--SLTGFDQ 59
             N     + LK   +L  L+LSSN +            + +   L+       L     
Sbjct: 120 FNNQITDIDPLKNLTNLNRLELSSNTISDISAL----SGLTSLQQLSFGNQVTDLKPLAN 175

Query: 60  HPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYIL 118
             ++         LD+SSN +              L  + N ++   P  +  L++L  L
Sbjct: 176 LTTL-------ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 119 DLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNN 178
            L+ N L       +G  +    + +NL  +D+++N +    P  L+    L  + LG N
Sbjct: 227 SLNGNQLKD-----IGTLA----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275

Query: 179 QIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY 238
           QI +  P  L  L+ L  L L  N     +++         L  + L  N+ +   P   
Sbjct: 276 QISNISP--LAGLTALTNLELNENQ----LEDISPISNLKNLTYLTLYFNNISDISP--- 326

Query: 239 FQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMS-NKGQMLSYEKIPYIL 297
                     + ++L+                        L    NK   +S       +
Sbjct: 327 --------VSSLTKLQR-----------------------LFFYNNKVSDVSSLANLTNI 355

Query: 298 TAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSG 357
             +    N      P  +ANL  +  L L +        +   +++   ++         
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI- 412

Query: 358 QIPQQLTGLTFLEFFNVSHNNLTGP 382
             P  ++        +++ N  +  
Sbjct: 413 -APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 56/360 (15%), Positives = 115/360 (31%), Gaps = 72/360 (20%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNP--SMQNFSYLNLSKNSLTGFDQHPSVFPWSSG 69
           L     L+ LD+SSNK+        ++    + N   L  + N ++      +     + 
Sbjct: 173 LANLTTLERLDISSNKVSD------ISVLAKLTNLESLIATNNQISDI----TPLGILTN 222

Query: 70  EFTLDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
              L L+ N L+             L ++ N ++   P  +  L+ L  L L  N +S  
Sbjct: 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188
            P             + L  ++++ N L+   P  ++N   L  + L  N I D  P  +
Sbjct: 281 SP---------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327

Query: 189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV 248
            +L++L  L   +N     + +         +  +   +N  +   P             
Sbjct: 328 SSLTKLQRLFFYNNK----VSDVSSLANLTNINWLSAGHNQISDLTP-----------LA 372

Query: 249 NASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYI--LTAVILSSNG 306
           N +++                         L +++  Q  +   + Y   ++      N 
Sbjct: 373 NLTRITQ-----------------------LGLND--QAWTNAPVNYKANVSIPNTVKNV 407

Query: 307 FHGEI-PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG 365
               I P +I++        +  N             ++  ++      FSG + Q L  
Sbjct: 408 TGALIAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 466

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (252), Expect = 1e-23
 Identities = 42/320 (13%), Positives = 95/320 (29%), Gaps = 46/320 (14%)

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
            L    +    P     ++ + +  +  N          N ++  I   +   L      
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALK-ATAD 73

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
            L + +           +++    L  + P      + L+ + +    ++   P  +   
Sbjct: 74  LLEDATQP-----GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 192 SELDILVLQSNNFH---GEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV 248
           + L+ L L  N        I          +LR + +        LP        + +  
Sbjct: 127 AGLETLTLARNPLRALPASI------ASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 249 NASQLRYMR---NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN 305
               L+ +R     + S          P        ++   + +       L ++ + ++
Sbjct: 181 GLVNLQSLRLEWTGIRS---------LP--------ASIANLQN-------LKSLKIRNS 216

Query: 306 GFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG 365
                +  +I +L  L+ L L       + P  FG    L+ L L +      +P  +  
Sbjct: 217 PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 366 LTFLEFFNVSHNNLTGPIPE 385
           LT LE  ++        +P 
Sbjct: 276 LTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (250), Expect = 2e-23
 Identities = 54/382 (14%), Positives = 99/382 (25%), Gaps = 96/382 (25%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
            L  + + L Q +     D +                  N +   +   +         +
Sbjct: 24  ALRPYHDVLSQWQRHYNADRNRWHSAWRQA---------NSNNPQIETRTGRALKATADL 74

Query: 64  FPWSSGE--FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
              ++      L+L S  L                       + P     LS L  + + 
Sbjct: 75  LEDATQPGRVALELRSVPLP----------------------QFPDQAFRLSHLQHMTID 112

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181
              L  ELP  +  F+        L  + ++ N L+  +P S+A+   L  + +     +
Sbjct: 113 AAGLM-ELPDTMQQFA-------GLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC 241
              P  L +           N                 L+ + L       +LP+     
Sbjct: 164 TELPEPLASTDASGEHQGLVN-----------------LQSLRLEWTGIR-SLPAS---- 201

Query: 242 WNAMKFVNASQLRY---MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILT 298
                  N   L+      + LS+              + L                 L 
Sbjct: 202 -----IANLQNLKSLKIRNSPLSA---------LGPAIHHLPK---------------LE 232

Query: 299 AVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQ 358
            + L         P        L+ L L + +    +P     LT+LE LDL       +
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 359 IPQQLTGLTFLEFFNVSHNNLT 380
           +P  +  L       V  +   
Sbjct: 293 LPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 30/216 (13%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN-------- 52
            +  L E P+ ++Q   L+ L L+ N L   +P  + +  +     L++           
Sbjct: 112 DAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIAS--LNRLRELSIRACPELTELPE 168

Query: 53  SLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPP-----TKTRHYLVSKNNLTGEIPS 107
            L   D         + + +L L    ++     P         +   +  + L+  +  
Sbjct: 169 PLASTDASGEHQGLVNLQ-SLRLEWTGIRSL---PASIANLQNLKSLKIRNSPLS-ALGP 223

Query: 108 WICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSH-NLLQGRIPKSLAN 166
            I +L  L  LDL         P   G  +        L  + +   + L   +P  +  
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRA-------PLKRLILKDCSNLL-TLPLDIHR 275

Query: 167 CAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSN 202
              LE +DL     +   P+ +  L    I+++  +
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 31/195 (15%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPS-------MQNFSYLNLSKNS 53
               L   P  +     L+ L + +      +P+ L +         + N   L L    
Sbjct: 135 ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 54  LTGFDQHPSVFPWSSGEFT----LDLSSNFLQGPIPAPPTKTRH----YLVSKNNLTGEI 105
           +          P S         L + ++ L   +              L     L    
Sbjct: 195 IR-------SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR-NY 245

Query: 106 PSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA 165
           P      + L  L L D +    LP  +          + L  +D+   +   R+P  +A
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRL-------TQLEKLDLRGCVNLSRLPSLIA 298

Query: 166 NCAVLEIIDLGNNQI 180
                 II +  +  
Sbjct: 299 QLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 28/257 (10%), Positives = 61/257 (23%), Gaps = 70/257 (27%)

Query: 133 LGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLS 192
           +G+      + S    +    +         L+        D                 +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SN 56

Query: 193 ELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQ 252
              I               + +   P    ++L +       P + F+  +         
Sbjct: 57  NPQIETRTGRALKATADLLE-DATQPGRVALELRSVPLP-QFPDQAFRLSH--------- 105

Query: 253 LRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP 312
                                                       L  + + + G   E+P
Sbjct: 106 --------------------------------------------LQHMTIDAAGLM-ELP 120

Query: 313 TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP---------QQL 363
            ++    GL+ L+LA N L   +P+    L +L  L +       ++P          + 
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 364 TGLTFLEFFNVSHNNLT 380
            GL  L+   +    + 
Sbjct: 180 QGLVNLQSLRLEWTGIR 196

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (254), Expect = 2e-23
 Identities = 52/393 (13%), Positives = 116/393 (29%), Gaps = 34/393 (8%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
              L     L+ L+LSSN L+          +++    L+L+ N +      PS+     
Sbjct: 51  AADLAPFTKLELLNLSSNVLY-ETLDLESLSTLR---TLDLNNNYVQELLVGPSI----- 101

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
              TL  ++N +     +     ++  ++ N +T          S +  LDL  N +   
Sbjct: 102 --ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188
                 NF++   +   L  +++ +N +   +       A L+ +DL +N+ +       
Sbjct: 160 ------NFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNK-LAFMGPEF 210

Query: 189 GTLSELDILVLQSNNFH---GEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAM 245
            + + +  + L++N        ++          L   DL  N F       +F     +
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALR------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 246 KFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN 305
           + V    ++ +        +    G+  +  Y               +     A++    
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGH--YGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 306 GFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP---QQ 362
                +     N    + +          I           +L+        Q+    + 
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 363 LTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSS 395
              L       V    L     E +      + 
Sbjct: 383 HAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.8 bits (241), Expect = 1e-21
 Identities = 48/283 (16%), Positives = 98/283 (34%), Gaps = 41/283 (14%)

Query: 111 NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVL 170
           N +   I  ++D++L  +        +    +  N+  +D+S N L       LA    L
Sbjct: 8   NGNRYKIEKVTDSSLK-QAL------ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230
           E+++L +N + +T    L +LS L  L L +N    E+         P +  +  +NN+ 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG------PSIETLHAANNNI 111

Query: 231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM----SNKGQ 286
           +  +     Q            +    N ++     D           +       N+  
Sbjct: 112 S-RVSCSRGQ--------GKKNIYLANNKITMLRDLDEGC-----RSRVQYLDLKLNEID 157

Query: 287 MLSYEKIPYILTAV---ILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
            +++ ++      +    L  N  + ++   +     L+ L L++N L   +   F    
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
            +  + L NN     I + L     LE F++  N         
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.1 bits (226), Expect = 8e-20
 Identities = 58/358 (16%), Positives = 108/358 (30%), Gaps = 76/358 (21%)

Query: 37  LNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV 96
           +  +   +    ++ +SL       S+   +     LDLS                    
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQAL--ASLRQSAWNVKELDLSG------------------- 43

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
             N L+    + +   + L +L+LS N L  E             + S L  +D+++N +
Sbjct: 44  --NPLSQISAADLAPFTKLELLNLSSNVLY-ETL--------DLESLSTLRTLDLNNNYV 92

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
           Q      L     +E +   NN  I               + L +N     +++      
Sbjct: 93  Q-----ELLVGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKIT-MLRDLDE-GC 142

Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYY 276
             +++ +DL  N       ++     + ++ +N        NF+                
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ-----YNFIYD---------VKG-- 186

Query: 277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336
             +  +              L  + LSSN     +     +  G+  +SL NN L   I 
Sbjct: 187 -QVVFAK-------------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 337 SCFGDLTKLESLDLSNN-WFSGQIPQQLTGLTFLEFFNVSHN-NLTGPIPEANQFPTF 392
                   LE  DL  N +  G +    +    ++         LTG   E    PT 
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.1 bits (195), Expect = 6e-16
 Identities = 42/254 (16%), Positives = 81/254 (31%), Gaps = 49/254 (19%)

Query: 136 FSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELD 195
             +   NG+   I  ++ + L+  +     +   ++ +DL  N +     A L   ++L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 196 ILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT--GNLPSKYFQCWNAMKFVNASQL 253
           +L L SN     + E         LR +DL+NN        PS        ++ ++A+  
Sbjct: 62  LLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQELLVGPS--------IETLHAA-- 107

Query: 254 RYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT 313
               N +S        G                             + L++N        
Sbjct: 108 ---NNNISRVSCSRGQG--------------------------KKNIYLANNKITMLRDL 138

Query: 314 SIANLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFF 372
                  +Q L L  N ++  +          LE L+L  N+    +         L+  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTL 196

Query: 373 NVSHNNLTGPIPEA 386
           ++S N L   +   
Sbjct: 197 DLSSNKLAF-MGPE 209

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 33/248 (13%), Positives = 66/248 (26%), Gaps = 40/248 (16%)

Query: 6   FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFP 65
             F         L+ L+L  N ++ ++   ++   ++    L+LS N L         F 
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLK---TLDLSSNKLAFM---GPEFQ 211

Query: 66  WSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
            ++G   + L +N L                        I   +    +L   DL  N  
Sbjct: 212 SAAGVTWISLRNNKLV----------------------LIEKALRFSQNLEHFDLRGNGF 249

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP 185
                R             N  +  ++   ++    ++   C V  +   G     D   
Sbjct: 250 HCGTLRDF--------FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 186 AWLGTLSELDILVLQSNNFHGEIKE--HKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWN 243
            +   L  L        +  G   E          + R +D     +   +  +      
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQ 360

Query: 244 AMKFVNAS 251
           A   +   
Sbjct: 361 AKITLEQK 368

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 28/201 (13%), Positives = 52/201 (25%), Gaps = 8/201 (3%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
            L       +    +  + L +NKL   I K L     QN  + +L  N           
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF--SQNLEHFDLRGNGFHC-GTLRDF 257

Query: 64  FPWSSGEFTLDLSSN-FLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
           F  +    T+   +   L G      T                  +   L +L   + + 
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID 182
            +  G              N +    ID      +  I +          ++     + +
Sbjct: 318 LSGQGSETE---RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374

Query: 183 TFPAWLGTLSELDILVLQSNN 203
                    +ELD  + Q+  
Sbjct: 375 QVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 19/211 (9%), Positives = 52/211 (24%), Gaps = 20/211 (9%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
           R+  L      L+  ++L+  DL  N  H    +   + + +      ++K ++      
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV---QTVAKQTVKKLTGQ 278

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKN-------NLTGEIPSWICNLS 113
                  +        +   +        +       ++       + T  +     N +
Sbjct: 279 N--EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336

Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII 173
               +D         +           +       ++     L  ++       A L+  
Sbjct: 337 RQREIDALKEQYR-TVID------QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNF 204
                  I+         S L +L      +
Sbjct: 390 LQQAVGQIE-LQHATEEQSPLQLLRAIVKRY 419

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (253), Expect = 4e-23
 Identities = 71/352 (20%), Positives = 116/352 (32%), Gaps = 69/352 (19%)

Query: 43  NFSYLNLSKNSLTGFDQHPSVFPWSSGEF--TLDLSSNFLQGPIPAPPTKTRHYLVSKNN 100
             + LN+ ++ LT         P        TL +  N L   +PA P + R   VS N 
Sbjct: 41  GNAVLNVGESGLT-------TLPDCLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQ 92

Query: 101 LTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI 160
           LT  +P     L  L I      +L   LP             S L  + +  N L   +
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLP-ALP-------------SGLCKLWIFGNQLT-SL 136

Query: 161 PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKL 220
           P        L+ + + +NQ + + PA    L +L       NN    +           L
Sbjct: 137 PVLPPG---LQELSVSDNQ-LASLPALPSELCKLWA----YNNQLTSLPM-----LPSGL 183

Query: 221 RIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLT 280
           + + +S+N    +LP+               +L    N L+S          P     L 
Sbjct: 184 QELSVSDNQLA-SLPT---------LPSELYKLWAYNNRLTS---------LPALPSGLK 224

Query: 281 ----MSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336
                 N+   L     P  L  +++S N     +P   +    L  LS+  N L   +P
Sbjct: 225 ELIVSGNRLTSLPVL--PSELKELMVSGNRL-TSLPMLPSG---LLSLSVYRNQLT-RLP 277

Query: 337 SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQ 388
                L+   +++L  N  S +  Q L  +T    ++            A +
Sbjct: 278 ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 60/372 (16%), Positives = 111/372 (29%), Gaps = 87/372 (23%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFT-LD 74
                L++  + L   +P  L      + + L +  N+LT     P        E   L+
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA----HITTLVIPDNNLTSLPALP-------PELRTLE 87

Query: 75  LSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLG 134
           +S N L   +P  P       +  N LT  +P+    L     L +  N L+  LP    
Sbjct: 88  VSGNQLTS-LPVLPPGLLELSIFSNPLT-HLPALPSGLCK---LWIFGNQLT-SLPVLPP 141

Query: 135 NFSDTFMNGSNLGII----------DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTF 184
              +  ++ + L  +             +N L   +P   +    L+ + + +NQ+  + 
Sbjct: 142 GLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SL 196

Query: 185 PAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNA 244
           P     L +L     +  +                L+ + +S N  T +LP         
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALP---------SGLKELIVSGNRLT-SLPV-------- 238

Query: 245 MKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVI 301
                 S+L+ +    N L+S          P        S              L ++ 
Sbjct: 239 ----LPSELKELMVSGNRLTS---------LPM-----LPSG-------------LLSLS 267

Query: 302 LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQ 361
           +  N     +P S+ +L     ++L  N L         ++T           F      
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 362 QLTGLTFLEFFN 373
                  L    
Sbjct: 327 APRETRALHLAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.6 bits (217), Expect = 1e-18
 Identities = 58/299 (19%), Positives = 101/299 (33%), Gaps = 76/299 (25%)

Query: 109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168
            C  +   +L++ ++ L+  LP CL           ++  + +  N L   +P       
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCLPA---------HITTLVIPDNNLT-SLPALPPE-- 82

Query: 169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNN 228
            L  +++  NQ+  + P     L EL I      +                L  + +  N
Sbjct: 83  -LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP---------SGLCKLWIFGN 131

Query: 229 SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLT----MSNK 284
             T +LP                +L    N L+S          P     L      +N+
Sbjct: 132 QLT-SLPVL---------PPGLQELSVSDNQLAS---------LPALPSELCKLWAYNNQ 172

Query: 285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLK-----------------GLQVLSLA 327
              L     P  L  + +S N     +PT  + L                  GL+ L ++
Sbjct: 173 LTSLPML--PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVS 229

Query: 328 NNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
            N L   +P      ++L+ L +S N  +  +P   +GL  L   +V  N LT  +PE+
Sbjct: 230 GNRLT-SLPV---LPSELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLTR-LPES 279

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.2 bits (195), Expect = 7e-16
 Identities = 42/263 (15%), Positives = 71/263 (26%), Gaps = 50/263 (19%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPK----WLLN-------PSMQNFSYLNL 49
               L   P        L         L          W+                 L++
Sbjct: 89  SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSV 148

Query: 50  SKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWI 109
           S N L      PS          L   +N L   +P  P+  +   VS N L   +P+  
Sbjct: 149 SDNQLASLPALPS------ELCKLWAYNNQLTS-LPMLPSGLQELSVSDNQLA-SLPTLP 200

Query: 110 CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169
             L  L+  +   N L+  LP               L  + +S N L   +P   +    
Sbjct: 201 SELYKLWAYN---NRLT-SLPALPSG----------LKELIVSGNRLT-SLPVLPSE--- 242

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHG---EIKEHKMECGFPKLRIVDLS 226
           L+ + +  N++  + P     L  L    +  N        +              V+L 
Sbjct: 243 LKELMVSGNRL-TSLPMLPSGLLSLS---VYRNQLTRLPESL------IHLSSETTVNLE 292

Query: 227 NNSFTGNLPSKYFQCWNAMKFVN 249
            N  +        +  +A  +  
Sbjct: 293 GNPLSERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 44/225 (19%), Positives = 70/225 (31%), Gaps = 46/225 (20%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
               L   P        L+ L +S N+L  ++P             L    N LT     
Sbjct: 129 FGNQLTSLPVLPPG---LQELSVSDNQL-ASLPALP-----SELCKLWAYNNQLTSLPML 179

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYI--- 117
           PS      G   L +S N L   +P  P++        N LT  +P+    L  L +   
Sbjct: 180 PS------GLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGN 231

Query: 118 --------------LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS 163
                         L +S N L+  LP               L  + +  N L  R+P+S
Sbjct: 232 RLTSLPVLPSELKELMVSGNRLT-SLPMLPSG----------LLSLSVYRNQLT-RLPES 279

Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEI 208
           L + +    ++L  N + +     L  ++           F    
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 43/207 (20%), Positives = 61/207 (29%), Gaps = 32/207 (15%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
              L   P    +   L  L   +N+L        L         L +S N LT     P
Sbjct: 190 DNQLASLPTLPSE---LYKLWAYNNRLTS------LPALPSGLKELIVSGNRLTSLPVLP 240

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
           S          L +S N L   +P  P+      V +N LT  +P  + +LSS   ++L 
Sbjct: 241 SELKE------LMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 122 DNNLSGELPRCLG-------------NFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168
            N LS E                      D     +      +        +P      A
Sbjct: 293 GNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351

Query: 169 VLEIID-LGNNQIIDTFPAWLGTLSEL 194
             +     G     D F  +L  LSE 
Sbjct: 352 PADRWHMFGQEDNADAFSLFLDRLSET 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 63/366 (17%), Positives = 121/366 (33%), Gaps = 80/366 (21%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
            + K +   ++ +   +P  LL+ S +    LNL+   +   D     F ++     L +
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLD-SFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYM 100

Query: 76  SSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWI-CNLSSLYILDLSDNNLSGELPRCLG 134
             N ++                       +P  +  N+  L +L L  N+LS  LPR   
Sbjct: 101 GFNAIR----------------------YLPPHVFQNVPLLTVLVLERNDLS-SLPR--- 134

Query: 135 NFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSEL 194
                F N   L  + MS+N L+     +      L+ + L +N++     + + +L   
Sbjct: 135 ---GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191

Query: 195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLR 254
           ++    S N    +           +  +D S+NS    +                + L+
Sbjct: 192 NV----SYNLLSTLAIP------IAVEELDASHNSIN-VVRGPVNV--------ELTILK 232

Query: 255 YMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTS 314
              N L+                +                  L  V LS N     +   
Sbjct: 233 LQHNNLTDTAWLL----------NYPG---------------LVEVDLSYNELEKIMYHP 267

Query: 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV 374
              ++ L+ L ++NN L   +      +  L+ LDLS+N     + +       LE   +
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 375 SHNNLT 380
            HN++ 
Sbjct: 326 DHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 78/403 (19%), Positives = 123/403 (30%), Gaps = 90/403 (22%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
              L   + ++ L+L+  ++   I  +           L +  N++      P VF    
Sbjct: 62  AALLDSFRQVELLNLNDLQIE-EIDTYAFA-YAHTIQKLYMGFNAIRYLP--PHVFQNVP 117

Query: 69  GEFTLDLSSN---FLQGPIPAPPTKTRHYLVSKNNLTGEIPSWI-CNLSSLYILDLSDNN 124
               L L  N    L   I     K     +S NNL   I        +SL  L LS N 
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176

Query: 125 LSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTF 184
           L+  +   L           +L   ++S+NLL      +LA    +E +D  +N  I+  
Sbjct: 177 LT-HVD--LSLI-------PSLFHANVSYNLLS-----TLAIPIAVEELDASHNS-INVV 220

Query: 185 PAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNA 244
                   EL IL LQ NN    + +      +P L  VDLS N     +    F     
Sbjct: 221 RG--PVNVELTILKLQHNN----LTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFV---- 269

Query: 245 MKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSS 304
                  +L  +                                             +S+
Sbjct: 270 ----KMQRLERLY--------------------------------------------ISN 281

Query: 305 NGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLT 364
           N     +      +  L+VL L++N+L  H+        +LE+L L +N           
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHH 339

Query: 365 GLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP 407
            L  L    +SHN+          F      + D     C   
Sbjct: 340 TLKNL---TLSHNDWD-CNSLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 47/277 (16%), Positives = 87/277 (31%), Gaps = 68/277 (24%)

Query: 106 PSWICNLSSL-YILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL 164
           P + C  S+L Y     D ++  +       F D  +N  N  I+   ++ ++      L
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLN--NQKIVTFKNSTMRKLPAALL 65

Query: 165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVD 224
            +   +E+++L + QI +           +  L +  N     +  H  +   P L ++ 
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ-NVPLLTVLV 123

Query: 225 LSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNK 284
           L  N  + +LP   F         N  +L  +                            
Sbjct: 124 LERNDLS-SLPRGIFH--------NTPKLTTLS--------------------------- 147

Query: 285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLT 343
                            +S+N     I          LQ L L++N L  H+      + 
Sbjct: 148 -----------------MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186

Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
            L   ++S N  S      L     +E  + SHN++ 
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 27/209 (12%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF 71
           L     ++ LD S N ++  +   +        + L L  N+LT      +      G  
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRGPVN----VELTILKLQHNNLT----DTAWLLNYPGLV 251

Query: 72  TLDLSSNFLQGPIPAPP----TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127
            +DLS N L+  I   P     +     +S N L   +  +   + +L +LDLS N+L  
Sbjct: 252 EVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL- 308

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII-DTFPA 186
            + R    F         L  + + HN +   +   L+    L+ + L +N    ++  A
Sbjct: 309 HVERNQPQF-------DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRA 358

Query: 187 WLGTLSELDILVLQSNNFHGEIKEHKMEC 215
               ++   +     +       EH + C
Sbjct: 359 LFRNVARPAVDDADQHCKIDYQLEHGLCC 387

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 32/154 (20%), Positives = 45/154 (29%), Gaps = 38/154 (24%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
           NL +          L  +DLS N+L   I        MQ    L +S N L   + +   
Sbjct: 237 NLTDTAWL-LNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVALNLYGQ- 292

Query: 64  FPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDN 123
            P  + +  LDLS N L                        +         L  L L  N
Sbjct: 293 -PIPTLK-VLDLSHNHLL----------------------HVERNQPQFDRLENLYLDHN 328

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157
           ++   L         T      L  + +SHN   
Sbjct: 329 SIV-TLK------LSTH---HTLKNLTLSHNDWD 352

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 1e-22
 Identities = 49/283 (17%), Positives = 99/283 (34%), Gaps = 41/283 (14%)

Query: 105 IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL 164
           I     N +   I  ++D++L  +        +    +  N+  +D+S N L       L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QAL------ASLRQSAWNVKELDLSGNPLSQISAADL 54

Query: 165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVD 224
           A    LE+++L +N + +T    L +LS L  L L +N    E+         P +  + 
Sbjct: 55  APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG------PSIETLH 105

Query: 225 LSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM--- 281
            +NN+ +  +     Q            +    N ++     D           +     
Sbjct: 106 AANNNIS-RVSCSRGQ--------GKKNIYLANNKITMLRDLDEGC-----RSRVQYLDL 151

Query: 282 -SNKGQMLSYEKIPYILTAV---ILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPS 337
             N+   +++ ++      +    L  N  + ++   +     L+ L L++N L   +  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGP 208

Query: 338 CFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
            F     +  + L NN     I + L     LE F++  N   
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 60/312 (19%), Positives = 109/312 (34%), Gaps = 45/312 (14%)

Query: 96  VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL 155
           V+ ++L   + S   +  ++  LDLS N LS ++              + L ++++S N+
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISA------ADLAPFTKLELLNLSSNV 69

Query: 156 LQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC 215
           L       L + + L  +DL NN + +     L     ++ L   +NN    +   +   
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR--- 118

Query: 216 GFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHY 275
                + + L+NN  T  L      C + +++++        N + +    +        
Sbjct: 119 -GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLK-----LNEIDTVNFAELAASSD-- 169

Query: 276 YYSLTMSNKGQMLSYEKIPYI--------LTAVILSSNGFHGEIPTSIANLKGLQVLSLA 327
             +L   N    L Y  I  +        L  + LSSN     +     +  G+  +SL 
Sbjct: 170 --TLEHLN----LQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 328 NNNLEGHIPSCFGDLTKLESLDLSNN-WFSGQIPQQLTGLTFLEFFNVSHN-NLTGPIPE 385
           NN L   I         LE  DL  N +  G +    +    ++         LTG   E
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 386 ANQFPTFDSSSF 397
               PT      
Sbjct: 282 ECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 40/250 (16%), Positives = 90/250 (36%), Gaps = 31/250 (12%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
              L     L+ L+LSSN L+          +++    L+L+ N +      PS+     
Sbjct: 51  AADLAPFTKLELLNLSSNVLY-ETLDLESLSTLR---TLDLNNNYVQELLVGPSI----- 101

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127
              TL  ++N +   +     + +  + ++ N +T          S +  LDL  N +  
Sbjct: 102 --ETLHAANNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID- 157

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
            +      F++   +   L  +++ +N +   +       A L+ +DL +N+ +      
Sbjct: 158 TVN-----FAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNK-LAFMGPE 209

Query: 188 LGTLSELDILVLQSNNFH---GEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNA 244
             + + +  + L++N        ++          L   DL  N F       +F     
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALR------FSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 245 MKFVNASQLR 254
           ++ V    ++
Sbjct: 264 VQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 25/218 (11%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
              K   ++ + L       L      N   L+LS N L+      +     +    L+L
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQS-AWNVKELDLSGNPLSQI--SAADLAPFTKLELLNL 65

Query: 76  SSNFLQGPIPAPPTKTRHYL-VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLG 134
           SSN L   +      T   L ++ N +  E+        S+  L  ++NN+S  +     
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAANNNIS-RVS---- 115

Query: 135 NFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID-TFPAWLGTLSE 193
                   G     I +++N +           + ++ +DL  N+I    F     +   
Sbjct: 116 -----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 194 LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231
           L+ L LQ N     I + K +  F KL+ +DLS+N   
Sbjct: 171 LEHLNLQYNF----IYDVKGQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 30/227 (13%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
            +  +   ++K LDLS N L       L          LNLS N L        +   S+
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAP--FTKLELLNLSSNVLYET---LDLESLST 81

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
              TLDL++N++Q  +   P+    +  + NN++  +            + L++N ++  
Sbjct: 82  LR-TLDLNNNYVQE-LLVGPSIETLHA-ANNNIS-RVSCSR--GQGKKNIYLANNKIT-M 134

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQG-RIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
           L              S +  +D+  N +      +  A+   LE ++L  N I       
Sbjct: 135 LR------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187

Query: 188 LGTLSELDILVLQSNN---FHGEIKEHKMECGFPKLRIVDLSNNSFT 231
           +   ++L  L L SN       E            +  + L NN   
Sbjct: 188 VV-FAKLKTLDLSSNKLAFMGPEF------QSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 18/74 (24%), Positives = 30/74 (40%)

Query: 311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLE 370
           I     N    ++  + +++L+  + S       ++ LDLS N  S      L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 371 FFNVSHNNLTGPIP 384
             N+S N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 42/200 (21%)

Query: 6   FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFP 65
             F         L+ L+L  N ++ ++   ++   ++    L+LS N L      P    
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLK---TLDLSSNKLAFMG--PEFQS 212

Query: 66  WSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
            +     + L +N L                        I   +    +L   DL  N  
Sbjct: 213 AAGVT-WISLRNNKLV----------------------LIEKALRFSQNLEHFDLRGNGF 249

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP 185
                R             N  +  ++   ++    ++   C V  +   G     D   
Sbjct: 250 HCGTLRDF--------FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED--- 298

Query: 186 AWLGTLSELDILVLQSNNFH 205
             L       ++ L  ++ H
Sbjct: 299 --LPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 4/52 (7%), Positives = 17/52 (32%)

Query: 335 IPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
           I     +  + +   ++++     +         ++  ++S N L+      
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD 53

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.6 bits (248), Expect = 2e-22
 Identities = 57/364 (15%), Positives = 117/364 (32%), Gaps = 60/364 (16%)

Query: 21  LDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL 80
            D+  +    ++     + ++ N   +    +++       ++         L+L+   +
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQI 87

Query: 81  QGPIPA----PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNF 136
           +  I           +   +  N +    P    N+  L +L L  N+LS  LPR     
Sbjct: 88  EE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR----- 140

Query: 137 SDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDI 196
              F N   L  + MS+N L+     +      L+ + L +N++     + + +L   ++
Sbjct: 141 -GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199

Query: 197 LVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYM 256
               S N    +           +  +D S+NS    +                + L+  
Sbjct: 200 ----SYNLLSTLAIP------IAVEELDASHNSIN-VVRGPVNV--------ELTILKLQ 240

Query: 257 RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIA 316
            N L+                                   L  V LS N     +     
Sbjct: 241 HNNLTDTAWLL------------NYPG-------------LVEVDLSYNELEKIMYHPFV 275

Query: 317 NLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376
            ++ L+ L ++NN L   +      +  L+ LDLS+N     + +       LE   + H
Sbjct: 276 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333

Query: 377 NNLT 380
           N++ 
Sbjct: 334 NSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.5 bits (240), Expect = 2e-21
 Identities = 77/403 (19%), Positives = 122/403 (30%), Gaps = 88/403 (21%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
              L   + ++ L+L+  ++   I  +           L +  N++      P VF    
Sbjct: 68  AALLDSFRQVELLNLNDLQIE-EIDTYAFAY-AHTIQKLYMGFNAIRYLP--PHVFQNVP 123

Query: 69  GEFTLDLSSNFLQ---GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
               L L  N L      I     K     +S NNL           +SL  L LS N L
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP 185
           +  +   L           +L   ++S+NLL      +LA    +E +D  +N  I+   
Sbjct: 184 T-HVD--LSLI-------PSLFHANVSYNLLS-----TLAIPIAVEELDASHNS-INVVR 227

Query: 186 AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAM 245
                  EL IL LQ NN    + +      +P L  VDLS N     +    F      
Sbjct: 228 G--PVNVELTILKLQHNN----LTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFV----- 275

Query: 246 KFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN 305
                 +L  +                                             +S+N
Sbjct: 276 ---KMQRLERLY--------------------------------------------ISNN 288

Query: 306 GFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG 365
                +      +  L+VL L++N+L  H+        +LE+L L +N            
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346

Query: 366 LTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPL 408
           L  L    +SHN+          F      + D     C    
Sbjct: 347 LKNL---TLSHNDWD-CNSLRALFRNVARPAVDDADQHCKIDY 385

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 48/284 (16%), Positives = 89/284 (31%), Gaps = 68/284 (23%)

Query: 99  NNLTGEIPSWICNLSSL-YILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157
            N+    P + C  S+L Y     D ++  +       F D  +N  N  I+   ++ ++
Sbjct: 7   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLN--NQKIVTFKNSTMR 64

Query: 158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGF 217
                 L +   +E+++L + QI +           +  L +  N     +  H  +   
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ-NV 122

Query: 218 PKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYY 277
           P L ++ L  N  + +LP   F         N  +L  +                     
Sbjct: 123 PLLTVLVLERNDLS-SLPRGIFH--------NTPKLTTLS-------------------- 153

Query: 278 SLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIP 336
                                   +S+N     I          LQ L L++N L  H+ 
Sbjct: 154 ------------------------MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD 187

Query: 337 SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
                +  L   ++S N  S      L     +E  + SHN++ 
Sbjct: 188 --LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 36/227 (15%), Positives = 63/227 (27%), Gaps = 63/227 (27%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
           NL +          L  +DLS N+L   I        MQ    L +S N L         
Sbjct: 243 NLTDTAWL-LNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLV-------- 291

Query: 64  FPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDN 123
                                                    +  +   + +L +LDLS N
Sbjct: 292 ----------------------------------------ALNLYGQPIPTLKVLDLSHN 311

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII-D 182
           +L   + R    F         L  + + HN +   +   L+    L+ + L +N    +
Sbjct: 312 HLL-HVERNQPQF-------DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 360

Query: 183 TFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
           +  A    ++   +     +       EH + C       +D     
Sbjct: 361 SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQY 407

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 57/320 (17%), Positives = 116/320 (36%), Gaps = 26/320 (8%)

Query: 67  SSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS 126
           S+ +  +              PT+TR   + KN +         +   L  L+L++N +S
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 127 GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA 186
             +          F N  NL  + +  N L+          + L  +D+  N+I+     
Sbjct: 70  -AVE------PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122

Query: 187 WLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMK 246
               L  L  L +  N+    I       G   L  + L   + T ++P++         
Sbjct: 123 MFQDLYNLKSLEVGDNDLV-YISHR-AFSGLNSLEQLTLEKCNLT-SIPTEALS------ 173

Query: 247 FVNASQLRYMR---NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYI-LTAVIL 302
             +   L  +R     +++   + F   +      ++       ++   +  + LT++ +
Sbjct: 174 --HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 303 SSNGFHGEIPT-SIANLKGLQVLSLANNNLEGHIPSC-FGDLTKLESLDLSNNWFSGQIP 360
           +       +P  ++ +L  L+ L+L+ N +   I      +L +L+ + L     +   P
Sbjct: 232 THCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEP 289

Query: 361 QQLTGLTFLEFFNVSHNNLT 380
               GL +L   NVS N LT
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.7 bits (202), Expect = 8e-17
 Identities = 57/346 (16%), Positives = 109/346 (31%), Gaps = 89/346 (25%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
           P       +L+ L L SN+L   IP  +    + N + L++S+N +        +F    
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPLGVFT-GLSNLTKLDISENKIVIL--LDYMFQDLY 128

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPS-WICNLSSLYILDLSDNNLSG 127
              +L++  N L                        I       L+SL  L L   NL+ 
Sbjct: 129 NLKSLEVGDNDLV----------------------YISHRAFSGLNSLEQLTLEKCNLT- 165

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
            +P      ++   +   L ++ + H  +      S      L+++++ +   +DT    
Sbjct: 166 SIP------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 188 LGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF 247
                 L  L +   N    +    +      LR ++LS N  +  +             
Sbjct: 220 CLYGLNLTSLSITHCNLT-AVPYLAVR-HLVYLRFLNLSYNPIS-TIEGSMLH------- 269

Query: 248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGF 307
               +L+ ++                              L   ++  +          F
Sbjct: 270 -ELLRLQEIQ------------------------------LVGGQLAVV------EPYAF 292

Query: 308 HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN 353
            G        L  L+VL+++ N L     S F  +  LE+L L +N
Sbjct: 293 RG--------LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.0 bits (195), Expect = 7e-16
 Identities = 57/313 (18%), Positives = 99/313 (31%), Gaps = 66/313 (21%)

Query: 110 CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169
           C+      +          +P  +          +   ++D+  N ++       A+   
Sbjct: 9   CSAQDR-AVLCHRKRFV-AVPEGIP---------TETRLLDLGKNRIKTLNQDEFASFPH 57

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
           LE ++L  N +    P     L  L  L L+SN     I       G   L  +D+S N 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFT-GLSNLTKLDISENK 115

Query: 230 FTGNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQ 286
               L    FQ        +   L+ +    N L       F G          +++   
Sbjct: 116 IV-ILLDYMFQ--------DLYNLKSLEVGDNDLVYISHRAFSG----------LNS--- 153

Query: 287 MLSYEKIPYILTAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLEGHIPSCFGDLTKL 345
                     L  + L        IPT ++++L GL VL L + N+       F  L +L
Sbjct: 154 ----------LEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 346 ESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA---------------NQFP 390
           + L++S+  +   +         L   +++H NLT  +P                 N   
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPIS 261

Query: 391 TFDSSSFDGNSGL 403
           T + S       L
Sbjct: 262 TIEGSMLHELLRL 274

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 40/242 (16%), Positives = 75/242 (30%), Gaps = 18/242 (7%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
           +LK+L++  N L   I     +  + +   L L K +LT             G   L L 
Sbjct: 129 NLKSLEVGDNDLV-YISHRAFSG-LNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRLR 184

Query: 77  SNFLQGPIPA----PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRC 132
              +   I         + +   +S       +        +L  L ++  NL+  +P  
Sbjct: 185 HLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP-- 240

Query: 133 LGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLS 192
                    +   L  +++S+N +       L     L+ I L   Q+    P     L+
Sbjct: 241 ----YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 193 ELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQ 252
            L +L +  N     ++E         L  + L +N    +    +          N  Q
Sbjct: 297 YLRVLNVSGNQLT-TLEESVFH-SVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQ 354

Query: 253 LR 254
             
Sbjct: 355 PT 356

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 72/393 (18%), Positives = 116/393 (29%), Gaps = 101/393 (25%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
           +L E P   +  K L   + +   L    P            YL +S N L      P +
Sbjct: 102 SLTELPELPQSLKSLLVDNNNLKALSDLPP---------LLEYLGVSNNQLEKL---PEL 149

Query: 64  FPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDN 123
              S  +  +D+ +N L+  +P  P          N L  E+P  + NL  L  +   +N
Sbjct: 150 QNSSFLK-IIDVDNNSLKK-LPDLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNN 205

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDT 183
           +L  +LP    +          L  I   +N+L       L N   L  I   NN +  T
Sbjct: 206 SLK-KLPDLPLS----------LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-T 251

Query: 184 FPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWN 243
            P    +L  L++      +                L  +D+S N F+  L         
Sbjct: 252 LPDLPPSLEALNVRDNYLTDLPELP---------QSLTFLDVSENIFS-GLSEL------ 295

Query: 244 AMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS 303
                N   L    N + S                    +             L  + +S
Sbjct: 296 ---PPNLYYLNASSNEIRSLCDL--------------PPS-------------LEELNVS 325

Query: 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQL 363
           +N    E+P     L   + L  + N+L   +P        L+ L +  N    + P   
Sbjct: 326 NNKLI-ELPALPPRL---ERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP 376

Query: 364 TGLTFLEFFN----------------VSHNNLT 380
             +  L   +                V  N L 
Sbjct: 377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 75/365 (20%), Positives = 121/365 (33%), Gaps = 85/365 (23%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
           +    L+L++  L  ++P         +   L  S NSLT     P +          + 
Sbjct: 71  RQAHELELNNLGLS-SLP-----ELPPHLESLVASCNSLTEL---PELPQSLKSLLVDNN 121

Query: 76  SSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGN 135
           +       +   P    +  VS N L  ++P  + N S L I+D+ +N+L  +LP    +
Sbjct: 122 NLK----ALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 136 FSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELD 195
                     L  I   +N L+  +P  L N   L  I   NN +    P    +L  + 
Sbjct: 175 ----------LEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV 221

Query: 196 ILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY 255
                 NN   E+ E       P L  +   NN     LP             +   L  
Sbjct: 222 A----GNNILEELPEL---QNLPFLTTIYADNNLLK-TLPDL---------PPSLEALNV 264

Query: 256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSI 315
             N+L+                              ++P  LT + +S N F   +    
Sbjct: 265 RDNYLTDL---------------------------PELPQSLTFLDVSENIFS-GLSELP 296

Query: 316 ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS 375
            NL     L+ ++N +     S       LE L++SNN    ++P     L  L     S
Sbjct: 297 PNLY---YLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IAS 345

Query: 376 HNNLT 380
            N+L 
Sbjct: 346 FNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 3e-18
 Identities = 72/386 (18%), Positives = 121/386 (31%), Gaps = 113/386 (29%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYL-NLSKNSLTGFDQHPS 62
           NL E P   +  K       + ++   N P           S L +              
Sbjct: 22  NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH------- 74

Query: 63  VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
                     L+L++  L   +P  P      + S N+LT E+P    +L SL + + + 
Sbjct: 75  ---------ELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID 182
             LS +LP               L  + +S+N L+ ++P  L N + L+IID+ NN +  
Sbjct: 124 KALS-DLP-------------PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL-K 166

Query: 183 TFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCW 242
             P    +L  +                                NN     LP       
Sbjct: 167 KLPDLPPSLEFI-----------------------------AAGNNQLE-ELPE------ 190

Query: 243 NAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA 299
                 N   L  +    N L                                 P  L +
Sbjct: 191 ----LQNLPFLTAIYADNNSLKKLPDL---------------------------PLSLES 219

Query: 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQI 359
           ++  +N    E    + NL  L  +   NN L+  +P        LE+L++ +N+ +  +
Sbjct: 220 IVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLT-DL 272

Query: 360 PQQLTGLTFLEFFNVSHNNLTGPIPE 385
           P+    LTFL+      + L+   P 
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 56/352 (15%), Positives = 101/352 (28%), Gaps = 82/352 (23%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
             N  E    L+    L A+   +N L        L     +   +    N L       
Sbjct: 181 GNNQLEELPELQNLPFLTAIYADNNSLKK------LPDLPLSLESIVAGNNILE----EL 230

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
                     T+   +N L+  +P  P       V  N LT ++P    +L+ L + +  
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENI 288

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181
            + LS   P              NL  ++ S N ++  +     +   LE +++ NN++I
Sbjct: 289 FSGLSELPP--------------NLYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI 330

Query: 182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC 241
              PA    L  L      S N   E+ E         L+ + +  N      P      
Sbjct: 331 -ELPALPPRLERLIA----SFNHLAEVPE-----LPQNLKQLHVEYNPLR-EFPDIPESV 379

Query: 242 WNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVI 301
                                                L M++    +     P  L  + 
Sbjct: 380 -----------------------------------EDLRMNSHLAEVPEL--PQNLKQLH 402

Query: 302 LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN 353
           + +N    E P    ++   + L + +  +            KLE     ++
Sbjct: 403 VETNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 39/294 (13%), Positives = 84/294 (28%), Gaps = 86/294 (29%)

Query: 95  LVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMN------GSNLGI 148
           L   +NLT E+P    N+ S      + +      P   G   +  ++            
Sbjct: 17  LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 149 IDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEI 208
           +++++  L   +P+   +   LE +    N +    P    +L                 
Sbjct: 76  LELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLK---------------- 114

Query: 209 KEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDF 268
                      L + + +  + +   P         ++++  S      N L        
Sbjct: 115 ----------SLLVDNNNLKALSDLPPL--------LEYLGVS-----NNQLEKLPEL-- 149

Query: 269 YGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLAN 328
                                       L  + + +N    ++P    +L   + ++  N
Sbjct: 150 ----------------QNSSF-------LKIIDVDNNSLK-KLPDLPPSL---EFIAAGN 182

Query: 329 NNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP 382
           N LE  +P    +L  L ++   NN    ++P     L  +      +N L   
Sbjct: 183 NQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 18/97 (18%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDL-------------T 343
           L   +  S+    E+P    N+K       A +  E + P   G+               
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
           +   L+L+N   S  +P+    L  L     S N+LT
Sbjct: 72  QAHELELNNLGLS-SLPELPPHLESL---VASCNSLT 104

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 7e-18
 Identities = 53/297 (17%), Positives = 96/297 (32%), Gaps = 69/297 (23%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
           ++N     +    C ++    L L+  NLS  LP  L            + +++++ N L
Sbjct: 45  NRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLP---------PQITVLEITQNAL 92

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
              +P+  A+   LE +D  +N++  T P    +L  LD+     NN    + E      
Sbjct: 93  I-SLPELPAS---LEYLDACDNRL-STLPELPASLKHLDV----DNNQLTMLPE-----L 138

Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYY 276
              L  ++  NN  T  LP             +   L    N L+           P   
Sbjct: 139 PALLEYINADNNQLT-MLPEL---------PTSLEVLSVRNNQLTF---------LPE-- 177

Query: 277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQ----VLSLANNNLE 332
                 +             L A+ +S+N     +P         +          N + 
Sbjct: 178 ---LPES-------------LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 333 GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
            HIP     L    ++ L +N  S +I + L+  T    ++      +    + N  
Sbjct: 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 7e-16
 Identities = 47/244 (19%), Positives = 74/244 (30%), Gaps = 29/244 (11%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
               L   P        L+ LD   N+L   +P         +  +L++  N LT   + 
Sbjct: 88  TQNALISLPELPAS---LEYLDACDNRLS-TLP-----ELPASLKHLDVDNNQLTMLPEL 138

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDL 120
           P+          ++  +N L   +P  PT      V  N LT  +P       SL  LD+
Sbjct: 139 PA------LLEYINADNNQLTM-LPELPTSLEVLSVRNNQLT-FLPEL---PESLEALDV 187

Query: 121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI 180
           S N L   LP           +           N +   IP+++ +      I L +N +
Sbjct: 188 STNLLE-SLPAVPVRNHH---SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 181 IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240
                  L   +           F     +           + D     F  N  S   Q
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH----RPLADAVTAWFPENKQSDVSQ 298

Query: 241 CWNA 244
            W+A
Sbjct: 299 IWHA 302

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 2e-15
 Identities = 44/239 (18%), Positives = 84/239 (35%), Gaps = 37/239 (15%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
           ++ +   + +       + N+    + + L+N     FS L L++ +L+     P   P 
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECLIN----QFSELQLNRLNLSSL---PDNLP- 79

Query: 67  SSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS 126
                 L+++ N L   +P  P    +     N L+  +P    +L     LD+ +N L+
Sbjct: 80  -PQITVLEITQNALI-SLPELPASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT 133

Query: 127 GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA 186
             LP               L  I+  +N L   +P+   +   LE++ + NNQ+    P 
Sbjct: 134 -MLPELPA----------LLEYINADNNQLT-MLPELPTS---LEVLSVRNNQLT-FLPE 177

Query: 187 WLGTLSELDILVLQSNNFHGEIKEHKMECGF--PKLRIVDLSNNSFTGNLPSKYFQCWN 243
              +L  LD+    S N    +    +                N  T ++P        
Sbjct: 178 LPESLEALDV----STNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDP 231

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 43/277 (15%), Positives = 82/277 (29%), Gaps = 46/277 (16%)

Query: 112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLE 171
           L       LS N+    +     ++   +       +   + N     + + L N     
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FS 62

Query: 172 IIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231
            + L     + + P  L    ++ +L +  N     + E         L  +D  +N  +
Sbjct: 63  ELQLNRLN-LSSLPDNLP--PQITVLEITQNALI-SLPEL-----PASLEYLDACDNRLS 113

Query: 232 GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM----SNKGQM 287
             LP             +   L    N L+           P     L      +N+  M
Sbjct: 114 -TLPE---------LPASLKHLDVDNNQLTM---------LPELPALLEYINADNNQLTM 154

Query: 288 LSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLES 347
           L  E     L  + + +N     +P    +   L+ L ++ N LE  +P+        E 
Sbjct: 155 LP-ELPTS-LEVLSVRNNQL-TFLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEE 207

Query: 348 ----LDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
                    N  +  IP+ +  L       +  N L+
Sbjct: 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 42/230 (18%), Positives = 71/230 (30%), Gaps = 48/230 (20%)

Query: 167 CAVLEIIDLGNN-------QIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPK 219
             +     L  N            + +      +  +     N     +KE    C   +
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE----CLINQ 60

Query: 220 LRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSL 279
              + L+  + + +LP               + L   +N L S          P    SL
Sbjct: 61  FSELQLNRLNLS-SLPDNLPP--------QITVLEITQNALIS---------LPELPASL 102

Query: 280 TM----SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335
                  N+   L  E     L  + + +N     +P   A L   + ++  NN L   +
Sbjct: 103 EYLDACDNRLSTLP-ELPAS-LKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-ML 155

Query: 336 PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE 385
           P      T LE L + NN  +  +P+    L  L   +VS N L   +P 
Sbjct: 156 PE---LPTSLEVLSVRNNQLT-FLPELPESLEAL---DVSTNLLES-LPA 197

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.8 bits (210), Expect = 8e-18
 Identities = 72/377 (19%), Positives = 132/377 (35%), Gaps = 60/377 (15%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
           H+  +DLS N +   + +      +Q+  +L + + +        + F   S    L L 
Sbjct: 31  HVNYVDLSLNSI-AELNETSF-SRLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLD 87

Query: 77  SNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWI-CNLSSLYILDLSDNNL-SGELPRCLG 134
            N                         ++ +     L++L +L L+  NL    L     
Sbjct: 88  YNQFL----------------------QLETGAFNGLANLEVLTLTQCNLDGAVLSG--- 122

Query: 135 NFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-ANCAVLEIIDLGNNQIIDTFPAWLGTL-- 191
              + F   ++L ++ +  N ++   P S   N     ++DL  N++       L     
Sbjct: 123 ---NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179

Query: 192 SELDILVLQSNNFH--GEIKEHKMECGFP----KLRIVDLSNNSFTGNLPSKYFQCWNAM 245
               +L L S       E      +CG P     +  +DLS N F  ++  ++F      
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 246 KFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN 305
           K  +   L    N  SS+   +F       +  L  S              +    LS +
Sbjct: 240 KIQS-LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG-------------VKTCDLSKS 285

Query: 306 GFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPS-CFGDLTKLESLDLSNNWFSGQIPQQL 363
                +  S+ ++   L+ L+LA N +   I    F  LT L  L+LS N+      +  
Sbjct: 286 KIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 364 TGLTFLEFFNVSHNNLT 380
             L  LE  ++S+N++ 
Sbjct: 344 ENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 81/393 (20%), Positives = 135/393 (34%), Gaps = 52/393 (13%)

Query: 19  KALDLSSNKLHG--NIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
                 +  LH    +P  +        +Y++LS NS+   +   + F        L + 
Sbjct: 13  YNAICINRGLHQVPELPAHV--------NYVDLSLNSIAELN--ETSFSRLQDLQFLKVE 62

Query: 77  SNFLQGPIPAP-----PTKTRHYLVSKNNLTGEIPSWI-CNLSSLYILDLSDNNL-SGEL 129
                  I         +     L   N    ++ +     L++L +L L+  NL    L
Sbjct: 63  QQTPGLVIRNNTFRGLSSLIILKL-DYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 130 PRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-ANCAVLEIIDLGNNQIIDTFPAWL 188
                   + F   ++L ++ +  N ++   P S   N     ++DL  N++       L
Sbjct: 121 SG------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

Query: 189 GTL--SELDILVLQSNNFH--GEIKEHKMECGFP----KLRIVDLSNNSFTGNLPSKYFQ 240
                    +L L S       E      +CG P     +  +DLS N F  ++  ++F 
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQM-LSYEKIPYI--- 296
                K  +   L    N  SS+   +F       +  L  S      LS  KI  +   
Sbjct: 235 AIAGTKIQS-LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293

Query: 297 -------LTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL 348
                  L  + L+ N  + +I  +    L  L  L+L+ N L       F +L KLE L
Sbjct: 294 VFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352

Query: 349 DLSNNWFSGQIPQQL-TGLTFLEFFNVSHNNLT 380
           DLS N     +  Q   GL  L+   +  N L 
Sbjct: 353 DLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.5 bits (178), Expect = 7e-14
 Identities = 66/378 (17%), Positives = 111/378 (29%), Gaps = 52/378 (13%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
                + + L+ L +        I        + +   L L  N           F   +
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFR-GLSSLIILKLDYNQFLQL--ETGAFNGLA 103

Query: 69  GEFTLDLSSNFLQG-PIPA----PPTKTRHYLVSKNNLTGEIPSWI-CNLSSLYILDLSD 122
               L L+   L G  +      P T     ++  NN+    P+    N+   ++LDL+ 
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163

Query: 123 NNLSGELPRCLGNFSD---TFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ 179
           N +       L NF     T +  S++ + DM+   L      +      +  +DL  N 
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 180 IIDTFPAWLGTLSELDIL-------------VLQSNNFHGEIKEHKMECGFPKLRIVDLS 226
             ++             +                  NF               ++  DLS
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283

Query: 227 NNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQ 286
            +     L    F       F +  QL   +N ++      F+G        L   N   
Sbjct: 284 KSKIF-ALLKSVFS-----HFTDLEQLTLAQNEINKIDDNAFWGLT-----HLLKLN--- 329

Query: 287 MLSYEKIPYI----------LTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHI 335
            LS   +  I          L  + LS N     +       L  L+ L+L  N L+   
Sbjct: 330 -LSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVP 387

Query: 336 PSCFGDLTKLESLDLSNN 353
              F  LT L+ + L  N
Sbjct: 388 DGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 49/319 (15%), Positives = 95/319 (29%), Gaps = 75/319 (23%)

Query: 84  IPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNG 143
           +P  P    +  +S N++     +    L  L  L +        +        +TF   
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN------NTFRGL 78

Query: 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN 203
           S+L I+ + +N        +    A LE++ L    +                 VL  N 
Sbjct: 79  SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA--------------VLSGNF 124

Query: 204 FHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSY 263
           F               L ++ L +N+     P+ +F         N  +   +       
Sbjct: 125 FKP----------LTSLEMLVLRDNNIKKIQPASFFL--------NMRRFHVLD------ 160

Query: 264 FSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV 323
                                   L++ K+  I    +L+  G H     ++  L  + +
Sbjct: 161 ------------------------LTFNKVKSICEEDLLNFQGKH----FTLLRLSSITL 192

Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQ---QLTGLTFLEFFNVSHNNLT 380
             +    L           T + +LDLS N F   + +        T ++   +S++   
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 381 GPIPEANQFPTFDSSSFDG 399
           G       F   D+ +F G
Sbjct: 253 GSSFGHTNFKDPDNFTFKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 32/204 (15%)

Query: 3   CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
               +  + +    +                              +LSK+ +       S
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--KS 293

Query: 63  VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWIC-NLSSLYILDLS 121
           VF   +    L L+ N +                       +I       L+ L  L+LS
Sbjct: 294 VFSHFTDLEQLTLAQNEIN----------------------KIDDNAFWGLTHLLKLNLS 331

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181
            N L   +       S  F N   L ++D+S+N ++    +S      L+ + L  NQ+ 
Sbjct: 332 QNFLG-SID------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

Query: 182 DTFPAWLGTLSELDILVLQSNNFH 205
                    L+ L  + L +N + 
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPWD 408

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 3e-17
 Identities = 42/227 (18%), Positives = 71/227 (31%), Gaps = 23/227 (10%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF--TLD 74
            L+ L L + ++ G  P  LL  +  + + LNL   S    D   +            L 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 75  LSSNFLQGPIPAPPTKTRHYL----VSKNNLTGEIPSW--IC--NLSSLYILDLSDNNLS 126
           ++             +    L    +S N   GE      +C     +L +L L +  + 
Sbjct: 156 IAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 127 GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-ANCAVLEIIDLGNNQIIDTFP 185
                  G  S        L  +D+SHN L+           + L  ++L    +     
Sbjct: 215 ----TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 186 AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG 232
                LS LD   L  N         ++    P++  + L  N F  
Sbjct: 271 GLPAKLSVLD---LSYNRLDRNPSPDEL----PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 3e-16
 Identities = 44/243 (18%), Positives = 75/243 (30%), Gaps = 21/243 (8%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNP-SMQNFSYLNLSKNSLTGFDQH 60
             +L +F + +K    LK L + + ++   I    L    +     L L    +TG    
Sbjct: 55  EADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL-------VSKNNLTGEIPSWICNLS 113
           P +         L+L +              +          +++ +        +    
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII 173
           +L  LDLSDN   GE           F     L + +       G      A    L+ +
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 174 DLGNNQIIDTFPA----WLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
           DL +N + D   A    W   L+ L+   L              +    KL ++DLS N 
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLN---LSFTGLK-----QVPKGLPAKLSVLDLSYNR 285

Query: 230 FTG 232
              
Sbjct: 286 LDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 8e-15
 Identities = 50/277 (18%), Positives = 78/277 (28%), Gaps = 36/277 (12%)

Query: 111 NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV- 169
              SL  L +    +   +           +  S L  + + +  + G  P  L      
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRV----LGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 170 -LEIIDLGNNQI--IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLS 226
            L I++L N      D + A L    +  + VL     H      +    FP L  +DLS
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 227 NNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQ 286
           +N   G        C    KF     L      + +               +L  +    
Sbjct: 182 DNPELGERGLISALCPL--KFPTLQVLALRNAGMET---------PSGVCSALAAARVQ- 229

Query: 287 MLSYEKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKL 345
                     L  + LS N                L  L+L+   L+  +P       KL
Sbjct: 230 ----------LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKL 276

Query: 346 ESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP 382
             LDLS N      P     L  +   ++  N     
Sbjct: 277 SVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 43/204 (21%), Positives = 69/204 (33%), Gaps = 35/204 (17%)

Query: 5   LFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFD--QHPS 62
           L E   +LK    LK L ++      N     +       S L+LS N   G        
Sbjct: 140 LAELQQWLK--PGLKVLSIAQAHS-LNFSCEQVR-VFPALSTLDLSDNPELGERGLISAL 195

Query: 63  VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
                     L L +  +                     +G   +       L  LDLS 
Sbjct: 196 CPLKFPTLQVLALRNAGM------------------ETPSGVCSALAAARVQLQGLDLSH 237

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID 182
           N+L           + +    S L  +++S   L+ ++PK L   A L ++DL  N+ +D
Sbjct: 238 NSLRDAAG------APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR-LD 287

Query: 183 TFPAWLGTLSELDILVLQSNNFHG 206
             P+    L ++  L L+ N F  
Sbjct: 288 RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 44/225 (19%), Positives = 76/225 (33%), Gaps = 17/225 (7%)

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDI--LVLQSNNFHGEIKEHKMEC-GFPKLRIVDLS 226
           LE +    +   D    +   +  L +  L +++      I    +   G   L+ + L 
Sbjct: 45  LEYLLKRVDTEADLGQ-FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 227 NNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMS-NKG 285
           N   TG  P    +       +N   LR +       +  +   +       L+++    
Sbjct: 104 NLEVTGTAPPPLLE--ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 286 QMLSYEKIPYI--LTAVILSSNGFHGEIPTSIA----NLKGLQVLSLANNNLE---GHIP 336
              S E++     L+ + LS N   GE     A        LQVL+L N  +E   G   
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 337 SCFGDLTKLESLDLSNNWFSGQIPQQL-TGLTFLEFFNVSHNNLT 380
           +      +L+ LDLS+N              + L   N+S   L 
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 36/186 (19%), Positives = 56/186 (30%), Gaps = 38/186 (20%)

Query: 2   SCNLFEFP-NFLKQQKHLKALDLSSNKLHGNIPKW--LLNPSMQNFSYLNLSKNSLTGF- 57
             +   F    ++    L  LDLS N   G       L          L L    +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 58  DQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWIC-NLSSLY 116
               ++         LDLS                      N+L     +  C   S L 
Sbjct: 218 GVCSALAAARVQLQGLDLSH---------------------NSLRDAAGAPSCDWPSQLN 256

Query: 117 ILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG 176
            L+LS   L  ++P+ L          + L ++D+S+N L  R P        +  + L 
Sbjct: 257 SLNLSFTGLK-QVPKGL---------PAKLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLK 304

Query: 177 NNQIID 182
            N  +D
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 6/106 (5%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKG--LQVLSLANNNLEG---HIPSCFGDL-TKLESLDL 350
           L  + L +    G  P  +    G  L +L+L N +       +      L   L+ L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 351 SNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSS 396
           +         +Q+     L   ++S N   G     +        +
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 55/326 (16%), Positives = 115/326 (35%), Gaps = 51/326 (15%)

Query: 72  TLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP 130
            +  S   L+  +P   P  T    +  N +T        NL +L+ L L +N +S ++ 
Sbjct: 35  VVQCSDLGLEK-VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KIS 92

Query: 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-ANCAVLEIIDLGNNQIIDTFPAWLG 189
                    F     L  + +S N L+  +P+ +      L+ + +  N+I     +   
Sbjct: 93  ------PGAFAPLVKLERLYLSKNQLK-ELPEKMPKT---LQELRVHENEITKVRKSVFN 142

Query: 190 TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249
            L+++ ++ L +N       E+    G  KL  + +++ + T  +P             +
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--------S 193

Query: 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYI----------LTA 299
            ++L    N ++   +    G       +L        LS+  I  +          L  
Sbjct: 194 LTELHLDGNKITKVDAASLKGL-----NNLAKLG----LSFNSISAVDNGSLANTPHLRE 244

Query: 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG------HIPSCFGDLTKLESLDLSNN 353
           + L++N    ++P  +A+ K +QV+ L NNN+          P           + L +N
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 354 -WFSGQIPQQL-TGLTFLEFFNVSHN 377
                +I       +       + + 
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 53/286 (18%), Positives = 104/286 (36%), Gaps = 50/286 (17%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
           S   L  ++P  +       +LDL +N ++ E+          F N  NL  + + +N +
Sbjct: 39  SDLGLE-KVPKDL--PPDTALLDLQNNKIT-EIK------DGDFKNLKNLHTLILINNKI 88

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
               P + A    LE + L  NQ +   P        L  L +  N    ++++     G
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQ-LKELPE--KMPKTLQELRVHENEIT-KVRKSVFN-G 143

Query: 217 FPKLRIVDLSNNSFT-GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHY 275
             ++ +V+L  N      + +  FQ           +L Y+R  ++              
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQ--------GMKKLSYIR--IA-------------- 179

Query: 276 YYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLEGH 334
                       +  + +P  LT + L  N    ++   S+  L  L  L L+ N++   
Sbjct: 180 ------DTNITTIP-QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 335 IPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
                 +   L  L L+NN    ++P  L    +++   + +NN++
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 41/249 (16%)

Query: 9   PNFLKQQKHLKALDLSSNK----------------LHGN----IPKWLLNPSMQNFSYLN 48
           P        L+ L LS N+                +H N    + K + N  +     + 
Sbjct: 93  PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG-LNQMIVVE 151

Query: 49  LSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQG-PIPAPPTKTRHYLVSKNNLTGEIPS 107
           L  N L         F        + ++   +   P   PP+ T  +L   N +T ++ +
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL-DGNKIT-KVDA 209

Query: 108 WI-CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN 166
                L++L  L LS N++S  +         +  N  +L  + +++N L  ++P  LA+
Sbjct: 210 ASLKGLNNLAKLGLSFNSIS-AVDN------GSLANTPHLRELHLNNNKLV-KVPGGLAD 261

Query: 167 CAVLEIIDLGNNQI----IDTF--PAWLGTLSELDILVLQSNNF-HGEIKEHKMECGFPK 219
              ++++ L NN I     + F  P +    +    + L SN   + EI+     C    
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC-VYV 320

Query: 220 LRIVDLSNN 228
              V L N 
Sbjct: 321 RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 62/345 (17%), Positives = 107/345 (31%), Gaps = 74/345 (21%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
                LDL +NK+   I       +++N   L L  N ++     P  F        L L
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFK-NLKNLHTLILINNKISKI--SPGAFAPLVKLERLYL 107

Query: 76  SSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGN 135
           S N L+                      E+P  +    +L  L + +N ++ ++ +    
Sbjct: 108 SKNQLK----------------------ELPEKM--PKTLQELRVHENEIT-KVRK---- 138

Query: 136 FSDTFMNGSNLGIIDMSHNLLQGRI--PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE 193
               F   + + ++++  N L+       +      L  I + +   I T P   G    
Sbjct: 139 --SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPPS 193

Query: 194 LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQL 253
           L  L L  N    ++    ++ G   L  + LS NS +  + +            N   L
Sbjct: 194 LTELHLDGNKIT-KVDAASLK-GLNNLAKLGLSFNSIS-AVDNGSLA--------NTPHL 242

Query: 254 RYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE 310
           R +    N L            P          +   L    I  I       SN F   
Sbjct: 243 RELHLNNNKLVK---------VPGGLADHK-YIQVVYLHNNNISAI------GSNDFCP- 285

Query: 311 IPTSIANLKGLQVLSLANNNLEGHI--PSCFGDLTKLESLDLSNN 353
            P           +SL +N ++     PS F  +    ++ L N 
Sbjct: 286 -PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           L  V  S  G   ++P  +       +L L NN +       F +L  L +L L NN  S
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLT 380
              P     L  LE   +S N L 
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK 113

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 18/121 (14%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWF- 355
           L  + LS N    E+P  +   K LQ L +  N +     S F  L ++  ++L  N   
Sbjct: 102 LERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 356 SGQIPQQ-LTGLTFLEFFNVSHNNLTGPIPEA------------NQFPTFDSSSFDGNSG 402
           S  I      G+  L +  ++  N+T  IP+             N+    D++S  G + 
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNN 217

Query: 403 L 403
           L
Sbjct: 218 L 218

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 57/287 (19%), Positives = 96/287 (33%), Gaps = 68/287 (23%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
           +   LT  +P+ I   SS   L+L  N L   LP         F   + L  + +S N L
Sbjct: 15  NSKGLT-SVPTGI--PSSATRLELESNKLQ-SLP------HGVFDKLTQLTKLSLSSNGL 64

Query: 157 QGR--IPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKME 214
             +    +S      L+ +DL  N +I T  +    L +L+ L  Q +N   ++ E  + 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122

Query: 215 CGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPH 274
                L  +D+S+        +  F           S L  ++                 
Sbjct: 123 LSLRNLIYLDISHTHTR-VAFNGIFN--------GLSSLEVLK----------------- 156

Query: 275 YYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEG 333
                                      ++ N F       I   L+ L  L L+   LE 
Sbjct: 157 ---------------------------MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189

Query: 334 HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
             P+ F  L+ L+ L++S+N F          L  L+  + S N++ 
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 45/227 (19%), Positives = 81/227 (35%), Gaps = 16/227 (7%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
                +   L  L LSSN L         +    +  YL+LS N +       S F    
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLE 101

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTR----HYL-VSKNNLTGEIPSWICNLSSLYILDLSDN 123
               LD   + L+  +             YL +S  +           LSSL +L ++ N
Sbjct: 102 QLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDT 183
           +             D F    NL  +D+S   L+   P +  + + L+++++ +N     
Sbjct: 161 SFQENFL------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 184 FPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230
                  L+ L +L    N+     K+ +++     L  ++L+ N F
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 20/230 (8%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
               L+L SNKL  ++P  + +  +   + L+LS N L+           ++    LDLS
Sbjct: 29  SATRLELESNKLQ-SLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 77  SNFLQGPIPA---PPTKTRHYLVSKNNLTGEIP--SWICNLSSLYILDLSDNNLSGELPR 131
            N +   + +      +  H     +NL  ++   S   +L +L  LD+S  +       
Sbjct: 87  FNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAF- 142

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRI-PKSLANCAVLEIIDLGNNQIIDTFPAWLGT 190
                +  F   S+L ++ M+ N  Q    P        L  +DL   Q+    P    +
Sbjct: 143 -----NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 191 LSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240
           LS L +L +  NNF   +     +     L+++D S N        +  Q
Sbjct: 198 LSSLQVLNMSHNNFF-SLDTFPYK-CLNSLQVLDYSLNHIM-TSKKQELQ 244

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC--FGDLTKLESLDLSNNW 354
           L  + LS NG    + ++   L+ L+ L   ++NL+  +     F  L  L  LD+S+  
Sbjct: 80  LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTH 137

Query: 355 FSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE 385
                     GL+ LE   ++ N+       
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 53/286 (18%), Positives = 91/286 (31%), Gaps = 51/286 (17%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
           S   L   +P  I       +LDL +N++S EL        D F    +L  + + +N +
Sbjct: 41  SDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELR------KDDFKGLQHLYALVLVNNKI 90

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
                K+ +    L+ + +  N +    P      S L  L +  N    ++ +     G
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHL-VEIPP--NLPSSLVELRIHDNRIR-KVPKGVFS-G 145

Query: 217 FPKLRIVDLSNNSFT-GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHY 275
              +  +++  N           F        +  + LR     L+           P  
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDG------LKLNYLRISEAKLTG---------IP-- 188

Query: 276 YYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLEGH 334
                          + +P  L  + L  N     I    +     L  L L +N +   
Sbjct: 189 ---------------KDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 335 IPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
                  L  L  L L NN  S ++P  L  L  L+   +  NN+T
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 48/235 (20%), Positives = 82/235 (34%), Gaps = 27/235 (11%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
           + L+ L +S N L   IP  L      +   L +  N +        VF        +++
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLP----SSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEM 154

Query: 76  SSNFLQGPIPAPPT----KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
             N L+     P      K  +  +S+  LT  IP  +    +L  L L  N +   +  
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIE- 209

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
                 +  +  S L  + + HN ++     SL+    L  + L NN+ +   PA L  L
Sbjct: 210 -----LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDL 263

Query: 192 SELDILVLQSNNFH----GEIKEHKMECGFPKLRIVDLSNNSFT-GNLPSKYFQC 241
             L ++ L +NN       +               + L NN      +    F+C
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 55/301 (18%), Positives = 98/301 (32%), Gaps = 52/301 (17%)

Query: 72  TLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP 130
            +  S   L+  +P      T    +  N+++         L  LY L L +N +S ++ 
Sbjct: 37  VVQCSDLGLKA-VPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIH 94

Query: 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-ANCAVLEIIDLGNNQIIDTFPAWLG 189
                    F     L  + +S N L   IP +L ++   L  + + +N+I         
Sbjct: 95  ------EKAFSPLRKLQKLYISKNHLV-EIPPNLPSS---LVELRIHDNRIRKVPKGVFS 144

Query: 190 TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN 249
            L  ++ + +  N       E     G  KL  + +S    T  +P    +         
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDG-LKLNYLRISEAKLT-GIPKDLPE--------T 194

Query: 250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYI----------LTA 299
            ++L    N + +    D   Y       L        L + +I  I          L  
Sbjct: 195 LNELHLDHNKIQAIELEDLLRY-----SKLYRLG----LGHNQIRMIENGSLSFLPTLRE 245

Query: 300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPS-------CFGDLTKLESLDLSN 352
           + L +N     +P  + +LK LQV+ L  NN+   +                   + L N
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 353 N 353
           N
Sbjct: 304 N 304

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 59/348 (16%), Positives = 103/348 (29%), Gaps = 81/348 (23%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
                LDL +N +   + K      +Q+   L L  N ++    H   F        L +
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFK-GLQHLYALVLVNNKISKI--HEKAFSPLRKLQKLYI 109

Query: 76  SSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGN 135
           S N L                       EIP  +   SSL  L + DN +  ++P+    
Sbjct: 110 SKNHLV----------------------EIPPNL--PSSLVELRIHDNRIR-KVPK---- 140

Query: 136 FSDTFMNGSNLGIIDMSHNLLQ-GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSEL 194
               F    N+  I+M  N L+         +   L  + +   + +   P        L
Sbjct: 141 --GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPK--DLPETL 195

Query: 195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLR 254
           + L L  N     I+   +   + KL  + L +N     + +        ++ ++     
Sbjct: 196 NELHLDHNKIQ-AIELEDLL-RYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLD--- 249

Query: 255 YMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP-- 312
              N LS           P     L +               L  V L +N    ++   
Sbjct: 250 --NNKLSR---------VPAGLPDLKL---------------LQVVYLHTNNIT-KVGVN 282

Query: 313 -----TSIANLKGLQVLSLANNNLEGHI--PSCFGDLTKLESLDLSNN 353
                           +SL NN +      P+ F  +T   ++   N 
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 26/166 (15%), Positives = 48/166 (28%), Gaps = 29/166 (17%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
           + L  L L  NK+   I    L         L L  N +           +      L L
Sbjct: 193 ETLNELHLDHNKIQ-AIELEDLL-RYSKLYRLGLGHNQIRMI--ENGSLSFLPTLRELHL 248

Query: 76  SSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGN 135
            +N L                        +P+ + +L  L ++ L  NN++ ++      
Sbjct: 249 DNNKLS----------------------RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFC 285

Query: 136 FSDTFMNGSNLGIIDMSHNLLQGRI--PKSLANCAVLEIIDLGNNQ 179
                +  +    I + +N +      P +         I  GN +
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           L  V  S  G    +P  I+      +L L NN++       F  L  L +L L NN  S
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLT 380
               +  + L  L+   +S N+L 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV 115

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           L A++L +N        + + L+ LQ L ++ N+L   IP      + L  L + +N   
Sbjct: 80  LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR 136

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
                  +GL  +    +  N L     E   F
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 27/147 (18%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
              L +   L  L L  N++   I    L+  +     L+L  N L+     P+  P   
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIR-MIENGSLS-FLPTLRELHLDNNKLSRV---PAGLPDLK 264

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS-G 127
               + L +N +               V  N+       +    +    + L +N +   
Sbjct: 265 LLQVVYLHTNNITK-------------VGVNDFCP--VGFGVKRAYYNGISLFNNPVPYW 309

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHN 154
           E+         TF   ++   I   + 
Sbjct: 310 EVQP------ATFRCVTDRLAIQFGNY 330

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 50/265 (18%), Positives = 99/265 (37%), Gaps = 30/265 (11%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
           + + L+L  N++   I        +++   L LS+N +         F   +   TL+L 
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFK-HLRHLEILQLSRNHIRTI--EIGAFNGLANLNTLELF 120

Query: 77  SNFLQGPIPA----PPTKTRHYLVSKNNLTGEIPS-WICNLSSLYILDLSDNNLSGELPR 131
            N L   IP       +K +   +  N +   IPS     + SL  LDL +      +  
Sbjct: 121 DNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS- 177

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
                   F   SNL  ++++   L+  IP +L     L+ +DL  N +    P     L
Sbjct: 178 -----EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS 251
             L  L +  +     I+ +  +     L  ++L++N+ T  LP   F   + ++ ++  
Sbjct: 231 MHLQKLWMIQSQIQ-VIERNAFD-NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLH 287

Query: 252 --------QLRYMRNFLSSYFSFDF 268
                    + ++  ++      + 
Sbjct: 288 HNPWNCNCDILWLSWWIKDMAPSNT 312

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 8e-16
 Identities = 57/286 (19%), Positives = 103/286 (36%), Gaps = 48/286 (16%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
            + NL  E+P  I   ++  +L+L +N +   +        ++F +  +L I+ +S N +
Sbjct: 51  VRKNLR-EVPDGI--STNTRLLNLHENQIQ-IIK------VNSFKHLRHLEILQLSRNHI 100

