Citrus Sinensis ID: 039577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST
Secondary Structure (PSIPRED)
ccEEcccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccEEEEccccccccccccccEEccccccccccccHHHHcccccccEEccccEEcccccccccccccccEEccccccEEcccHHHHccccccEEEcccccccccccccccccccHHHHccccccEEEccccccEEEcccHHHcccccccccccccccEEEcccccEEccccccccccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccEEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccHHHHHHHHHccEEEcccccccccccHHHcccccccEEccHcccEEEcccccccccccHHHHcccccEEEEccccccccc
Coil and Loop (DISEMBL)
vgvtcgvphrrvtalslpnltlggtipphignLSFLVSLTSVAKSFYGTLPNELWQLQRLRIvdlssgiipgslpddtsgdcimlRRLSFSFnkirgwipqkigNLTELVELYLDgnnlqagllpsvifnssNIQVIILYGNhlsghlrssiylpnlenlflwqnnlcgivpdsicnaSEVTILELSKNLFsclipntsgvfpnsignLSTSLENFYASscqlsggipvgfgnlSNMIKCNLESLFGLllggdalegqipTCLANLTSLISLNLRSIRLNST
Flexible Loop (DISEMBL)
vgvtcgvphrrvTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIpgslpddtsgdCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLtslislnlrsirlnst
Low Complexity Region (SEG)
VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANltslislnlrsirlnst
Disordered region (IsUnstruct)
***TCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSI*****
Disordered Region (DISOPRED)
VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN**
Disordered Region (DISEMBL)
VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST
Disordered Region (DISPRO)
VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.953	0.266	0.339	2e-28
Q9LHP4	1141	Receptor-like protein kin	no	no	0.932	0.230	0.343	3e-24
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.932	0.210	0.309	7e-24
P93194	1109	Receptor-like protein kin	N/A	no	0.907	0.230	0.327	7e-23
C0LGT6	1031	LRR receptor-like serine/	no	no	0.953	0.260	0.305	1e-22
Q9SD62	1025	Putative receptor-like pr	no	no	0.939	0.258	0.283	2e-22
O49318	1124	Probable leucine-rich rep	no	no	0.943	0.236	0.300	7e-22
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.960	0.246	0.312	2e-21
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.932	0.241	0.337	2e-21
Q9LP24	1120	Probable leucine-rich rep	no	no	0.875	0.220	0.326	3e-21

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 160/315 (50%), Gaps = 46/315 (14%)

Query: 2   GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLR 61
           GVTCG  ++RVT L L  L LGG I P IGNLSFLVSL      F GT+P E+ QL RL 
Sbjct: 58  GVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLE 117

Query: 62  IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA 121
            +D+    + G +P     +C  L  L    N++ G +P ++G+LT LV+L L GNN++ 
Sbjct: 118 YLDMGINYLRGPIPLGLY-NCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMR- 175

Query: 122 GLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASE 180
           G LP+ + N + ++ + L  N+L G + S +  L  + +L L  NN  G+ P ++ N S 
Sbjct: 176 GKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSS 235

Query: 181 VTILELSKNLFS--------CLIPNT----------SGVFPNSIGNLSTSLENFYASSCQ 222
           + +L +  N FS         L+PN           +G  P ++ N+ST LE    +   
Sbjct: 236 LKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNIST-LERLGMNENN 294

Query: 223 LSGGIPVGFGNLSNMI----------------------KCNLESLFGLLLGGDALEGQIP 260
           L+G IP  FGN+ N+                         N   L  L +G + L G +P
Sbjct: 295 LTGSIPT-FGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLP 353

Query: 261 TCLANLTS-LISLNL 274
             +ANL++ L++L+L
Sbjct: 354 ISIANLSAKLVTLDL 368

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 144/291 (49%), Gaps = 28/291 (9%)

Query: 10  RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS-SG 68
           R +  L L +  L G IPP I   S L SL        G++P EL +L  L ++ +  + 
Sbjct: 153 RNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNK 212

Query: 69  IIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVI 128
            I G +P +  GDC  L  L  +   + G +P  +G L +L  L +    + +G +PS +
Sbjct: 213 EISGQIPSEI-GDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSI-YTTMISGEIPSDL 270

Query: 129 FNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELS 187
            N S +  + LY N LSG +   I  L  LE LFLWQN+L G +P+ I N S + +++LS
Sbjct: 271 GNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLS 330

Query: 188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLES--L 245
            NL        SG  P+SIG LS  LE F  S  + SG IP    N S++++  L+   +
Sbjct: 331 LNLL-------SGSIPSSIGRLSF-LEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQI 382

Query: 246 FGLL---LG-----------GDALEGQIPTCLANLTSLISLNLRSIRLNST 282
            GL+   LG            + LEG IP  LA+ T L +L+L    L  T
Sbjct: 383 SGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGT 433

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 145/313 (46%), Gaps = 50/313 (15%)

Query: 11  RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGII 70
           ++  LSL    L G IP  + +L  L +L   A +  G +P E W + +L  + L++  +
Sbjct: 264 QLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHL 323

Query: 71  PGSLPDDT-----------------SGD-------CIMLRRLSFSFNKIRGWIPQKIGNL 106
            GSLP                    SG+       C  L++L  S N + G IP+ +  L
Sbjct: 324 SGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFEL 383

Query: 107 TELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQN 165
            EL +LYL  N L+  L PS I N +N+Q ++LY N+L G L   I  L  LE LFL++N
Sbjct: 384 VELTDLYLHNNTLEGTLSPS-ISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYEN 442

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225
              G +P  I N + + ++++  N F        G  P SIG L   L   +    +L G
Sbjct: 443 RFSGEIPQEIGNCTSLKMIDMFGNHF-------EGEIPPSIGRLK-ELNLLHLRQNELVG 494

Query: 226 GIPVGFGN---------LSNMIKCNLESLFGLLLG-------GDALEGQIPTCLANLTSL 269
           G+P   GN           N +  ++ S FG L G        ++L+G +P  L +L +L
Sbjct: 495 GLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNL 554

Query: 270 ISLNLRSIRLNST 282
             +NL   RLN T
Sbjct: 555 TRINLSHNRLNGT 567

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  107 bits (268), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 145/308 (47%), Gaps = 52/308 (16%)

Query: 1   VGVTCGVPHRR--VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQ 58
           +GV C    RR  V  L+L +  + G   P I +L  L  +      F+G++P++L    
Sbjct: 60  LGVEC---DRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCS 116

Query: 59  RLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK------------------------ 94
            L  +DLSS    G++P DT G    LR LS  FN                         
Sbjct: 117 LLEHIDLSSNSFTGNIP-DTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNG 175

Query: 95  IRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYL 154
           + G IP  IGN++EL  L+LD N   +G +PS + N + +Q + L  N+L G L   + L
Sbjct: 176 LNGSIPSNIGNMSELTTLWLDDNQF-SGPVPSSLGNITTLQELYLNDNNLVGTL--PVTL 232

Query: 155 PNLENLF---LWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLST 211
            NLENL    +  N+L G +P    +  ++  + LS N F       +G  P  +GN  T
Sbjct: 233 NNLENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQF-------TGGLPPGLGN-CT 284

Query: 212 SLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLIS 271
           SL  F A SC LSG IP  FG L+      L++L+   L G+   G+IP  L    S+I 
Sbjct: 285 SLREFGAFSCALSGPIPSCFGQLT-----KLDTLY---LAGNHFSGRIPPELGKCKSMID 336

Query: 272 LNLRSIRL 279
           L L+  +L
Sbjct: 337 LQLQQNQL 344

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 149/318 (46%), Gaps = 49/318 (15%)

Query: 1   VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRL 60
           +GVTCG    RV +L+L    L G I P IGNLSFL  L     SF  T+P ++ +L RL
Sbjct: 64  IGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRL 123