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
           +     +    A L  ++L +N++          LS+L  L L++N     I  +     
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN-R 158

Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFP 273
            P LR +DL        +    F+          S LRY+      L    +        
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFE--------GLSNLRYLNLAMCNLREIPNLTP----- 205

Query: 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG 333
                         L        L  + LS N      P S   L  LQ L +  + ++ 
Sbjct: 206 --------------LIK------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 334 HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379
              + F +L  L  ++L++N  +       T L  LE  ++ HN  
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 291 EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350
           + I      + L  N        S  +L+ L++L L+ N++       F  L  L +L+L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 351 SNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
            +N  +         L+ L+   + +N + 
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 297 LTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPS-CFGDLTKLESLDLSNNW 354
           L  + L  N     IP      L  L+ L L NN +E  IPS  F  +  L  LDL    
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171

Query: 355 FSGQIPQQ-LTGLTFLEFFNVSHNNLT 380
               I +    GL+ L + N++  NL 
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLR 198

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 55/286 (19%), Positives = 100/286 (34%), Gaps = 48/286 (16%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
           ++  L+ E+P  I   S+   L+L +NN+   +       +DTF +  +L ++ +  N +
Sbjct: 62  TRRGLS-EVPQGI--PSNTRYLNLMENNIQ-MIQ------ADTFRHLHHLEVLQLGRNSI 111

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
           +     +    A L  ++L +N +          LS+L  L L++N     I  +     
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN-R 169

Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFP 273
            P L  +DL        +         A  F     L+Y+      +    +        
Sbjct: 170 VPSLMRLDLGELKKLEYISE------GA--FEGLFNLKYLNLGMCNIKDMPNLTPLVG-- 219

Query: 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG 333
                                  L  + +S N F    P S   L  L+ L + N+ +  
Sbjct: 220 -----------------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 334 HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379
              + F  L  L  L+L++N  S       T L +L   ++ HN  
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 50/265 (18%), Positives = 100/265 (37%), Gaps = 30/265 (11%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
           + + L+L  N +   I        + +   L L +NS+         F   +   TL+L 
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFR-HLHHLEVLQLGRNSIRQI--EVGAFNGLASLNTLELF 131

Query: 77  SNFLQGPIPA----PPTKTRHYLVSKNNLTGEIPS-WICNLSSLYILDLSDNNLSGELPR 131
            N+L   IP+      +K R   +  N +   IPS     + SL  LDL +      +  
Sbjct: 132 DNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS- 188

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
                   F    NL  +++    ++  +P +L     LE +++  N   +  P     L
Sbjct: 189 -----EGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS 251
           S L  L + ++     I+ +  + G   L  ++L++N+ + +LP   F     +  ++  
Sbjct: 242 SSLKKLWVMNSQVS-LIERNAFD-GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298

Query: 252 --------QLRYMRNFLSSYFSFDF 268
                    + ++  +L  Y   + 
Sbjct: 299 HNPWNCDCDILWLAWWLREYIPTNS 323

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
                    L  L+L  N L   IP       +     L L  N +         F    
Sbjct: 116 VGAFNGLASLNTLELFDNWLT-VIPSGAFEY-LSKLRELWLRNNPIESI--PSYAFNRVP 171

Query: 69  GEFTLDLSS-NFLQGPIPAPP----TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDN 123
               LDL     L+  I           ++  +   N+  ++P+    L  L  L++S N
Sbjct: 172 SLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIK-DMPNLT-PLVGLEELEMSGN 228

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDT 183
           +   E+         +F   S+L  + + ++ +      +    A L  ++L +N +   
Sbjct: 229 HFP-EIR------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 184 FPAWLGTLSELDILVLQSNNFH 205
                  L  L  L L  N ++
Sbjct: 282 PHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
            + V+ +  G   E+P  I      + L+L  NN++      F  L  LE L L  N   
Sbjct: 56  FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 357 GQIPQQ-LTGLTFLEFFNVSHNNLT 380
            QI      GL  L    +  N LT
Sbjct: 113 -QIEVGAFNGLASLNTLELFDNWLT 136

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 312 PTSIANLKGLQVLSLANNNLEGHIPS-CFGDLTKLESLDLSNNWFSGQIPQQ-LTGLTFL 369
             +   L  L+ L L NN +E  IPS  F  +  L  LDL        I +    GL  L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 370 EFFNVSHNNLT 380
           ++ N+   N+ 
Sbjct: 199 KYLNLGMCNIK 209

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.8 bits (194), Expect = 8e-16
 Identities = 62/377 (16%), Positives = 114/377 (30%), Gaps = 37/377 (9%)

Query: 21  LDLSSNKLH---GNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSS 77
           +D S N L     ++ +          + LN+S+N ++      S     S    L +S 
Sbjct: 5   VDRSKNGLIHVPKDLSQ--------KTTILNISQNYISELW--TSDILSLSKLRILIISH 54

Query: 78  NFLQGPIPA----PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCL 133
           N +Q  +         +  +  +S N L  +I        +L  LDLS N     LP C 
Sbjct: 55  NRIQY-LDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFD-ALPIC- 108

Query: 134 GNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI-IDLGNNQIIDTFPAWLGTLS 192
                 F N S L  + +S   L+      +A+  + ++ + LG        P  L   +
Sbjct: 109 ----KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164

Query: 193 ELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQ 252
              + ++   N                L + ++                         S 
Sbjct: 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224

Query: 253 LRYMRNFLSSYFSFDFYGYFPH---YYYSLTMSNKGQMLSYEKIPYI------LTAVILS 303
           L       +            H   +Y+S++       L +    Y       L+   + 
Sbjct: 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

Query: 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQL 363
           S+ F             + + +   +        C   ++    LD SNN  +  + +  
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 364 TGLTFLEFFNVSHNNLT 380
             LT LE   +  N L 
Sbjct: 345 GHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.4 bits (180), Expect = 4e-14
 Identities = 64/357 (17%), Positives = 116/357 (32%), Gaps = 58/357 (16%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFT--- 72
           +      L           ++L+ S++  + L LS       D   S F     +     
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 73  ---------LDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWI------CNLSSLYI 117
                    ++ + N     +      T  Y    N        +        +L +L I
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGN 177
             +  +             S  +   SN+ I + + +  +       +  +    +D  N
Sbjct: 281 HQVVSDVFGF-------PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 178 NQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237
           N + DT     G L+EL+ L+LQ N      K  +M      L+ +D+S NS + +    
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 238 YFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYIL 297
                 ++  +N S                              SN      +  +P  +
Sbjct: 394 DCSWTKSLLSLNMS------------------------------SNILTDTIFRCLPPRI 423

Query: 298 TAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC-FGDLTKLESLDLSNN 353
             + L SN     IP  +  L+ LQ L++A+N L+  +P   F  LT L+ + L  N
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 63/381 (16%), Positives = 116/381 (30%), Gaps = 54/381 (14%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFP-WSSGEFTLD 74
             LK L LS+  L  +    + +    N S + L      G  + P     +++    + 
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAH---LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 75  LSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLG 134
             +N     I     KT   L   +N+   +    C+     +  L  N     L     
Sbjct: 172 FPTNKEFHFILDVSVKTVANL-ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 135 NFSDT-------FMNGSNLGIIDMSHNLLQGRIPKSLANCA-----VLEIIDLGNNQIID 182
             +          +  + +    +S+  LQG++     + +      L I  + ++    
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 183 TFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC--GFPKLRIVDLSNNSFTGNLPSKYFQ 240
                    S ++I     +      +   M C         +D SNN  T +   +   
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSG----TRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCG 345

Query: 241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAV 300
                       L    N L                    M +             L  +
Sbjct: 346 -----HLTELETLILQMNQLKEL--SKIAEMTTQ------MKS-------------LQQL 379

Query: 301 ILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQI 359
            +S N    +      +  K L  L++++N L   I  C     +++ LDL +N     I
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SI 436

Query: 360 PQQLTGLTFLEFFNVSHNNLT 380
           P+Q+  L  L+  NV+ N L 
Sbjct: 437 PKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 65/386 (16%), Positives = 123/386 (31%), Gaps = 57/386 (14%)

Query: 13  KQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF- 71
           K  + L+ LDLS NKL              N  +L+LS N+                EF 
Sbjct: 66  KFNQELEYLDLSHNKLVKISCHPT-----VNLKHLDLSFNAFDALPI--------CKEFG 112

Query: 72  ------TLDLSSNFLQGPIPAPPT----KTRHYLVSKNNLTGEIPSWICNL--SSLYILD 119
                  L LS+  L+     P           ++ +     E P  + +    SL+I+ 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 120 LSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ 179
            ++      L   +   ++  ++     + D   +     + K   N  +   + L N +
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN-LTLNNIE 231

Query: 180 IIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYF 239
                     +   +  LV  +                  +    +SN    G L  + F
Sbjct: 232 TTWN------SFIRILQLVWHTT-----------------VWYFSISNVKLQGQLDFRDF 268

Query: 240 QC-WNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE-KIPYIL 297
                ++K ++  Q+    +      S+ +  +      + T+S    +           
Sbjct: 269 DYSGTSLKALSIHQVVS--DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 298 TAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE--GHIPSCFGDLTKLESLDLSNNWF 355
             +  S+N     +  +  +L  L+ L L  N L+    I      +  L+ LD+S N  
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

Query: 356 SGQIPQQL-TGLTFLEFFNVSHNNLT 380
           S    +   +    L   N+S N LT
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 24/222 (10%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
           K L    + S+      P+  +     N +  N + +       H       S    LD 
Sbjct: 276 KALSIHQVVSDVFG--FPQSYIYEIFSNMNIKNFTVSGTRMV--HMLCPSKISPFLHLDF 331

Query: 76  SSNFLQGPIPAPP---TKTRHYLVSKNNLT--GEIPSWICNLSSLYILDLSDNNLSGELP 130
           S+N L   +       T+    ++  N L    +I      + SL  LD+S N++S +  
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGT 190
                         +L  ++MS N+L   I + L     ++++DL +N+I  + P  +  
Sbjct: 392 ------KGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKI-KSIPKQVVK 442

Query: 191 LSELDILVLQSNNFHGEIKE--HKMECGFPKLRIVDLSNNSF 230
           L  L  L + SN     +K     +      L+ + L  N +
Sbjct: 443 LEALQELNVASNQ----LKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 293 IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN 352
           +    T + +S N       + I +L  L++L +++N ++    S F    +LE LDLS+
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 353 NWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
           N            L  L   ++S N     +P   +F
Sbjct: 79  NKLVKISCHPTVNLKHL---DLSFNAFDA-LPICKEF 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 314 SIANLKGLQVLSLANNNLEGHIPSC--FGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEF 371
           S      L+ L L+ N  +  +P C  FG++++L+ L LS           +  L   + 
Sbjct: 85  SCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 372 FNVSHNNLTGPIP 384
             V          
Sbjct: 144 LLVLGETYGEKED 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.6 bits (178), Expect = 9e-14
 Identities = 73/398 (18%), Positives = 136/398 (34%), Gaps = 71/398 (17%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
             L+ LDLS N     +P      ++   ++L LS       D    V         LDL
Sbjct: 121 ASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLD-LLPVAHLHLSCILLDL 178

Query: 76  SSNFLQ----GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
            S  ++      +  P T   H +   N+L         ++++L  L LS+  L+ E  +
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ--VNMSVNALGHLQLSNIKLNDENCQ 236

Query: 132 CLGNFSD---------------------------TFMNGSNLGIIDMSHNLLQGRIPKSL 164
            L  F                              F     +  +++ +  +  RI +  
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 165 ANCA-----VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC--GF 217
              +      L I  + N   + +  A     +E++I +L  ++         M C    
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD----TPFIHMVCPPSP 352

Query: 218 PKLRIVDLSNNSFTGNLPSKYFQCWN------------------AMKFVNASQLRYMRNF 259
                ++ + N FT +   +                        A+   N S L  +   
Sbjct: 353 SSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

Query: 260 LSS--YFSFDFYGYFPHYYYSLTMS-NKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIA 316
           L+S    ++D    +      L +S N      +  +P  +  + L +N     IP  + 
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVT 470

Query: 317 NLKGLQVLSLANNNLEGHIP-SCFGDLTKLESLDLSNN 353
           +L+ LQ L++A+N L+  +P   F  LT L+ + L +N
Sbjct: 471 HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 64/377 (16%), Positives = 119/377 (31%), Gaps = 35/377 (9%)

Query: 19  KALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSN 78
             +D S+  L  ++PK L  P       L+LS+NS++          + S    L LS N
Sbjct: 34  SMVDYSNRNLT-HVPKDL--PP--RTKALSLSQNSISEL--RMPDISFLSELRVLRLSHN 86

Query: 79  FLQGPIPA----PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLG 134
            ++  +            +  VS N L   I    C ++SL  LDLS N+    LP C  
Sbjct: 87  RIRS-LDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVC-- 139

Query: 135 NFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSEL 194
                F N + L  + +S    +      +A+  +     L +            +L   
Sbjct: 140 ---KEFGNLTKLTFLGLSAAKFRQLDLLPVAH--LHLSCILLDLVSYHIKGGETESLQIP 194

Query: 195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLR 254
           +  VL        +   ++      L  + LSN         +    + +      + L 
Sbjct: 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE-NCQRLMTFLSELTRGPTLLN 253

Query: 255 ---YMRNFLSSYFSFDFYGYFPHYYYSLTMSN--------KGQMLSYEKIPYILTAVILS 303
                           F  ++P     L + N        + +    E     L    + 
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQL 363
           +  F        +    + +  L+ ++       C    +    L+ + N F+  + Q  
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373

Query: 364 TGLTFLEFFNVSHNNLT 380
           + L  L+   +  N L 
Sbjct: 374 STLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 63/383 (16%), Positives = 126/383 (32%), Gaps = 59/383 (15%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF---- 71
           + L+ LD+S N+L  NI    +     +  +L+LS N                 EF    
Sbjct: 100 QDLEYLDVSHNRLQ-NISCCPM----ASLRHLDLSFNDFDVLPVC--------KEFGNLT 146

Query: 72  ---TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
               L LS+   +     P        +                     LDL   ++ G 
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCIL--------------------LDLVSYHIKGG 186

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL----GNNQIIDTF 184
               L        N + L ++   ++L   ++  S+     L++ ++     N Q + TF
Sbjct: 187 ETESLQIP-----NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241

Query: 185 PAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPK-LRIVDLSNNSFTGNLPSKYFQCWN 243
            + L     L  + LQ      +      +  +P+ +  +++ N + T  +  + F    
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT--Y 299

Query: 244 AMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE--KIPYILTAVI 301
           +   + +  + +++N +  +     Y  F      +   +    +       P   T + 
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 302 LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN----WFSG 357
            + N F   +    + LK LQ L L  N L+ +          + SL+  +       S 
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 358 QIPQQLTGLTFLEFFNVSHNNLT 380
              +       +   N+S N LT
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLT 441

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 53/369 (14%), Positives = 98/369 (26%), Gaps = 75/369 (20%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF 71
           L Q  +L  L   SNKL  N+        +   +YLN   N LT  D        +    
Sbjct: 81  LSQNTNLTYLACDSNKLT-NLD----VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLT 130

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
            L+ + N L     +  T+        N    ++   +   + L  LD S N ++     
Sbjct: 131 YLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT----- 183

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
                         L  ++   N +  ++   L     L  +D  +N++       +  L
Sbjct: 184 -----ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL-TEID--VTPL 232

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS 251
           ++L       N                KL  +                        ++ +
Sbjct: 233 TQLTYFDCSVNPL-----TELDVSTLSKLTTLHCIQTDLLE---------------IDLT 272

Query: 252 QLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEI 311
               +  F +                 +   +             L  +   + G   E+
Sbjct: 273 HNTQLIYFQAEGCR------------KIKELDVTHNTQ-------LYLLDCQAAGIT-EL 312

Query: 312 PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEF 371
              ++    L  L L N  L   +       TKL+SL   N          +  +  L  
Sbjct: 313 D--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNN 365

Query: 372 FNVSHNNLT 380
              +     
Sbjct: 366 NFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 55/375 (14%), Positives = 106/375 (28%), Gaps = 87/375 (23%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF 71
            +Q   L +LD  ++ +  ++        +     L  + N++T                
Sbjct: 38  EEQLATLTSLDCHNSSIT-DMTGIEKLTGLT---KLICTSNNIT---------------- 77

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
           TLDLS N          T   +     N LT  +   +  L+ L  L+   N L+     
Sbjct: 78  TLDLSQN----------TNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT----- 119

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
                         L  ++ + N L       +++   L  +D   N+ I      +   
Sbjct: 120 -----KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQ 169

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT----GNLPS-KYFQCW-NAM 245
           ++L  L    N                 L  ++   N+ T           +  C  N +
Sbjct: 170 TQLTTLDCSFNKITELDVSQ-----NKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKL 224

Query: 246 KFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN 305
             ++ + L  +  F  S                    N    L    +   LT +     
Sbjct: 225 TEIDVTPLTQLTYFDCSV-------------------NPLTELDVSTLSK-LTTLHCIQT 264

Query: 306 GFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG 365
               EI   + +   L             +       T+L  LD      + ++   L+ 
Sbjct: 265 DLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQ 316

Query: 366 LTFLEFFNVSHNNLT 380
              L +  +++  LT
Sbjct: 317 NPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 41/293 (13%), Positives = 91/293 (31%), Gaps = 50/293 (17%)

Query: 92  RHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDM 151
              + +   +          L++L  LD  +++++ ++   +   +        L  +  
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLT-------GLTKLIC 71

Query: 152 SHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEH 211
           + N +   +   L+    L  +   +N++ +     +  L++L  L   +N         
Sbjct: 72  TSNNITT-LD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL-----TK 120

Query: 212 KMECGFPKLRIVDLSNNSFT----GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFD 267
                 P L  ++ + N+ T     +         +  K +    +       +   SF 
Sbjct: 121 LDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF- 179

Query: 268 FYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLA 327
                          NK   L   +    L  +   +N    ++   +     L  L  +
Sbjct: 180 ---------------NKITELDVSQNKL-LNRLNCDTNNIT-KLD--LNQNIQLTFLDCS 220

Query: 328 NNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
           +N L   I      LT+L   D S N  +      L+ LT L   +    +L 
Sbjct: 221 SNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 55/255 (21%), Positives = 88/255 (34%), Gaps = 27/255 (10%)

Query: 135 NFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSEL 194
           +F+D F +  N      +   +Q     S    A L  +D  N+ I D     +  L+ L
Sbjct: 10  SFNDWFPD-DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGL 66

Query: 195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT----GNLPS-KYFQC-WNAMKFV 248
             L+  SNN    I    +      L  +   +N  T      L    Y  C  N +  +
Sbjct: 67  TKLICTSNN----ITTLDL-SQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL 121

Query: 249 NASQLRYMRNFLSSY---FSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN 305
           + SQ   +     +       D             ++ K   L        LT +  S N
Sbjct: 122 DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSFN 180

Query: 306 GFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG 365
                    ++  K L  L+   NN+   +        +L  LD S+N  + +I   +T 
Sbjct: 181 KITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTP 231

Query: 366 LTFLEFFNVSHNNLT 380
           LT L +F+ S N LT
Sbjct: 232 LTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 32/230 (13%), Positives = 65/230 (28%), Gaps = 61/230 (26%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF 71
           +     L   D S N L   +    L       + L+  +  L                 
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVSTL----SKLTTLHCIQTDLL---------------- 267

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
            +DL+ N          T+  ++         E+   + + + LY+LD     ++     
Sbjct: 268 EIDLTHN----------TQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT----- 310

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
                         L  + +++  L   +   +++   L+ +   N   I  F + +G +
Sbjct: 311 -----ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAH-IQDFSS-VGKI 360

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC 241
             L+             KE              L+NNS T  +       
Sbjct: 361 PALNNNFEAEGQTITMPKE-------------TLTNNSLTIAVSPDLLDQ 397

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 56/341 (16%), Positives = 104/341 (30%), Gaps = 88/341 (25%)

Query: 18  LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSS 77
           +K+LDLS+N++   I    L     N   L L+ N +         F        LDLS 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQ-RCVNLQALVLTSNGINTI--EEDSFSSLGSLEHLDLSY 109

Query: 78  NFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS 137
           N+L   +                      SW   LSSL  L+L  N             +
Sbjct: 110 NYLSN-LS--------------------SSWFKPLSSLTFLNLLGNPYKTLGE------T 142

Query: 138 DTFMNGSNLGIIDMSHNLLQGRIP-KSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDI 196
             F + + L I+ + +     +I  K  A    LE +++  + +    P  L ++  +  
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 197 LVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN----LPSKYFQCWNAMKFVNASQ 252
           L+L        + E  ++     +  ++L +          L +           +    
Sbjct: 203 LILHMKQHI-LLLEIFVD-VTSSVECLELRDTDLDTFHFSELSTGETN-----SLIKKFT 255

Query: 253 LRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP 312
            R ++                              ++ E +                ++ 
Sbjct: 256 FRNVK------------------------------ITDESLF---------------QVM 270

Query: 313 TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN 353
             +  + GL  L  + N L+      F  LT L+ + L  N
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 47/310 (15%), Positives = 95/310 (30%), Gaps = 35/310 (11%)

Query: 74  DLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRC 132
             SS  L   IP+      +   +S N +T    S +    +L  L L+ N ++  +   
Sbjct: 37  KGSSGSLNS-IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE-- 92

Query: 133 LGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA-WLGTL 191
                D+F +  +L  +D+S+N L           + L  ++L  N             L
Sbjct: 93  ----EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS 251
           ++L IL + + +   +I+      G   L  +++  +    +   K  +        N S
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQ-SYEPKSLK-----SIQNVS 201

Query: 252 QLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEI 311
            L                         L          + ++    T             
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLEL-RDTDLDTFHFSELSTGETN------------ 248

Query: 312 PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQ-LTGLTFLE 370
             S+      + + + + +L   +      ++ L  L+ S N     +P      LT L+
Sbjct: 249 --SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQ 304

Query: 371 FFNVSHNNLT 380
              +  N   
Sbjct: 305 KIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 45/303 (14%), Positives = 92/303 (30%), Gaps = 73/303 (24%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
           S  +L   IPS +    ++  LDLS+N ++  +       +       NL  + ++ N +
Sbjct: 39  SSGSLN-SIPSGL--TEAVKSLDLSNNRIT-YIS------NSDLQRCVNLQALVLTSNGI 88

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
                 S ++   LE +DL  N + +   +W   LS L  L L  N +   + E  +   
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSH 147

Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYY 276
             KL+I+ + N      +  K F           + L  +                    
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFA--------GLTFLEELE------------------- 180

Query: 277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336
                                    + ++      P S+ +++ +  L L        + 
Sbjct: 181 -------------------------IDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL 214

Query: 337 S-CFGDLTKLESLDLSNNWFSGQIPQQLTGLTF--------LEFFNVSHNNLTGPIPEAN 387
                  + +E L+L +         +L+                 ++  +L   +   N
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 388 QFP 390
           Q  
Sbjct: 275 QIS 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 39/238 (16%), Positives = 74/238 (31%), Gaps = 42/238 (17%)

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
           ++ +DL NN+I     + L     L  LVL SN  +  I E         L  +DLS N 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TI-EEDSFSSLGSLEHLDLSYNY 111

Query: 230 FTGNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQ 286
            + NL S +F+          S L ++    N   +      + +               
Sbjct: 112 LS-NLSSSWFK--------PLSSLTFLNLLGNPYKTLGETSLFSHLTK------------ 150

Query: 287 MLSYEKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKL 345
                     L  + + +     +I     A L  L+ L +  ++L+ + P     +  +
Sbjct: 151 ----------LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 346 ESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL 403
             L L        +   +   + +E   +   +L         F    +   +     
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-----FHFSELSTGETNSLIKK 253

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 44/259 (16%)

Query: 18  LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSS 77
            + + L  N++  ++P      + +N + L L  N L   D   + F   +    LDLS 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFR-ACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSD 89

Query: 78  NFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS 137
           N     +                     P+    L  L+ L L    L  EL        
Sbjct: 90  NAQLRSVD--------------------PATFHGLGRLHTLHLDRCGLQ-ELG------P 122

Query: 138 DTFMNGSNLGIIDMSHNLLQGRIPK-SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDI 196
             F   + L  + +  N LQ  +P  +  +   L  + L  N+I          L  LD 
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 197 LVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS----- 251
           L+L  N     +  H       +L  + L  N+ +  LP++      A++++  +     
Sbjct: 182 LLLHQNRVA-HVHPHAFR-DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

Query: 252 ---QLRYMRNFLSSYFSFD 267
              + R +  +L  +    
Sbjct: 239 CDCRARPLWAWLQKFRGSS 257

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 52/284 (18%), Positives = 89/284 (31%), Gaps = 66/284 (23%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
            +  L   +P  I   ++   + L  N +S  +P      + +F    NL I+ +  N+L
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVP------AASFRACRNLTILWLHSNVL 68

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPA-WLGTLSELDILVLQSNNFHGEIKEHKMEC 215
                 +    A+LE +DL +N  + +        L  L  L L       E+    +  
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-EL-GPGLFR 126

Query: 216 GFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHY 275
           G   L+ + L +N+    LP   F+        +   L ++                   
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFR--------DLGNLTHLF------------------ 159

Query: 276 YYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335
                                     L  N        +   L  L  L L  N +    
Sbjct: 160 --------------------------LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 336 PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379
           P  F DL +L +L L  N  S    + L  L  L++  ++ N  
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 42/203 (20%), Positives = 67/203 (33%), Gaps = 19/203 (9%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNS-LTGFDQHPSVFPWS 67
               +  ++L  L L SN L   I        +     L+LS N+ L      P+ F   
Sbjct: 49  AASFRACRNLTILWLHSNVL-ARIDAAAFT-GLALLEQLDLSDNAQLRSV--DPATFHGL 104

Query: 68  SGEFTLDLSSNFLQGPIPA----PPTKTRHYLVSKNNLTGEIPS-WICNLSSLYILDLSD 122
               TL L    LQ  +           ++  +  N L   +P     +L +L  L L  
Sbjct: 105 GRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG 162

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID 182
           N +S  +P         F    +L  + +  N +    P +  +   L  + L  N +  
Sbjct: 163 NRIS-SVP------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 183 TFPAWLGTLSELDILVLQSNNFH 205
                L  L  L  L L  N + 
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 293 IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN 352
           IP     + L  N        S    + L +L L +N L     + F  L  LE LDLS+
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 353 NWFSGQIPQQ-LTGLTFLEFFNVSHNNLT 380
           N     +      GL  L   ++    L 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 19/124 (15%)

Query: 297 LTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPS-CFGDLTKLESLDLSNNW 354
           L  + LS N     +  +    L  L  L L    L+  +    F  L  L+ L L +N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 355 FSGQIPQQ-LTGLTFLEFFNVSHNNLTGPIPEA--------------NQFPTFDSSSFDG 399
               +P      L  L    +  N ++     A              N+       +F  
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 400 NSGL 403
              L
Sbjct: 200 LGRL 203

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 45/268 (16%), Positives = 82/268 (30%), Gaps = 62/268 (23%)

Query: 88  PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLG 147
           P  T++  +S N L         +   L +LDLS   +   +          + + S+L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE------DGAYQSLSHLS 79

Query: 148 IIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI--IDTFPAWLGTLSELDILVLQSNNFH 205
            + ++ N +Q     + +  + L+ +      +  ++ FP   G L  L  L +  N   
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQ 137

Query: 206 GEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFS 265
              K  +       L  +DLS+N    ++     +           Q+  +   L     
Sbjct: 138 -SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLR--------VLHQMPLLNLSLD---- 183

Query: 266 FDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLS 325
                                               LS N  +  I         L+ L+
Sbjct: 184 ------------------------------------LSLNPMN-FIQPGAFKEIRLKELA 206

Query: 326 LANNNLEGHIPSCFGDLTKLESLDLSNN 353
           L  N L+      F  LT L+ + L  N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 22/198 (11%)

Query: 17  HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS 76
            L+ LDLS  ++   I       S+ + S L L+ N +         F   S    L   
Sbjct: 53  ELQVLDLSRCEIQ-TIEDGAYQ-SLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAV 108

Query: 77  SNFLQGPIPA----PPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPR 131
              L   +           +   V+ N +   ++P +  NL++L  LDLS N +   +  
Sbjct: 109 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY- 165

Query: 132 CLGNFSDTFMNGSNLGII----DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
                         + ++    D+S N +   I         L+ + L  NQ+       
Sbjct: 166 -----CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 188 LGTLSELDILVLQSNNFH 205
              L+ L  + L +N + 
Sbjct: 220 FDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 297 LTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWF 355
           L+ +IL+ N     +     + L  LQ L     NL        G L  L+ L++++N  
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 356 -SGQIPQQLTGLTFLEFFNVSHNNLT 380
            S ++P+  + LT LE  ++S N + 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 4e-10
 Identities = 56/357 (15%), Positives = 108/357 (30%), Gaps = 51/357 (14%)

Query: 33  PKWLLN----PSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPP 88
            +WLL       +    +++  +  L+     P       G   L +    L      P 
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 89  TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGEL--PRCLGNFSDTFMNGSNL 146
            + R   V   +L     +      +  ++    ++    +        +         L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 147 GIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHG 206
              ++S       +   L +C  L+ ++  N   + T    +  L  L         F  
Sbjct: 352 FRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS- 409

Query: 207 EIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCW--NAMKFVNASQLRYMRNFLSSYF 264
                        L+ VD    ++  +L SK+        M++ +   L      L+   
Sbjct: 410 ------------TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-- 455

Query: 265 SFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVL 324
                                           +T + LS N     +P ++A L+ L+VL
Sbjct: 456 -LCHLEQLLL----------------------VTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 325 SLANNNLEGHIPSCFGDLTKLESLDLSNNWFSG-QIPQQLTGLTFLEFFNVSHNNLT 380
             ++N LE ++     +L +L+ L L NN        Q L     L   N+  N+L 
Sbjct: 492 QASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 26/183 (14%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSV 63
            +      L    + K      + L    P            +L           ++  +
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL----------ENSVL 436

Query: 64  FPWSSGEFTLDLSSNFLQGPIPAPP-TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
               +    L L+   L             H  +S N L   +P  +  L  L +L  SD
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495

Query: 123 NNLS--GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG-RIPKSLANCAVLEIIDLGNNQ 179
           N L     +                L  + + +N LQ     + L +C  L +++L  N 
Sbjct: 496 NALENVDGVANL-----------PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

Query: 180 IID 182
           +  
Sbjct: 545 LCQ 547

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 46/288 (15%), Positives = 83/288 (28%), Gaps = 48/288 (16%)

Query: 72  TLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWI-CNLSSLYILDLSDNNLSGEL 129
                 + +   IP+  P            L   I          L  +++S N++   +
Sbjct: 13  VFLCQESKVTE-IPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 130 PRCLGNFSDTFMNGSNLGIIDMSH-NLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188
                   D F N   L  I +   N L    P++  N   L+ + + N  I        
Sbjct: 71  EA------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

Query: 189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV 248
               +  +L +Q N     I+ +       +  I+ L+ N     + +  F         
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN------GT 177

Query: 249 NASQLRYMR-NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGF 307
              +L     N L    +  F+G         +                   + +S    
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHG--------ASG---------------PVILDISRTRI 214

Query: 308 HGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354
           H  +P+    NLK L+  S  N      +P+    L  L    L+   
Sbjct: 215 H-SLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 32/217 (14%), Positives = 70/217 (32%), Gaps = 36/217 (16%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSK-NSLTGFDQHPSVFPWSSGEFTLD 74
             L+ +++S N +   I   + + ++     + + K N+L     +P  F        L 
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFS-NLPKLHEIRIEKANNLLYI--NPEAFQNLPNLQYLL 110

Query: 75  LSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWI-CNLSSLYILDLSDNNLSGELPRCL 133
           +S+  ++                       +P     +     +LD+ DN     +    
Sbjct: 111 ISNTGIK----------------------HLPDVHKIHSLQKVLLDIQDNINIHTIE--- 145

Query: 134 GNFSDTFMN-GSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLS 192
               ++F+       I+ ++ N +Q     +     + E+    NN + +         S
Sbjct: 146 ---RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 193 ELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
              IL +     H  +  + +E    KLR     N  
Sbjct: 203 GPVILDISRTRIH-SLPSYGLE-NLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 47/286 (16%), Positives = 93/286 (32%), Gaps = 54/286 (18%)

Query: 106 PSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA 165
              IC+ S+  +    ++ ++ E+P  L           N   +      L+     + +
Sbjct: 3   HHRICHCSN-RVFLCQESKVT-EIPSDLP---------RNAIELRFVLTKLRVIQKGAFS 51

Query: 166 NCAVLEIIDLGNNQIIDTFPAW----LGTLSELDILVLQSNNFHGEIKEHKMECGFPKLR 221
               LE I++  N +++   A     L  L E+ I   ++NN    I   +     P L+
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE--KANNLL-YI-NPEAFQNLPNLQ 107

Query: 222 IVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM 281
            + +SN     +LP  +          ++ Q   +                      +  
Sbjct: 108 YLLISNTGIK-HLPDVHKI--------HSLQKVLL---------------------DIQD 137

Query: 282 SNKGQMLSY---EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPS- 337
           +     +       + +    + L+ NG   EI  S  N   L  L+L++NN    +P+ 
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPND 196

Query: 338 CFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
            F   +    LD+S           L  L  L   +  +      +
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 45/202 (22%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
           P   +   +L+ L +S+  +            + +   ++  +                 
Sbjct: 97  PEAFQNLPNLQYLLISNTGIK----------HLPDVHKIHSLQK---------------- 130

Query: 69  GEFTLDLSSNFLQGPIPAP-----PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDN 123
               LD+  N     I          ++    ++KN +  EI +   N + L  L+LSDN
Sbjct: 131 --VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDT 183
           N   ELP      +D F   S   I+D+S   +       L N   L      N + + T
Sbjct: 188 NNLEELP------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT 241

Query: 184 FPAWLGTLSELDILVLQSNNFH 205
                  L  L    L +   H
Sbjct: 242 L----EKLVALMEASL-TYPSH 258

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 6e-10
 Identities = 57/380 (15%), Positives = 119/380 (31%), Gaps = 61/380 (16%)

Query: 96  VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL 155
           + K ++T  +      L+S+  +  +++++   +   +           N+  + ++ N 
Sbjct: 28  LKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLP-------NVTKLFLNGNK 76

Query: 156 LQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC 215
           L   I K L N   L  + L  N+I D     L  L +L  L L+ N     I +     
Sbjct: 77  LT-DI-KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNG----ISDINGLV 128

Query: 216 GFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHY 275
             P+L  + L NN  T ++                ++L  +   L               
Sbjct: 129 HLPQLESLYLGNNKIT-DITV----------LSRLTKLDTLS--LED------------- 162

Query: 276 YYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335
                  N+   +        L  + LS N        ++A LK L VL L +       
Sbjct: 163 -------NQISDIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKP 213

Query: 336 PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSS 395
            +   +L    ++  ++   S   P+ ++     E  NV  +        +  F    + 
Sbjct: 214 INHQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271

Query: 396 S-----FDGNSGLCGKPLFKECENSEAPANEDQIADSKALLSGAFDWEIVLIGYAGGVVA 450
                 F G      K ++    + +    + ++     + +     +   +        
Sbjct: 272 GKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEK 331

Query: 451 GLVLGFNFSTGIVGWFLEKL 470
                +NF+T  +      L
Sbjct: 332 NGGHEWNFNTDYMSGNDFTL 351

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 38/238 (15%)

Query: 4   NLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN---SLTGFDQH 60
            +F    F          +L    +   + +      + +   +  + +   S+ G    
Sbjct: 13  QIFPDDAF----AETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYL 64

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIP-APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILD 119
           P+V         L L+ N L    P           + +N +  ++ S + +L  L  L 
Sbjct: 65  PNV-------TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLS 115

Query: 120 LSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ 179
           L  N +S ++        +  ++   L  + + +N +       L+    L+ + L +NQ
Sbjct: 116 LEHNGIS-DI--------NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ 164

Query: 180 IIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK 237
           I D  P  L  L++L  L L  N+    I + +   G   L +++L +        + 
Sbjct: 165 ISDIVP--LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINH 216

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 38/279 (13%), Positives = 86/279 (30%), Gaps = 54/279 (19%)

Query: 111 NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVL 170
             +     +L   +++  +       +       ++  I  +++ ++  + + +     +
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELN-------SIDQIIANNSDIK-SV-QGIQYLPNV 67

Query: 171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230
             + L  N++ D  P  L  L  L  L L  N     IK+        KL+ + L +N  
Sbjct: 68  TKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGI 121

Query: 231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSY 290
           + ++          +       L    N ++                   ++        
Sbjct: 122 S-DIN-------GLVHLPQLESLYLGNNKITDITVLS------------RLTK------- 154

Query: 291 EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350
                 L  + L  N    +I   +A L  LQ L L+ N++          L  L+ L+L
Sbjct: 155 ------LDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 204

Query: 351 SNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
            +     +     + L        +  +L  P   ++  
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 36/216 (16%)

Query: 18  LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT---GFDQHPSVFPWSSGEFTLD 74
           +      S      I +   + +       NL K S+T     ++  S+         + 
Sbjct: 1   MGETITVSTP----IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSI-------DQII 49

Query: 75  LSSNFLQ--GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRC 132
            +++ ++    I   P  T+ +L + N LT +I   + NL +L  L L +N +       
Sbjct: 50  ANNSDIKSVQGIQYLPNVTKLFL-NGNKLT-DIKP-LTNLKNLGWLFLDENKIK-----D 101

Query: 133 LGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLS 192
           L +  D       L  + + HN +       L +   LE + LGNN+I D     L  L+
Sbjct: 102 LSSLKDL----KKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDITV--LSRLT 153

Query: 193 ELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNN 228
           +LD L L+ N     I +     G  KL+ + LS N
Sbjct: 154 KLDTLSLEDNQ----ISDIVPLAGLTKLQNLYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 30/200 (15%)

Query: 11  FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT---GFDQHPSVFPWS 67
            ++   ++  L L+ NKL  +I       +++N  +L L +N +           +    
Sbjct: 60  GIQYLPNVTKLFLNGNKLT-DIKPL---TNLKNLGWLFLDENKIKDLSSLKDLKKLK--- 112

Query: 68  SGEFTLDLSSNFLQ--GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
               +L L  N +     +   P     YL   N +T +I   +  L+ L  L L DN +
Sbjct: 113 ----SLSLEHNGISDINGLVHLPQLESLYL-GNNKIT-DITV-LSRLTKLDTLSLEDNQI 165

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP 185
           S        +        + L  + +S N +     ++LA    L++++L + + ++   
Sbjct: 166 S--------DIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPI 214

Query: 186 AWLGTLSELDILVLQSNNFH 205
                L   + +     +  
Sbjct: 215 NHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 8e-07
 Identities = 42/228 (18%), Positives = 70/228 (30%), Gaps = 35/228 (15%)

Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
               A     +L    + D        L+ +D ++  +++    IK  +     P +  +
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKL 70

Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM-- 281
            L+ N  T   P             N   L    N +    S             L    
Sbjct: 71  FLNGNKLTDIKPLT--------NLKNLGWLFLDENKIKDLSSLK-------DLKKLKSLS 115

Query: 282 --SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCF 339
              N    ++       L ++ L +N       T ++ L  L  LSL +N +   I    
Sbjct: 116 LEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-L 171

Query: 340 GDLTKLESLDLSNNWFSGQIP--QQLTGLTFLEFFNVSHNNLTGPIPE 385
             LTKL++L LS N     I   + L GL  L+   +           
Sbjct: 172 AGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPIN 215

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 10/86 (11%)

Query: 297 LTAVILSSNGFHGEIP--TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNW 354
           +   I  S      I               +L   ++         +L  ++ +  +N+ 
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD 54

Query: 355 FSGQIPQQLTGLTFLEFFNVSHNNLT 380
               + Q +  L  +    ++ N LT
Sbjct: 55  IK-SV-QGIQYLPNVTKLFLNGNKLT 78

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 46/278 (16%), Positives = 86/278 (30%), Gaps = 56/278 (20%)

Query: 111 NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVL 170
            L++   +    +N++            T  +   +  +      +   I   +     L
Sbjct: 17  ALANAIKIAAGKSNVTDT---------VTQADLDGITTLSAFGTGVT-TIE-GVQYLNNL 65

Query: 171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF 230
             ++L +NQI D  P  L  L+++  L L  N     +K      G   ++ +DL++   
Sbjct: 66  IGLELKDNQITDLAP--LKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDLTSTQI 119

Query: 231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSY 290
           T   P             N   L    N +++                  ++N       
Sbjct: 120 TDVTPLA--------GLSNLQVLYLDLNQITNISPLA------------GLTN------- 152

Query: 291 EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL 350
                 L  + + +       P  +ANL  L  L   +N +     S    L  L  + L
Sbjct: 153 ------LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHL 202

Query: 351 SNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQ 388
            NN  S   P  L   + L    +++  +T      N 
Sbjct: 203 KNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 42/224 (18%), Positives = 75/224 (33%), Gaps = 34/224 (15%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN---SLTGFDQHPSVFPWSS 68
                +   +    + +   + +      +   + L+       ++ G     ++     
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQ----ADLDGITTLSAFGTGVTTIEGVQYLNNL----- 65

Query: 69  GEFTLDLSSNFLQGPIP-APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127
               L+L  N +    P    TK     +S N L   + + I  L S+  LDL+   ++ 
Sbjct: 66  --IGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD 121

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
                           SNL ++ +  N +       LA    L+ + +GN Q+ D  P  
Sbjct: 122 ---------VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP-- 168

Query: 188 LGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231
           L  LS+L  L    N     I +       P L  V L NN  +
Sbjct: 169 LANLSKLTTLKADDNK----ISDISPLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 47/291 (16%), Positives = 88/291 (30%), Gaps = 65/291 (22%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
            K+N+T  +     +L  +  L      ++           +     +NL  +++  N +
Sbjct: 27  GKSNVTDTVT--QADLDGITTLSAFGTGVTT---------IEGVQYLNNLIGLELKDNQI 75

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
              +   L N   +  ++L  N + +     +  L  +  L L S      I +     G
Sbjct: 76  T-DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ----ITDVTPLAG 127

Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY---MRNFLSSYFSFDFYGYFP 273
              L+++ L  N  T N+                + L+Y       +S            
Sbjct: 128 LSNLQVLYLDLNQIT-NISP----------LAGLTNLQYLSIGNAQVSDLTPLA------ 170

Query: 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG 333
                  +S              LT +    N    +I   +A+L  L  + L NN +  
Sbjct: 171 ------NLSK-------------LTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISD 209

Query: 334 HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP 384
             P    + + L  + L+N   + Q       L      NV       PI 
Sbjct: 210 VSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP---NVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 35/223 (15%)

Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
               A    I  G + + DT       L  +  L          +   +       L  +
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGL 68

Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM-- 281
           +L +N  T +L                ++L    N L +  +            S+    
Sbjct: 69  ELKDNQIT-DLA-------PLKNLTKITELELSGNPLKNVSAIA-------GLQSIKTLD 113

Query: 282 --SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCF 339
             S +   ++       L  + L  N     I   +A L  LQ LS+ N  +    P   
Sbjct: 114 LTSTQITDVTPLAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--L 169

Query: 340 GDLTKLESLDLSNNWFSGQIP--QQLTGLTFLEFFNVSHNNLT 380
            +L+KL +L   +N    +I     L  L  L   ++ +N ++
Sbjct: 170 ANLSKLTTLKADDN----KISDISPLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 30/196 (15%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT---GFDQHPSVFPWSS 68
           ++   +L  L+L  N++  ++   L N  +   + L LS N L          S+     
Sbjct: 59  VQYLNNLIGLELKDNQIT-DLAP-LKN--LTKITELELSGNPLKNVSAIAGLQSI----- 109

Query: 69  GEFTLDLSSNFLQGPIP-APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127
              TLDL+S  +    P A  +  +   +  N +T  I   +  L++L  L + +  +S 
Sbjct: 110 --KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD 165

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
                         N S L  +    N +   I   LA+   L  + L NNQI D  P  
Sbjct: 166 ---------LTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP-- 212

Query: 188 LGTLSELDILVLQSNN 203
           L   S L I+ L +  
Sbjct: 213 LANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 48/195 (24%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT---GFDQHPSVFPWSS 68
           +   + +K LDL+S ++    P       + N   L L  N +T         ++     
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISPLAGLTNLQ---- 154

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
               L + +  +                  ++LT      + NLS L  L   DN +S  
Sbjct: 155 ---YLSIGNAQV------------------SDLTP-----LANLSKLTTLKADDNKISDI 188

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188
            P           +  NL  + + +N +    P  LAN + L I+ L N  I +    + 
Sbjct: 189 SP---------LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYN 237

Query: 189 GTLSELDILVLQSNN 203
             L   +++   S  
Sbjct: 238 NNLVVPNVVKGPSGA 252

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           +  + +++          I+ L  L+ L +   ++          LT L  LD+S++   
Sbjct: 68  IKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 357 GQIPQQLTGLTFLEFFNVSHNNL 379
             I  ++  L  +   ++S+N  
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 21/167 (12%)

Query: 41  MQNFSYLNLSKN---SLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP-APPTKTRHYLV 96
           M + +Y+ L+      LTG +   ++         L +++       P +  +      +
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIK-------DLTINNIHATNYNPISGLSNLERLRI 95

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
              ++T +    +  L+SL +LD+S +     +   +            +  ID+S+N  
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-------KVNSIDLSYNGA 148

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN 203
              I   L     L+ +++  + + D     +    +L+ L   S  
Sbjct: 149 ITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168
           I    ++  L +++ + +          S      SNL  + +    +      +L+   
Sbjct: 62  IEYAHNIKDLTINNIHATN-----YNPIS----GLSNLERLRIMGKDVTSDKIPNLSGLT 112

Query: 169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNN 228
            L ++D+ ++   D+    + TL +++ + L  N    +I   K     P+L+ +++  +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK---TLPELKSLNIQFD 169

Query: 229 SFT 231
              
Sbjct: 170 GVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 14/137 (10%)

Query: 96  VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL 155
           ++  + T   P  I  LS+L  L +   +++ +    L   +       +L ++D+SH+ 
Sbjct: 73  INNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLT-------SLTLLDISHSA 123

Query: 156 LQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC 215
               I   +     +  IDL  N  I      L TL EL  L +Q +     + +++   
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDG----VHDYRGIE 178

Query: 216 GFPKLRIVDLSNNSFTG 232
            FPKL  +   + +  G
Sbjct: 179 DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           LT + +S +     I T I  L  +  + L+ N     I      L +L+SL++  +   
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLTG 381
                 +     L         + G
Sbjct: 173 DYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           LT + L++     ++ T I     ++ L++ N +      +    L+ LE L +     +
Sbjct: 46  LTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVT 101

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
                 L+GLT L   ++SH+     I   
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 19/141 (13%)

Query: 98  KNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157
             + T  I      ++SL  + L++ N++      +           N+  + +++    
Sbjct: 31  GQSSTANIT--EAQMNSLTYITLANINVTDLTG--IEYAH-------NIKDLTINNIHAT 79

Query: 158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC-- 215
                 ++  + LE + +    +       L  L+ L +L +  +       +  +    
Sbjct: 80  N--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA----HDDSILTKIN 133

Query: 216 GFPKLRIVDLSNNSFTGNLPS 236
             PK+  +DLS N    ++  
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNN---LEGHIPSCFGDLTKLESLDLSNN 353
             A +    G       + A +  L  ++LAN N   L G           ++ L ++N 
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNI 76

Query: 354 WFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
             +   P  ++GL+ LE   +   ++T      
Sbjct: 77  HATNYNP--ISGLSNLERLRIMGKDVTSDKIPN 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 1/96 (1%)

Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPS-CFGDLTKLESLDLSNNWFSGQIPQQLTGLTF 368
           +    +   + L  L + N     H+       L +L +L +  +      P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 369 LEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLC 404
           L   N+S N L     +  Q  +       GN   C
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 297 LTAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWF 355
           LT + + +      +    +  L  L+ L++  + L    P  F    +L  L+LS N  
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 356 SGQIPQQLTGLTFLEFFNVSHNNLT 380
                + + GL+ L+   +S N L 
Sbjct: 93  ESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 7/102 (6%)

Query: 104 EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS 163
           +    +    +L  L + +      L                L  + +  + L+   P +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLE------LRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH 205
                 L  ++L  N +       +  LS L  LVL  N  H
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 20/170 (11%)

Query: 72  TLDLSSNFLQ----GPIPAPPTKTRHYLVSKNNLTGEIPSWI-CNLSSLYILDLSDNNLS 126
            LDLS N L        P   T     L+S N+L   I S     + +L  LDLS N+L 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 127 GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK-SLANCAVLEIIDLGNNQI----I 181
             L          F +   L ++ + +N +   + + +  + A L+ + L  NQI    +
Sbjct: 102 -TLD------EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 182 DTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231
           +        L +L +L L SN           +        + L NN   
Sbjct: 154 ELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 297 LTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPS-CFGDLTKLESLDLSNNW 354
           L  + LSSN  H  +   + ++L+ L+VL L NN++   +    F D+ +L+ L LS N 
Sbjct: 90  LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147

Query: 355 FSGQIP----QQLTGLTFLEFFNVSHNNLT 380
            S + P    +    L  L   ++S N L 
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 48/262 (18%), Positives = 74/262 (28%), Gaps = 93/262 (35%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
           SK  L   +P  +   S   +LDLS NNLS  L         T    +NL  + +SHN L
Sbjct: 26  SKQQLP-NVPQSL--PSYTALLDLSHNNLS-RLRA-----EWTPTRLTNLHSLLLSHNHL 76

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
                ++      L  +DL +N +  T        S+L                      
Sbjct: 77  NFISSEAFVPVPNLRYLDLSSNHL-HTLDE--FLFSDL---------------------- 111

Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY---MRNFLSSYFSFDFYGYFP 273
              L ++ L NN     +    F+        + +QL+     +N +S            
Sbjct: 112 -QALEVLLLYNNHIV-VVDRNAFE--------DMAQLQKLYLSQNQISR----------- 150

Query: 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG 333
                                                       L  L +L L++N L+ 
Sbjct: 151 ----------------------------FPVELIKD-----GNKLPKLMLLDLSSNKLKK 177

Query: 334 HIPSCFGDLTKL--ESLDLSNN 353
              +    L       L L NN
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 63/196 (32%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
            +L +L LS N L+  I        + N  YL+LS N L        +F           
Sbjct: 64  TNLHSLLLSHNHLN-FISSEAFV-PVPNLRYLDLSSNHLHTL--DEFLFS---------- 109

Query: 76  SSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGN 135
                                              +L +L +L L +N++   + R    
Sbjct: 110 -----------------------------------DLQALEVLLLYNNHIV-VVDR---- 129

Query: 136 FSDTFMNGSNLGIIDMSHNLLQGRIP----KSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
             + F + + L  + +S N +  R P    K       L ++DL +N++       L  L
Sbjct: 130 --NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 192 SEL--DILVLQSNNFH 205
                + L L +N   
Sbjct: 187 PAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 40/196 (20%), Positives = 61/196 (31%), Gaps = 44/196 (22%)

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS 251
           S   +L L  NN    ++          L  + LS+N     + S+ F            
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFV--------PVP 88

Query: 252 QLRYMR---NFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFH 308
            LRY+    N L +   F F            +               L  ++L +N   
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSD----------LQA-------------LEVLLLYNNHIV 125

Query: 309 GEIPTSI-ANLKGLQVLSLANNNLEGHIP----SCFGDLTKLESLDLSNNWFSGQIPQQL 363
             +  +   ++  LQ L L+ N +    P         L KL  LDLS+N         L
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 364 TGLTFLEFFNVS-HNN 378
             L       +  HNN
Sbjct: 184 QKLPAWVKNGLYLHNN 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 30/169 (17%)

Query: 72  TLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELP 130
            ++     L   +P   P  T    +S+N L     + +   + L  L+L    L+ +L 
Sbjct: 14  EVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ 71

Query: 131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGT 190
                          LG +D+SHN LQ  +P        L ++D+  N++       L  
Sbjct: 72  --------VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 191 LSELDILVLQSNN--------FHGEIKEHKMECGFPKLRIVDLSNNSFT 231
           L EL  L L+ N                       PKL  + L+NN+ T
Sbjct: 123 LGELQELYLKGNELKTLPPGLLT----------PTPKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 11/158 (6%)

Query: 223 VDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMS 282
           V+    + T  LP             + + L    N L ++       Y      +L   
Sbjct: 15  VNCDKRNLT-ALPPDLP--------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-R 64

Query: 283 NKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDL 342
            +   L  +    +L  + LS N     +P     L  L VL ++ N L          L
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 343 TKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
            +L+ L L  N      P  LT    LE  ++++NNLT
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 46/214 (21%), Positives = 67/214 (31%), Gaps = 47/214 (21%)

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
             I+ L  N +     A L   + L  L L       E+ + +++   P L  +DLS+N 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 230 FTGNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYFS--FDFYGYFPHYYYSLTMSNK 284
              +LP                 L  +    N L+S                  L     
Sbjct: 89  LQ-SLPLL---------GQTLPALTVLDVSFNRLTSLPLGALR----------GLGE--- 125

Query: 285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLT 343
                       L  + L  N     +P  +      L+ LSLANNNL          L 
Sbjct: 126 ------------LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 344 KLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN 377
            L++L L  N     IP+   G   L F  +  N
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 39/175 (22%), Positives = 61/175 (34%), Gaps = 22/175 (12%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS 68
              L     L  L+L   +L   +    ++ ++     L+LS N L      P +     
Sbjct: 48  LATLMPYTRLTQLNLDRAEL-TKLQ---VDGTLPVLGTLDLSHNQLQSL---PLLGQTLP 100

Query: 69  GEFTLDLSSNFLQGPIPA----PPTKTRHYLVSKNNLTGEIPSWIC-NLSSLYILDLSDN 123
               LD+S N L   +P        + +   +  N L   +P  +      L  L L++N
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN 158

Query: 124 NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNN 178
           NL+ ELP              NL  + +  N L   IPK      +L    L  N
Sbjct: 159 NLT-ELPA------GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
              V          +P  +   K   +L L+ N L     +     T+L  L+L      
Sbjct: 12  HLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA--E 66

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLT 380
               Q    L  L   ++SHN L 
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQ 90

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 46/249 (18%), Positives = 77/249 (30%), Gaps = 32/249 (12%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWL---LNPSMQNFSYLNLSKNSLT--GFDQHPSVFPW 66
           L+ +   K L +S+N ++    + L   L  S      L L    +T         +   
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 67  SSGEFTLDLSSNFLQGP--------IPAPPTKTRHYLVSKNNLTGE----IPSWICNLSS 114
            +    L L SN L           +  P ++ R   + +  +T +    +   +    S
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 115 LYILDLSDNNLSGELPRCLGNFSDTFMN-GSNLGIIDMSHNLLQGR----IPKSLANCAV 169
           L  L L+ N L  E         +T +  G  L  + +                LA    
Sbjct: 286 LKELSLAGNELGDE---GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 170 LEIIDLGNNQIIDT-----FPAWLGTLSELDILVLQSNNFHGEIKEH--KMECGFPKLRI 222
           L  + + NN++ D              S L +L L   +                  LR 
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 223 VDLSNNSFT 231
           +DLSNN   
Sbjct: 403 LDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 45/253 (17%), Positives = 84/253 (33%), Gaps = 40/253 (15%)

Query: 12  LKQQKHLKALDLSSNKLHGN----IPKWLLNPSMQNFSYLNLSKNSLT--GFDQHPSVFP 65
           L+    L  L+L SN+L       + + L  PS +    L+L    LT  G     S   
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI-QKLSLQNCCLTGAGCGVLSSTLR 110

Query: 66  WSSGEFTLDLSSNFLQGP--------IPAPPTKTRHYLVSKNNLTGE----IPSWICNLS 113
                  L LS N L           +  P  +     +   +L+      + S +    
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 114 SLYILDLSDNNLSGE----LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR----IPKSLA 165
               L +S+N+++      L + L +      +   L  + +    +       +   +A
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKD------SPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 166 NCAVLEIIDLGNNQIIDT-----FPAWLGTLSELDILVLQSNNFHGEIKEH--KMECGFP 218
           + A L  + LG+N++ D       P  L   S L  L +       +      ++     
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 219 KLRIVDLSNNSFT 231
            L+ + L+ N   
Sbjct: 285 SLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 46/241 (19%), Positives = 77/241 (31%), Gaps = 28/241 (11%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP--SVFPWSSGEFTL 73
             +++LD+   +L       LL P +Q    + L    LT        S    +     L
Sbjct: 3   LDIQSLDIQCEELSDARWAELL-PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 74  DLSSNFLQGP--------IPAPPTKTRHYLVSKNNLTGE----IPSWICNLSSLYILDLS 121
           +L SN L           +  P  K +   +    LTG     + S +  L +L  L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR----IPKSLANCAVLEIIDLGN 177
           DN L     + L            L  + + +  L       +   L      + + + N
Sbjct: 122 DNLLGDAGLQLLCEG--LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 178 NQIIDTFPAWLGTL-----SELDILVLQSNNFHGEIKEH--KMECGFPKLRIVDLSNNSF 230
           N I +     L         +L+ L L+S     +       +      LR + L +N  
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 231 T 231
            
Sbjct: 240 G 240

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 39/307 (12%), Positives = 83/307 (27%), Gaps = 69/307 (22%)

Query: 96  VSKNNLTGEIPSWIC-NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN 154
           +    L+    + +   L    ++ L D  L+        + S        L  +++  N
Sbjct: 10  IQCEELSDARWAELLPLLQQCQVVRLDDCGLT---EARCKDISSALRVNPALAELNLRSN 66

Query: 155 LLQGRIPKSLANC-----AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIK 209
            L       +          ++ + L N  +     A  G LS      L++        
Sbjct: 67  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG---AGCGVLSS----TLRTL------- 112

Query: 210 EHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS--QLRYMRNFLSSYFSFD 267
                   P L+ + LS+N   G+   +       +        +L+     LS+     
Sbjct: 113 --------PTLQELHLSDNLL-GDAGLQLLC--EGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 268 FYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIA-----NLKGLQ 322
                              +L  +        + +S+N  +      +      +   L+
Sbjct: 162 L----------------ASVLRAKPD---FKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 323 VLSLANNNL--EG--HIPSCFGDLTKLESLDLSNNWFSGQ-----IPQQLTGLTFLEFFN 373
            L L +  +  +    +         L  L L +N           P  L   + L    
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 374 VSHNNLT 380
           +    +T
Sbjct: 263 IWECGIT 269

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 36/225 (16%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN---SLTGFDQHPSVFPWSS 68
                     +L    +   + +      + +   +  + +   S+ G    P+V     
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYLPNV----- 70

Query: 69  GEFTLDLSSNFLQ--GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS 126
               L L+ N L    P+         +L  +N +  ++ S + +L  L  L L  N +S
Sbjct: 71  --TKLFLNGNKLTDIKPLANLKNLGWLFL-DENKVK-DLSS-LKDLKKLKSLSLEHNGIS 125

Query: 127 GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA 186
                 +        +   L  + + +N +       L+    L+ + L +NQI D  P 
Sbjct: 126 -----DINGLV----HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP- 173

Query: 187 WLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231
            L  L++L  L L  N+    I + +   G   L +++L +    
Sbjct: 174 -LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 49/219 (22%)

Query: 164 LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV 223
               A     +L    + D        L+ +D ++  +++    IK  +     P +  +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKL 73

Query: 224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSN 283
            L+ N  T   P             N   L    N +    S               +  
Sbjct: 74  FLNGNKLTDIKPLA--------NLKNLGWLFLDENKVKDLSSLK------------DLKK 113

Query: 284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT 343
                        L ++ L  NG        + +L  L+ L L NN +     +    LT
Sbjct: 114 -------------LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLSRLT 156

Query: 344 KLESLDLSNNWFSGQIP--QQLTGLTFLEFFNVSHNNLT 380
           KL++L L +N    QI     L GLT L+   +S N+++
Sbjct: 157 KLDTLSLEDN----QISDIVPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 31/197 (15%), Positives = 71/197 (36%), Gaps = 28/197 (14%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT---GFDQHPSVFPWSS 68
           ++   ++  L L+ NKL  +I       +++N  +L L +N +           +     
Sbjct: 64  IQYLPNVTKLFLNGNKLT-DIKPL---ANLKNLGWLFLDENKVKDLSSLKDLKKLK---- 115

Query: 69  GEFTLDLSSNFLQGPIP-APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG 127
              +L L  N +          +     +  N +T +I   +  L+ L  L L DN +S 
Sbjct: 116 ---SLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS- 169

Query: 128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW 187
                  +        + L  + +S N +     ++LA    L++++L + + ++     
Sbjct: 170 -------DIVP-LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINH 219

Query: 188 LGTLSELDILVLQSNNF 204
              L   + +     + 
Sbjct: 220 QSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 313 TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP--QQLTGLTFLE 370
           T ++ L  L  LSL +N +   I      LTKL++L LS N     I   + L GL  L+
Sbjct: 150 TVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKN----HISDLRALAGLKNLD 203

Query: 371 FFNVSHNNLT 380
              +      
Sbjct: 204 VLELFSQECL 213

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 35/166 (21%)

Query: 67  SSGEFTLDLSSNFLQGPIPAPPTKTRH-YLVSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
           SSG   +D+            P   R   L +  +  G+I        +L  L L +  L
Sbjct: 2   SSGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL 61

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP 185
                  + N          L  +++S N + G +         L  ++L  N++ D   
Sbjct: 62  I-----SVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--- 109

Query: 186 AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT 231
                +S L+ L                      L+ +DL N   T
Sbjct: 110 -----ISTLEPLK-----------------KLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 278 SLTMSNKGQMLSYEKIPYILTAVILSSNGFH-GEIPTSIANLKGLQVLSLANNNLEGHIP 336
            + M  +  +    + P  +  ++L +   + G+I    A    L+ LSL N  L   + 
Sbjct: 7   GMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV- 64

Query: 337 SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
           S    L KL+ L+LS N   G +      L  L   N+S N L 
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS--GQIPQQLTGLTFLEFF 372
           +  L  L+ L L+ N + G +      L  L  L+LS N       + + L  L  L+  
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSL 125

Query: 373 NVSHNNLT 380
           ++ +  +T
Sbjct: 126 DLFNCEVT 133

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 34/138 (24%)

Query: 94  YLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSH 153
            L +  +  G++         L  L   +  L+      + N        + L  +++S 
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKL----NKLKKLELSD 73

Query: 154 NLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKM 213
           N + G +      C  L  ++L  N+I D        LS ++ L                
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKD--------LSTIEPLK--------------- 110

Query: 214 ECGFPKLRIVDLSNNSFT 231
                 L+ +DL N   T
Sbjct: 111 --KLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 297 LTAVILSSNGF-HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWF 355
           +  ++L ++    G++       + L+ LS  N  L   I +    L KL+ L+LS+N  
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRV 76

Query: 356 SGQIPQQLTGLTFLEFFNVSHNNLT 380
           SG +         L   N+S N + 
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSG-QIPQQLTGLTFLEFFN 373
           +  L  L+ L L++N + G +         L  L+LS N        + L  L  L+  +
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 374 VSHNNLT 380
           + +  +T
Sbjct: 120 LFNCEVT 126

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 297 LTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPS-CFGDLTKLESLDLSNNW 354
           ++ + +S +    ++ +    NL  +  + + N     +I      +L  L+ L + N  
Sbjct: 57  ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116

Query: 355 FSGQIPQQ--LTGLTFLEFFNVSHNNLTGPIPE 385
                P    +          ++ N     IP 
Sbjct: 117 LK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/244 (12%), Positives = 73/244 (29%), Gaps = 43/244 (17%)

Query: 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN 203
                  ++   +Q RIP    +    + + L    +          L  +  + +  + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 204 FHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMR---NFL 260
              +++ H       K+  +++ N      +     +            L+++      L
Sbjct: 67  TLQQLESHSFY-NLSKVTHIEIRNTRNLTYIDPDALK--------ELPLLKFLGIFNTGL 117

Query: 261 SSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT-SIANL- 318
                      FP      +                   + ++ N +   IP  +   L 
Sbjct: 118 KM---------FPDLTKVYSTDI-------------FFILEITDNPYMTSIPVNAFQGLC 155

Query: 319 KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQ-LTGL-TFLEFFNVSH 376
                L L NN     +     + TKL+++ L+ N +   I +    G+ +     +VS 
Sbjct: 156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

Query: 377 NNLT 380
            ++T
Sbjct: 215 TSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 18/136 (13%)

Query: 111 NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP--KSLANCA 168
           NLS +  +++ +      +        D       L  + + +  L+   P    + +  
Sbjct: 78  NLSKVTHIEIRNTRNLTYID------PDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTD 130

Query: 169 VLEIIDLGNNQIIDTFPAWL--GTLSELDILVLQSNNFHGEIKEHKMECGF--PKLRIVD 224
           +  I+++ +N  + + P     G  +E   L L +N F   ++ +     F   KL  V 
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY----AFNGTKLDAVY 185

Query: 225 LSNNSFTGNLPSKYFQ 240
           L+ N +   +    F 
Sbjct: 186 LNKNKYLTVIDKDAFG 201

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 97  SKNNLTGEIP--SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSN-LGIIDMSH 153
               L    P  + + +    +IL+++DN     +P       + F    N    + + +
Sbjct: 113 FNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP------VNAFQGLCNETLTLKLYN 165

Query: 154 NLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP--AWLGTLSELDILVLQSNNFH 205
           N     +     N   L+ + L  N+ +      A+ G  S   +L +   +  
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 57/404 (14%), Positives = 115/404 (28%), Gaps = 112/404 (27%)

Query: 9   PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNL----SKNSLTGFD------ 58
           PN+  +  H   + L  + +   + + L +   +N   L L    +  +   F+      
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 59  ---QHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSK--NNLTGEIPSWICNLS 113
              +   V  + S   T  +S +     +     K+   L+ K  +    ++P  +   +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQDLPREVLTTN 326

Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTF-----MNGSNLG-IIDMSHNLLQG--------- 158
              +      ++  E  R   +   T+     +N   L  II+ S N+L+          
Sbjct: 327 PRRL------SIIAESIR---DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 159 --------RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVL----------- 199
                    IP       +L +I             W   +    ++V+           
Sbjct: 378 LSVFPPSAHIPT-----ILLSLI-------------WFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 200 QSNNF----HG---EIKEHKMECGFPKL--RIVD-------LSNNSFTGNLPSKYFQCWN 243
           Q             E+K          L   IVD         ++        +YF    
Sbjct: 420 QPKESTISIPSIYLELKVKLEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 244 AMKFVNASQLRYMRNFLSSYFSFDF------YGYFPHYYYSLTMSNKGQMLSYEKIPYI- 296
                N      M  F   +  F F      +           ++   Q+  Y+   YI 
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YIC 535

Query: 297 -----LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335
                   ++ +   F  +I  ++   K   +L +A    +  I
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 56/232 (24%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN---SLTGFDQHPSVFPWSS 68
                +    +L    +   +        +      N   +   SL G     ++     
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS----QKELSGVQNFNGDNSNIQSLAGMQFFTNL----- 65

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
               L LS N +                  ++L+      + +L+ L  L ++ N L   
Sbjct: 66  --KELHLSHNQI------------------SDLSP-----LKDLTKLEELSVNRNRLK-- 98

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188
                   +   +  + L  + + +N L+     SL +   LEI+ + NN++       L
Sbjct: 99  --------NLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIVM--L 146

Query: 189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240
           G LS+L++L L  N     I          K+  +DL+      N P KY  
Sbjct: 147 GFLSKLEVLDLHGNE----ITNTGGLTRLKKVNWIDLTGQKCV-NEPVKYQP 193

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 28/195 (14%), Positives = 61/195 (31%), Gaps = 27/195 (13%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN---SLTGFDQHPSVFPWSS 68
            K+   ++  +  ++ +  ++          N   L+LS N    L+       +     
Sbjct: 37  QKELSGVQNFNGDNSNIQ-SLAGMQ---FFTNLKELHLSHNQISDLSPLKDLTKLE---- 88

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
               L ++ N L+     P        +  N L       + +L +L IL + +N L   
Sbjct: 89  ---ELSVNRNRLKNLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-- 141

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188
                 +        S L ++D+  N +       L     +  IDL   + ++    + 
Sbjct: 142 ------SIVM-LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

Query: 189 GTLSELDILVLQSNN 203
             L   + +      
Sbjct: 193 PELYITNTVKDPDGR 207

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 313 TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFF 372
            S+ +LK L++LS+ NN L+  I    G L+KLE LDL  N  +      LT L  + + 
Sbjct: 122 DSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 373 NVSHNNLT 380
           +++     
Sbjct: 178 DLTGQKCV 185

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 293 IPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLS 351
           IP     + L++N F     T I   L  L+ ++ +NN +       F   + +  + L+
Sbjct: 30  IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89

Query: 352 NNWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
           +N       +   GL  L+   +  N +T
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           L  +  S+N        +     G+  + L +N LE      F  L  L++L L +N   
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN--- 115

Query: 357 GQI----PQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDS 394
            +I         GL+ +   ++  N +T  +        FD+
Sbjct: 116 -RITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPG----AFDT 151

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 22/88 (25%), Positives = 36/88 (40%)

Query: 293 IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN 352
           +P  +T + L  N      P + +  K L+ + L+NN +    P  F  L  L SL L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 353 NWFSGQIPQQLTGLTFLEFFNVSHNNLT 380
           N  +        GL  L+   ++ N + 
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKIN 117

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 20/191 (10%)

Query: 18  LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSS 77
            K LDL SNKL  ++P    +  +     L L+ N L        +F       TL ++ 
Sbjct: 39  TKKLDLQSNKL-SSLPSKAFH-RLTKLRLLYLNDNKLQTLP--AGIFKELKNLETLWVTD 94

Query: 78  NFLQGPIPA----PPTKTRHYLVSKNNLTGEIPSWIC-NLSSLYILDLSDNNLSGELPRC 132
           N LQ  +P              + +N L   +P  +  +L+ L  L L  N L   LP  
Sbjct: 95  NKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLP-- 149

Query: 133 LGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL-ANCAVLEIIDLGNNQIIDTFPAWLGTL 191
                  F   ++L  + + +N L+ R+P+        L+ + L NNQ+         +L
Sbjct: 150 ----KGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 192 SELDILVLQSN 202
            +L +L LQ N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 18/93 (19%)

Query: 297 LTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWF 355
           L  + ++ N     +P  +   L  L  L L  N L+   P  F  LTKL  L L  N  
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-- 143

Query: 356 SGQIPQQLT--------GLTFLEFFNVSHNNLT 380
                 +L          LT L+   + +N L 
Sbjct: 144 ------ELQSLPKGVFDKLTSLKELRLYNNQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 293 IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN 352
           IP     + L SN        +   L  L++L L +N L+      F +L  LE+L +++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 353 NWFSGQIPQQL-TGLTFLEFFNVSHNNLT 380
           N     +P  +   L  L    +  N L 
Sbjct: 95  NKLQ-ALPIGVFDQLVNLAELRLDRNQLK 122

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 14/132 (10%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
               +  ++ + +  L +   L LS NN+       + + S       NL I+ +  NL+
Sbjct: 33  MIPPIE-KMDATLSTLKACKHLALSTNNIE-----KISSLSGM----ENLRILSLGRNLI 82

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
           + +I    A    LE + +  NQI       +  L  L +L + SNN      E      
Sbjct: 83  K-KIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYM-SNNKITNWGEIDKLAA 138

Query: 217 FPKLRIVDLSNN 228
             KL  + L+ N
Sbjct: 139 LDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFL 369
           ++  +++ LK  + L+L+ NN+E  I S    +  L  L L  N    +I         L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 370 EFFNVSHNNLT 380
           E   +S+N + 
Sbjct: 96  EELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 19/125 (15%)

Query: 109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCA 168
           +  + +L IL L  N +            +       L  + +S+N +   +   +    
Sbjct: 66  LSGMENLRILSLGRNLIK--------KIENLDAVADTLEELWISYNQIA-SL-SGIEKLV 115

Query: 169 VLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIKEHKMECG--------FPK 219
            L ++ + NN+I +      L  L +L+ L+L  N  + + KE+              P 
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175

Query: 220 LRIVD 224
           L+ +D
Sbjct: 176 LKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 302 LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP- 360
           L  N    +I    A    L+ L ++ N +   + S    L  L  L +SNN    +I  
Sbjct: 77  LGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNN----KITN 129

Query: 361 ----QQLTGLTFLEFFNVSHNNLTGPIPEANQFP 390
                +L  L  LE   ++ N L     E N   
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 4e-05
 Identities = 21/156 (13%), Positives = 55/156 (35%), Gaps = 25/156 (16%)

Query: 215 CGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPH 274
              P L+ +++ +     +           ++ +  S L  +   L  Y   + YG+   
Sbjct: 190 KPRPNLKSLEIISGGLPDS----------VVEDILGSDLPNLEK-LVLYVGVEDYGF--- 235

Query: 275 YYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIAN---LKGLQVLSLANNNL 331
                 M+    + S ++ P  L  + +        +         L  L+ + ++   L
Sbjct: 236 ---DGDMNVFRPLFSKDRFPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 332 --EG--HIPSCFGDLTKLESLDLSNNWFSGQIPQQL 363
             EG   +      +  L+ +++  N+ S ++ ++L
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 6e-05
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 21/174 (12%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEF 71
            K + +LK+L++ S  L  ++ + +L   + N   L L                    + 
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV-----------EDYGFDG 237

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICN---LSSLYILDLSDNNLSGE 128
            +++                +   +        +         L  L  +D+S   L+ E
Sbjct: 238 DMNVFRPLFSKD---RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID 182
             R L +  D      +L  I+M +N L   + K L   ++   ID+ ++Q  D
Sbjct: 295 GARLLLDHVDKI---KHLKFINMKYNYLSDEMKKELQK-SLPMKIDVSDSQEYD 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 7e-04
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 317 NLKGLQVLSLANNNLEGHIPSCFGD---LTKLESLDLSNNWFSG----QIPQQLTGLTFL 369
               L+ L + +   +  +   F +   L +LE++D+S    +      +   +  +  L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 370 EFFNVSHNNLT 380
           +F N+ +N L+
Sbjct: 310 KFINMKYNYLS 320

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 34/133 (25%)

Query: 99  NNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG 158
                 I +    L     +D SDN +     R L  F         L  + +++N +  
Sbjct: 28  GYKIPVIENLGATLDQFDAIDFSDNEI-----RKLDGFP----LLRRLKTLLVNNNRICR 78

Query: 159 RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFP 218
                      L  + L NN +++        L +LD L                     
Sbjct: 79  IGEGLDQALPDLTELILTNNSLVE--------LGDLDPLA-----------------SLK 113

Query: 219 KLRIVDLSNNSFT 231
            L  + +  N  T
Sbjct: 114 SLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS--GQIPQQLTGLTFLEFF 372
              L+ L+ L + NN +          L  L  L L+NN     G +   L  L  L + 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYL 118

Query: 373 NVSHNNLT 380
            +  N +T
Sbjct: 119 CILRNPVT 126

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 53/258 (20%), Positives = 86/258 (33%), Gaps = 45/258 (17%)

Query: 11  FLKQQKHLKALDLSSNKLHGNIPKWL---LNPSMQNFSYLNLSKNSLT--GFDQHPSVFP 65
           F      + +LDLS N L+      L      +  + + LNLS NSL     D+   +  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 66  WSSGEFT-LDLSSNFLQGP--------IPAPPTKTRHYLVSKNNLTGEIPSWICNL---- 112
                 T L+LS NFL           + A P       +  N+ + +  S         
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 113 -SSLYILDLSDNNLSGELPRCLGNFSDTFMNG-SNLGIIDMSHNLLQGRIPKSLA----- 165
            +S+  L+L  N+L  +                +N+  +++  N L  +    LA     
Sbjct: 137 PASITSLNLRGNDLGIK---SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 166 NCAVLEIIDLGNNQIIDTFPAWLG--------TLSELDILVLQSNNFHGE----IKEHKM 213
             A +  +DL  N +     A L          +  L+   L  N  HG     +K  K 
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN---LCLNCLHGPSLENLKLLKD 250