Query: 61  RIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQ 120
           + +++S  ++ G +P   S +C  L  +  S N +   +P ++G+L++L  L L  NNL 
Sbjct: 124 QYLNMSYNLLEGRIPSSLS-NCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNL- 181

Query: 121 AGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQ---NNLCGIVPDSICN 177
            G  P+ + N +++Q +    N + G +   +    L  +  +Q   N+  G  P ++ N
Sbjct: 182 TGNFPASLGNLTSLQKLDFAYNQMRGEIPDEV--ARLTQMVFFQIALNSFSGGFPPALYN 239

Query: 178 ASEVTILELSKNLFSCLIP------------------NTSGVFPNSIGNLSTSLENFYAS 219
            S +  L L+ N FS  +                     +G  P ++ N+S SLE F  S
Sbjct: 240 ISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANIS-SLERFDIS 298

Query: 220 SCQLSGGIPVGFGNLSNM----------------------IKCNLESLFGLLLGGDALEG 257
           S  LSG IP+ FG L N+                         N   L  L +G + L G
Sbjct: 299 SNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGG 358

Query: 258 QIPTCLANL-TSLISLNL 274
           ++P  +ANL T+L SL L
Sbjct: 359 ELPASIANLSTTLTSLFL 376

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 151/346 (43%), Gaps = 81/346 (23%)

Query: 1   VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRL 60
            GV CG+ HRRVT + L  L L G + P +GNLSFL SL      F+G +P+E+  L RL
Sbjct: 72  TGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRL 131

Query: 61  RIVDLSS----GIIP--------------------------------------------G 72
           + +++S+    G+IP                                            G
Sbjct: 132 QYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTG 191

Query: 73  SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS 132
             P  + G+   L+ L F +N+I G IP  I  L +++   +  N    G+ P  I+N S
Sbjct: 192 KFP-ASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFN-GVFPPPIYNLS 249

Query: 133 NIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNL 190
           ++  + + GN  SG LR      LPNL+ L++  N+  G +P+++ N S +  L++  N 
Sbjct: 250 SLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNH 309

Query: 191 FSCLIPNTSG--------------VFPNSIGNLS--------TSLENFYASSCQLSGGIP 228
            +  IP + G              +   S G+L         + L+       +L G +P
Sbjct: 310 LTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLP 369

Query: 229 VGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL 274
           V   NLS         L  L LGG+ + G IP  + NL SL +L+L
Sbjct: 370 VFIANLST-------QLTELSLGGNLISGSIPHGIGNLVSLQTLDL 408

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 37/303 (12%)

Query: 11  RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGII 70
           ++ + ++ N  L G +P  IG+L  L  L +   +  G LP  L  L +L          
Sbjct: 158 QLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDF 217

Query: 71  PGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFN 130
            G++P +  G C+ L+ L  + N I G +P++IG L +L E+ L  N   +G +P  I N
Sbjct: 218 SGNIPTEI-GKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKF-SGFIPKDIGN 275

Query: 131 SSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
            ++++ + LYGN L G + S I  + +L+ L+L+QN L G +P  +   S+V  ++ S+N
Sbjct: 276 LTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSEN 335

Query: 190 LFSCLIP-----------------NTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFG 232
           L S  IP                   +G+ PN +  L  +L     S   L+G IP GF 
Sbjct: 336 LLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLR-NLAKLDLSINSLTGPIPPGFQ 394

Query: 233 NLSNMIKCNL--ESLFGLLLGG--------------DALEGQIPTCLANLTSLISLNLRS 276
           NL++M +  L   SL G++  G              + L G+IP  +   ++LI LNL S
Sbjct: 395 NLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGS 454

Query: 277 IRL 279
            R+
Sbjct: 455 NRI 457

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 147/323 (45%), Gaps = 52/323 (16%)

Query: 1   VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRL 60
            G+ C    R VT++ L  + L GT+ P I  L  L  L        G +P +L   + L
Sbjct: 59  TGIAC-THLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSL 117

Query: 61  RIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQ 120
            ++DL +    G +P   +   I L++L    N + G IP++IGNL+ L EL +  NNL 
Sbjct: 118 EVLDLCTNRFHGVIPIQLTM-IITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLT 176

Query: 121 -----------------------AGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPN 156
                                  +G++PS I    +++V+ L  N L G L   +  L N
Sbjct: 177 GVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQN 236

Query: 157 LENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNT-----------------S 199
           L +L LWQN L G +P S+ N S + +L L +N F+  IP                   +
Sbjct: 237 LTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLT 296

Query: 200 GVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQI 259
           G  P  IGNL  + E  ++ + QL+G IP  FG++ N+    L  LF      + L G I
Sbjct: 297 GEIPREIGNLIDAAEIDFSEN-QLTGFIPKEFGHILNL---KLLHLF-----ENILLGPI 347

Query: 260 PTCLANLTSLISLNLRSIRLNST 282
           P  L  LT L  L+L   RLN T
Sbjct: 348 PRELGELTLLEKLDLSINRLNGT 370

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 134/290 (46%), Gaps = 27/290 (9%)

Query: 2   GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLR 61
           GV C +    V  L+L    L G +   IG L  LV+L     SF G LP+ L     L 
Sbjct: 68  GVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLE 127

Query: 62  IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA 121
            +DLS+    G +P D  G    L  L    N + G IP  +G L ELV+L +  NNL +
Sbjct: 128 YLDLSNNDFSGEVP-DIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNL-S 185

Query: 122 GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCGIVPDSICNASE 180
           G +P ++ N S ++ + L  N L+G L +S+Y L NL  LF+  N+L G +     N  +
Sbjct: 186 GTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKK 245

Query: 181 VTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKC 240
           +  L+LS N F        G  P  IGN S SL +     C L+G IP   G L  +   
Sbjct: 246 LVSLDLSFNDF-------QGGVPPEIGNCS-SLHSLVMVKCNLTGTIPSSMGMLRKVSVI 297

Query: 241 NL----------------ESLFGLLLGGDALEGQIPTCLANLTSLISLNL 274
           +L                 SL  L L  + L+G+IP  L+ L  L SL L
Sbjct: 298 DLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLEL 347

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 138/276 (50%), Gaps = 29/276 (10%)

Query: 22  LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD 81
           L GTIPP  GNLS L+          G +   L  L+ L ++ L    +   +P +  G+
Sbjct: 114 LSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSEL-GN 172

Query: 82  CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141
              +  L+ S NK+ G IP  +GNL  L+ LYL  N L  G++P  + N  ++  + L  
Sbjct: 173 MESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYL-TGVIPPELGNMESMTDLALSQ 231

Query: 142 NHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSG 200
           N L+G + S++  L NL  L+L++N L G++P  I N   +T L LS+N         +G
Sbjct: 232 NKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKL-------TG 284

Query: 201 VFPNSIGNLST-SLENFYASSCQLSGGIPVGFGNLSNMIKC----------------NLE 243
             P+S+GNL   +L + + +   L+GGIP   GN+ +MI                  NL+
Sbjct: 285 SIPSSLGNLKNLTLLSLFQN--YLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLK 342

Query: 244 SLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRL 279
           +L  L L  + L G IP  L N+ S+I L L + +L
Sbjct: 343 NLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKL 378

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
255583725	973	serine-threonine protein kinase, plant-t	0.996	0.288	0.332	2e-33
359483685	1046	PREDICTED: LRR receptor-like serine/thre	0.900	0.242	0.372	4e-33
296085726	932	unnamed protein product [Vitis vinifera]	0.886	0.268	0.359	7e-33
302142771	902	unnamed protein product [Vitis vinifera]	0.929	0.290	0.349	1e-32
9663990	1070	putative protein kinase Xa21 [Oryza sati	0.929	0.244	0.387	1e-32
115434584	1042	Os01g0153000 [Oryza sativa Japonica Grou	0.929	0.251	0.387	2e-32
359492792	1067	PREDICTED: probable LRR receptor-like se	0.957	0.253	0.377	6e-32
359485176	1160	PREDICTED: probable LRR receptor-like se	0.929	0.225	0.335	3e-30
359483677	1229	PREDICTED: LRR receptor-like serine/thre	0.950	0.218	0.322	5e-30
297831962	968	predicted protein [Arabidopsis lyrata su	0.957	0.278	0.319	6e-30