Query: 214 ECGFPKLRIVDLSNNSFT 231
                 L+ V L  +   
Sbjct: 251 SL--KHLQTVYLDYDIVK 266

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 293 IPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN 352
           IP     + L S G       +   L  L  L+L  N L+      F DLT+L +L L+N
Sbjct: 33  IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92

Query: 353 NWFS---GQIPQQLTGLTFLEFFNVSHNNLT 380
           N  +     +   LT L  L    +  N L 
Sbjct: 93  NQLASLPLGVFDHLTQLDKL---YLGGNQLK 120

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 39/243 (16%)

Query: 12  LKQQKHLKALDLSSNKLHGNIPKWLLN--PSMQNFSYLNLSKNSLTGFDQHPSVFPWSSG 69
           L +   L  + LS N       + L++         +L L  N L          P +  
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---------PQAGA 140

Query: 70  EFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGE----IPSWICNLSSLYILDLSDNNL 125
           +    L    +       P         +N L             +   L+ + +  N +
Sbjct: 141 KIARALQELAVNKKAKNAPPLRSIIC-GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR----IPKSLANCAVLEIIDLGNNQII 181
             E         +       L ++D+  N         +  +L +   L  + L +  + 
Sbjct: 200 RPE--GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 182 DTFPAWLG---------TLSELDILVLQSNNFHGE----IKEHKMECGFPKLRIVDLSNN 228
               A +           L  L    LQ N    +    +K   ++   P L  ++L+ N
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLR---LQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGN 313

Query: 229 SFT 231
            F+
Sbjct: 314 RFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 47/278 (16%), Positives = 87/278 (31%), Gaps = 66/278 (23%)

Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR----IPKSLANCAV 169
           S+    L  + ++ E  + +       +   ++  I +S N +       + +++A+   
Sbjct: 5   SIEGKSLKLDAITTEDEKSVF---AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 170 LEIIDLGNNQI---IDTFPAWLGTLSE-------LDILVLQSNNFHGE--------IKEH 211
           LEI +  +       D  P  L  L +       L  + L  N F           + +H
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 212 KMECGFPKLRIVDLSNNSFT----GNLPSKYFQCWNAMKFVNASQLRYM---RNFLSSYF 264
                   L  + L NN         +     +     K  NA  LR +   RN L    
Sbjct: 122 T------PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--- 172

Query: 265 SFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE-----IPTSIANLK 319
                        + +M    +     +   +L  V +  NG   E     +   +A  +
Sbjct: 173 -------------NGSMKEWAKTF---QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 320 GLQVLSLANNNL--EG--HIPSCFGDLTKLESLDLSNN 353
            L+VL L +N     G   +         L  L L++ 
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	485
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.94
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.41
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.97
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	82.57

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.2e-49  Score=421.69  Aligned_cols=401  Identities=33%  Similarity=0.487  Sum_probs=293.4

Q ss_pred             CCCC-CCCChhhhCCCCCCEEECCCCcCCCCCCcc-cccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            2 SCNL-FEFPNFLKQQKHLKALDLSSNKLHGNIPKW-LLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         2 ~n~l-~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      +|.+ +.+|..|+++++|++|++++|.+.+.+|.. +.  .+++|++|++++|.+++..|. .+..+...|++|++++|.
T Consensus       303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~--~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~  379 (768)
T 3rgz_A          303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL--KMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNN  379 (768)
T ss_dssp             SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT--TCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECCSSE
T ss_pred             CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh--cCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEccCCC
Confidence            4555 466666666666666666666666666654 55  566666666666666655554 344444344777777777


Q ss_pred             ccccCCCC-----CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC
Q 039564           80 LQGPIPAP-----PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN  154 (485)
Q Consensus        80 l~~~~~~~-----~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n  154 (485)
                      +++..+..     +++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|..++.       +++|++|++++|
T Consensus       380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-------l~~L~~L~L~~n  452 (768)
T 3rgz_A          380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-------LSKLRDLKLWLN  452 (768)
T ss_dssp             EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-------CTTCCEEECCSS
T ss_pred             cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-------CCCCCEEECCCC
Confidence            76655543     456888888888888778888888888888888888888777765554       477788888888


Q ss_pred             cccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccC
Q 039564          155 LLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNL  234 (485)
Q Consensus       155 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  234 (485)
                      .+++.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+.+|..+  ..+++|++|++++|.+.+.+
T Consensus       453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~  530 (768)
T 3rgz_A          453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNI  530 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEEC
T ss_pred             cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcC
Confidence            8777777777777788888888887777777777777888888888888777777776  66777888888888777777


Q ss_pred             Chhhhcccccceeccccchhhhhcccccccccccc---------------------------------cCcCccc-----
Q 039564          235 PSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFY---------------------------------GYFPHYY-----  276 (485)
Q Consensus       235 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~-----  276 (485)
                      |.. +..+++|+.++++++.....++..+......                                 +..+..+     
T Consensus       531 p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  609 (768)
T 3rgz_A          531 PAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST  609 (768)
T ss_dssp             CGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred             CHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence            754 6677777777777655443322211110000                                 0000000     


Q ss_pred             -ceEEeeecCcc---cccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCC
Q 039564          277 -YSLTMSNKGQM---LSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN  352 (485)
Q Consensus       277 -~~l~~~~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  352 (485)
                       ....+..+...   ......+..|+.||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|||++
T Consensus       610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~  689 (768)
T 3rgz_A          610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS  689 (768)
T ss_dssp             TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence             00000000001   11122356799999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          353 NWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPLFKECENSE  416 (485)
Q Consensus       353 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~c~~~~  416 (485)
                      |+++|.+|..+..+++|++|++++|+++|.+|...++.++....|.|||.+||.|+. .|....
T Consensus       690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            999999999999999999999999999999999999999999999999999999986 886543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3e-44  Score=385.94  Aligned_cols=258  Identities=21%  Similarity=0.261  Sum_probs=188.3

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV  223 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  223 (485)
                      ++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+.+|..+++|++|++++|.+.+..+..+  ..+++|+.|
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEE
Confidence            568888888888887778888889999999999999988888889999999999999999887767776  788999999


Q ss_pred             EccCccCCccCChhhhcccccceeccccchhhhhcc-----cccccccccccCcC-------------------------
Q 039564          224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNF-----LSSYFSFDFYGYFP-------------------------  273 (485)
Q Consensus       224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~-------------------------  273 (485)
                      ++++|.+. .++...|..+++|+.++++++......     ..-..+.+.+..+|                         
T Consensus       344 ~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~  422 (844)
T 3j0a_A          344 DLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL  422 (844)
T ss_dssp             ECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred             ECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhh
Confidence            99999887 565556788888888888765422100     00000001111111                         


Q ss_pred             ---cccceEEeeecCcccc----cccccccccEEEcCCCcCc-----ccCchhhccCCCCCEEeCcCceecccCCccccC
Q 039564          274 ---HYYYSLTMSNKGQMLS----YEKIPYILTAVILSSNGFH-----GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGD  341 (485)
Q Consensus       274 ---~~~~~l~~~~~~~~~~----~~~~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  341 (485)
                         ..+..+++..+.....    ....++.|+.|++++|.+.     +..+..+..+++|++|+|++|++++..|..|..
T Consensus       423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  502 (844)
T 3j0a_A          423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH  502 (844)
T ss_dssp             TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred             hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence               1234444544443321    1222456667777777665     233455778888999999999998888888889


Q ss_pred             CCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          342 LTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       342 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      +++|+.|+|++|++++..|..+.  ++|+.|++++|++++.+|..  +..+..+++.+||+.|+|++
T Consensus       503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            99999999999999876666665  78999999999999887753  55778889999999999875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-43  Score=376.59  Aligned_cols=382  Identities=30%  Similarity=0.368  Sum_probs=235.2

Q ss_pred             CCCC-CCCChhhhCCCCCCEEECCCCcCCCCCCcccccCC-CCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            2 SCNL-FEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPS-MQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         2 ~n~l-~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      +|.+ +.+|..  .+++|++|++++|.+.+.+|..+.  . +++|++|++++|.+++..|. .+..+ ..|++|++++|.
T Consensus       256 ~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~--~~~~~L~~L~Ls~n~l~~~~p~-~~~~l-~~L~~L~L~~n~  329 (768)
T 3rgz_A          256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS--GACDTLTGLDLSGNHFYGAVPP-FFGSC-SLLESLALSSNN  329 (768)
T ss_dssp             SSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSC--TTCTTCSEEECCSSEEEECCCG-GGGGC-TTCCEEECCSSE
T ss_pred             CCcccCccCcc--ccCCCCEEECcCCccCCccCHHHH--hhcCcCCEEECcCCcCCCccch-HHhcC-CCccEEECCCCc
Confidence            4555 455544  566667777776666666666655  3 36666677766666655543 23333 333666666666


Q ss_pred             ccccCCCC----CCCCcEEEccCCcccccCChhhcCCC-CCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC
Q 039564           80 LQGPIPAP----PTKTRHYLVSKNNLTGEIPSWICNLS-SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN  154 (485)
Q Consensus        80 l~~~~~~~----~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n  154 (485)
                      +++.+|..    +++|++|++++|.+++.+|..+.+++ +|++|++++|.+++.+|..+..     ..+++|++|++++|
T Consensus       330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~-----~~~~~L~~L~L~~n  404 (768)
T 3rgz_A          330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ-----NPKNTLQELYLQNN  404 (768)
T ss_dssp             EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC-----STTCCCCEEECCSS
T ss_pred             ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh-----cccCCccEEECCCC
Confidence            66555432    56666666666666666666666665 6666666666666555544332     11245555555555


Q ss_pred             cccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccC
Q 039564          155 LLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNL  234 (485)
Q Consensus       155 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  234 (485)
                      .+++.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+  ..+++|++|++++|.+.+.+
T Consensus       405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~  482 (768)
T 3rgz_A          405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEI  482 (768)
T ss_dssp             EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCC
T ss_pred             ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcC
Confidence            5555555555555555555555555555555555555555555555555555555544  44555555555555555444


Q ss_pred             ChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc---cccccccEEEcCCCcCcccC
Q 039564          235 PSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE---KIPYILTAVILSSNGFHGEI  311 (485)
Q Consensus       235 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~  311 (485)
                      |.. +..+++|+.++++++.........+.      .+ ..+..+++..+...+..+   ..++.|+.|++++|.++|.+
T Consensus       483 p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~------~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          483 PSG-LSNCTNLNWISLSNNRLTGEIPKWIG------RL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             CGG-GGGCTTCCEEECCSSCCCSCCCGGGG------GC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred             CHH-HhcCCCCCEEEccCCccCCcCChHHh------cC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence            432 44455555555544432221111110      00 123334444443332221   12445555666655555444


Q ss_pred             c----------------------------------------------------------------------hhhccCCCC
Q 039564          312 P----------------------------------------------------------------------TSIANLKGL  321 (485)
Q Consensus       312 p----------------------------------------------------------------------~~~~~l~~L  321 (485)
                      |                                                                      ..+..+++|
T Consensus       555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L  634 (768)
T 3rgz_A          555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM  634 (768)
T ss_dssp             CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred             ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence            4                                                                      445557889


Q ss_pred             CEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCC
Q 039564          322 QVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGN  400 (485)
Q Consensus       322 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n  400 (485)
                      +.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|++++|+++|.+|.. ..+..+..+++++|
T Consensus       635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999976 46677888888888


Q ss_pred             CCCC
Q 039564          401 SGLC  404 (485)
Q Consensus       401 ~~lc  404 (485)
                      +...
T Consensus       715 ~l~g  718 (768)
T 3rgz_A          715 NLSG  718 (768)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            6543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-41  Score=352.98  Aligned_cols=347  Identities=16%  Similarity=0.187  Sum_probs=261.9

Q ss_pred             CCcccccCCCCCCcEEEccCCcCcCc-----------------CCCCCCC--CCCCCccEEEcCCCcccccCCCC---CC
Q 039564           32 IPKWLLNPSMQNFSYLNLSKNSLTGF-----------------DQHPSVF--PWSSGEFTLDLSSNFLQGPIPAP---PT   89 (485)
Q Consensus        32 ~p~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~~--~~~~lL~~L~l~~n~l~~~~~~~---~~   89 (485)
                      +|..++  .+++|++|+|++|.+++.                 .|. .+.  ++..+ ++|++++|.+.+.+|..   ++
T Consensus       198 ip~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L-~~L~L~~n~l~~~~p~~l~~l~  273 (636)
T 4eco_A          198 VSKAVM--RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDL-TDVEVYNCPNLTKLPTFLKALP  273 (636)
T ss_dssp             ECGGGG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTC-CEEEEECCTTCSSCCTTTTTCS
T ss_pred             CCHHHh--cccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCC-CEEEecCCcCCccChHHHhcCC
Confidence            677777  788889999998888883                 443 344  44444 88899888888887765   78


Q ss_pred             CCcEEEccCCc-ccc-cCChhhcCC------CCCCEEEcccCcccccCCC--ccccCcccccCCCCccEEEccCCccccc
Q 039564           90 KTRHYLVSKNN-LTG-EIPSWICNL------SSLYILDLSDNNLSGELPR--CLGNFSDTFMNGSNLGIIDMSHNLLQGR  159 (485)
Q Consensus        90 ~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~~~~~l~~L~~L~Ls~n~i~~~  159 (485)
                      +|++|++++|. +++ .+|..++.+      ++|++|++++|.++ .+|.  .++.       +++|++|++++|.++|.
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-------l~~L~~L~L~~N~l~g~  345 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK-------MKKLGMLECLYNQLEGK  345 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT-------CTTCCEEECCSCCCEEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc-------CCCCCEEeCcCCcCccc
Confidence            88888888887 887 788877776      88888888888888 7775  4444       47888888888888877


Q ss_pred             CCccccCCCCCcEEEccCCcccCCcChhhhCCCC-CCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhh
Q 039564          160 IPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE-LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY  238 (485)
Q Consensus       160 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  238 (485)
                      +| .|..+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+....+++|+.|++++|.+.+..|.. 
T Consensus       346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-  421 (636)
T 4eco_A          346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-  421 (636)
T ss_dssp             CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-
T ss_pred             hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh-
Confidence            88 7888888888888888886 56667888888 888888888887 6776653233447888888888887666644 


Q ss_pred             hc-------ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccc----------cccccEEE
Q 039564          239 FQ-------CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKI----------PYILTAVI  301 (485)
Q Consensus       239 ~~-------~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~L~~L~  301 (485)
                      +.       .+.+|+.++++++..... ....      ..-...+..+.+..+.........          ++.|+.|+
T Consensus       422 l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~------~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~  494 (636)
T 4eco_A          422 FDPLDPTPFKGINVSSINLSNNQISKF-PKEL------FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID  494 (636)
T ss_dssp             SCTTCSSCCCCCCEEEEECCSSCCCSC-CTHH------HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred             hcccccccccCCCCCEEECcCCccCcC-CHHH------HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEE
Confidence            33       455677777665432210 0000      000123455566555544222211          12899999


Q ss_pred             cCCCcCcccCchhhc--cCCCCCEEeCcCceecccCCccccCCCCCCEEEC------CCCcCcccCcccccCCCCCCEEe
Q 039564          302 LSSNGFHGEIPTSIA--NLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL------SNNWFSGQIPQQLTGLTFLEFFN  373 (485)
Q Consensus       302 Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~  373 (485)
                      +++|.++ .+|..+.  .+++|++|+|++|++++ +|..+..+++|+.|++      ++|++.+.+|..+..+++|+.|+
T Consensus       495 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~  572 (636)
T 4eco_A          495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ  572 (636)
T ss_dssp             CCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             CcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence            9999999 7888887  99999999999999996 8999999999999999      56788889999999999999999


Q ss_pred             ccCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          374 VSHNNLTGPIPEANQFPTFDSSSFDGNSGLCG  405 (485)
Q Consensus       374 l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~  405 (485)
                      +++|++ +.+|.... +.+..+++.+|+..|-
T Consensus       573 Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          573 IGSNDI-RKVNEKIT-PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCSSCC-CBCCSCCC-TTCCEEECCSCTTCEE
T ss_pred             CCCCcC-CccCHhHh-CcCCEEECcCCCCccc
Confidence            999999 67777533 7888999999998873

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.9e-40  Score=344.88  Aligned_cols=393  Identities=19%  Similarity=0.185  Sum_probs=235.1

Q ss_pred             ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccC-CCC
Q 039564            9 PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI-PAP   87 (485)
Q Consensus         9 p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~-~~~   87 (485)
                      |..|+++++|++|+|++|.+.+..|..|.  .+++|++|++++|.++++.+. .+..+ ..|++|++++|.+++.. |..
T Consensus        74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~l~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~  149 (606)
T 3t6q_A           74 EDTFQSQHRLDTLVLTANPLIFMAETALS--GPKALKHLFFIQTGISSIDFI-PLHNQ-KTLESLYLGSNHISSIKLPKG  149 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCSEECTTTTS--SCTTCCEEECTTSCCSCGGGS-CCTTC-TTCCEEECCSSCCCCCCCCTT
T ss_pred             hhhccCccccCeeeCCCCcccccChhhhc--ccccccEeeccccCcccCCcc-hhccC-CcccEEECCCCcccccCcccc
Confidence            33444444444444444444444444444  444444444444444443322 22222 22366666666655432 222


Q ss_pred             --CCCCcEEEccCCcccccCChhhcCCCCCC--EEEcccCcccccCCCccccC---------------------------
Q 039564           88 --PTKTRHYLVSKNNLTGEIPSWICNLSSLY--ILDLSDNNLSGELPRCLGNF---------------------------  136 (485)
Q Consensus        88 --~~~L~~L~l~~n~l~~~~p~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l---------------------------  136 (485)
                        +++|++|++++|.+++..|..|+.+++|+  .|++++|.+++..|..+...                           
T Consensus       150 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~  229 (606)
T 3t6q_A          150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS  229 (606)
T ss_dssp             CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEE
T ss_pred             cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhh
Confidence              56777777777777766666777777777  77777777765544332210                           


Q ss_pred             -----------------------------------------cccccCCCCccEEEccCCcccccCCccccCCCCCcEEEc
Q 039564          137 -----------------------------------------SDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL  175 (485)
Q Consensus       137 -----------------------------------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  175 (485)
                                                               ...|..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus       230 l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l  308 (606)
T 3t6q_A          230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL  308 (606)
T ss_dssp             EECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEEC
T ss_pred             eechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEEC
Confidence                                                     022555667777777777776 56666777777777777


Q ss_pred             cCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCC-hhhhcccccceeccccchh
Q 039564          176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLP-SKYFQCWNAMKFVNASQLR  254 (485)
Q Consensus       176 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~l~~~~~~  254 (485)
                      ++|.+.+..|..+..+++|++|++++|.+.+.++...+ ..+++|++|++++|.+.+... ...+..+++|+.++++++.
T Consensus       309 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  387 (606)
T 3t6q_A          309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE  387 (606)
T ss_dssp             TTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT-TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred             ccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh-hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc
Confidence            77777666666677777777777777776655554421 566777777777776663320 2235566666666665443


Q ss_pred             hhhcccccccc----------ccccc-C-----c--CcccceEEeeecCccccc---ccccccccEEEcCCCcCccc---
Q 039564          255 YMRNFLSSYFS----------FDFYG-Y-----F--PHYYYSLTMSNKGQMLSY---EKIPYILTAVILSSNGFHGE---  310 (485)
Q Consensus       255 ~~~~~~~~~~~----------~~~~~-~-----~--~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~---  310 (485)
                      ........+..          .+.+. .     +  ...+..+++..+......   ...++.|+.|++++|.+.+.   
T Consensus       388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  467 (606)
T 3t6q_A          388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ  467 (606)
T ss_dssp             CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC
T ss_pred             CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc
Confidence            22111111100          00000 0     1  123455555555443322   22356677777777777652   


Q ss_pred             CchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCC
Q 039564          311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQF  389 (485)
Q Consensus       311 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~  389 (485)
                      .+..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+..++.| .|++++|++++..|.. ..+
T Consensus       468 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l  546 (606)
T 3t6q_A          468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL  546 (606)
T ss_dssp             SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred             cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence            22457777778888888887777777777788888888888888887777778888888 8888888887665543 345


Q ss_pred             CCCCCCCCCCCCCCCCCCC
Q 039564          390 PTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       390 ~~l~~~~~~~n~~lc~~~~  408 (485)
                      +.+..+++.+||+.|+|+.
T Consensus       547 ~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          547 SQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             HTSSEEECTTCCEECSGGG
T ss_pred             CCCCEEeCCCCCccccCCc
Confidence            6677888999999998864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-40  Score=345.20  Aligned_cols=389  Identities=19%  Similarity=0.159  Sum_probs=275.1

Q ss_pred             CCCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            1 RSCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         1 ~~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      ++|.+..+|. .|+++++|++|++++|.+++..|..|.  .+++|++|++++|.+++..|. .+.++ ..|++|++++|.
T Consensus        40 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~-~~~~l-~~L~~L~L~~n~  115 (606)
T 3vq2_A           40 SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPG-SFSGL-TSLENLVAVETK  115 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTT-SSTTC-TTCCEEECTTSC
T ss_pred             CCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh--chhhcCEeECCCCcccccChh-hcCCc-ccCCEEEccCCc
Confidence            4677755544 888999999999999999977788888  899999999999999887665 34444 445999999999


Q ss_pred             ccccCCCC---CCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCc------------------
Q 039564           80 LQGPIPAP---PTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS------------------  137 (485)
Q Consensus        80 l~~~~~~~---~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------------------  137 (485)
                      +++..+..   +++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..|..++.+.                  
T Consensus       116 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~  195 (606)
T 3vq2_A          116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF  195 (606)
T ss_dssp             CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred             cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce
Confidence            88766443   8899999999999986 5688999999999999999988865554433221                  


Q ss_pred             ---cc---------------------------------------------------------------------------
Q 039564          138 ---DT---------------------------------------------------------------------------  139 (485)
Q Consensus       138 ---~~---------------------------------------------------------------------------  139 (485)
                         ..                                                                           
T Consensus       196 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~  275 (606)
T 3vq2_A          196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS  275 (606)
T ss_dssp             ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred             eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccc
Confidence               00                                                                           


Q ss_pred             ---------------------------ccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCC
Q 039564          140 ---------------------------FMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLS  192 (485)
Q Consensus       140 ---------------------------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  192 (485)
                                                 +..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.  ..+..++
T Consensus       276 ~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~  350 (606)
T 3vq2_A          276 DDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS--FKKVALP  350 (606)
T ss_dssp             GGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE--CCCCCCT
T ss_pred             ccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc--hhhccCC
Confidence                                       11122333333333333 1222 11 333333333333322111  1345677


Q ss_pred             CCCEEEeecccccccc--CCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccccc
Q 039564          193 ELDILVLQSNNFHGEI--KEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYG  270 (485)
Q Consensus       193 ~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~  270 (485)
                      +|++|++++|.+.+..  +..+  ..+++|++|++++|.+. .+| ..+..+++|+.+++.++.........     .+.
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~  421 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSD--LGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFS-----AFL  421 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHH--HCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTT-----TTT
T ss_pred             CCCEEECcCCccCCCcchhhhh--ccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChh-----hhh
Confidence            7888888888776542  4444  56777888888887776 455 34666777777777655433221100     011


Q ss_pred             CcCcccceEEeeecCccccc---ccccccccEEEcCCCcCcc-cCchhhccCCCCCEEeCcCceecccCCccccCCCCCC
Q 039564          271 YFPHYYYSLTMSNKGQMLSY---EKIPYILTAVILSSNGFHG-EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE  346 (485)
Q Consensus       271 ~~~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  346 (485)
                      .. ..+..+++..+......   ...++.|+.|++++|.+.+ .+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus       422 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  500 (606)
T 3vq2_A          422 SL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ  500 (606)
T ss_dssp             TC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence            11 23455566555544322   2346789999999999997 4788899999999999999999999999999999999


Q ss_pred             EEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCC-CCCCCCCCCCCCCCCCCCC
Q 039564          347 SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFP-TFDSSSFDGNSGLCGKPLF  409 (485)
Q Consensus       347 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~-~l~~~~~~~n~~lc~~~~~  409 (485)
                      .|++++|++++.+|..+..+++|+.|++++|+++. +|.. ..++ .+..+++.+||+.|+|+..
T Consensus       501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            99999999999889999999999999999999984 4543 3444 4788899999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.3e-39  Score=324.87  Aligned_cols=375  Identities=21%  Similarity=0.208  Sum_probs=290.2

Q ss_pred             CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564            2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ   81 (485)
Q Consensus         2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~   81 (485)
                      +++++.+|. +.  ++|++|+|++|.+++..|..|.  .+++|++|++++|.+.+..+. ..+.....|++|++++|.++
T Consensus        19 ~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~l~   92 (455)
T 3v47_A           19 NRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQFL   92 (455)
T ss_dssp             SSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCTTC
T ss_pred             CCCcccCCC-CC--CccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECc-ccccccccCCEEeCCCCccC
Confidence            567788887 33  8999999999999988888998  899999999999999865544 34555555599999999999


Q ss_pred             ccCCCC---CCCCcEEEccCCcccccCChh--hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcc
Q 039564           82 GPIPAP---PTKTRHYLVSKNNLTGEIPSW--ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL  156 (485)
Q Consensus        82 ~~~~~~---~~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i  156 (485)
                      +..|..   +++|++|++++|.+++..+..  |..+++|++|++++|.+++..|..      .|..+++|++|++++|.+
T Consensus        93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS------FFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG------GGGGCTTCCEEECTTCCB
T ss_pred             ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc------ccCCCCcccEEeCCCCcc
Confidence            887655   899999999999998755554  899999999999999999766753      244569999999999999


Q ss_pred             cccCCccccCC--CCCcEEEccCCcccCCcChhh--------hCCCCCCEEEeeccccccccCCcccc-CCCCCccEEEc
Q 039564          157 QGRIPKSLANC--AVLEIIDLGNNQIIDTFPAWL--------GTLSELDILVLQSNNFHGEIKEHKME-CGFPKLRIVDL  225 (485)
Q Consensus       157 ~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~l  225 (485)
                      ++..+..+..+  .+|+.|++++|.+.+..+..+        ..+++|++|++++|.+.+..+..+.. ...++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            98888888776  789999999999977655432        35688999999999998777665421 12378899999


Q ss_pred             cCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCccccc---ccccccccEEEc
Q 039564          226 SNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSY---EKIPYILTAVIL  302 (485)
Q Consensus       226 ~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~L  302 (485)
                      ++|...+....  ...+.......+...                  ....+..+++..+......   ...++.|+.|++
T Consensus       247 ~~~~~~~~~~~--~~~~~~~~~~~~~~~------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  306 (455)
T 3v47_A          247 SNSYNMGSSFG--HTNFKDPDNFTFKGL------------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL  306 (455)
T ss_dssp             TTCTTTSCCTT--CCSSCCCCTTTTGGG------------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccc--hhhhccCcccccccc------------------cccCceEEEecCccccccchhhcccCCCCCEEEC
Confidence            98866532211  111111110000000                  0012223333333222211   223567999999


Q ss_pred             CCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccccc
Q 039564          303 SSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP  382 (485)
Q Consensus       303 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  382 (485)
                      ++|.+.+..|..+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++.
T Consensus       307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence            99999988898999999999999999999988899999999999999999999988899999999999999999999976


Q ss_pred             CCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564          383 IPEA-NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       383 ~p~~-~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      .+.. ..++.++.+++.+||+.|+||.
T Consensus       387 ~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          387 PDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CHhHhccCCcccEEEccCCCcccCCCc
Confidence            5544 4677889999999999999873

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.1e-39  Score=336.66  Aligned_cols=133  Identities=19%  Similarity=0.136  Sum_probs=93.6

Q ss_pred             cceEEeeecCcccccc---cccccccEEEcCCCcCcccCc--------hhhccCCCCCEEeCcCceecccCCccccCCCC
Q 039564          276 YYSLTMSNKGQMLSYE---KIPYILTAVILSSNGFHGEIP--------TSIANLKGLQVLSLANNNLEGHIPSCFGDLTK  344 (485)
Q Consensus       276 ~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  344 (485)
                      +..+++..+.......   ..++.|+.|++++|.+++..+        ..+.++++|++|+|++|++++..+..|.++++
T Consensus       482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~  561 (680)
T 1ziw_A          482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE  561 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence            4555555554443222   235667777777777764321        22667777888888888777444456788888


Q ss_pred             CCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCC--CCCCCCCCCCCCCCCCCCCCC
Q 039564          345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN--QFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      |+.|++++|++++..+..|..+++|+.|++++|++++..|...  .++.+..+++.+|||.|+|+.
T Consensus       562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            8888888888886666677888888888888888887655432  456788889999999999985

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.8e-40  Score=341.54  Aligned_cols=360  Identities=14%  Similarity=0.169  Sum_probs=297.8

Q ss_pred             CCCCCCCChhhhCCCCCCEEECCCCcCCCC-----------------CCcccccCCCCCCcEEEccCCcCcCcCCCCCCC
Q 039564            2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGN-----------------IPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVF   64 (485)
Q Consensus         2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~-----------------~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   64 (485)
                      +|+++.+|+.|+++++|++|+|++|.+++.                 +|+.++...+++|++|++++|.+.+..|. .+.
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~  270 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLK  270 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHh
Confidence            467734999999999999999999999985                 88886522589999999999999998875 556


Q ss_pred             CCCCCccEEEcCCCc-ccc-cCCCC---C------CCCcEEEccCCcccccCCh--hhcCCCCCCEEEcccCcccccCCC
Q 039564           65 PWSSGEFTLDLSSNF-LQG-PIPAP---P------TKTRHYLVSKNNLTGEIPS--WICNLSSLYILDLSDNNLSGELPR  131 (485)
Q Consensus        65 ~~~~lL~~L~l~~n~-l~~-~~~~~---~------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~  131 (485)
                      ++..+ ++|++++|+ +++ .+|..   +      ++|++|++++|.++ .+|.  .|+++++|++|++++|.++|.+| 
T Consensus       271 ~l~~L-~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          271 ALPEM-QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TCSSC-CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             cCCCC-CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            66555 999999998 887 66654   3      89999999999999 8888  99999999999999999999998 


Q ss_pred             ccccCcccccCCCCccEEEccCCcccccCCccccCCCC-CcEEEccCCcccCCcChhhhCCC--CCCEEEeecccccccc
Q 039564          132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV-LEIIDLGNNQIIDTFPAWLGTLS--ELDILVLQSNNFHGEI  208 (485)
Q Consensus       132 ~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~  208 (485)
                      .++.+       ++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|++|++++|.+.+.+
T Consensus       348 ~~~~l-------~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~  418 (636)
T 4eco_A          348 AFGSE-------IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD  418 (636)
T ss_dssp             CCEEE-------EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred             hhCCC-------CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence            66554       89999999999999 88999999999 999999999997 6777777655  8999999999999888


Q ss_pred             CCccccC-------CCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccc--ccCcCcccceE
Q 039564          209 KEHKMEC-------GFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDF--YGYFPHYYYSL  279 (485)
Q Consensus       209 ~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l  279 (485)
                      |..+  .       .+++|++|++++|.+. .+|...+..+++|+.++++++... .+.........  ... -..+..+
T Consensus       419 p~~l--~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~-l~~L~~L  493 (636)
T 4eco_A          419 GKNF--DPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKN-TYLLTSI  493 (636)
T ss_dssp             TCSS--CTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTT-GGGCCEE
T ss_pred             hhhh--cccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccc-cCCccEE
Confidence            8776  4       6789999999999999 889888888999999998876543 21111110000  000 0156677


Q ss_pred             EeeecCcccccc----cccccccEEEcCCCcCcccCchhhccCCCCCEEeC------cCceecccCCccccCCCCCCEEE
Q 039564          280 TMSNKGQMLSYE----KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSL------ANNNLEGHIPSCFGDLTKLESLD  349 (485)
Q Consensus       280 ~~~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~  349 (485)
                      ++..+.......    ..++.|+.|++++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|+.|+
T Consensus       494 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~  572 (636)
T 4eco_A          494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ  572 (636)
T ss_dssp             ECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             ECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence            777776653222    256789999999999996 8999999999999999      56788889999999999999999


Q ss_pred             CCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564          350 LSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI  383 (485)
Q Consensus       350 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  383 (485)
                      +++|++ +.+|..+.  ++|+.|++++|++....
T Consensus       573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             CCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            999999 47888766  89999999999987643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.8e-39  Score=342.23  Aligned_cols=347  Identities=16%  Similarity=0.181  Sum_probs=231.9

Q ss_pred             CCcccccCCCCCCcEEEccCCcCcC-----------------cCCCCCCC-CCCCCccEEEcCCCcccccCCCC---CCC
Q 039564           32 IPKWLLNPSMQNFSYLNLSKNSLTG-----------------FDQHPSVF-PWSSGEFTLDLSSNFLQGPIPAP---PTK   90 (485)
Q Consensus        32 ~p~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~~-~~~~lL~~L~l~~n~l~~~~~~~---~~~   90 (485)
                      +|..++  .+++|++|+|++|.+++                 ..|. .+. ..+..|++|++++|.+.+.+|..   +++
T Consensus       440 IP~~l~--~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~  516 (876)
T 4ecn_A          440 ISKAIQ--RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE  516 (876)
T ss_dssp             ECGGGG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred             hhHHHh--cCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence            566666  67777777777777776                 1333 332 13333477777777777776654   677


Q ss_pred             CcEEEccCCc-ccc-cCChhhcCCC-------CCCEEEcccCcccccCCC--ccccCcccccCCCCccEEEccCCccccc
Q 039564           91 TRHYLVSKNN-LTG-EIPSWICNLS-------SLYILDLSDNNLSGELPR--CLGNFSDTFMNGSNLGIIDMSHNLLQGR  159 (485)
Q Consensus        91 L~~L~l~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~~~~~l~~L~~L~Ls~n~i~~~  159 (485)
                      |++|++++|. +++ .+|..++.++       +|+.|++++|.++ .+|.  .++.       +++|+.|++++|.++ .
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~-------L~~L~~L~Ls~N~l~-~  587 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK-------MVKLGLLDCVHNKVR-H  587 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT-------CTTCCEEECTTSCCC-B
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc-------CCCCCEEECCCCCcc-c
Confidence            7777777776 766 6666555444       7777777777777 6665  4433       467777777777777 6


Q ss_pred             CCccccCCCCCcEEEccCCcccCCcChhhhCCCC-CCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhh
Q 039564          160 IPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE-LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY  238 (485)
Q Consensus       160 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  238 (485)
                      +| .|..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+.....++|+.|++++|.+.+.+|...
T Consensus       588 lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~  664 (876)
T 4ecn_A          588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS  664 (876)
T ss_dssp             CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred             ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch
Confidence            66 6777777777777777775 56666677776 777777777776 56655522222347777777777665444211


Q ss_pred             --hc--ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccc----------cccccEEEcCC
Q 039564          239 --FQ--CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKI----------PYILTAVILSS  304 (485)
Q Consensus       239 --~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~L~~L~Ls~  304 (485)
                        ..  ...+|+.++++++.... +...      ...-...+..+.+..+.........          ++.|+.|+|++
T Consensus       665 ~~l~~~~~~~L~~L~Ls~N~L~~-lp~~------~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~  737 (876)
T 4ecn_A          665 CSMDDYKGINASTVTLSYNEIQK-FPTE------LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF  737 (876)
T ss_dssp             SCTTTCCCCCEEEEECCSSCCCS-CCHH------HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred             hhhccccCCCcCEEEccCCcCCc-cCHH------HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC
Confidence              11  22355555555432211 0000      0000123445555555443211111          22799999999


Q ss_pred             CcCcccCchhhc--cCCCCCEEeCcCceecccCCccccCCCCCCEEECCC------CcCcccCcccccCCCCCCEEeccC
Q 039564          305 NGFHGEIPTSIA--NLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSN------NWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       305 n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                      |+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..+..+++|+.|++++
T Consensus       738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~  815 (876)
T 4ecn_A          738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS  815 (876)
T ss_dssp             SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence            9999 7888887  89999999999999996 788899999999999976      788889999999999999999999


Q ss_pred             CcccccCCCCCCCCCCCCCCCCCCCCCC
Q 039564          377 NNLTGPIPEANQFPTFDSSSFDGNSGLC  404 (485)
Q Consensus       377 N~l~~~~p~~~~~~~l~~~~~~~n~~lc  404 (485)
                      |++ +.+|... .+.+..+++++|+...
T Consensus       816 N~L-~~Ip~~l-~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          816 NDI-RKVDEKL-TPQLYILDIADNPNIS  841 (876)
T ss_dssp             SCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred             CCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence            999 7788763 3678888888887654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-39  Score=324.14  Aligned_cols=339  Identities=18%  Similarity=0.138  Sum_probs=270.2

Q ss_pred             CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564            2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ   81 (485)
Q Consensus         2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~   81 (485)
                      ++++..+|..+.  +++++|+|++|.+++..|..|.  .+++|++|+|++|.++++.+. .+.+ +..|++|++++|.++
T Consensus        20 ~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~-~~~~-l~~L~~L~L~~n~l~   93 (477)
T 2id5_A           20 RKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPG-AFNN-LFNLRTLGLRSNRLK   93 (477)
T ss_dssp             SCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTT-TTTT-CTTCCEEECCSSCCC
T ss_pred             CCCcCcCCCCCC--CCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChh-hhhC-CccCCEEECCCCcCC
Confidence            456778887664  6889999999999877777888  889999999999998887664 3444 444499999999888


Q ss_pred             ccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc
Q 039564           82 GPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG  158 (485)
Q Consensus        82 ~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~  158 (485)
                      ...+..   +++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..       |..+++|++|++++|.+++
T Consensus        94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A           94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-------FSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-------STTCTTCCEEEEESCCCSS
T ss_pred             ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-------ccCCCCCCEEECCCCcCcc
Confidence            766543   788899999999888888888888899999999998888555543       4456889999999998886


Q ss_pred             cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhh
Q 039564          159 RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY  238 (485)
Q Consensus       159 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  238 (485)
                      ..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|...+.++...  ....+|+.|++++|.++ .+|...
T Consensus       167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~  243 (477)
T 2id5_A          167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT-AVPYLA  243 (477)
T ss_dssp             CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCC-SCCHHH
T ss_pred             cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCccc-ccCHHH
Confidence            666778888899999999988888777788888899999999888777777765  34568899999988887 566544


Q ss_pred             hcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccC
Q 039564          239 FQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANL  318 (485)
Q Consensus       239 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  318 (485)
                      +..                                                    ++.|+.|++++|.+.+..+..+..+
T Consensus       244 ~~~----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          244 VRH----------------------------------------------------LVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             HTT----------------------------------------------------CTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             hcC----------------------------------------------------ccccCeeECCCCcCCccChhhcccc
Confidence            433                                                    3348899999999998888889999


Q ss_pred             CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCC
Q 039564          319 KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFD  398 (485)
Q Consensus       319 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~  398 (485)
                      ++|++|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+....+.......+.
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~  351 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN  351 (477)
T ss_dssp             TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCT
T ss_pred             ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccC
Confidence            99999999999999888999999999999999999999877788899999999999999998754432112223345567


Q ss_pred             CCCCCCCCCC
Q 039564          399 GNSGLCGKPL  408 (485)
Q Consensus       399 ~n~~lc~~~~  408 (485)
                      ++...|..|.
T Consensus       352 ~~~~~C~~p~  361 (477)
T 2id5_A          352 RQQPTCATPE  361 (477)
T ss_dssp             TCCCBEEESG
T ss_pred             ccCceeCCch
Confidence            7777776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.8e-38  Score=328.60  Aligned_cols=394  Identities=19%  Similarity=0.176  Sum_probs=259.3

Q ss_pred             CCCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            1 RSCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         1 ~~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      ++|+|+.+|+ +|+++++|++|||++|+|++..|.+|.  .+++|++|+|++|+++++.+.  .|..+..|++|++++|.
T Consensus        60 s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~--~f~~L~~L~~L~Ls~N~  135 (635)
T 4g8a_A           60 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALG--AFSGLSSLQKLVAVETN  135 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGG--GGTTCTTCCEEECTTSC
T ss_pred             eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHH--HhcCCCCCCEEECCCCc
Confidence            4677866764 788888888888888888866666777  788888888888888876543  44544555888888888


Q ss_pred             ccccCCCC---CCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCc------------------
Q 039564           80 LQGPIPAP---PTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS------------------  137 (485)
Q Consensus        80 l~~~~~~~---~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------------------  137 (485)
                      +++..+..   +++|++|++++|.+++ ..|..++.+++|++|++++|++++..|..+..+.                  
T Consensus       136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~  215 (635)
T 4g8a_A          136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  215 (635)
T ss_dssp             CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence            88766543   7888888888888875 3577788888888888888887755444332211                  


Q ss_pred             --------------------------------------------------------------------------------
Q 039564          138 --------------------------------------------------------------------------------  137 (485)
Q Consensus       138 --------------------------------------------------------------------------------  137 (485)
                                                                                                      
T Consensus       216 i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~  295 (635)
T 4g8a_A          216 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL  295 (635)
T ss_dssp             ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred             cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence                                                                                            


Q ss_pred             ----ccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcCh-------------------hhhCCCCC
Q 039564          138 ----DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA-------------------WLGTLSEL  194 (485)
Q Consensus       138 ----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------~~~~l~~L  194 (485)
                          ..+....+++.+++.++.+...  ..+.....++.|++.+|.+....+.                   ....+++|
T Consensus       296 ~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L  373 (635)
T 4g8a_A          296 DGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL  373 (635)
T ss_dssp             EECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTC
T ss_pred             cchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccc
Confidence                0000011112222222221110  1122334455666665554332211                   12356778


Q ss_pred             CEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCc
Q 039564          195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPH  274 (485)
Q Consensus       195 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (485)
                      +.|++++|.+....+.......+.+|+.+++..+.... .+.. +..+..++.+++.............     .... .
T Consensus       374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~-----~~~l-~  445 (635)
T 4g8a_A          374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSV-----FLSL-R  445 (635)
T ss_dssp             CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSC-CTTCTTCCEEECTTSEEESTTSSCT-----TTTC-T
T ss_pred             ccchhhccccccccccccchhhhhhhhhhhcccccccc-cccc-ccccccccchhhhhccccccccccc-----cccc-c
Confidence            88888888775332222112456677777777776652 2222 4455666665554332221110000     0000 1


Q ss_pred             ccceEEeeecCcccc---cccccccccEEEcCCCcCc-ccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEEC
Q 039564          275 YYYSLTMSNKGQMLS---YEKIPYILTAVILSSNGFH-GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL  350 (485)
Q Consensus       275 ~~~~l~~~~~~~~~~---~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  350 (485)
                      ....+++..+.....   ....++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|+.|+|
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence            223333333333222   2234678999999999854 457888999999999999999999999999999999999999


Q ss_pred             CCCcCcccCcccccCCCCCCEEeccCCcccccCCCCC-CC-CCCCCCCCCCCCCCCCCCC
Q 039564          351 SNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEAN-QF-PTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       351 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~-~~l~~~~~~~n~~lc~~~~  408 (485)
                      ++|++++..|..|..+++|++|++++|++++..|... .+ ..+..+++.+|||.|+|.+
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            9999998888999999999999999999999888653 33 5688899999999999965

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=327.71  Aligned_cols=390  Identities=19%  Similarity=0.167  Sum_probs=275.1

Q ss_pred             CCCCCCCCC-hhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            1 RSCNLFEFP-NFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         1 ~~n~l~~~p-~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      ++|++..++ .+|.++++|++|+|++|.+++..|..|.  .+++|++|++++|.+++..+.  .+.....|++|++++|.
T Consensus        36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~  111 (570)
T 2z63_A           36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALG--AFSGLSSLQKLVAVETN  111 (570)
T ss_dssp             CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTSC
T ss_pred             cCCccCccChhHhhCCCCceEEECCCCcCCccCccccc--CchhCCEEeCcCCcCCccCHh--hhcCccccccccccccc
Confidence            467775554 4788899999999999998877777787  889999999999998876654  44444445999999998


Q ss_pred             ccccCCC---CCCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCc------------------
Q 039564           80 LQGPIPA---PPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFS------------------  137 (485)
Q Consensus        80 l~~~~~~---~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~------------------  137 (485)
                      +++..+.   .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..|..++.+.                  
T Consensus       112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~  191 (570)
T 2z63_A          112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (570)
T ss_dssp             CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence            8876542   28899999999998886 4688899999999999999988754444332211                  


Q ss_pred             ---ccccCCCCccEEEccCC----------------------------------------------------------cc
Q 039564          138 ---DTFMNGSNLGIIDMSHN----------------------------------------------------------LL  156 (485)
Q Consensus       138 ---~~~~~l~~L~~L~Ls~n----------------------------------------------------------~i  156 (485)
                         ..|.. .+|+.|++++|                                                          .+
T Consensus       192 ~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~  270 (570)
T 2z63_A          192 IQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY  270 (570)
T ss_dssp             ECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred             cCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence               01111 12333333322                                                          11


Q ss_pred             cccCCccccCCCCCcEEEccCCcccCCcChhhh--------------------CCCCCCEEEeeccccccccCCccccCC
Q 039564          157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLG--------------------TLSELDILVLQSNNFHGEIKEHKMECG  216 (485)
Q Consensus       157 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------------------~l~~L~~L~L~~n~l~~~~~~~~~~~~  216 (485)
                      .+..|..+..+++|++|++++|.+.. +|..+.                    .+++|++|++++|.+.+..+.    ..
T Consensus       271 ~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~----~~  345 (570)
T 2z63_A          271 LDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE----VD  345 (570)
T ss_dssp             ESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC----CB
T ss_pred             hhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc----cc
Confidence            12223333444555555555555432 333333                    345555555555554433332    45


Q ss_pred             CCCccEEEccCccCCccCC-hhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccc----cc
Q 039564          217 FPKLRIVDLSNNSFTGNLP-SKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLS----YE  291 (485)
Q Consensus       217 l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~  291 (485)
                      +++|+.|++++|.+.+... ...+..+++|+.++++++........ +      ... ..+..+.+..+.....    ..
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~------~~l-~~L~~L~l~~n~l~~~~~~~~~  417 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F------LGL-EQLEHLDFQHSNLKQMSEFSVF  417 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E------ETC-TTCCEEECTTSEEESCTTSCTT
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c------ccc-CCCCEEEccCCccccccchhhh
Confidence            7899999999999874321 23467888999998887643322110 1      111 2345566655544332    22


Q ss_pred             cccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceec-ccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCC
Q 039564          292 KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE-GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLE  370 (485)
Q Consensus       292 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  370 (485)
                      ..++.|+.|++++|.+.+..|..+..+++|++|++++|+++ +.+|..+..+++|+.|++++|++++..|..|..+++|+
T Consensus       418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  497 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  497 (570)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence            34678999999999999889999999999999999999997 57899999999999999999999998899999999999


Q ss_pred             EEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564          371 FFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       371 ~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      .|++++|++++..|.. ..++.+..+++.+||+.|+|+.
T Consensus       498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999877654 4678888999999999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.4e-38  Score=325.82  Aligned_cols=130  Identities=13%  Similarity=0.028  Sum_probs=88.7

Q ss_pred             CCCCCCCC-ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            1 RSCNLFEF-PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         1 ~~n~l~~~-p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      ++|.++.+ |..|+++++|++|+|++|.+.+..|..|.  .+++|++|++++|.+++..+. . +..+..|++|++++|.
T Consensus        41 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~-~-~~~l~~L~~L~L~~n~  116 (606)
T 3t6q_A           41 SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAET-A-LSGPKALKHLFFIQTG  116 (606)
T ss_dssp             TTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCSEECTT-T-TSSCTTCCEEECTTSC
T ss_pred             cCCccCcCChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCCCCcccccChh-h-hcccccccEeeccccC
Confidence            35666444 55777888888888888887777777777  778888888888887776554 3 3333444888888887


Q ss_pred             ccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccc
Q 039564           80 LQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLG  134 (485)
Q Consensus        80 l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~  134 (485)
                      +++..+..   +++|++|++++|.+.+.....+..+++|++|++++|.+++..|..++
T Consensus       117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  174 (606)
T 3t6q_A          117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS  174 (606)
T ss_dssp             CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred             cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh
Confidence            77643322   77788888888888764434444578888888888877755454333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-38  Score=326.68  Aligned_cols=385  Identities=19%  Similarity=0.215  Sum_probs=274.6

Q ss_pred             CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564            2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ   81 (485)
Q Consensus         2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~   81 (485)
                      +++++++|+.+.  ++|++|++++|.+++..|..|.  .+++|++|++++|.+++..+. .+. ....|++|++++|.++
T Consensus        14 ~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~-~~~-~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           14 SRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGD-AFY-SLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             TSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTT-TTT-TCTTCCEEECTTSCCC
T ss_pred             CCccccccccCC--CCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChh-hcc-ccccCCEEECCCCccC
Confidence            567889998765  8999999999999988888888  899999999999999987654 344 4445599999999999


Q ss_pred             ccCCC---CCCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564           82 GPIPA---PPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ  157 (485)
Q Consensus        82 ~~~~~---~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~  157 (485)
                      +..+.   .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+.+|.      ..|..+++|++|++++|.++
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR------IDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------TTTTTCCEEEEEEEEETTCC
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH------hhhhcccccCeeeccCCccc
Confidence            87764   28999999999999986 3577899999999999999985556653      34556789999999999999


Q ss_pred             ccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeecccccccc--CCccc----------------------
Q 039564          158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEI--KEHKM----------------------  213 (485)
Q Consensus       158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~----------------------  213 (485)
                      +..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..  +....                      
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN  241 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred             ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence            888888888888888888877764433333456777777777777766421  00000                      


Q ss_pred             ----------------------------------------------------------------cCCCCCccEEEccCcc
Q 039564          214 ----------------------------------------------------------------ECGFPKLRIVDLSNNS  229 (485)
Q Consensus       214 ----------------------------------------------------------------~~~l~~L~~L~l~~n~  229 (485)
                                                                                      ....++|+.|++++|.
T Consensus       242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~  321 (549)
T 2z81_A          242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK  321 (549)
T ss_dssp             HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred             HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence                                                                            0011345666666666


Q ss_pred             CCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccc-----cccccccccEEEcCC
Q 039564          230 FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLS-----YEKIPYILTAVILSS  304 (485)
Q Consensus       230 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~L~~L~Ls~  304 (485)
                      +. .+|..++..+++|+.++++++..........   ...+.+ ..+..+++..+.....     ....++.|+.|++++
T Consensus       322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~  396 (549)
T 2z81_A          322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS---ACKGAW-PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR  396 (549)
T ss_dssp             CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH---TCTTSS-TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred             cc-cCCHHHHhcCccccEEEccCCccccccccch---hhhhcc-ccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence            65 6676666677888888777654332210000   001111 2345566655554321     233466777777777


Q ss_pred             CcCcccCchhhccCCCCCEEeCcCceecccCCcc------------------ccCCCCCCEEECCCCcCcccCcccccCC
Q 039564          305 NGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSC------------------FGDLTKLESLDLSNNWFSGQIPQQLTGL  366 (485)
Q Consensus       305 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  366 (485)
                      |+++ .+|..+..+++|++|++++|++++ +|..                  ...+++|+.|++++|+++ .+|+ ...+
T Consensus       397 N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l  472 (549)
T 2z81_A          397 NTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLF  472 (549)
T ss_dssp             CCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred             CCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccC
Confidence            7777 566666666777777777766652 2221                  136788999999999998 6676 4678


Q ss_pred             CCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCC
Q 039564          367 TFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKP  407 (485)
Q Consensus       367 ~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~  407 (485)
                      ++|+.|++++|++++.+|.. ..++.+..+++++||+.|+|+
T Consensus       473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            99999999999999877753 467788899999999999987

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-37  Score=320.51  Aligned_cols=359  Identities=23%  Similarity=0.242  Sum_probs=261.6

Q ss_pred             CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      ++|+++.+|..+.  ++|++|++++|.+.+..|..|.  .+++|++|++++|.++++.+.  .+.....|++|++++|.+
T Consensus        39 s~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l  112 (562)
T 3a79_B           39 SNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFH--VFLFNQDLEYLDVSHNRL  112 (562)
T ss_dssp             TTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTT--TTTTCTTCCEEECTTSCC
T ss_pred             CCCCCccCCCCCC--CCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHH--HhCCCCCCCEEECCCCcC
Confidence            4678888998765  8999999999999977777888  899999999999999987664  444445559999999999


Q ss_pred             cccCCCCCCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcc--c
Q 039564           81 QGPIPAPPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL--Q  157 (485)
Q Consensus        81 ~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i--~  157 (485)
                      +......+++|++|++++|.+++ ..|..|+++++|++|++++|.+++.   .++.    +..+ +|++|++++|.+  +
T Consensus       113 ~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~----l~~L-~L~~L~L~~n~l~~~  184 (562)
T 3a79_B          113 QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP----VAHL-HLSCILLDLVSYHIK  184 (562)
T ss_dssp             CEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG----GTTS-CEEEEEEEESSCCCC
T ss_pred             CccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhh----hhhc-eeeEEEeeccccccc
Confidence            86655568999999999999986 3468999999999999999988742   2222    1122 338888888777  5


Q ss_pred             ccCCccccCCC---------------------------------------------------------------------
Q 039564          158 GRIPKSLANCA---------------------------------------------------------------------  168 (485)
Q Consensus       158 ~~~~~~~~~l~---------------------------------------------------------------------  168 (485)
                      +..|..+..+.                                                                     
T Consensus       185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~  264 (562)
T 3a79_B          185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK  264 (562)
T ss_dssp             SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred             ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence            55555444322                                                                     


Q ss_pred             ------------CCcEEEccCCcccCCcChhh-----hCC--------------------------CCCCEEEeeccccc
Q 039564          169 ------------VLEIIDLGNNQIIDTFPAWL-----GTL--------------------------SELDILVLQSNNFH  205 (485)
Q Consensus       169 ------------~L~~L~Ls~n~l~~~~~~~~-----~~l--------------------------~~L~~L~L~~n~l~  205 (485)
                                  +|++|++++|.+++.+|..+     ..+                          .+|++|++++|.+.
T Consensus       265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~  344 (562)
T 3a79_B          265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI  344 (562)
T ss_dssp             HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred             HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence                        44455555555544444332     111                          23444444444443


Q ss_pred             cccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecC
Q 039564          206 GEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKG  285 (485)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  285 (485)
                      ....    ...+++|++|++++|.+.+.+|.. +..+++|+.++++++......           .+             
T Consensus       345 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-----------~~-------------  395 (562)
T 3a79_B          345 HMVC----PPSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFF-----------KV-------------  395 (562)
T ss_dssp             CCCC----CSSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTT-----------HH-------------
T ss_pred             cccC----ccCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcc-----------cc-------------
Confidence            1110    146789999999999999666644 678888888887754322100           00             


Q ss_pred             cccccccccccccEEEcCCCcCcccCch-hhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCccccc
Q 039564          286 QMLSYEKIPYILTAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLT  364 (485)
Q Consensus       286 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  364 (485)
                        ......++.|+.|++++|.+.+.+|. .+..+++|++|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+.
T Consensus       396 --~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~  470 (562)
T 3a79_B          396 --ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT  470 (562)
T ss_dssp             --HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT
T ss_pred             --hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc
Confidence              00112356799999999999975554 588899999999999999887776654  78999999999999 6777777


Q ss_pred             CCCCCCEEeccCCcccccCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q 039564          365 GLTFLEFFNVSHNNLTGPIPEA--NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       365 ~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      .+++|+.|++++|++++ +|..  ..++.+..+++.+||+.|+|+.
T Consensus       471 ~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          471 HLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            99999999999999995 5543  4677888899999999999865

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=321.21  Aligned_cols=357  Identities=19%  Similarity=0.223  Sum_probs=240.1

Q ss_pred             CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      ++|+++++|..+.  ++|++|++++|.+.+..|..|.  .+++|++|++++|.++++.+.  .+.....|++|++++|.+
T Consensus         8 s~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            8 SKNGLIHVPKDLS--QKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDIS--VFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             TTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGG--GGTTCTTCCEEECCSSCC
T ss_pred             CCCCccccccccc--ccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChH--HhhcccCCCEEecCCCce
Confidence            4677777777665  7888888888887766556677  778888888888887776553  333334448888888877


Q ss_pred             cccCCCCCCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCc--cEEEccCCcc-
Q 039564           81 QGPIPAPPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNL--GIIDMSHNLL-  156 (485)
Q Consensus        81 ~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L--~~L~Ls~n~i-  156 (485)
                      +...+..+++|++|++++|.+++ .+|..|+++++|++|++++|.+++.   .+       ..+++|  ++|++++|.+ 
T Consensus        82 ~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~-------~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           82 VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SV-------LPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             CEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GG-------GGGTTSCEEEEEEEECTTT
T ss_pred             eecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hc-------cccccceeeEEEeeccccc
Confidence            75444457778888888888775 3667777777887777777776531   11       111222  3444443333 


Q ss_pred             -cccCCccccCC--------------------------------------------------------------------
Q 039564          157 -QGRIPKSLANC--------------------------------------------------------------------  167 (485)
Q Consensus       157 -~~~~~~~~~~l--------------------------------------------------------------------  167 (485)
                       .+..|..+..+                                                                    
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence             22222222221                                                                    


Q ss_pred             ---------------CCCcEEEccCCcccCCcChhh-----hCCC--------------------------CCCEEEeec
Q 039564          168 ---------------AVLEIIDLGNNQIIDTFPAWL-----GTLS--------------------------ELDILVLQS  201 (485)
Q Consensus       168 ---------------~~L~~L~Ls~n~l~~~~~~~~-----~~l~--------------------------~L~~L~L~~  201 (485)
                                     ++|++|++++|.+.+.+|..+     ..++                          +|+.|++++
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~  311 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG  311 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCC
Confidence                           134444444444444444333     3333                          344444444


Q ss_pred             cccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEe
Q 039564          202 NNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTM  281 (485)
Q Consensus       202 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (485)
                      |.+....    ....+++|++|++++|.+.+.+|.. +..+++|+.++++++......           .+         
T Consensus       312 n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~-----------~~---------  366 (520)
T 2z7x_B          312 TRMVHML----CPSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELS-----------KI---------  366 (520)
T ss_dssp             SCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHH-----------HH---------
T ss_pred             Ccccccc----chhhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccc-----------cc---------
Confidence            4443211    0146789999999999999766654 678888888887754322100           00         


Q ss_pred             eecCcccccccccccccEEEcCCCcCcccCchh-hccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCc
Q 039564          282 SNKGQMLSYEKIPYILTAVILSSNGFHGEIPTS-IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP  360 (485)
Q Consensus       282 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  360 (485)
                            ......++.|+.|++++|.+.+.+|.. +..+++|++|++++|++++..|..+.  ++|+.|++++|+++ .+|
T Consensus       367 ------~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip  437 (520)
T 2z7x_B          367 ------AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP  437 (520)
T ss_dssp             ------HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCC
T ss_pred             ------hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccc
Confidence                  001123567999999999999756654 88899999999999999888877664  79999999999999 788


Q ss_pred             ccccCCCCCCEEeccCCcccccCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q 039564          361 QQLTGLTFLEFFNVSHNNLTGPIPEA--NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       361 ~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      ..+..+++|+.|++++|++++ +|..  ..++.+..+++.+||+.|+|+.
T Consensus       438 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          438 KQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             GGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            878899999999999999995 5543  4567788899999999999865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-38  Score=336.01  Aligned_cols=362  Identities=15%  Similarity=0.173  Sum_probs=291.7

Q ss_pred             CCCCCCCChhhhCCCCCCEEECCCCcCCC-----------------CCCcccccCCCCCCcEEEccCCcCcCcCCCCCCC
Q 039564            2 SCNLFEFPNFLKQQKHLKALDLSSNKLHG-----------------NIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVF   64 (485)
Q Consensus         2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~-----------------~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   64 (485)
                      +|++..+|+.|+++++|++|+|++|.+++                 .+|..++...+++|++|+|++|.+.+..|. .+.
T Consensus       434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~  512 (876)
T 4ecn_A          434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY  512 (876)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred             cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence            46673499999999999999999999998                 388875311689999999999999988875 455


Q ss_pred             CCCCCccEEEcCCCc-ccc-cCCC----------CCCCCcEEEccCCcccccCCh--hhcCCCCCCEEEcccCcccccCC
Q 039564           65 PWSSGEFTLDLSSNF-LQG-PIPA----------PPTKTRHYLVSKNNLTGEIPS--WICNLSSLYILDLSDNNLSGELP  130 (485)
Q Consensus        65 ~~~~lL~~L~l~~n~-l~~-~~~~----------~~~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p  130 (485)
                      ++..+ ++|++++|+ +++ .+|.          .+++|++|++++|.++ .+|.  .|+++++|+.|++++|.++ .+|
T Consensus       513 ~L~~L-~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          513 DLPEL-QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             GCSSC-CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             CCCCC-CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            55555 999999998 887 5543          2569999999999999 8888  9999999999999999998 887


Q ss_pred             CccccCcccccCCCCccEEEccCCcccccCCccccCCCC-CcEEEccCCcccCCcChhhhCCCC--CCEEEeeccccccc
Q 039564          131 RCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV-LEIIDLGNNQIIDTFPAWLGTLSE--LDILVLQSNNFHGE  207 (485)
Q Consensus       131 ~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~  207 (485)
                       .++       .+++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+..++.  |+.|++++|.+.+.
T Consensus       590 -~~~-------~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          590 -AFG-------TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             -CCC-------TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             -hhc-------CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence             444       4589999999999999 89999999999 999999999997 67777776654  99999999999876


Q ss_pred             cCCc---cccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccc--ccCcCcccceEEee
Q 039564          208 IKEH---KMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDF--YGYFPHYYYSLTMS  282 (485)
Q Consensus       208 ~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~  282 (485)
                      +|..   .....+++|+.|++++|.+. .+|..++..+++|+.++++++... .+.........  ...+ ..+..+++.
T Consensus       660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl-~~L~~L~Ls  736 (876)
T 4ecn_A          660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT-YLLTTIDLR  736 (876)
T ss_dssp             SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG-GGCCEEECC
T ss_pred             cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc-CCccEEECC
Confidence            6532   21124568999999999999 899888889999999998876433 21111110000  0000 156677777


Q ss_pred             ecCcccccc----cccccccEEEcCCCcCcccCchhhccCCCCCEEeCcC------ceecccCCccccCCCCCCEEECCC
Q 039564          283 NKGQMLSYE----KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLAN------NNLEGHIPSCFGDLTKLESLDLSN  352 (485)
Q Consensus       283 ~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~  352 (485)
                      .+.......    ..++.|+.|+|++|.+++ +|..+..+++|+.|+|++      |++.+.+|..+..+++|+.|+|++
T Consensus       737 ~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~  815 (876)
T 4ecn_A          737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS  815 (876)
T ss_dssp             SSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             CCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence            776553222    246889999999999996 788999999999999976      788889999999999999999999


Q ss_pred             CcCcccCcccccCCCCCCEEeccCCcccccCC
Q 039564          353 NWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP  384 (485)
Q Consensus       353 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  384 (485)
                      |++ +.+|..+.  ++|+.|++++|++....+
T Consensus       816 N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          816 NDI-RKVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             SCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             CCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence            999 58888765  699999999999876443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.7e-37  Score=309.89  Aligned_cols=348  Identities=18%  Similarity=0.148  Sum_probs=276.4

Q ss_pred             CCCCCCCC-ChhhhCCCCCCEEECCCCcCCCCC-CcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCC
Q 039564            1 RSCNLFEF-PNFLKQQKHLKALDLSSNKLHGNI-PKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSN   78 (485)
Q Consensus         1 ~~n~l~~~-p~~~~~l~~L~~L~Ls~n~~~~~~-p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n   78 (485)
                      ++|.+..+ |..|+++++|++|++++|.+.+.+ +..|.  .+++|++|++++|.+++..+. .+.++ ..|++|++++|
T Consensus        38 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~~~-~~~~l-~~L~~L~L~~n  113 (455)
T 3v47_A           38 SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR--GLSSLIILKLDYNQFLQLETG-AFNGL-ANLEVLTLTQC  113 (455)
T ss_dssp             CSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT--TCTTCCEEECTTCTTCEECTT-TTTTC-TTCCEEECTTS
T ss_pred             cCCccCcCChhHhccCccccEEECcCCcccceECccccc--ccccCCEEeCCCCccCccChh-hccCc-ccCCEEeCCCC
Confidence            47888444 789999999999999999997655 45677  899999999999999987665 34444 45599999999


Q ss_pred             cccccCC-----CCCCCCcEEEccCCcccccCChh-hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEcc
Q 039564           79 FLQGPIP-----APPTKTRHYLVSKNNLTGEIPSW-ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMS  152 (485)
Q Consensus        79 ~l~~~~~-----~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls  152 (485)
                      .+++..+     ..+++|++|++++|.+.+..|.. |.++++|++|++++|.+++..|..++.+.     ..+|+.|+++
T Consensus       114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-----~~~L~~L~l~  188 (455)
T 3v47_A          114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-----GKHFTLLRLS  188 (455)
T ss_dssp             CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT-----TCEEEEEECT
T ss_pred             CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc-----cccccccccc
Confidence            9987432     23899999999999999887876 89999999999999999988787765542     3689999999


Q ss_pred             CCcccccCCcc--------ccCCCCCcEEEccCCcccCCcChhhhCC---CCCCEEEeeccccccccC----------Cc
Q 039564          153 HNLLQGRIPKS--------LANCAVLEIIDLGNNQIIDTFPAWLGTL---SELDILVLQSNNFHGEIK----------EH  211 (485)
Q Consensus       153 ~n~i~~~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~----------~~  211 (485)
                      +|.+.+..+..        +..+++|++|++++|.+.+..|..+...   ++|+.|++++|...+...          ..
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence            99998655443        3366889999999999988777776654   788888888886543211          11


Q ss_pred             cccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc
Q 039564          212 KMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE  291 (485)
Q Consensus       212 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  291 (485)
                      +.....++|+.|++++|.+.+..| ..+..+++|+.++++++........                            ..
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~----------------------------~~  319 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDN----------------------------AF  319 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTT----------------------------TT
T ss_pred             cccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChh----------------------------Hh
Confidence            111233678888888888885444 4477788888887765442221100                            01


Q ss_pred             cccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCE
Q 039564          292 KIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEF  371 (485)
Q Consensus       292 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  371 (485)
                      ..++.|+.|++++|.+.+..|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.
T Consensus       320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence            12566999999999999888999999999999999999999888999999999999999999999777778899999999


Q ss_pred             EeccCCcccccCCCC
Q 039564          372 FNVSHNNLTGPIPEA  386 (485)
Q Consensus       372 L~l~~N~l~~~~p~~  386 (485)
                      |++++|++++.+|..
T Consensus       400 L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          400 IWLHTNPWDCSCPRI  414 (455)
T ss_dssp             EECCSSCBCCCTTTT
T ss_pred             EEccCCCcccCCCcc
Confidence            999999999988753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.2e-37  Score=329.14  Aligned_cols=394  Identities=18%  Similarity=0.132  Sum_probs=275.8

Q ss_pred             CCCCCC-CCChhhhCCCCCCEEECCCCcCCCCC-CcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCC
Q 039564            1 RSCNLF-EFPNFLKQQKHLKALDLSSNKLHGNI-PKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSN   78 (485)
Q Consensus         1 ~~n~l~-~~p~~~~~l~~L~~L~Ls~n~~~~~~-p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n   78 (485)
                      ++|.+. ..|..|+++++|++|+|++|.+.+.+ |.+|.  .+++|++|+|++|.+++..|.  .+..+..|++|++++|
T Consensus        32 s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           32 SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPD--AFQGLFHLFELRLYFC  107 (844)
T ss_dssp             ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTT--SSCSCSSCCCEECTTC
T ss_pred             CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHh--HccCCcccCEeeCcCC
Confidence            357773 34678888899999999988655555 67787  889999999999999887665  4444445599999999


Q ss_pred             cccccCCC-----CCCCCcEEEccCCcccccCC-hhhcCCCCCCEEEcccCcccccCCCccccCc---------------
Q 039564           79 FLQGPIPA-----PPTKTRHYLVSKNNLTGEIP-SWICNLSSLYILDLSDNNLSGELPRCLGNFS---------------  137 (485)
Q Consensus        79 ~l~~~~~~-----~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~---------------  137 (485)
                      .+++..+.     .+++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..|..++.+.               
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence            99875443     28899999999999987654 5789999999999999998877776655431               


Q ss_pred             ----ccccCCC------CccEEEccCCcccccCCccccC--------------------------------------CCC
Q 039564          138 ----DTFMNGS------NLGIIDMSHNLLQGRIPKSLAN--------------------------------------CAV  169 (485)
Q Consensus       138 ----~~~~~l~------~L~~L~Ls~n~i~~~~~~~~~~--------------------------------------l~~  169 (485)
                          ..+..+.      .|++|++++|.+++..+..+..                                      .++
T Consensus       188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~  267 (844)
T 3j0a_A          188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS  267 (844)
T ss_dssp             CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred             cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence                1111122      3888999888776555443321                                      267


Q ss_pred             CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564          170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN  249 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~  249 (485)
                      |++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+. .++...+..+++|+.++
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEE
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEE
Confidence            9999999999988888889999999999999999987777777  78899999999999998 44445588899999998


Q ss_pred             ccchhhhhcccccccc----------cccccCcC--cccceEEeeecCccccc------------------------ccc
Q 039564          250 ASQLRYMRNFLSSYFS----------FDFYGYFP--HYYYSLTMSNKGQMLSY------------------------EKI  293 (485)
Q Consensus       250 ~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~l~~~~~~~~~~~------------------------~~~  293 (485)
                      ++++.........+..          .+.+..++  ..+..+.+..+......                        ...
T Consensus       345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~  424 (844)
T 3j0a_A          345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR  424 (844)
T ss_dssp             CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred             CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence            8865432211111110          01111111  12344444443332110                        012


Q ss_pred             cccccEEEcCCCcCcccCch-hhccCCCCCEEeCcCceec-----ccCCccccCCCCCCEEECCCCcCcccCcccccCCC
Q 039564          294 PYILTAVILSSNGFHGEIPT-SIANLKGLQVLSLANNNLE-----GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT  367 (485)
Q Consensus       294 ~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  367 (485)
                      ++.|+.|++++|.+++..+. .+..+++|+.|+|++|.++     +..+..|..+++|+.|+|++|.+++..|..|..++
T Consensus       425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  504 (844)
T 3j0a_A          425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT  504 (844)
T ss_dssp             CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred             CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence            44566666666666543322 2344566777777777665     33445688899999999999999988888999999


Q ss_pred             CCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCC
Q 039564          368 FLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSG  402 (485)
Q Consensus       368 ~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  402 (485)
                      +|+.|++++|++++..|.... +.+..+++++|..
T Consensus       505 ~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          505 ALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL  538 (844)
T ss_dssp             SCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred             hhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence            999999999999976655433 5666666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.6e-37  Score=321.31  Aligned_cols=378  Identities=19%  Similarity=0.136  Sum_probs=283.6

Q ss_pred             CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      ++++++++|..+.  +++++|+|++|.+++..+..|.  .+++|++|++++|.++++.+.  .+.....|++|++++|.+
T Consensus        19 ~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           19 MDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             TTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCC
T ss_pred             cCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHH--HhhchhhcCEeECCCCcc
Confidence            3567889998776  8999999999999988887898  899999999999999987765  444445559999999999


Q ss_pred             cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccc-cCCCccccCcccccCCCCccEEEccCCcc
Q 039564           81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG-ELPRCLGNFSDTFMNGSNLGIIDMSHNLL  156 (485)
Q Consensus        81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i  156 (485)
                      ++..|..   +++|++|++++|.+.+..+..|+++++|++|++++|.+++ .+|..+++       +++|++|++++|.+
T Consensus        93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-------l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-------LTNLVHVDLSYNYI  165 (606)
T ss_dssp             CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT-------CTTCCEEECCSSCC
T ss_pred             cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh-------cCCCCEEEccCCcc
Confidence            9887765   8999999999999997777889999999999999999985 56765554       57888888888888


Q ss_pred             cccCCccccCCC---------------------------CCcEEEccCCccc----------------------------
Q 039564          157 QGRIPKSLANCA---------------------------VLEIIDLGNNQII----------------------------  181 (485)
Q Consensus       157 ~~~~~~~~~~l~---------------------------~L~~L~Ls~n~l~----------------------------  181 (485)
                      ++..+..|..++                           +|++|++++|.+.                            
T Consensus       166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             eecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            766555443322                           2333333333221                            


Q ss_pred             ----------------------------------------------------CCcChhhhCCCCCCEEEeeccccccccC
Q 039564          182 ----------------------------------------------------DTFPAWLGTLSELDILVLQSNNFHGEIK  209 (485)
Q Consensus       182 ----------------------------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~  209 (485)
                                                                          ..+| .+..+++|++|++++|.+ +.+|
T Consensus       246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp  323 (606)
T 3vq2_A          246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP  323 (606)
T ss_dssp             CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred             cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc
Confidence                                                                0011 233334455555555554 2333


Q ss_pred             Cc------------------cccCCCCCccEEEccCccCCcc--CChhhhcccccceeccccchhhhhcccccccccccc
Q 039564          210 EH------------------KMECGFPKLRIVDLSNNSFTGN--LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFY  269 (485)
Q Consensus       210 ~~------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  269 (485)
                      ..                  .....+++|++|++++|.+++.  ++ ..+..+++|+.++++.+..... ...      +
T Consensus       324 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~-~~~------~  395 (606)
T 3vq2_A          324 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS-YSDLGTNSLRHLDLSFNGAIIM-SAN------F  395 (606)
T ss_dssp             CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECC-HHHHCCSCCCEEECCSCSEEEE-CCC------C
T ss_pred             cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchh-hhhccCCcccEeECCCCccccc-hhh------c
Confidence            10                  0114678899999999998754  24 3478889999999887653221 111      1


Q ss_pred             cCcCcccceEEeeecCccccc----ccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecc-cCCccccCCCC
Q 039564          270 GYFPHYYYSLTMSNKGQMLSY----EKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG-HIPSCFGDLTK  344 (485)
Q Consensus       270 ~~~~~~~~~l~~~~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~  344 (485)
                      ... ..+..+.+..+......    ...++.|+.|++++|.+.+..|..+..+++|++|++++|++++ .+|..++.+++
T Consensus       396 ~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          396 MGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             TTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cCC-CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            111 24566666666544332    2347889999999999998899999999999999999999997 47889999999


Q ss_pred             CCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCC
Q 039564          345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSG  402 (485)
Q Consensus       345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~  402 (485)
                      |+.|++++|++++..|..|..+++|+.|++++|++++..|.. ..++.+..+++.+|..
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            999999999999999999999999999999999999877754 4567777788877753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.9e-36  Score=316.55  Aligned_cols=396  Identities=21%  Similarity=0.227  Sum_probs=199.6

Q ss_pred             CCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            2 SCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         2 ~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      +|.+..+|. .|+++++|++|+|++|.+.+..|..+.  .+++|++|++++|.++++.+.  .+..+..|++|++++|.+
T Consensus        34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDK--TFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCC
T ss_pred             CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCccCccChh--hhccCCCCCEEECCCCcc
Confidence            455644443 566666666666666666655565565  566666666666666654332  233333336666666666


Q ss_pred             cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccc--------------------------cCCC
Q 039564           81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG--------------------------ELPR  131 (485)
Q Consensus        81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--------------------------~~p~  131 (485)
                      ++..+..   +++|++|++++|.+++..|..|+++++|++|++++|.+++                          ..|.
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence            5544332   5556666666666655555555555555555555555543                          3332


Q ss_pred             ccccCccc----c----------------cCCCCccEEEccCCcccccCCccccCCCC--CcEEEccCCcccCCcChhhh
Q 039564          132 CLGNFSDT----F----------------MNGSNLGIIDMSHNLLQGRIPKSLANCAV--LEIIDLGNNQIIDTFPAWLG  189 (485)
Q Consensus       132 ~l~~l~~~----~----------------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~  189 (485)
                      .++.+...    +                ...++|+.|++++|.+++..|..|..++.  |++|++++|.+.+..+.+|+
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~  269 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA  269 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence            22211100    0                00123344444444444444444443322  55555555555444444455


Q ss_pred             CCCCCCEEEeeccccccccCCcc-------------------------------ccCCCCCccEEEccCccCCccCChhh
Q 039564          190 TLSELDILVLQSNNFHGEIKEHK-------------------------------MECGFPKLRIVDLSNNSFTGNLPSKY  238 (485)
Q Consensus       190 ~l~~L~~L~L~~n~l~~~~~~~~-------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~  238 (485)
                      .+++|++|++++|.+.+..+..+                               .+..+++|++|++++|.+.+ ++...
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~  348 (680)
T 1ziw_A          270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNM  348 (680)
T ss_dssp             TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC-CCTTT
T ss_pred             CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC-CChhH
Confidence            55555555555554443333222                               11345666666666666663 34444


Q ss_pred             hcccccceeccccchhhh-hccc-cccc------------ccccccC-----c--CcccceEEeeecCccccc----ccc
Q 039564          239 FQCWNAMKFVNASQLRYM-RNFL-SSYF------------SFDFYGY-----F--PHYYYSLTMSNKGQMLSY----EKI  293 (485)
Q Consensus       239 ~~~l~~L~~l~~~~~~~~-~~~~-~~~~------------~~~~~~~-----~--~~~~~~l~~~~~~~~~~~----~~~  293 (485)
                      +..+++|+.++++++..- ..+. ..+.            +.+.+..     +  ...+..+++..+......    ...
T Consensus       349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  428 (680)
T 1ziw_A          349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG  428 (680)
T ss_dssp             TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred             hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence            666666666666543210 0000 0000            0000000     0  012333444443332211    122


Q ss_pred             cccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceec--ccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCE
Q 039564          294 PYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE--GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEF  371 (485)
Q Consensus       294 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  371 (485)
                      ++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.  +.+|..|..+++|+.|++++|++++..+..|..+++|+.
T Consensus       429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  508 (680)
T 1ziw_A          429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI  508 (680)
T ss_dssp             CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence            344555555555555444555555555555555555554  355666777777777777777777666666777777777


Q ss_pred             EeccCCcccccCCC---------CCCCCCCCCCCCCCCCC
Q 039564          372 FNVSHNNLTGPIPE---------ANQFPTFDSSSFDGNSG  402 (485)
Q Consensus       372 L~l~~N~l~~~~p~---------~~~~~~l~~~~~~~n~~  402 (485)
                      |++++|++++..+.         -..++.+..+++.+|..
T Consensus       509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l  548 (680)
T 1ziw_A          509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF  548 (680)
T ss_dssp             EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred             EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence            77777777653211         12345556666666643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=307.27  Aligned_cols=322  Identities=20%  Similarity=0.219  Sum_probs=274.7

Q ss_pred             CCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEE
Q 039564           18 LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHY   94 (485)
Q Consensus        18 L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L   94 (485)
                      -+.++.+++.++ .+|..+.    +++++|+|++|.++++.+.  .+.....|++|++++|.+++..|..   +++|++|
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~----~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L   85 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP----TETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL   85 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC----TTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCEEEeCCCCcC-cCCCCCC----CCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEeChhhhhCCccCCEE
Confidence            467899999998 7887654    5899999999999987664  3444455599999999999887654   7899999


Q ss_pred             EccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEE
Q 039564           95 LVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIID  174 (485)
Q Consensus        95 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  174 (485)
                      ++++|.++...+..|.++++|++|++++|.+++..|..       |..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM-------FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-------TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             ECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH-------ccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            99999999766677899999999999999998666644       45568999999999999988888999999999999


Q ss_pred             ccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchh
Q 039564          175 LGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLR  254 (485)
Q Consensus       175 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~  254 (485)
                      +++|.+++..+..|..+++|+.|++++|.+.+..+..+  ..+++|+.|++++|...+.++...+.              
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~--------------  222 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLY--------------  222 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTCCEECTTTTT--------------
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccccccCccccc--------------
Confidence            99999988888889999999999999999987666666  78899999999998877666644221              


Q ss_pred             hhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceeccc
Q 039564          255 YMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGH  334 (485)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  334 (485)
                                                             ...|+.|++++|.+++..+..+..+++|++|+|++|++++.
T Consensus       223 ---------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  263 (477)
T 2id5_A          223 ---------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI  263 (477)
T ss_dssp             ---------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred             ---------------------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence                                                   12499999999999965557899999999999999999988


Q ss_pred             CCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564          335 IPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       335 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      .+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+.. ..++.+..+.+.+||+.|+|+.
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            8889999999999999999999999999999999999999999999765543 3567788899999999999865

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4e-36  Score=308.61  Aligned_cols=364  Identities=19%  Similarity=0.178  Sum_probs=268.9

Q ss_pred             CCCCCCCC-ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            1 RSCNLFEF-PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         1 ~~n~l~~~-p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      ++|.++.+ |..|+++++|++|++++|++++..|..|.  .+++|++|++++|.+++..+.  .+..+..|++|++++|.
T Consensus        34 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           34 SFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSS--WFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             CSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCSCCHH--HHTTCTTCCEEECTTCC
T ss_pred             cCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc--ccccCCEEECCCCccCccCHH--HhccCCCCcEEECCCCc
Confidence            46888544 67899999999999999999988888898  899999999999999987653  34444555999999999


Q ss_pred             cccc-CCCC---CCCCcEEEccCCcccccCC-hhhcCCCCCCEEEcccCcccccCCCccccCc-----------------
Q 039564           80 LQGP-IPAP---PTKTRHYLVSKNNLTGEIP-SWICNLSSLYILDLSDNNLSGELPRCLGNFS-----------------  137 (485)
Q Consensus        80 l~~~-~~~~---~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-----------------  137 (485)
                      +++. .+..   +++|++|++++|.+.+.+| ..|.++++|++|++++|.+++..|..++.+.                 
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  189 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE  189 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch
Confidence            9863 2322   8999999999998544554 6899999999999999999988887776553                 


Q ss_pred             ccccCCCCccEEEccCCcccccC--Ccc-ccC------------------------------------------------
Q 039564          138 DTFMNGSNLGIIDMSHNLLQGRI--PKS-LAN------------------------------------------------  166 (485)
Q Consensus       138 ~~~~~l~~L~~L~Ls~n~i~~~~--~~~-~~~------------------------------------------------  166 (485)
                      ..+..+++|++|++++|.+++..  +.. ...                                                
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~  269 (549)
T 2z81_A          190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF  269 (549)
T ss_dssp             HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC
T ss_pred             hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc
Confidence            01234688888898888887531  100 001                                                


Q ss_pred             ---------------------------------------CCCCcEEEccCCcccCCcChhh-hCCCCCCEEEeecccccc
Q 039564          167 ---------------------------------------CAVLEIIDLGNNQIIDTFPAWL-GTLSELDILVLQSNNFHG  206 (485)
Q Consensus       167 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~  206 (485)
                                                             .++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+
T Consensus       270 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~  348 (549)
T 2z81_A          270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE  348 (549)
T ss_dssp             CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH
T ss_pred             cccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc
Confidence                                                   124555555555553 234333 567888888888888876


Q ss_pred             ccCCcc-ccCCCCCccEEEccCccCCccCCh--hhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeee
Q 039564          207 EIKEHK-MECGFPKLRIVDLSNNSFTGNLPS--KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSN  283 (485)
Q Consensus       207 ~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (485)
                      .+|... ....+++|++|++++|.++ .++.  ..+..+++|+.++++++... .+...      + .....+..+++..
T Consensus       349 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~------~-~~~~~L~~L~Ls~  419 (549)
T 2z81_A          349 EYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDS------C-QWPEKMRFLNLSS  419 (549)
T ss_dssp             HHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC------C-CCCTTCCEEECTT
T ss_pred             ccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChh------h-cccccccEEECCC
Confidence            553220 1156778888888888887 3332  44677788888877765322 11110      0 1123566777777


Q ss_pred             cCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccc
Q 039564          284 KGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQL  363 (485)
Q Consensus       284 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  363 (485)
                      +.........++.|+.|++++|++++..    ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|..+
T Consensus       420 N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~  493 (549)
T 2z81_A          420 TGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF  493 (549)
T ss_dssp             SCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred             CCcccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence            7665444445678999999999998643    57899999999999999 6776 4679999999999999999888899


Q ss_pred             cCCCCCCEEeccCCcccccCC
Q 039564          364 TGLTFLEFFNVSHNNLTGPIP  384 (485)
Q Consensus       364 ~~l~~L~~L~l~~N~l~~~~p  384 (485)
                      ..+++|+.|++++|++++.+|
T Consensus       494 ~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          494 DRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGCTTCCEEECCSSCBCCCHH
T ss_pred             hcCcccCEEEecCCCccCCCc
Confidence            999999999999999998766

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=304.99  Aligned_cols=370  Identities=18%  Similarity=0.212  Sum_probs=269.6

Q ss_pred             CCCCCCCC-ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            1 RSCNLFEF-PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         1 ~~n~l~~~-p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      ++|.+..+ |..|+++++|++|+|++|.+++..|..|.  .+++|++|++++|.++++.+. .+..+ ..|++|++++|.
T Consensus        60 s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~-~~~~l-~~L~~L~L~~n~  135 (570)
T 2z63_A           60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENF-PIGHL-KTLKELNVAHNL  135 (570)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTSCCCCSTTC-SCTTC-TTCCEEECCSSC
T ss_pred             CCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc--CccccccccccccccccCCCc-ccccc-ccccEEecCCCc
Confidence            46788556 45899999999999999999977778898  899999999999999987654 34444 445999999999


Q ss_pred             cccc-CCCC---CCCCcEEEccCCcccccCChhhcCCCCC----CEEEcccCcccccCCCcccc----------------
Q 039564           80 LQGP-IPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSL----YILDLSDNNLSGELPRCLGN----------------  135 (485)
Q Consensus        80 l~~~-~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~----------------  135 (485)
                      +++. .|..   +++|++|++++|.+++..+..++.+++|    +.|++++|.+++..|..+..                
T Consensus       136 l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~  215 (570)
T 2z63_A          136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN  215 (570)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTT
T ss_pred             cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccccc
Confidence            9873 4554   8999999999999998778888877777    78888888877544432211                


Q ss_pred             ----------------------------------------------------------CcccccCCCCccEEEccCCccc
Q 039564          136 ----------------------------------------------------------FSDTFMNGSNLGIIDMSHNLLQ  157 (485)
Q Consensus       136 ----------------------------------------------------------l~~~~~~l~~L~~L~Ls~n~i~  157 (485)
                                                                                ....|..+++|++|++++|.++
T Consensus       216 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  295 (570)
T 2z63_A          216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE  295 (570)
T ss_dssp             HHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC
T ss_pred             chhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch
Confidence                                                                      0123445677888888888777


Q ss_pred             ccCCccccCCCCCcEEEccCCcccCCcChhh-------------------hCCCCCCEEEeecccccccc--CCccccCC
Q 039564          158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWL-------------------GTLSELDILVLQSNNFHGEI--KEHKMECG  216 (485)
Q Consensus       158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------------~~l~~L~~L~L~~n~l~~~~--~~~~~~~~  216 (485)
                       .+|+.+..+ +|++|++++|.+.......+                   ..+++|++|++++|.+.+..  +..+  ..
T Consensus       296 -~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~  371 (570)
T 2z63_A          296 -RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD--FG  371 (570)
T ss_dssp             -SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHH--HT
T ss_pred             -hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccc--cc
Confidence             466655555 55555555554432221111                   45677777888777776442  3333  56


Q ss_pred             CCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc---cc
Q 039564          217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE---KI  293 (485)
Q Consensus       217 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~  293 (485)
                      +++|++|++++|.+. .++.. +..+++|+.+++.++........     ..+... ..+..+++..+.......   ..
T Consensus       372 ~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~  443 (570)
T 2z63_A          372 TTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEF-----SVFLSL-RNLIYLDISHTHTRVAFNGIFNG  443 (570)
T ss_dssp             CSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTS-----CTTTTC-TTCCEEECTTSCCEECCTTTTTT
T ss_pred             cCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccch-----hhhhcC-CCCCEEeCcCCcccccchhhhhc
Confidence            677777777777776 34433 66677777777665432221100     001111 234555555554433222   33


Q ss_pred             cccccEEEcCCCcCc-ccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEE
Q 039564          294 PYILTAVILSSNGFH-GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFF  372 (485)
Q Consensus       294 ~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  372 (485)
                      ++.|+.|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..|..+++|+.|
T Consensus       444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence            678999999999997 5788999999999999999999998889999999999999999999998888889999999999


Q ss_pred             eccCCcccccCCCC
Q 039564          373 NVSHNNLTGPIPEA  386 (485)
Q Consensus       373 ~l~~N~l~~~~p~~  386 (485)
                      ++++|++++.+|..
T Consensus       524 ~l~~N~~~~~~~~~  537 (570)
T 2z63_A          524 WLHTNPWDCSCPRI  537 (570)
T ss_dssp             ECCSSCBCCCTTTT
T ss_pred             EecCCcccCCCcch
Confidence            99999999988764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.5e-36  Score=303.71  Aligned_cols=338  Identities=20%  Similarity=0.192  Sum_probs=266.1

Q ss_pred             CCCCCCCCC-hhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            1 RSCNLFEFP-NFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         1 ~~n~l~~~p-~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      ++|.+..+| ..|+++++|++|+|++|++++..|..|.  .+++|++|++++|.++++ |.  . .+ ..|++|++++|.
T Consensus        29 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l-p~--~-~l-~~L~~L~L~~N~  101 (520)
T 2z7x_B           29 SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLDLSHNKLVKI-SC--H-PT-VNLKHLDLSFNA  101 (520)
T ss_dssp             CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEECCSSCCCEE-EC--C-CC-CCCSEEECCSSC
T ss_pred             CCCcccccChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEecCCCceeec-Cc--c-cc-CCccEEeccCCc
Confidence            578896565 6999999999999999999988888998  899999999999999965 33  2 44 445999999999


Q ss_pred             cccc-CCCC---CCCCcEEEccCCcccccCChhhcCCCCC--CEEEcccCcc--cccCCCccccCc--------------
Q 039564           80 LQGP-IPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSL--YILDLSDNNL--SGELPRCLGNFS--------------  137 (485)
Q Consensus        80 l~~~-~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~--------------  137 (485)
                      +++. .|..   +++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..++.+.              
T Consensus       102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  178 (520)
T 2z7x_B          102 FDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF  178 (520)
T ss_dssp             CSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred             cccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence            9874 4443   8999999999999986   457778888  9999999998  667776665532              


Q ss_pred             -----cc------------------------------ccC---------------------------CCCccEEEccCCc
Q 039564          138 -----DT------------------------------FMN---------------------------GSNLGIIDMSHNL  155 (485)
Q Consensus       138 -----~~------------------------------~~~---------------------------l~~L~~L~Ls~n~  155 (485)
                           ..                              +..                           .++|++|++++|.
T Consensus       179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  258 (520)
T 2z7x_B          179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK  258 (520)
T ss_dssp             CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred             hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence                 00                              111                           1367888888888


Q ss_pred             ccccCCccc-----cCCCCCcEEEccCCcccCCcC-hh-------------------------hhCCCCCCEEEeecccc
Q 039564          156 LQGRIPKSL-----ANCAVLEIIDLGNNQIIDTFP-AW-------------------------LGTLSELDILVLQSNNF  204 (485)
Q Consensus       156 i~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~-~~-------------------------~~~l~~L~~L~L~~n~l  204 (485)
                      +++.+|..+     ..+++|+.+++++|.+  .+| ..                         +..+++|++|++++|.+
T Consensus       259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l  336 (520)
T 2z7x_B          259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL  336 (520)
T ss_dssp             EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred             ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence            888888887     6777777777666665  222 11                         16889999999999999


Q ss_pred             ccccCCccccCCCCCccEEEccCccCCc--cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEee
Q 039564          205 HGEIKEHKMECGFPKLRIVDLSNNSFTG--NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMS  282 (485)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  282 (485)
                      .+.+|..+  ..+++|++|++++|.+.+  .+| ..+..+++|+.++++++.....+...                    
T Consensus       337 ~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~--------------------  393 (520)
T 2z7x_B          337 TDTVFENC--GHLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKG--------------------  393 (520)
T ss_dssp             CTTTTTTC--CCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGC--------------------
T ss_pred             Chhhhhhh--ccCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECCCCcCCcccccc--------------------
Confidence            98888877  789999999999999984  222 34778888988888765433211100                    


Q ss_pred             ecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCccc
Q 039564          283 NKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQ  362 (485)
Q Consensus       283 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  362 (485)
                             ....++.|+.|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..
T Consensus       394 -------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  462 (520)
T 2z7x_B          394 -------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG  462 (520)
T ss_dssp             -------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred             -------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence                   012256799999999999888877664  79999999999999 78888889999999999999999 56654


Q ss_pred             -ccCCCCCCEEeccCCcccccCC
Q 039564          363 -LTGLTFLEFFNVSHNNLTGPIP  384 (485)
Q Consensus       363 -~~~l~~L~~L~l~~N~l~~~~p  384 (485)
                       +..+++|+.|++++|++++..+
T Consensus       463 ~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          463 IFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhccCCcccEEECcCCCCcccCC
Confidence             8999999999999999997554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.8e-36  Score=283.85  Aligned_cols=259  Identities=32%  Similarity=0.494  Sum_probs=233.1

Q ss_pred             CCCcEEEccCCcccc--cCChhhcCCCCCCEEEccc-CcccccCCCccccCcccccCCCCccEEEccCCcccccCCcccc
Q 039564           89 TKTRHYLVSKNNLTG--EIPSWICNLSSLYILDLSD-NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA  165 (485)
Q Consensus        89 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  165 (485)
                      .++++|++++|.+.+  .+|..|.++++|++|++++ |.+.+.+|..++.       +++|++|++++|.+++.+|..|.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-------l~~L~~L~Ls~n~l~~~~p~~~~  122 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-------LTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-------CTTCSEEEEEEECCEEECCGGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-------CCCCCEEECcCCeeCCcCCHHHh
Confidence            578889999999988  8899999999999999995 8898888876655       48999999999999999999999


Q ss_pred             CCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCC-CccEEEccCccCCccCChhhhccccc
Q 039564          166 NCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFP-KLRIVDLSNNSFTGNLPSKYFQCWNA  244 (485)
Q Consensus       166 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~  244 (485)
                      .+++|++|++++|.+.+..|..|..+++|++|++++|.+.+.+|..+  ..++ +|++|++++|.+.+.+|..+ ..   
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~---  196 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN---  196 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG---
T ss_pred             CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC---
Confidence            99999999999999998999999999999999999999998888887  6777 99999999999987777542 11   


Q ss_pred             ceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEE
Q 039564          245 MKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVL  324 (485)
Q Consensus       245 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  324 (485)
                                                                       +. |+.|++++|.+.+..|..+..+++|++|
T Consensus       197 -------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          197 -------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             -------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             -------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence                                                             12 8899999999999999999999999999


Q ss_pred             eCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 039564          325 SLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLC  404 (485)
Q Consensus       325 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc  404 (485)
                      ++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|....++.+..+.+.+||++|
T Consensus       227 ~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          227 HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             ECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             ECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence            9999999976666 888999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             CCCCCCCC
Q 039564          405 GKPLFKEC  412 (485)
Q Consensus       405 ~~~~~~~c  412 (485)
                      +.|+. .|
T Consensus       306 ~~p~~-~C  312 (313)
T 1ogq_A          306 GSPLP-AC  312 (313)
T ss_dssp             STTSS-CC
T ss_pred             CCCCC-CC
Confidence            98875 46

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.7e-35  Score=302.91  Aligned_cols=338  Identities=18%  Similarity=0.182  Sum_probs=260.5

Q ss_pred             CCCCCCCCC-hhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            1 RSCNLFEFP-NFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         1 ~~n~l~~~p-~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      ++|.+..+| ..|+++++|++|+|++|.+++..|+.|.  .+++|++|++++|.++.+ |.  . .+ ..|++|++++|.
T Consensus        60 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l-p~--~-~l-~~L~~L~Ls~N~  132 (562)
T 3a79_B           60 SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLDVSHNRLQNI-SC--C-PM-ASLRHLDLSFND  132 (562)
T ss_dssp             CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEECTTSCCCEE-CS--C-CC-TTCSEEECCSSC
T ss_pred             CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC--CCCCCCEEECCCCcCCcc-Cc--c-cc-ccCCEEECCCCC
Confidence            578896666 6999999999999999999988888898  899999999999999965 33  2 44 445999999999


Q ss_pred             ccccC-CCC---CCCCcEEEccCCcccccCChhhcCCCCC--CEEEcccCcc--cccCCCccccCc--------------
Q 039564           80 LQGPI-PAP---PTKTRHYLVSKNNLTGEIPSWICNLSSL--YILDLSDNNL--SGELPRCLGNFS--------------  137 (485)
Q Consensus        80 l~~~~-~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~--------------  137 (485)
                      +++.. |..   +++|++|++++|.+.+.   .+..+++|  ++|++++|.+  ++..|..+..+.              
T Consensus       133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  209 (562)
T 3a79_B          133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF  209 (562)
T ss_dssp             CSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred             ccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence            98743 333   89999999999999853   45556666  9999999998  767776665532              


Q ss_pred             -----cccc-------------------------------------------------------CCCCccEEEccCCccc
Q 039564          138 -----DTFM-------------------------------------------------------NGSNLGIIDMSHNLLQ  157 (485)
Q Consensus       138 -----~~~~-------------------------------------------------------~l~~L~~L~Ls~n~i~  157 (485)
                           ..+.                                                       ..++|++|++++|.++
T Consensus       210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  289 (562)
T 3a79_B          210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT  289 (562)
T ss_dssp             CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred             hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence                 0000                                                       1127888888888888


Q ss_pred             ccCCccc-----cCCC--------------------------CCcEEEccCCcccCCcChhhhCCCCCCEEEeecccccc
Q 039564          158 GRIPKSL-----ANCA--------------------------VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHG  206 (485)
Q Consensus       158 ~~~~~~~-----~~l~--------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  206 (485)
                      +.+|..+     ..++                          +|++|++++|.+.....  ...+++|++|++++|.+.+
T Consensus       290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~  367 (562)
T 3a79_B          290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTD  367 (562)
T ss_dssp             SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCT
T ss_pred             ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCcccc
Confidence            8888766     3333                          36666666666543221  2678999999999999998


Q ss_pred             ccCCccccCCCCCccEEEccCccCCccCCh--hhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeec
Q 039564          207 EIKEHKMECGFPKLRIVDLSNNSFTGNLPS--KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNK  284 (485)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  284 (485)
                      .+|..+  ..+++|++|++++|.++ .++.  ..+..+++|+.++++++........                       
T Consensus       368 ~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----------------------  421 (562)
T 3a79_B          368 SVFQGC--STLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYD-----------------------  421 (562)
T ss_dssp             TTTTTC--CSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-----------------------
T ss_pred             chhhhh--cccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccCh-----------------------
Confidence            788777  78899999999999998 4443  3467788888888776543221100                       


Q ss_pred             CcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCccc-c
Q 039564          285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQ-L  363 (485)
Q Consensus       285 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~  363 (485)
                          .....++.|+.|++++|.+++..|..+.  ++|++|+|++|+++ .+|..+..+++|+.|++++|+++ .+|.. +
T Consensus       422 ----~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~  493 (562)
T 3a79_B          422 ----RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVF  493 (562)
T ss_dssp             ----CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTST
T ss_pred             ----hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHH
Confidence                0111256799999999999887776554  79999999999999 77777779999999999999999 56655 8


Q ss_pred             cCCCCCCEEeccCCcccccCC
Q 039564          364 TGLTFLEFFNVSHNNLTGPIP  384 (485)
Q Consensus       364 ~~l~~L~~L~l~~N~l~~~~p  384 (485)
                      ..+++|+.+++++|+++|.++
T Consensus       494 ~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          494 DRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTCTTCCCEECCSCCBCCCHH
T ss_pred             hcCCCCCEEEecCCCcCCCcc
Confidence            999999999999999998655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=8.7e-35  Score=289.79  Aligned_cols=319  Identities=25%  Similarity=0.260  Sum_probs=150.7

Q ss_pred             CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCC-------------cEEEccCCcCcCcCCCCCCCCCC
Q 039564            1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNF-------------SYLNLSKNSLTGFDQHPSVFPWS   67 (485)
Q Consensus         1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~~~~~~~~~   67 (485)
                      ++|+++++|++++++++|++|++++|.+.|.+|..++  .+++|             ++|++++|.++++...      .
T Consensus        19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~------~   90 (454)
T 1jl5_A           19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG--EQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL------P   90 (454)
T ss_dssp             ---------------CCHHHHHHHHHHHHHTSCTTSC--CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC------C
T ss_pred             ccCchhhCChhHhcccchhhhhccCCcccccCCcccc--cchhcchhhhhhhhccCCCEEEecCCccccCCCC------c
Confidence            3577889999999999999999999999888888887  66543             7777777777664221      1


Q ss_pred             CCccEEEcCCCcccccCCCCCC--------------------CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccc
Q 039564           68 SGEFTLDLSSNFLQGPIPAPPT--------------------KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSG  127 (485)
Q Consensus        68 ~lL~~L~l~~n~l~~~~~~~~~--------------------~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  127 (485)
                      ..|++|++++|.+++ +|..++                    +|++|++++|.+++ +| .|+++++|++|++++|+++ 
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-  166 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-  166 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-
T ss_pred             CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-
Confidence            233666666665554 333344                    44555555555443 34 3455555555555555554 


Q ss_pred             cCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccc
Q 039564          128 ELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE  207 (485)
Q Consensus       128 ~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  207 (485)
                      .+|..+          .+|++|++++|.+++ +| .+..+++|++|++++|.+++. |..   .++|++|++++|.+. .
T Consensus       167 ~lp~~~----------~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~  229 (454)
T 1jl5_A          167 KLPDLP----------PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-E  229 (454)
T ss_dssp             CCCCCC----------TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-S
T ss_pred             ccCCCc----------ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-c
Confidence            233211          345555555555543 33 345555555555555555431 211   134555555555554 3


Q ss_pred             cCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcc
Q 039564          208 IKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQM  287 (485)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  287 (485)
                      +|. +  ..+++|++|++++|.++ .+|..    ..+|+.++++++...           .++..+..+..+++..+...
T Consensus       230 lp~-~--~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~-----------~l~~~~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          230 LPE-L--QNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLT-----------DLPELPQSLTFLDVSENIFS  290 (454)
T ss_dssp             CCC-C--TTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCS-----------CCCCCCTTCCEEECCSSCCS
T ss_pred             ccc-c--CCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCccc-----------ccCcccCcCCEEECcCCccC
Confidence            442 2  44555555555555554 23321    234444444332211           11112233444444444332


Q ss_pred             cccccccccccEEEcCCCcCcccCchhhccC-CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCC
Q 039564          288 LSYEKIPYILTAVILSSNGFHGEIPTSIANL-KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGL  366 (485)
Q Consensus       288 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  366 (485)
                      . ....++.|+.|++++|.+++ ++    .+ ++|++|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+
T Consensus       291 ~-l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l  356 (454)
T 1jl5_A          291 G-LSELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LP  356 (454)
T ss_dssp             E-ESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CC
T ss_pred             c-ccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hh
Confidence            2 11223445555555555542 11    12 355555665555553 3332   355555555555555 3443   24


Q ss_pred             CCCCEEeccCCcccc
Q 039564          367 TFLEFFNVSHNNLTG  381 (485)
Q Consensus       367 ~~L~~L~l~~N~l~~  381 (485)
                      ++|+.|++++|++++
T Consensus       357 ~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          357 QNLKQLHVEYNPLRE  371 (454)
T ss_dssp             TTCCEEECCSSCCSS
T ss_pred             hhccEEECCCCCCCc
Confidence            555555555555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.7e-34  Score=279.71  Aligned_cols=309  Identities=19%  Similarity=0.214  Sum_probs=216.5

Q ss_pred             CCCCCCEEECCCCcCCCCCCcc-cccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CC
Q 039564           14 QQKHLKALDLSSNKLHGNIPKW-LLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PT   89 (485)
Q Consensus        14 ~l~~L~~L~Ls~n~~~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~   89 (485)
                      .++++++|++++|.+. .+|.. +.  .+++|++|++++|.++++.+.  .+.....|++|++++|.+++..+..   ++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLD--SFRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP  117 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHH--HCCCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCCceEEEecCCchh-hCChhHhc--ccccCcEEECCCCcccccChh--hccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence            3688999999999988 45544 56  789999999999999877654  3444445599999999998877654   78


Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564           90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV  169 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  169 (485)
                      +|++|++++|.++...+..|.++++|++|++++|.+++..|..       |..+++|++|++++|.+++.   .+..+++
T Consensus       118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~---~~~~l~~  187 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-------FQATTSLQNLQLSSNRLTHV---DLSLIPS  187 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-------TSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred             CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh-------ccCCCCCCEEECCCCcCCcc---ccccccc
Confidence            8999999999998544555788999999999999988554533       44568999999999998854   3566788


Q ss_pred             CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564          170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN  249 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~  249 (485)
                      |++|++++|.+.+.     ...++|++|++++|.+... +..    ..++|+.|++++|.+++ .+  .+..++      
T Consensus       188 L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~----~~~~L~~L~l~~n~l~~-~~--~l~~l~------  248 (390)
T 3o6n_A          188 LFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP----VNVELTILKLQHNNLTD-TA--WLLNYP------  248 (390)
T ss_dssp             CSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC----CCSSCCEEECCSSCCCC-CG--GGGGCT------
T ss_pred             cceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc----ccccccEEECCCCCCcc-cH--HHcCCC------
Confidence            99999999987542     3456899999999988743 433    24789999999998874 22  233333      


Q ss_pred             ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCc
Q 039564          250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANN  329 (485)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  329 (485)
                                                                    .|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus       249 ----------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          249 ----------------------------------------------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             ----------------------------------------------TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred             ----------------------------------------------CccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence                                                          3666666666666555666666666666666666


Q ss_pred             eecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          330 NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGK  406 (485)
Q Consensus       330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~  406 (485)
                      ++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++.. + ...++.+..+++.+||+.|++
T Consensus       283 ~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          283 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred             cCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence            6663 3444555666666666666666 4455555666666666666666543 2 234455556666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.3e-34  Score=293.50  Aligned_cols=332  Identities=18%  Similarity=0.173  Sum_probs=204.2

Q ss_pred             CCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCC
Q 039564           15 QKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKT   91 (485)
Q Consensus        15 l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L   91 (485)
                      +.+++.|++++|.+....+..+.  .+++|++|++++|.++++.+.  .+..+..|++|++++|.+++..+..   +++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            46677777777777643333344  567777777777777765543  2333333477777777777665543   6677


Q ss_pred             cEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCc
Q 039564           92 RHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLE  171 (485)
Q Consensus        92 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  171 (485)
                      ++|++++|.+++..+..|+++++|++|++++|.+++..|..       |..+++|++|++++|.+++..   +..+++|+
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~  195 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-------FQATTSLQNLQLSSNRLTHVD---LSLIPSLF  195 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-------TTTCTTCCEEECTTSCCSBCC---GGGCTTCS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-------hhcCCcCcEEECcCCCCCCcC---hhhhhhhh
Confidence            77777777777544445677777777777777776544433       334467777777777776432   44566677


Q ss_pred             EEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecccc
Q 039564          172 IIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS  251 (485)
Q Consensus       172 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~  251 (485)
                      +|++++|.+.+     +...++|+.|++++|.+... +...    .++|+.|++++|.+++.   ..+..+++|+.++++
T Consensus       196 ~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~----~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls  262 (597)
T 3oja_B          196 HANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV----NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLS  262 (597)
T ss_dssp             EEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC----CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECC
T ss_pred             hhhcccCcccc-----ccCCchhheeeccCCccccc-cccc----CCCCCEEECCCCCCCCC---hhhccCCCCCEEECC
Confidence            77777776643     23345677777777776532 2222    25677777777776642   234455555554444


Q ss_pred             chhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCcee
Q 039564          252 QLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNL  331 (485)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  331 (485)
                      ++.......                            .....++.|+.|+|++|.+++ +|..+..+++|+.|+|++|++
T Consensus       263 ~N~l~~~~~----------------------------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          263 YNELEKIMY----------------------------HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             SSCCCEEES----------------------------GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             CCccCCCCH----------------------------HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence            322111100                            001114457888888888774 566666778888888888888


Q ss_pred             cccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          332 EGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP  407 (485)
Q Consensus       332 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  407 (485)
                      + .+|..+..+++|+.|++++|.+++. |  +..+++|+.|++++|++.+.... ..+..+....+.+++..|+.+
T Consensus       314 ~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          314 L-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             C-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             C-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            7 5666777788888888888888743 2  56677888888888887764321 123344445566777777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.9e-34  Score=277.98  Aligned_cols=322  Identities=23%  Similarity=0.192  Sum_probs=260.9

Q ss_pred             CCCCCCCChh-hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            2 SCNLFEFPNF-LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         2 ~n~l~~~p~~-~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      +|.++.+|.. ++.+++|++|++++|.+.+..+..|.  .+++|++|++++|.+++..+.  .+.....|++|++++|.+
T Consensus        54 ~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l  129 (390)
T 3o6n_A           54 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDL  129 (390)
T ss_dssp             SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCC
T ss_pred             CCchhhCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHH--HhcCCCCCCEEECCCCcc
Confidence            4567778874 78999999999999999977777888  899999999999999987664  444455559999999999


Q ss_pred             cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564           81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ  157 (485)
Q Consensus        81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~  157 (485)
                      +...+..   +++|++|++++|.+.+..+..|.++++|++|++++|.+++ ++         +..+++|+.|++++|.++
T Consensus       130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---------~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---------LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---------GGGCTTCSEEECCSSCCS
T ss_pred             CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---------cccccccceeeccccccc
Confidence            9766543   8999999999999998888889999999999999999984 33         233589999999999987


Q ss_pred             ccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564          158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK  237 (485)
Q Consensus       158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  237 (485)
                      +.     ...++|++|++++|.+.....   ...++|++|++++|.+.+.  ..+  ..+++|++|++++|.+.+..|..
T Consensus       200 ~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l--~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          200 TL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWL--LNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             EE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGG--GGCTTCSEEECCSSCCCEEESGG
T ss_pred             cc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHH--cCCCCccEEECCCCcCCCcChhH
Confidence            42     344689999999999976533   2358999999999999853  334  67899999999999998554433


Q ss_pred             hhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhcc
Q 039564          238 YFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIAN  317 (485)
Q Consensus       238 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  317 (485)
                       +..                                                    ++.|+.|++++|+++ .+|..+..
T Consensus       268 -~~~----------------------------------------------------l~~L~~L~L~~n~l~-~~~~~~~~  293 (390)
T 3o6n_A          268 -FVK----------------------------------------------------MQRLERLYISNNRLV-ALNLYGQP  293 (390)
T ss_dssp             -GTT----------------------------------------------------CSSCCEEECCSSCCC-EEECSSSC
T ss_pred             -ccc----------------------------------------------------cccCCEEECCCCcCc-ccCcccCC
Confidence             222                                                    344899999999998 46777788


Q ss_pred             CCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCC
Q 039564          318 LKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSF  397 (485)
Q Consensus       318 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~  397 (485)
                      +++|++|++++|+++ .+|..+..+++|+.|++++|.++.. +  +..+++|+.|++++|++.+.... ..+..+....+
T Consensus       294 l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~  368 (390)
T 3o6n_A          294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAV  368 (390)
T ss_dssp             CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTB
T ss_pred             CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcc
Confidence            999999999999998 6777788999999999999999854 3  67889999999999999874221 22334455567


Q ss_pred             CCCCCCCCCCC
Q 039564          398 DGNSGLCGKPL  408 (485)
Q Consensus       398 ~~n~~lc~~~~  408 (485)
                      .+++..|.++.
T Consensus       369 ~~~~~~c~~~~  379 (390)
T 3o6n_A          369 DDADQHCKIDY  379 (390)
T ss_dssp             CCCCSCCCTTC
T ss_pred             cccCceecccc
Confidence            77888887643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.3e-33  Score=279.15  Aligned_cols=333  Identities=24%  Similarity=0.291  Sum_probs=200.7

Q ss_pred             CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCccc
Q 039564            2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQ   81 (485)
Q Consensus         2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~   81 (485)
                      +|.+..+|. +..+++|++|++++|.+.+. |. +.  .+++|++|++++|.+++..+   +..+.. |++|++++|.++
T Consensus        55 ~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~--~l~~L~~L~l~~n~l~~~~~---~~~l~~-L~~L~L~~n~l~  125 (466)
T 1o6v_A           55 RLGIKSIDG-VEYLNNLTQINFSNNQLTDI-TP-LK--NLTKLVDILMNNNQIADITP---LANLTN-LTGLTLFNNQIT  125 (466)
T ss_dssp             SSCCCCCTT-GGGCTTCCEEECCSSCCCCC-GG-GT--TCTTCCEEECCSSCCCCCGG---GTTCTT-CCEEECCSSCCC
T ss_pred             CCCCccCcc-hhhhcCCCEEECCCCccCCc-hh-hh--ccccCCEEECCCCccccChh---hcCCCC-CCEEECCCCCCC
Confidence            455555653 66677777777777777643 33 55  67777777777777766532   333333 377777777776


Q ss_pred             ccCCCC-CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564           82 GPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI  160 (485)
Q Consensus        82 ~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~  160 (485)
                      +..+-. +++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+ +        ..+..+++|++|++++|.+++. 
T Consensus       126 ~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~-~--------~~~~~l~~L~~L~l~~n~l~~~-  192 (466)
T 1o6v_A          126 DIDPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTD-L--------KPLANLTTLERLDISSNKVSDI-  192 (466)
T ss_dssp             CCGGGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCC-C--------GGGTTCTTCCEEECCSSCCCCC-
T ss_pred             CChHHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccC-c--------hhhccCCCCCEEECcCCcCCCC-
Confidence            554322 6777777777777663 33 36667777777765 33331 1        1244567788888888877643 


Q ss_pred             CccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564          161 PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ  240 (485)
Q Consensus       161 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  240 (485)
                       ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+.+ ++ .+  ..+++|+.|++++|.+.+..+   +.
T Consensus       193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l--~~l~~L~~L~l~~n~l~~~~~---~~  262 (466)
T 1o6v_A          193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TL--ASLTNLTDLDLANNQISNLAP---LS  262 (466)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GG--GGCTTCSEEECCSSCCCCCGG---GT
T ss_pred             -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hh--hcCCCCCEEECCCCccccchh---hh
Confidence             346777788888888887766554  5667778888888877763 22 23  467778888888877764332   56


Q ss_pred             ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCC
Q 039564          241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG  320 (485)
Q Consensus       241 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  320 (485)
                      .+++|+.++++++......                              ....++.|+.|++++|.+.+..+  +..+++
T Consensus       263 ~l~~L~~L~l~~n~l~~~~------------------------------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~  310 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNIS------------------------------PLAGLTALTNLELNENQLEDISP--ISNLKN  310 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCG------------------------------GGTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             cCCCCCEEECCCCccCccc------------------------------cccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence            6667777666554321110                              01123446666666666654332  555666


Q ss_pred             CCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCC
Q 039564          321 LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGN  400 (485)
Q Consensus       321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n  400 (485)
                      |+.|++++|++++..|  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..| ...++.+..+.+.+|
T Consensus       311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  385 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCE
T ss_pred             CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCC
Confidence            6666666666664443  45566666666666666643  345566666666666666665554 344455555555555


Q ss_pred             CCC
Q 039564          401 SGL  403 (485)
Q Consensus       401 ~~l  403 (485)
                      ++.
T Consensus       386 ~~~  388 (466)
T 1o6v_A          386 AWT  388 (466)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.2e-32  Score=265.90  Aligned_cols=306  Identities=22%  Similarity=0.300  Sum_probs=202.4

Q ss_pred             hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCC-CCCC
Q 039564           11 FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP-APPT   89 (485)
Q Consensus        11 ~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~-~~~~   89 (485)
                      .+..+++|++|++++|.+. .+|. +.  .+++|++|++++|.++++.+   +.. ...|++|++++|.+++... ..++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~-~~--~~~~L~~L~l~~n~i~~~~~---~~~-l~~L~~L~L~~n~i~~~~~~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG-IE--YLTNLEYLNLNGNQITDISP---LSN-LVKLTNLYIGTNKITDISALQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT-GG--GCTTCCEEECCSSCCCCCGG---GTT-CTTCCEEECCSSCCCCCGGGTTCT
T ss_pred             cchhcccccEEEEeCCccc-cchh-hh--hcCCccEEEccCCccccchh---hhc-CCcCCEEEccCCcccCchHHcCCC
Confidence            4457889999999999988 4554 66  78999999999999987632   344 4445999999999886432 2288


Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564           90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV  169 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  169 (485)
                      +|++|++++|.+.+ ++. +..+++|++|++++|.....++        .+..+++|++|++++|.+.+..+  +..+++
T Consensus       111 ~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~  178 (347)
T 4fmz_A          111 NLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS--------PLSNMTGLNYLTVTESKVKDVTP--IANLTD  178 (347)
T ss_dssp             TCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG--------GGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred             cCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc--------chhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence            99999999999985 443 8899999999999996653433        24556899999999999885443  888999


Q ss_pred             CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564          170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN  249 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~  249 (485)
                      |++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +  ..+++|+.|++++|.+. .++.  +..+++|+.++
T Consensus       179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~  249 (347)
T 4fmz_A          179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V--ANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLE  249 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEE
T ss_pred             CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--h--hcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEE
Confidence            9999999999876544  7889999999999999875443  3  67889999999999987 3433  44444444444


Q ss_pred             ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCc
Q 039564          250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANN  329 (485)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  329 (485)
                      ++++.....                              .....++.|+.|++++|.+++.  ..+..+++|++|++++|
T Consensus       250 l~~n~l~~~------------------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          250 IGTNQISDI------------------------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             CCSSCCCCC------------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             CCCCccCCC------------------------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence            333211000                              0001123355555555555432  23444555555555555


Q ss_pred             eecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564          330 NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL  379 (485)
Q Consensus       330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l  379 (485)
                      ++++..|..+..+++|+.|++++|.+++..|  +..+++|+.|++++|++
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            5554444445555555555555555553333  44455555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.6e-33  Score=289.83  Aligned_cols=310  Identities=18%  Similarity=0.170  Sum_probs=256.5

Q ss_pred             CCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCC
Q 039564           40 SMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLY  116 (485)
Q Consensus        40 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~  116 (485)
                      .+.+++.|++++|.++.+.+.  ++.....|++|++++|.+++..+..   +++|++|++++|.+++..|..|+++++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTH--HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHH--HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            468899999999999886543  5555555699999999999887644   89999999999999988888899999999


Q ss_pred             EEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCE
Q 039564          117 ILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDI  196 (485)
Q Consensus       117 ~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  196 (485)
                      +|+|++|.++ .+|.      ..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..   +..+++|+.
T Consensus       127 ~L~L~~n~l~-~l~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~  196 (597)
T 3oja_B          127 VLVLERNDLS-SLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH  196 (597)
T ss_dssp             EEECCSSCCC-CCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSE
T ss_pred             EEEeeCCCCC-CCCH------HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhh
Confidence            9999999998 5664      33456799999999999999888889999999999999999997753   567899999


Q ss_pred             EEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCccc
Q 039564          197 LVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYY  276 (485)
Q Consensus       197 L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (485)
                      |++++|.+.+.       ...++|+.|++++|.+. .++...   ..+|+.++++++....                   
T Consensus       197 L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~-------------------  246 (597)
T 3oja_B          197 ANVSYNLLSTL-------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD-------------------  246 (597)
T ss_dssp             EECCSSCCSEE-------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC-------------------
T ss_pred             hhcccCccccc-------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC-------------------
Confidence            99999988742       23467999999999987 444322   2455665555432111                   


Q ss_pred             ceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCc
Q 039564          277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS  356 (485)
Q Consensus       277 ~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  356 (485)
                                 ......++.|+.|++++|.+.+..|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++
T Consensus       247 -----------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          247 -----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             -----------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             -----------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence                       0112236679999999999999999999999999999999999995 5777788999999999999999


Q ss_pred             ccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          357 GQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGK  406 (485)
Q Consensus       357 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~  406 (485)
                       .+|..+..+++|+.|++++|.+++..  ...++.+..+++.+||+.|+|
T Consensus       315 -~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          315 -HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             -CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             -ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence             68888899999999999999998653  345678888999999999976

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.1e-32  Score=273.59  Aligned_cols=314  Identities=23%  Similarity=0.264  Sum_probs=256.2

Q ss_pred             CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      ++|.+..+|. ++++++|++|++++|.+.+. +. +.  .+++|++|++++|.+++..+   +..+.. |++|++++|.+
T Consensus        76 s~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~--~l~~L~~L~L~~n~l~~~~~---~~~l~~-L~~L~l~~n~l  146 (466)
T 1o6v_A           76 SNNQLTDITP-LKNLTKLVDILMNNNQIADI-TP-LA--NLTNLTGLTLFNNQITDIDP---LKNLTN-LNRLELSSNTI  146 (466)
T ss_dssp             CSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GT--TCTTCCEEECCSSCCCCCGG---GTTCTT-CSEEEEEEEEE
T ss_pred             CCCccCCchh-hhccccCCEEECCCCccccC-hh-hc--CCCCCCEEECCCCCCCCChH---HcCCCC-CCEEECCCCcc
Confidence            4688877877 99999999999999999954 43 77  89999999999999998632   444444 59999999999


Q ss_pred             cccCCC-CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc
Q 039564           81 QGPIPA-PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR  159 (485)
Q Consensus        81 ~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~  159 (485)
                      ++...- .+++|++|+++ |.+.+. + .+.++++|++|++++|.+++ ++        .+..+++|++|++++|.+++.
T Consensus       147 ~~~~~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~-~~--------~l~~l~~L~~L~l~~n~l~~~  214 (466)
T 1o6v_A          147 SDISALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSD-IS--------VLAKLTNLESLIATNNQISDI  214 (466)
T ss_dssp             CCCGGGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCC-CG--------GGGGCTTCSEEECCSSCCCCC
T ss_pred             CCChhhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCC-Ch--------hhccCCCCCEEEecCCccccc
Confidence            875332 28999999997 455533 2 38899999999999999873 32        245569999999999999966


Q ss_pred             CCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhh
Q 039564          160 IPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYF  239 (485)
Q Consensus       160 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  239 (485)
                      .|  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +  ..+++|+.|++++|.+.+ ++.  +
T Consensus       215 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~-~~~--~  283 (466)
T 1o6v_A          215 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L--SGLTKLTELKLGANQISN-ISP--L  283 (466)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G--TTCTTCSEEECCSSCCCC-CGG--G
T ss_pred             cc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h--hcCCCCCEEECCCCccCc-ccc--c
Confidence            55  77899999999999999764  468899999999999999986544  4  678999999999999984 443  6


Q ss_pred             cccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCC
Q 039564          240 QCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLK  319 (485)
Q Consensus       240 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  319 (485)
                      ..+++|+.++++++.....                              .....++.|+.|++++|.+.+..|  +..++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~------------------------------~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~  331 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDI------------------------------SPISNLKNLTYLTLYFNNISDISP--VSSLT  331 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCC------------------------------GGGGGCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred             cCCCccCeEEcCCCcccCc------------------------------hhhcCCCCCCEEECcCCcCCCchh--hccCc
Confidence            7788888888776432211                              001235679999999999997665  78999


Q ss_pred             CCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccccc
Q 039564          320 GLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP  382 (485)
Q Consensus       320 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  382 (485)
                      +|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            999999999999865  468899999999999999998776  89999999999999999973

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=5.4e-32  Score=259.42  Aligned_cols=287  Identities=21%  Similarity=0.222  Sum_probs=222.0

Q ss_pred             CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCc
Q 039564           16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTR   92 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~   92 (485)
                      .+++.++++++.+. .+|..+.    ++|++|++++|.++++.+. .+..+ ..|++|++++|.+++..|..   +++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~----~~l~~L~L~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP----PDTALLDLQNNKITEIKDG-DFKNL-KNLHTLILINNKISKISPGAFAPLVKLE  103 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC----TTCCEEECCSSCCCCBCTT-TTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCCeEEEecCCCcc-ccCccCC----CCCeEEECCCCcCCEeChh-hhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence            38899999999888 6776554    5889999999999887654 34444 44599999999998876654   78899


Q ss_pred             EEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc--cCCccccCCCCC
Q 039564           93 HYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG--RIPKSLANCAVL  170 (485)
Q Consensus        93 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L  170 (485)
                      +|++++|.++ .+|..+.  ++|++|++++|.+++..+       ..|..+++|++|++++|.+..  ..+..+..+++|
T Consensus       104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  173 (330)
T 1xku_A          104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRK-------SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  173 (330)
T ss_dssp             EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCH-------HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCH-------hHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence            9999999988 5665553  789999999998884433       334556899999999999864  667788899999


Q ss_pred             cEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccc
Q 039564          171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNA  250 (485)
Q Consensus       171 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~  250 (485)
                      ++|++++|.++.. |..+  .++|++|++++|.+.+..+..+  ..+++|+.|++++|.+.+..+ ..+..         
T Consensus       174 ~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~-~~~~~---------  238 (330)
T 1xku_A          174 SYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDN-GSLAN---------  238 (330)
T ss_dssp             CEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCEECT-TTGGG---------
T ss_pred             CEEECCCCccccC-Cccc--cccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCceeCh-hhccC---------
Confidence            9999999998654 4333  2789999999999987666666  788999999999999884333 22222         


Q ss_pred             cchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCce
Q 039564          251 SQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNN  330 (485)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  330 (485)
                                                                 ++.|+.|++++|.++ .+|..+..+++|++|++++|+
T Consensus       239 -------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          239 -------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             -------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred             -------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence                                                       334888999999888 788888899999999999999


Q ss_pred             ecccCCccccC------CCCCCEEECCCCcCcc--cCcccccCCCCCCEEeccCCc
Q 039564          331 LEGHIPSCFGD------LTKLESLDLSNNWFSG--QIPQQLTGLTFLEFFNVSHNN  378 (485)
Q Consensus       331 l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~  378 (485)
                      +++..+..|..      .+.|+.|++++|.+..  ..|..|..++.++.+++++|+
T Consensus       275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            98776666643      3778899999998864  567788889999999999885

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.3e-32  Score=263.95  Aligned_cols=303  Identities=19%  Similarity=0.255  Sum_probs=246.1

Q ss_pred             CCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCC-CCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 039564           40 SMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPA-PPTKTRHYLVSKNNLTGEIPSWICNLSSLYIL  118 (485)
Q Consensus        40 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  118 (485)
                      .+++|++|++++|.++.+.   .+..+ +.|++|++++|.+++..+- .+++|++|++++|.++. ++ .|.++++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~~~---~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ---GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT---TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             hcccccEEEEeCCccccch---hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence            6789999999999998752   34444 4459999999999876542 38999999999999985 44 69999999999


Q ss_pred             EcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEE
Q 039564          119 DLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILV  198 (485)
Q Consensus       119 ~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  198 (485)
                      ++++|.+. .+|.        +..+++|++|++++|.....+ ..+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus       116 ~l~~n~i~-~~~~--------~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~  183 (347)
T 4fmz_A          116 YLNEDNIS-DISP--------LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS  183 (347)
T ss_dssp             ECTTSCCC-CCGG--------GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred             ECcCCccc-Cchh--------hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence            99999988 4432        456699999999999766444 458999999999999999976654  88999999999


Q ss_pred             eeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccce
Q 039564          199 LQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYS  278 (485)
Q Consensus       199 L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (485)
                      +++|.+.+. +. +  ..+++|+.+++++|.+.+ ++.  +..+++|+.++++++.....                    
T Consensus       184 l~~n~l~~~-~~-~--~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~--------------------  236 (347)
T 4fmz_A          184 LNYNQIEDI-SP-L--ASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDL--------------------  236 (347)
T ss_dssp             CTTSCCCCC-GG-G--GGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC--------------------
T ss_pred             ccCCccccc-cc-c--cCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCC--------------------
Confidence            999998844 33 4  678999999999999984 333  67788888887776432211                    


Q ss_pred             EEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCccc
Q 039564          279 LTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQ  358 (485)
Q Consensus       279 l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  358 (485)
                                .....++.|+.|++++|.+++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       237 ----------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~  302 (347)
T 4fmz_A          237 ----------SPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE  302 (347)
T ss_dssp             ----------GGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred             ----------cchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence                      0012356799999999999853  4688999999999999999854  4588999999999999999988


Q ss_pred             CcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCC
Q 039564          359 IPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSG  402 (485)
Q Consensus       359 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  402 (485)
                      .|..+..+++|+.|++++|++++..| ...++.+..+++.+|+.
T Consensus       303 ~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          303 DMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             ChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            89999999999999999999998766 45677888888888863

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.4e-32  Score=270.54  Aligned_cols=209  Identities=18%  Similarity=0.168  Sum_probs=127.8

Q ss_pred             ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCC
Q 039564            9 PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPP   88 (485)
Q Consensus         9 p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~   88 (485)
                      +..++++++|++|++++|.+++ +| .+.  .+++|++|++++|.++++    .+..+.. |++|++++|.+++.....+
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~--~l~~L~~L~Ls~n~l~~~----~~~~l~~-L~~L~Ls~N~l~~~~~~~l  105 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITD-MT-GIE--KLTGLTKLICTSNNITTL----DLSQNTN-LTYLACDSNKLTNLDVTPL  105 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCC-CT-TGG--GCTTCSEEECCSSCCSCC----CCTTCTT-CSEEECCSSCCSCCCCTTC
T ss_pred             ccChhHcCCCCEEEccCCCccc-Ch-hhc--ccCCCCEEEccCCcCCeE----ccccCCC-CCEEECcCCCCceeecCCC
Confidence            4466677777777777777774 35 455  677777777777777764    1333333 3777777777776543337


Q ss_pred             CCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCC
Q 039564           89 TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCA  168 (485)
Q Consensus        89 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  168 (485)
                      ++|++|++++|.+++ +|  ++.+++|++|++++|.+++ +|         +..+++|++|++++|...+.+  .+..++
T Consensus       106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---------l~~l~~L~~L~l~~n~~~~~~--~~~~l~  170 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---------VSHNTQLTELDCHLNKKITKL--DVTPQT  170 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---------CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred             CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---------cccCCcCCEEECCCCCccccc--ccccCC
Confidence            777777777777775 33  6677777777777777764 32         223456666666666443333  355566


Q ss_pred             CCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceec
Q 039564          169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV  248 (485)
Q Consensus       169 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l  248 (485)
                      +|++|++++|.+++. |  +..+++|+.|++++|.+.+.   .+  ..+++|+.|++++|.+++ +|   +..+++|+.+
T Consensus       171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l--~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L  238 (457)
T 3bz5_A          171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DL--NQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYF  238 (457)
T ss_dssp             TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CC--TTCTTCSEEECCSSCCSC-CC---CTTCTTCSEE
T ss_pred             cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---cc--ccCCCCCEEECcCCcccc-cC---ccccCCCCEE
Confidence            666666666666553 2  55566666666666666543   12  455666666666666663 44   4455555555


Q ss_pred             cccch
Q 039564          249 NASQL  253 (485)
Q Consensus       249 ~~~~~  253 (485)
                      +++++
T Consensus       239 ~l~~N  243 (457)
T 3bz5_A          239 DCSVN  243 (457)
T ss_dssp             ECCSS
T ss_pred             EeeCC
Confidence            55543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=3.9e-32  Score=260.54  Aligned_cols=298  Identities=22%  Similarity=0.270  Sum_probs=232.7

Q ss_pred             CCCCCChhhhCC------CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCC
Q 039564            4 NLFEFPNFLKQQ------KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSS   77 (485)
Q Consensus         4 ~l~~~p~~~~~l------~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~   77 (485)
                      .+.++|..+...      .+++.++++++.+. .+|..+.    ++|++|++++|.++++.+. .+..+. .|++|++++
T Consensus        15 ~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~----~~l~~L~l~~n~i~~~~~~-~~~~l~-~L~~L~L~~   87 (332)
T 2ft3_A           15 DLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS----PDTTLLDLQNNDISELRKD-DFKGLQ-HLYALVLVN   87 (332)
T ss_dssp             ----------CCCCSSCEEETTEEECCSSCCS-SCCSCCC----TTCCEEECCSSCCCEECTT-TTTTCT-TCCEEECCS
T ss_pred             ccccCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC----CCCeEEECCCCcCCccCHh-HhhCCC-CCcEEECCC
Confidence            456778765543      37999999999998 7887654    6899999999999987664 344444 459999999


Q ss_pred             CcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC
Q 039564           78 NFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN  154 (485)
Q Consensus        78 n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n  154 (485)
                      |.+++..|..   +++|++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.      ..|..+++|++|++++|
T Consensus        88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~------~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A           88 NKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPK------GVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             SCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCS------GGGSSCSSCCEEECCSC
T ss_pred             CccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCH------hHhCCCccCCEEECCCC
Confidence            9999876654   899999999999998 5666554  89999999999998 4443      33556799999999999


Q ss_pred             cccc--cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCc
Q 039564          155 LLQG--RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG  232 (485)
Q Consensus       155 ~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  232 (485)
                      .++.  ..+..+..+ +|++|++++|.+++. |..+.  ++|++|++++|.+.+..+..+  ..+++|+.|++++|.+.+
T Consensus       158 ~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          158 PLENSGFEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCC
T ss_pred             ccccCCCCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCc
Confidence            9963  677888888 999999999999764 44332  799999999999997766777  789999999999999984


Q ss_pred             cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCc
Q 039564          233 NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP  312 (485)
Q Consensus       233 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  312 (485)
                       ++...+..                                                    ++.|+.|++++|+++ .+|
T Consensus       232 -~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~l~-~lp  257 (332)
T 2ft3_A          232 -IENGSLSF----------------------------------------------------LPTLRELHLDNNKLS-RVP  257 (332)
T ss_dssp             -CCTTGGGG----------------------------------------------------CTTCCEEECCSSCCC-BCC
T ss_pred             -CChhHhhC----------------------------------------------------CCCCCEEECCCCcCe-ecC
Confidence             33322322                                                    334899999999998 788


Q ss_pred             hhhccCCCCCEEeCcCceecccCCccccC------CCCCCEEECCCCcCc--ccCcccccCCCCCCEEeccCCc
Q 039564          313 TSIANLKGLQVLSLANNNLEGHIPSCFGD------LTKLESLDLSNNWFS--GQIPQQLTGLTFLEFFNVSHNN  378 (485)
Q Consensus       313 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~l~~N~  378 (485)
                      ..+..+++|++|++++|++++..+..|..      ...|+.|++++|.+.  +..|..|..++.|+.+++++|+
T Consensus       258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            88999999999999999999777776654      367899999999887  5778889999999999999885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.5e-31  Score=279.45  Aligned_cols=370  Identities=18%  Similarity=0.156  Sum_probs=262.6

Q ss_pred             CCCCCCCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc
Q 039564            1 RSCNLFEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF   79 (485)
Q Consensus         1 ~~n~l~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~   79 (485)
                      ++|+|..+|+ +|+++++|++|+|++|++++..+..|.  ++++|++|++++|+++++.+.  .+..+..|++|++++|.
T Consensus        84 s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~--~L~~L~~L~Ls~N~l~~l~~~--~~~~L~~L~~L~Ls~N~  159 (635)
T 4g8a_A           84 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNL  159 (635)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT--TCTTCCEEECTTSCCCCSTTC--CCTTCTTCCEEECCSSC
T ss_pred             CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc--CCCCCCEEECCCCcCCCCChh--hhhcCcccCeeccccCc
Confidence            4788977765 799999999999999999966667788  899999999999999987654  44444555999999999


Q ss_pred             ccccC-CCC---CCCCcEEEccCCcccccCChhhcCCCCCC----EEEcccCccccc-----------------------
Q 039564           80 LQGPI-PAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLY----ILDLSDNNLSGE-----------------------  128 (485)
Q Consensus        80 l~~~~-~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~L~~n~l~~~-----------------------  128 (485)
                      +++.. |..   +++|++|++++|.+++..+..|..+.+++    .++++.|.+...                       
T Consensus       160 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~  239 (635)
T 4g8a_A          160 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN  239 (635)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHH
T ss_pred             cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccccccc
Confidence            98643 333   89999999999999877676654433221    233333322100                       


Q ss_pred             ----------------------------------------------------------CCCccc---cCc----------
Q 039564          129 ----------------------------------------------------------LPRCLG---NFS----------  137 (485)
Q Consensus       129 ----------------------------------------------------------~p~~l~---~l~----------  137 (485)
                                                                                ++..+.   .+.          
T Consensus       240 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (635)
T 4g8a_A          240 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE  319 (635)
T ss_dssp             HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE
T ss_pred             ccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc
Confidence                                                                      000000   000          


Q ss_pred             --ccccCCCCccEEEccCCcccccCCc-------------------cccCCCCCcEEEccCCcccC--CcChhhhCCCCC
Q 039564          138 --DTFMNGSNLGIIDMSHNLLQGRIPK-------------------SLANCAVLEIIDLGNNQIID--TFPAWLGTLSEL  194 (485)
Q Consensus       138 --~~~~~l~~L~~L~Ls~n~i~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L  194 (485)
                        ..+.....++.|++.+|.+....+.                   ....+++|+.|++++|.+..  ..+..+..+.+|
T Consensus       320 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L  399 (635)
T 4g8a_A          320 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL  399 (635)
T ss_dssp             ECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred             cccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhh
Confidence              2334456677777777766532221                   23357889999999988753  345667778888


Q ss_pred             CEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCc
Q 039564          195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPH  274 (485)
Q Consensus       195 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (485)
                      +.+++..+.... .+..+  ..+++|+.+++..+......+...+..+..++.+++..+.........+       ....
T Consensus       400 ~~L~~~~~~~~~-~~~~~--~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~-------~~~~  469 (635)
T 4g8a_A          400 KYLDLSFNGVIT-MSSNF--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-------NGLS  469 (635)
T ss_dssp             CEEECCSCSEEE-ECSCC--TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT-------TTCT
T ss_pred             hhhhcccccccc-ccccc--cccccccchhhhhcccccccccccccccccccccccccccccccccccc-------ccch
Confidence            888888887763 34444  5677888888887776656665666777777776665443222111110       1112


Q ss_pred             ccceEEeeecCccc----ccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEEC
Q 039564          275 YYYSLTMSNKGQML----SYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL  350 (485)
Q Consensus       275 ~~~~l~~~~~~~~~----~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  350 (485)
                      .+..+.+..+....    .....++.|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence            34445554443221    12234678999999999999989999999999999999999999888999999999999999


Q ss_pred             CCCcCcccCcccccCC-CCCCEEeccCCcccccCC
Q 039564          351 SNNWFSGQIPQQLTGL-TFLEFFNVSHNNLTGPIP  384 (485)
Q Consensus       351 s~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p  384 (485)
                      ++|++++..|..+..+ ++|+.|++++|++++...
T Consensus       550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999988 689999999999997543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7e-33  Score=263.08  Aligned_cols=247  Identities=29%  Similarity=0.396  Sum_probs=200.2

Q ss_pred             ccEEEcCCCcccc--cCCCC---CCCCcEEEccC-CcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCC
Q 039564           70 EFTLDLSSNFLQG--PIPAP---PTKTRHYLVSK-NNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNG  143 (485)
Q Consensus        70 L~~L~l~~n~l~~--~~~~~---~~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l  143 (485)
                      +++|++++|.+++  .+|..   ++.|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..++.       +
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-------l  124 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-------I  124 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-------C
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-------C
Confidence            4667777777666  45443   67788888884 7787788888888888888888888888777865544       4


Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCC-CCCEEEeeccccccccCCccccCCCCCccE
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLS-ELDILVLQSNNFHGEIKEHKMECGFPKLRI  222 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  222 (485)
                      ++|++|++++|.+++.+|..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+.+.+|..+  ..++ |++
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~  201 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAF  201 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSE
T ss_pred             CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccE
Confidence            8888888888888888888888888899999988888878888888887 88899999888888888777  4555 888


Q ss_pred             EEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEc
Q 039564          223 VDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVIL  302 (485)
Q Consensus       223 L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~L  302 (485)
                      |++++|.+.+..|.. +..                                                    ++.|+.|++
T Consensus       202 L~Ls~N~l~~~~~~~-~~~----------------------------------------------------l~~L~~L~L  228 (313)
T 1ogq_A          202 VDLSRNMLEGDASVL-FGS----------------------------------------------------DKNTQKIHL  228 (313)
T ss_dssp             EECCSSEEEECCGGG-CCT----------------------------------------------------TSCCSEEEC
T ss_pred             EECcCCcccCcCCHH-Hhc----------------------------------------------------CCCCCEEEC
Confidence            999988887544432 222                                                    334888888


Q ss_pred             CCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          303 SSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       303 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      ++|.+++..|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+
T Consensus       229 ~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          229 AKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred             CCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence            88888866555 788899999999999999999999999999999999999999988886 888999999999998544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.4e-32  Score=269.13  Aligned_cols=336  Identities=22%  Similarity=0.232  Sum_probs=196.0

Q ss_pred             ChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCC------------ccEEEcC
Q 039564            9 PNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSG------------EFTLDLS   76 (485)
Q Consensus         9 p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l------------L~~L~l~   76 (485)
                      |+.+ ..++|++|++++|.+ +.+|++++  .+++|++|++++|.+++..|. ++..+..+            +++|+++
T Consensus         5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~--~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~   79 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAE--NVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELN   79 (454)
T ss_dssp             ---------------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECT
T ss_pred             cccc-ccccchhhhcccCch-hhCChhHh--cccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEec
Confidence            4444 368999999999999 69999999  999999999999999987775 55554432            5999999


Q ss_pred             CCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcc
Q 039564           77 SNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL  156 (485)
Q Consensus        77 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i  156 (485)
                      +|.+++. |..+++|++|++++|.+++ +|..   +++|++|++++|.++ .+|..          .++|++|++++|.+
T Consensus        80 ~~~l~~l-p~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----------~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           80 NLGLSSL-PELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----------PPLLEYLGVSNNQL  143 (454)
T ss_dssp             TSCCSCC-CSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----------CTTCCEEECCSSCC
T ss_pred             CCccccC-CCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----------CCCCCEEECcCCCC
Confidence            9999864 4467899999999999996 6653   367888888888776 33321          14555666666665


Q ss_pred             cccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCc----
Q 039564          157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG----  232 (485)
Q Consensus       157 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~----  232 (485)
                      ++ +| .|..+++|++|++++|.+++ +|..   .++|++|++++|.+.+ +| .+  ..+++|+.|++++|.+.+    
T Consensus       144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~--~~l~~L~~L~l~~N~l~~l~~~  213 (454)
T 1jl5_A          144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-EL--QNLPFLTAIYADNNSLKKLPDL  213 (454)
T ss_dssp             SS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CC--TTCTTCCEEECCSSCCSSCCCC
T ss_pred             CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cc--cCCCCCCEEECCCCcCCcCCCC
Confidence            53 44 35555556666665555543 2221   2355555555555543 33 22  344555555555554442    


Q ss_pred             ---------------cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccc
Q 039564          233 ---------------NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYIL  297 (485)
Q Consensus       233 ---------------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L  297 (485)
                                     .+|.  +..+++|+.++++++...           .++..+..+..+++..+.... .+..++.|
T Consensus       214 ~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~-----------~l~~~~~~L~~L~l~~N~l~~-l~~~~~~L  279 (454)
T 1jl5_A          214 PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLK-----------TLPDLPPSLEALNVRDNYLTD-LPELPQSL  279 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCS-----------SCCSCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred             cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCC-----------cccccccccCEEECCCCcccc-cCcccCcC
Confidence                           3442  444455555544433211           112233456666666655443 23345677


Q ss_pred             cEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564          298 TAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       298 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      +.|++++|.+++ +|.   -.++|+.|++++|++++ ++.   -.++|+.|++++|++++ +|..   +++|+.|++++|
T Consensus       280 ~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N  347 (454)
T 1jl5_A          280 TFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN  347 (454)
T ss_dssp             CEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred             CEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence            888888887775 221   12578888888888774 222   12589999999999995 6654   589999999999


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCC
Q 039564          378 NLTGPIPEANQFPTFDSSSFDGNSGLC  404 (485)
Q Consensus       378 ~l~~~~p~~~~~~~l~~~~~~~n~~lc  404 (485)
                      ++++ +|.  .+..++.+++.+|...+
T Consensus       348 ~l~~-lp~--~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          348 HLAE-VPE--LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CCSC-CCC--CCTTCCEEECCSSCCSS
T ss_pred             cccc-ccc--hhhhccEEECCCCCCCc
Confidence            9985 565  56788888898887665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=1e-30  Score=260.72  Aligned_cols=296  Identities=19%  Similarity=0.168  Sum_probs=245.9

Q ss_pred             CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      ++|.+..+| .++.+++|++|++++|.+++ +|  ++  .+++|++|++++|.+++.    .+..+..+ ++|++++|.+
T Consensus        50 s~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~--~l~~L~~L~Ls~N~l~~~----~~~~l~~L-~~L~L~~N~l  118 (457)
T 3bz5_A           50 HNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LS--QNTNLTYLACDSNKLTNL----DVTPLTKL-TYLNCDTNKL  118 (457)
T ss_dssp             CSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEECCSSCCSCC----CCTTCTTC-CEEECCSSCC
T ss_pred             cCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cc--cCCCCCEEECcCCCCcee----ecCCCCcC-CEEECCCCcC
Confidence            468887787 79999999999999999996 44  77  899999999999999986    24445454 9999999999


Q ss_pred             cccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564           81 QGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI  160 (485)
Q Consensus        81 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~  160 (485)
                      ++.....+++|++|++++|.+++. +  ++.+++|++|++++|...+.++         +..+++|++|++++|.+++ +
T Consensus       119 ~~l~~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~ls~n~l~~-l  185 (457)
T 3bz5_A          119 TKLDVSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---------VTPQTQLTTLDCSFNKITE-L  185 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---------CTTCTTCCEEECCSSCCCC-C
T ss_pred             CeecCCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---------cccCCcCCEEECCCCccce-e
Confidence            986544499999999999999964 3  8899999999999996554542         3456999999999999996 4


Q ss_pred             CccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564          161 PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ  240 (485)
Q Consensus       161 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  240 (485)
                      |  +..+++|++|++++|.+++.   .++.+++|++|++++|++.+ +|  +  ..+++|+.|++++|.+++ +|   ..
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~--~~l~~L~~L~l~~N~l~~-~~---~~  251 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--V--TPLTQLTYFDCSVNPLTE-LD---VS  251 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C--TTCTTCSEEECCSSCCSC-CC---CT
T ss_pred             c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--c--cccCCCCEEEeeCCcCCC-cC---HH
Confidence            4  88999999999999999876   37889999999999999996 55  4  678999999999999985 44   23


Q ss_pred             ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCC
Q 039564          241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG  320 (485)
Q Consensus       241 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  320 (485)
                      .+.+|+.+++..                                          ..++.+++++|.+.+.+|  ++.+++
T Consensus       252 ~l~~L~~L~l~~------------------------------------------n~L~~L~l~~n~~~~~~~--~~~l~~  287 (457)
T 3bz5_A          252 TLSKLTTLHCIQ------------------------------------------TDLLEIDLTHNTQLIYFQ--AEGCRK  287 (457)
T ss_dssp             TCTTCCEEECTT------------------------------------------CCCSCCCCTTCTTCCEEE--CTTCTT
T ss_pred             HCCCCCEEeccC------------------------------------------CCCCEEECCCCccCCccc--cccccc
Confidence            445555544321                                          238889999999888877  468899


Q ss_pred             CCEEeCcCceecccCCc--------cccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          321 LQVLSLANNNLEGHIPS--------CFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       321 L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      |+.|++++|...+.+|.        .+..+++|+.|++++|++++. +  +..+++|+.|++++|++++
T Consensus       288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence            99999999987666654        256778999999999999974 3  8899999999999999987

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=6.4e-31  Score=252.12  Aligned_cols=283  Identities=18%  Similarity=0.177  Sum_probs=209.5

Q ss_pred             CCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 039564           43 NFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILD  119 (485)
Q Consensus        43 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  119 (485)
                      +++.++++++.++.+...  +   .+.+++|++++|.+++..+..   +++|++|++++|.+++..|..|+++++|++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~--~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE--I---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC--C---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCccccCCC--C---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            699999999999875432  3   245599999999998776643   78899999999999887788888999999999


Q ss_pred             cccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccC--CcChhhhCCCCCCEE
Q 039564          120 LSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID--TFPAWLGTLSELDIL  197 (485)
Q Consensus       120 L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L  197 (485)
                      +++|.++ .+|..+.         ++|++|++++|.+++..+..|..+++|++|++++|.+..  ..+..+..+ +|++|
T Consensus       109 L~~n~l~-~l~~~~~---------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L  177 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP---------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL  177 (332)
T ss_dssp             CCSSCCC-SCCSSCC---------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred             CCCCcCC-ccCcccc---------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence            9999887 6665331         688899999998886666778888889999999888853  666777777 88888


Q ss_pred             EeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccc
Q 039564          198 VLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYY  277 (485)
Q Consensus       198 ~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (485)
                      ++++|.+.+ +|..+    .++|++|++++|.+.+..+. .+..                                    
T Consensus       178 ~l~~n~l~~-l~~~~----~~~L~~L~l~~n~i~~~~~~-~l~~------------------------------------  215 (332)
T 2ft3_A          178 RISEAKLTG-IPKDL----PETLNELHLDHNKIQAIELE-DLLR------------------------------------  215 (332)
T ss_dssp             BCCSSBCSS-CCSSS----CSSCSCCBCCSSCCCCCCTT-SSTT------------------------------------
T ss_pred             ECcCCCCCc-cCccc----cCCCCEEECCCCcCCccCHH-HhcC------------------------------------
Confidence            888888874 55544    26788888888888743222 2222                                    


Q ss_pred             eEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcc
Q 039564          278 SLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSG  357 (485)
Q Consensus       278 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  357 (485)
                                      ++.|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++
T Consensus       216 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          216 ----------------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             ----------------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             ----------------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence                            233777888888888777777888888888888888888 777778888888888888888886


Q ss_pred             cCcccccC------CCCCCEEeccCCccc--ccCCCC-CCCCCCCCCCCCCC
Q 039564          358 QIPQQLTG------LTFLEFFNVSHNNLT--GPIPEA-NQFPTFDSSSFDGN  400 (485)
Q Consensus       358 ~~p~~~~~------l~~L~~L~l~~N~l~--~~~p~~-~~~~~l~~~~~~~n  400 (485)
                      ..+..|..      .+.|+.+++++|++.  +..|.. ..++.+..+.+.+|
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            66666654      356788888888876  222221 23444455555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.7e-30  Score=245.35  Aligned_cols=264  Identities=19%  Similarity=0.195  Sum_probs=142.4

Q ss_pred             CCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 039564           43 NFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILD  119 (485)
Q Consensus        43 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  119 (485)
                      +++.++++++.++.+...  +   .+.+++|++++|.+++..+..   +++|++|++++|.+++..|..|+++++|++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~~--~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKD--L---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCCSCCCS--C---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCccccCcc--C---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            567777777766654221  1   233466666666666554432   56666666666666655566666666666666


Q ss_pred             cccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccC--CcChhhhCCCCCCEE
Q 039564          120 LSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID--TFPAWLGTLSELDIL  197 (485)
Q Consensus       120 L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L  197 (485)
                      +++|.++ .+|..+.         ++|++|++++|.+++..+..|..+++|++|++++|.+..  ..+..+..+++|++|
T Consensus       107 Ls~n~l~-~l~~~~~---------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP---------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             CCSSCCS-BCCSSCC---------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCCCcCC-ccChhhc---------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence            6666665 4443221         456666666666665555555666666666666665532  444555566666666