>gi|255583725|ref|XP_002532616.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527672|gb|EEF29782.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/397 (33%), Positives = 178/397 (44%), Gaps = 116/397 (29%)

Query: 1   VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLV--SLTSVAKSFYGTLPNELWQLQ 58
           +GVTCG  H RVTAL+L ++ L GTIPPH+GNLSFLV   L   A  + G +P  L+ L 
Sbjct: 68  IGVTCGARHNRVTALNLSHMGLAGTIPPHLGNLSFLVFGCLNMFAVLYIGVIPTSLFNLS 127

Query: 59  RLRIVDLSSGIIPGSLPD---------------DTSGDCI--------MLRRLSFSFNKI 95
           +L I  LSS  + G +P+               +   D I         L ++ FS N+ 
Sbjct: 128 KLSIFYLSSNNLQGYIPEAIGNLYSLRLLSLEKNEFSDSIPSSIFNISSLEQIDFSNNRF 187

Query: 96  RGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH--LRSSIY 153
            G IP +IGNL  L EL   G N  AG++PS I+N+S + VI L  N LSGH      + 
Sbjct: 188 SGIIPDEIGNLANL-ELINLGVNRLAGVVPSGIYNASKMMVISLSSNQLSGHLPSSLGLL 246

Query: 154 LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNT--------------- 198
           LPNL  LFL  NN  G +P S+ NASE+T++ L  N F   IP+                
Sbjct: 247 LPNLRRLFLGGNNFTGPIPISLSNASELTLIALPSNSFFGHIPDELGNLRSLQYLYLWGN 306

Query: 199 ---------------------------------SGVFPNSIGNLSTSLENFYASSCQLSG 225
                                            +G  P S+GNLS+SLE   A  C ++G
Sbjct: 307 HLTIKSLSSGLSLFNSLTKCKDLRILYLHDNPLNGTLPISVGNLSSSLEVLSAYRCGITG 366

Query: 226 GIPVGFG-------------NLSNMIK---------------------------CNLESL 245
            IP+  G             +L   I                            C+L+SL
Sbjct: 367 TIPIEIGNLSNLTLLSLYENDLRGTIPATIGKLRKLQALLLDHNKLEGVFPPELCDLQSL 426

Query: 246 FGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST 282
             L LG + L G IP+CL N+ SL +L+++  + NST
Sbjct: 427 AILSLGVNTLSGSIPSCLGNVDSLRNLSMQMNKFNST 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483685|ref|XP_002263372.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera]

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/290 (37%), Positives = 150/290 (51%), Gaps = 36/290 (12%)

Query: 2   GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLR 61
           G++C  P +RV+A++L N+ L GTI P +GNLSFLVSL      F G++PN +  L  L+
Sbjct: 43  GISCNAPQQRVSAINLSNMGLEGTIAPQVGNLSFLVSLDLTYNDFTGSIPNGIGNLVELQ 102

Query: 62  IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA 121
            + L +  + G +P + S  C  LR LS S N+  G IPQ IG+L+ L ELYL+ N L  
Sbjct: 103 RLSLRNNSLTGEIPSNLS-HCRELRGLSLSINQFTGGIPQAIGSLSNLEELYLNYNKLTG 161

Query: 122 GL-----------------------LPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPN 156
           G+                       +P+ IF  S++Q II   N LSG L   I  +LPN
Sbjct: 162 GIPREIGNLSNLNILQLGSNGISGPIPAEIFTVSSLQRIIFANNSLSGSLPMDICKHLPN 221

Query: 157 LENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENF 216
           L+ L+L QN+L G +P ++    E+  L L  N F       +G  P  IGNLS  LE  
Sbjct: 222 LQGLYLSQNHLSGQLPTTLSLCRELLSLALPMNKF-------TGSIPREIGNLS-KLEEI 273

Query: 217 YASSCQLSGGIPVGFGNLSNM--IKCNLESLFGLLLGGDALEGQIPTCLA 264
             S   L G IP  FGNL  +  +  N+  L  L L  + L G +P+ + 
Sbjct: 274 DLSENSLIGSIPTSFGNLMTLKFLSFNISKLQTLGLVQNHLSGSLPSSIG 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085726|emb|CBI29526.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 158/328 (48%), Gaps = 78/328 (23%)

Query: 11  RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGII 70
           ++  +SL      G+IP  I NL  L  L+    SF   L  E++ +  L+++  +   +
Sbjct: 88  QLQVISLAYNDFTGSIPSGIDNLVELQRLSLQNNSFTALLFAEIFNVSSLQVIAFTDNSL 147

Query: 71  PGSLPDDT-----------------SGD-------CIMLRRLSFSFNKIRGWIPQKIGNL 106
            GSLP D                  SG        C  L  LS SFNK RG IP++IGNL
Sbjct: 148 SGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSFNKFRGSIPKEIGNL 207

Query: 107 TELVELYLDGN-----------NLQA------------GLLPSVIFNSSNIQVIILYGNH 143
           ++L E+YL  N           NL+A            G +P  IFN S +Q + +  NH
Sbjct: 208 SKLEEIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIFNISKLQSLAMVKNH 267

Query: 144 LSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELS-------------- 187
           LSG L SSI  +LP+LE LF+  N   GI+P SI N S++T+L LS              
Sbjct: 268 LSGSLPSSIGTWLPDLEGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFTGNVGFLTSL 327

Query: 188 ------KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN 241
                 KNL+   IP   G  PNS+GNL  +LE+F AS+CQ  G IP G GNL+N+I+ +
Sbjct: 328 TNCKFLKNLWIGNIP-FKGTLPNSLGNLPIALESFIASACQFRGTIPTGIGNLTNLIRLD 386

Query: 242 LESLFGLLLGGDALEGQIPTCLANLTSL 269
                   LG + L G IPT L  L  L
Sbjct: 387 --------LGANDLTGSIPTTLGQLQKL 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142771|emb|CBI19974.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/323 (34%), Positives = 158/323 (48%), Gaps = 61/323 (18%)

Query: 1   VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRL 60
           VGV+C    +RVTAL+L  +   GTI P IGNLSFL  L     S +G LP  +  L+RL
Sbjct: 69  VGVSCSSHRQRVTALNLSFMGFQGTISPCIGNLSFLTVLDLSNNSIHGQLPETVGHLRRL 128

Query: 61  RIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQ 120
           R+++L S  + G +P   S  C  L+ L    N+ +G IP++I +L+ L EL L  N L 
Sbjct: 129 RVINLRSNNLEGKIPSSLS-QCRRLQWLLLRSNRFQGNIPKEIAHLSHLEELDLTMNRL- 186

Query: 121 AGLLPSVIFNSSNIQVIILYGNHLSG---HLRSSIYLPNLENLFLWQNNLCGIVPDSICN 177
            G +P  + N S ++++    N+L G      +S+ LP L  L L  N L G +P+SI N
Sbjct: 187 TGTIPLSLGNLSRLEILDFMYNYLDGGIPQQLTSLGLPKLNELNLRDNRLNGKIPNSISN 246

Query: 178 ASEVTILELSKNLFSCLIPNT--------------------------------------- 198
           AS +T LELS NL +  +P +                                       
Sbjct: 247 ASRLTFLELSNNLLNGPVPMSLGSLRFLRTLNLQRNQLSNDPSERELHFLSSLTGCRDLI 306