Q ss_pred             EeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccc
Q 039564          198 VLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYY  277 (485)
Q Consensus       198 ~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (485)
                      ++++|.+. .+|...    .++|+.|++++|.+.+..+.. +..                                    
T Consensus       177 ~l~~n~l~-~l~~~~----~~~L~~L~l~~n~l~~~~~~~-~~~------------------------------------  214 (330)
T 1xku_A          177 RIADTNIT-TIPQGL----PPSLTELHLDGNKITKVDAAS-LKG------------------------------------  214 (330)
T ss_dssp             ECCSSCCC-SCCSSC----CTTCSEEECTTSCCCEECTGG-GTT------------------------------------
T ss_pred             ECCCCccc-cCCccc----cccCCEEECCCCcCCccCHHH-hcC------------------------------------
Confidence            66666555 333332    145555666555555322211 111                                    


Q ss_pred             eEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcc
Q 039564          278 SLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSG  357 (485)
Q Consensus       278 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  357 (485)
                                      ++.|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++
T Consensus       215 ----------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          215 ----------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             ----------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             ----------------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence                            122555555555555444445555555555555555555 455555555555555555555554


Q ss_pred             cCcccccC------CCCCCEEeccCCccc
Q 039564          358 QIPQQLTG------LTFLEFFNVSHNNLT  380 (485)
Q Consensus       358 ~~p~~~~~------l~~L~~L~l~~N~l~  380 (485)
                      ..+..|..      .+.++.+++++|++.
T Consensus       278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cChhhcCCcccccccccccceEeecCccc
Confidence            44444432      244555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=7.5e-29  Score=247.91  Aligned_cols=250  Identities=20%  Similarity=0.171  Sum_probs=213.7

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      ..++++++.++......++++++|++++|.+++..+..|.++++|++|+|++|.+++..|.       .|.++++|++|+
T Consensus        57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-------~~~~l~~L~~L~  129 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG-------AFNGLASLNTLE  129 (452)
T ss_dssp             CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEEE
T ss_pred             cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-------hccCcccCCEEE
Confidence            6788888888865555578899999999999988889999999999999999999865554       455568999999


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF  230 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  230 (485)
                      |++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+ ..+++|++|++++|.+
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCTTCCEEECTTSCC
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc-cCCCCCCEEECCCCcc
Confidence            999999977777899999999999999999887778899999999999999655556655422 6889999999999998


Q ss_pred             CccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc
Q 039564          231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE  310 (485)
Q Consensus       231 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  310 (485)
                      + .+|.  +.                                                    .++.|+.|++++|.+++.
T Consensus       209 ~-~~~~--~~----------------------------------------------------~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          209 K-DMPN--LT----------------------------------------------------PLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             S-SCCC--CT----------------------------------------------------TCTTCCEEECTTSCCSEE
T ss_pred             c-cccc--cc----------------------------------------------------ccccccEEECcCCcCccc
Confidence            8 4442  11                                                    134599999999999988


Q ss_pred             CchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564          311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI  383 (485)
Q Consensus       311 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  383 (485)
                      .|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            8999999999999999999999888999999999999999999999877788899999999999999987643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=2.6e-29  Score=238.10  Aligned_cols=249  Identities=22%  Similarity=0.242  Sum_probs=169.3

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccccc--CCCccccCcccccCCCCccE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE--LPRCLGNFSDTFMNGSNLGI  148 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~~~~~l~~L~~  148 (485)
                      +.++++++.++......++++++|++++|.++...+..|.++++|++|++++|.++..  .|.       .+..+++|++
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------~~~~~~~L~~   82 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-------SDFGTTSLKY   82 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-------HHHSCSCCCE
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc-------ccccccccCE
Confidence            4555555555544333355666666666666643334466777777777777766521  122       2223467777


Q ss_pred             EEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccC
Q 039564          149 IDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN  227 (485)
Q Consensus       149 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~  227 (485)
                      |++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+  ..+++|++|++++
T Consensus        83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~  159 (306)
T 2z66_A           83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAG  159 (306)
T ss_dssp             EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTT
T ss_pred             EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCC
Confidence            777777776 455567777777777777777766554 466777777777777777766555555  5667777777777


Q ss_pred             ccCCc-cCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCc
Q 039564          228 NSFTG-NLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNG  306 (485)
Q Consensus       228 n~l~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~  306 (485)
                      |.+.+ ..|.. +..                                                    ++.|+.|++++|.
T Consensus       160 n~l~~~~~~~~-~~~----------------------------------------------------l~~L~~L~Ls~n~  186 (306)
T 2z66_A          160 NSFQENFLPDI-FTE----------------------------------------------------LRNLTFLDLSQCQ  186 (306)
T ss_dssp             CEEGGGEECSC-CTT----------------------------------------------------CTTCCEEECTTSC
T ss_pred             CccccccchhH-Hhh----------------------------------------------------CcCCCEEECCCCC
Confidence            77653 12221 111                                                    2347777777777


Q ss_pred             CcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCC-CCCEEeccCCccccc
Q 039564          307 FHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT-FLEFFNVSHNNLTGP  382 (485)
Q Consensus       307 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~  382 (485)
                      +++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++.
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            7766677788888888888888888877777788888888888888888888888888874 888888888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=9e-29  Score=246.47  Aligned_cols=250  Identities=21%  Similarity=0.172  Sum_probs=209.9

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      ..++.+++.++..+....++++.|++++|.+.+..+..|.++++|++|+|++|.+++..+       ..|.++++|++|+
T Consensus        46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-------~~~~~l~~L~~L~  118 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-------GAFNGLANLNTLE  118 (440)
T ss_dssp             CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-------GGGTTCSSCCEEE
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-------hhccCCccCCEEE
Confidence            677888887776555557888889999999988778889999999999999999884444       3455668999999


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF  230 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  230 (485)
                      |++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+ ..+++|++|++++|.+
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCSSCCEEECTTSCC
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh-hcccccCeecCCCCcC
Confidence            999999977777899999999999999999888788899999999999998665556555322 6789999999999998


Q ss_pred             CccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc
Q 039564          231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE  310 (485)
Q Consensus       231 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  310 (485)
                      + .+|.  +..                                                    ++.|+.|++++|.+++.
T Consensus       198 ~-~~~~--~~~----------------------------------------------------l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          198 R-EIPN--LTP----------------------------------------------------LIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             S-SCCC--CTT----------------------------------------------------CSSCCEEECTTSCCCEE
T ss_pred             c-cccc--cCC----------------------------------------------------CcccCEEECCCCccCcc
Confidence            7 4542  111                                                    34489999999999988


Q ss_pred             CchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564          311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI  383 (485)
Q Consensus       311 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  383 (485)
                      .|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            8999999999999999999999888999999999999999999999877888899999999999999998643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.8e-29  Score=244.11  Aligned_cols=251  Identities=17%  Similarity=0.167  Sum_probs=136.5

Q ss_pred             cEEEcCCCcccccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCcc
Q 039564           71 FTLDLSSNFLQGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLG  147 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~  147 (485)
                      ++|++++|.+++..+..   +++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.      ..|..+++|+
T Consensus        55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~------~~~~~l~~L~  127 (353)
T 2z80_A           55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSS------SWFKPLSSLT  127 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCH------HHHTTCTTCS
T ss_pred             cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCH------hHhCCCccCC
Confidence            44444444444333311   444555555555555444455555555555555555555 3332      1123345555


Q ss_pred             EEEccCCcccccCC-ccccCCCCCcEEEccCC-cccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEc
Q 039564          148 IIDMSHNLLQGRIP-KSLANCAVLEIIDLGNN-QIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDL  225 (485)
Q Consensus       148 ~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l  225 (485)
                      +|++++|.+++..+ ..|..+++|++|++++| .+....+..|..+++|++|++++|.+.+..|..+  ..+++|++|++
T Consensus       128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l  205 (353)
T 2z80_A          128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLIL  205 (353)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEE
T ss_pred             EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecC
Confidence            55555555553222 24555556666666555 3444444555555666666666665555445544  45556666666


Q ss_pred             cCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCC
Q 039564          226 SNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN  305 (485)
Q Consensus       226 ~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n  305 (485)
                      ++|.+. .++..++..                                                    ++.|+.|++++|
T Consensus       206 ~~n~l~-~~~~~~~~~----------------------------------------------------~~~L~~L~L~~n  232 (353)
T 2z80_A          206 HMKQHI-LLLEIFVDV----------------------------------------------------TSSVECLELRDT  232 (353)
T ss_dssp             ECSCST-THHHHHHHH----------------------------------------------------TTTEEEEEEESC
T ss_pred             CCCccc-cchhhhhhh----------------------------------------------------cccccEEECCCC
Confidence            665554 333322221                                                    122555555555


Q ss_pred             cCcccCchhh---ccCCCCCEEeCcCceecc----cCCccccCCCCCCEEECCCCcCcccCccc-ccCCCCCCEEeccCC
Q 039564          306 GFHGEIPTSI---ANLKGLQVLSLANNNLEG----HIPSCFGDLTKLESLDLSNNWFSGQIPQQ-LTGLTFLEFFNVSHN  377 (485)
Q Consensus       306 ~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N  377 (485)
                      .+++..+..+   ...+.++.++++++.+++    .+|..+..+++|+.|++++|+++ .+|.. |..+++|+.|++++|
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence            5554333222   234556666776666654    35667777888888888888888 44443 577888888888888


Q ss_pred             cccccCC
Q 039564          378 NLTGPIP  384 (485)
Q Consensus       378 ~l~~~~p  384 (485)
                      ++++..|
T Consensus       312 ~~~~~~~  318 (353)
T 2z80_A          312 PWDCSCP  318 (353)
T ss_dssp             CBCCCHH
T ss_pred             CccCcCC
Confidence            8876554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=9.9e-29  Score=246.18  Aligned_cols=253  Identities=22%  Similarity=0.241  Sum_probs=210.5

Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564           90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV  169 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  169 (485)
                      ....++..+..++ .+|..+.  ++++.|+|++|.+++..+.       .|..+++|++|+|++|.+++..+..|.++++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~-------~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~  113 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVN-------SFKHLRHLEILQLSRNHIRTIEIGAFNGLAN  113 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTT-------TTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHH-------HhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence            4567888888887 6776553  6889999999998855443       3455689999999999999877788999999


Q ss_pred             CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564          170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN  249 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~  249 (485)
                      |++|+|++|.++...+..|..+++|++|++++|.+....+..+  ..+++|+.|++++|...+.++...|..        
T Consensus       114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~--------  183 (440)
T 3zyj_A          114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG--------  183 (440)
T ss_dssp             CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------
T ss_pred             CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc--------
Confidence            9999999999988777788999999999999999885555455  678999999999865444555443333        


Q ss_pred             ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCc
Q 039564          250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANN  329 (485)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  329 (485)
                                                                  +++|+.|++++|.++ .+| .+..+++|++|+|++|
T Consensus       184 --------------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          184 --------------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN  217 (440)
T ss_dssp             --------------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTS
T ss_pred             --------------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCC
Confidence                                                        334899999999998 555 4788999999999999


Q ss_pred             eecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564          330 NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      ++++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+.. ..++.+..+++.+||+.|+|.+
T Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            999888999999999999999999999999999999999999999999999766544 4577888999999999999965

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.2e-28  Score=246.52  Aligned_cols=253  Identities=21%  Similarity=0.232  Sum_probs=210.3

Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564           90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV  169 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  169 (485)
                      ....++.++..++ .+|..+.  +++++|+|++|.+++..|..       |..+++|++|++++|.+++..+..|.++++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~-------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  124 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADT-------FRHLHHLEVLQLGRNSIRQIEVGAFNGLAS  124 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT-------TTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHH-------cCCCCCCCEEECCCCccCCcChhhccCccc
Confidence            4567888888887 5676553  68899999999998655544       455689999999999999888888999999


Q ss_pred             CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564          170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN  249 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~  249 (485)
                      |++|+|++|.++...+..|..+++|++|++++|.+....+..+  ..+++|+.|++++|...+.++...|..        
T Consensus       125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~--------  194 (452)
T 3zyi_A          125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG--------  194 (452)
T ss_dssp             CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------
T ss_pred             CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------
Confidence            9999999999988888888899999999999999885544455  678999999999855444555443332        


Q ss_pred             ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCc
Q 039564          250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANN  329 (485)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  329 (485)
                                                                  ++.|+.|++++|.+.+ +| .+..+++|++|+|++|
T Consensus       195 --------------------------------------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          195 --------------------------------------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGN  228 (452)
T ss_dssp             --------------------------------------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTS
T ss_pred             --------------------------------------------CCCCCEEECCCCcccc-cc-cccccccccEEECcCC
Confidence                                                        3348999999999984 44 4788999999999999


Q ss_pred             eecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564          330 NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       330 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      ++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. ..++.+..+++.+||+.|+|.+
T Consensus       229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            999999999999999999999999999999999999999999999999999765544 4577888899999999999975

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=5.1e-29  Score=240.95  Aligned_cols=282  Identities=20%  Similarity=0.203  Sum_probs=214.4

Q ss_pred             CCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC---CCC
Q 039564           14 QQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP---PTK   90 (485)
Q Consensus        14 ~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~---~~~   90 (485)
                      .|+.....+++++.++ .+|..+.    ++|++|++++|.++++.+. .+.++ ..|++|++++|.+++..+..   +++
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~----~~L~~L~l~~n~i~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT----EAVKSLDLSNNRITYISNS-DLQRC-VNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC----TTCCEEECTTSCCCEECTT-TTTTC-TTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc----ccCcEEECCCCcCcccCHH-HhccC-CCCCEEECCCCccCccCHhhcCCCCC
Confidence            3566677888888888 7777654    4788999999988876553 34444 44489999999888776653   788


Q ss_pred             CcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC-cccccCCccccCCCC
Q 039564           91 TRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN-LLQGRIPKSLANCAV  169 (485)
Q Consensus        91 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~  169 (485)
                      |++|++++|.+++..+..|+++++|++|++++|.++ .+|..     ..|..+++|++|++++| .+.+..+..|..+++
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  175 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGET-----SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF  175 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSS-----CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCch-----hhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence            999999999998655556889999999999999988 55530     13455689999999998 577666788999999


Q ss_pred             CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564          170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN  249 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~  249 (485)
                      |++|++++|.+.+..|..+..+++|++|++++|.+. .++..+. ..+++|+.|++++|.+++..+.. +...       
T Consensus       176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~-l~~~-------  245 (353)
T 2z80_A          176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV-DVTSSVECLELRDTDLDTFHFSE-LSTG-------  245 (353)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH-HHTTTEEEEEEESCBCTTCCCC-------------
T ss_pred             CCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhh-hhcccccEEECCCCccccccccc-cccc-------
Confidence            999999999998888889999999999999999986 4444332 45789999999999988433221 1100       


Q ss_pred             ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcc----cCchhhccCCCCCEEe
Q 039564          250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG----EIPTSIANLKGLQVLS  325 (485)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~  325 (485)
                                                                .....++.++++++.+.+    .+|..+..+++|++|+
T Consensus       246 ------------------------------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~  283 (353)
T 2z80_A          246 ------------------------------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE  283 (353)
T ss_dssp             -------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred             ------------------------------------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence                                                      012236667777776664    4678899999999999


Q ss_pred             CcCceecccCCccccCCCCCCEEECCCCcCcccCc
Q 039564          326 LANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIP  360 (485)
Q Consensus       326 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  360 (485)
                      +++|++++..+..|..+++|+.|++++|.+.+..|
T Consensus       284 Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            99999994444446899999999999999997544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.6e-28  Score=234.48  Aligned_cols=226  Identities=19%  Similarity=0.210  Sum_probs=192.3

Q ss_pred             CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCC
Q 039564           88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC  167 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  167 (485)
                      ...+++|++++|.+. .+|..+.++++|++|++++|.++ .+|..++.       +++|++|++++|.++ .+|..+..+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~-------l~~L~~L~Ls~n~l~-~lp~~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-------FAGLETLTLARNPLR-ALPASIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGG-------GTTCSEEEEESCCCC-CCCGGGGGC
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhc-------cCCCCEEECCCCccc-cCcHHHhcC
Confidence            467888888888887 67877888899999999999888 78866655       478999999999988 778888889


Q ss_pred             CCCcEEEccCCcccCCcChhhhC---------CCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhh
Q 039564          168 AVLEIIDLGNNQIIDTFPAWLGT---------LSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKY  238 (485)
Q Consensus       168 ~~L~~L~Ls~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  238 (485)
                      ++|++|++++|.+.+.+|..+..         +++|++|++++|.+. .+|..+  ..+++|++|++++|.+. .+|.. 
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~-~l~~~-  224 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLS-ALGPA-  224 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCC-CCCGG-
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCC-cCchh-
Confidence            99999999988887877776654         899999999999988 777776  67889999999999988 45543 


Q ss_pred             hcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccC
Q 039564          239 FQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANL  318 (485)
Q Consensus       239 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  318 (485)
                      +..                                                    ++.|+.|++++|.+.+.+|..+..+
T Consensus       225 l~~----------------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          225 IHH----------------------------------------------------LPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             GGG----------------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             hcc----------------------------------------------------CCCCCEEECcCCcchhhhHHHhcCC
Confidence            222                                                    3348899999999998999999999


Q ss_pred             CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccc
Q 039564          319 KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLT  380 (485)
Q Consensus       319 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~  380 (485)
                      ++|++|+|++|++.+.+|..+..+++|+.|++++|.+.+.+|+.+.++++|+.+++..+.+.
T Consensus       253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999899999999999999999999999999999999999999999987765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=5.4e-29  Score=233.41  Aligned_cols=226  Identities=21%  Similarity=0.216  Sum_probs=145.4

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      ++++++++.++......++++++|++++|.+++..+..|..+++|++|++++|.+++..|..       |..+++|++|+
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~   86 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-------FTGLALLEQLD   86 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------TTTCTTCCEEE
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-------cCCccCCCEEe
Confidence            45666666666443334566777777777777655666777777777777777777544533       33446777777


Q ss_pred             ccCCc-ccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc
Q 039564          151 MSHNL-LQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS  229 (485)
Q Consensus       151 Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  229 (485)
                      +++|. ++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+  ..+++|++|++++|.
T Consensus        87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNR  164 (285)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSC
T ss_pred             CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCc
Confidence            77776 665556677777777777777777766666667777777777777777664333334  455666666666665


Q ss_pred             CCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcc
Q 039564          230 FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG  309 (485)
Q Consensus       230 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  309 (485)
                      ++                                                                             +
T Consensus       165 l~-----------------------------------------------------------------------------~  167 (285)
T 1ozn_A          165 IS-----------------------------------------------------------------------------S  167 (285)
T ss_dssp             CC-----------------------------------------------------------------------------E
T ss_pred             cc-----------------------------------------------------------------------------c
Confidence            54                                                                             2


Q ss_pred             cCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccccc
Q 039564          310 EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP  382 (485)
Q Consensus       310 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  382 (485)
                      ..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            2333455566666666666666666666666666666666666666655555566666666666666666643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.4e-28  Score=233.18  Aligned_cols=278  Identities=22%  Similarity=0.232  Sum_probs=172.3

Q ss_pred             CEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEccC
Q 039564           19 KALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSK   98 (485)
Q Consensus        19 ~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l~~   98 (485)
                      +.++.+++.++ .+|..+.    ++|++|++++|.++.+.+  .++.....|++|++++|.++..               
T Consensus        10 ~~l~c~~~~l~-~ip~~~~----~~l~~L~L~~n~l~~i~~--~~~~~l~~L~~L~L~~n~l~~~---------------   67 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP----SSATRLELESNKLQSLPH--GVFDKLTQLTKLSLSSNGLSFK---------------   67 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC----TTCCEEECCSSCCCCCCT--TTTTTCTTCSEEECCSSCCCEE---------------
T ss_pred             CEEEcCCCCcc-cCCCCCC----CCCCEEECCCCccCccCH--hHhhccccCCEEECCCCccCcc---------------
Confidence            46777777776 5665432    467777777777765433  2333333336666666655421               


Q ss_pred             CcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCC-ccccCCCCCcEEEccC
Q 039564           99 NNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP-KSLANCAVLEIIDLGN  177 (485)
Q Consensus        99 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~  177 (485)
                          +..+..+..+++|++|++++|.++ .+|..       +..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus        68 ----~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  135 (306)
T 2z66_A           68 ----GCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  135 (306)
T ss_dssp             ----EEEEHHHHSCSCCCEEECCSCSEE-EEEEE-------EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred             ----cCcccccccccccCEEECCCCccc-cChhh-------cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC
Confidence                122445556666666666666665 34432       2334666677777666664433 4566667777777777


Q ss_pred             CcccCCcChhhhCCCCCCEEEeecccccc-ccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhh
Q 039564          178 NQIIDTFPAWLGTLSELDILVLQSNNFHG-EIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYM  256 (485)
Q Consensus       178 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~  256 (485)
                      |.+.+..+..+..+++|++|++++|.+.+ ..|..+  ..+++|++|++++|.+.+..|.. +..               
T Consensus       136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~---------------  197 (306)
T 2z66_A          136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTA-FNS---------------  197 (306)
T ss_dssp             SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTT-TTT---------------
T ss_pred             CcCCccchhhcccCcCCCEEECCCCccccccchhHH--hhCcCCCEEECCCCCcCCcCHHH-hcC---------------
Confidence            77666666666667777777777777664 345555  56677777777777766332321 211               


Q ss_pred             hcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCC
Q 039564          257 RNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP  336 (485)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  336 (485)
                                                           ++.|+.|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus       198 -------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          198 -------------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             -------------------------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             -------------------------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence                                                 2337777777777776666677888889999999999888888


Q ss_pred             ccccCCC-CCCEEECCCCcCcccCc--ccccCCCCCCEEeccCCcccccCCC
Q 039564          337 SCFGDLT-KLESLDLSNNWFSGQIP--QQLTGLTFLEFFNVSHNNLTGPIPE  385 (485)
Q Consensus       337 ~~~~~l~-~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~  385 (485)
                      ..+..++ +|+.|++++|.+++.-+  .....+...+.+.+..+.+.+..|.
T Consensus       241 ~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          241 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            8888874 89999999998875421  1112223344445556666665554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=5.7e-31  Score=264.31  Aligned_cols=341  Identities=18%  Similarity=0.129  Sum_probs=248.0

Q ss_pred             hhhCCCCCCEEECCCCcCCC----CCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCC----CccEEEcCCCcccc
Q 039564           11 FLKQQKHLKALDLSSNKLHG----NIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSS----GEFTLDLSSNFLQG   82 (485)
Q Consensus        11 ~~~~l~~L~~L~Ls~n~~~~----~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~----lL~~L~l~~n~l~~   82 (485)
                      .+..+++|++|++++|.+.+    .++..+.  .+++|++|++++|.++..... .++....    .|++|++++|.++.
T Consensus        23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~   99 (461)
T 1z7x_W           23 LLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVH-CVLQGLQTPSCKIQKLSLQNCCLTG   99 (461)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHH-HHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             HHhhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHH-HHHHHHhhCCCceeEEEccCCCCCH
Confidence            47889999999999999885    3455666  789999999999998753221 2222222    45999999999884


Q ss_pred             c----CC---CCCCCCcEEEccCCcccccCChhhc-----CCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           83 P----IP---APPTKTRHYLVSKNNLTGEIPSWIC-----NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        83 ~----~~---~~~~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      .    ++   ..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..+..+.   ..+..+++|++|+
T Consensus       100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~---~~l~~~~~L~~L~  176 (461)
T 1z7x_W          100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA---SVLRAKPDFKELT  176 (461)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH---HHHHHCTTCCEEE
T ss_pred             HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH---HHHhhCCCCCEEE
Confidence            2    22   2378999999999999865444433     356899999999998854322222   3345568999999


Q ss_pred             ccCCcccccCCcccc-----CCCCCcEEEccCCcccCC----cChhhhCCCCCCEEEeeccccccccCCcc---ccCCCC
Q 039564          151 MSHNLLQGRIPKSLA-----NCAVLEIIDLGNNQIIDT----FPAWLGTLSELDILVLQSNNFHGEIKEHK---MECGFP  218 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~l~  218 (485)
                      +++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.....+   ....++
T Consensus       177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~  256 (461)
T 1z7x_W          177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS  256 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence            999999865554443     366999999999999764    46778889999999999998875321111   113578


Q ss_pred             CccEEEccCccCCcc----CChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCccccccccc
Q 039564          219 KLRIVDLSNNSFTGN----LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIP  294 (485)
Q Consensus       219 ~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  294 (485)
                      +|++|++++|.+++.    ++. .+..+++|+.++++++..-......+                       ........
T Consensus       257 ~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l-----------------------~~~l~~~~  312 (461)
T 1z7x_W          257 RLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSLAGNELGDEGARLL-----------------------CETLLEPG  312 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHH-HHHHCTTCCEEECTTCCCHHHHHHHH-----------------------HHHHTSTT
T ss_pred             CceEEECcCCCCCHHHHHHHHH-HHhhCCCcceEECCCCCCchHHHHHH-----------------------HHHhccCC
Confidence            999999999998743    232 25567888888877653211100000                       00001113


Q ss_pred             ccccEEEcCCCcCccc----CchhhccCCCCCEEeCcCceecccCCccccC-----CCCCCEEECCCCcCcc----cCcc
Q 039564          295 YILTAVILSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGHIPSCFGD-----LTKLESLDLSNNWFSG----QIPQ  361 (485)
Q Consensus       295 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~  361 (485)
                      +.|+.|++++|.+++.    ++..+..+++|++|++++|++++..+..+..     .++|+.|++++|.+++    .+|.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            4699999999999865    4667778899999999999998665555543     6799999999999986    6788


Q ss_pred             cccCCCCCCEEeccCCcccc
Q 039564          362 QLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       362 ~~~~l~~L~~L~l~~N~l~~  381 (485)
                      .+..+++|+.|++++|++++
T Consensus       393 ~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhCCCccEEECCCCCCCH
Confidence            88889999999999999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=5.6e-28  Score=230.69  Aligned_cols=233  Identities=19%  Similarity=0.200  Sum_probs=147.6

Q ss_pred             CCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEE
Q 039564           15 QKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHY   94 (485)
Q Consensus        15 l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L   94 (485)
                      .+++++|+|++|.+. .+|..++  .+++|++|++++|.++. .|. .+..                      +++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~--~l~~L~~L~L~~n~l~~-lp~-~~~~----------------------l~~L~~L  132 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAF--RLSHLQHMTIDAAGLME-LPD-TMQQ----------------------FAGLETL  132 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGG--GGTTCSEEEEESSCCCC-CCS-CGGG----------------------GTTCSEE
T ss_pred             ccceeEEEccCCCch-hcChhhh--hCCCCCEEECCCCCccc-hhH-HHhc----------------------cCCCCEE
Confidence            366777777777766 6666666  56677777777776663 222 2222                      3445555


Q ss_pred             EccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccC--cccccCCCCccEEEccCCcccccCCccccCCCCCcE
Q 039564           95 LVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNF--SDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI  172 (485)
Q Consensus        95 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  172 (485)
                      ++++|.++ .+|..|+++++|++|++++|.+.+.+|..++..  ...|..+++|++|++++|.++ .+|..+..+++|++
T Consensus       133 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~  210 (328)
T 4fcg_A          133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS  210 (328)
T ss_dssp             EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred             ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence            55555555 678888889999999999988887888765431  122333455666666666655 55555555666666


Q ss_pred             EEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccc
Q 039564          173 IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQ  252 (485)
Q Consensus       173 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~  252 (485)
                      |++++|.+++ +|..+..+++|++|++++|.+.+.+|..+  ..+++|++                              
T Consensus       211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~------------------------------  257 (328)
T 4fcg_A          211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF--GGRAPLKR------------------------------  257 (328)
T ss_dssp             EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCE------------------------------
T ss_pred             EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHh--cCCCCCCE------------------------------
Confidence            6666665543 33345555555555555555555555444  34444444                              


Q ss_pred             hhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceec
Q 039564          253 LRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE  332 (485)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  332 (485)
                                                                     |++++|.+.+.+|..+..+++|++|+|++|++.
T Consensus       258 -----------------------------------------------L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          258 -----------------------------------------------LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             -----------------------------------------------EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             -----------------------------------------------EECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence                                                           445555444566666777888888888888888


Q ss_pred             ccCCccccCCCCCCEEECCCCcCc
Q 039564          333 GHIPSCFGDLTKLESLDLSNNWFS  356 (485)
Q Consensus       333 ~~~p~~~~~l~~L~~L~Ls~N~l~  356 (485)
                      +.+|..++.+++|+.+++..+.+.
T Consensus       291 ~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          291 SRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhccHHHhhccCceEEeCCHHHHH
Confidence            888888888888888888777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=3.2e-27  Score=242.35  Aligned_cols=263  Identities=25%  Similarity=0.286  Sum_probs=210.7

Q ss_pred             CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEE
Q 039564           16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL   95 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~   95 (485)
                      .++++|++++|.++ .+|..+.    ++|++|++++|.++.+..      ....|++|++++|.+++. |..+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~----~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~l-p~~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSL-PVLPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC----TTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCC-CCCCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC----CCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcC-CCCCCCCCEEE
Confidence            36899999999998 7887654    689999999999986532      234559999999999854 44789999999


Q ss_pred             ccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEc
Q 039564           96 VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL  175 (485)
Q Consensus        96 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  175 (485)
                      +++|.+++ +|.   .+++|+.|++++|.++ .+|..          +++|++|++++|.+++ +|.   ..++|+.|++
T Consensus       108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~----------l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L  168 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL----------PPGLQELSVSDNQLAS-LPA---LPSELCKLWA  168 (622)
T ss_dssp             ECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC----------CTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC----------CCCCCEEECcCCcCCC-cCC---ccCCCCEEEC
Confidence            99999985 554   5788999999999988 56642          2789999999999984 444   3467999999


Q ss_pred             cCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhh
Q 039564          176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY  255 (485)
Q Consensus       176 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~  255 (485)
                      ++|.++.. |   ..+++|+.|++++|.+.+ +|..     +++|+.|++++|.++ .+|..                  
T Consensus       169 ~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~~-----~~~L~~L~L~~N~l~-~l~~~------------------  219 (622)
T 3g06_A          169 YNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLT-SLPAL------------------  219 (622)
T ss_dssp             CSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCS-SCCCC------------------
T ss_pred             CCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCCc-----cchhhEEECcCCccc-ccCCC------------------
Confidence            99999764 4   457899999999999884 4443     478999999999887 44421                  


Q ss_pred             hhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccC
Q 039564          256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI  335 (485)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  335 (485)
                                                            +++|+.|++++|.+++ +|   ..+++|+.|+|++|+++ .+
T Consensus       220 --------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~l  256 (622)
T 3g06_A          220 --------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SL  256 (622)
T ss_dssp             --------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred             --------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cC
Confidence                                                  2348899999999885 55   45688999999999998 56


Q ss_pred             CccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCC
Q 039564          336 PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE  385 (485)
Q Consensus       336 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  385 (485)
                      |.   .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|.
T Consensus       257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            65   5688999999999999 7788899999999999999999876553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=5.7e-27  Score=240.47  Aligned_cols=261  Identities=26%  Similarity=0.326  Sum_probs=216.3

Q ss_pred             CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      ++|+++++|..+.  ++|++|+|++|.++ .+|.     .+++|++|+|++|.++++..      ....|++|++++|.+
T Consensus        48 s~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           48 GESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPL  113 (622)
T ss_dssp             CSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCSCCCC------CCTTCCEEEECSCCC
T ss_pred             cCCCcCccChhhC--CCCcEEEecCCCCC-CCCC-----cCCCCCEEEcCCCcCCcCCC------CCCCCCEEECcCCcC
Confidence            4688899999776  89999999999999 6666     36799999999999987532      334559999999999


Q ss_pred             cccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC
Q 039564           81 QGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI  160 (485)
Q Consensus        81 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~  160 (485)
                      ++... .+++|+.|++++|.+++ +|..   +++|++|++++|.++ .+|..          .++|+.|++++|.+++ +
T Consensus       114 ~~l~~-~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~~----------~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          114 THLPA-LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPAL----------PSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             CCCCC-CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCC----------CTTCCEEECCSSCCSC-C
T ss_pred             CCCCC-CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCCc----------cCCCCEEECCCCCCCC-C
Confidence            97544 78999999999999985 6653   589999999999998 55642          2789999999999994 5


Q ss_pred             CccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhc
Q 039564          161 PKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ  240 (485)
Q Consensus       161 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  240 (485)
                      |   ..+++|++|++++|.+++..+    .+++|+.|++++|.+. .+|..     +++|+.|++++|.++ .+|..   
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~~-----~~~L~~L~Ls~N~L~-~lp~~---  239 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL-----PSGLKELIVSGNRLT-SLPVL---  239 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCCC-----CTTCCEEECCSSCCS-CCCCC---
T ss_pred             c---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCCC-----CCCCCEEEccCCccC-cCCCC---
Confidence            5   457899999999999976432    3589999999999998 55542     478999999999998 35521   


Q ss_pred             ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCC
Q 039564          241 CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKG  320 (485)
Q Consensus       241 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  320 (485)
                                                                           +++|+.|++++|.++ .+|.   .+++
T Consensus       240 -----------------------------------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~  262 (622)
T 3g06_A          240 -----------------------------------------------------PSELKELMVSGNRLT-SLPM---LPSG  262 (622)
T ss_dssp             -----------------------------------------------------CTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred             -----------------------------------------------------CCcCcEEECCCCCCC-cCCc---cccc
Confidence                                                                 344999999999998 5665   6789


Q ss_pred             CCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCC
Q 039564          321 LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT  367 (485)
Q Consensus       321 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  367 (485)
                      |+.|+|++|+++ .+|..+..+++|+.|+|++|.+++..|..+..++
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            999999999999 7888999999999999999999998888776554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.1e-27  Score=224.36  Aligned_cols=215  Identities=22%  Similarity=0.207  Sum_probs=118.5

Q ss_pred             CCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCc-cc
Q 039564            3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNF-LQ   81 (485)
Q Consensus         3 n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~-l~   81 (485)
                      +++..+|..+  .++|++|++++|.+++..+..|.  .+++|++|++++|.++++.+. .+..+ ..|++|++++|. ++
T Consensus        21 ~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~-~~~~l-~~L~~L~l~~n~~l~   94 (285)
T 1ozn_A           21 QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAA-AFTGL-ALLEQLDLSDNAQLR   94 (285)
T ss_dssp             SCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTT-TTTTC-TTCCEEECCSCTTCC
T ss_pred             CCcccCCcCC--CCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHh-hcCCc-cCCCEEeCCCCCCcc
Confidence            3455555543  35666666666666654445555  566666666666666655443 22223 333666666665 44


Q ss_pred             ccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc
Q 039564           82 GPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG  158 (485)
Q Consensus        82 ~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~  158 (485)
                      ...+..   +++|++|++++|.+++..|..|.++++|++|++++|.+++..+       ..|..+++|++|++++|.+++
T Consensus        95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A           95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-------DTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEECCSSCCCE
T ss_pred             ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-------hHhccCCCccEEECCCCcccc
Confidence            443332   5566666666666665555555666666666666666552222       123334566666666666654


Q ss_pred             cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCc
Q 039564          159 RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG  232 (485)
Q Consensus       159 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  232 (485)
                      ..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..+  ..+++|+.|++++|.+.+
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCEEC
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc--ccCcccCEEeccCCCccC
Confidence            444455556666666666666655555556666666666666666554333333  455566666666665553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.8e-29  Score=239.69  Aligned_cols=228  Identities=22%  Similarity=0.264  Sum_probs=171.2

Q ss_pred             CcEEEccCCccc-ccCChhhc-------CCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCc
Q 039564           91 TRHYLVSKNNLT-GEIPSWIC-------NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK  162 (485)
Q Consensus        91 L~~L~l~~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~  162 (485)
                      |++|++++|.+. ..+|..+.       ++++|++|++++|.+++.+|..+.     +..+++|++|++++|.+++. |.
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~-~~  138 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL-----EATGPDLNILNLRNVSWATR-DA  138 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS-----SCCSCCCSEEEEESCBCSSS-SS
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH-----HhcCCCccEEEccCCCCcch-hH
Confidence            555555555552 34555554       688888888888888877776431     14558888888888888866 77


Q ss_pred             cccCC-----CCCcEEEccCCcccCCcChhhhCCCCCCEEEeecccccccc--CCccccCCCCCccEEEccCccCCc--c
Q 039564          163 SLANC-----AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEI--KEHKMECGFPKLRIVDLSNNSFTG--N  233 (485)
Q Consensus       163 ~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~~--~  233 (485)
                      .+..+     ++|++|++++|.+.+..+..|+.+++|++|++++|++.+.+  +..+....+++|++|++++|.+++  .
T Consensus       139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  218 (312)
T 1wwl_A          139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG  218 (312)
T ss_dssp             HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred             HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence            77666     88889999988888888788888889999999988876542  223322567889999999998872  1


Q ss_pred             CChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCc-
Q 039564          234 LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP-  312 (485)
Q Consensus       234 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-  312 (485)
                      ++...+..                                                    ++.|+.|++++|.+.+..| 
T Consensus       219 ~~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~  246 (312)
T 1wwl_A          219 VCSALAAA----------------------------------------------------RVQLQGLDLSHNSLRDAAGA  246 (312)
T ss_dssp             HHHHHHHT----------------------------------------------------TCCCSEEECTTSCCCSSCCC
T ss_pred             HHHHHHhc----------------------------------------------------CCCCCEEECCCCcCCcccch
Confidence            11111111                                                    2348889999999987664 


Q ss_pred             hhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          313 TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       313 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      ..+..+++|++|+|++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus       247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            45667899999999999998 7777766  8899999999999965 66 8899999999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=4.9e-31  Score=264.78  Aligned_cols=357  Identities=16%  Similarity=0.103  Sum_probs=254.5

Q ss_pred             CCCCCEEECCCCcCCCCCCcc-cccCCCCCCcEEEccCCcCcCcCC--CCCCCCCCCCccEEEcCCCcccccCC----CC
Q 039564           15 QKHLKALDLSSNKLHGNIPKW-LLNPSMQNFSYLNLSKNSLTGFDQ--HPSVFPWSSGEFTLDLSSNFLQGPIP----AP   87 (485)
Q Consensus        15 l~~L~~L~Ls~n~~~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~lL~~L~l~~n~l~~~~~----~~   87 (485)
                      .++|++|||++|.+++..... +.  .+++|++|++++|.++....  .+..+...+.|++|++++|.+++..+    ..
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CccceehhhhhcccCchhHHHHHh--hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence            367899999999998554443 55  78999999999999874210  01123334455999999999876322    11


Q ss_pred             CC----CCcEEEccCCcccc----cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc
Q 039564           88 PT----KTRHYLVSKNNLTG----EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR  159 (485)
Q Consensus        88 ~~----~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~  159 (485)
                      +.    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+..  ..+...++|++|++++|.+++.
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l~~~~~~L~~L~L~~n~l~~~  157 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--GLLDPQCRLEKLQLEYCSLSAA  157 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--HHTSTTCCCCEEECTTSCCBGG
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH--HHhcCCCcceEEECCCCCCCHH
Confidence            33    79999999999984    45888999999999999999987554444332  1123356899999999999864


Q ss_pred             C----CccccCCCCCcEEEccCCcccCCcChhhh-----CCCCCCEEEeeccccccc----cCCccccCCCCCccEEEcc
Q 039564          160 I----PKSLANCAVLEIIDLGNNQIIDTFPAWLG-----TLSELDILVLQSNNFHGE----IKEHKMECGFPKLRIVDLS  226 (485)
Q Consensus       160 ~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~l~  226 (485)
                      .    +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+.+.    ++..+  ..+++|+.|+++
T Consensus       158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls  235 (461)
T 1z7x_W          158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV--ASKASLRELALG  235 (461)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH--HHCTTCCEEECC
T ss_pred             HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH--HhCCCccEEecc
Confidence            3    56677789999999999998765554444     367999999999998853    34444  567999999999


Q ss_pred             CccCCccCC----hhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEc
Q 039564          227 NNSFTGNLP----SKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVIL  302 (485)
Q Consensus       227 ~n~l~~~~~----~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~L  302 (485)
                      +|.+.+...    ..++..+..|+.++++++........         .+               ......++.|+.|++
T Consensus       236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---------~l---------------~~~l~~~~~L~~L~L  291 (461)
T 1z7x_W          236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG---------DL---------------CRVLRAKESLKELSL  291 (461)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH---------HH---------------HHHHHHCTTCCEEEC
T ss_pred             CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH---------HH---------------HHHHhhCCCcceEEC
Confidence            999874321    22333567788877765432110000         00               000112466999999


Q ss_pred             CCCcCcccCchhhcc-----CCCCCEEeCcCceeccc----CCccccCCCCCCEEECCCCcCcccCcccccC-----CCC
Q 039564          303 SSNGFHGEIPTSIAN-----LKGLQVLSLANNNLEGH----IPSCFGDLTKLESLDLSNNWFSGQIPQQLTG-----LTF  368 (485)
Q Consensus       303 s~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~  368 (485)
                      ++|.+.+..+..+..     .++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+..+..+..     .++
T Consensus       292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  371 (461)
T ss_dssp             TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence            999987655544443     36999999999999865    4666778899999999999998765554432     679


Q ss_pred             CCEEeccCCcccc----cCCCC-CCCCCCCCCCCCCCC
Q 039564          369 LEFFNVSHNNLTG----PIPEA-NQFPTFDSSSFDGNS  401 (485)
Q Consensus       369 L~~L~l~~N~l~~----~~p~~-~~~~~l~~~~~~~n~  401 (485)
                      |+.|++++|.+++    .+|.. ...+.+..+++.+|+
T Consensus       372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            9999999999985    44432 235667777887775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=5.2e-29  Score=237.00  Aligned_cols=204  Identities=23%  Similarity=0.193  Sum_probs=127.4

Q ss_pred             hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhh
Q 039564          109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL  188 (485)
Q Consensus       109 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  188 (485)
                      |..+++|++|++++|.+++ +|.           .++|++|++++|.+++..+..   +++|++|++++|.+++..+..+
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~-l~~-----------~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~  140 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQE-LLV-----------GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE  140 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEE-EEE-----------CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT
T ss_pred             hhhcCCCCEEECcCCcccc-ccC-----------CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh
Confidence            4455555555555555542 110           145555555555555433322   3445555666555555555555


Q ss_pred             hCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccc
Q 039564          189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDF  268 (485)
Q Consensus       189 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  268 (485)
                      ..+++|++|++++|.+.+..+..+. ..+++|++|++++|.+++ ++...                              
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~-~~~~~------------------------------  188 (317)
T 3o53_A          141 GCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYD-VKGQV------------------------------  188 (317)
T ss_dssp             GGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCE-EECCC------------------------------
T ss_pred             hccCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcCcc-ccccc------------------------------
Confidence            5555666666666655544333331 245566666666666552 11100                              


Q ss_pred             ccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEE
Q 039564          269 YGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL  348 (485)
Q Consensus       269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  348 (485)
                                              .++.|+.|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus       189 ------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          189 ------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF  242 (317)
T ss_dssp             ------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred             ------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence                                    02336777777777764 4445788899999999999998 577788899999999


Q ss_pred             ECCCCcCc-ccCcccccCCCCCCEEeccC-CcccccCCC
Q 039564          349 DLSNNWFS-GQIPQQLTGLTFLEFFNVSH-NNLTGPIPE  385 (485)
Q Consensus       349 ~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~  385 (485)
                      ++++|.+. +.+|.++..++.|+.+++++ +.+.+..|.
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             EccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            99999998 77888899999999999984 456655443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.8e-28  Score=231.99  Aligned_cols=217  Identities=22%  Similarity=0.202  Sum_probs=157.5

Q ss_pred             cEEEcCCCcccccCCC-CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564           71 FTLDLSSNFLQGPIPA-PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII  149 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L  149 (485)
                      ++|++++|.+++..+- .+++|++|++++|.+++. +    ..++|++|++++|.+++..+.          .+++|++|
T Consensus        61 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~----------~~~~L~~L  125 (317)
T 3o53_A           61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCS----------RGQGKKNI  125 (317)
T ss_dssp             CEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC----------CCSSCEEE
T ss_pred             CEEECCCCcCCcchhhhhcCCCCEEECcCCccccc-c----CCCCcCEEECCCCccCCcCcc----------ccCCCCEE
Confidence            4444444444433221 145566666666665532 2    237888888888888744332          23678888


Q ss_pred             EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhh-CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCc
Q 039564          150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLG-TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNN  228 (485)
Q Consensus       150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  228 (485)
                      ++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+. +..   ..+++|++|++++|
T Consensus       126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~---~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ---VVFAKLKTLDLSSN  201 (317)
T ss_dssp             ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC---CCCTTCCEEECCSS
T ss_pred             ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc---cccccCCEEECCCC
Confidence            8888888877777888888899999999988877776664 688999999999988744 333   34788999999999


Q ss_pred             cCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCc
Q 039564          229 SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFH  308 (485)
Q Consensus       229 ~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  308 (485)
                      .++ .+|.. +..                                                    ++.|+.|++++|.++
T Consensus       202 ~l~-~l~~~-~~~----------------------------------------------------l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          202 KLA-FMGPE-FQS----------------------------------------------------AAGVTWISLRNNKLV  227 (317)
T ss_dssp             CCC-EECGG-GGG----------------------------------------------------GTTCSEEECTTSCCC
T ss_pred             cCC-cchhh-hcc----------------------------------------------------cCcccEEECcCCccc
Confidence            888 44433 222                                                    334888999999998


Q ss_pred             ccCchhhccCCCCCEEeCcCceec-ccCCccccCCCCCCEEECCCC-cCcccCcc
Q 039564          309 GEIPTSIANLKGLQVLSLANNNLE-GHIPSCFGDLTKLESLDLSNN-WFSGQIPQ  361 (485)
Q Consensus       309 ~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~  361 (485)
                       .+|..+..+++|+.|++++|++. +.+|..+..+++|+.|+++++ .+.+..|.
T Consensus       228 -~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             -EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             -chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence             57778899999999999999998 788889999999999999855 56655443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=3e-27  Score=237.65  Aligned_cols=234  Identities=26%  Similarity=0.209  Sum_probs=132.7

Q ss_pred             CCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEc
Q 039564           17 HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV   96 (485)
Q Consensus        17 ~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l   96 (485)
                      +|++|+|++|.+.+..|..|.  .+++|++|+|++|.+++..+   +..+.. |++|++++|.+                
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~---l~~l~~-L~~L~Ls~N~l----------------   92 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD---LESLST-LRTLDLNNNYV----------------   92 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE---CTTCTT-CCEEECCSSEE----------------
T ss_pred             CccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc---cccCCC-CCEEEecCCcC----------------
Confidence            566666666666554445555  55666666666665554322   111111 24444443333                


Q ss_pred             cCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEcc
Q 039564           97 SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG  176 (485)
Q Consensus        97 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  176 (485)
                           ++. |    ..++|++|++++|.+++..+.          .+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus        93 -----~~l-~----~~~~L~~L~L~~N~l~~~~~~----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (487)
T 3oja_A           93 -----QEL-L----VGPSIETLHAANNNISRVSCS----------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (487)
T ss_dssp             -----EEE-E----ECTTCCEEECCSSCCCCEEEC----------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred             -----CCC-C----CCCCcCEEECcCCcCCCCCcc----------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence                 321 1    125566666666655533221          12456666666666665555555566666666666


Q ss_pred             CCcccCCcChhhh-CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhh
Q 039564          177 NNQIIDTFPAWLG-TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY  255 (485)
Q Consensus       177 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~  255 (485)
                      +|.+++..|..+. .+++|++|++++|.+.+. +..   ..+++                                    
T Consensus       153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~---~~l~~------------------------------------  192 (487)
T 3oja_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ---VVFAK------------------------------------  192 (487)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC---CCCTT------------------------------------
T ss_pred             CCCCCCcChHHHhhhCCcccEEecCCCccccc-ccc---ccCCC------------------------------------
Confidence            6666555555443 455555555555555432 111   12334                                    


Q ss_pred             hhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccC
Q 039564          256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI  335 (485)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  335 (485)
                                                               |+.|++++|.+++ +|..+..+++|+.|+|++|++++ +
T Consensus       193 -----------------------------------------L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-l  229 (487)
T 3oja_A          193 -----------------------------------------LKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-I  229 (487)
T ss_dssp             -----------------------------------------CCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred             -----------------------------------------CCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-c
Confidence                                                     4444555555543 33336677888888888888884 6


Q ss_pred             CccccCCCCCCEEECCCCcCc-ccCcccccCCCCCCEEecc
Q 039564          336 PSCFGDLTKLESLDLSNNWFS-GQIPQQLTGLTFLEFFNVS  375 (485)
Q Consensus       336 p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~  375 (485)
                      |..+..+++|+.|++++|.+. +.+|.++..++.|+.++++
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            667788888888888888887 5667777777777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.6e-25  Score=208.62  Aligned_cols=226  Identities=19%  Similarity=0.149  Sum_probs=145.3

Q ss_pred             EEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEc
Q 039564           72 TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDM  151 (485)
Q Consensus        72 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~L  151 (485)
                      +++..+..++......++++++|++++|.+++..+..|.++++|++|++++|.+++..+.       .|..+++|++|++
T Consensus        11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~L   83 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-------AYQSLSHLSTLIL   83 (276)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT-------TTTTCTTCCEEEC
T ss_pred             eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH-------HccCCcCCCEEEC
Confidence            445555555433333355667777777777655555677777777777777777633332       3344567777777


Q ss_pred             cCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccc-cCCccccCCCCCccEEEccCccC
Q 039564          152 SHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE-IKEHKMECGFPKLRIVDLSNNSF  230 (485)
Q Consensus       152 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l  230 (485)
                      ++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+  ..+++|++|++++|.+
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A           84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCC
T ss_pred             CCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCC
Confidence            77777766666677777777777777777665555566666666666666666542 34444  4455566666665555


Q ss_pred             CccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc
Q 039564          231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE  310 (485)
Q Consensus       231 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  310 (485)
                      +                                                                             +.
T Consensus       162 ~-----------------------------------------------------------------------------~~  164 (276)
T 2z62_A          162 Q-----------------------------------------------------------------------------SI  164 (276)
T ss_dssp             C-----------------------------------------------------------------------------EE
T ss_pred             C-----------------------------------------------------------------------------cC
Confidence            4                                                                             33


Q ss_pred             CchhhccCCCCC----EEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCC
Q 039564          311 IPTSIANLKGLQ----VLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIP  384 (485)
Q Consensus       311 ~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  384 (485)
                      .+..+..+++|+    +|++++|++++..+..+.. .+|+.|++++|++++..+..|..+++|+.|++++|++++..|
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            333333333344    7888888887555555543 478888888888886666667888888888888888876554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=4.8e-27  Score=236.22  Aligned_cols=246  Identities=19%  Similarity=0.148  Sum_probs=188.4

Q ss_pred             CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCC
Q 039564           88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANC  167 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  167 (485)
                      +++|++|++++|.+++..|..|..+++|++|+|++|.+++..|         |..+++|++|++++|.+++..+     .
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------l~~l~~L~~L~Ls~N~l~~l~~-----~   98 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---------LESLSTLRTLDLNNNYVQELLV-----G   98 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---------CTTCTTCCEEECCSSEEEEEEE-----C
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---------cccCCCCCEEEecCCcCCCCCC-----C
Confidence            4578888888888887777889999999999999998885443         3456889999999999885432     3


Q ss_pred             CCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhccccccee
Q 039564          168 AVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF  247 (485)
Q Consensus       168 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  247 (485)
                      ++|++|++++|.+++..+.   .+++|+.|++++|.+.+..|..+  ..+++|+.|++++|.+++..|..+...      
T Consensus        99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~------  167 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS------  167 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG------
T ss_pred             CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh------
Confidence            7899999999998876654   46789999999999987777766  678899999999999886555443222      


Q ss_pred             ccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCc
Q 039564          248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLA  327 (485)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  327 (485)
                                                                    ++.|+.|+|++|.+++. |. ...+++|++|+|+
T Consensus       168 ----------------------------------------------l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls  199 (487)
T 3oja_A          168 ----------------------------------------------SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS  199 (487)
T ss_dssp             ----------------------------------------------TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred             ----------------------------------------------CCcccEEecCCCccccc-cc-cccCCCCCEEECC
Confidence                                                          33488899999999865 32 3468999999999


Q ss_pred             CceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc-cCCCC-CCCCCCCCCCC-------C
Q 039564          328 NNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG-PIPEA-NQFPTFDSSSF-------D  398 (485)
Q Consensus       328 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~-~~~~~l~~~~~-------~  398 (485)
                      +|++++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+ .+|.. ..++.+..+..       .
T Consensus       200 ~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~  277 (487)
T 3oja_A          200 SNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (487)
T ss_dssp             SSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccC
Confidence            999996554 58899999999999999995 77889999999999999999983 32221 12222222223       2


Q ss_pred             CCCCCCCCCC
Q 039564          399 GNSGLCGKPL  408 (485)
Q Consensus       399 ~n~~lc~~~~  408 (485)
                      ++++.|.++.
T Consensus       278 ~~~~~c~~~~  287 (487)
T 3oja_A          278 QNEEECTVPT  287 (487)
T ss_dssp             SSSCCCSSTT
T ss_pred             CCcccccCCc
Confidence            6788887754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.4e-27  Score=224.97  Aligned_cols=253  Identities=23%  Similarity=0.244  Sum_probs=200.3

Q ss_pred             CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccc-ccCCCccccCcccccCCCCccEEEccCCcccccCCccc--
Q 039564           88 PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS-GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL--  164 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--  164 (485)
                      ..+|++|++++|.+  .+|..+...  |+.|++++|.+. ..+|..+......+..+++|++|++++|.+++..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            45678888888888  677766554  899999999984 34554332000111246899999999999999899886  


Q ss_pred             cCCCCCcEEEccCCcccCCcChhhhCC-----CCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCC--hh
Q 039564          165 ANCAVLEIIDLGNNQIIDTFPAWLGTL-----SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLP--SK  237 (485)
Q Consensus       165 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~  237 (485)
                      ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+.++  ..
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcchHHHHH
Confidence            8999999999999999887 7778877     999999999999997777777  789999999999999875321  11


Q ss_pred             h-hcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcc--cCc-h
Q 039564          238 Y-FQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHG--EIP-T  313 (485)
Q Consensus       238 ~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p-~  313 (485)
                      . +.                                                    .++.|+.|++++|.+++  .++ .
T Consensus       195 ~~~~----------------------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          195 LCPL----------------------------------------------------KFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             SCTT----------------------------------------------------SCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHhc----------------------------------------------------cCCCCCEEECCCCcCcchHHHHHH
Confidence            0 01                                                    13459999999999983  222 3


Q ss_pred             hhccCCCCCEEeCcCceecccCC-ccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCC
Q 039564          314 SIANLKGLQVLSLANNNLEGHIP-SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTF  392 (485)
Q Consensus       314 ~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l  392 (485)
                      .+..+++|++|++++|++++..| ..+..+++|+.|++++|+++ .+|..+.  ++|+.|++++|++++. |....++.+
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L  298 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQV  298 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEE
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCC
Confidence            45678999999999999998775 45677899999999999999 7787766  8999999999999976 655667778


Q ss_pred             CCCCCCCCCCC
Q 039564          393 DSSSFDGNSGL  403 (485)
Q Consensus       393 ~~~~~~~n~~l  403 (485)
                      ..+++.+|+..
T Consensus       299 ~~L~L~~N~l~  309 (312)
T 1wwl_A          299 GNLSLKGNPFL  309 (312)
T ss_dssp             EEEECTTCTTT
T ss_pred             CEEeccCCCCC
Confidence            88889998754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=7.4e-25  Score=204.19  Aligned_cols=209  Identities=20%  Similarity=0.191  Sum_probs=148.0

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV  223 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  223 (485)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+  ..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccEE
Confidence            356666666666665555566666666666666666665555566666666666666666664444444  556666666


Q ss_pred             EccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcC
Q 039564          224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS  303 (485)
Q Consensus       224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls  303 (485)
                      ++++|.+.+ ++...+..                                                    ++.|+.|+++
T Consensus       106 ~l~~n~l~~-~~~~~~~~----------------------------------------------------l~~L~~L~l~  132 (276)
T 2z62_A          106 VAVETNLAS-LENFPIGH----------------------------------------------------LKTLKELNVA  132 (276)
T ss_dssp             ECTTSCCCC-STTCCCTT----------------------------------------------------CTTCCEEECC
T ss_pred             ECCCCCccc-cCchhccc----------------------------------------------------CCCCCEEECc
Confidence            666666652 22111111                                                    2336777777


Q ss_pred             CCcCccc-CchhhccCCCCCEEeCcCceecccCCccccCCCCCC----EEECCCCcCcccCcccccCCCCCCEEeccCCc
Q 039564          304 SNGFHGE-IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLE----SLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNN  378 (485)
Q Consensus       304 ~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~  378 (485)
                      +|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+    .|++++|.+++..+..+. ..+|+.|++++|.
T Consensus       133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~  211 (276)
T 2z62_A          133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQ  211 (276)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSC
T ss_pred             CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCc
Confidence            7777653 578899999999999999999988888888877777    899999999976665554 4589999999999


Q ss_pred             ccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564          379 LTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       379 l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      +++..+.. ..++.+..+++.+||+.|+|+.
T Consensus       212 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          212 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             eeecCHhHhcccccccEEEccCCcccccCCc
Confidence            99765543 4577888999999999999863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=7.6e-25  Score=205.09  Aligned_cols=204  Identities=26%  Similarity=0.307  Sum_probs=141.2

Q ss_pred             hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhh
Q 039564          109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL  188 (485)
Q Consensus       109 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  188 (485)
                      +.+++++++++++++.++ .+|..+.         +.++.|++++|.+++..+..|..+++|++|++++|.+++..+.  
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--   73 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--   73 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--
Confidence            556778888888888877 6665431         5678888888888877777788888888888888887665442  


Q ss_pred             hCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccc
Q 039564          189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDF  268 (485)
Q Consensus       189 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  268 (485)
                      +.+++|++|++++|.+. .+|..+  ..+++|++|++++|.++ .++...|..                           
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~l~~N~l~-~l~~~~~~~---------------------------  122 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLPLLG--QTLPALTVLDVSFNRLT-SLPLGALRG---------------------------  122 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCT--TTCTTCCEEECCSSCCC-CCCSSTTTT---------------------------
T ss_pred             CCCCcCCEEECCCCcCC-cCchhh--ccCCCCCEEECCCCcCc-ccCHHHHcC---------------------------
Confidence            57778888888888776 556555  56777777777777776 343322222                           


Q ss_pred             ccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEE
Q 039564          269 YGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESL  348 (485)
Q Consensus       269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  348 (485)
                                               ++.|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus       123 -------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          123 -------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             -------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             -------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence                                     2236667777777765555556677777777777777775555556667777777


Q ss_pred             ECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          349 DLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       349 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      ++++|+++ .+|..+...+.|+.+++++|++.+
T Consensus       178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            77777777 566666666677777777777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=2.5e-24  Score=199.86  Aligned_cols=205  Identities=21%  Similarity=0.260  Sum_probs=143.0

Q ss_pred             CCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCC
Q 039564          114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE  193 (485)
Q Consensus       114 ~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  193 (485)
                      ..+.++++++.++ .+|..+.         +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~   86 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN   86 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---------TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred             CCCEEEccCCCCC-ccCCCCC---------CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence            3566777777776 5664331         45777777777777555566777777777777777776666666677777


Q ss_pred             CCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcC
Q 039564          194 LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFP  273 (485)
Q Consensus       194 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  273 (485)
                      |++|++++|.+.+..+..+  ..+++|++|++++|.++ .++...+..                                
T Consensus        87 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~--------------------------------  131 (270)
T 2o6q_A           87 LETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLK-SLPPRVFDS--------------------------------  131 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCC-CCCTTTTTT--------------------------------
T ss_pred             CCEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccC-eeCHHHhCc--------------------------------
Confidence            7777777777764444444  56677777777777776 333222222                                


Q ss_pred             cccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCC
Q 039564          274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN  353 (485)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  353 (485)
                                          ++.|+.|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus       132 --------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          132 --------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             --------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             --------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence                                233677777777777555556778888888888888888766667888888888888888


Q ss_pred             cCcccCcccccCCCCCCEEeccCCcccccC
Q 039564          354 WFSGQIPQQLTGLTFLEFFNVSHNNLTGPI  383 (485)
Q Consensus       354 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  383 (485)
                      ++++..+..|..+++|+.|++++|++.+..
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             cCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            888666667788888888888888877644

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=5e-24  Score=197.76  Aligned_cols=206  Identities=23%  Similarity=0.256  Sum_probs=175.8

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV  223 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  223 (485)
                      ...+.++++++.++ .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+  ..+++|++|
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEE
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEE
Confidence            35789999999999 5776654  689999999999998888889999999999999999985444444  678999999


Q ss_pred             EccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcC
Q 039564          224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS  303 (485)
Q Consensus       224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls  303 (485)
                      ++++|.+. .++...+..                                                    ++.|+.|+++
T Consensus        91 ~l~~n~l~-~~~~~~~~~----------------------------------------------------l~~L~~L~l~  117 (270)
T 2o6q_A           91 WVTDNKLQ-ALPIGVFDQ----------------------------------------------------LVNLAELRLD  117 (270)
T ss_dssp             ECCSSCCC-CCCTTTTTT----------------------------------------------------CSSCCEEECC
T ss_pred             ECCCCcCC-cCCHhHccc----------------------------------------------------ccCCCEEECC
Confidence            99999998 555443332                                                    3348999999


Q ss_pred             CCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564          304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI  383 (485)
Q Consensus       304 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  383 (485)
                      +|.+++..+..+..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            99999888888999999999999999999777777999999999999999999877778999999999999999998755


Q ss_pred             CCC-CCCCCCCCCCCCCCCCCCCCC
Q 039564          384 PEA-NQFPTFDSSSFDGNSGLCGKP  407 (485)
Q Consensus       384 p~~-~~~~~l~~~~~~~n~~lc~~~  407 (485)
                      +.. ..++.+..+.+.+||+.|+|+
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HHHhccccCCCEEEecCCCeeCCCc
Confidence            543 356788889999999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.2e-23  Score=196.97  Aligned_cols=205  Identities=23%  Similarity=0.234  Sum_probs=176.4

Q ss_pred             hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CC
Q 039564           11 FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PT   89 (485)
Q Consensus        11 ~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~   89 (485)
                      .++++++++.++++++.++ .+|..+.    +++++|++++|.+++..+. .+..+ ..|++|++++|.+++..+.. ++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~N~l~~~~~~-~~~~l-~~L~~L~L~~n~l~~~~~~~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP----KDTTILHLSENLLYTFSLA-TLMPY-TRLTQLNLDRAELTKLQVDGTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC----TTCCEEECTTSCCSEEEGG-GGTTC-TTCCEEECTTSCCCEEECCSCCT
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC----CCCCEEEcCCCcCCccCHH-HhhcC-CCCCEEECCCCccCcccCCCCCC
Confidence            4678899999999999999 7787654    6899999999999987654 34444 44599999999998765544 89


Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564           90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV  169 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  169 (485)
                      +|++|++++|.+. .+|..+..+++|++|++++|++++..|       ..|..+++|++|++++|.+++..+..|..+++
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL-------GALRGLGELQELYLKGNELKTLPPGLLTPTPK  149 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS-------STTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH-------HHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence            9999999999998 688889999999999999999994433       34556799999999999999877778899999


Q ss_pred             CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCcc
Q 039564          170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN  233 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  233 (485)
                      |++|++++|+++...+..|..+++|++|++++|.+. .+|..+  ...++|+.+++++|++...
T Consensus       150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~--~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF--FGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT--TTTCCCSEEECCSCCBCCS
T ss_pred             CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh--cccccCCeEEeCCCCccCc
Confidence            999999999999888888899999999999999998 777776  5678999999999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.7e-24  Score=201.07  Aligned_cols=179  Identities=22%  Similarity=0.231  Sum_probs=111.7

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV  223 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  223 (485)
                      ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+  ..+++|++|
T Consensus        63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L  138 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYL  138 (272)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEE
T ss_pred             CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEE
Confidence            4555555555555431  244555555555555555555444445555555555555555553333333  445555555


Q ss_pred             EccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcC
Q 039564          224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS  303 (485)
Q Consensus       224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls  303 (485)
                      ++++|.++ .++...+..                                                    ++.|+.|+++
T Consensus       139 ~L~~n~l~-~~~~~~~~~----------------------------------------------------l~~L~~L~l~  165 (272)
T 3rfs_A          139 NLAHNQLQ-SLPKGVFDK----------------------------------------------------LTNLTELDLS  165 (272)
T ss_dssp             ECCSSCCC-CCCTTTTTT----------------------------------------------------CTTCCEEECC
T ss_pred             ECCCCccC-ccCHHHhcc----------------------------------------------------CccCCEEECC
Confidence            55555555 232222211                                                    2225666666


Q ss_pred             CCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564          304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI  383 (485)
Q Consensus       304 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  383 (485)
                      +|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.       ++.|+.++++.|.++|.+
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGB
T ss_pred             CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcc
Confidence            6666655555677888899999999998877777788889999999999987743       456888889999999888


Q ss_pred             CCC
Q 039564          384 PEA  386 (485)
Q Consensus       384 p~~  386 (485)
                      |..
T Consensus       239 p~~  241 (272)
T 3rfs_A          239 RNS  241 (272)
T ss_dssp             BCT
T ss_pred             cCc
Confidence            864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=6.3e-24  Score=197.29  Aligned_cols=62  Identities=26%  Similarity=0.309  Sum_probs=24.1

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  205 (485)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus       133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            33444444444443333333333444444444444443333333333344444444444333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=5.6e-24  Score=201.64  Aligned_cols=229  Identities=19%  Similarity=0.206  Sum_probs=158.8

Q ss_pred             CCcEEEccCCcccccC-Ch--hhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCC----c
Q 039564           90 KTRHYLVSKNNLTGEI-PS--WICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP----K  162 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~-p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~----~  162 (485)
                      .++.+.+.++.+.... ..  .+..+++|++|++++|.+++..|..+..     ..+++|++|++++|.+++..+    .
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-----ATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS-----CCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh-----ccCCCCCEEEeecccccchhhhhHHH
Confidence            3555666665554211 11  1223466888888888877776654310     345778888888888876444    3


Q ss_pred             cccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccc--cCCccccCCCCCccEEEccCccCCccCChh---
Q 039564          163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE--IKEHKMECGFPKLRIVDLSNNSFTGNLPSK---  237 (485)
Q Consensus       163 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---  237 (485)
                      .+..+++|++|++++|.+.+..+..|..+++|++|++++|++.+.  ++.......+++|++|++++|.++ .++..   
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~  218 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA  218 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH
Confidence            445678888888888888777777888888888888888887542  222222246788888888888886 33321   


Q ss_pred             hhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhcc
Q 039564          238 YFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIAN  317 (485)
Q Consensus       238 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  317 (485)
                      .+..                                                    ++.|+.|++++|.+.+..|..+..
T Consensus       219 l~~~----------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~  246 (310)
T 4glp_A          219 LAAA----------------------------------------------------GVQPHSLDLSHNSLRATVNPSAPR  246 (310)
T ss_dssp             HHHH----------------------------------------------------TCCCSSEECTTSCCCCCCCSCCSS
T ss_pred             HHhc----------------------------------------------------CCCCCEEECCCCCCCccchhhHHh
Confidence            1111                                                    334888888888888777777666


Q ss_pred             C---CCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          318 L---KGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       318 l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      +   ++|++|+|++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus       247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            6   68999999999998 6677664  7899999999999854 43 6778899999999998863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=4.3e-25  Score=216.09  Aligned_cols=245  Identities=18%  Similarity=0.220  Sum_probs=171.6

Q ss_pred             CCCCcEEEccCCcccccCC----hhhcCCCCCCEEEcccC---cccccCCCccccCcccccCCCCccEEEccCCcccc--
Q 039564           88 PTKTRHYLVSKNNLTGEIP----SWICNLSSLYILDLSDN---NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG--  158 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~--  158 (485)
                      +++|++|++++|.+....+    ..+..+++|++|+|++|   ++.+.+|..+..+...+..+++|++|+|++|.+++  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4566777777776665433    33667888888888885   44455666665555556677888888888888876  


Q ss_pred             --cCCccccCCCCCcEEEccCCcccCCcChhhh----CC---------CCCCEEEeeccccc-cccC---CccccCCCCC
Q 039564          159 --RIPKSLANCAVLEIIDLGNNQIIDTFPAWLG----TL---------SELDILVLQSNNFH-GEIK---EHKMECGFPK  219 (485)
Q Consensus       159 --~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~~~~~~l~~  219 (485)
                        .++..+..+++|++|+|++|.++...+..+.    .+         ++|++|++++|.+. +.++   ..+  ..+++
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~  188 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF--QSHRL  188 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH--HHCTT
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH--HhCCC
Confidence              4666777888888888888887644333333    33         78888888888876 2333   223  45678


Q ss_pred             ccEEEccCccCCccCChhhhc-ccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCccccccccccccc
Q 039564          220 LRIVDLSNNSFTGNLPSKYFQ-CWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILT  298 (485)
Q Consensus       220 L~~L~l~~n~l~~~~~~~~~~-~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~  298 (485)
                      |+.|++++|.+...-...... .+                                                 ..++.|+
T Consensus       189 L~~L~L~~n~l~~~g~~~l~~~~l-------------------------------------------------~~~~~L~  219 (386)
T 2ca6_A          189 LHTVKMVQNGIRPEGIEHLLLEGL-------------------------------------------------AYCQELK  219 (386)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTG-------------------------------------------------GGCTTCC
T ss_pred             cCEEECcCCCCCHhHHHHHHHHHh-------------------------------------------------hcCCCcc
Confidence            888888888776210000000 00                                                 1134588


Q ss_pred             EEEcCCCcCc----ccCchhhccCCCCCEEeCcCceeccc----CCccccC--CCCCCEEECCCCcCcc----cCcccc-
Q 039564          299 AVILSSNGFH----GEIPTSIANLKGLQVLSLANNNLEGH----IPSCFGD--LTKLESLDLSNNWFSG----QIPQQL-  363 (485)
Q Consensus       299 ~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~~-  363 (485)
                      .|+|++|.++    +.+|..+..+++|++|+|++|++++.    ++..+..  +++|+.|+|++|.+++    .+|..+ 
T Consensus       220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~  299 (386)
T 2ca6_A          220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID  299 (386)
T ss_dssp             EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred             EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence            8899999885    56778888899999999999998765    4566633  8899999999999987    477766 


Q ss_pred             cCCCCCCEEeccCCcccccC
Q 039564          364 TGLTFLEFFNVSHNNLTGPI  383 (485)
Q Consensus       364 ~~l~~L~~L~l~~N~l~~~~  383 (485)
                      .++++|+.|++++|++++..
T Consensus       300 ~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          300 EKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHCTTCCEEECTTSBSCTTS
T ss_pred             hcCCCceEEEccCCcCCcch
Confidence            66899999999999998655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1.7e-24  Score=209.87  Aligned_cols=86  Identities=14%  Similarity=0.142  Sum_probs=47.3

Q ss_pred             ccEEEcCCCcCccc----Cchhhcc-CCCCCEEeCcCceecccCC----ccccCCCCCCEEECCCCcCccc-------Cc
Q 039564          297 LTAVILSSNGFHGE----IPTSIAN-LKGLQVLSLANNNLEGHIP----SCFGDLTKLESLDLSNNWFSGQ-------IP  360 (485)
Q Consensus       297 L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~-------~p  360 (485)
                      |+.|++++|.+.+.    ++..+.. .++|++|+|++|++++..+    ..+..+++|+.|++++|.+.+.       ++
T Consensus       198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~  277 (362)
T 3goz_A          198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG  277 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred             CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence            55666666665542    3333444 2466666666666654333    2234556666666666664322       22


Q ss_pred             ccccCCCCCCEEeccCCccccc
Q 039564          361 QQLTGLTFLEFFNVSHNNLTGP  382 (485)
Q Consensus       361 ~~~~~l~~L~~L~l~~N~l~~~  382 (485)
                      ..+..+++|+.|++++|++...
T Consensus       278 ~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          278 AAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHhccCCceEEEecCCCcCCCc
Confidence            3445566666677777766543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=4e-22  Score=192.11  Aligned_cols=242  Identities=16%  Similarity=0.103  Sum_probs=180.3

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccE-E
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGI-I  149 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~-L  149 (485)
                      ++++.++++++.++...++++++|++++|+|+...+.+|.++++|++|+|++|.+.+.+|.      .+|.+++++++ +
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~------~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA------DVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT------TSBCSCTTCCEEE
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh------hHhhcchhhhhhh
Confidence            5677777777754434467888888888888865566899999999999999998767775      45666777665 6


Q ss_pred             EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeecc-ccccccCCccccCCCCCccEEEccCc
Q 039564          150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSN-NFHGEIKEHKMECGFPKLRIVDLSNN  228 (485)
Q Consensus       150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n  228 (485)
                      .+.+|+++...|..|..+++|++|++++|++....+..+....++..+++.++ .+. .++...+......++.|++++|
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSS
T ss_pred             cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccc
Confidence            67789999888889999999999999999998877777777788889998765 454 4544322222346889999999


Q ss_pred             cCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCC-CcC
Q 039564          229 SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSS-NGF  307 (485)
Q Consensus       229 ~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l  307 (485)
                      .++ .++...|.                                                     ...++.+++++ |.+
T Consensus       165 ~i~-~i~~~~f~-----------------------------------------------------~~~L~~l~l~~~n~l  190 (350)
T 4ay9_X          165 GIQ-EIHNSAFN-----------------------------------------------------GTQLDELNLSDNNNL  190 (350)
T ss_dssp             CCC-EECTTSST-----------------------------------------------------TEEEEEEECTTCTTC
T ss_pred             ccc-CCChhhcc-----------------------------------------------------ccchhHHhhccCCcc
Confidence            998 56654332                                                     12378888875 556


Q ss_pred             cccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564          308 HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       308 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      ....+..|..+++|++|||++|+++...+..   +.+|+.|.+.++.-...+|. +..+++|+.++++++
T Consensus       191 ~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          191 EELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             cCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            6444456899999999999999999544444   45677777666644446774 788999999999765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=3.6e-22  Score=181.78  Aligned_cols=134  Identities=22%  Similarity=0.254  Sum_probs=81.0

Q ss_pred             CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCc-ccccCCCccccCcccccCCCCccEEEccC-CcccccCCccc
Q 039564           87 PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNN-LSGELPRCLGNFSDTFMNGSNLGIIDMSH-NLLQGRIPKSL  164 (485)
Q Consensus        87 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~  164 (485)
                      .+.++++|++++|.+++..+..|.++++|++|++++|. ++ .+|.      ..|..+++|++|++++ |.+++..+..|
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~------~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLES------HSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECT------TTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCH------hHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            44566666666666665555567777777777777775 55 3332      2334456677777776 66665555666


Q ss_pred             cCCCCCcEEEccCCcccCCcChhhhCCCCCC---EEEeecc-ccccccCCccccCCCCCcc-EEEccCccCC
Q 039564          165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELD---ILVLQSN-NFHGEIKEHKMECGFPKLR-IVDLSNNSFT  231 (485)
Q Consensus       165 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~  231 (485)
                      ..+++|++|++++|.+++ +|. |..+++|+   +|++++| .+.+..+..+  ..+++|+ .|++++|.++
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc
Confidence            666677777777766655 333 55666666   6666666 5553333333  4555666 6666666555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=4.8e-22  Score=182.29  Aligned_cols=180  Identities=19%  Similarity=0.198  Sum_probs=119.6

Q ss_pred             CCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCC
Q 039564          114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE  193 (485)
Q Consensus       114 ~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  193 (485)
                      ..++++++++.++ .+|..+.         +.++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~---------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   84 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP---------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE   84 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC---------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCeEEecCCCCcc-ccCCCCC---------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence            3556666666666 5554331         45666666666666555556666666666666666666655555666666


Q ss_pred             CCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcC
Q 039564          194 LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFP  273 (485)
Q Consensus       194 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  273 (485)
                      |++|++++|.+.+..+..+  ..+++|++|++++|                                             
T Consensus        85 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N---------------------------------------------  117 (251)
T 3m19_A           85 LGTLGLANNQLASLPLGVF--DHLTQLDKLYLGGN---------------------------------------------  117 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSS---------------------------------------------
T ss_pred             CCEEECCCCcccccChhHh--cccCCCCEEEcCCC---------------------------------------------
Confidence            6666666666653333333  34455555555554                                             


Q ss_pred             cccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCC
Q 039564          274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN  353 (485)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  353 (485)
                                                      .+++..+..+..+++|++|+|++|++++..+..|..+++|+.|++++|
T Consensus       118 --------------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A          118 --------------------------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             --------------------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             --------------------------------cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence                                            444344445667788888888888888666667888888888888888


Q ss_pred             cCcccCcccccCCCCCCEEeccCCccccc
Q 039564          354 WFSGQIPQQLTGLTFLEFFNVSHNNLTGP  382 (485)
Q Consensus       354 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  382 (485)
                      ++++..+..|..+++|+.|++++|++++.
T Consensus       166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            88877777788888888888888888765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=6.3e-26  Score=234.88  Aligned_cols=355  Identities=12%  Similarity=0.026  Sum_probs=159.8

Q ss_pred             CCCCCCEEECCCCcCCCCCCcccccCC-CCC-CcEEEccCCc-CcCcCCCCCCCCCCCCccEEEcCCCcccccCC-----
Q 039564           14 QQKHLKALDLSSNKLHGNIPKWLLNPS-MQN-FSYLNLSKNS-LTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP-----   85 (485)
Q Consensus        14 ~l~~L~~L~Ls~n~~~~~~p~~~~~~~-l~~-L~~L~Ls~n~-l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~-----   85 (485)
                      .+++|++|+|++|.+++..+..+.  . +++ |++|++++|. ++.. ..+.+...++.|++|++++|.+++...     
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~--~~~~~~L~~L~L~~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~  186 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLA--KARADDLETLKLDKCSGFTTD-GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE  186 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHH--HHHGGGCCEEEEESCEEEEHH-HHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHH--HhccccCcEEECcCCCCcCHH-HHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence            567777777777766655454444  2 233 7777776664 1110 000111123344777777777654421     


Q ss_pred             --CCCCCCcEEEccCCccc----ccCChhhcCCCCCCEEEcccCcccccCCCccccC--------------------ccc
Q 039564           86 --APPTKTRHYLVSKNNLT----GEIPSWICNLSSLYILDLSDNNLSGELPRCLGNF--------------------SDT  139 (485)
Q Consensus        86 --~~~~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--------------------~~~  139 (485)
                        ..+++|++|++++|.++    +.++..+.++++|++|++++|.+.+ +|..++.+                    ...
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence              12677777777777765    2334445567777777777776652 33222221                    011


Q ss_pred             ccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccCCccccCCCC
Q 039564          140 FMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIKEHKMECGFP  218 (485)
Q Consensus       140 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  218 (485)
                      +..+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|++.++...+.++...  ..++
T Consensus       266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~  342 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA--QYCK  342 (592)
T ss_dssp             CCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH--HHCT
T ss_pred             hhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH--HhCC
Confidence            222233333333332211 334444445555555555555432222 223445555555555222111111111  2345


Q ss_pred             CccEEEccC-----------ccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEee----e
Q 039564          219 KLRIVDLSN-----------NSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMS----N  283 (485)
Q Consensus       219 ~L~~L~l~~-----------n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~  283 (485)
                      +|+.|++++           +.+++.........+++|+.+++.....-...      ...++.....+..+.+.    .
T Consensus       343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~------~~~l~~~~~~L~~L~l~~~~~~  416 (592)
T 3ogk_B          343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES------LESIGTYLKNLCDFRLVLLDRE  416 (592)
T ss_dssp             TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH------HHHHHHHCCSCCEEEEEECSCC
T ss_pred             CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH------HHHHHhhCCCCcEEEEeecCCC
Confidence            555555552           33332111122233444444444211100000      00000001123333332    1


Q ss_pred             cCccc--------ccccccccccEEEcCCCc--CcccCchhhc-cCCCCCEEeCcCceecc-cCCccccCCCCCCEEECC
Q 039564          284 KGQML--------SYEKIPYILTAVILSSNG--FHGEIPTSIA-NLKGLQVLSLANNNLEG-HIPSCFGDLTKLESLDLS  351 (485)
Q Consensus       284 ~~~~~--------~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls  351 (485)
                      +....        .....++.|+.|++++|.  +++..+..+. .+++|++|+|++|++++ .++..+..+++|+.|+++
T Consensus       417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence            11111        001124556666665432  4433333333 25666666666666654 233344556666666666


Q ss_pred             CCcCccc-CcccccCCCCCCEEeccCCcccc
Q 039564          352 NNWFSGQ-IPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       352 ~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      +|.+++. ++.....+++|+.|++++|+++.
T Consensus       497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             SCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             CCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            6665533 23333456666666666666553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.9e-24  Score=208.13  Aligned_cols=266  Identities=18%  Similarity=0.178  Sum_probs=140.3

Q ss_pred             EEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCC----CCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEE
Q 039564           20 ALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQ----HPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL   95 (485)
Q Consensus        20 ~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~   95 (485)
                      ++++++|.+++.+|+.+.  ..++|++|++++|.+++..+    . .+......|++|++++|.+++             
T Consensus         2 ~~~ls~n~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~-------------   65 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTS--IPHGVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNSLGF-------------   65 (362)
T ss_dssp             EEECCCCTTCCHHHHHHT--SCTTCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSCGGG-------------
T ss_pred             ccccccccchHHHHHHHh--CCCCceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCCCCH-------------
Confidence            467888888877777665  45568888888888776533    1 112222133566666655554             


Q ss_pred             ccCCcccccCChhhcCC-----CCCCEEEcccCcccccCCCccccCcccccCC-CCccEEEccCCcccccCCccc----c
Q 039564           96 VSKNNLTGEIPSWICNL-----SSLYILDLSDNNLSGELPRCLGNFSDTFMNG-SNLGIIDMSHNLLQGRIPKSL----A  165 (485)
Q Consensus        96 l~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~----~  165 (485)
                              ..+..+..+     ++|++|++++|.+++..+..++.   .+..+ ++|++|++++|.+++..+..+    .
T Consensus        66 --------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~---~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~  134 (362)
T 3goz_A           66 --------KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK---TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS  134 (362)
T ss_dssp             --------SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH---HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHT
T ss_pred             --------HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH---HHHhCCCCccEEECcCCcCCcHHHHHHHHHHH
Confidence                    333333332     55555555555555333332221   12223 455555555555554333322    2


Q ss_pred             C-CCCCcEEEccCCcccCCc----ChhhhCCC-CCCEEEeeccccccccCCccc--cCCC-CCccEEEccCccCCccCCh
Q 039564          166 N-CAVLEIIDLGNNQIIDTF----PAWLGTLS-ELDILVLQSNNFHGEIKEHKM--ECGF-PKLRIVDLSNNSFTGNLPS  236 (485)
Q Consensus       166 ~-l~~L~~L~Ls~n~l~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~--~~~l-~~L~~L~l~~n~l~~~~~~  236 (485)
                      . .++|++|++++|.+++..    +..+..++ +|++|++++|.+.+..+..+.  ...+ ++|+.|++++|.+.+....
T Consensus       135 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~  214 (362)
T 3goz_A          135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA  214 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred             hCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH
Confidence            2 245666666666555322    22233443 666666666665543332220  0123 3666666666666531111


Q ss_pred             hhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCc----
Q 039564          237 KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIP----  312 (485)
Q Consensus       237 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----  312 (485)
                      .+...+.                                                ...+.|+.|++++|.+++..+    
T Consensus       215 ~l~~~l~------------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~l~  246 (362)
T 3goz_A          215 ELAYIFS------------------------------------------------SIPNHVVSLNLCLNCLHGPSLENLK  246 (362)
T ss_dssp             HHHHHHH------------------------------------------------HSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred             HHHHHHh------------------------------------------------cCCCCceEEECcCCCCCcHHHHHHH
Confidence            1100000                                                002236777777777765433    


Q ss_pred             hhhccCCCCCEEeCcCceeccc-------CCccccCCCCCCEEECCCCcCcccCc
Q 039564          313 TSIANLKGLQVLSLANNNLEGH-------IPSCFGDLTKLESLDLSNNWFSGQIP  360 (485)
Q Consensus       313 ~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~Ls~N~l~~~~p  360 (485)
                      ..+..+++|++|+|++|.+.+.       ++..+..+++|+.||+++|.+....+
T Consensus       247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            2345667888888888874432       23456677888888888888876533

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.5e-22  Score=182.78  Aligned_cols=196  Identities=23%  Similarity=0.289  Sum_probs=112.7

Q ss_pred             CCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCc-ccccCCccccCCCCCcEEEccC-CcccCCcChhhhCC
Q 039564          114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL-LQGRIPKSLANCAVLEIIDLGN-NQIIDTFPAWLGTL  191 (485)
Q Consensus       114 ~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l  191 (485)
                      +|++|++++|++++ +|.      ..|..+++|++|++++|. +++..+..|..+++|++|++++ |.++...+..|..+
T Consensus        32 ~l~~L~l~~n~l~~-i~~------~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l  104 (239)
T 2xwt_C           32 STQTLKLIETHLRT-IPS------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL  104 (239)
T ss_dssp             TCCEEEEESCCCSE-ECT------TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred             cccEEEEeCCcceE-ECH------HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence            67777777777763 332      234445677777777775 6655555667777777777776 67766655666677


Q ss_pred             CCCCEEEeeccccccccCCccccCCCCCcc---EEEccCc-cCCccCChhhhcccccceeccccchhhhhcccccccccc
Q 039564          192 SELDILVLQSNNFHGEIKEHKMECGFPKLR---IVDLSNN-SFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFD  267 (485)
Q Consensus       192 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  267 (485)
                      ++|++|++++|.+.+ +|. +  ..+++|+   +|++++| .+. .++...|..+                         
T Consensus       105 ~~L~~L~l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l-------------------------  154 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMT-SIPVNAFQGL-------------------------  154 (239)
T ss_dssp             TTCCEEEEEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCC-EECTTTTTTT-------------------------
T ss_pred             CCCCEEeCCCCCCcc-ccc-c--ccccccccccEEECCCCcchh-hcCcccccch-------------------------
Confidence            777777777777663 444 3  4555555   6666666 555 3333222221                         


Q ss_pred             cccCcCcccceEEeeecCccccccccccccc-EEEcCCCcCcccCchhhccCCCCCEEeCcCce-ecccCCccccCC-CC
Q 039564          268 FYGYFPHYYYSLTMSNKGQMLSYEKIPYILT-AVILSSNGFHGEIPTSIANLKGLQVLSLANNN-LEGHIPSCFGDL-TK  344 (485)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~  344 (485)
                                                 +.|+ .|++++|+++...+..+.. ++|++|++++|+ +++..+..|..+ ++
T Consensus       155 ---------------------------~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~  206 (239)
T 2xwt_C          155 ---------------------------CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG  206 (239)
T ss_dssp             ---------------------------BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred             ---------------------------hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccC
Confidence                                       2255 5666666665222222333 556666666663 654445556666 66


Q ss_pred             CCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564          345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      |+.|++++|++++ +|..  .+++|+.|+++++
T Consensus       207 L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          207 PSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            6666666666653 3322  4455566665554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=1.1e-24  Score=225.61  Aligned_cols=354  Identities=11%  Similarity=0.017  Sum_probs=200.0

Q ss_pred             CCEEECCCCc-CCC-CCCcccccCCCCCCcEEEccCCcCcCcCCC--CCCCCCCCCccEEEcCCCcccccCC----C---
Q 039564           18 LKALDLSSNK-LHG-NIPKWLLNPSMQNFSYLNLSKNSLTGFDQH--PSVFPWSSGEFTLDLSSNFLQGPIP----A---   86 (485)
Q Consensus        18 L~~L~Ls~n~-~~~-~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~lL~~L~l~~n~l~~~~~----~---   86 (485)
                      |++|+|++|. +.. .++....  .+++|++|+|++|.+++....  +.+....+.|++|++++|.+++...    .   
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVT--HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR  217 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHH--HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred             CcEEECcCCCCcCHHHHHHHHh--hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence            6666666664 211 1111122  456666666666665433110  0011223334666666666652211    1   


Q ss_pred             CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccc---ccCCCcc----------------ccCcccccCCCCcc
Q 039564           87 PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS---GELPRCL----------------GNFSDTFMNGSNLG  147 (485)
Q Consensus        87 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l----------------~~l~~~~~~l~~L~  147 (485)
                      .+++|++|++++|.+.+ +|..+..+++|+.|+++.....   +..+..+                ..++..+..+++|+
T Consensus       218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~  296 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR  296 (592)
T ss_dssp             HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred             hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence            15666666666666653 4555566666666666532111   0000000                01112344567899


Q ss_pred             EEEccCCcccccCC-ccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeec-----------cccccccCCccccC
Q 039564          148 IIDMSHNLLQGRIP-KSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQS-----------NNFHGEIKEHKMEC  215 (485)
Q Consensus       148 ~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~  215 (485)
                      +|++++|.+++... ..+..+++|++|+++++.....++..+..+++|++|++++           +.+++.....+ ..
T Consensus       297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-~~  375 (592)
T 3ogk_B          297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQ  375 (592)
T ss_dssp             EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-HH
T ss_pred             EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-Hh
Confidence            99999998765443 3457888999999984433233344456788899999983           44443211111 13


Q ss_pred             CCCCccEEEccCccCCccCChhhhcccccceeccccchh---hhhcccccccccc-cccCcCcccceEEeeecC--ccc-
Q 039564          216 GFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLR---YMRNFLSSYFSFD-FYGYFPHYYYSLTMSNKG--QML-  288 (485)
Q Consensus       216 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--~~~-  288 (485)
                      .+++|++|+++.|.+++..+..+...+++|+.+++..+.   .+...... .+.. .... -..+..+++..+.  ... 
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~~~~~~~-~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVRSLLIG-CKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHHHHHHHH-CTTCCEEEEECCGGGCCHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH-HHHHHHHHh-CCCCCEEEEecCCCCccHH
Confidence            578888898888888765554444457777777775322   11100000 0000 0000 1234555554311  111 


Q ss_pred             ---ccccccccccEEEcCCCcCccc-CchhhccCCCCCEEeCcCceeccc-CCccccCCCCCCEEECCCCcCcccCcccc
Q 039564          289 ---SYEKIPYILTAVILSSNGFHGE-IPTSIANLKGLQVLSLANNNLEGH-IPSCFGDLTKLESLDLSNNWFSGQIPQQL  363 (485)
Q Consensus       289 ---~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  363 (485)
                         .....++.|+.|++++|++++. ++..+..+++|++|+|++|.+++. ++..+..+++|+.|++++|+++......+
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence               1122367899999999999863 455668899999999999998754 44455679999999999999987644433


Q ss_pred             -cCCCCCCEEeccCC
Q 039564          364 -TGLTFLEFFNVSHN  377 (485)
Q Consensus       364 -~~l~~L~~L~l~~N  377 (485)
                       ..++.+....+..+
T Consensus       534 ~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          534 QMARPYWNIELIPSR  548 (592)
T ss_dssp             GGCCTTEEEEEECCC
T ss_pred             HHhCCCcEEEEecCc
Confidence             45777766666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=6.4e-22  Score=187.00  Aligned_cols=79  Identities=23%  Similarity=0.352  Sum_probs=47.9

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                      |+.|++++|.+++ ++. +..+++|++|++++|++++..+  +..+++|+.|++++|++++..+  +..+++|+.|++++
T Consensus       153 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          153 LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (308)
T ss_dssp             CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccC
Confidence            5555555555553 222 5566666777777766664332  5666667777777776664332  56666777777777


Q ss_pred             Ccccc
Q 039564          377 NNLTG  381 (485)
Q Consensus       377 N~l~~  381 (485)
                      |++++
T Consensus       227 N~i~~  231 (308)
T 1h6u_A          227 QTITN  231 (308)
T ss_dssp             EEEEC
T ss_pred             Ceeec
Confidence            76654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.6e-22  Score=191.67  Aligned_cols=229  Identities=21%  Similarity=0.216  Sum_probs=177.5

Q ss_pred             CCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccc--cCCCCCcEEEccCCcccCCcC----
Q 039564          112 LSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSL--ANCAVLEIIDLGNNQIIDTFP----  185 (485)
Q Consensus       112 l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----  185 (485)
                      ...++.+.+.++.+....-..+    ..+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+.+..+    
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  138 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGA----LRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE  138 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHH----HHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred             hcceeEEEEeCCcCCHHHHHHH----HHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence            3457888888877652211011    011123679999999999999999888  899999999999999987555    


Q ss_pred             hhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCcc--CC-hhhhcccccceeccccchhhhhccccc
Q 039564          186 AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN--LP-SKYFQCWNAMKFVNASQLRYMRNFLSS  262 (485)
Q Consensus       186 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~  262 (485)
                      ..+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+.  ++ ..++.                      
T Consensus       139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~----------------------  194 (310)
T 4glp_A          139 LQQWLKPGLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLMAALCPH----------------------  194 (310)
T ss_dssp             HHTTBCSCCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHHTTSCTT----------------------
T ss_pred             HHhhhccCCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhhHHHhhh----------------------
Confidence            345679999999999999987777777  7899999999999997632  11 11011                      


Q ss_pred             ccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCch----hhccCCCCCEEeCcCceecccCCcc
Q 039564          263 YFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT----SIANLKGLQVLSLANNNLEGHIPSC  338 (485)
Q Consensus       263 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~  338 (485)
                                                    .++.|+.|++++|+++ .++.    .+..+++|++|+|++|++++..|..
T Consensus       195 ------------------------------~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          195 ------------------------------KFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             ------------------------------SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             ------------------------------cCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence                                          1345888999999997 3333    3578899999999999999887877


Q ss_pred             ccCC---CCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 039564          339 FGDL---TKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGL  403 (485)
Q Consensus       339 ~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~l  403 (485)
                      +..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |....++.+..+.+.+|+..
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence            7776   69999999999999 6777664  8999999999999974 44456788888999999764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.6e-21  Score=178.82  Aligned_cols=181  Identities=24%  Similarity=0.259  Sum_probs=146.6

Q ss_pred             CCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCC
Q 039564           89 TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCA  168 (485)
Q Consensus        89 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  168 (485)
                      ...++++++++.++ .+|..+.  ++++.|++++|.+++..|..       |..+++|++|++++|.+++..+..|..++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDAT-------FRGLTKLTWLNLDYNQLQTLSAGVFDDLT   83 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTT-------TTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhH-------hcCcccCCEEECCCCcCCccCHhHhccCC
Confidence            35678999999998 5776654  68999999999999655543       45569999999999999988888899999


Q ss_pred             CCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceec
Q 039564          169 VLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV  248 (485)
Q Consensus       169 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l  248 (485)
                      +|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+  ..+++|++|++++|.++ .               
T Consensus        84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~-~---------------  145 (251)
T 3m19_A           84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQ-S---------------  145 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-C---------------
T ss_pred             cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCcCC-c---------------
Confidence            99999999999998888899999999999999999985544444  56777777777777665 2               


Q ss_pred             cccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcC
Q 039564          249 NASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLAN  328 (485)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  328 (485)
                                                                                   ..+..+..+++|++|+|++
T Consensus       146 -------------------------------------------------------------~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A          146 -------------------------------------------------------------IPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             -------------------------------------------------------------CCTTTTTTCTTCCEEECCS
T ss_pred             -------------------------------------------------------------cCHHHcCcCcCCCEEECCC
Confidence                                                                         2333456677888888888


Q ss_pred             ceecccCCccccCCCCCCEEECCCCcCccc
Q 039564          329 NNLEGHIPSCFGDLTKLESLDLSNNWFSGQ  358 (485)
Q Consensus       329 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  358 (485)
                      |++++..+..+..+++|+.|++++|.+...
T Consensus       165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          165 NQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            888876677788888888888888888754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.7e-23  Score=200.84  Aligned_cols=248  Identities=17%  Similarity=0.174  Sum_probs=150.9

Q ss_pred             cEEEcCCCcccccCCCCC--CCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccccc-CCCccccCcccccCCCCcc
Q 039564           71 FTLDLSSNFLQGPIPAPP--TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE-LPRCLGNFSDTFMNGSNLG  147 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~~~~~l~~L~  147 (485)
                      +.++++++.+.......+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..       +..+++|+
T Consensus        50 ~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-------~~~~~~L~  121 (336)
T 2ast_B           50 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-------LSQCSKLQ  121 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-------HTTBCCCS
T ss_pred             eeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-------HhhCCCCC
Confidence            555555555442111112  5566666666666644443 44567777777777766533 3322       33346777


Q ss_pred             EEEccCCcccccCCccccCCCCCcEEEccCC-cccC-CcChhhhCCCCCCEEEeecc-ccccc-cCCccccCCCC-CccE
Q 039564          148 IIDMSHNLLQGRIPKSLANCAVLEIIDLGNN-QIID-TFPAWLGTLSELDILVLQSN-NFHGE-IKEHKMECGFP-KLRI  222 (485)
Q Consensus       148 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~-~L~~  222 (485)
                      +|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+.+. ++..+  ..++ +|++
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~  199 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQ  199 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCE
Confidence            7777777776666666777777777777777 4544 24555667777777777777 66543 33333  4566 7777


Q ss_pred             EEccCcc--CC-ccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccE
Q 039564          223 VDLSNNS--FT-GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTA  299 (485)
Q Consensus       223 L~l~~n~--l~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~  299 (485)
                      |++++|.  ++ +.++. .+.                                                    .++.|+.
T Consensus       200 L~l~~~~~~~~~~~l~~-~~~----------------------------------------------------~~~~L~~  226 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLST-LVR----------------------------------------------------RCPNLVH  226 (336)
T ss_dssp             EECCSCGGGSCHHHHHH-HHH----------------------------------------------------HCTTCSE
T ss_pred             EEeCCCcccCCHHHHHH-HHh----------------------------------------------------hCCCCCE
Confidence            7777773  32 11111 011                                                    1334778


Q ss_pred             EEcCCCc-CcccCchhhccCCCCCEEeCcCce-ecccCCccccCCCCCCEEECCCCcCcccCcccccCC-CCCCEEeccC
Q 039564          300 VILSSNG-FHGEIPTSIANLKGLQVLSLANNN-LEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGL-TFLEFFNVSH  376 (485)
Q Consensus       300 L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~  376 (485)
                      |++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++..   .+..+ ..+..|++++
T Consensus       227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~  302 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINC  302 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESC
T ss_pred             EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEec
Confidence            8888887 666677778888888899988885 32222235778888999999888 4432   22222 2356666888


Q ss_pred             CcccccCCC
Q 039564          377 NNLTGPIPE  385 (485)
Q Consensus       377 N~l~~~~p~  385 (485)
                      |.+++..|.
T Consensus       303 n~l~~~~~~  311 (336)
T 2ast_B          303 SHFTTIARP  311 (336)
T ss_dssp             CCSCCTTCS
T ss_pred             ccCccccCC
Confidence            888877664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=2.7e-23  Score=199.39  Aligned_cols=229  Identities=17%  Similarity=0.227  Sum_probs=144.5

Q ss_pred             cEEEcCCCcccccCCCC--CCCCcEEEccCCccccc-CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCcc
Q 039564           71 FTLDLSSNFLQGPIPAP--PTKTRHYLVSKNNLTGE-IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLG  147 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~  147 (485)
                      +.|++++|.+.+..+..  +++|++|++++|.+.+. ++..+..+++|++|++++|.+++..|..++       .+++|+
T Consensus        73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-------~~~~L~  145 (336)
T 2ast_B           73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-------KNSNLV  145 (336)
T ss_dssp             SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-------TCTTCS
T ss_pred             eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-------cCCCCC
Confidence            55555555554443333  45666666666666544 666677777777777777777655554333       347777


Q ss_pred             EEEccCC-ccccc-CCccccCCCCCcEEEccCC-cccCC-cChhhhCCC-CCCEEEeeccc--cc-cccCCccccCCCCC
Q 039564          148 IIDMSHN-LLQGR-IPKSLANCAVLEIIDLGNN-QIIDT-FPAWLGTLS-ELDILVLQSNN--FH-GEIKEHKMECGFPK  219 (485)
Q Consensus       148 ~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~l~~  219 (485)
                      +|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|.  +. +.++..+  ..+++
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~  223 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--RRCPN  223 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--HHCTT
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--hhCCC
Confidence            7777777 56542 5555667777888888877 76543 455667777 78888888773  43 2344433  45777


Q ss_pred             ccEEEccCcc-CCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCccccccccccccc
Q 039564          220 LRIVDLSNNS-FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILT  298 (485)
Q Consensus       220 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~  298 (485)
                      |+.|++++|. +++..+.. +..                                                    ++.|+
T Consensus       224 L~~L~l~~~~~l~~~~~~~-l~~----------------------------------------------------l~~L~  250 (336)
T 2ast_B          224 LVHLDLSDSVMLKNDCFQE-FFQ----------------------------------------------------LNYLQ  250 (336)
T ss_dssp             CSEEECTTCTTCCGGGGGG-GGG----------------------------------------------------CTTCC
T ss_pred             CCEEeCCCCCcCCHHHHHH-HhC----------------------------------------------------CCCCC
Confidence            8888888777 44332221 111                                                    23477


Q ss_pred             EEEcCCCc-CcccCchhhccCCCCCEEeCcCceecccCCccccCC-CCCCEEECCCCcCcccCcccccC
Q 039564          299 AVILSSNG-FHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDL-TKLESLDLSNNWFSGQIPQQLTG  365 (485)
Q Consensus       299 ~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~  365 (485)
                      .|++++|. +.......+..+++|++|++++| ++.   ..+..+ .++..|++++|.+++..|..++.
T Consensus       251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            77777774 33222235778899999999998 432   233333 34777789999999888877664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=9.4e-24  Score=206.57  Aligned_cols=189  Identities=21%  Similarity=0.218  Sum_probs=119.6

Q ss_pred             cCCCCCCEEEcccCccccc----CCCccccCcccccCCCCccEEEccCCcccccCCcccc----CC---------CCCcE
Q 039564          110 CNLSSLYILDLSDNNLSGE----LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA----NC---------AVLEI  172 (485)
Q Consensus       110 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l---------~~L~~  172 (485)
                      ..+++|++|+|++|.+++.    +|..       +..+++|++|++++|.+++..+..+.    .+         ++|++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~  163 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDF-------LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS  163 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHH-------HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHH-------HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence            5566666666666666531    2222       23346666666666666533332222    22         67777


Q ss_pred             EEccCCccc-CCcC---hhhhCCCCCCEEEeecccccc-----ccCCccccCCCCCccEEEccCccCCc----cCChhhh
Q 039564          173 IDLGNNQII-DTFP---AWLGTLSELDILVLQSNNFHG-----EIKEHKMECGFPKLRIVDLSNNSFTG----NLPSKYF  239 (485)
Q Consensus       173 L~Ls~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~  239 (485)
                      |++++|.++ ...+   ..+..+++|++|++++|.+..     ..+..+  ..+++|+.|++++|.++.    .++.. +
T Consensus       164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l  240 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALAIA-L  240 (386)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHHHH-G
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCCcHHHHHHHHH-H
Confidence            777777775 2333   355667777777777777652     222233  456777888888777641    22211 1


Q ss_pred             cccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc----Cchhh
Q 039564          240 QCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE----IPTSI  315 (485)
Q Consensus       240 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~  315 (485)
                      .                                                    .++.|+.|+|++|.+++.    ++..+
T Consensus       241 ~----------------------------------------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          241 K----------------------------------------------------SWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             G----------------------------------------------------GCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             c----------------------------------------------------cCCCcCEEECCCCCCchhhHHHHHHHH
Confidence            1                                                    123477788888887754    45566


Q ss_pred             c--cCCCCCEEeCcCceecc----cCCccc-cCCCCCCEEECCCCcCcccCc
Q 039564          316 A--NLKGLQVLSLANNNLEG----HIPSCF-GDLTKLESLDLSNNWFSGQIP  360 (485)
Q Consensus       316 ~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~p  360 (485)
                      .  .+++|++|+|++|.+++    .+|..+ ..+++|++|++++|.+++..+
T Consensus       269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            3  38999999999999987    477776 668999999999999997664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=1.3e-21  Score=188.46  Aligned_cols=246  Identities=20%  Similarity=0.236  Sum_probs=169.8

Q ss_pred             cEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCC-ccccCCCCC
Q 039564           92 RHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP-KSLANCAVL  170 (485)
Q Consensus        92 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L  170 (485)
                      ++++.++++++ .+|..+  .+++++|+|++|+++ .+|.      ++|.++++|++|+|++|.+.+.+| ..|.+++++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQK------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECT------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCH------HHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence            56777788887 567655  357888888888887 5554      446667888888888888765554 457777776


Q ss_pred             cE-EEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCc-cCCccCChhhhcccccceec
Q 039564          171 EI-IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNN-SFTGNLPSKYFQCWNAMKFV  248 (485)
Q Consensus       171 ~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~l  248 (485)
                      .+ +.+++|++....|.+|..+++|++|++++|.+....+..+  ....++..+++.++ .+. .++...|..       
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~-~l~~~~f~~-------  151 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIH-TIERNSFVG-------  151 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCC-EECTTSSTT-------
T ss_pred             hhhhcccCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccc-cccccchhh-------
Confidence            64 5666788877777888888888888888888874444333  44556777777653 444 444332221       


Q ss_pred             cccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcC
Q 039564          249 NASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLAN  328 (485)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  328 (485)
                                                                  ....++.|++++|+++ .++.......+|++|++++
T Consensus       152 --------------------------------------------~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          152 --------------------------------------------LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             --------------------------------------------SBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTT
T ss_pred             --------------------------------------------cchhhhhhcccccccc-CCChhhccccchhHHhhcc
Confidence                                                        1234888999999999 4555555667899999986


Q ss_pred             -ceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          329 -NNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGK  406 (485)
Q Consensus       329 -N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~  406 (485)
                       |.++...++.|..+++|+.||+++|+|+...+..|   ..|+.|.+.++.-...+|....++.+..+.+ .+++.|.+
T Consensus       187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c~~  261 (350)
T 4ay9_X          187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHCCA  261 (350)
T ss_dssp             CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHHHH
T ss_pred             CCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccccc
Confidence             56664445678999999999999999995444444   4566666655554456676566666666655 46666643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.2e-21  Score=183.32  Aligned_cols=198  Identities=22%  Similarity=0.275  Sum_probs=161.6

Q ss_pred             hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCC
Q 039564           12 LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTK   90 (485)
Q Consensus        12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~   90 (485)
                      +.++++|++|++++|.+. .+| .+.  .+++|++|++++|.+++..+   +..+. .|++|++++|.+++...-. +++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~--~l~~L~~L~L~~n~i~~~~~---~~~l~-~L~~L~L~~n~l~~~~~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQ--YLNNLIGLELKDNQITDLAP---LKNLT-KITELELSGNPLKNVSAIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGG---GTTCC-SCCEEECCSCCCSCCGGGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhh--ccCCCCEEEccCCcCCCChh---HccCC-CCCEEEccCCcCCCchhhcCCCC
Confidence            456889999999999998 456 577  79999999999999987643   34444 4599999999998753222 899


Q ss_pred             CcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCC
Q 039564           91 TRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVL  170 (485)
Q Consensus        91 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  170 (485)
                      |++|++++|.+++ ++. +..+++|++|++++|.+++ ++.        +..+++|+.|++++|.+++..+  +..+++|
T Consensus       109 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~--------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L  175 (308)
T 1h6u_A          109 IKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP--------LAGLTNLQYLSIGNAQVSDLTP--LANLSKL  175 (308)
T ss_dssp             CCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG--------GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             CCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc--------ccCCCCccEEEccCCcCCCChh--hcCCCCC
Confidence            9999999999985 443 8999999999999999984 332        3456899999999999985433  8899999


Q ss_pred             cEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564          171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK  237 (485)
Q Consensus       171 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  237 (485)
                      ++|++++|.+++..+  +..+++|++|++++|.+.+..+  +  ..+++|+.|++++|.++ ..|..
T Consensus       176 ~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l--~~l~~L~~L~l~~N~i~-~~~~~  235 (308)
T 1h6u_A          176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L--ANTSNLFIVTLTNQTIT-NQPVF  235 (308)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--G--TTCTTCCEEEEEEEEEE-CCCEE
T ss_pred             CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--c--cCCCCCCEEEccCCeee-cCCee
Confidence            999999999977654  8899999999999999985543  4  67899999999999997 45543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=6.2e-21  Score=169.67  Aligned_cols=152  Identities=22%  Similarity=0.191  Sum_probs=91.4

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      +.++++++.++......++++++|++++|.+++..+..|.++++|++|++++|.++ .+|.      ..|..+++|++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~------~~~~~l~~L~~L~   82 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPN------GVFNKLTSLTYLN   82 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccCh------hhcCCCCCcCEEE
Confidence            45555555555444334556666666666666555555666777777777777666 3332      2234456677777


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF  230 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  230 (485)
                      +++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+  ..+++|+.|++++|.+
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCB
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCe
Confidence            77777665555556666677777777776666555556666666666666666664333333  4556666666666654


Q ss_pred             C
Q 039564          231 T  231 (485)
Q Consensus       231 ~  231 (485)
                      .
T Consensus       161 ~  161 (208)
T 2o6s_A          161 D  161 (208)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.84  E-value=3.7e-23  Score=214.19  Aligned_cols=351  Identities=13%  Similarity=0.043  Sum_probs=194.8

Q ss_pred             hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCC-cCcCcCCCCCCCCCCCCccEEEcCCCcccccC------
Q 039564           12 LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKN-SLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI------   84 (485)
Q Consensus        12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~------   84 (485)
                      ...+++|++|+|++|.+++..+..+.. .+++|++|++++| .++.... +.+...++.|++|++++|.+++..      
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGL-AAIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHH-HHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHH-HHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            456788999999998887766665542 4788899999888 4443111 123323444588888888876533      


Q ss_pred             -CCCCCCCcEEEccCCc--ccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCc-----
Q 039564           85 -PAPPTKTRHYLVSKNN--LTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL-----  155 (485)
Q Consensus        85 -~~~~~~L~~L~l~~n~--l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~-----  155 (485)
                       +..+++|++|++++|.  +.. .++..+..+++|++|++++|...+.+|..+.       .+++|++|+++.+.     
T Consensus       179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~-------~~~~L~~L~l~~~~~~~~~  251 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ-------RAPQLEELGTGGYTAEVRP  251 (594)
T ss_dssp             SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH-------HCTTCSEEECSBCCCCCCH
T ss_pred             HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh-------cCCcceEcccccccCccch
Confidence             2236788888888886  221 1222234568888888888722112332222       22444444433221     


Q ss_pred             ---------------------cc----ccCCccccCCCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccC
Q 039564          156 ---------------------LQ----GRIPKSLANCAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIK  209 (485)
Q Consensus       156 ---------------------i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~  209 (485)
                                           +.    +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.....
T Consensus       252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l  330 (594)
T 2p1m_B          252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGL  330 (594)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred             hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHH
Confidence                                 11    1233333356777777777776543222 22446777777777776 321111


Q ss_pred             CccccCCCCCccEEEccC---------ccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEE
Q 039564          210 EHKMECGFPKLRIVDLSN---------NSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLT  280 (485)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (485)
                      ..+. ..+++|+.|++++         +.+++.....+...+++|+.+.+..........      ..+....+.+..+.
T Consensus       331 ~~l~-~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~------~~l~~~~~~L~~L~  403 (594)
T 2p1m_B          331 EVLA-STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL------ITIARNRPNMTRFR  403 (594)
T ss_dssp             HHHH-HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHH------HHHHHHCTTCCEEE
T ss_pred             HHHH-HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHH------HHHHhhCCCcceeE
Confidence            1111 2356677776632         333322112222334555555332211100000      00000001233344


Q ss_pred             eee------cCccc--------ccccccccccEEEcCCCcCcccCchhhcc-CCCCCEEeCcCceecccCCccc-cCCCC
Q 039564          281 MSN------KGQML--------SYEKIPYILTAVILSSNGFHGEIPTSIAN-LKGLQVLSLANNNLEGHIPSCF-GDLTK  344 (485)
Q Consensus       281 ~~~------~~~~~--------~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~  344 (485)
                      +..      +....        .....++.|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++
T Consensus       404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  482 (594)
T 2p1m_B          404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS  482 (594)
T ss_dssp             EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred             eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence            431      11110        0122356799999977 666555555555 8889999999998876555544 66889


Q ss_pred             CCEEECCCCcCcccCcc-cccCCCCCCEEeccCCccc
Q 039564          345 LESLDLSNNWFSGQIPQ-QLTGLTFLEFFNVSHNNLT  380 (485)
Q Consensus       345 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~N~l~  380 (485)
                      |+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus       483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            99999999988654433 4455889999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.9e-20  Score=164.46  Aligned_cols=86  Identities=17%  Similarity=0.210  Sum_probs=46.9

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV  223 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  223 (485)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+  ..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEE
Confidence            455666666666654444455566666666666666655545555555666666666665553333223  344555555


Q ss_pred             EccCccCC
Q 039564          224 DLSNNSFT  231 (485)
Q Consensus       224 ~l~~n~l~  231 (485)
                      ++++|.++
T Consensus       106 ~L~~N~l~  113 (208)
T 2o6s_A          106 ALNTNQLQ  113 (208)
T ss_dssp             ECCSSCCC
T ss_pred             EcCCCcCc
Confidence            55555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=1.6e-23  Score=216.97  Aligned_cols=376  Identities=15%  Similarity=0.088  Sum_probs=241.8

Q ss_pred             hhhhCCCCCCEEECCCCcCC---CCCCcc------------cccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEE
Q 039564           10 NFLKQQKHLKALDLSSNKLH---GNIPKW------------LLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLD   74 (485)
Q Consensus        10 ~~~~~l~~L~~L~Ls~n~~~---~~~p~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~   74 (485)
                      ..+..+++|++|+++++...   +..|..            ..  .+++|++|++++|.+++.... .+....+.|++|+
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~--~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~  136 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS--SYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLV  136 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH--HCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEE
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHH--hCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEe
Confidence            36778999999999998632   122322            22  578999999999988764332 2322244559999


Q ss_pred             cCCC-ccccc-CCC---CCCCCcEEEccCCcccccCChhhc----CCCCCCEEEcccCcccccCC-CccccCcccccCCC
Q 039564           75 LSSN-FLQGP-IPA---PPTKTRHYLVSKNNLTGEIPSWIC----NLSSLYILDLSDNNLSGELP-RCLGNFSDTFMNGS  144 (485)
Q Consensus        75 l~~n-~l~~~-~~~---~~~~L~~L~l~~n~l~~~~p~~~~----~l~~L~~L~L~~n~l~~~~p-~~l~~l~~~~~~l~  144 (485)
                      +++| .++.. ++.   .+++|++|++++|.+++..+..+.    .+++|++|++++|. . .++ ..+.   ..+..++
T Consensus       137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~---~l~~~~~  211 (594)
T 2p1m_B          137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALE---RLVTRCP  211 (594)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHH---HHHHHCT
T ss_pred             CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHH---HHHHhCC
Confidence            9999 55432 111   289999999999998865554443    67799999999996 1 222 1221   1123458


Q ss_pred             CccEEEccCCcccccCCccccCCCCCcEEEccCCc--------------------------cc----CCcChhhhCCCCC
Q 039564          145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ--------------------------II----DTFPAWLGTLSEL  194 (485)
Q Consensus       145 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--------------------------l~----~~~~~~~~~l~~L  194 (485)
                      +|++|++++|...+.++..+..+++|++|+++.+.                          +.    ..++..+..+++|
T Consensus       212 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L  291 (594)
T 2p1m_B          212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRL  291 (594)
T ss_dssp             TCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTC
T ss_pred             CCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCC
Confidence            99999999993333467777788888888865442                          11    1233334467999


Q ss_pred             CEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccch--------hhhhccccccccc
Q 039564          195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQL--------RYMRNFLSSYFSF  266 (485)
Q Consensus       195 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~--------~~~~~~~~~~~~~  266 (485)
                      ++|++++|.+.+.....+ ...+++|+.|++++| +.......+...+++|+.+++..+        ..+...     +.
T Consensus       292 ~~L~L~~~~l~~~~l~~~-~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~-----~l  364 (594)
T 2p1m_B          292 TTLNLSYATVQSYDLVKL-LCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-----GL  364 (594)
T ss_dssp             CEEECTTCCCCHHHHHHH-HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH-----HH
T ss_pred             CEEEccCCCCCHHHHHHH-HhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH-----HH
Confidence            999999999764432221 157899999999988 442222233445788888876321        111100     00


Q ss_pred             cccc-CcCcccceEEeeecCccccc----ccccccccEEEcC--C----CcCccc-----CchhhccCCCCCEEeCcCce
Q 039564          267 DFYG-YFPHYYYSLTMSNKGQMLSY----EKIPYILTAVILS--S----NGFHGE-----IPTSIANLKGLQVLSLANNN  330 (485)
Q Consensus       267 ~~~~-~~~~~~~~l~~~~~~~~~~~----~~~~~~L~~L~Ls--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~  330 (485)
                      ..+. .. ..+..+....+......    ...++.|+.|+++  +    +.+++.     ++..+..+++|+.|+|++ .
T Consensus       365 ~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~  442 (594)
T 2p1m_B          365 VSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L  442 (594)
T ss_dssp             HHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred             HHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence            0000 01 23444544444443221    2236789999998  4    556521     223367789999999988 6


Q ss_pred             ecccCCccccC-CCCCCEEECCCCcCcccCcccc-cCCCCCCEEeccCCcccccCCC--CCCCCCCCCCCCCCCCC
Q 039564          331 LEGHIPSCFGD-LTKLESLDLSNNWFSGQIPQQL-TGLTFLEFFNVSHNNLTGPIPE--ANQFPTFDSSSFDGNSG  402 (485)
Q Consensus       331 l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~--~~~~~~l~~~~~~~n~~  402 (485)
                      +++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++....  ...++.++.+++.+|+.
T Consensus       443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            66555555555 8999999999999987655544 6689999999999998643221  12356677777777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=8e-20  Score=185.25  Aligned_cols=136  Identities=30%  Similarity=0.395  Sum_probs=79.4

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      ++|++++|.+++..+..+++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. ++         .+|+.|+
T Consensus        62 ~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---------~~L~~L~  126 (571)
T 3cvr_A           62 SELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP---------ASLKHLD  126 (571)
T ss_dssp             SEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC---------TTCCEEE
T ss_pred             cEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh---------cCCCEEE
Confidence            44555555444422222445555555555555 344   335666677777766663 554 21         1666777


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF  230 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  230 (485)
                      +++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+.+ +|. +  .  ++|+.|++++|.+
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--P--ESLEALDVSTNLL  192 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--C--TTCCEEECCSSCC
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--h--CCCCEEECcCCCC
Confidence            77777664 444   45667777777777755 333   45677777777777764 555 4  2  6777777777777


Q ss_pred             CccCCh
Q 039564          231 TGNLPS  236 (485)
Q Consensus       231 ~~~~~~  236 (485)
                      + .+|.
T Consensus       193 ~-~lp~  197 (571)
T 3cvr_A          193 E-SLPA  197 (571)
T ss_dssp             S-SCCC
T ss_pred             C-chhh
Confidence            6 5553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.4e-19  Score=183.41  Aligned_cols=183  Identities=22%  Similarity=0.337  Sum_probs=149.9

Q ss_pred             CCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEc
Q 039564           17 HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLV   96 (485)
Q Consensus        17 ~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l   96 (485)
                      +|+.|+|++|.+++ +|..+.    ++|++|+|++|.|+.+.      .....|++|++++|.|++. |....+|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~~ip------~~l~~L~~L~Ls~N~l~~i-p~l~~~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALISLP------ELPASLEYLDACDNRLSTL-PELPASLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCC-CCCCTTCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCcccc------cccCCCCEEEccCCCCCCc-chhhcCCCEEEC
Confidence            99999999999995 777653    68999999999999653      2345569999999999984 445559999999


Q ss_pred             cCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEcc
Q 039564           97 SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG  176 (485)
Q Consensus        97 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  176 (485)
                      ++|.+++ +|.   .+++|+.|++++|.++ .+|.          .+++|++|++++|.+++ +|. |.  ++|++|+|+
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            9999996 666   6899999999999998 4775          24799999999999996 666 66  899999999


Q ss_pred             CCcccCCcChhhhCCCCC-------CEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564          177 NNQIIDTFPAWLGTLSEL-------DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK  237 (485)
Q Consensus       177 ~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  237 (485)
                      +|.++. +|. |..  +|       +.|++++|.+. .+|..+  ..+++|+.|++++|.+++.+|..
T Consensus       189 ~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          189 TNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI--LSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             SSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGG--GGSCTTEEEECCSSSCCHHHHHH
T ss_pred             CCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHH--hcCCCCCEEEeeCCcCCCcCHHH
Confidence            999974 444 544  67       99999999998 678776  45999999999999999766654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=2.8e-19  Score=160.11  Aligned_cols=158  Identities=20%  Similarity=0.144  Sum_probs=107.7

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCC-hhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIP-SWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII  149 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L  149 (485)
                      +++++++|.++......+..+++|++++|.+++..+ ..|..+++|++|++++|.+++..|.       .|..+++|++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-------~~~~l~~L~~L   86 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-------AFEGASGVNEI   86 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEE
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH-------HhCCCCCCCEE
Confidence            455555555554333334455666666666665433 3467777788888887777744332       34455778888


Q ss_pred             EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc
Q 039564          150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS  229 (485)
Q Consensus       150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  229 (485)
                      ++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+.+..|..+  ..+++|+.|++++|.
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANP  164 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCC
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcC
Confidence            888888876666677778888888888888877777777778888888888888776666666  667788888888888


Q ss_pred             CCccCChh
Q 039564          230 FTGNLPSK  237 (485)
Q Consensus       230 l~~~~~~~  237 (485)
                      +.+..+..
T Consensus       165 l~c~c~l~  172 (220)
T 2v70_A          165 FNCNCYLA  172 (220)
T ss_dssp             EECSGGGH
T ss_pred             CcCCCchH
Confidence            77655433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.5e-19  Score=174.76  Aligned_cols=104  Identities=24%  Similarity=0.231  Sum_probs=56.3

Q ss_pred             CEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcccc-CCCCCcEEEccCCcccCCcChhhhCCCCC
Q 039564          116 YILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA-NCAVLEIIDLGNNQIIDTFPAWLGTLSEL  194 (485)
Q Consensus       116 ~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  194 (485)
                      ++++++++.++ .+|..+.         ..++.|+|++|.+++..+..|. .+++|++|+|++|.+++..+..|..+++|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   90 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL   90 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CEEEeCCCCcC-ccCccCC---------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC
Confidence            45555555555 4554321         3355566666666655555554 55666666666666655555555556666


Q ss_pred             CEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564          195 DILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       195 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  231 (485)
                      ++|+|++|.+.+..+..+  ..+++|+.|++++|.+.
T Consensus        91 ~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~  125 (361)
T 2xot_A           91 RYLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNHIV  125 (361)
T ss_dssp             CEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCcCCHHHh--CCCcCCCEEECCCCccc
Confidence            666666665553333333  44555555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=5.9e-19  Score=158.00  Aligned_cols=156  Identities=18%  Similarity=0.165  Sum_probs=111.8

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      +.++++++.++......++++++|++++|.+++..+..|..+++|++|+|++|.+++..|..       |..+++|++|+
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-------~~~l~~L~~L~   86 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-------FQGLRSLNSLV   86 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-------TTTCSSCCEEE
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-------hhCCcCCCEEE
Confidence            45666666665444334566777777777777666667777888888888888877555543       44457888888


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF  230 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  230 (485)
                      |++|.++...+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..+  ..+++|+.|++++|.+
T Consensus        87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCE
T ss_pred             CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCc
Confidence            88888885555567778888888888888877777778888888888888888875555555  6678888888888887


Q ss_pred             CccCC
Q 039564          231 TGNLP  235 (485)
Q Consensus       231 ~~~~~  235 (485)
                      .....
T Consensus       165 ~c~c~  169 (220)
T 2v9t_B          165 ICDCH  169 (220)
T ss_dssp             ECSGG
T ss_pred             CCCCc
Confidence            65433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=7.2e-19  Score=157.46  Aligned_cols=67  Identities=22%  Similarity=0.282  Sum_probs=44.3

Q ss_pred             hccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       315 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      |..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+
T Consensus       100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            3455666666666666666666666666677777777777766555666667777777777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=7.6e-19  Score=157.30  Aligned_cols=85  Identities=21%  Similarity=0.239  Sum_probs=61.3

Q ss_pred             EEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564          300 VILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL  379 (485)
Q Consensus       300 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l  379 (485)
                      |++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            33333333334444566777788888888888777777788888888888888888877778888888888888888888


Q ss_pred             cccCC
Q 039564          380 TGPIP  384 (485)
Q Consensus       380 ~~~~p  384 (485)
                      ++..+
T Consensus       166 ~c~c~  170 (220)
T 2v70_A          166 NCNCY  170 (220)
T ss_dssp             ECSGG
T ss_pred             cCCCc
Confidence            76543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.5e-18  Score=162.32  Aligned_cols=142  Identities=22%  Similarity=0.326  Sum_probs=79.7

Q ss_pred             cEEEcCCCcccccCCC-CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564           71 FTLDLSSNFLQGPIPA-PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII  149 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L  149 (485)
                      ++|++++|.+++..+- .+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++        .+..+++|+.|
T Consensus        71 ~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~~--------~l~~l~~L~~L  139 (291)
T 1h6t_A           71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-IN--------GLVHLPQLESL  139 (291)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-CG--------GGGGCTTCCEE
T ss_pred             CEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-Ch--------hhcCCCCCCEE
Confidence            4444444444433321 14555555555555543 22 35666666666666666652 21        12334666666


Q ss_pred             EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc
Q 039564          150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS  229 (485)
Q Consensus       150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  229 (485)
                      ++++|.+++.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++. +  ..+++|+.|++++|.
T Consensus       140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l--~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-L--AGLKNLDVLELFSQE  211 (291)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-G--TTCTTCSEEEEEEEE
T ss_pred             EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-h--ccCCCCCEEECcCCc
Confidence            6666666643  456666666666666666655443  5666666666666666653 332 3  456666666666666


Q ss_pred             CC
Q 039564          230 FT  231 (485)
Q Consensus       230 l~  231 (485)
                      +.
T Consensus       212 i~  213 (291)
T 1h6t_A          212 CL  213 (291)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=2e-18  Score=161.59  Aligned_cols=79  Identities=30%  Similarity=0.462  Sum_probs=52.8

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                      |+.|++++|.+++.  ..+..+++|++|++++|++++..+  +..+++|+.|++++|.+++ ++. +..+++|+.|++++
T Consensus       136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFS  209 (291)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEE
T ss_pred             CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcC
Confidence            55555555555533  346667777777777777775443  6777777777777777774 343 67777777777777


Q ss_pred             Ccccc
Q 039564          377 NNLTG  381 (485)
Q Consensus       377 N~l~~  381 (485)
                      |+++.
T Consensus       210 n~i~~  214 (291)
T 1h6t_A          210 QECLN  214 (291)
T ss_dssp             EEEEC
T ss_pred             CcccC
Confidence            77764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=4.3e-18  Score=153.42  Aligned_cols=155  Identities=21%  Similarity=0.197  Sum_probs=126.3

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      +.++++++.++......+++|++|++++|.+++..|..|.++++|++|+|++|.++ .+|.      ..|..+++|++|+
T Consensus        22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~------~~~~~l~~L~~L~   94 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV------GVFDSLTQLTVLD   94 (229)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred             CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcCh------hhcccCCCcCEEE
Confidence            67777777777555555788888888888888877888999999999999999987 5553      3355668999999


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF  230 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  230 (485)
                      +++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+  ..+++|+.|++++|.+
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCB
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCc
Confidence            9999999777777889999999999999996 567778899999999999999985554445  6789999999999998


Q ss_pred             CccCC
Q 039564          231 TGNLP  235 (485)
Q Consensus       231 ~~~~~  235 (485)
                      .+..+
T Consensus       172 ~c~c~  176 (229)
T 3e6j_A          172 DCECR  176 (229)
T ss_dssp             CTTBG
T ss_pred             cCCcc
Confidence            86543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=3.7e-18  Score=153.86  Aligned_cols=68  Identities=22%  Similarity=0.206  Sum_probs=43.1

Q ss_pred             hccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccC
Q 039564          315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI  383 (485)
Q Consensus       315 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~  383 (485)
                      +..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..
T Consensus       108 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             hCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            445566666666666666 55566666666666666666666555555666666777777766666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=2.3e-18  Score=166.51  Aligned_cols=154  Identities=24%  Similarity=0.170  Sum_probs=104.8

Q ss_pred             cEEEcCCCcccccCCC----CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCc
Q 039564           71 FTLDLSSNFLQGPIPA----PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNL  146 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L  146 (485)
                      +.|+|++|.|++..+.    .+++|++|++++|.+++..+..|.++++|++|+|++|.+++..+       ..|..+++|
T Consensus        42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L  114 (361)
T 2xot_A           42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE-------FLFSDLQAL  114 (361)
T ss_dssp             SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-------TTTTTCTTC
T ss_pred             CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH-------HHhCCCcCC
Confidence            4444444444443332    24566666666666666666678888888888888888874333       334556888


Q ss_pred             cEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhh---hCCCCCCEEEeeccccccccCCccccCCCCC--cc
Q 039564          147 GIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL---GTLSELDILVLQSNNFHGEIKEHKMECGFPK--LR  221 (485)
Q Consensus       147 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~--L~  221 (485)
                      ++|+|++|.+++..+..|..+++|++|+|++|.++...+..|   ..+++|+.|+|++|.+.+..+..+  ..++.  ++
T Consensus       115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--~~l~~~~l~  192 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL--QKLPAWVKN  192 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH--HHSCHHHHT
T ss_pred             CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh--hhccHhhcc
Confidence            888888888887777888888888888888888877665555   568888888888888874333333  44555  47


Q ss_pred             EEEccCccCCcc
Q 039564          222 IVDLSNNSFTGN  233 (485)
Q Consensus       222 ~L~l~~n~l~~~  233 (485)
                      .|++++|.+...
T Consensus       193 ~l~l~~N~~~C~  204 (361)
T 2xot_A          193 GLYLHNNPLECD  204 (361)
T ss_dssp             TEECCSSCEECC
T ss_pred             eEEecCCCccCC
Confidence            788888888743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=2.2e-18  Score=176.60  Aligned_cols=142  Identities=22%  Similarity=0.329  Sum_probs=75.3

Q ss_pred             cEEEcCCCcccccCCCC-CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564           71 FTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII  149 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L  149 (485)
                      ++|+|++|.+++..+-. +++|++|+|++|.+.+ +| .+..+++|+.|+|++|.+.+ +|        .+..+++|+.|
T Consensus        68 ~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~--------~l~~l~~L~~L  136 (605)
T 1m9s_A           68 TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-IN--------GLVHLPQLESL  136 (605)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CG--------GGGGCTTCSEE
T ss_pred             CEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Cc--------cccCCCccCEE
Confidence            44444444444333211 4445555555555542 22 45556666666666665552 21        12334566666


Q ss_pred             EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc
Q 039564          150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS  229 (485)
Q Consensus       150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  229 (485)
                      +|++|.+++.  ..+..+++|++|+|++|.+.+..|  +..+++|+.|+|++|.+.+ ++ .+  ..+++|+.|++++|.
T Consensus       137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l--~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-AL--AGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GG--TTCTTCSEEECCSEE
T ss_pred             ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HH--ccCCCCCEEEccCCc
Confidence            6666666533  455566666666666666655444  5566666666666666653 22 23  455666666666666


Q ss_pred             CC
Q 039564          230 FT  231 (485)
Q Consensus       230 l~  231 (485)
                      +.
T Consensus       209 l~  210 (605)
T 1m9s_A          209 CL  210 (605)
T ss_dssp             EE
T ss_pred             Cc
Confidence            55

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=5.7e-18  Score=173.57  Aligned_cols=173  Identities=20%  Similarity=0.234  Sum_probs=141.6

Q ss_pred             hhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCC
Q 039564           12 LKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTK   90 (485)
Q Consensus        12 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~   90 (485)
                      +..+++|+.|++++|.+. .+| .+.  .+++|+.|+|++|.++++.+   +..+..+ +.|+|++|.+++...-. +++
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~-~l~--~l~~L~~L~Ls~N~l~~~~~---l~~l~~L-~~L~Ls~N~l~~l~~l~~l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ-GIQ--YLPNVTKLFLNGNKLTDIKP---LTNLKNL-GWLFLDENKIKDLSSLKDLKK  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT-TGG--GCTTCCEEECTTSCCCCCGG---GGGCTTC-CEEECCSSCCCCCTTSTTCTT
T ss_pred             hhcCCCCCEEECcCCCCC-CCh-HHc--cCCCCCEEEeeCCCCCCChh---hccCCCC-CEEECcCCCCCCChhhccCCC
Confidence            567899999999999998 455 466  79999999999999988643   4444444 99999999998754322 899


Q ss_pred             CcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCC
Q 039564           91 TRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVL  170 (485)
Q Consensus        91 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  170 (485)
                      |++|+|++|.+.+ + ..+..+++|+.|+|++|.+++.  .       .+..+++|+.|+|++|.+++..|  +..+++|
T Consensus       111 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~-------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L  177 (605)
T 1m9s_A          111 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--T-------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKL  177 (605)
T ss_dssp             CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--G-------GGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--h-------hhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence            9999999999985 3 4588999999999999998843  2       34566899999999999997665  8899999


Q ss_pred             cEEEccCCcccCCcChhhhCCCCCCEEEeeccccccc
Q 039564          171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE  207 (485)
Q Consensus       171 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  207 (485)
                      ++|+|++|.+++.  ..+..+++|+.|+|++|.+.+.
T Consensus       178 ~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          178 QNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            9999999999775  3588999999999999998743

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=1e-17  Score=154.30  Aligned_cols=169  Identities=20%  Similarity=0.235  Sum_probs=103.4

Q ss_pred             CCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCcE
Q 039564           15 QKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTRH   93 (485)
Q Consensus        15 l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~   93 (485)
                      +.++..++++++.+.+ ++ .+.  .+++|++|++++|.++.+.   .+..+..+ ++|++++|.+++..+-. +++|++
T Consensus        18 l~~l~~l~l~~~~i~~-~~-~~~--~l~~L~~L~l~~n~i~~l~---~l~~l~~L-~~L~L~~N~i~~~~~l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTD-LV-SQK--ELSGVQNFNGDNSNIQSLA---GMQFFTNL-KELHLSHNQISDLSPLKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTS-EE-CHH--HHTTCSEEECTTSCCCCCT---TGGGCTTC-CEEECCSSCCCCCGGGTTCSSCCE
T ss_pred             HHHHHHHHhcCCCccc-cc-chh--hcCcCcEEECcCCCcccch---HHhhCCCC-CEEECCCCccCCChhhccCCCCCE
Confidence            3444555555555552 22 333  4556666666666555431   22333333 66666666655544311 566666


Q ss_pred             EEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEE
Q 039564           94 YLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII  173 (485)
Q Consensus        94 L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  173 (485)
                      |++++|.+++ +|.. .. ++|+.|++++|.+++ +|        .+..+++|+.|++++|.+++. + .+..+++|++|
T Consensus        90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~--------~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L  155 (263)
T 1xeu_A           90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD--------SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL  155 (263)
T ss_dssp             EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG--------GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE
T ss_pred             EECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch--------hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE
Confidence            6666666663 3332 22 777788888877763 32        244557788888888887743 3 57778888888


Q ss_pred             EccCCcccCCcChhhhCCCCCCEEEeeccccccc
Q 039564          174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE  207 (485)
Q Consensus       174 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  207 (485)
                      ++++|.+++.  ..+..+++|+.|++++|.+...
T Consensus       156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            8888888766  5577788888888888887643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.7e-17  Score=145.99  Aligned_cols=80  Identities=19%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCce-ecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNN-LEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS  375 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  375 (485)
                      |+.|++++|.+++..+..+..+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|+++
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence            4444444444444445556667777777777776 44 444 46677777777777777774 33 56677777777777


Q ss_pred             CCccc
Q 039564          376 HNNLT  380 (485)
Q Consensus       376 ~N~l~  380 (485)
                      +|++.
T Consensus       190 ~N~i~  194 (197)
T 4ezg_A          190 SQTIG  194 (197)
T ss_dssp             BC---
T ss_pred             CcccC
Confidence            77765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=2e-17  Score=145.46  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=25.1

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccc
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN  203 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  203 (485)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            444444444444443334444444444444444444433333334444444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=6.9e-21  Score=194.00  Aligned_cols=192  Identities=21%  Similarity=0.214  Sum_probs=114.9

Q ss_pred             hCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCc-------------CcCcCCCCCCCCCCCCccEEE-cCCC
Q 039564           13 KQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNS-------------LTGFDQHPSVFPWSSGEFTLD-LSSN   78 (485)
Q Consensus        13 ~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~~~~~lL~~L~-l~~n   78 (485)
                      ..+++|+.|+|++|++. .+|..++  .+++|+.|++++|.             +.+..+.  .+..+..|+.|+ ++.|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~--~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~--~l~~l~~L~~L~~l~~n  420 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELE--SCKELQELEPENKWCLLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAA  420 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHH--HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH--HHHHHHHHHHHCGGGHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHH--HHHHHHHhccccchhhhhHHHHHHhcccccCCHH--HHHHHHhcccCcchhhc
Confidence            67899999999999998 8899998  89999999997774             3333322  222333336676 5554


Q ss_pred             ccc-------------ccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCC
Q 039564           79 FLQ-------------GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSN  145 (485)
Q Consensus        79 ~l~-------------~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~  145 (485)
                      .+.             ...   ...|+.|++++|.+++ +|. |+.+++|+.|+|++|.++ .+|..++.       +++
T Consensus       421 ~~~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------l~~  487 (567)
T 1dce_A          421 YLDDLRSKFLLENSVLKME---YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-------LRC  487 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-------CTT
T ss_pred             ccchhhhhhhhcccccccC---ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc-------CCC
Confidence            332             111   1245666666666653 444 666666666666666665 55544433       356


Q ss_pred             ccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCc-ChhhhCCCCCCEEEeeccccccccCCcc-ccCCCCCccEE
Q 039564          146 LGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTF-PAWLGTLSELDILVLQSNNFHGEIKEHK-MECGFPKLRIV  223 (485)
Q Consensus       146 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~l~~L~~L  223 (485)
                      |+.|+|++|.+++ +| .+..+++|++|+|++|.+++.. |..++.+++|+.|++++|.+.+..+... ....+++|+.|
T Consensus       488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            6666666666663 44 5666666666666666665554 5566666666666666666654433211 01224555555


Q ss_pred             E
Q 039564          224 D  224 (485)
Q Consensus       224 ~  224 (485)
                      +
T Consensus       566 ~  566 (567)
T 1dce_A          566 L  566 (567)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=7.5e-18  Score=155.14  Aligned_cols=169  Identities=22%  Similarity=0.268  Sum_probs=109.1

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEE
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIV  223 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  223 (485)
                      .+++.+++++|.+++..  .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+  +  ..+++|+.|
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~L   90 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEE
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCEE
Confidence            34555556666655322  355566666666666666433 2 45666666666666666653322  3  556666666


Q ss_pred             EccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcC
Q 039564          224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS  303 (485)
Q Consensus       224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls  303 (485)
                      ++++|.++ .++...                                                       ...|+.|+++
T Consensus        91 ~L~~N~l~-~l~~~~-------------------------------------------------------~~~L~~L~L~  114 (263)
T 1xeu_A           91 SVNRNRLK-NLNGIP-------------------------------------------------------SACLSRLFLD  114 (263)
T ss_dssp             ECCSSCCS-CCTTCC-------------------------------------------------------CSSCCEEECC
T ss_pred             ECCCCccC-CcCccc-------------------------------------------------------cCcccEEEcc
Confidence            66666665 232110                                                       0226777777


Q ss_pred             CCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCccccc
Q 039564          304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP  382 (485)
Q Consensus       304 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  382 (485)
                      +|.+++ ++ .+..+++|++|++++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          115 NNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            777764 33 477788888888888888743 3 577888888888888888865  5677888888888888888754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=1.4e-18  Score=182.42  Aligned_cols=163  Identities=17%  Similarity=0.138  Sum_probs=97.4

Q ss_pred             CCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcc
Q 039564           42 QNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS  121 (485)
Q Consensus        42 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~  121 (485)
                      ++++.|+|.+|.+.....        ..++.++|+.|.|.           .+++..|.+. ..+..|..++.|+.|+|+
T Consensus       173 ~~~~~l~L~~n~~~~~~~--------~~l~~l~Ls~~~i~-----------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls  232 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQ--------ALLQHKKLSQYSID-----------EDDDIENRMV-MPKDSKYDDQLWHALDLS  232 (727)
T ss_dssp             ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred             CccceEEeeCCCCCcchh--------hHhhcCccCccccc-----------Ccccccccee-cChhhhccCCCCcEEECC
Confidence            456777777776665311        12355666666554           3455556665 567788889999999999


Q ss_pred             cCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeec
Q 039564          122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQS  201 (485)
Q Consensus       122 ~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  201 (485)
                      +|.+. .+|..+..       +++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+.+++|++|+|++
T Consensus       233 ~n~l~-~l~~~~~~-------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~  302 (727)
T 4b8c_D          233 NLQIF-NISANIFK-------YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD  302 (727)
T ss_dssp             TSCCS-CCCGGGGG-------CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred             CCCCC-CCChhhcC-------CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence            99988 77765543       488999999999998 78888999999999999999997 5688889999999999999


Q ss_pred             cccccccCCccccCCCCCccEEEccCccCCccCChh
Q 039564          202 NNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSK  237 (485)
Q Consensus       202 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  237 (485)
                      |.+. .+|..+  ..+++|+.|+|++|.+.+.+|..
T Consensus       303 N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          303 NMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             SCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCC-ccChhh--hcCCCccEEeCCCCccCCCChHH
Confidence            9887 778776  78899999999999998766654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=3.8e-18  Score=162.82  Aligned_cols=75  Identities=12%  Similarity=0.024  Sum_probs=41.8

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCC-EEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEe
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQ-VLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFN  373 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  373 (485)
                      |+.+++.+| +....+..|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|.++.+.+..|.++++|+.++
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            444444444 4434444555666666 666655 45444455666666666666666666655555666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=1.3e-17  Score=145.95  Aligned_cols=88  Identities=24%  Similarity=0.316  Sum_probs=68.6

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                      |+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..|..+++|+.|++++
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            66666666766666677777788888888888888877777788888888888888888877788888888888888888


Q ss_pred             CcccccCC
Q 039564          377 NNLTGPIP  384 (485)
Q Consensus       377 N~l~~~~p  384 (485)
                      |++++..+
T Consensus       136 N~l~c~c~  143 (192)
T 1w8a_A          136 NPFNCNCH  143 (192)
T ss_dssp             CCBCCSGG
T ss_pred             CCccCcCc
Confidence            88876544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1.7e-16  Score=138.82  Aligned_cols=128  Identities=25%  Similarity=0.294  Sum_probs=56.2

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCCh-hhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPS-WICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII  149 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L  149 (485)
                      +++++++|.++........++++|++++|.+++..+. .|..+++|++|+|++|.+++..|..+       ..+++|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-------EGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-------TTCTTCCEE
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-------CCcccCCEE
Confidence            3445555444322222233444444444444433322 24455555555555555553333222       223445555


Q ss_pred             EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564          150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  205 (485)
                      ++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+.
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            55555554444444444444444444444444444444444444444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=4.5e-19  Score=180.64  Aligned_cols=87  Identities=29%  Similarity=0.386  Sum_probs=69.3

Q ss_pred             cccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccC-cccccCCCCCCEEec
Q 039564          296 ILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQI-PQQLTGLTFLEFFNV  374 (485)
Q Consensus       296 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l  374 (485)
                      .|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            3777888888887 677788888888888888888885 56 7788888888888888888765 788888888888888


Q ss_pred             cCCcccccCCC
Q 039564          375 SHNNLTGPIPE  385 (485)
Q Consensus       375 ~~N~l~~~~p~  385 (485)
                      ++|++++.+|.
T Consensus       541 ~~N~l~~~~~~  551 (567)
T 1dce_A          541 QGNSLCQEEGI  551 (567)
T ss_dssp             TTSGGGGSSSC
T ss_pred             cCCcCCCCccH
Confidence            88888876553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3.3e-16  Score=136.91  Aligned_cols=113  Identities=24%  Similarity=0.374  Sum_probs=100.9

Q ss_pred             ccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEec
Q 039564          295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV  374 (485)
Q Consensus       295 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  374 (485)
                      ..++.|++++|.++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            34899999999998 77889999999999999999999888889999999999999999999888889999999999999


Q ss_pred             cCCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564          375 SHNNLTGPIPEA-NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       375 ~~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      ++|.+++..+.. ..++.+..+.+.+||+.|+|.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            999999755543 4577888899999999999865

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=2.2e-17  Score=173.35  Aligned_cols=179  Identities=18%  Similarity=0.195  Sum_probs=113.8

Q ss_pred             ccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCC
Q 039564          138 DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGF  217 (485)
Q Consensus       138 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  217 (485)
                      +.|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..+  ..+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l  292 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSC  292 (727)
T ss_dssp             ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGG
T ss_pred             hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCC
Confidence            44566789999999999998 77777779999999999999997 67888999999999999999998 778887  778


Q ss_pred             CCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccc
Q 039564          218 PKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYIL  297 (485)
Q Consensus       218 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L  297 (485)
                      ++|++|+|++|.+. .+|.. +..                                                    ++.|
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~-~~~----------------------------------------------------l~~L  318 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWE-FGN----------------------------------------------------LCNL  318 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSS-TTS----------------------------------------------------CTTC
T ss_pred             CCCCEEECCCCCCC-ccChh-hhc----------------------------------------------------CCCc
Confidence            99999999999987 77754 333                                                    2337


Q ss_pred             cEEEcCCCcCcccCchhhccCCC-CCEEeCcCceecccCCccccCCCCCCEEECCCC--------cCcccCcccccCCCC
Q 039564          298 TAVILSSNGFHGEIPTSIANLKG-LQVLSLANNNLEGHIPSCFGDLTKLESLDLSNN--------WFSGQIPQQLTGLTF  368 (485)
Q Consensus       298 ~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~  368 (485)
                      +.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|..      |+.|++++|        .+.+..+..+..+..
T Consensus       319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~  392 (727)
T 4b8c_D          319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAK  392 (727)
T ss_dssp             CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------
T ss_pred             cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccc
Confidence            88888888888888877655422 224778888888777753      556666666        334344444555666


Q ss_pred             CCEEeccCCcccc
Q 039564          369 LEFFNVSHNNLTG  381 (485)
Q Consensus       369 L~~L~l~~N~l~~  381 (485)
                      +....+++|-+.+
T Consensus       393 ~~~~~ls~Nil~~  405 (727)
T 4b8c_D          393 RTFTVLSYNTLCQ  405 (727)
T ss_dssp             ---------CCCG
T ss_pred             cceeeeecccccc
Confidence            6667777777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=1.1e-15  Score=133.70  Aligned_cols=127  Identities=23%  Similarity=0.253  Sum_probs=72.8

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      +++++++|.++......++++++|++++|.++ .+|..|.++++|++|++++|.+++..+       ..|..+++|++|+
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~-------~~f~~l~~L~~L~   84 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN-------QSFSNMTQLLTLI   84 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEE
T ss_pred             CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCH-------hHccCCCCCCEEE
Confidence            45566666555333333455566666666665 455666666677777777766663322       2234446666666


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  205 (485)
                      +++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            6666666555555666666666666666665554445555555555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=4.5e-16  Score=133.06  Aligned_cols=42  Identities=26%  Similarity=0.198  Sum_probs=18.7

Q ss_pred             hccCCCCCEEeCcCceecccCC---ccccCCCCCCEEECCCCcCc
Q 039564          315 IANLKGLQVLSLANNNLEGHIP---SCFGDLTKLESLDLSNNWFS  356 (485)
Q Consensus       315 ~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~  356 (485)
                      +..+++|++|++++|++++..+   ..+..+++|+.|++++|.+.
T Consensus       116 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          116 LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            3344444444444444443222   23444444444444444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=3.9e-16  Score=133.46  Aligned_cols=136  Identities=18%  Similarity=0.189  Sum_probs=99.7

Q ss_pred             CCCCcEEEccCCccc-ccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccC
Q 039564           88 PTKTRHYLVSKNNLT-GEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN  166 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  166 (485)
                      +++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  .       .+..+++|++|++++|.+++.+|..+..
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-------NLPKLPKLKKLELSENRIFGGLDMLAEK   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-------SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-------hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence            567777777777776 56777777888888888888887733  2       2445578888888888888667777777


Q ss_pred             CCCCcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccC---CccccCCCCCccEEEccCccCCccCC
Q 039564          167 CAVLEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIK---EHKMECGFPKLRIVDLSNNSFTGNLP  235 (485)
Q Consensus       167 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~  235 (485)
                      +++|++|++++|.+++... ..+..+++|++|++++|.+.+..+   ..+  ..+++|++|++++|.+. .+|
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~-~~~  163 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF--KLLPQLTYLDGYDREDQ-EAP  163 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH--TTCSSCCEETTEETTSC-BCC
T ss_pred             CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH--HhCccCcEecCCCCChh-hcc
Confidence            8888888888888866532 667788888888888888874433   234  67788888888888776 444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=1.9e-15  Score=130.28  Aligned_cols=128  Identities=21%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      +.+++++|.++......+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|.      ..|..+++|++|+
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~------~~~~~l~~L~~L~   82 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPD------GVFDKLTKLTILY   82 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeCh------hHccCCCccCEEE
Confidence            45555555555433333445555555555555444444555666666666666555 2222      1223345555555


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  205 (485)
                      +++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            5555555444444455555555555555554444433444444444444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.6e-15  Score=126.83  Aligned_cols=38  Identities=13%  Similarity=0.160  Sum_probs=17.7

Q ss_pred             CCccEEEccCCccc-ccCCccccCCCCCcEEEccCCccc
Q 039564          144 SNLGIIDMSHNLLQ-GRIPKSLANCAVLEIIDLGNNQII  181 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~  181 (485)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~   55 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT   55 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC
Confidence            34444455544444 344444444444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=8.6e-16  Score=128.47  Aligned_cols=128  Identities=18%  Similarity=0.219  Sum_probs=75.1

Q ss_pred             CCCCcEEEccCCccc-ccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccC
Q 039564           88 PTKTRHYLVSKNNLT-GEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLAN  166 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  166 (485)
                      ++++++|++++|.++ +.+|..+..+++|++|++++|.+++.  .       .+..+++|++|++++|.+++.+|..+..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-------NLPKLNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-------TCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-------hhhcCCCCCEEECCCCcccchHHHHhhh
Confidence            345666666666665 45566666666666666666666532  1       2334466666666666666555555555


Q ss_pred             CCCCcEEEccCCcccCC-cChhhhCCCCCCEEEeeccccccccC---CccccCCCCCccEEEcc
Q 039564          167 CAVLEIIDLGNNQIIDT-FPAWLGTLSELDILVLQSNNFHGEIK---EHKMECGFPKLRIVDLS  226 (485)
Q Consensus       167 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~l~~L~~L~l~  226 (485)
                      +++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+   ..+  ..+++|+.|+++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~  148 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF--KLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHH--HHCTTCCEETTB
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHH--HHCCCcccccCC
Confidence            66666666666666543 23556666666666666666653322   123  445666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1e-14  Score=125.77  Aligned_cols=88  Identities=26%  Similarity=0.273  Sum_probs=61.1

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                      |+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            55555555555544445566777778888888877766666677777888888888877755555567777788888888


Q ss_pred             CcccccCC
Q 039564          377 NNLTGPIP  384 (485)
Q Consensus       377 N~l~~~~p  384 (485)
                      |++.+..|
T Consensus       134 N~~~~~~~  141 (177)
T 2o6r_A          134 NPWDCSCP  141 (177)
T ss_dssp             SCBCCCHH
T ss_pred             CCeeccCc
Confidence            87776443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=2.5e-13  Score=132.23  Aligned_cols=63  Identities=10%  Similarity=0.126  Sum_probs=28.1