Query: 199 ---------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLL 249
                    +GV P SIGNLS+SLE F A + Q+ G +P+  GNLSN        L  L 
Sbjct: 307 NLVIGKNPINGVLPKSIGNLSSSLELFSADATQIKGSLPIKMGNLSN--------LLALE 358

Query: 250 LGGDALEGQIPTCLANLTSLISL 272
           L G+ L G +P+ L +L+ L  L
Sbjct: 359 LAGNDLIGTLPSSLGSLSRLQRL 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9663990|dbj|BAB03631.1| putative protein kinase Xa21 [Oryza sativa Japonica Group] gi|13872947|dbj|BAB44052.1| putative protein kinase Xa21 [Oryza sativa Japonica Group]

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 158/284 (55%), Gaps = 22/284 (7%)

Query: 2   GVTCGVPHR--RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQR 59
           GV C   HR  RV  LSLP+  L GT+PP IGNL+FL      +   +G +P  L  LQ 
Sbjct: 79  GVKCSR-HRPTRVVGLSLPSSNLAGTLPPAIGNLTFLRWFNLSSNGLHGEIPPSLGHLQH 137

Query: 60  LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGN-LTELVELYLDGNN 118
           LRI+DL S    G+ PD+ S  CI L  L+  +N++ G IP K+GN LT L +L+L GNN
Sbjct: 138 LRILDLGSNSFSGAFPDNLSS-CISLINLTLGYNQLSGHIPVKLGNTLTWLQKLHL-GNN 195

Query: 119 LQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICN 177
              G +P+ + N S+++ + L  NHL G + SS+  +PNL+ + L  N+L G  P SI N
Sbjct: 196 SFTGPIPASLANLSSLEFLKLDFNHLKGLIPSSLGNIPNLQKIGLDGNSLSGEFPPSIWN 255

Query: 178 ASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNM 237
            S++T+L++ +N          G  P +IG+   ++++F  S  Q SG IP    NLS  
Sbjct: 256 LSKLTVLQVYENKL-------KGSIPANIGDKLPNMQHFVLSVNQFSGVIPSSLFNLS-- 306

Query: 238 IKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                 SL  + L G+   G +P  +  L SL+ L+L S RL +
Sbjct: 307 ------SLTDVYLDGNKFSGFVPPTVGRLKSLVRLSLSSNRLEA 344

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115434584|ref|NP_001042050.1| Os01g0153000 [Oryza sativa Japonica Group] gi|113531581|dbj|BAF03964.1| Os01g0153000 [Oryza sativa Japonica Group] gi|125569065|gb|EAZ10580.1| hypothetical protein OsJ_00412 [Oryza sativa Japonica Group]

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 158/284 (55%), Gaps = 22/284 (7%)

Query: 2   GVTCGVPHR--RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQR 59
           GV C   HR  RV  LSLP+  L GT+PP IGNL+FL      +   +G +P  L  LQ 
Sbjct: 51  GVKCSR-HRPTRVVGLSLPSSNLAGTLPPAIGNLTFLRWFNLSSNGLHGEIPPSLGHLQH 109

Query: 60  LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGN-LTELVELYLDGNN 118
           LRI+DL S    G+ PD+ S  CI L  L+  +N++ G IP K+GN LT L +L+L GNN
Sbjct: 110 LRILDLGSNSFSGAFPDNLSS-CISLINLTLGYNQLSGHIPVKLGNTLTWLQKLHL-GNN 167

Query: 119 LQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICN 177
              G +P+ + N S+++ + L  NHL G + SS+  +PNL+ + L  N+L G  P SI N
Sbjct: 168 SFTGPIPASLANLSSLEFLKLDFNHLKGLIPSSLGNIPNLQKIGLDGNSLSGEFPPSIWN 227

Query: 178 ASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNM 237
            S++T+L++ +N          G  P +IG+   ++++F  S  Q SG IP    NLS  
Sbjct: 228 LSKLTVLQVYENKL-------KGSIPANIGDKLPNMQHFVLSVNQFSGVIPSSLFNLS-- 278

Query: 238 IKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                 SL  + L G+   G +P  +  L SL+ L+L S RL +
Sbjct: 279 ------SLTDVYLDGNKFSGFVPPTVGRLKSLVRLSLSSNRLEA 316

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492792|ref|XP_002278117.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 156/299 (52%), Gaps = 29/299 (9%)

Query: 1   VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRL 60
           VGV+C    +RVTAL+L  +   GTI P IGNLSFL  L     S +G LP  +  L+RL
Sbjct: 69  VGVSCSSHRQRVTALNLSFMGFQGTISPCIGNLSFLTVLDLSNNSIHGQLPETVGHLRRL 128

Query: 61  RIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQ 120
           R+++L S  + G +P   S  C  L+ L    N+ +G IP++I +L+ L EL L  N L 
Sbjct: 129 RVINLRSNNLEGKIPSSLS-QCRRLQWLLLRSNRFQGNIPKEIAHLSHLEELDLSENYL- 186

Query: 121 AGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNA 178
            G +PS IFN S ++ I L  N+LSG + ++I   LP+LE L+L  N L G  P S+CN 
Sbjct: 187 TGTIPSTIFNMSTLKYIDLVVNNLSGGIPTTICHKLPDLEVLYLSVNPLGGPFPASLCNC 246

Query: 179 SEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMI 238
           + +  +  ++N F        G  P  IG LS  LE    +  +L+G IP+  GNLS M 
Sbjct: 247 TSIRSISFNRNGF-------IGSIPADIGCLS-KLEGLGLAMNRLTGTIPLSLGNLSRMR 298

Query: 239 KC----------------NLESLFGLLLGGDALEGQIPTCLA-NLTSLISLNLRSIRLN 280
           +                 NL S + +   G+ L G IP   +  L  L  LNLR  RLN
Sbjct: 299 RLRIAYNNLSGGIPEAIFNLTSAYAISFMGNRLSGSIPELTSLGLPKLNELNLRDNRLN 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485176|ref|XP_002280075.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 155/322 (48%), Gaps = 60/322 (18%)

Query: 11  RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGII 70
           R+  ++L    L G IPP + N   L  L      F G +P+ +  L  +  + L    +
Sbjct: 319 RLQVINLSQNQLKGEIPPSLSNCGELQVLGLSINEFIGRIPSGIGNLSGIEKIYLGGNNL 378

Query: 71  PGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFN 130
            G++P  + G+   L+ L    NKI+G IP+++G+L+EL  L L  +N+  G +P  IFN
Sbjct: 379 MGTIPS-SFGNLSALKTLYLEKNKIQGNIPKELGHLSELQYLSL-ASNILTGSVPEAIFN 436

Query: 131 SSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188
            SN+Q I+L  NHLSG+L SSI   LP LE L +  N L GI+P SI N +++T L+LS 
Sbjct: 437 ISNLQFIVLADNHLSGNLPSSIGTSLPQLEELLIGGNYLSGIIPASISNITKLTRLDLSY 496

Query: 189 NLFSCLIPNT------------------------------------------------SG 200
           NL +  +P                                                   G
Sbjct: 497 NLLTGFVPKDLGNLRSLQHLGFGNNQLSGEYSTSELGFLTSLSNCKFLRNLWIQDNPLKG 556

Query: 201 VFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIP 260
             PNS+GNLS SL++  AS+CQ  G IP G GNL+N+I+        L LG + L G IP
Sbjct: 557 TLPNSLGNLSLSLQSINASACQFKGVIPAGIGNLTNLIE--------LGLGDNDLTGMIP 608

Query: 261 TCLANLTSLISLNLRSIRLNST 282
           T L  L  L  L +   R++ +
Sbjct: 609 TTLGQLKKLQRLYIAGNRIHGS 630

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 164/378 (43%), Gaps = 110/378 (29%)