Q ss_pred             hhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCC-CCCEEeccCC
Q 039564          313 TSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT-FLEFFNVSHN  377 (485)
Q Consensus       313 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N  377 (485)
                      ..|.++++|+.++|..| ++.+...+|.++ +|+.+++++|.+....+..|..++ .+..+.+..+
T Consensus       317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            34444455555555333 333334444444 455555555544433334444442 3444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=1.1e-14  Score=138.87  Aligned_cols=261  Identities=11%  Similarity=0.116  Sum_probs=166.9

Q ss_pred             CCCCCEEECCCCcCCCCCCcccccCC-CCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC------
Q 039564           15 QKHLKALDLSSNKLHGNIPKWLLNPS-MQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP------   87 (485)
Q Consensus        15 l~~L~~L~Ls~n~~~~~~p~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~------   87 (485)
                      +.+++.|.++++- ....-..+.  . +++|++|||++|.++........+..   ++.+.+..|.|.......      
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~--~~l~~L~~LdLs~n~i~~~~~~~~~~~~---~~~~~~~~~~I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLR--DEFPSLKVLDISNAEIKMYSGKAGTYPN---GKFYIYMANFVPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHH--HSCTTCCEEEEEEEEECCEEESSSSSGG---GCCEEECTTEECTTTTEEEETTEE
T ss_pred             hCceeEEEEeccc-cHHHHHHHH--HhhccCeEEecCcceeEEecCccccccc---cccccccccccCHHHhcccccccc
Confidence            6789999998752 211112333  3 68899999999999822111112222   366777777666554445      


Q ss_pred             --CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcc----cccCC
Q 039564           88 --PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL----QGRIP  161 (485)
Q Consensus        88 --~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i----~~~~~  161 (485)
                        +++|+++++.+ .++...+.+|.++++|+.|++.+|.+. .++.      .+|..+.++..+.+..+..    .....
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~------~aF~~~~~l~~l~~~~~~~~~~~~~i~~  169 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLP------EALADSVTAIFIPLGSSDAYRFKNRWEH  169 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECT------TSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccch------hhhcCCCceEEecCcchhhhhccccccc
Confidence              89999999999 888777888999999999999999887 4444      4566667777777665332    21223


Q ss_pred             ccccCCCCCc-EEEccCCcccCCcChhh----------------------------hCCCCCCEEEeeccccccccCC-c
Q 039564          162 KSLANCAVLE-IIDLGNNQIIDTFPAWL----------------------------GTLSELDILVLQSNNFHGEIKE-H  211 (485)
Q Consensus       162 ~~~~~l~~L~-~L~Ls~n~l~~~~~~~~----------------------------~~l~~L~~L~L~~n~l~~~~~~-~  211 (485)
                      ..|.++..|+ .+.+...   +.++..+                            ..+++|+.+++.+|.+. .++. .
T Consensus       170 ~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~a  245 (329)
T 3sb4_A          170 FAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFT  245 (329)
T ss_dssp             SCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTT
T ss_pred             cccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhh
Confidence            4455566666 4444332   1111111                            12455555555555554 2322 2


Q ss_pred             cccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccc
Q 039564          212 KMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYE  291 (485)
Q Consensus       212 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  291 (485)
                      |  .++.+|+.+++.+| +. .++...|..+.                                                
T Consensus       246 F--~~~~~L~~l~l~~n-i~-~I~~~aF~~~~------------------------------------------------  273 (329)
T 3sb4_A          246 F--AQKKYLLKIKLPHN-LK-TIGQRVFSNCG------------------------------------------------  273 (329)
T ss_dssp             T--TTCTTCCEEECCTT-CC-EECTTTTTTCT------------------------------------------------
T ss_pred             h--hCCCCCCEEECCcc-cc-eehHHHhhCCh------------------------------------------------
Confidence            2  45555555555554 33 44444444333                                                


Q ss_pred             ccccccc-EEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEEC
Q 039564          292 KIPYILT-AVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL  350 (485)
Q Consensus       292 ~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  350 (485)
                          .|+ .+++.+ .++...+..|.++++|+.+++++|+++...+.+|.++++|+.++.
T Consensus       274 ----~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          274 ----RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ----TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ----hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence                366 777776 566566788999999999999999999788889999999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=6.9e-13  Score=129.20  Aligned_cols=262  Identities=14%  Similarity=0.122  Sum_probs=133.6

Q ss_pred             CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCC---CCCCCc
Q 039564           16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPA---PPTKTR   92 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~---~~~~L~   92 (485)
                      ..++.+.+.++ ++.....+|.  .+ +|+.+++..+ ++.+...  .|....+ +.+.+.+ .++.+...   .+.+|+
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~--~~-~L~~i~l~~~-i~~I~~~--aF~~~~L-~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFR--NS-QIAKVVLNEG-LKSIGDM--AFFNSTV-QEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTT--TC-CCSEEECCTT-CCEECTT--TTTTCCC-CEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             CCccEEEECCc-cCEehHhhcc--cC-CccEEEeCCC-ccEECHH--hcCCCCc-eEEEeCC-CccEehHHHhhCcccCC
Confidence            44555555432 3323333444  33 4666666544 4443332  3333333 5555554 23322221   145555


Q ss_pred             EEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcE
Q 039564           93 HYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI  172 (485)
Q Consensus        93 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  172 (485)
                      .+++++|.++.....+|. ..+|+.+.+..+ ++ .++.      .+|.++++|+.+++..+ ++.....+|.+ .+|+.
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~------~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGS------QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT  252 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECT------TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehh------hHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence            555555555533333443 355555555433 33 2222      34444555555555543 33233344444 45555


Q ss_pred             EEccCCcccCCcChhhhCCCCCCEEEeecccccc----ccC-CccccCCCCCccEEEccCccCCccCChhhhccccccee
Q 039564          173 IDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHG----EIK-EHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKF  247 (485)
Q Consensus       173 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  247 (485)
                      +.+. +.+..+...+|.++++|+.+.+.+|.+..    .++ ..|  .++++|+.+++.+ .+. .++...|..+     
T Consensus       253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF--~~c~~L~~l~l~~-~i~-~I~~~aF~~c-----  322 (401)
T 4fdw_A          253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL--EGCPKLARFEIPE-SIR-ILGQGLLGGN-----  322 (401)
T ss_dssp             EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT--TTCTTCCEECCCT-TCC-EECTTTTTTC-----
T ss_pred             EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh--hCCccCCeEEeCC-ceE-EEhhhhhcCC-----
Confidence            5553 23334444555555555555555544320    111 122  4455555555552 233 3443334333     


Q ss_pred             ccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCc
Q 039564          248 VNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLA  327 (485)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  327 (485)
                                                                     ..|+.+.+..+ ++......|.++ +|+.++++
T Consensus       323 -----------------------------------------------~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          323 -----------------------------------------------RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             -----------------------------------------------CSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred             -----------------------------------------------CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence                                                           33666667444 554556778888 99999999


Q ss_pred             CceecccCCccccCCC-CCCEEECCCCcCc
Q 039564          328 NNNLEGHIPSCFGDLT-KLESLDLSNNWFS  356 (485)
Q Consensus       328 ~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~  356 (485)
                      +|.+....+..|.+++ .++.|.+..+.+.
T Consensus       354 ~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          354 GTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            9988766777788774 7888988877654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=4e-14  Score=121.84  Aligned_cols=82  Identities=17%  Similarity=0.070  Sum_probs=33.4

Q ss_pred             CCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC--CCCCcEEEccCCcccccCChhhcCCCCCCE
Q 039564           40 SMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYI  117 (485)
Q Consensus        40 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  117 (485)
                      .+.+|++|++++|.++.+ +  .+....+.|++|++++|.+++. +..  +++|++|++++|.+++..+..|..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~--~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-E--NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-C--CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-H--HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            345555555555555543 1  2333332234444444444422 000  233333333333333222233344444444


Q ss_pred             EEcccCcc
Q 039564          118 LDLSDNNL  125 (485)
Q Consensus       118 L~L~~n~l  125 (485)
                      |++++|.+
T Consensus        93 L~L~~N~i  100 (176)
T 1a9n_A           93 LILTNNSL  100 (176)
T ss_dssp             EECCSCCC
T ss_pred             EECCCCcC
Confidence            44444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=1.6e-16  Score=139.78  Aligned_cols=64  Identities=22%  Similarity=0.238  Sum_probs=33.0

Q ss_pred             cccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564          163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       163 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  231 (485)
                      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+  ..+++|++|++++|.++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~--~~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD--AVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--HHHHHCSEEEEEEEECC
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--hcCCcCCEEECcCCcCC
Confidence            45555555555555555544 33 4555555555555555554 334333  23345555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=8.7e-14  Score=118.84  Aligned_cols=89  Identities=22%  Similarity=0.218  Sum_probs=74.7

Q ss_pred             cccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564          296 ILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS  375 (485)
Q Consensus       296 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  375 (485)
                      .++.|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            48888899998887778888888899999999998887777778888899999999999887666778888889999999


Q ss_pred             CCcccccCC
Q 039564          376 HNNLTGPIP  384 (485)
Q Consensus       376 ~N~l~~~~p  384 (485)
                      +|++++..+
T Consensus       111 ~N~~~c~c~  119 (170)
T 3g39_A          111 NNPWDCACS  119 (170)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCCCCCch
Confidence            888876543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=7.7e-14  Score=120.03  Aligned_cols=62  Identities=19%  Similarity=0.215  Sum_probs=29.7

Q ss_pred             ccCCCCCEEeCcCceecccCCc--cccCCCCCCEEECCCCcCcccCcc----cccCCCCCCEEeccCCcc
Q 039564          316 ANLKGLQVLSLANNNLEGHIPS--CFGDLTKLESLDLSNNWFSGQIPQ----QLTGLTFLEFFNVSHNNL  379 (485)
Q Consensus       316 ~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l  379 (485)
                      ..+++|++|++++|+++ .+|.  .+..+++|+.|++++|.++ .+|.    .+..+++|+.|++++|..
T Consensus        85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            34444555555555443 2332  4444555555555555554 2333    244555555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=2.7e-13  Score=116.13  Aligned_cols=89  Identities=22%  Similarity=0.227  Sum_probs=74.2

Q ss_pred             ccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEec
Q 039564          295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV  374 (485)
Q Consensus       295 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  374 (485)
                      ..++.|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            34888899999998777888888999999999999998766667788899999999999998666666888899999999


Q ss_pred             cCCcccccC
Q 039564          375 SHNNLTGPI  383 (485)
Q Consensus       375 ~~N~l~~~~  383 (485)
                      ++|++.+..
T Consensus       113 ~~N~~~c~~  121 (174)
T 2r9u_A          113 YNNPWDCEC  121 (174)
T ss_dssp             CSSCBCTTB
T ss_pred             CCCCccccc
Confidence            999887543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=6.3e-16  Score=135.94  Aligned_cols=43  Identities=28%  Similarity=0.421  Sum_probs=27.6

Q ss_pred             hhCCCCCCEEECCCCcCCCCCCc------ccccCCCCCCcEEEccCCcCcC
Q 039564           12 LKQQKHLKALDLSSNKLHGNIPK------WLLNPSMQNFSYLNLSKNSLTG   56 (485)
Q Consensus        12 ~~~l~~L~~L~Ls~n~~~~~~p~------~~~~~~l~~L~~L~Ls~n~l~~   56 (485)
                      +.....++.++++.+.+.+..|.      .+.  .+++|++|++++|.+++
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~--~l~~L~~L~ls~n~l~~   62 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS--TLKACKHLALSTNNIEK   62 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH--HTTTCSEEECSEEEESC
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHh--cCCCCCEEECCCCCCcc
Confidence            34456666666666666666665      555  56677777777666665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=5.2e-13  Score=113.97  Aligned_cols=104  Identities=28%  Similarity=0.260  Sum_probs=55.9

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      +++++++|.++......+++|++|++++|.+++..|..|.++++|++|+|++|+++ .+|.      ..|..+++|++|+
T Consensus        12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~------~~f~~l~~L~~L~   84 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPA------GVFDKLTQLTQLS   84 (170)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccCh------hhccCCCCCCEEE
Confidence            45555555555433223455555555555555555556666666666666666665 3332      2233345555555


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCccc
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQII  181 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  181 (485)
                      |++|.+++..+..|..+++|++|+|++|.+.
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555555444444555555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=1e-12  Score=112.56  Aligned_cols=104  Identities=22%  Similarity=0.223  Sum_probs=58.5

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      +.+++++|.++......+++|++|++++|.+++..|..|.++++|++|+|++|+++ .+|.      ..|..+++|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~------~~~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPT------GVFDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT------TTTTTCTTCCEEE
T ss_pred             cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccCh------hHhCCcchhhEEE
Confidence            45666666655333333455666666666666555666666666666666666666 3333      2233445666666


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCccc
Q 039564          151 MSHNLLQGRIPKSLANCAVLEIIDLGNNQII  181 (485)
Q Consensus       151 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  181 (485)
                      |++|.+++..+..|..+++|++|+|++|.+.
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6666666444444555566666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.37  E-value=4.1e-11  Score=116.93  Aligned_cols=313  Identities=13%  Similarity=0.098  Sum_probs=201.6

Q ss_pred             CCCCh-hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccC
Q 039564            6 FEFPN-FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPI   84 (485)
Q Consensus         6 ~~~p~-~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~   84 (485)
                      ++|++ +|.++.+|+.+.|..+ ++.....+|.  ++++|+.+++..+ ++.+..  ..|..+..|+.+.+..+ +....
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~--~aF~~c~~L~~i~~p~~-l~~i~  132 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFE--NCSKLEIINIPDS-VKMIGR--CTFSGCYALKSILLPLM-LKSIG  132 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT-CCEECTTTTT--TCTTCCEECCCTT-CCEECT--TTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhh--CCCCCcEEEeCCC-ceEccc--hhhcccccchhhcccCc-eeeec
Confidence            34544 7899999999999754 6645556787  8999999999865 555443  35555555577666544 22222


Q ss_pred             CCC--CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCc
Q 039564           85 PAP--PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK  162 (485)
Q Consensus        85 ~~~--~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~  162 (485)
                      ...  -..+....... .+......+|.++++|+.+.+..+. . .++.      .+|.++.+|+.+.+..+ ++.....
T Consensus       133 ~~aF~~~~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~------~~F~~c~~L~~i~l~~~-~~~I~~~  202 (394)
T 4fs7_A          133 VEAFKGCDFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-E-TLHN------GLFSGCGKLKSIKLPRN-LKIIRDY  202 (394)
T ss_dssp             TTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-C-EECT------TTTTTCTTCCBCCCCTT-CCEECTT
T ss_pred             ceeeecccccccccCc-cccccchhhhcccCCCcEEecCCcc-c-eecc------ccccCCCCceEEEcCCC-ceEeCch
Confidence            222  11222222222 2222345678899999999987653 3 3333      56777889999999876 5546667


Q ss_pred             cccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccC-CccccCCCCCccEEEccCccCCccCChhhhcc
Q 039564          163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIK-EHKMECGFPKLRIVDLSNNSFTGNLPSKYFQC  241 (485)
Q Consensus       163 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  241 (485)
                      .|.++..|+.+.+..+...  ....+....+|+.+.+.... . .+. ..+  ..+..++.+.+..+..  .+....|..
T Consensus       203 ~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f--~~~~~l~~~~~~~~~~--~i~~~~F~~  274 (394)
T 4fs7_A          203 CFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVF--YGCTDLESISIQNNKL--RIGGSLFYN  274 (394)
T ss_dssp             TTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTT--TTCSSCCEEEECCTTC--EECSCTTTT
T ss_pred             hhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccc--cccccceeEEcCCCcc--eeecccccc
Confidence            8888999998888776432  22334455788888876543 2 222 223  5677888888876643  344445555


Q ss_pred             cccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCC
Q 039564          242 WNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGL  321 (485)
Q Consensus       242 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  321 (485)
                      +..++.........                               ..........|+.+.+..+ +.......|.++.+|
T Consensus       275 ~~~l~~~~~~~~~i-------------------------------~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L  322 (394)
T 4fs7_A          275 CSGLKKVIYGSVIV-------------------------------PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL  322 (394)
T ss_dssp             CTTCCEEEECSSEE-------------------------------CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             ccccceeccCceee-------------------------------ccccccccccccccccccc-cceechhhhcCCCCC
Confidence            55555433221100                               0000112445777777654 554556678889999


Q ss_pred             CEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564          322 QVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       322 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      +.++|..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus       323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            99999765 66566778999999999999877 76666788999999999998754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=2.5e-12  Score=123.39  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             EEcCCC-cCcccCchhhccCCCCCEEeCcC-ceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564          300 VILSSN-GFHGEIPTSIANLKGLQVLSLAN-NNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       300 L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      ++.+++ +++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455555 555 3555 55566666666664 6666555555666666666666666666555555666666666666666


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          378 NLTGPIPEANQFPTFDSSSFDGNSGLCGKP  407 (485)
Q Consensus       378 ~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  407 (485)
                      +|++..+.......+..+.+.+|++.|+|.
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             ccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            665443333222225555566666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=1.9e-14  Score=138.91  Aligned_cols=116  Identities=19%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             CCCcEEEccCCcccccCChhh-----cCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc----
Q 039564           89 TKTRHYLVSKNNLTGEIPSWI-----CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR----  159 (485)
Q Consensus        89 ~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~----  159 (485)
                      .+|++|++++|.++......+     ...++|++|+|++|.++......+   ...+..+++|++|+|++|.+++.    
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~~~~L~~L~Ls~N~l~~~g~~~  202 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL---MEGLAGNTSVTHLSLLHTGLGDEGLEL  202 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH---HHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH---HHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence            445555555555543322222     234667777777776653211111   12233456677777777776642    


Q ss_pred             CCccccCCCCCcEEEccCCcccCC----cChhhhCCCCCCEEEeeccccccc
Q 039564          160 IPKSLANCAVLEIIDLGNNQIIDT----FPAWLGTLSELDILVLQSNNFHGE  207 (485)
Q Consensus       160 ~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~  207 (485)
                      ++..+...++|++|+|++|.+++.    ++.++...++|++|+|++|.+...
T Consensus       203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            244555666777777777777543    223344567777777777776543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=2.5e-13  Score=130.96  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=54.0

Q ss_pred             ccEEEcCCCcCccc----CchhhccCCCCCEEeCcCceeccc----CCccccCCCCCCEEECCCCcCccc----Cccccc
Q 039564          297 LTAVILSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGH----IPSCFGDLTKLESLDLSNNWFSGQ----IPQQLT  364 (485)
Q Consensus       297 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~  364 (485)
                      |+.|+|++|.++..    ++..+...++|++|+|++|.+++.    ++..+...++|+.|+|++|.++..    +...+.
T Consensus       157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~  236 (372)
T 3un9_A          157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR  236 (372)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred             cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence            66666666666532    333445667777777777777542    244556667777888888777643    233344


Q ss_pred             CCCCCCEEeccCCcccc
Q 039564          365 GLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       365 ~l~~L~~L~l~~N~l~~  381 (485)
                      ..++|+.|+|++|.++.
T Consensus       237 ~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          237 EHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HCSSCCEEECTTSSCCH
T ss_pred             hCCCCCEEeccCCCCCH
Confidence            56778888888887753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=5.7e-11  Score=113.90  Aligned_cols=85  Identities=19%  Similarity=0.129  Sum_probs=40.6

Q ss_pred             CCccEEEccC-CcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccE
Q 039564          144 SNLGIIDMSH-NLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRI  222 (485)
Q Consensus       144 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  222 (485)
                      ++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++.+..+..+  ..++ |+.
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~-L~~  107 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV--QGLS-LQE  107 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT--CSCC-CCE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc--ccCC-ceE
Confidence            4455555543 55544444445555555555555555555444455555555555555555542222222  2222 555


Q ss_pred             EEccCccCC
Q 039564          223 VDLSNNSFT  231 (485)
Q Consensus       223 L~l~~n~l~  231 (485)
                      |++.+|.+.
T Consensus       108 l~l~~N~~~  116 (347)
T 2ifg_A          108 LVLSGNPLH  116 (347)
T ss_dssp             EECCSSCCC
T ss_pred             EEeeCCCcc
Confidence            555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.16  E-value=1.7e-09  Score=105.36  Aligned_cols=292  Identities=12%  Similarity=0.039  Sum_probs=191.0

Q ss_pred             CCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCC---CCCCCCcEEEccCCccccc
Q 039564           28 LHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP---APPTKTRHYLVSKNNLTGE  104 (485)
Q Consensus        28 ~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~  104 (485)
                      ++.....+|.  ++.+|+.+.+..+ ++.+...  .|..+..|+.+++.++ ++.+..   ..+..|+.+.+..+ +...
T Consensus        59 VtsIg~~AF~--~c~~L~~i~lp~~-i~~I~~~--aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i  131 (394)
T 4fs7_A           59 VVSIGYAAFQ--GCRKVTEIKIPST-VREIGEF--AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSI  131 (394)
T ss_dssp             EEEECTTTTT--TCTTEEEEECCTT-CCEECTT--TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred             EeEhHHHHhh--CCCCceEEEeCCC-ccCcchh--HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeee
Confidence            4434456777  8999999999754 7765543  5666555599999765 443322   22777887777655 4435


Q ss_pred             CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCc
Q 039564          105 IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTF  184 (485)
Q Consensus       105 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  184 (485)
                      ...+|.++..++.......  . .+..      .+|..+.+|+.+.+.++..+ .....|.++.+|+.+++..+ +..+.
T Consensus       132 ~~~aF~~~~~~~~~~~~~~--~-~i~~------~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~  200 (394)
T 4fs7_A          132 GVEAFKGCDFKEITIPEGV--T-VIGD------EAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIR  200 (394)
T ss_dssp             CTTTTTTCCCSEEECCTTC--C-EECT------TTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEEC
T ss_pred             cceeeecccccccccCccc--c-ccch------hhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeC
Confidence            5667777654443332222  1 1221      56888899999999876543 66678999999999999876 55566


Q ss_pred             ChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccc
Q 039564          185 PAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYF  264 (485)
Q Consensus       185 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  264 (485)
                      ..+|..+..|+.+.+..+...  +....  ....+|+.+.+... +. .+....|..+..++.+.+......  +     
T Consensus       201 ~~~F~~~~~L~~i~~~~~~~~--i~~~~--~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~--i-----  267 (394)
T 4fs7_A          201 DYCFAECILLENMEFPNSLYY--LGDFA--LSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR--I-----  267 (394)
T ss_dssp             TTTTTTCTTCCBCCCCTTCCE--ECTTT--TTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE--E-----
T ss_pred             chhhccccccceeecCCCceE--eehhh--cccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcce--e-----
Confidence            678999999999888766532  22222  34467888888643 23 455555666666666544321100  0     


Q ss_pred             ccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCC
Q 039564          265 SFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTK  344 (485)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  344 (485)
                                            ..........++.+....+.   .....+..+.+|+.+.+..+ +..+...+|.++.+
T Consensus       268 ----------------------~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~  321 (394)
T 4fs7_A          268 ----------------------GGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS  321 (394)
T ss_dssp             ----------------------CSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred             ----------------------eccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCC
Confidence                                  00000113345555555432   22345778899999999776 66566778999999


Q ss_pred             CCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564          345 LESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       345 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      |+.+++..+ ++.+...+|.++.+|+.+++..+
T Consensus       322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            999999755 76666788999999999998765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.11  E-value=8.4e-09  Score=100.50  Aligned_cols=292  Identities=10%  Similarity=0.112  Sum_probs=160.8

Q ss_pred             hhhCCC-CCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCc---CcCcCCCCCCCCCCCCccEEEcCCCccccc---
Q 039564           11 FLKQQK-HLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNS---LTGFDQHPSVFPWSSGEFTLDLSSNFLQGP---   83 (485)
Q Consensus        11 ~~~~l~-~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~---   83 (485)
                      +|.+++ .|+.+.+..+ ++.....+|.  ++.+|+.+.+..|.   ++.+...  .|..+..|+.+.+..+ ++.+   
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~--~C~~L~~i~~~~n~p~~l~~Ig~~--aF~~c~~L~~i~~~~~-~~~I~~~  131 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFY--NCTSLKRVTIQDNKPSCVKKIGRQ--AFMFCSELTDIPILDS-VTEIDSE  131 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTT--TCTTCCEEEEGGGCCCCCCEECTT--TTTTCTTCCBCGGGTT-CSEECTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhh--CCccCceEeecCCCCCeeeEechh--hchhcccceeeccCCc-cceehhh
Confidence            677774 5899999754 5545566787  88999999998764   5544333  4555544476666544 2222   


Q ss_pred             CCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcc
Q 039564           84 IPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS  163 (485)
Q Consensus        84 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~  163 (485)
                      ....+.+|+.+.+..+. ......+|..+..|+.+.+..+ ++ .+..      .+|.. ..|+.+.+..+-.. .....
T Consensus       132 aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~------~aF~~-~~l~~i~ip~~~~~-i~~~a  200 (394)
T 4gt6_A          132 AFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VT-AIEE------RAFTG-TALTQIHIPAKVTR-IGTNA  200 (394)
T ss_dssp             TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC-EECT------TTTTT-CCCSEEEECTTCCE-ECTTT
T ss_pred             hhhhhccccccccccee-eeecccceecccccccccccce-ee-Eecc------ccccc-cceeEEEECCcccc-cccch
Confidence            22237778888886543 3355567778888888887655 33 2222      23332 56777777655433 45566


Q ss_pred             ccCCCCCcEEEccCCcccCCcChhhh-------------CCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccC
Q 039564          164 LANCAVLEIIDLGNNQIIDTFPAWLG-------------TLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSF  230 (485)
Q Consensus       164 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-------------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  230 (485)
                      |..+.+++......+.........+.             ....+..+.+... +...-...|  ..+..|+.+.+.++-.
T Consensus       201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF--~~c~~L~~i~lp~~~~  277 (394)
T 4gt6_A          201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAF--DSCAYLASVKMPDSVV  277 (394)
T ss_dssp             TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTT--TTCSSCCEEECCTTCC
T ss_pred             hhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEccccee--eecccccEEecccccc
Confidence            77777777776655433211111111             1122222222211 110111122  5667788887765432


Q ss_pred             CccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCccc
Q 039564          231 TGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE  310 (485)
Q Consensus       231 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  310 (485)
                        .+....|..+..|+.                                                    +.+. +.+...
T Consensus       278 --~I~~~aF~~c~~L~~----------------------------------------------------i~l~-~~i~~I  302 (394)
T 4gt6_A          278 --SIGTGAFMNCPALQD----------------------------------------------------IEFS-SRITEL  302 (394)
T ss_dssp             --EECTTTTTTCTTCCE----------------------------------------------------EECC-TTCCEE
T ss_pred             --eecCccccccccccc----------------------------------------------------ccCC-Cccccc
Confidence              344444555444433                                                    3332 222223


Q ss_pred             CchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564          311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL  379 (485)
Q Consensus       311 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l  379 (485)
                      ....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++..
T Consensus       303 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          303 PESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            3345666666777776654 44344556666777777776543 4444455667777777777666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=8.5e-10  Score=105.40  Aligned_cols=89  Identities=15%  Similarity=0.040  Sum_probs=45.3

Q ss_pred             hcCCCCCCEEEcccCcccccCCCc--cccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcCh
Q 039564          109 ICNLSSLYILDLSDNNLSGELPRC--LGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA  186 (485)
Q Consensus       109 ~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  186 (485)
                      ...+++|+.|.+........--..  .+.+...+..+++|+.|++++|.-. .++. +. +++|++|++..+.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence            445678888877654321000000  0112123344577777777766311 1222 32 66777777776665443333


Q ss_pred             hhh--CCCCCCEEEee
Q 039564          187 WLG--TLSELDILVLQ  200 (485)
Q Consensus       187 ~~~--~l~~L~~L~L~  200 (485)
                      .+.  .+++|+.|+|+
T Consensus       212 ~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHSBCTTCCEEEEE
T ss_pred             HHHHccCCCCcEEEEe
Confidence            333  56777777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.94  E-value=1.6e-07  Score=90.89  Aligned_cols=289  Identities=13%  Similarity=0.069  Sum_probs=165.5

Q ss_pred             hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC--C
Q 039564           11 FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP--P   88 (485)
Q Consensus        11 ~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~--~   88 (485)
                      |+....+|+.+.+... ++.....+|.  ++.+|+.+++..+ ++.+..  ..|..+.+ +.+.+..+ ++.+....  .
T Consensus        41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~--~C~~L~~I~lp~~-v~~Ig~--~aF~~c~l-~~i~~~~~-l~~I~~~aF~~  112 (379)
T 4h09_A           41 WYKDRDRISEVRVNSG-ITSIGEANFN--SCYNMTKVTVAST-VTSIGD--GAFADTKL-QSYTGMER-VKKFGDYVFQG  112 (379)
T ss_dssp             TGGGGGGCSEEEECTT-EEEECTTTTT--TCTTCCEEEECTT-CCEECT--TTTTTCCC-CEEEECTT-CCEECTTTTTT
T ss_pred             ccccccCCEEEEeCCC-ccChHHHHhh--CCCCCCEEEeCCc-ceEech--hhhcCCCC-ceEECCce-eeEeccceecc
Confidence            5666778888888643 4434455677  7888888888654 665443  35555555 66666543 32222221  3


Q ss_pred             CCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc----------
Q 039564           89 TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG----------  158 (485)
Q Consensus        89 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~----------  158 (485)
                      .+|+.+.+.++... ....+|.+. +|+.+.+..+ ++ .+..      ..|..+..++.+.+..+....          
T Consensus       113 ~~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~-~i~~------~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~  182 (379)
T 4h09_A          113 TDLDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VT-TIKD------GIGYKAENLEKIEVSSNNKNYVAENYVLYNK  182 (379)
T ss_dssp             CCCSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CC-EECS------CTTTTCTTCCEEEECTTCSSEEEETTEEEET
T ss_pred             CCcccccCCCcccc-ccccccccc-eeeeeeccce-ee-cccc------chhcccccccccccccccceeecccceeccc
Confidence            47888888765332 334455443 5665554433 22 1211      345556777777665543221          


Q ss_pred             --cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCCh
Q 039564          159 --RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPS  236 (485)
Q Consensus       159 --~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  236 (485)
                        .....+.....+..+.+.... ......++....+|+.+.+..+- ...-...+  ..+..|+.+.+..+ ++ .+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f--~~~~~L~~i~lp~~-v~-~I~~  256 (379)
T 4h09_A          183 NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV-TTLGDGAF--YGMKALDEIAIPKN-VT-SIGS  256 (379)
T ss_dssp             TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC-CEECTTTT--TTCSSCCEEEECTT-CC-EECT
T ss_pred             ccceeccccccccccccccccce-eEEeecccccccccceeeeccce-eEEccccc--cCCccceEEEcCCC-cc-EeCc
Confidence              112234455566666555432 23344566677788888776542 21222223  56678888887654 33 4554


Q ss_pred             hhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhc
Q 039564          237 KYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIA  316 (485)
Q Consensus       237 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  316 (485)
                      ..|..+..++                                                    .+.+..+ +.......|.
T Consensus       257 ~aF~~~~~l~----------------------------------------------------~i~l~~~-i~~i~~~aF~  283 (379)
T 4h09_A          257 FLLQNCTALK----------------------------------------------------TLNFYAK-VKTVPYLLCS  283 (379)
T ss_dssp             TTTTTCTTCC----------------------------------------------------EEEECCC-CSEECTTTTT
T ss_pred             cccceeehhc----------------------------------------------------ccccccc-ceeccccccc
Confidence            5455444433                                                    3333222 2223344567


Q ss_pred             cCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564          317 NLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       317 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      ++++|+.+++.++.++.+...+|.++.+|+.++|..+ ++.+...+|.++++|+.+.+..+
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            7788888888777776566677888888888888654 55455667888888887776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.87  E-value=1.8e-07  Score=91.03  Aligned_cols=290  Identities=11%  Similarity=0.101  Sum_probs=177.2

Q ss_pred             hhhCCCCCCEEECCCCc---CCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc--cccCC
Q 039564           11 FLKQQKHLKALDLSSNK---LHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL--QGPIP   85 (485)
Q Consensus        11 ~~~~l~~L~~L~Ls~n~---~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l--~~~~~   85 (485)
                      +|.++.+|+.+.++.|.   ++.....+|.  .+.+|+.+.+..+ ++.+..  ..|..+..|+.+.+..+-.  .....
T Consensus        82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~--~c~~L~~i~~~~~-~~~I~~--~aF~~c~~L~~i~lp~~~~~I~~~~F  156 (394)
T 4gt6_A           82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFM--FCSELTDIPILDS-VTEIDS--EAFHHCEELDTVTIPEGVTSVADGMF  156 (394)
T ss_dssp             TTTTCTTCCEEEEGGGCCCCCCEECTTTTT--TCTTCCBCGGGTT-CSEECT--TTTTTCTTCCEEECCTTCCEECTTTT
T ss_pred             HhhCCccCceEeecCCCCCeeeEechhhch--hcccceeeccCCc-cceehh--hhhhhhcccccccccceeeeecccce
Confidence            78899999999998764   5534456677  7899998888765 454433  3555555559999975422  22222


Q ss_pred             CCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcc--
Q 039564           86 APPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS--  163 (485)
Q Consensus        86 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~--  163 (485)
                      ..+..|+.+.+.++ +...-..+|.. ..|+.+.+..+-.. ...       .+|..+.+++......+.... ....  
T Consensus       157 ~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~-------~af~~c~~l~~~~~~~~~~~~-~~~~~~  225 (394)
T 4gt6_A          157 SYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGT-------NAFSECFALSTITSDSESYPA-IDNVLY  225 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECT-------TTTTTCTTCCEEEECCSSSCB-SSSCEE
T ss_pred             ecccccccccccce-eeEeccccccc-cceeEEEECCcccc-ccc-------chhhhccccceeccccccccc-ccceee
Confidence            33788999988765 44344556654 67888887655322 111       446666777777665544331 1111  


Q ss_pred             ------------ccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCC
Q 039564          164 ------------LANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       164 ------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  231 (485)
                                  +.....+..+.+.. .+......+|..+.+|+.+.+..+... .-...+  ..+++|+.+.+. +.+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF--~~c~~L~~i~l~-~~i~  300 (394)
T 4gt6_A          226 EKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAF--MNCPALQDIEFS-SRIT  300 (394)
T ss_dssp             EECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTT--TTCTTCCEEECC-TTCC
T ss_pred             cccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccc--ccccccccccCC-Cccc
Confidence                        11223444555443 233445567888899999988765432 222233  677889999886 3444


Q ss_pred             ccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccC
Q 039564          232 GNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEI  311 (485)
Q Consensus       232 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  311 (485)
                       .++...|..+.+|+.                                                    +++..+ ++..-
T Consensus       301 -~I~~~aF~~c~~L~~----------------------------------------------------i~lp~~-v~~I~  326 (394)
T 4gt6_A          301 -ELPESVFAGCISLKS----------------------------------------------------IDIPEG-ITQIL  326 (394)
T ss_dssp             -EECTTTTTTCTTCCE----------------------------------------------------EECCTT-CCEEC
T ss_pred             -ccCceeecCCCCcCE----------------------------------------------------EEeCCc-ccEeh
Confidence             666666766665444                                                    444322 33344


Q ss_pred             chhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcc
Q 039564          312 PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL  379 (485)
Q Consensus       312 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l  379 (485)
                      ..+|.++.+|+.+.|..+ ++.+-..+|.++++|+.+++.++....   ..+.....|+.+.+..|.+
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            557888899999999765 665566789999999999998876442   4567778888888876654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=3.2e-09  Score=101.38  Aligned_cols=104  Identities=14%  Similarity=0.075  Sum_probs=48.8

Q ss_pred             CCCCEEECCCCcCCC-CC-------CcccccCCCCCCcEEEccCCcCcC-----cCC--CCCCCCCCCCccEEEcCCCcc
Q 039564           16 KHLKALDLSSNKLHG-NI-------PKWLLNPSMQNFSYLNLSKNSLTG-----FDQ--HPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~-~~-------p~~~~~~~l~~L~~L~Ls~n~l~~-----~~~--~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      ..++.|.+......+ ..       ..+..  .+++|+.|.+.......     ...  ...+....+.|+.|++++|.-
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~--~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~  184 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKE--KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN  184 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHH--HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhh--hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence            456777777655432 11       22233  46788888886643211     100  001122233446666665521


Q ss_pred             cccCCCCCCCCcEEEccCCcccccCChhhc--CCCCCCEEEcc
Q 039564           81 QGPIPAPPTKTRHYLVSKNNLTGEIPSWIC--NLSSLYILDLS  121 (485)
Q Consensus        81 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~L~  121 (485)
                      ....+...++|++|++..+.+.......++  .+++|+.|+|+
T Consensus       185 l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          185 LSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             ceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            111111245666666665555433223333  45666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.75  E-value=1.5e-06  Score=83.92  Aligned_cols=65  Identities=11%  Similarity=0.076  Sum_probs=38.6

Q ss_pred             chhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564          312 PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       312 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      ...|.++.+|+.+.+..+ +......+|.++.+|+.+++.++.++.+...+|.++.+|+.+.+..+
T Consensus       256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            344556666666666543 33344455666666666666666666555566666666666666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=2.3e-08  Score=86.15  Aligned_cols=120  Identities=12%  Similarity=0.043  Sum_probs=61.4

Q ss_pred             hhhcCCCCCCEEEcccC-cccccCCCccccCcccccCCCCccEEEccCCccccc----CCccccCCCCCcEEEccCCccc
Q 039564          107 SWICNLSSLYILDLSDN-NLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR----IPKSLANCAVLEIIDLGNNQII  181 (485)
Q Consensus       107 ~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~  181 (485)
                      ..+...+.|++|+|++| .+....-   ..+...+...++|++|+|++|.+.+.    +...+...++|++|+|++|.+.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~---~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTL---KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHH---HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHH---HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34445566666666665 5542211   11112333445666666666665532    2233344456666666666664


Q ss_pred             CC----cChhhhCCCCCCEEEe--ecccccccc----CCccccCCCCCccEEEccCccCC
Q 039564          182 DT----FPAWLGTLSELDILVL--QSNNFHGEI----KEHKMECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       182 ~~----~~~~~~~l~~L~~L~L--~~n~l~~~~----~~~~~~~~l~~L~~L~l~~n~l~  231 (485)
                      +.    +..++...++|++|++  ++|.+...-    ...+  ...++|++|++++|.+.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L--~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML--EKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH--HHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH--HhCCCcCEEeccCCCCC
Confidence            32    2334445566666666  566665321    1112  23456777777777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=2.9e-08  Score=85.50  Aligned_cols=115  Identities=8%  Similarity=0.081  Sum_probs=87.4

Q ss_pred             CCCCcEEEccCC-ccccc----CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc---
Q 039564           88 PTKTRHYLVSKN-NLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR---  159 (485)
Q Consensus        88 ~~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~---  159 (485)
                      .+.|++|++++| .+...    +...+...++|++|+|++|.+.......++   ..+...++|++|+|++|.|.+.   
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~---~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA---EMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---HHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH---HHHHhCCCcCEEECcCCcCCHHHHH
Confidence            678999999999 88743    345566788999999999998743222222   3345568899999999999854   


Q ss_pred             -CCccccCCCCCcEEEc--cCCcccCC----cChhhhCCCCCCEEEeeccccc
Q 039564          160 -IPKSLANCAVLEIIDL--GNNQIIDT----FPAWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       160 -~~~~~~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  205 (485)
                       +...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             4566778889999999  88988654    3345556789999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=6.6e-07  Score=81.01  Aligned_cols=67  Identities=27%  Similarity=0.328  Sum_probs=38.5

Q ss_pred             ccCCCCCEEeCcCceecc--cCCccccCCCCCCEEECCCCcCcccCcccccCCC--CCCEEeccCCcccccCC
Q 039564          316 ANLKGLQVLSLANNNLEG--HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLT--FLEFFNVSHNNLTGPIP  384 (485)
Q Consensus       316 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p  384 (485)
                      .++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.  .|+.|++++|++.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            345666666666666664  3344555666666666666666643  1222222  66666666666665444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=3.9e-07  Score=82.50  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             ccccccEEEcCCCcCcc--cCchhhccCCCCCEEeCcCceecccCCccccCCC--CCCEEECCCCcCcccCcc-------
Q 039564          293 IPYILTAVILSSNGFHG--EIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLT--KLESLDLSNNWFSGQIPQ-------  361 (485)
Q Consensus       293 ~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-------  361 (485)
                      .++.|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|.+.+.+|+       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            36789999999999987  4557778899999999999999864  3344444  899999999999876652       


Q ss_pred             cccCCCCCCEEe
Q 039564          362 QLTGLTFLEFFN  373 (485)
Q Consensus       362 ~~~~l~~L~~L~  373 (485)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            467788888776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=2e-06  Score=72.16  Aligned_cols=84  Identities=11%  Similarity=0.107  Sum_probs=68.1

Q ss_pred             ccccEEEcCCCcCcccCchhhccCCCCCEEeCcCce-ecccCCccccCC----CCCCEEECCCC-cCcccCcccccCCCC
Q 039564          295 YILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNN-LEGHIPSCFGDL----TKLESLDLSNN-WFSGQIPQQLTGLTF  368 (485)
Q Consensus       295 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N-~l~~~~p~~~~~l~~  368 (485)
                      ..|+.||++++.++..--..+..+++|++|+|++|. ++..--..+..+    ++|++|+|++| +++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            359999999999887766778899999999999995 665444445554    47999999999 488655566788999


Q ss_pred             CCEEeccCCc
Q 039564          369 LEFFNVSHNN  378 (485)
Q Consensus       369 L~~L~l~~N~  378 (485)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=8e-06  Score=68.50  Aligned_cols=84  Identities=17%  Similarity=0.083  Sum_probs=50.9

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCcEEEccCCc-ccCCcChhhhCC----CCCCEEEeeccc-cccccCCccccCCC
Q 039564          144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ-IIDTFPAWLGTL----SELDILVLQSNN-FHGEIKEHKMECGF  217 (485)
Q Consensus       144 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~l  217 (485)
                      ..|+.||++++.+++.--..+..+++|++|+|++|. +++.--..++.+    ++|++|++++|. ++..--..+  ..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--HHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--GGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--hcC
Confidence            357777777777665555556677777777777774 544333444443    357777777764 443222223  346


Q ss_pred             CCccEEEccCcc
Q 039564          218 PKLRIVDLSNNS  229 (485)
Q Consensus       218 ~~L~~L~l~~n~  229 (485)
                      ++|+.|+++++.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            777777777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.41  E-value=5.1e-05  Score=64.85  Aligned_cols=63  Identities=5%  Similarity=0.068  Sum_probs=30.2

Q ss_pred             ccCCCCccEEEccCCcccccC----CccccCCCCCcEEEccCCcccCCc----ChhhhCCCCCCEEEeecc
Q 039564          140 FMNGSNLGIIDMSHNLLQGRI----PKSLANCAVLEIIDLGNNQIIDTF----PAWLGTLSELDILVLQSN  202 (485)
Q Consensus       140 ~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n  202 (485)
                      +.....|+.|+|++|.|.+.-    .+.+..-+.|++|+|++|.|.+.-    ..++..-+.|++|+|++|
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            334455555555555555322    222334455666666666554321    122333445666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.21  E-value=0.00058  Score=54.40  Aligned_cols=57  Identities=19%  Similarity=0.272  Sum_probs=36.9

Q ss_pred             EEeCcCceec-ccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          323 VLSLANNNLE-GHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       323 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            5666666665 24444332  357777777777776555667777777777777666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.17  E-value=0.00079  Score=53.64  Aligned_cols=56  Identities=25%  Similarity=0.228  Sum_probs=41.1

Q ss_pred             cEEEcCCCccc--ccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCccc
Q 039564           71 FTLDLSSNFLQ--GPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS  126 (485)
Q Consensus        71 ~~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  126 (485)
                      .+++.+++.++  ......+.+|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777777776  333344667888888888888666667888888888888888765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.97  E-value=0.00012  Score=62.60  Aligned_cols=114  Identities=12%  Similarity=0.144  Sum_probs=66.7

Q ss_pred             CCCCcEEEccCC-ccccc----CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc---
Q 039564           88 PTKTRHYLVSKN-NLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR---  159 (485)
Q Consensus        88 ~~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~---  159 (485)
                      -+.|++|+|++| .+...    +...+..-+.|+.|+|++|++....-..++   .++...+.|++|+|+.|.|.+.   
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA---~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI---ELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH---HHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH---HHHhcCCccCeEecCCCcCCHHHHH
Confidence            345666666654 55421    334455667777777777777644333332   3344557777778877777643   


Q ss_pred             -CCccccCCCCCcEEEccCC---cccC----CcChhhhCCCCCCEEEeecccc
Q 039564          160 -IPKSLANCAVLEIIDLGNN---QIID----TFPAWLGTLSELDILVLQSNNF  204 (485)
Q Consensus       160 -~~~~~~~l~~L~~L~Ls~n---~l~~----~~~~~~~~l~~L~~L~L~~n~l  204 (485)
                       +-+.+..-+.|++|+|++|   .+..    .+..++..-+.|+.|+++.|..
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             2344555666888888754   2322    1233455567788888776654

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=82.57  E-value=0.098  Score=31.94  Aligned_cols=7  Identities=43%  Similarity=0.738  Sum_probs=2.7

Q ss_pred             eeeehhh
Q 039564          446 GGVVAGL  452 (485)
Q Consensus       446 ~~~~~~~  452 (485)
                      +++++++
T Consensus        15 ~gVVgGv   21 (44)
T 2ks1_B           15 TGMVGAL   21 (44)
T ss_dssp             HHHHHHH
T ss_pred             eehhHHH
Confidence            3333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	485
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 92.9 bits (229), Expect = 2e-21
 Identities = 64/263 (24%), Positives = 92/263 (34%), Gaps = 11/263 (4%)

Query: 149 IDMSHNLLQGR--IPKSLANCAVLEIIDL-GNNQIIDTFPAWLGTLSELDILVLQSNNFH 205
           +D+S   L     IP SLAN   L  + + G N ++   P  +  L++L  L +   N  
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 206 GEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFS 265
                         L  +D S N+ +G LP       N +         +  N +S    
Sbjct: 115 --GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI------TFDGNRISGAIP 166

Query: 266 FDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLS 325
             +  +   +       N+           +  A +  S        + +          
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 326 LANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE 385
               N         G    L  LDL NN   G +PQ LT L FL   NVS NNL G IP+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 386 ANQFPTFDSSSFDGNSGLCGKPL 408
                 FD S++  N  LCG PL
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.0 bits (206), Expect = 2e-18
 Identities = 49/260 (18%), Positives = 81/260 (31%), Gaps = 17/260 (6%)

Query: 96  VSKNNLTG--EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSH 153
           +S  NL     IPS + NL  L  L +   N        +G         + L  + ++H
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------NLVGPIPPAIAKLTQLHYLYITH 110

Query: 154 NLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKM 213
             + G IP  L+    L  +D   N +  T P  + +L  L  +    N   G I +   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 214 ECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFP 273
                   +    N       P+        +                S  +        
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG 333
           +                           L +N  +G +P  +  LK L  L+++ NNL G
Sbjct: 231 NSLAFDLGKVGLSKNLNGL--------DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 334 HIPSCFGDLTKLESLDLSNN 353
            IP   G+L + +    +NN
Sbjct: 283 EIPQ-GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.4 bits (129), Expect = 9e-09
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 88  PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLG 147
                   +  N + G +P  +  L  L+ L++S NNL GE+P+  GN            
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL-------QRFD 294

Query: 148 IIDMSHNLLQGRIP 161
           +   ++N      P
Sbjct: 295 VSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 140 FMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVL 199
                NL  +D+ +N + G +P+ L     L  +++  N +    P   G L   D+   
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY 298

Query: 200 QSNNFHGEIKEHKMECGFP 218
            +N            CG P
Sbjct: 299 ANNKCL---------CGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNS-LTGF 57
             P  L Q K L +L++S N L G IP+     ++Q F     + N  L G 
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 3   CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
            +L      +   K+L  LDL +N+++G +P+ L    ++    LN+S N+L G  + P 
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSLNVSFNNLCG--EIPQ 286

Query: 63  VFPWSSGEFTLDLSSNFLQGPIPAPP 88
                  +     ++N      P P 
Sbjct: 287 GGNLQRFD-VSAYANNKCLCGSPLPA 311

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 4e-17
 Identities = 58/369 (15%), Positives = 109/369 (29%), Gaps = 36/369 (9%)

Query: 16  KHLKALDLSSNKLHG--NIPKWLLNPSMQNFSYLNLSKNSLTGFD-----QHPSVFPWSS 68
             +  L      +     +        + N + +N S N LT                ++
Sbjct: 44  DQVTTLQADRLGIKSIDGVEY------LNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 97

Query: 69  GEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
            +         L           +   +        +     + +++  +       S +
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188
                   +D     +   +  +  +  +      LA    LE +   NNQI D  P  +
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV 248
            T   LD L L  N     +K+         L  +DL+NN  +   P             
Sbjct: 218 LT--NLDELSLNGNQ----LKDIGTLASLTNLTDLDLANNQISNLAP-----------LS 260

Query: 249 NASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFH 308
             ++L  ++   +   +                 N+ + +S       LT + L  N   
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 309 GEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTF 368
              P  +++L  LQ L  ANN +     S   +LT +  L   +N  S   P  L  LT 
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTR 374

Query: 369 LEFFNVSHN 377
           +    ++  
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 3   CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPS 62
            N  +    L    +L  LDL++N++    P       +   + L L  N ++       
Sbjct: 228 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQISNI---SP 280

Query: 63  VFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSD 122
           +   ++        +        +      +  +  NN++   P  + +L+ L  L  ++
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 338

Query: 123 NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNN 178
           N +S      L N        +N+  +   HN +    P  LAN   +  + L + 
Sbjct: 339 NKVSD--VSSLANL-------TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 3e-11
 Identities = 47/201 (23%), Positives = 74/201 (36%), Gaps = 22/201 (10%)

Query: 2   SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHP 61
           + N       L    +L  L L+ N+L   I       S+ N + L+L+ N ++      
Sbjct: 205 TNNQISDITPLGILTNLDELSLNGNQLKD-IGTL---ASLTNLTDLDLANNQISNL---- 256

Query: 62  SVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLS 121
           +     +    L L +N +    P         L    N   E  S I NL +L  L L 
Sbjct: 257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLY 315

Query: 122 DNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQII 181
            NN+S   P           + + L  +  ++N +      SLAN   +  +  G+NQI 
Sbjct: 316 FNNISDISP---------VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 182 DTFPAWLGTLSELDILVLQSN 202
           D  P  L  L+ +  L L   
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 6e-10
 Identities = 58/315 (18%), Positives = 96/315 (30%), Gaps = 41/315 (13%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
            K N+T  +     +L  +  L      +            D     +NL  I+ S+N L
Sbjct: 30  GKTNVTDTVS--QTDLDQVTTLQADRLGIKS---------IDGVEYLNNLTQINFSNNQL 78

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECG 216
               P  L N   L  I + NNQI D  P    T      L          +K       
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 217 FP----KLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYF 272
                  +  +   +   +    S   Q  +     N + L  +    +           
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 273 PHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLE 332
            +    +  +N+   ++   I   L  + L+ N        ++A+L  L  L LANN + 
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 333 GHIPSCFGDLTKLESLDLSNNWFSGQIP--------------------QQLTGLTFLEFF 372
              P     LTKL  L L  N  S   P                      ++ L  L + 
Sbjct: 255 NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 373 NVSHNNLTGPIPEAN 387
            +  NN++   P ++
Sbjct: 313 TLYFNNISDISPVSS 327

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 48/288 (16%), Positives = 97/288 (33%), Gaps = 25/288 (8%)

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
            +  S   L+      P  T    +  N +T        NL +L+ L L +N +S   P 
Sbjct: 14  VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL 191
                         L  + +S N L+    K       L +     N+I     +    L
Sbjct: 74  AFAPL-------VKLERLYLSKNQLKELPEKMPKTLQELRV---HENEITKVRKSVFNGL 123

Query: 192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNAS 251
           +++ ++ L +N       E+    G  KL  + +++ + T  +P             + +
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--------SLT 174

Query: 252 QLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEI 311
           +L    N ++   +    G        L+ ++   + +           +  +N    ++
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234

Query: 312 PTSIANLKGLQVLSLANNNLEG------HIPSCFGDLTKLESLDLSNN 353
           P  +A+ K +QV+ L NNN+          P           + L +N
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 2e-11
 Identities = 47/252 (18%), Positives = 88/252 (34%), Gaps = 12/252 (4%)

Query: 144 SNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN 203
            +  ++D+ +N +         N   L  + L NN+I    P     L +L+ L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 204 FHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSY 263
                ++          + + +  N  T  +    F   N M  V    L       S  
Sbjct: 91  LKELPEKMPKTL-----QELRVHENEITK-VRKSVFNGLNQMIVVE---LGTNPLKSSGI 141

Query: 264 FSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQV 323
            +  F G     Y  +  +N   +   + +P  LT + L  N        S+  L  L  
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTI--PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 324 LSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPI 383
           L L+ N++         +   L  L L+NN    ++P  L    +++   + +NN++   
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 384 PEANQFPTFDSS 395
                 P +++ 
Sbjct: 259 SNDFCPPGYNTK 270

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 2e-11
 Identities = 44/290 (15%), Positives = 81/290 (27%), Gaps = 30/290 (10%)

Query: 72  TLDLSSNFLQGPIPAPP---TKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGE 128
            LDL +N +                 ++  N ++   P     L  L  L LS N L  E
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 93

Query: 129 LPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWL 188
           LP  +            L + +     ++  +   L    V+E+      +         
Sbjct: 94  LPEKM------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAF 146

Query: 189 GTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFV 248
             + +L  + +   N          +   P L  + L  N  T    +      N  K  
Sbjct: 147 QGMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK-- 199

Query: 249 NASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFH 308
               L    N +S+  +             L  +   ++         +  V L +N   
Sbjct: 200 ----LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255

Query: 309 G------EIPTSIANLKGLQVLSLANNNLEGH--IPSCFGDLTKLESLDL 350
                    P           +SL +N ++     PS F  +    ++ L
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 44/238 (18%), Positives = 69/238 (28%), Gaps = 35/238 (14%)

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
             ++DL NN+I +        L  L  L+L +N                KL  + LS N 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKNQ 90

Query: 230 FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLS 289
               LP K  +           +LR   N ++      F G        L  +       
Sbjct: 91  LK-ELPEKMPKTL--------QELRVHENEITKVRKSVFNGLNQMIVVELGTNP------ 135

Query: 290 YEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLD 349
                              G    +   +K L  + +A+ N+   IP        L  L 
Sbjct: 136 ---------------LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELH 177

Query: 350 LSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP 407
           L  N  +      L GL  L    +S N+++     +             N+ L   P
Sbjct: 178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 48/269 (17%), Positives = 84/269 (31%), Gaps = 33/269 (12%)

Query: 16  KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDL 75
                LDL +NK+         N  ++N   L L  N ++     P  F        L L
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKISKI--SPGAFAPLVKLERLYL 86

Query: 76  SSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGN 135
           S N L+      P   +   V +N +T    S    L+ + +++L  N L     +  G 
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-----KSSGI 141

Query: 136 FSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELD 195
            +  F     L  I ++   +         +   L  + L  N+I     A L  L+ L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 196 ILVLQSNNFHGEIKEHKMEC---------------------GFPKLRIVDLSNNSFTGNL 234
            L L  N+                                     +++V L NN+ +   
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 235 PSKYFQCWNAMKFVNASQLRYMRNFLSSY 263
            + +       K  + S +    N +  +
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS 356
           L  V  S  G   ++P  +       +L L NN +       F +L  L +L L NN  S
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 357 GQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLC 404
              P     L  LE   +S N L     +  +         +  + + 
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 116

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 33/220 (15%)

Query: 9   PNFLKQQKHLKALDLSSNKL-------------------HGNIPKWLLNPSMQNFSYLNL 49
           P        L+ L LS N+L                        +  +   +     + L
Sbjct: 72  PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 131

Query: 50  SKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWI 109
             N L         F        + ++   +       P       +  N +T    + +
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL 191

Query: 110 CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169
             L++L  L LS N+            + +  N  +L  + +++N L  ++P  LA+   
Sbjct: 192 KGLNNLAKLGLSFNS-------ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 170 LEIIDLGNNQIID------TFPAWLGTLSELDILVLQSNN 203
           ++++ L NN I          P +    +    + L SN 
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 10/152 (6%)

Query: 8   FPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWS 67
                +  K L  + ++   +   IP+ L      + + L+L  N +T  D   +     
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLP----PSLTELHLDGNKITKVD--AASLKGL 194

Query: 68  SGEFTLDLSSNFLQGPIPAPPTKTRH--YLVSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
           +    L LS N +          T H   L   NN   ++P  + +   + ++ L +NN+
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ 157
           S  +              ++   + +  N +Q
Sbjct: 255 S-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 62.1 bits (149), Expect = 4e-11
 Identities = 45/311 (14%), Positives = 93/311 (29%), Gaps = 35/311 (11%)

Query: 96  VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNL 155
           ++   L+  +P    +L SL     S N+L+ ELP    +     ++ +NL  +     L
Sbjct: 45  LNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 99

Query: 156 LQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE---------LDILVLQSNNFHG 206
           L+     +     + E+ +    +IID     L  L +              L+      
Sbjct: 100 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQ 159

Query: 207 EIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSF 266
            +                        ++ +         +  N   L  +    +   + 
Sbjct: 160 NLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL 219

Query: 267 DFYGYFPHYYYSLTMSNKGQMLSYEKIPYIL------------TAVILSSNGFHGEIPTS 314
                                   + + ++                +   N    EI + 
Sbjct: 220 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 279

Query: 315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNV 374
                 L+ L+++NN L   +P+      +LE L  S N  + ++P+    L  L   +V
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLKQL---HV 331

Query: 375 SHNNLTGPIPE 385
            +N L    P+
Sbjct: 332 EYNPLRE-FPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 56/363 (15%), Positives = 107/363 (29%), Gaps = 50/363 (13%)

Query: 15  QKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLD 74
            +    L+L++  L        L     +   L  S NSLT                   
Sbjct: 37  DRQAHELELNNLGLSS------LPELPPHLESLVASCNSLT------------------- 71

Query: 75  LSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGEL-PRCL 133
                    +P  P   +  LV  NN    + +       L  L +S+N L      +  
Sbjct: 72  --------ELPELPQSLKSLLVDNNN----LKALSDLPPLLEYLGVSNNQLEKLPELQNS 119

Query: 134 GNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSE 193
                  ++ ++L  +      L+     +     + E+ +L     I      L  L +
Sbjct: 120 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD 179

Query: 194 LDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNN---SFTGNLPSKYFQCWNAMKFVNA 250
           L + +      +  ++E       P L  +   NN   +     PS            + 
Sbjct: 180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL 239

Query: 251 SQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGE 310
            +L     FL    +                ++  ++ S   +P  L  + +S+N    E
Sbjct: 240 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-E 298

Query: 311 IPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLE 370
           +P        L+ L  + N+L   +P        L+ L +  N    + P     +  L 
Sbjct: 299 LPALPPR---LERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

Query: 371 FFN 373
             +
Sbjct: 351 MNS 353

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (138), Expect = 3e-10
 Identities = 32/249 (12%), Positives = 74/249 (29%), Gaps = 16/249 (6%)

Query: 106 PSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA 165
              IC+ S+  +    ++ ++ E+P  L           N   +      L+     + +
Sbjct: 2   HHRICHCSNR-VFLCQESKVT-EIPSDLP---------RNAIELRFVLTKLRVIQKGAFS 50

Query: 166 NCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDL 225
               LE I++  N +++   A + +       +      +      +     P L+ + +
Sbjct: 51  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 110

Query: 226 SNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKG 285
           SN                 +        +   N  +   +      F      L  +   
Sbjct: 111 SNTGIKHLPDVHKIHSLQKVLLDI----QDNINIHTIERNSFVGLSFESVILWLNKNGIQ 166

Query: 286 QMLSYEKIPYILTAVILSSNGFHGEIPTSI-ANLKGLQVLSLANNNLEGHIPSCFGDLTK 344
           ++ +       L  + LS N    E+P  +     G  +L ++   +         +L K
Sbjct: 167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 226

Query: 345 LESLDLSNN 353
           L +    N 
Sbjct: 227 LRARSTYNL 235

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 34/242 (14%), Positives = 73/242 (30%), Gaps = 11/242 (4%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
               L   P  +      + + L  N++                 +L+ +  +       
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDL 120
             +      + + +     +         +     + +  L    P     L++L  L L
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI 180
            DN L            DTF +  NL  + +  N +     ++      L+ + L  N++
Sbjct: 137 QDNALQALPD-------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 181 IDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQ 240
               P     L  L  L L +NN        +       L+ + L++N +  +  ++   
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247

Query: 241 CW 242
            W
Sbjct: 248 AW 249

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 47/316 (14%), Positives = 87/316 (27%), Gaps = 41/316 (12%)

Query: 66  WSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
           ++  + T       LQ      P  ++   +  N ++    +      +L IL L  N L
Sbjct: 9   YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68

Query: 126 SGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP 185
           +          +               +  L+   P +      L  + L    + +  P
Sbjct: 69  ARIDAAAFTGLALLEQL------DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 186 AWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAM 245
                L+ L  L LQ N       +   +     L  + L  N  +              
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDL--GNLTHLFLHGNRISSVPERA-------- 172

Query: 246 KFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN 305
            F     L  +                PH +  L       +                +N
Sbjct: 173 -FRGLHSLDRLL-----LHQNRVAHVHPHAFRDLGRLMTLYL---------------FAN 211

Query: 306 GFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTG 365
                   ++A L+ LQ L L +N       +       L+    S++     +PQ+L G
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 366 LTFLEFFNVSHNNLTG 381
                   ++ N+L G
Sbjct: 271 RDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 37/238 (15%), Positives = 65/238 (27%), Gaps = 6/238 (2%)

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
            + I L  N+I     A       L IL L SN                +   +   +N+
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS--DNA 91

Query: 230 FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLS 289
              ++    F     +  ++  +          +       Y      +L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 290 YEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLD 349
              + ++     L  N        +   L  L  L L  N +    P  F DL +L +L 
Sbjct: 152 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 350 LSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKP 407
           L  N  S    + L  L  L++  ++ N           +          +   C  P
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 45/278 (16%), Positives = 79/278 (28%), Gaps = 21/278 (7%)

Query: 110 CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV 169
           C              L   +P  +          +    I +  N +      S   C  
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGIP---------AASQRIFLHGNRISHVPAASFRACRN 57

Query: 170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS 229
           L I+ L +N +     A    L+ L+ L L  N     +          +L  + L    
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCG 116

Query: 230 FTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLS 289
                P  +                   N L +     F       +  L   N+   + 
Sbjct: 117 LQELGPGLFRGLAALQYL------YLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVP 169

Query: 290 YEKIPYI--LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLES 347
                 +  L  ++L  N      P +  +L  L  L L  NNL          L  L+ 
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 348 LDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE 385
           L L++N +     +      +L+ F  S + +   +P+
Sbjct: 230 LRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQ 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 5e-09
 Identities = 39/288 (13%), Positives = 85/288 (29%), Gaps = 33/288 (11%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
           +  NL  ++   + +   +       + +   L      F         +  +D+S++++
Sbjct: 8   TGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF--------RVQHMDLSNSVI 58

Query: 157 QGR-IPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMEC 215
           +   +   L+ C+ L+ + L   ++ D     L   S L  L L   +   E     +  
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 216 GFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHY 275
              +L  ++LS          +      +      +   Y +N   S  S          
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 276 YYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLAN-NNLEGH 334
           +  L+ S                           +       L  LQ LSL+   ++   
Sbjct: 179 HLDLSDSVM----------------------LKNDCFQEFFQLNYLQHLSLSRCYDIIPE 216

Query: 335 IPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGP 382
                G++  L++L +      G +      L  L+        +  P
Sbjct: 217 TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 3e-08
 Identities = 39/296 (13%), Positives = 90/296 (30%), Gaps = 37/296 (12%)

Query: 72  TLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR 131
           TLDL+                       NL  ++   + +   +       + +   L  
Sbjct: 4   TLDLTG---------------------KNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAE 41

Query: 132 CLGNFSDTFMNGSNLGIIDMSHNLLQGR-IPKSLANCAVLEIIDLGNNQIIDTFPAWLGT 190
               F         +  +D+S+++++   +   L+ C+ L+ + L   ++ D     L  
Sbjct: 42  HFSPF--------RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

Query: 191 LSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNA 250
            S L  L L   +   E     +     +L  ++LS          +      +      
Sbjct: 94  NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 153

Query: 251 SQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNG---F 307
           +   Y +N   S  S          +  L+ S   +   +++   +     LS +     
Sbjct: 154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 213

Query: 308 HGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQL 363
             E    +  +  L+ L +     +G +         L  L ++ + F+      +
Sbjct: 214 IPETLLELGEIPTLKTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTIARPTI 266

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 41/306 (13%), Positives = 86/306 (28%), Gaps = 43/306 (14%)

Query: 104 EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIP-- 161
            + + +    S+  + LS N +  E  R L     +  +       D+    ++  IP  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 162 -----KSLANCAVLEIIDLGNNQIIDTFP---------------AWLGTLSELDILVLQS 201
                ++L  C  L  + L +N    T                  +L           + 
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 202 NNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLS 261
                E+  +K     P LR +    N        ++ + + + + ++  ++        
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 262 SYFSFDFYG--------YFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT 313
                   G               + T      +    K    L  + L+          
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 314 SIAN------LKGLQVLSLANNNLEGHIPSCFGD-----LTKLESLDLSNNWFS--GQIP 360
           ++ +        GLQ L L  N +E              +  L  L+L+ N FS    + 
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321

Query: 361 QQLTGL 366
            ++  +
Sbjct: 322 DEIREV 327

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 38/214 (17%), Positives = 57/214 (26%), Gaps = 14/214 (6%)

Query: 166 NCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDL 225
             A    ++     +    P  L    +  IL L  N  +           + +L  ++L
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATL--MPYTRLTQLNL 62

Query: 226 SNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKG 285
                      +  +            L    N L S                       
Sbjct: 63  DRA--------ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 286 QMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKL 345
             L   +    L  + L  N      P  +     L+ LSLANNNL          L  L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 346 ESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNL 379
           ++L L  N     IP+   G   L F  +  N  
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 38/205 (18%), Positives = 53/205 (25%), Gaps = 14/205 (6%)

Query: 1   RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQH 60
              NL   P  L   K    L LS N L+      L+       + LNL +         
Sbjct: 18  DKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMP--YTRLTQLNLDRAE--LTKLQ 71

Query: 61  PSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDL 120
                   G   L  +       +           VS N LT      +  L  L  L L
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 121 SDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQI 180
             N                      L  + +++N L       L     L+ + L  N +
Sbjct: 132 KGNE-------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 181 IDTFPAWLGTLSELDILVLQSNNFH 205
             T P        L    L  N + 
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 38/215 (17%), Positives = 58/215 (26%), Gaps = 41/215 (19%)

Query: 66  WSSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNL 125
             +    ++     L    P  P  T    +S+N L     + +   + L  L+L    L
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 126 SGELPRC--------------------------------------LGNFSDTFMNGSNLG 147
           +                                                         L 
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 148 IIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGE 207
            + +  N L+   P  L     LE + L NN + +     L  L  LD L+LQ N+    
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--- 184

Query: 208 IKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCW 242
               K   G   L    L  N +  N    YF+ W
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 32/188 (17%), Positives = 51/188 (27%), Gaps = 8/188 (4%)

Query: 217 FPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYY 276
                I+ LS N             +  +  +N  +    +  +             H  
Sbjct: 30  PKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 277 YSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIP 336
                     + +   +           N        ++  L  LQ L L  N L+   P
Sbjct: 89  LQSLPLLGQTLPALTVLDVS-------FNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 337 SCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSS 396
                  KLE L L+NN  +      L GL  L+   +  N+L               + 
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201

Query: 397 FDGNSGLC 404
             GN  LC
Sbjct: 202 LHGNPWLC 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 3e-07
 Identities = 34/221 (15%), Positives = 55/221 (24%), Gaps = 19/221 (8%)

Query: 165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVD 224
              A    I  G + + DT       L  +  L          +   +       L  ++
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGLE 69

Query: 225 LSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNK 284
           L +N  T   P K       ++                               +      
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 285 GQMLSYEKIPYILTAVIL---------SSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI 335
              + Y  +  I     L         S         T +ANL  L  L   +N +    
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 336 PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH 376
           P     L  L  + L NN  S   P  L   + L    +++
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 17/199 (8%)

Query: 163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRI 222
           S    A     +L    + D        L+ +D ++  +++         +    P +  
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYL----PNVTK 72

Query: 223 VDLSNNSFTG-----NLPSKYFQCWNAMKFVNASQLRYMRNFLS----SYFSFDFYGYFP 273
           + L+ N  T      NL +  +   +  K  + S L+ ++   S         D  G   
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 274 HYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG 333
                       ++     +  +     LS           +A L  LQ L L+ N++  
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192

Query: 334 HIPSCFGDLTKLESLDLSN 352
                   L  L+ L+L +
Sbjct: 193 --LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 10/83 (12%)

Query: 311 IPTSI------ANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLT 364
           +PT I               +L   ++   +     +L  ++ +  +N+         + 
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQ 65

Query: 365 GLTFLEFFNVSHNNLTGPIPEAN 387
            L  +    ++ N LT   P AN
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLAN 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 9e-07
 Identities = 37/400 (9%), Positives = 74/400 (18%), Gaps = 20/400 (5%)

Query: 7   EFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPW 66
           +  + L+    L  L+L SN+L       +L         +                   
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105

Query: 67  SSGEFTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLS 126
           S+      L    L   +              +         +   S          ++ 
Sbjct: 106 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 165

Query: 127 GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPA 186
              P                  +            ++L   +     D   +        
Sbjct: 166 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 225

Query: 187 WLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMK 246
                  L    L                   +   +     +  G              
Sbjct: 226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 285

Query: 247 FVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIP-----------Y 295
              +     + +  +                    S                        
Sbjct: 286 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 345

Query: 296 ILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG----HIPSCFGDLTKLESLDLS 351
            ++   L   G              L+VL LA+ ++       + +       L  LDLS
Sbjct: 346 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 405

Query: 352 NNWFSGQIPQQLTG-----LTFLEFFNVSHNNLTGPIPEA 386
           NN        QL          LE   +     +  + + 
Sbjct: 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 14/143 (9%)

Query: 238 YFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKG-----QMLSYEK 292
             +    ++ +      +     S + S      F           +            +
Sbjct: 307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 366

Query: 293 IPYILTAVILSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGHIPSCFGD-----LT 343
              +L  + L+           +  ++     L+ L L+NN L         +       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 344 KLESLDLSNNWFSGQIPQQLTGL 366
            LE L L + ++S ++  +L  L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 5e-06
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 106 PSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA 165
                  S L +L L+D ++S        + + T +   +L  +D+S+N L       L 
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDS---SCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 166 -----NCAVLEIIDLGNNQIIDTFPAWLGTLSE 193
                   +LE + L +    +     L  L +
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 297 LTAVILSSNGF-HGEIPTSIANLKGLQVLSLANNNLEG----HIPSCFGDLTKLESLDLS 351
           + ++ +             +  L+  QV+ L +  L       I S       L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 352 NNWFSGQIPQQLTGLTFLEFFNVSHNNLTG 381
           +N         +          +   +L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 15/164 (9%), Positives = 36/164 (21%), Gaps = 10/164 (6%)

Query: 118 LDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR----IPKSLANCAVLEII 173
           LD+    LS         +++         ++ +    L       I  +L     L  +
Sbjct: 7   LDIQCEELSDA------RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN 233
           +L +N++ D     +    +     +Q  +                      +      +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 234 LPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYY 277
                      +          +      Y S       P    
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 164

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 43/414 (10%), Positives = 96/414 (23%), Gaps = 46/414 (11%)

Query: 18  LKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLT--GFDQHPSVFPWSSGEFTLDL 75
           +++LD+   +L       LL P +Q    + L    LT        S    +     L+L
Sbjct: 4   IQSLDIQCEELSDARWAELL-PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 76  SSNFLQGPIP---APPTKTRHYLVSKNNLTG-------------------EIPSWICNLS 113
            SN L            +T    + K +L                      +     + +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 114 SLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII 173
            L    L         P+C            +    +   ++L+ +        +  +I 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGN 233
           + G   +          L  L +      + +       +        +   SN      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 234 LPSKYFQCWNAMKFVNASQLRYMR--------NFLSSYFSFDFYGYFPHYYYSLTMSNKG 285
           +        +    +    +                                      + 
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 286 QMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI---------P 336
              +  +    L ++ + S  F     +  +++       L        +          
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 337 SCFGDLTKLESLDLSNNWFSGQ----IPQQLTGLTFLEFFNVSHNNLTGPIPEA 386
                 + L  L L++   S      +   L     L   ++S+N L       
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 87  PPTKTRHYLVSKNNLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMN 142
           P +  R   ++  +++      + + +    SL  LDLS+N L       L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES--VRQP 424

Query: 143 GSNLGIIDMSHNLLQGRIPKSLA 165
           G  L  + +        +   L 
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQ 447

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 2/116 (1%)

Query: 294 PYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPS-CFGDLTKLESLDLSN 352
           P+  + +  + +G   +    +   + L  L + N     H+       L +L +L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 353 NWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPL 408
           +      P        L   N+S N L     +  Q  +       GN   C   L
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 5e-05
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 10/139 (7%)

Query: 68  SGEFTLDLSSNFLQG---PIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNN 124
            G   L  + +        +P     T  Y+ ++ +L       +  L  L  L +  + 
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 125 LSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTF 184
                        D F     L  +++S N L+    K++   ++ E++  GN       
Sbjct: 68  -------LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 185 PAWLGTLSELDILVLQSNN 203
             WL    E  +  +    
Sbjct: 121 LRWLQRWEEEGLGGVPEQK 139

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 19  KALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSN 78
           + L L+   L   +   L    +   ++L+LS N L      P           L  S N
Sbjct: 1   RVLHLAHKDL--TVLCHL--EQLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDN 53

Query: 79  FLQGPIPAPPTKTRHYL-VSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGE 128
            L+             L +  N L        + +   L +L+L  N+L  E
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 97  SKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLL 156
           +  +LT  +   +  L  +  LDLS N L                    L ++  S N  
Sbjct: 6   AHKDLT--VLCHLEQLLLVTHLDLSHNRLRA--------LPPALAALRCLEVLQASDN-- 53

Query: 157 QGRIPKSLANCAVLEIIDLGNNQIIDT-FPAWLGTLSELDILVLQSNNFHGE 207
                  +AN   L+ + L NN++  +     L +   L +L LQ N+   E
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 26/103 (25%)

Query: 302 LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKL---------------- 345
           L+       +   +  L  +  L L++N L    P+    L  L                
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGV 61

Query: 346 ------ESLDLSNNWF-SGQIPQQLTGLTFLEFFNVSHNNLTG 381
                 + L L NN        Q L     L   N+  N+L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 117 ILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLG 176
           +L L+  +L+      L            +  +D+SHN L+   P +LA    LE++   
Sbjct: 2   VLHLAHKDLTV--LCHLEQLL-------LVTHLDLSHNRLRALPP-ALAALRCLEVLQAS 51

Query: 177 NNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG 232
           +N + +          +  +L    NN   +    +     P+L +++L  NS   
Sbjct: 52  DNALENVDGVANLPRLQELLL---CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 314 SIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFN 373
              N    + L L    +   I +    L + +++D S+N            L  L+   
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLL 69

Query: 374 VSHNNLTGPIPEANQFPTF 392
           V++N +       +Q    
Sbjct: 70  VNNNRICRIGEGLDQALPD 88

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 303 SSNGFHGEIPTSIANLKGLQVLSLANNNLEGH--IPSCFGDLTKLESLDLSNNWFSGQIP 360
             +     +     N+  L  L+L+NN L     + S       L+ L+LS N    +  
Sbjct: 49  RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 361 QQLTGLTFLEFFNVSHNNLTGPIPEANQF 389
                   LE   +  N+L+    + + +
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 35/206 (16%), Positives = 52/206 (25%), Gaps = 22/206 (10%)