Query: 4   TCGVPH-----RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQ 58
           T G+P        +  L L +  L G IP  IGNLS L  L   +    G +P E++ + 
Sbjct: 305 TGGIPQAIGSLSNLEELYLSHNKLTGGIPREIGNLSNLNILQLSSNGISGPIPAEIFNVS 364

Query: 59  RLRIVDLSSGIIPGSLPDDT-----------------SGD-------CIMLRRLSFSFNK 94
            L+++  +   + GSLP D                  SG        C  L  LS SFNK
Sbjct: 365 SLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSFNK 424

Query: 95  IRGWIPQKIGNLTELVELYLDGN-----------NLQA------------GLLPSVIFNS 131
            RG IP++IGNL++L ++YL  N           NL+A            G +P  IFN 
Sbjct: 425 FRGSIPKEIGNLSKLEKIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIFNI 484

Query: 132 SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
           S +Q + +  NHLSG L SSI  +L +LE LF+  N   GI+P SI N S++T+L LS N
Sbjct: 485 SKLQSLAMVKNHLSGSLPSSIGTWLSDLEGLFIAGNEFSGIIPMSISNMSKLTVLGLSAN 544

Query: 190 LFSCLIPNT------------------------------------------------SGV 201
            F+  +P                                                   G 
Sbjct: 545 SFTGNVPKDLGNLTKLKVLDLAGNQLTDEHVASEVGFLTSLTNCKFLKNLWIGNNPFKGT 604

Query: 202 FPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPT 261
            PNS+GNL  +LE+F AS+CQ  G IP   GNL+N+I         L LG + L G IPT
Sbjct: 605 LPNSLGNLPIALESFIASACQFRGTIPTRIGNLTNLI--------WLDLGANDLTGSIPT 656

Query: 262 CLANLTSLISLNLRSIRL 279
            L  L  L  L++   RL
Sbjct: 657 TLGRLKKLQKLHIVGNRL 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831962|ref|XP_002883863.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329703|gb|EFH60122.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 163/344 (47%), Gaps = 74/344 (21%)

Query: 2   GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLR 61
           GV CG  H+RV +L L  L LGG I P IGNLSFL+SL     +F GT+P E+  L RL+
Sbjct: 46  GVKCGSKHKRVISLDLNGLQLGGVISPSIGNLSFLISLDLSNNTFGGTIPEEVGNLFRLK 105

Query: 62  IVDLSSGIIPGSLPDDTS------------------------------------------ 79
            + ++S ++ G +P   S                                          
Sbjct: 106 YLYMASNVLGGRIPVSLSNCSRLLILILIKNHLGGGVPSELGSLTNLGILYLGRNNLKGK 165

Query: 80  -----GDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI 134
                G+   LR L F  N I G +P  +  LT+L+ L+L G+N+ +G+ PS I+N S++
Sbjct: 166 LPASIGNLTSLRYLGFGVNYIEGEVPDSMSKLTQLLRLHL-GSNIFSGVFPSCIYNLSSL 224

Query: 135 QVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS 192
           + + L+ N  SG +RS     LPNL++L + +N   G++P ++ N S +  L +  N  +
Sbjct: 225 EYLYLFDNGFSGSMRSDFGSLLPNLQDLNMGRNYYTGVIPTTLSNVSTLQRLVMEGNDLT 284

Query: 193 CLIPNTSGVFP---------NSIGNLS-------TSLENFYASSCQLSGGIPVGFGNLSN 236
             IP+  G  P         NS+G+ S        SL N Y +   +SG IP   GNL  
Sbjct: 285 GSIPHGFGKIPRLRILSLNQNSLGSQSFGDLEFLGSLINIYLAMNHISGNIPHDIGNLV- 343

Query: 237 MIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280
                  SL  L LG + L G +PT +  L+ L  L+L S R++
Sbjct: 344 -------SLRSLDLGDNMLTGLLPTSIGKLSELGVLSLYSNRIS 380

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.826	0.230	0.362	5.4e-30
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.858	0.236	0.363	7.9e-28
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.847	0.236	0.359	1.4e-26
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.815	0.201	0.348	7.7e-26
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.847	0.233	0.319	1.4e-25
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.875	0.244	0.332	1.6e-24
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.815	0.205	0.343	3e-24
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.879	0.223	0.323	4.8e-24
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.897	0.232	0.339	9.8e-24
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.826	0.225	0.326	3.1e-23

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 5.4e-30, P = 5.4e-30
 Identities = 92/254 (36%), Positives = 137/254 (53%)

Query:     2 GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLR 61
             GVTCG  ++RVT L L  L LGG I P IGNLSFLVSL      F GT+P E+ QL RL 
Sbjct:    58 GVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLE 117

Query:    62 IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA 121
              +D+    + G +P     +C  L  L    N++ G +P ++G+LT LV+L L GNN++ 
Sbjct:   118 YLDMGINYLRGPIPLGLY-NCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMR- 175

Query:   122 GLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASE 180
             G LP+ + N + ++ + L  N+L G + S +  L  + +L L  NN  G+ P ++ N S 
Sbjct:   176 GKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSS 235

Query:   181 VTILELSKNLFSC-LIPNTSGVFPNSI----------GNLSTSLENFYA------SSCQL 223
             + +L +  N FS  L P+   + PN +          G++ T+L N         +   L
Sbjct:   236 LKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNL 295

Query:   224 SGGIPVGFGNLSNM 237
             +G IP  FGN+ N+
Sbjct:   296 TGSIPT-FGNVPNL 308

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 311 (114.5 bits), Expect = 7.9e-28, Sum P(2) = 7.9e-28
 Identities = 95/261 (36%), Positives = 135/261 (51%)

Query:     1 VGVTCGV-----PHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELW 55
             VGV CG      PHR V  L L +  L G I P +GNLSFL  L        G +P EL 
Sbjct:    66 VGVVCGRRRRRHPHR-VVKLLLRSSNLSGIISPSLGNLSFLRELDLGDNYLSGEIPPELS 124

Query:    56 QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG-NLTELVELYL 114
             +L RL++++LS   I GS+P    G C  L  L  S N++RG IP++IG +L  L  LYL
Sbjct:   125 RLSRLQLLELSDNSIQGSIPA-AIGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYL 183

Query:   115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPD 173
               N L +G +PS + N +++Q   L  N LSG + SS+  L +L  + L QNNL G++P+
Sbjct:   184 YKNGL-SGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPN 242

Query:   174 SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGN 233
             SI N S +    + +N    +IP       N+   L   LE     + +  G IP    N
Sbjct:   243 SIWNLSSLRAFSVRENKLGGMIPT------NAFKTLHL-LEVIDMGTNRFHGKIPASVAN 295

Query:   234 LSNMIKCNLE-SLF-GLLLGG 252
              S++    +  +LF G++  G
Sbjct:   296 ASHLTVIQIYGNLFSGIITSG 316

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.4e-26, P = 1.4e-26
 Identities = 93/259 (35%), Positives = 131/259 (50%)

Query:     3 VTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRI 62
             V CG  H+RVT L L  L LGG I P IGNLSFL+ L     SF GT+P E+  L RL+ 
Sbjct:    59 VRCGRKHKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKY 118

Query:    63 VDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAG 122
             + +    + G +P   S +C  L  L    N +   +P ++G+L +L+ LYL  N+L+ G
Sbjct:   119 LAVGFNYLEGEIPASLS-NCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLK-G 176

Query:   123 LLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEV 181
               P  I N +++ V+ L  NHL G +   I  L  + +L L  NN  G+ P +  N S +
Sbjct:   177 KFPVFIRNLTSLIVLNLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSL 236

Query:   182 TILELSKNLFSC-LIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKC 240
               L L  N FS  L P+   + PN I  LS    NF      L+G IP    N+S +   
Sbjct:   237 ENLYLLGNGFSGNLKPDFGNLLPN-IHELSLH-GNF------LTGAIPTTLANISTL--- 285