Query: 165 ANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVD 224
              A      LG   + DT       L ++  L          IK          L  ++
Sbjct: 15  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQIN 68

Query: 225 LSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNK 284
            SNN  T   P K       +   N            +  +                +  
Sbjct: 69  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 285 GQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTK 344
                      I     LS      ++  S   +  L                   +LT 
Sbjct: 129 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL---------------KPLANLTT 173

Query: 345 LESLDLSNNWFSG-QIPQQLTGLTFL 369
           LE LD+S+N  S   +  +LT L  L
Sbjct: 174 LERLDISSNKVSDISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	485
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.94

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2e-32  Score=258.04  Aligned_cols=259  Identities=33%  Similarity=0.509  Sum_probs=227.8

Q ss_pred             CCCcEEEccCCcccc--cCChhhcCCCCCCEEEccc-CcccccCCCccccCcccccCCCCccEEEccCCcccccCCcccc
Q 039564           89 TKTRHYLVSKNNLTG--EIPSWICNLSSLYILDLSD-NNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLA  165 (485)
Q Consensus        89 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  165 (485)
                      ..+++|++++|.+.+  .+|..++++++|++|+|++ |.++|.+|..++++       ++|++|+|++|++.+..+..+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L-------~~L~~L~Ls~N~l~~~~~~~~~  122 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-------TQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-------TTCSEEEEEEECCEEECCGGGG
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc-------cccchhhhcccccccccccccc
Confidence            357788888888876  4789999999999999997 88999999777664       8999999999999999999999


Q ss_pred             CCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCc-cEEEccCccCCccCChhhhccccc
Q 039564          166 NCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKL-RIVDLSNNSFTGNLPSKYFQCWNA  244 (485)
Q Consensus       166 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~  244 (485)
                      .+.+|+++++++|.+.+..|..+..+++++++++++|.+.+.+|..+  ..+..+ +.+++++|++++..+..+ ..+  
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~~-~~l--  197 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-ANL--  197 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GGC--
T ss_pred             chhhhcccccccccccccCchhhccCcccceeecccccccccccccc--ccccccccccccccccccccccccc-ccc--
Confidence            99999999999999999999999999999999999999999998877  556665 889999999987666432 111  


Q ss_pred             ceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEE
Q 039564          245 MKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVL  324 (485)
Q Consensus       245 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  324 (485)
                                                                         ....++++++...+.+|..+..+++++.+
T Consensus       198 ---------------------------------------------------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l  226 (313)
T d1ogqa_         198 ---------------------------------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             ---------------------------------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             ---------------------------------------------------ccccccccccccccccccccccccccccc
Confidence                                                               14568889999998999999999999999


Q ss_pred             eCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 039564          325 SLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPEANQFPTFDSSSFDGNSGLC  404 (485)
Q Consensus       325 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~lc  404 (485)
                      ++++|.+.+.+| .+..+++|+.|++++|++++.+|+.|+++++|++|+|++|+++|.+|....+..++.+.+.||+.+|
T Consensus       227 ~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             ECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             cccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcccc
Confidence            999999997655 6888999999999999999999999999999999999999999999987788889999999999999


Q ss_pred             CCCCCCCC
Q 039564          405 GKPLFKEC  412 (485)
Q Consensus       405 ~~~~~~~c  412 (485)
                      |.|+. .|
T Consensus       306 g~plp-~c  312 (313)
T d1ogqa_         306 GSPLP-AC  312 (313)
T ss_dssp             STTSS-CC
T ss_pred             CCCCC-CC
Confidence            98874 44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=4.9e-29  Score=234.64  Aligned_cols=246  Identities=29%  Similarity=0.406  Sum_probs=194.7

Q ss_pred             cEEEcCCCccccc--CCCC---CCCCcEEEccC-CcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCC
Q 039564           71 FTLDLSSNFLQGP--IPAP---PTKTRHYLVSK-NNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGS  144 (485)
Q Consensus        71 ~~L~l~~n~l~~~--~~~~---~~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~  144 (485)
                      +.|+|++|.+++.  +|..   ++.|++|++++ |.+.|.+|..|+++++|++|+|++|++.+..|..+.       .+.
T Consensus        53 ~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~-------~~~  125 (313)
T d1ogqa_          53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-------QIK  125 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-------GCT
T ss_pred             EEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccccc-------chh
Confidence            6677777766653  3333   77788888875 678888888888999999999999988866664443       457


Q ss_pred             CccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCC-CEEEeeccccccccCCccccCCCCCccEE
Q 039564          145 NLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSEL-DILVLQSNNFHGEIKEHKMECGFPKLRIV  223 (485)
Q Consensus       145 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  223 (485)
                      .|+.+++++|.+.+.+|..+..++.++++++++|.+.+.+|..+..+.++ +.+++++|++.+..+..+  ..+ ....+
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~--~~l-~~~~l  202 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANL-NLAFV  202 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGC-CCSEE
T ss_pred             hhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc--ccc-ccccc
Confidence            88999999998888888888899999999999998888888888888776 788888898888777766  344 34578


Q ss_pred             EccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcC
Q 039564          224 DLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILS  303 (485)
Q Consensus       224 ~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls  303 (485)
                      +++.+...+.+|.. +..                                                    ...++.++++
T Consensus       203 ~l~~~~~~~~~~~~-~~~----------------------------------------------------~~~l~~l~~~  229 (313)
T d1ogqa_         203 DLSRNMLEGDASVL-FGS----------------------------------------------------DKNTQKIHLA  229 (313)
T ss_dssp             ECCSSEEEECCGGG-CCT----------------------------------------------------TSCCSEEECC
T ss_pred             cccccccccccccc-ccc----------------------------------------------------cccccccccc
Confidence            88888777655532 111                                                    3347888888


Q ss_pred             CCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          304 SNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       304 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      +|.+.+.+| .+..+++|+.|+|++|+++|.+|..++.+++|++|+|++|+++|.+|. +.++++|+.+++++|+..+
T Consensus       230 ~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             SSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             ccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            888886554 578889999999999999999999999999999999999999998885 5788899999999998543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.8e-26  Score=223.45  Aligned_cols=309  Identities=21%  Similarity=0.240  Sum_probs=216.1

Q ss_pred             hCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCC
Q 039564           13 KQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKT   91 (485)
Q Consensus        13 ~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L   91 (485)
                      ..+.+|++|+++++.|+ .+. .+.  .+++|++|++++|+|+++.+   +.++..+ ++|++++|.+.+..+-. +++|
T Consensus        41 ~~l~~l~~L~l~~~~I~-~l~-gl~--~L~nL~~L~Ls~N~l~~l~~---l~~L~~L-~~L~L~~n~i~~i~~l~~l~~L  112 (384)
T d2omza2          41 TDLDQVTTLQADRLGIK-SID-GVE--YLNNLTQINFSNNQLTDITP---LKNLTKL-VDILMNNNQIADITPLANLTNL  112 (384)
T ss_dssp             HHHTTCCEEECCSSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGG---GTTCTTC-CEEECCSSCCCCCGGGTTCTTC
T ss_pred             HHhCCCCEEECCCCCCC-Ccc-ccc--cCCCCCEEeCcCCcCCCCcc---ccCCccc-cccccccccccccccccccccc
Confidence            45678999999999888 343 466  78899999999999887632   3444444 99999999988755433 8889


Q ss_pred             cEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCC-------------------cc---------------ccCc
Q 039564           92 RHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPR-------------------CL---------------GNFS  137 (485)
Q Consensus        92 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-------------------~l---------------~~l~  137 (485)
                      +.|+++++.+++..+  ......+..+....|.+....+.                   .+               ....
T Consensus       113 ~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (384)
T d2omza2         113 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI  190 (384)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            999999888874332  23344555555555443211000                   00               0000


Q ss_pred             ccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCC
Q 039564          138 DTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGF  217 (485)
Q Consensus       138 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  217 (485)
                      ..+..+++++.+++++|.+++..|  +...++|++|++++|.++..  +.+..+++|+.|++++|.+.+..+  +  ..+
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~--~~~  262 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L--SGL  262 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G--TTC
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--c--ccc
Confidence            345667899999999999986544  45678999999999998664  457889999999999999885433  3  568


Q ss_pred             CCccEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccc
Q 039564          218 PKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYIL  297 (485)
Q Consensus       218 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L  297 (485)
                      ++|+.|+++++.+.+ ++.  +..+..++.+....+....                              ......+..+
T Consensus       263 ~~L~~L~l~~~~l~~-~~~--~~~~~~l~~l~~~~n~l~~------------------------------~~~~~~~~~l  309 (384)
T d2omza2         263 TKLTELKLGANQISN-ISP--LAGLTALTNLELNENQLED------------------------------ISPISNLKNL  309 (384)
T ss_dssp             TTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCSC------------------------------CGGGGGCTTC
T ss_pred             ccCCEeeccCcccCC-CCc--ccccccccccccccccccc------------------------------ccccchhccc
Confidence            999999999999874 332  3444444444333211100                              0111235568


Q ss_pred             cEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCC
Q 039564          298 TAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       298 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      +.|++++|++++..  .+..+++|++|++++|++++ ++ .++.+++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       310 ~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         310 TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            88999999888543  37788899999999998873 44 58888999999999999886544  788889999999887


Q ss_pred             c
Q 039564          378 N  378 (485)
Q Consensus       378 ~  378 (485)
                      .
T Consensus       384 a  384 (384)
T d2omza2         384 A  384 (384)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=7.9e-26  Score=211.71  Aligned_cols=189  Identities=23%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             CCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccc
Q 039564            3 CNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQG   82 (485)
Q Consensus         3 n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~   82 (485)
                      ++|+++|..+.  +++++|+|++|+|+...+.+|.  .+++|++|++++|.++.+.+.  .+.....|++|++++|+++.
T Consensus        20 ~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~--~f~~l~~L~~L~l~~n~l~~   93 (305)
T d1xkua_          20 LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPG--AFAPLVKLERLYLSKNQLKE   93 (305)
T ss_dssp             SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCSB
T ss_pred             CCCCccCCCCC--CCCCEEECcCCcCCCcChhHhh--ccccccccccccccccccchh--hhhCCCccCEecccCCccCc
Confidence            45677777664  6788888888888743334666  678888888888888776554  34444444888888887776


Q ss_pred             cCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCc
Q 039564           83 PIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPK  162 (485)
Q Consensus        83 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~  162 (485)
                      ........++.|.+.+|.+.+..+..+.....++.++...|..... ..    ....|..+++|+.+++++|.++ .+|.
T Consensus        94 l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~-~~----~~~~~~~l~~L~~l~l~~n~l~-~l~~  167 (305)
T d1xkua_          94 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GI----ENGAFQGMKKLSYIRIADTNIT-TIPQ  167 (305)
T ss_dssp             CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-GB----CTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred             Cccchhhhhhhhhccccchhhhhhhhhhcccccccccccccccccc-CC----CccccccccccCccccccCCcc-ccCc
Confidence            5555566777777777777755555566666666666666543311 00    0022333455555555555554 2332


Q ss_pred             cccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564          163 SLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       163 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  205 (485)
                      .+  .++|++|++++|......+..|..++.+++|++++|.+.
T Consensus       168 ~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         168 GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             cc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence            21  344445555544444444444444444444444444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.2e-25  Score=208.73  Aligned_cols=83  Identities=23%  Similarity=0.357  Sum_probs=41.3

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                      ++.|++++|...+..+..+.+++.++.|++++|.+++..+..+.++++|++|+|++|.|+ .+|++|..+++|++|++++
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCC
Confidence            444444444444444444445555555555555555444444555555555555555554 3344445555555555555


Q ss_pred             Cccc
Q 039564          377 NNLT  380 (485)
Q Consensus       377 N~l~  380 (485)
                      |+++
T Consensus       252 N~i~  255 (305)
T d1xkua_         252 NNIS  255 (305)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            5544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=3.1e-25  Score=214.64  Aligned_cols=322  Identities=24%  Similarity=0.273  Sum_probs=230.1

Q ss_pred             EECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCcEEEccCC
Q 039564           21 LDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKN   99 (485)
Q Consensus        21 L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n   99 (485)
                      ..++.+.+++.+..  .  .+.+|++|+++++.|+.+.   ++..+.. |++|++++|+|++..+-. +++|++|++++|
T Consensus        27 ~~l~~~~~~~~~~~--~--~l~~l~~L~l~~~~I~~l~---gl~~L~n-L~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n   98 (384)
T d2omza2          27 TVLGKTNVTDTVSQ--T--DLDQVTTLQADRLGIKSID---GVEYLNN-LTQINFSNNQLTDITPLKNLTKLVDILMNNN   98 (384)
T ss_dssp             HHTTCSSTTSEECH--H--HHTTCCEEECCSSCCCCCT---TGGGCTT-CCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             HHhCCCCCCCccCH--H--HhCCCCEEECCCCCCCCcc---ccccCCC-CCEEeCcCCcCCCCccccCCccccccccccc
Confidence            35666667655443  2  5789999999999998752   3444444 599999999999865433 899999999999


Q ss_pred             cccccCChhhcCCCCCCEEEcccCcccccCCCccccC-c---------------------------------ccccCCCC
Q 039564          100 NLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNF-S---------------------------------DTFMNGSN  145 (485)
Q Consensus       100 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~---------------------------------~~~~~l~~  145 (485)
                      .+.+. + .++++++|+.|+++++.+++..+...... .                                 ..+.....
T Consensus        99 ~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (384)
T d2omza2          99 QIADI-T-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT  176 (384)
T ss_dssp             CCCCC-G-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTT
T ss_pred             ccccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence            99854 3 38899999999999998874322111000 0                                 11111122


Q ss_pred             ccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEc
Q 039564          146 LGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDL  225 (485)
Q Consensus       146 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l  225 (485)
                      ........|..  .....+..+++++.+++++|.+++..|  +...++|++|++++|.+.. ++ .+  ..+++|+.+++
T Consensus       177 ~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l--~~l~~L~~L~l  248 (384)
T d2omza2         177 LERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TL--ASLTNLTDLDL  248 (384)
T ss_dssp             CCEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GG--GGCTTCSEEEC
T ss_pred             ccccccccccc--ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hh--hcccccchhcc
Confidence            22222222222  233456778899999999999987755  4678999999999999874 33 33  57899999999


Q ss_pred             cCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCC
Q 039564          226 SNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSN  305 (485)
Q Consensus       226 ~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n  305 (485)
                      ++|.+++..+   +..++.|+.++++.......                              ........++.++++.|
T Consensus       249 ~~n~l~~~~~---~~~~~~L~~L~l~~~~l~~~------------------------------~~~~~~~~l~~l~~~~n  295 (384)
T d2omza2         249 ANNQISNLAP---LSGLTKLTELKLGANQISNI------------------------------SPLAGLTALTNLELNEN  295 (384)
T ss_dssp             CSSCCCCCGG---GTTCTTCSEEECCSSCCCCC------------------------------GGGTTCTTCSEEECCSS
T ss_pred             ccCccCCCCc---ccccccCCEeeccCcccCCC------------------------------Ccccccccccccccccc
Confidence            9999984333   56677777776654321110                              00112455889999999


Q ss_pred             cCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCC
Q 039564          306 GFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE  385 (485)
Q Consensus       306 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  385 (485)
                      .+.+  ...+..+++++.|++++|++++..  .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++..| 
T Consensus       296 ~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         296 QLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             CCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             cccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-
Confidence            9874  335788999999999999999653  37899999999999999984 44 58999999999999999997655 


Q ss_pred             CCCCCCCCCCCCCCC
Q 039564          386 ANQFPTFDSSSFDGN  400 (485)
Q Consensus       386 ~~~~~~l~~~~~~~n  400 (485)
                      -..++.++.+.+++|
T Consensus       369 l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GTTCTTCSEEECCCE
T ss_pred             hccCCCCCEeeCCCC
Confidence            345566666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.9e-25  Score=203.96  Aligned_cols=219  Identities=22%  Similarity=0.228  Sum_probs=150.1

Q ss_pred             CCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcC-CCcc
Q 039564            2 SCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLS-SNFL   80 (485)
Q Consensus         2 ~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~-~n~l   80 (485)
                      ++++.++|..+.  +.+++|+|++|+|+...+.+|.  ++++|++|++++|.+..+.+.  .+.....++.++.. .+.+
T Consensus        20 ~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~--~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          20 QQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             SSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSCTTC
T ss_pred             CCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhh--ccccccccccccccccccccc--ccccccccccccccccccc
Confidence            456777777664  5678888888888755445677  788888888888888776554  44444444666654 4455


Q ss_pred             cccCCCC---CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccc
Q 039564           81 QGPIPAP---PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQ  157 (485)
Q Consensus        81 ~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~  157 (485)
                      +...+..   +++|++|++++|.+....+..+...++|+.+++++|.++ .+|.      ..|..+++|+.|++++|.++
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~------~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD------DTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT------TTTTTCTTCCEEECCSSCCC
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccCh------hHhccccchhhcccccCccc
Confidence            5444433   567777777777776555666677777777777777776 4433      23444567777777777777


Q ss_pred             ccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCC
Q 039564          158 GRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLP  235 (485)
Q Consensus       158 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  235 (485)
                      +..+..|.++++|+++++++|++++..|..|..+++|++|++++|.+.+..+..+  ..+++|++|++++|++.+..+
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~--~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCEECSGG
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc--ccccccCEEEecCCCCCCCcc
Confidence            6667777777777777777777777777777777777777777777775555555  567777777777777765433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.1e-24  Score=196.04  Aligned_cols=87  Identities=25%  Similarity=0.303  Sum_probs=68.5

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                      ++.|++++|.+.+..+..|.++++|+.+++++|++++..|..|..+++|+.|++++|++.+..+..|..+++|+.|++++
T Consensus       155 L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            55566666666655666777888888888888888888888888888888888888888877778888888888888888


Q ss_pred             CcccccC
Q 039564          377 NNLTGPI  383 (485)
Q Consensus       377 N~l~~~~  383 (485)
                      |++.+..
T Consensus       235 N~l~C~C  241 (284)
T d1ozna_         235 NPWVCDC  241 (284)
T ss_dssp             SCEECSG
T ss_pred             CCCCCCc
Confidence            8887643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-23  Score=191.93  Aligned_cols=202  Identities=26%  Similarity=0.297  Sum_probs=144.9

Q ss_pred             CCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhC
Q 039564          111 NLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGT  190 (485)
Q Consensus       111 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  190 (485)
                      +...+.+++.+++.++ .+|+.+.         +++++|+|++|.|++..+.+|.++++|++|+|++|.++...  .++.
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp---------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~   75 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP---------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGT   75 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC---------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSC
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC---------cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccc
Confidence            4455666778887777 6775442         46788888888888666677888888888888888876432  2467


Q ss_pred             CCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhhhhccccccccccccc
Q 039564          191 LSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYG  270 (485)
Q Consensus       191 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~  270 (485)
                      +++|++|++++|++.. .+..+  ..+++|+.|++++|.+. .++...+..                             
T Consensus        76 l~~L~~L~Ls~N~l~~-~~~~~--~~l~~L~~L~l~~~~~~-~~~~~~~~~-----------------------------  122 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQS-LPLLG--QTLPALTVLDVSFNRLT-SLPLGALRG-----------------------------  122 (266)
T ss_dssp             CTTCCEEECCSSCCSS-CCCCT--TTCTTCCEEECCSSCCC-CCCSSTTTT-----------------------------
T ss_pred             cccccccccccccccc-ccccc--ccccccccccccccccc-eeecccccc-----------------------------
Confidence            7888888888888763 34444  56788888888888776 333222211                             


Q ss_pred             CcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEEC
Q 039564          271 YFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDL  350 (485)
Q Consensus       271 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  350 (485)
                                             +..++.|++++|.+....+..+..+++++.|++++|++++..+..|..+++|++|+|
T Consensus       123 -----------------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         123 -----------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             -----------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             -----------------------ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeec
Confidence                                   233677777777777666666777888888888888888777777888888888888


Q ss_pred             CCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          351 SNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       351 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      ++|+|+ .+|+.+..+++|+.|+|++|++.+
T Consensus       180 s~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            888888 677777777888888887777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-23  Score=192.00  Aligned_cols=205  Identities=25%  Similarity=0.258  Sum_probs=174.6

Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCcc
Q 039564          142 NGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLR  221 (485)
Q Consensus       142 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  221 (485)
                      ....+.+.+.+++.++ .+|..+.  +++++|+|++|.+++..+.+|..+++|++|++++|.++ .++. +  ..+++|+
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~--~~l~~L~   80 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-D--GTLPVLG   80 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-C--SCCTTCC
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-c--ccccccc
Confidence            3466777899999999 6787664  57999999999998888889999999999999999997 4543 3  5789999


Q ss_pred             EEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEE
Q 039564          222 IVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVI  301 (485)
Q Consensus       222 ~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~  301 (485)
                      +|++++|++.+ .+.. +..                                                    ++.|+.|+
T Consensus        81 ~L~Ls~N~l~~-~~~~-~~~----------------------------------------------------l~~L~~L~  106 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLL-GQT----------------------------------------------------LPALTVLD  106 (266)
T ss_dssp             EEECCSSCCSS-CCCC-TTT----------------------------------------------------CTTCCEEE
T ss_pred             ccccccccccc-cccc-ccc----------------------------------------------------cccccccc
Confidence            99999999873 3322 111                                                    34489999


Q ss_pred             cCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccc
Q 039564          302 LSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       302 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      +++|.+.+..+..+..+.++++|++++|.+++..+..+..++.|+.+++++|++++..+..|..+++|++|+|++|+|+ 
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            9999998778888899999999999999999888888899999999999999999888888999999999999999999 


Q ss_pred             cCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 039564          382 PIPEA-NQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       382 ~~p~~-~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      .+|.+ .....+..+.+.||||.|+|.+
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            56654 5667788899999999999865

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=5e-19  Score=168.22  Aligned_cols=304  Identities=25%  Similarity=0.280  Sum_probs=182.5

Q ss_pred             CCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCCCCCCcEEE
Q 039564           16 KHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAPPTKTRHYL   95 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~~~~L~~L~   95 (485)
                      .++++|||+++.++ .+|+.     .++|++|++++|+|+.+ |.  .   ...|++|++++|.++. ++..++.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~-----~~~L~~L~Ls~N~l~~l-p~--~---~~~L~~L~l~~n~l~~-l~~lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL-----PPHLESLVASCNSLTEL-PE--L---PQSLKSLLVDNNNLKA-LSDLPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC-----CTTCSEEECCSSCCSSC-CC--C---CTTCCEEECCSSCCSC-CCSCCTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC-----CCCCCEEECCCCCCccc-cc--c---hhhhhhhhhhhcccch-hhhhcccccccc
Confidence            47999999999998 68853     46899999999999965 32  2   2345999999999884 345567899999


Q ss_pred             ccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEc
Q 039564           96 VSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDL  175 (485)
Q Consensus        96 l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  175 (485)
                      +++|.+. .+|. ++.+++|+.|+++++.+. ..|..          ...+..+.+..+...  ....+..++.++.+++
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~~----------~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDL----------PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYA  169 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCCC----------CTTCCEEECCSSCCS--SCCCCTTCTTCCEEEC
T ss_pred             ccccccc-cccc-hhhhccceeecccccccc-ccccc----------cccccchhhcccccc--ccccccccccceeccc
Confidence            9999998 4664 678999999999999887 44432          245666666665554  2344566777777777


Q ss_pred             cCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccchhh
Q 039564          176 GNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRY  255 (485)
Q Consensus       176 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~  255 (485)
                      ++|.......    .....+.+...++.+. .++..   ..++.|+.+++++|... .++..    ...+....+.....
T Consensus       170 ~~n~~~~~~~----~~~~~~~l~~~~~~~~-~~~~~---~~l~~L~~l~l~~n~~~-~~~~~----~~~l~~~~~~~~~~  236 (353)
T d1jl5a_         170 DNNSLKKLPD----LPLSLESIVAGNNILE-ELPEL---QNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYL  236 (353)
T ss_dssp             CSSCCSSCCC----CCTTCCEEECCSSCCS-SCCCC---TTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCC
T ss_pred             cccccccccc----cccccccccccccccc-ccccc---ccccccccccccccccc-ccccc----cccccccccccccc
Confidence            7776543221    1223344444444433 23222   34566666666666554 22211    11111111111100


Q ss_pred             hhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecccC
Q 039564          256 MRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHI  335 (485)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  335 (485)
                      ..           ....+..+.......+.. .............++..+.+.+.    ...+++|++|+|++|+++ .+
T Consensus       237 ~~-----------~~~~~~~l~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~l  299 (353)
T d1jl5a_         237 TD-----------LPELPQSLTFLDVSENIF-SGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-EL  299 (353)
T ss_dssp             SC-----------CCCCCTTCCEEECCSSCC-SEESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CC
T ss_pred             cc-----------cccccccccccccccccc-cccccccchhcccccccCccccc----cccCCCCCEEECCCCccC-cc
Confidence            00           000011111111111110 01112233455666666665522    234578888999988887 56


Q ss_pred             CccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccCCcccccCCC
Q 039564          336 PSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSHNNLTGPIPE  385 (485)
Q Consensus       336 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  385 (485)
                      |..   +++|+.|++++|+|+ .+|..   +++|++|++++|+++ .+|.
T Consensus       300 p~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         300 PAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             ccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            643   578888899988888 56643   457888899998887 4453

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=4.1e-17  Score=154.73  Aligned_cols=287  Identities=24%  Similarity=0.284  Sum_probs=186.9

Q ss_pred             CCCCCCCCChhhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcc
Q 039564            1 RSCNLFEFPNFLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFL   80 (485)
Q Consensus         1 ~~n~l~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l   80 (485)
                      ++|+|+++|+.   .++|++|+|++|+|+ .+|+.     +.+|+.|++++|.++.+..      +.+.|++|++++|.+
T Consensus        46 s~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~~-----~~~L~~L~l~~n~l~~l~~------lp~~L~~L~L~~n~l  110 (353)
T d1jl5a_          46 NNLGLSSLPEL---PPHLESLVASCNSLT-ELPEL-----PQSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQL  110 (353)
T ss_dssp             TTSCCSCCCSC---CTTCSEEECCSSCCS-SCCCC-----CTTCCEEECCSSCCSCCCS------CCTTCCEEECCSSCC
T ss_pred             CCCCCCCCCCC---CCCCCEEECCCCCCc-ccccc-----hhhhhhhhhhhcccchhhh------hcccccccccccccc
Confidence            46889999974   478999999999999 77864     3589999999999986532      335569999999999


Q ss_pred             cccCCCC-CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccc-
Q 039564           81 QGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQG-  158 (485)
Q Consensus        81 ~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~-  158 (485)
                      +...... ++.|++|+++++.+... +..   ...+..+.+..+....  +.       .+..++.++.+++++|.+.. 
T Consensus       111 ~~lp~~~~l~~L~~L~l~~~~~~~~-~~~---~~~l~~l~~~~~~~~~--~~-------~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         111 EKLPELQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE--LP-------ELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS--CC-------CCTTCTTCCEEECCSSCCSSC
T ss_pred             ccccchhhhccceeecccccccccc-ccc---cccccchhhccccccc--cc-------cccccccceeccccccccccc
Confidence            8654333 89999999999988732 222   2344455554443321  11       12223444444444444321 


Q ss_pred             ------------------cCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCc
Q 039564          159 ------------------RIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKL  220 (485)
Q Consensus       159 ------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  220 (485)
                                        .+ ..+..++.|+.+++++|.... .+   ....++..+.+.++.+.. .+.     ..+.+
T Consensus       178 ~~~~~~~~~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~-~~~-----~~~~l  246 (353)
T d1jl5a_         178 PDLPLSLESIVAGNNILEEL-PELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTD-LPE-----LPQSL  246 (353)
T ss_dssp             CCCCTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSC-CCC-----CCTTC
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccc-cc---cccccccccccccccccc-ccc-----ccccc
Confidence                              22 235678899999999998754 33   245778899999888763 222     23566


Q ss_pred             cEEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEE
Q 039564          221 RIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAV  300 (485)
Q Consensus       221 ~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L  300 (485)
                      ...++..+.+.+ +... .   ......+...                               + ........+++|++|
T Consensus       247 ~~~~~~~~~~~~-l~~l-~---~~~~~~~~~~-------------------------------~-~~~~~~~~~~~L~~L  289 (353)
T d1jl5a_         247 TFLDVSENIFSG-LSEL-P---PNLYYLNASS-------------------------------N-EIRSLCDLPPSLEEL  289 (353)
T ss_dssp             CEEECCSSCCSE-ESCC-C---TTCCEEECCS-------------------------------S-CCSEECCCCTTCCEE
T ss_pred             cccccccccccc-cccc-c---chhccccccc-------------------------------C-ccccccccCCCCCEE
Confidence            777777666552 1110 0   0000000000                               0 000112235679999


Q ss_pred             EcCCCcCcccCchhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564          301 ILSSNGFHGEIPTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS  375 (485)
Q Consensus       301 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  375 (485)
                      ++++|++. .+|.   .+++|+.|+|++|+++ .+|..   +++|++|++++|+++ .+|+..   .+|+.|.+.
T Consensus       290 ~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         290 NVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             ECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred             ECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeECc
Confidence            99999998 6665   3678999999999998 66653   468999999999998 677643   356777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.6e-19  Score=157.49  Aligned_cols=105  Identities=16%  Similarity=0.115  Sum_probs=58.2

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIID  150 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~  150 (485)
                      +++++++..++..++..+.++++|++++|.++...+.+|.++++|++|++++|.+...+|.      ..|..++.++++.
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~------~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA------DVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECS------SSEESCTTCCEEE
T ss_pred             CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeec------ccccccccccccc
Confidence            4556665555533222244566666666666644444566677777777777766544432      2344455666665


Q ss_pred             ccC-CcccccCCccccCCCCCcEEEccCCccc
Q 039564          151 MSH-NLLQGRIPKSLANCAVLEIIDLGNNQII  181 (485)
Q Consensus       151 Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  181 (485)
                      +.. |.+....+..|.++++|+++++++|.+.
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccccchhhhc
Confidence            543 4455445555555566666666655553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=156.18  Aligned_cols=221  Identities=20%  Similarity=0.212  Sum_probs=131.5

Q ss_pred             cEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccC-CccccCCCCC
Q 039564           92 RHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRI-PKSLANCAVL  170 (485)
Q Consensus        92 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L  170 (485)
                      +.++.++.+++ .+|..+  .+++++|++++|.++ .+|.      ..|.++++|++|++++|.+...+ +..|.+++.+
T Consensus        11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~-~l~~------~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l   80 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQK------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   80 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCC-EECT------TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred             CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCC-ccCh------hHhhccchhhhhhhccccccceeecccccccccc
Confidence            45566666666 455443  246677777777766 4443      33455567777777777665433 3356666677


Q ss_pred             cEEEccC-CcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceecc
Q 039564          171 EIIDLGN-NQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVN  249 (485)
Q Consensus       171 ~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~  249 (485)
                      +++.+.. |.+....+..|..+++|+++++++|.+.. .+.......+..+..+..+++.+. .++...|.         
T Consensus        81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~-~~~~~~~~~l~~l~~~~~~n~~l~-~i~~~~~~---------  149 (242)
T d1xwdc1          81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIH-TIERNSFV---------  149 (242)
T ss_dssp             CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS-CCCCTTTCBSSCEEEEEESCTTCC-EECTTSST---------
T ss_pred             ccccccccccccccccccccccccccccccchhhhcc-cccccccccccccccccccccccc-cccccccc---------
Confidence            7666543 45555555666667777777777766652 222111123344444444444444 22222111         


Q ss_pred             ccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEE-eCcC
Q 039564          250 ASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVL-SLAN  328 (485)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-~Ls~  328 (485)
                                                                .....++.+++++|+++...+. .....++..+ ++++
T Consensus       150 ------------------------------------------~~~~~l~~L~l~~n~l~~i~~~-~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         150 ------------------------------------------GLSFESVILWLNKNGIQEIHNC-AFNGTQLDELNLSDN  186 (242)
T ss_dssp             ------------------------------------------TSBSSCEEEECCSSCCCEECTT-TTTTCCEEEEECTTC
T ss_pred             ------------------------------------------cccccceeeecccccccccccc-cccchhhhccccccc
Confidence                                                      1123477888888888844443 3444555554 5677


Q ss_pred             ceecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564          329 NNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       329 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                      |+++...+..|.++++|++|++++|+++...+..|.+++.|+.+++.+
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            788855556788899999999999999855555677777777766644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=6.1e-18  Score=150.17  Aligned_cols=203  Identities=19%  Similarity=0.243  Sum_probs=132.1

Q ss_pred             EEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEE
Q 039564           94 YLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEII  173 (485)
Q Consensus        94 L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  173 (485)
                      ++++.+.+++..  .+..+.+|+.|++.+|.++ .++ .+       ..+++|++|++++|.+++..  .+..+++++++
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l-------~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l   90 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GV-------QYLNNLIGLELKDNQITDLA--PLKNLTKITEL   90 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TG-------GGCTTCCEEECCSSCCCCCG--GGTTCCSCCEE
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hH-------hcCCCCcEeecCCceeeccc--ccccccccccc
Confidence            344455554332  2345666777777777666 332 22       33467777777777776433  26677777777


Q ss_pred             EccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCChhhhcccccceeccccch
Q 039564          174 DLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPSKYFQCWNAMKFVNASQL  253 (485)
Q Consensus       174 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~  253 (485)
                      ++++|.++..  ..+..+++|+.+.++++...+..+  +  ...+.++.+.++++.+....+   +.             
T Consensus        91 ~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~~~---~~-------------  148 (227)
T d1h6ua2          91 ELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--L--AGLSNLQVLYLDLNQITNISP---LA-------------  148 (227)
T ss_dssp             ECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--G--TTCTTCCEEECCSSCCCCCGG---GG-------------
T ss_pred             cccccccccc--ccccccccccccccccccccccch--h--ccccchhhhhchhhhhchhhh---hc-------------
Confidence            7777766543  346677777777777776653221  2  345667777777666542111   11             


Q ss_pred             hhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCcCcccCchhhccCCCCCEEeCcCceecc
Q 039564          254 RYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPTSIANLKGLQVLSLANNNLEG  333 (485)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  333 (485)
                                                             .++.++.|++++|.+.+..  .+.++++|++|+|++|++++
T Consensus       149 ---------------------------------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         149 ---------------------------------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             ---------------------------------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ---------------------------------------cccccccccccccccccch--hhcccccceecccCCCccCC
Confidence                                                   1334778888888776332  37788999999999999884


Q ss_pred             cCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEeccC
Q 039564          334 HIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVSH  376 (485)
Q Consensus       334 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  376 (485)
                       ++ .+..+++|++|++++|++++ ++. ++++++|+.|++++
T Consensus       188 -l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 -IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence             43 37889999999999999985 443 78899999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.7e-17  Score=144.33  Aligned_cols=190  Identities=21%  Similarity=0.215  Sum_probs=152.3

Q ss_pred             hhhCCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCC-CCCC
Q 039564           11 FLKQQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIP-APPT   89 (485)
Q Consensus        11 ~~~~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~-~~~~   89 (485)
                      .++++.+|+.|++++|.|+ .++ .+.  .+++|++|++++|.+++..+   +..+..+ +++++++|.++.... ..++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~-~l~-~l~--~l~~L~~L~ls~n~i~~~~~---l~~l~~l-~~l~~~~n~~~~i~~l~~l~  107 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVT-TIE-GVQ--YLNNLIGLELKDNQITDLAP---LKNLTKI-TELELSGNPLKNVSAIAGLQ  107 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGG---GTTCCSC-CEEECCSCCCSCCGGGTTCT
T ss_pred             CHHHcCCcCEEECCCCCCC-cch-hHh--cCCCCcEeecCCceeecccc---ccccccc-cccccccccccccccccccc
Confidence            4567889999999999998 454 477  89999999999999987643   4445555 999999999885432 2389


Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564           90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV  169 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  169 (485)
                      +|+.++++++...+.  ..+...+.++.+.++.+.+....         .+..+++|+.|++++|.+++.  ..+.++++
T Consensus       108 ~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~  174 (227)
T d1h6ua2         108 SIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS---------PLAGLTNLQYLSIGNAQVSDL--TPLANLSK  174 (227)
T ss_dssp             TCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG---------GGGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             ccccccccccccccc--chhccccchhhhhchhhhhchhh---------hhccccccccccccccccccc--hhhccccc
Confidence            999999999988743  34677899999999999876332         234568999999999998743  34889999


Q ss_pred             CcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccC
Q 039564          170 LEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN  227 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~  227 (485)
                      |++|++++|++++..  .++.+++|++|++++|++++ ++. +  ..+++|+.|++++
T Consensus       175 L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~-i~~-l--~~l~~L~~L~lsn  226 (227)
T d1h6ua2         175 LTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISD-VSP-L--ANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCB-CGG-G--TTCTTCCEEEEEE
T ss_pred             ceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCC-Ccc-c--ccCCCCCEEEeeC
Confidence            999999999997643  38899999999999999984 443 4  6889999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=4.5e-18  Score=146.70  Aligned_cols=128  Identities=26%  Similarity=0.316  Sum_probs=80.5

Q ss_pred             cEEEcCCCcccccCCCCCCCCcEEEccCCcccc-cCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564           71 FTLDLSSNFLQGPIPAPPTKTRHYLVSKNNLTG-EIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII  149 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L  149 (485)
                      +++++++++++..+...++++++|+|++|.|++ ..+..|.++++|+.|++++|.+....+       ..|..+++|++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-------~~~~~~~~L~~L   83 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-------NAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-------TTTTTCTTCCEE
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-------ccccccccccee
Confidence            456666666654333335566666666666654 234556677777777777777764433       234445667777


Q ss_pred             EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccc
Q 039564          150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  205 (485)
                      ++++|+++...+.+|.++++|++|+|++|+++.+.+++|..+++|++|+|++|.+.
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            77777777666666677777777777777776666666666666666666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=8.4e-18  Score=144.99  Aligned_cols=42  Identities=33%  Similarity=0.544  Sum_probs=20.6

Q ss_pred             hccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCc
Q 039564          315 IANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFS  356 (485)
Q Consensus       315 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  356 (485)
                      |.++++|++|+|++|+|++..+.+|..+++|++|+|++|.+.
T Consensus        98 F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            344444555555555554444444445555555555555444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7e-20  Score=180.59  Aligned_cols=67  Identities=22%  Similarity=0.210  Sum_probs=42.3

Q ss_pred             cCCCCCcEEEccCCcccCC-----cChhhhCCCCCCEEEeeccccccccCCcc--ccCCCCCccEEEccCccCC
Q 039564          165 ANCAVLEIIDLGNNQIIDT-----FPAWLGTLSELDILVLQSNNFHGEIKEHK--MECGFPKLRIVDLSNNSFT  231 (485)
Q Consensus       165 ~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~  231 (485)
                      ...+.++.+++++|.+...     ..........++.+++++|.+........  .....+.++.+++++|.+.
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  296 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             cccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3456788888888876432     22233456788889998887763321111  0034677888888888775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.9e-17  Score=142.80  Aligned_cols=180  Identities=17%  Similarity=0.270  Sum_probs=112.1

Q ss_pred             EECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCcEEEccCC
Q 039564           21 LDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKN   99 (485)
Q Consensus        21 L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n   99 (485)
                      .++..+.+.+.++.  .  .+.+|++|++++|.++...   ++..+ ..|++|++++|++++..+.. +++|++|++++|
T Consensus        29 ~~l~~~~~~~~~~~--~--~L~~L~~L~l~~~~i~~l~---~l~~l-~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--N--ELNSIDQIIANNSDIKSVQ---GIQYL-PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN  100 (210)
T ss_dssp             HHTTCSCTTSEECH--H--HHHTCCEEECTTSCCCCCT---TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             HHhCcCccCCccCH--H--HhcCccEEECcCCCCCCch---hHhhC-CCCCEEeCCCccccCccccccCccccccccccc
Confidence            34555555544332  1  3556777777777776542   23333 33377777777766544333 667777777777


Q ss_pred             cccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCc
Q 039564          100 NLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQ  179 (485)
Q Consensus       100 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  179 (485)
                      ++++ +| .++++++|+.|++++|.+. .++        .+..++.++.+++++|.+++  +..+..+++|+++++++|.
T Consensus       101 ~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~--------~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~  167 (210)
T d1h6ta2         101 KVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN--------GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ  167 (210)
T ss_dssp             CCCC-GG-GGTTCTTCCEEECTTSCCC-CCG--------GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSC
T ss_pred             cccc-cc-ccccccccccccccccccc-ccc--------cccccccccccccccccccc--ccccccccccccccccccc
Confidence            7763 34 4677777777777777665 222        23345777777777777763  2345667777777777777


Q ss_pred             ccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccC
Q 039564          180 IIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSN  227 (485)
Q Consensus       180 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~  227 (485)
                      +++..  .+..+++|++|++++|.++ .++ .+  ..+++|++|++++
T Consensus       168 l~~i~--~l~~l~~L~~L~Ls~N~i~-~l~-~l--~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         168 ISDIV--PLAGLTKLQNLYLSKNHIS-DLR-AL--AGLKNLDVLELFS  209 (210)
T ss_dssp             CCCCG--GGTTCTTCCEEECCSSCCC-BCG-GG--TTCTTCSEEEEEE
T ss_pred             ccccc--cccCCCCCCEEECCCCCCC-CCh-hh--cCCCCCCEEEccC
Confidence            76543  2667777777777777776 344 23  5677777777753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=7.6e-17  Score=140.95  Aligned_cols=165  Identities=20%  Similarity=0.232  Sum_probs=134.2

Q ss_pred             CCCCCCEEECCCCcCCCCCCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCc
Q 039564           14 QQKHLKALDLSSNKLHGNIPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTR   92 (485)
Q Consensus        14 ~l~~L~~L~Ls~n~~~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~   92 (485)
                      .+.+|++|++++|.+.+ ++ .+.  .+++|++|++++|.++++.+   +..+.. |++|++++|++++...-. +++|+
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~--~l~~L~~L~L~~n~i~~l~~---~~~l~~-L~~L~l~~n~i~~l~~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQ--YLPNVTKLFLNGNKLTDIKP---LANLKN-LGWLFLDENKVKDLSSLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGG--GCTTCCEEECCSSCCCCCGG---GTTCTT-CCEEECCSSCCCCGGGGTTCTTCC
T ss_pred             HhcCccEEECcCCCCCC-ch-hHh--hCCCCCEEeCCCccccCccc---cccCcc-cccccccccccccccccccccccc
Confidence            46789999999999984 44 366  79999999999999998643   344444 499999999998754322 89999


Q ss_pred             EEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcE
Q 039564           93 HYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEI  172 (485)
Q Consensus        93 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  172 (485)
                      .|++++|.+.. + ..+.+++.++.+++++|.+++ .+ .       +..+++|+++++++|.+++. + .+.++++|++
T Consensus       116 ~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~-~~-~-------~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~  182 (210)
T d1h6ta2         116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-IT-V-------LSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQN  182 (210)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-CG-G-------GGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred             ccccccccccc-c-ccccccccccccccccccccc-cc-c-------cccccccccccccccccccc-c-cccCCCCCCE
Confidence            99999999873 3 468899999999999999873 22 2       33468999999999999853 3 4889999999


Q ss_pred             EEccCCcccCCcChhhhCCCCCCEEEeec
Q 039564          173 IDLGNNQIIDTFPAWLGTLSELDILVLQS  201 (485)
Q Consensus       173 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  201 (485)
                      |++++|.+++. + .+..+++|++|+|++
T Consensus       183 L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         183 LYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             EECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            99999999764 3 589999999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.2e-16  Score=136.79  Aligned_cols=161  Identities=24%  Similarity=0.317  Sum_probs=100.3

Q ss_pred             CCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC-CCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 039564           40 SMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYIL  118 (485)
Q Consensus        40 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  118 (485)
                      .++++++|++++|.++.+.   ++..+. .|++|++++|++++..+-. +++|++|++++|.+.. ++ .+++++.|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l~---~l~~l~-nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID---GVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT---TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCcc---ccccCC-CcCcCccccccccCcccccCCccccccccccccccc-cc-ccccccccccc
Confidence            3455666666666655431   122222 3366666666665543322 5666777777666652 33 36777888888


Q ss_pred             EcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEE
Q 039564          119 DLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILV  198 (485)
Q Consensus       119 ~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  198 (485)
                      ++++|.....         +.+..+++|+.|++++|.+.. + +.+..+++|++|++++|.+++..  .++++++|++|+
T Consensus       112 ~l~~~~~~~~---------~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~  178 (199)
T d2omxa2         112 TLFNNQITDI---------DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLD  178 (199)
T ss_dssp             ECCSSCCCCC---------GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             cccccccccc---------cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEE
Confidence            8877776522         223455778888888887762 2 35777788888888888776543  367788888888


Q ss_pred             eeccccccccCCccccCCCCCccEE
Q 039564          199 LQSNNFHGEIKEHKMECGFPKLRIV  223 (485)
Q Consensus       199 L~~n~l~~~~~~~~~~~~l~~L~~L  223 (485)
                      +++|++++ ++ .+  ..+++|+.|
T Consensus       179 ls~N~i~~-i~-~l--~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVSD-IS-VL--AKLTNLESL  199 (199)
T ss_dssp             CCSSCCCC-CG-GG--GGCTTCSEE
T ss_pred             CCCCCCCC-Cc-cc--cCCCCCCcC
Confidence            88887763 33 23  456777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.7e-16  Score=136.22  Aligned_cols=142  Identities=23%  Similarity=0.261  Sum_probs=61.7

Q ss_pred             cEEEcCCCcccccCCC-CCCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564           71 FTLDLSSNFLQGPIPA-PPTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII  149 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L  149 (485)
                      ++|++++|.++....- .+++|++|++++|.+++. +. ++++++|++|++++|.+. .++        .+..++.|+.|
T Consensus        43 ~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~--------~l~~l~~L~~L  111 (199)
T d2omxa2          43 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT--------PLANLTNLTGL  111 (199)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG--------GGTTCTTCSEE
T ss_pred             CEEECCCCCCCCccccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc--------ccccccccccc
Confidence            4555555544432111 144555555555554432 11 444555555555555443 221        12233445555


Q ss_pred             EccCCcccccCCccccCCCCCcEEEccCCcccCCcChhhhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCcc
Q 039564          150 DMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNS  229 (485)
Q Consensus       150 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  229 (485)
                      ++++|.+...  +.+..+++|+.|++++|.+...  +.+..+++|++|++.+|++.+ ++. +  ..+++|++|++++|+
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~-l~~-l--~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTD-LKP-L--ANLTTLERLDISSNK  183 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGG-G--TTCTTCCEEECCSSC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccC-Ccc-c--cCCCCCCEEECCCCC
Confidence            5554444321  2344445555555555544321  224444555555555554442 111 2  344455555555554


Q ss_pred             CC
Q 039564          230 FT  231 (485)
Q Consensus       230 l~  231 (485)
                      ++
T Consensus       184 i~  185 (199)
T d2omxa2         184 VS  185 (199)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.9e-16  Score=143.89  Aligned_cols=83  Identities=18%  Similarity=0.191  Sum_probs=48.8

Q ss_pred             ccccEEEcCCCc-CcccCchhhccCCCCCEEeCcCc-eecccCCccccCCCCCCEEECCCCcCcc-cCcccccCCCCCCE
Q 039564          295 YILTAVILSSNG-FHGEIPTSIANLKGLQVLSLANN-NLEGHIPSCFGDLTKLESLDLSNNWFSG-QIPQQLTGLTFLEF  371 (485)
Q Consensus       295 ~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~  371 (485)
                      +.|+.|++++|. +++.....+..+++|++|+|++| .+++.....++.+++|+.|+++++ ++. .++.....+|.|+ 
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~-  252 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ-  252 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE-
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc-
Confidence            346677776643 55555666677777777777774 565555556677777777777776 322 2222223345443 


Q ss_pred             EeccCCcccc
Q 039564          372 FNVSHNNLTG  381 (485)
Q Consensus       372 L~l~~N~l~~  381 (485)
                        +..++++.
T Consensus       253 --i~~~~ls~  260 (284)
T d2astb2         253 --INCSHFTT  260 (284)
T ss_dssp             --ESCCCSCC
T ss_pred             --ccCccCCC
Confidence              45555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.8e-18  Score=164.97  Aligned_cols=341  Identities=19%  Similarity=0.151  Sum_probs=204.2

Q ss_pred             CCCCEEECCCCcCCCCC-CcccccCCCCCCcEEEccCCcCcCcCCC--CCCCCCCCCccEEEcCCCccccc--------C
Q 039564           16 KHLKALDLSSNKLHGNI-PKWLLNPSMQNFSYLNLSKNSLTGFDQH--PSVFPWSSGEFTLDLSSNFLQGP--------I   84 (485)
Q Consensus        16 ~~L~~L~Ls~n~~~~~~-p~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~lL~~L~l~~n~l~~~--------~   84 (485)
                      ++|+.||+++|++++.. .+.+.  .++++++|+|++|.++.....  .......+.|++|||++|.|+..        .
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~--~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHH--hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            36899999999998633 22344  689999999999988732100  01223344459999999998631        1


Q ss_pred             CCCCCCCcEEEccCCccccc----CChhhcCCCCCCEEEcccCcccccCCCcccc-------------------------
Q 039564           85 PAPPTKTRHYLVSKNNLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGN-------------------------  135 (485)
Q Consensus        85 ~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-------------------------  135 (485)
                      .....+|++|++++|.++..    ++..+..+++|++|++++|.+.......+..                         
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence            22246899999999999754    4556788999999999999876321111100                         


Q ss_pred             -CcccccCCCCccEEEccCCcccccCC----ccc-cCCCCCcEEEccCCcccCCc----ChhhhCCCCCCEEEeeccccc
Q 039564          136 -FSDTFMNGSNLGIIDMSHNLLQGRIP----KSL-ANCAVLEIIDLGNNQIIDTF----PAWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       136 -l~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~-~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~  205 (485)
                       +...+.....++.++++++......-    ..+ ........+++..+.+....    ...+...+.++.+.+.+|...
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence             00222334567777877776553211    111 12235667888877664321    123456789999999999764


Q ss_pred             cccCC---ccccCCCCCccEEEccCccCCccCChhh---hcccccceeccccchhhhhcccccccccccccCcCcccceE
Q 039564          206 GEIKE---HKMECGFPKLRIVDLSNNSFTGNLPSKY---FQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSL  279 (485)
Q Consensus       206 ~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (485)
                      .....   .........++.+++++|.+........   +.....+..+++..+..-......                 
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~-----------------  302 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL-----------------  302 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH-----------------
T ss_pred             ccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch-----------------
Confidence            32110   0111456789999999998874322211   223444555444432211000000                 


Q ss_pred             EeeecCcccccccccccccEEEcCCCcCcccCch----hhccCCCCCEEeCcCceeccc----CCcccc-CCCCCCEEEC
Q 039564          280 TMSNKGQMLSYEKIPYILTAVILSSNGFHGEIPT----SIANLKGLQVLSLANNNLEGH----IPSCFG-DLTKLESLDL  350 (485)
Q Consensus       280 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~L  350 (485)
                            ...........++.++++++.++.....    .+...++|++|+|++|+++..    ++..+. ..+.|++|+|
T Consensus       303 ------l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~L  376 (460)
T d1z7xw1         303 ------LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  376 (460)
T ss_dssp             ------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ------hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEEC
Confidence                  0000011123578888888877654333    234556788888888887642    222332 3566888888


Q ss_pred             CCCcCccc----CcccccCCCCCCEEeccCCcccc
Q 039564          351 SNNWFSGQ----IPQQLTGLTFLEFFNVSHNNLTG  381 (485)
Q Consensus       351 s~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~  381 (485)
                      ++|.++..    +.+.+..+++|++|++++|+++.
T Consensus       377 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            88888742    34455667888888888888763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3e-15  Score=137.05  Aligned_cols=225  Identities=17%  Similarity=0.167  Sum_probs=153.8

Q ss_pred             cEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc-CCccccCCCCC
Q 039564           92 RHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR-IPKSLANCAVL  170 (485)
Q Consensus        92 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L  170 (485)
                      +.+|++++.+.......+.. ..+..+.++...+......        .....+|++|+++++.+++. +...+..+++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~--------~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L   73 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE--------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL   73 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS--------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh--------hccCCCCCEEECCCCccCHHHHHHHHHhCCCc
Confidence            47899888775433332221 2345666666554422221        11236899999999988754 34557789999


Q ss_pred             cEEEccCCcccCCcChhhhCCCCCCEEEeeccc-cccccCCccccCCCCCccEEEccCcc-CCccCChhhhcccccceec
Q 039564          171 EIIDLGNNQIIDTFPAWLGTLSELDILVLQSNN-FHGEIKEHKMECGFPKLRIVDLSNNS-FTGNLPSKYFQCWNAMKFV  248 (485)
Q Consensus       171 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l  248 (485)
                      ++|++++|.+++..+..++.+++|++|+++++. ++...-..+ ...+++|++|+++++. ++.......+         
T Consensus        74 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l-~~~~~~L~~L~ls~c~~~~~~~~~~~~---------  143 (284)
T d2astb2          74 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKHVQVAV---------  143 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHHHHHHH---------
T ss_pred             ccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchh-hHHHHhccccccccccccccccchhhh---------
Confidence            999999999887777888899999999999864 432111111 1457899999998864 3210000000         


Q ss_pred             cccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEEcCCCc--Cccc-CchhhccCCCCCEEe
Q 039564          249 NASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVILSSNG--FHGE-IPTSIANLKGLQVLS  325 (485)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~-~p~~~~~l~~L~~L~  325 (485)
                                                                ....+.|+.|+++++.  ++.. +.....++++|++|+
T Consensus       144 ------------------------------------------~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         144 ------------------------------------------AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             ------------------------------------------HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             ------------------------------------------cccccccchhhhcccccccccccccccccccccccccc
Confidence                                                      0113448888888753  4322 333456789999999


Q ss_pred             CcCc-eecccCCccccCCCCCCEEECCCC-cCcccCcccccCCCCCCEEeccCC
Q 039564          326 LANN-NLEGHIPSCFGDLTKLESLDLSNN-WFSGQIPQQLTGLTFLEFFNVSHN  377 (485)
Q Consensus       326 Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~l~~N  377 (485)
                      +++| .+++.....+..+++|++|++++| .++......+.++++|+.|+++++
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9987 577777788899999999999996 677766677889999999999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-14  Score=119.91  Aligned_cols=106  Identities=19%  Similarity=0.151  Sum_probs=54.8

Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564           90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV  169 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  169 (485)
                      ++++|+|++|+|+ .++..+..+++|+.|++++|.++ .++        .|..+++|++|++++|.++...+..+..+++
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~--------~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD--------GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC--------CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC--------CcccCcchhhhhcccccccCCCccccccccc
Confidence            3444444444444 23444455566666666666555 222        1333455666666666665433333445556


Q ss_pred             CcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccc
Q 039564          170 LEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFH  205 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  205 (485)
                      |++|++++|.+..... ..+..+++|++|++++|.+.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc
Confidence            6666666665543321 34555556666666665554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=6e-14  Score=110.63  Aligned_cols=87  Identities=30%  Similarity=0.335  Sum_probs=41.6

Q ss_pred             hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcC-hh
Q 039564          109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFP-AW  187 (485)
Q Consensus       109 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~  187 (485)
                      +.++++|++|++++|.++ .+|..++.       +++|++|++++|.+++ +| .+..+++|++|++++|++..... ..
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~-------l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~   85 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAA-------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP   85 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGG-------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhh-------hhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchh
Confidence            444555555555555554 34432222       2455555555555542 22 34555555555555555543321 34


Q ss_pred             hhCCCCCCEEEeeccccc
Q 039564          188 LGTLSELDILVLQSNNFH  205 (485)
Q Consensus       188 ~~~l~~L~~L~L~~n~l~  205 (485)
                      +..+++|++|++++|++.
T Consensus        86 l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          86 LVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             GGGCTTCCEEECTTSGGG
T ss_pred             hcCCCCCCEEECCCCcCC
Confidence            455555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=5.9e-14  Score=110.71  Aligned_cols=101  Identities=25%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             cEEEcCCCcccccCCCC-CCCCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEE
Q 039564           71 FTLDLSSNFLQGPIPAP-PTKTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGII  149 (485)
Q Consensus        71 ~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L  149 (485)
                      |+|++++|+++....-. ++.|++|++++|.++ .+|..|+.+++|++|++++|.++ .+|.        +..+++|++|
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--------~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--------VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--------GTTCSSCCEE
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--------cccccccCeE
Confidence            34556666555332211 555566666666555 34555555566666666666555 2321        2334556666


Q ss_pred             EccCCcccccC-CccccCCCCCcEEEccCCccc
Q 039564          150 DMSHNLLQGRI-PKSLANCAVLEIIDLGNNQII  181 (485)
Q Consensus       150 ~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~  181 (485)
                      ++++|+++... ...+..+++|++|++++|+++
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            66666555322 134555555666666665554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=3.3e-15  Score=141.07  Aligned_cols=245  Identities=17%  Similarity=0.170  Sum_probs=130.8

Q ss_pred             CCCCcEEEccCCccccc----CChhhcCCCCCCEEEcccCccc---ccCCCccccCcccccCCCCccEEEccCCccccc-
Q 039564           88 PTKTRHYLVSKNNLTGE----IPSWICNLSSLYILDLSDNNLS---GELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR-  159 (485)
Q Consensus        88 ~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~-  159 (485)
                      ...+++|++++|.+...    +...+...++|+.|+++++...   ...|..+..+...+...++|++|++++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            34555555555555422    2223445566667776665432   112222222323444556677777777766543 


Q ss_pred             ---CCccccCCCCCcEEEccCCcccCCcChh-------------hhCCCCCCEEEeeccccccccCCccc--cCCCCCcc
Q 039564          160 ---IPKSLANCAVLEIIDLGNNQIIDTFPAW-------------LGTLSELDILVLQSNNFHGEIKEHKM--ECGFPKLR  221 (485)
Q Consensus       160 ---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~  221 (485)
                         +...+...++|++|++++|.+.......             ....+.|+.+.+++|.+.......+.  ....+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               2223345566777777766653211111             12355677777776665422111110  02345677


Q ss_pred             EEEccCccCCccCChhhhcccccceeccccchhhhhcccccccccccccCcCcccceEEeeecCcccccccccccccEEE
Q 039564          222 IVDLSNNSFTGNLPSKYFQCWNAMKFVNASQLRYMRNFLSSYFSFDFYGYFPHYYYSLTMSNKGQMLSYEKIPYILTAVI  301 (485)
Q Consensus       222 ~L~l~~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~  301 (485)
                      .|++++|.+...-....+.                                                ......+.|+.|+
T Consensus       190 ~L~L~~n~i~~~g~~~~l~------------------------------------------------~~l~~~~~L~~L~  221 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLL------------------------------------------------EGLAYCQELKVLD  221 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHH------------------------------------------------TTGGGCTTCCEEE
T ss_pred             ccccccccccccccccchh------------------------------------------------hhhcchhhhcccc
Confidence            7777776654210000000                                                0001134477888


Q ss_pred             cCCCcCccc----CchhhccCCCCCEEeCcCceecccCCcc----cc--CCCCCCEEECCCCcCccc----Ccccc-cCC
Q 039564          302 LSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGHIPSC----FG--DLTKLESLDLSNNWFSGQ----IPQQL-TGL  366 (485)
Q Consensus       302 Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~--~l~~L~~L~Ls~N~l~~~----~p~~~-~~l  366 (485)
                      +++|.++..    +...+..+++|++|+|++|.+++.....    +.  ..+.|++|++++|.+...    +...+ .+.
T Consensus       222 Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~  301 (344)
T d2ca6a1         222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM  301 (344)
T ss_dssp             CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccC
Confidence            888877533    3345667788888888888876432222    22  235688888888888643    22333 246


Q ss_pred             CCCCEEeccCCccc
Q 039564          367 TFLEFFNVSHNNLT  380 (485)
Q Consensus       367 ~~L~~L~l~~N~l~  380 (485)
                      +.|+.|++++|.+.
T Consensus       302 ~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         302 PDLLFLELNGNRFS  315 (344)
T ss_dssp             TTCCEEECTTSBSC
T ss_pred             CCCCEEECCCCcCC
Confidence            78888888888875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=2.9e-15  Score=141.50  Aligned_cols=208  Identities=18%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             CCChhhhCCCCCCEEECCCCcCCCCCC----cccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccc
Q 039564            7 EFPNFLKQQKHLKALDLSSNKLHGNIP----KWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQG   82 (485)
Q Consensus         7 ~~p~~~~~l~~L~~L~Ls~n~~~~~~p----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~   82 (485)
                      .+...+.+...|+.|+|++|.+.....    ..+.  ..++|+.|+++++........ .....    .       .+..
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~l~l~~~~~~~~~~~-~~~~~----~-------~l~~   87 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA--SKKDLEIAEFSDIFTGRVKDE-IPEAL----R-------LLLQ   87 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTT--TCTTCCEEECCSCCTTSCGGG-SHHHH----H-------HHHH
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHH--hCCCCCEEECCCCcccccccc-cchHH----H-------HHHH
Confidence            445566777888888888887754322    2344  567788888887755432110 00000    0       0000


Q ss_pred             cCCCCCCCCcEEEccCCccccc----CChhhcCCCCCCEEEcccCcccccCCCcccc----Cc--ccccCCCCccEEEcc
Q 039564           83 PIPAPPTKTRHYLVSKNNLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGN----FS--DTFMNGSNLGIIDMS  152 (485)
Q Consensus        83 ~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~----l~--~~~~~l~~L~~L~Ls  152 (485)
                       .-...++|++|++++|.+...    +...+...++|+.|++++|.+.......++.    +.  ......+.|+.++++
T Consensus        88 -~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          88 -ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             -HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             -HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence             000033455555555554432    2233445666777777776654211111100    00  011234667777777


Q ss_pred             CCccccc----CCccccCCCCCcEEEccCCcccCC-----cChhhhCCCCCCEEEeeccccccc----cCCccccCCCCC
Q 039564          153 HNLLQGR----IPKSLANCAVLEIIDLGNNQIIDT-----FPAWLGTLSELDILVLQSNNFHGE----IKEHKMECGFPK  219 (485)
Q Consensus       153 ~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~  219 (485)
                      +|.++..    +...+...+.|++|++++|.+...     +...+...++|+.|++++|.+...    +...+  ...++
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l--~~~~~  244 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL--KSWPN  244 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG--GGCTT
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc--ccccc
Confidence            7776532    223345567788888888776532     223355677888888888876532    22223  45678


Q ss_pred             ccEEEccCccCC
Q 039564          220 LRIVDLSNNSFT  231 (485)
Q Consensus       220 L~~L~l~~n~l~  231 (485)
                      |++|++++|.+.
T Consensus       245 L~~L~Ls~n~i~  256 (344)
T d2ca6a1         245 LRELGLNDCLLS  256 (344)
T ss_dssp             CCEEECTTCCCC
T ss_pred             chhhhhhcCccC
Confidence            888888888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.2e-14  Score=116.73  Aligned_cols=132  Identities=17%  Similarity=0.138  Sum_probs=106.0

Q ss_pred             hhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccCCcChh
Q 039564          108 WICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAW  187 (485)
Q Consensus       108 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  187 (485)
                      .|.+..++++|+|++|+++ .+|..       +..+++|+.|++++|.++. + +.|..+++|++|++++|+++...+..
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~-------~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENL-------GATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCG-------GGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             hccCcCcCcEEECCCCCCC-ccCcc-------ccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccc
Confidence            3667889999999999998 66643       3345899999999999994 4 46899999999999999998877777


Q ss_pred             hhCCCCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCccCCh---hhhcccccceecccc
Q 039564          188 LGTLSELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTGNLPS---KYFQCWNAMKFVNAS  251 (485)
Q Consensus       188 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~l~~~  251 (485)
                      +..+++|++|++++|++. .++.......+++|+++++++|+++ ..+.   ..+..+++|+.++-.
T Consensus        83 ~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          83 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccccccceecccccc-ccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCCC
Confidence            889999999999999997 3433211267899999999999997 5553   346677888877643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.8e-13  Score=111.46  Aligned_cols=111  Identities=17%  Similarity=0.144  Sum_probs=91.7

Q ss_pred             ccEEEcCCCcCcccCchhhccCCCCCEEeCcCc-eecccCCccccCCCCCCEEECCCCcCcccCcccccCCCCCCEEecc
Q 039564          297 LTAVILSSNGFHGEIPTSIANLKGLQVLSLANN-NLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQQLTGLTFLEFFNVS  375 (485)
Q Consensus       297 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  375 (485)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+.+.|..|..+++|+.|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            456778888877 67777888899999999876 4886777789999999999999999998888889999999999999


Q ss_pred             CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039564          376 HNNLTGPIPEANQFPTFDSSSFDGNSGLCGKPL  408 (485)
Q Consensus       376 ~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~  408 (485)
                      +|+++...+.......+..+.+++||+.|+|.+
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             CCCCcccChhhhccccccccccCCCcccCCchH
Confidence            999985544444455678888999999998855

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=2.5e-14  Score=123.05  Aligned_cols=129  Identities=19%  Similarity=0.209  Sum_probs=74.6

Q ss_pred             CCcccccCCCCCCcEEEccCCcCcCcCCCCCCCCCCCCccEEEcCCCcccccCCCC--CCCCcEEEccCCcccccCChhh
Q 039564           32 IPKWLLNPSMQNFSYLNLSKNSLTGFDQHPSVFPWSSGEFTLDLSSNFLQGPIPAP--PTKTRHYLVSKNNLTGEIPSWI  109 (485)
Q Consensus        32 ~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lL~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~  109 (485)
                      ++.++.  .+++|++|+|++|.|+.+.   .+..+..+ ++|++++|.|+...+..  ++.|++|++++|.++. + ..+
T Consensus        40 l~~sl~--~L~~L~~L~Ls~n~I~~i~---~l~~l~~L-~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~  111 (198)
T d1m9la_          40 MDATLS--TLKACKHLALSTNNIEKIS---SLSGMENL-RILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-L-SGI  111 (198)
T ss_dssp             CHHHHH--HTTTCCEEECSEEEESCCC---CHHHHTTC-CEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC-H-HHH
T ss_pred             hhhHHh--cccccceeECcccCCCCcc---cccCCccc-cChhhcccccccccccccccccccccccccccccc-c-ccc
Confidence            344455  5566666666666665431   23333333 66666666655332111  3456666666666663 2 346


Q ss_pred             cCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCcc----------ccCCCCCcEEE
Q 039564          110 CNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKS----------LANCAVLEIID  174 (485)
Q Consensus       110 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~----------~~~l~~L~~L~  174 (485)
                      ..+++|++|++++|+++ .++. +    ..+..+++|+.|++++|.+....+..          +..+++|++||
T Consensus       112 ~~l~~L~~L~L~~N~i~-~~~~-~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKIT-NWGE-I----DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECC-CHHH-H----HHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhc-cccc-c----ccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            67777888888888776 2221 1    23455678888888888776544332          45688888886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=5.2e-14  Score=121.00  Aligned_cols=123  Identities=23%  Similarity=0.317  Sum_probs=81.8

Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCC
Q 039564           90 KTRHYLVSKNNLTGEIPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAV  169 (485)
Q Consensus        90 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  169 (485)
                      +|++|++++|.|+ .++ .+.++++|++|++++|.++ .+|....       .+++|++|++++|.++..  +.+..+++
T Consensus        49 ~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~-------~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          49 ACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDA-------VADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             TCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHH-------HHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             ccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccc-------cccccccccccccccccc--cccccccc
Confidence            4445555555554 333 3677888888888888876 5553222       125688888888888743  34677888


Q ss_pred             CcEEEccCCcccCCcC-hhhhCCCCCCEEEeeccccccccCCccc--------cCCCCCccEEE
Q 039564          170 LEIIDLGNNQIIDTFP-AWLGTLSELDILVLQSNNFHGEIKEHKM--------ECGFPKLRIVD  224 (485)
Q Consensus       170 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------~~~l~~L~~L~  224 (485)
                      |++|++++|+++.... ..+..+++|+.|++++|++....+....        ...+|+|+.||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888888888865432 4678888888888888887644333210        14578888887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-11  Score=101.55  Aligned_cols=109  Identities=16%  Similarity=0.060  Sum_probs=74.7

Q ss_pred             CCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCC-cccccCCccccCCCCCcEEEccCCcccCCcChhhhCC
Q 039564          113 SSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHN-LLQGRIPKSLANCAVLEIIDLGNNQIIDTFPAWLGTL  191 (485)
Q Consensus       113 ~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  191 (485)
                      ...+.++.+++.+. ..|..+.       .+++|++|++++| .++...+.+|.++++|+.|++++|+++.+.+.+|..+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~-------~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l   79 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLP-------GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT   79 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSC-------SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred             CCCCeEEecCCCCc-cCccccc-------CccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccc
Confidence            34455666666665 4554433       3467777777655 4775566677888888888888888877777778888


Q ss_pred             CCCCEEEeeccccccccCCccccCCCCCccEEEccCccCCc
Q 039564          192 SELDILVLQSNNFHGEIKEHKMECGFPKLRIVDLSNNSFTG  232 (485)
Q Consensus       192 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  232 (485)
                      ++|++|+|++|++. .++...  ....+|+.|++++|.+..
T Consensus        80 ~~L~~L~Ls~N~l~-~l~~~~--~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          80 PRLSRLNLSFNALE-SLSWKT--VQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             SCCCEEECCSSCCS-CCCSTT--TCSCCCCEEECCSSCCCC
T ss_pred             ccccceeccCCCCc-ccChhh--hccccccccccCCCcccC
Confidence            88888888888887 444443  233468888888888763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.2e-08  Score=83.69  Aligned_cols=72  Identities=28%  Similarity=0.278  Sum_probs=34.3

Q ss_pred             ChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCcccccCCccccCCCCCcEEEccCCcccC
Q 039564          106 PSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGRIPKSLANCAVLEIIDLGNNQIID  182 (485)
Q Consensus       106 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~  182 (485)
                      +..+.++++|++|+|++|+++ .++.    +...+..+++|+.|++++|.|+...+-.+.....|+.|++++|++..
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~-~l~~----~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLY-RLDD----MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCC-CCSG----GGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHHhCCCCCEeeCCCcccc-CCch----hHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            334445666666666666665 2211    00112234555555555555553222222233345555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.2e-07  Score=74.24  Aligned_cols=80  Identities=21%  Similarity=0.101  Sum_probs=40.7

Q ss_pred             cccccEEEcCCCcCcccC--chhhccCCCCCEEeCcCceecccCCccccCCCCCCEEECCCCcCcccCcc-------ccc
Q 039564          294 PYILTAVILSSNGFHGEI--PTSIANLKGLQVLSLANNNLEGHIPSCFGDLTKLESLDLSNNWFSGQIPQ-------QLT  364 (485)
Q Consensus       294 ~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~~~  364 (485)
                      ++.|+.|+|++|+++...  +..+..+++|+.|+|++|.++...+..+.....|+.|++++|.+......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            344666666666665321  23345566666666666666533322333334566666666666543221       234


Q ss_pred             CCCCCCEEe
Q 039564          365 GLTFLEFFN  373 (485)
Q Consensus       365 ~l~~L~~L~  373 (485)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            455565543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=3e-06  Score=69.36  Aligned_cols=68  Identities=16%  Similarity=0.261  Sum_probs=28.6

Q ss_pred             hcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc----CCccccCCCCCcEEEccCCc
Q 039564          109 ICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR----IPKSLANCAVLEIIDLGNNQ  179 (485)
Q Consensus       109 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~  179 (485)
                      +...+.|++|+|++|.+.......++   ..+...+.|++|++++|.+++.    +-..+...++|++|++++|.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la---~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLI---ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHH---HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HhhCCccceeeccccccchhHHHHHh---hhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34445555555555554422111111   2223334455555555554422    11223344445555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=2.4e-05  Score=63.73  Aligned_cols=82  Identities=13%  Similarity=0.076  Sum_probs=43.2

Q ss_pred             ccEEEcCCCcCccc----CchhhccCCCCCEEeCcCceeccc----CCccccCCCCCCEEECCCCcCccc-------Ccc
Q 039564          297 LTAVILSSNGFHGE----IPTSIANLKGLQVLSLANNNLEGH----IPSCFGDLTKLESLDLSNNWFSGQ-------IPQ  361 (485)
Q Consensus       297 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-------~p~  361 (485)
                      |+.|++++|.+...    +...+...+.|++|+|++|.++..    +-..+...++|+.|++++|++...       +..
T Consensus        46 L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~  125 (167)
T d1pgva_          46 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM  125 (167)
T ss_dssp             CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred             cceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHH
Confidence            55555555554422    223344456677777777766532    122344556677777776654422       223


Q ss_pred             cccCCCCCCEEeccCCc
Q 039564          362 QLTGLTFLEFFNVSHNN  378 (485)
Q Consensus       362 ~~~~l~~L~~L~l~~N~  378 (485)
                      .+...++|+.|+++.+.
T Consensus       126 ~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         126 AIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHCSSCCEEECCCCC
T ss_pred             HHHhCCCccEeeCcCCC
Confidence            34445667777665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.13  E-value=4.2e-05  Score=62.16  Aligned_cols=87  Identities=11%  Similarity=0.048  Sum_probs=37.5

Q ss_pred             cCCCCccEEEccCCcccccC----CccccCCCCCcEEEccCCcccCC----cChhhhCCCCCCEEEee--ccccccc---
Q 039564          141 MNGSNLGIIDMSHNLLQGRI----PKSLANCAVLEIIDLGNNQIIDT----FPAWLGTLSELDILVLQ--SNNFHGE---  207 (485)
Q Consensus       141 ~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~--~n~l~~~---  207 (485)
                      ...+.|++|++++|.++...    -+.+...++++.+++++|.+...    +...+...++|+.++|.  +|.+...   
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            33445555555555544221    12233445555555555554322    11233445555554443  3333221   


Q ss_pred             -cCCccccCCCCCccEEEccCcc
Q 039564          208 -IKEHKMECGFPKLRIVDLSNNS  229 (485)
Q Consensus       208 -~~~~~~~~~l~~L~~L~l~~n~  229 (485)
                       +...+  ...++|+.|+++.+.
T Consensus       123 ~La~~L--~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         123 EIANML--EKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHH--HHCSSCCEEECCCSS
T ss_pred             HHHHHH--HhCCCcCEEeCcCCC
Confidence             11111  234566666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.94  E-value=4.4e-05  Score=62.05  Aligned_cols=114  Identities=7%  Similarity=0.081  Sum_probs=77.0

Q ss_pred             CCCCcEEEccC-Cccccc----CChhhcCCCCCCEEEcccCcccccCCCccccCcccccCCCCccEEEccCCccccc---
Q 039564           88 PTKTRHYLVSK-NNLTGE----IPSWICNLSSLYILDLSDNNLSGELPRCLGNFSDTFMNGSNLGIIDMSHNLLQGR---  159 (485)
Q Consensus        88 ~~~L~~L~l~~-n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~~~~~l~~L~~L~Ls~n~i~~~---  159 (485)
                      .+.|++|++++ +.++..    +-.++...++|++|++++|.++...-..   +...+...+.++.+++++|.+...   
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~---L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA---LAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH---HHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHH---HHHHHhhcccchhhhhccccccchhHH
Confidence            57889999987 456532    2344567888999999999876432222   224455668899999999888643   


Q ss_pred             -CCccccCCCCCcEEEc--cCCcccC----CcChhhhCCCCCCEEEeecccc
Q 039564          160 -IPKSLANCAVLEIIDL--GNNQIID----TFPAWLGTLSELDILVLQSNNF  204 (485)
Q Consensus       160 -~~~~~~~l~~L~~L~L--s~n~l~~----~~~~~~~~l~~L~~L~L~~n~l  204 (485)
                       +...+...++|+.++|  ++|.+..    .+...+...++|+.|++..+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             3355667788887655  4566643    2334556788999999877654