Query:   241 NLESLFGLLLGGDALEGQI 259
                 +FG+  G + + G I
Sbjct:   286 ---EMFGI--GKNRMTGSI 299

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 7.7e-26, P = 7.7e-26
 Identities = 85/244 (34%), Positives = 124/244 (50%)

Query:    10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI 69
             R +  L L +  L G IPP I   S L SL        G++P EL +L  L ++ +    
Sbjct:   153 RNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNK 212

Query:    70 -IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVI 128
              I G +P +  GDC  L  L  +   + G +P  +G L +L  L +    + +G +PS +
Sbjct:   213 EISGQIPSEI-GDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIY-TTMISGEIPSDL 270

Query:   129 FNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELS 187
              N S +  + LY N LSG +   I  L  LE LFLWQN+L G +P+ I N S + +++LS
Sbjct:   271 GNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLS 330

Query:   188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLES--L 245
              NL S       G  P+SIG LS  LE F  S  + SG IP    N S++++  L+   +
Sbjct:   331 LNLLS-------GSIPSSIGRLSF-LEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQI 382

Query:   246 FGLL 249
              GL+
Sbjct:   383 SGLI 386

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 84/263 (31%), Positives = 134/263 (50%)

Query:     2 GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLR 61
             GV CG+ HRRVT + L  L L G + P +GNLSFL SL      F+G +P+E+  L RL+
Sbjct:    73 GVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQ 132

Query:    62 IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA 121
              +++S+ +  G +P   S +C  L  L  S N +   +P + G+L++LV L L  NNL  
Sbjct:   133 YLNMSNNLFGGVIPVVLS-NCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNL-T 190

Query:   122 GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQ---NNLCGIVPDSICNA 178
             G  P+ + N +++Q++    N + G +   I    L+ +  ++   N   G+ P  I N 
Sbjct:   191 GKFPASLGNLTSLQMLDFIYNQIEGEIPGDI--ARLKQMIFFRIALNKFNGVFPPPIYNL 248

Query:   179 SEVTILELSKNLFS--------CLIPNTSGVFP--NSI-GNLSTSLENFYA------SSC 221
             S +  L ++ N FS         L+PN   ++   NS  G +  +L N  +       S 
Sbjct:   249 SSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSN 308

Query:   222 QLSGGIPVGFGNLSNMIKCNLES 244
              L+G IP+ FG L N++   L +
Sbjct:   309 HLTGKIPLSFGRLQNLLLLGLNN 331

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 87/262 (33%), Positives = 134/262 (51%)

Query:     3 VTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRI 62
             VTCG  H+RVT L+L  L LGG + P IGN+SFL+SL     +F G +P E+  L RL  
Sbjct:    59 VTCGRKHKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEH 118

Query:    63 VDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAG 122
             + ++   + G +P  T  +C  L  L    N +R  +P ++G+LT+LV L L  NNL+ G
Sbjct:   119 LYMAFNSLEGGIPA-TLSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLK-G 176

Query:   123 LLPSVIFNSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCGIVPDSICNASEV 181
              LP  + N ++++ +    N++ G +   +  L  +  L L  N   G+ P +I N S +
Sbjct:   177 KLPRSLGNLTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSAL 236

Query:   182 TILELSKNLFS-CLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKC 240
               L L  + FS  L P+   + PN I  L+   EN       L G IP    N+S + K 
Sbjct:   237 EDLFLFGSGFSGSLKPDFGNLLPN-IRELNLG-EN------DLVGAIPTTLSNISTLQKF 288

Query:   241 NLESLFGLLLGGDALE-GQIPT 261
              +     ++ GG     G++P+
Sbjct:   289 GINK--NMMTGGIYPNFGKVPS 308

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 3.0e-24, P = 3.0e-24
 Identities = 87/253 (34%), Positives = 132/253 (52%)

Query:    15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSL 74
             LS+ NL L GTIPP  GNLS L+          G +   L  L+ L ++ L    +   +
Sbjct:   109 LSM-NL-LSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVI 166

Query:    75 PDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI 134
             P +  G+   +  L+ S NK+ G IP  +GNL  L+ LYL  N L  G++P  + N  ++
Sbjct:   167 PSEL-GNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYL-TGVIPPELGNMESM 224

Query:   135 QVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
               + L  N L+G + S++  L NL  L+L++N L G++P  I N   +T L LS+N    
Sbjct:   225 TDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQN---- 280

Query:   194 LIPNTSGVFPNSIGNLST-SLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGG 252
                  +G  P+S+GNL   +L + + +   L+GGIP   GN+ +MI  +LE      L  
Sbjct:   281 ---KLTGSIPSSLGNLKNLTLLSLFQN--YLTGGIPPKLGNIESMI--DLE------LSN 327

Query:   253 DALEGQIPTCLAN 265
             + L G IP+ L N
Sbjct:   328 NKLTGSIPSSLGN 340

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 288 (106.4 bits), Expect = 4.8e-24, P = 4.8e-24
 Identities = 90/278 (32%), Positives = 134/278 (48%)

Query:     1 VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRL 60
             +GV C    + V  L+L +  + G   P I +L  L  +      F+G++P++L     L
Sbjct:    60 LGVECD-RRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLL 118

Query:    61 RIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQ 120
               +DLSS    G++PD T G    LR LS  FN + G  P+ + ++  L  +Y  GN L 
Sbjct:   119 EHIDLSSNSFTGNIPD-TLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLN 177

Query:   121 AGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNAS 179
              G +PS I N S +  + L  N  SG + SS+  +  L+ L+L  NNL G +P ++ N  
Sbjct:   178 -GSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLE 236

Query:   180 EVTILELSKN---------LFSCLIPNT--------SGVFPNSIGNLSTSLENFYASSCQ 222
              +  L++  N           SC   +T        +G  P  +GN  TSL  F A SC 
Sbjct:   237 NLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNC-TSLREFGAFSCA 295

Query:   223 LSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIP 260
             LSG IP  FG L+      L++L+   L G+   G+IP
Sbjct:   296 LSGPIPSCFGQLTK-----LDTLY---LAGNHFSGRIP 325

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 9.8e-24, P = 9.8e-24
 Identities = 95/280 (33%), Positives = 131/280 (46%)

Query:     2 GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLR 61
             GV C +    V  L+L    L G +   IG L  LV+L     SF G LP+ L     L 
Sbjct:    68 GVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLE 127

Query:    62 IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA 121
              +DLS+    G +PD   G    L  L    N + G IP  +G L ELV+L +  NNL +
Sbjct:   128 YLDLSNNDFSGEVPD-IFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNL-S 185

Query:   122 GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYL-PNLENLFLWQNNLCGIVPDSICNASE 180
             G +P ++ N S ++ + L  N L+G L +S+YL  NL  LF+  N+L G +     N  +
Sbjct:   186 GTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKK 245

Query:   181 VTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNL------ 234
             +  L+LS N F        GV P  IGN S SL +     C L+G IP   G L      
Sbjct:   246 LVSLDLSFNDFQ------GGV-PPEIGNCS-SLHSLVMVKCNLTGTIPSSMGMLRKVSVI 297

Query:   235 ---SNMIKCNL-------ESLFGLLLGGDALEGQIPTCLA 264
                 N +  N+        SL  L L  + L+G+IP  L+
Sbjct:   298 DLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALS 337

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 3.1e-23, P = 3.1e-23
 Identities = 84/257 (32%), Positives = 130/257 (50%)

Query:     1 VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRL 60
             +GVTCG    RV +L+L    L G I P IGNLSFL  L     SF  T+P ++ +L RL
Sbjct:    64 IGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRL 123

Query:    61 RIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQ 120
             + +++S  ++ G +P   S +C  L  +  S N +   +P ++G+L++L  L L  NNL 
Sbjct:   124 QYLNMSYNLLEGRIPSSLS-NCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNL- 181

Query:   121 AGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQ---NNLCGIVPDSICN 177
              G  P+ + N +++Q +    N + G +   +    L  +  +Q   N+  G  P ++ N
Sbjct:   182 TGNFPASLGNLTSLQKLDFAYNQMRGEIPDEV--ARLTQMVFFQIALNSFSGGFPPALYN 239

Query:   178 ASEVTILELSKNLFS--------CLIPNT------SGVFPNSIGN-LS--TSLENFYASS 220
              S +  L L+ N FS         L+PN       +  F  +I   L+  +SLE F  SS
Sbjct:   240 ISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISS 299

Query:   221 CQLSGGIPVGFGNLSNM 237
               LSG IP+ FG L N+
Sbjct:   300 NYLSGSIPLSFGKLRNL 316

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018948001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (1059 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.3 bits (237), Expect = 6e-22
 Identities = 95/294 (32%), Positives = 133/294 (45%), Gaps = 50/294 (17%)

Query: 14  ALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGS 73
            L L N  L G IP  IG+ S L  L        G +PN L  L  L  + L+S  + G 
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

Query: 74  LPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSN 133
           +P +  G    L+ +   +N + G IP +IG LT L  L L  NNL  G +PS + N  N
Sbjct: 204 IPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL-TGPIPSSLGNLKN 261

Query: 134 IQVIILYGNHLSGHLRSSIY-------------------------LPNLENLFLWQNNLC 168
           +Q + LY N LSG +  SI+                         L NLE L L+ NN  
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

Query: 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN-SIGNLSTSLENFYASSCQLSGGI 227
           G +P ++ +   + +L+L  N FS  IP   G   N ++ +LST+          L+G I
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN---------NLTGEI 372

Query: 228 PVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
           P G         C+  +LF L+L  ++LEG+IP  L    S     LR +RL  
Sbjct: 373 PEGL--------CSSGNLFKLILFSNSLEGEIPKSLGACRS-----LRRVRLQD 413

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 7e-22
 Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 20/244 (8%)

Query: 32  NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS 91
           N S +VS+    K+  G + + +++L  ++ ++LS+  + G +PDD       LR L+ S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 92  FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSS 151
            N   G IP+      E ++L    NN+ +G +P+ I + S+++V+ L GN L G + +S
Sbjct: 127 NNNFTGSIPRGSIPNLETLDL---SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 152 I-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLS 210
           +  L +LE L L  N L G +P  +     +  + L  N       N SG  P  IG L 
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-------NLSGEIPYEIGGL- 235

Query: 211 TSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLI 270
           TSL +       L+G IP   GNL      NL+ LF   L  + L G IP  + +L  LI
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLK-----NLQYLF---LYQNKLSGPIPPSIFSLQKLI 287

Query: 271 SLNL 274
           SL+L
Sbjct: 288 SLDL 291

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 83.4 bits (206), Expect = 6e-18
 Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 20/272 (7%)

Query: 10  RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI 69
           +++ +L L + +L G IP  +  L  L  L   + +F G +P  L  L RL+++ L S  
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
             G +P +  G    L  L  S N + G IP+ + +   L +L L  N+L+ G +P  + 
Sbjct: 344 FSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE-GEIPKSLG 401

Query: 130 NSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188
              +++ + L  N  SG L S    LP +  L +  NNL G +     +   + +L L++
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248
           N F   +P++ G         S  LEN   S  Q SG +P   G+LS +++        L
Sbjct: 462 NKFFGGLPDSFG---------SKRLENLDLSRNQFSGAVPRKLGSLSELMQ--------L 504

Query: 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280
            L  + L G+IP  L++   L+SL+L   +L+
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 80/266 (30%), Positives = 118/266 (44%), Gaps = 22/266 (8%)

Query: 11  RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGII 70
           R+  L L +    G IP ++G  + L  L     +  G +P  L     L  + L S  +
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 71  PGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFN 130
            G +P    G C  LRR+    N   G +P +   L  +  L +  NNLQ G + S  ++
Sbjct: 393 EGEIPKSL-GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ-GRINSRKWD 450

Query: 131 SSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNL 190
             ++Q++ L  N   G L  S     LENL L +N   G VP  + + SE+  L+LS+N 
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 191 FSCLIPNTSGVFPNSIGNLST--SLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248
            S  IP+           LS+   L +   S  QLSG IP  F          +  L  L
Sbjct: 511 LSGEIPD----------ELSSCKKLVSLDLSHNQLSGQIPASFS--------EMPVLSQL 552

Query: 249 LLGGDALEGQIPTCLANLTSLISLNL 274
            L  + L G+IP  L N+ SL+ +N+
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNI 578

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 4/183 (2%)

Query: 17  LPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPD 76
           L + +  G +P     L  +  L     +  G + +  W +  L+++ L+     G LPD
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 77  DTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQV 136
                   L  L  S N+  G +P+K+G+L+EL++L L  N L +G +P  + +   +  
Sbjct: 471 SFGSK--RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-SGEIPDELSSCKKLVS 527

Query: 137 IILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLI 195
           + L  N LSG + +S   +P L  L L QN L G +P ++ N   +  + +S N     +
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Query: 196 PNT 198
           P+T
Sbjct: 588 PST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 59/152 (38%), Positives = 78/152 (51%), Gaps = 20/152 (13%)

Query: 130 NSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCGIVPDSI-CNASEVTILELS 187
           NSS +  I L G ++SG + S+I+ LP ++ + L  N L G +PD I   +S +  L LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247
            N F+  IP   G  PN        LE    S+  LSG IP   G+ S+        L  
Sbjct: 127 NNNFTGSIPR--GSIPN--------LETLDLSNNMLSGEIPNDIGSFSS--------LKV 168

Query: 248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRL 279
           L LGG+ L G+IP  L NLTSL  L L S +L
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 48  GTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLT 107
           G +PN++ +L+ L+ ++LS   I G++P  + G    L  L  S+N   G IP+ +G LT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 108 ELVELYLDGNNLQAGLLPSVI 128
            L  L L+GN+L +G +P+ +
Sbjct: 491 SLRILNLNGNSL-SGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 11  RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGII 70
           R+  L L      G +P  +G+LS L+ L        G +P+EL   ++L  +DLS   +
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 71  PGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS 126
            G +P   S +  +L +L  S N++ G IP+ +GN+  LV++ +  N+L  G LPS
Sbjct: 536 SGQIPASFS-EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH-GSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 10  RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI 69
           R + +++L   ++ G IPP +G+++ L  L     SF G++P  L QL  LRI++L+   
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 70  IPGSLPDDTSGDCIMLRRLSFSF 92
           + G +P    G   +L R SF+F
Sbjct: 502 LSGRVPAALGG--RLLHRASFNF 522

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 69/279 (24%), Positives = 107/279 (38%), Gaps = 18/279 (6%)

Query: 13  TALSLPNLTLGGTI----PPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSG 68
             L LP+L L           +  L+ L SL     +     P        L+ +DLS  
Sbjct: 91  NLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN 150

Query: 69  IIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVI 128
            I  SLP     +   L+ L  SFN +   +P+ + NL+ L  L L GN +    LP  I
Sbjct: 151 KIE-SLPSP-LRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS--DLPPEI 205

Query: 129 FNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFL--WQNNLCGIVPDSICNASEVTILEL 186
              S ++ + L  N +   +     L NL+NL      NN    +P+SI N S +  L+L
Sbjct: 206 ELLSALEELDLSNNSI---IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262

Query: 187 SKNL---FSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLE 243
           S N     S L   T+    +  GN  ++      +   L   + +        ++  L 
Sbjct: 263 SNNQISSISSLGSLTNLRELDLSGNSLSNALPL-IALLLLLLELLLNLLLTLKALELKLN 321

Query: 244 SLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST 282
           S+          E   P  L+ L SL +L      L+ +
Sbjct: 322 SILLNNNILSNGETSSPEALSILESLNNLWTLDNALDES 360

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 12  VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP 71
           +  L L N  L G IP  I  L  L S+     S  G +P  L  +  L ++DLS     
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 72  GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG 104
           GS+P ++ G    LR L+ + N + G +P  +G
Sbjct: 480 GSIP-ESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 144 LSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVF 202
           L G + + I  L +L+++ L  N++ G +P S+ + + + +L+LS N F       +G  
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-------NGSI 482

Query: 203 PNSIGNLSTSLENFYASSCQLSGGIPVGFG 232
           P S+G L TSL     +   LSG +P   G
Sbjct: 483 PESLGQL-TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 200 GVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQI 259
           G  PN I  L   L++   S   + G IP   G+++        SL  L L  ++  G I
Sbjct: 432 GFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSIT--------SLEVLDLSYNSFNGSI 482

Query: 260 PTCLANLTSLISLNLRSIRL 279
           P  L  LTSL  LNL    L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 112 LYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGI 170
           L LD   L+ G +P+ I    ++Q I L GN + G++  S+  + +LE L L  N+  G 
Sbjct: 423 LGLDNQGLR-GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 171 VPDSICNASEVTILELSKNLFSCLIPNTSGVFP 203
           +P+S+   + + IL L+ N  S  +P   G   
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.98
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.64
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.53
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.3
PLN03150	623	hypothetical protein; Provisional	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
PLN03150	623	hypothetical protein; Provisional	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.06
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.79
PRK15386	426	type III secretion protein GogB; Provisional	97.77
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.72
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.7
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.6
KOG4341	483	consensus F-box protein containing LRR [General fu	96.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.41
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.85
KOG4341	483	consensus F-box protein containing LRR [General fu	95.47
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.69
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.92
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.77
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.46
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.96
KOG4308	478	consensus LRR-containing protein [Function unknown	90.48
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.57
smart00370	26	LRR Leucine-rich repeats, outliers.	88.57
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.97
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.42
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.28
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	82.82

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.98  E-value=7.2e-32  Score=255.86  Aligned_cols=275  Identities=30%  Similarity=0.467  Sum_probs=195.7

Q ss_pred             CCeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCcccc-CCCCCcEEEcCCCcccccCCCCcc
Q 039577            1 VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELW-QLQRLRIVDLSSGIIPGSLPDDTS   79 (282)
Q Consensus         1 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~   79 (282)
                      +||+|+. .+++++|+++++.+.+.++..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|.   
T Consensus        61 ~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---  136 (968)
T PLN00113         61 QGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---  136 (968)
T ss_pred             cceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---
Confidence            4899986 57999999999999998888899999999999999999888887766 889999999999988766665   


Q ss_pred             CCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCcc
Q 039577           80 GDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLE  158 (282)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~  158 (282)
                      ..+++|++|++++|.+.+..|..++.+++|++|++++|.+ .+..|..+.++++|++|++++|.+....+..+ .+.+|+
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            3467777777777777666676777777777777777766 34456666677777777777776665555555 566677


Q ss_pred             EEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCC-----------------CCCCCCcccccccccceEEeecc
Q 039577          159 NLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNT-----------------SGVFPNSIGNLSTSLENFYASSC  221 (282)
Q Consensus       159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~L~~L~l~~n  221 (282)
                      .|++++|.+++.+|..+..+++|++|++++|.+.+..|..                 .+.+|.++..++ +|++|++++|
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n  294 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDN  294 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCC
Confidence            7777766666566666666666666666666665433321                 122344455555 6777777777


Q ss_pred             cceecCCccccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          222 QLSGGIPVGFGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       222 ~~~~~~~~~~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      .+.+.+|..+.++++|+.|+                +++|+.|++++|.+.+.+|..+..+++|+.+++++|++++
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence            66666666666666666554                3456667777777766666667777777777777776654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2e-30  Score=246.12  Aligned_cols=270  Identities=33%  Similarity=0.487  Sum_probs=173.3

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+..+++|++|
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L  217 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWI  217 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEE
Confidence            45677777777777777777777777777777777777766777777777777777777777655565 56667777777


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      ++.+|.+.+.+|..+..+++|++|++++|.+ .+..|..+.++++|+.|++++|.+....+..+ .+++|+.|++++|.+
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCcee-ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            7777766655666666667777777766665 34455556666666666666666654444444 555666666666655


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCC-----------------CCCCCCcccccccccceEEeecccceecCCcc
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNT-----------------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVG  230 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~  230 (282)
                      .+.+|..+..+++|++|++++|.+.+..|..                 .+.+|..+..++ +|+.|++++|.+.+.+|.+
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChh
Confidence            5555555555555555555555554333221                 123344455555 6777777777666666665


Q ss_pred             ccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          231 FGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       231 ~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      +..+.+++.++                +++|++|++++|.+++.+|..+..+++|+.+++++|.+++
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  442 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG  442 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence            55555554443                3467777777777777777777777777777777776654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=4.7e-27  Score=199.99  Aligned_cols=256  Identities=26%  Similarity=0.341  Sum_probs=166.7

Q ss_pred             CCceEEEEcCCCcccc-CCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577            9 HRRVTALSLPNLTLGG-TIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   87 (282)
                      .+++|++.+..|++.. -+|..+..+..|.+|||+.|.+. .+|..+-+.+++-.|++++|++. .+|...+.++..|-+
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF  154 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence            4677788888887764 37778888889999999988886 68888888889999999999986 888767788888999


Q ss_pred             EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccc-ccCCCCc-CCCCccEEEeecC
Q 039577           88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLS-GHLRSSI-YLPNLENLFLWQN  165 (282)
Q Consensus        88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~-~~~~L~~L~l~~~  165 (282)
                      |++++|++. .+|+.+..+.+|++|++++|.+ ...--..+..+++|+.|+++++.-+ ..+|..+ .+.+|+.++++.|
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            999999988 6888888999999999999876 2111122334555666666655433 2344444 5666666666666


Q ss_pred             cceeeccchhhCCCCCcEEeccCcccceecCC---C------------CCCCCCcccccccccceEEeecccce-ecCCc
Q 039577          166 NLCGIVPDSICNASEVTILELSKNLFSCLIPN---T------------SGVFPNSIGNLSTSLENFYASSCQLS-GGIPV  229 (282)
Q Consensus       166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~------------~~~l~~~~~~~~~~L~~L~l~~n~~~-~~~~~  229 (282)
                      .+. .+|..+..+++|+.|++++|.++....-   |            +..+|..+.+++ .|++|.+.+|+++ .-+|.
T Consensus       233 ~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~-kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  233 NLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT-KLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             CCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH-HHHHHHhccCcccccCCcc
Confidence            665 5666666666666666666666522100   0            114444444444 4555555444433 12344


Q ss_pred             cccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccC
Q 039577          230 GFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRL  279 (282)
Q Consensus       230 ~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~  279 (282)
                      +++++.+        |+.+...+|.+. .+|+++++|+.|+.|.++.|++
T Consensus       311 GIGKL~~--------Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  311 GIGKLIQ--------LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             chhhhhh--------hHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence            4554443        444555555554 5556666666666666655553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=6.4e-25  Score=185.34  Aligned_cols=261  Identities=19%  Similarity=0.154  Sum_probs=202.0

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      |...++|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|++.+|.+. ++....++.++.|++|
T Consensus        77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrsl  154 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSL  154 (873)
T ss_pred             ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhh
Confidence            566788999999988777778889999999999998887 57776656677999999999986 6766678889999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      +++.|.+...--..|..-.++++|+++.|+++.-. ...|..+.+|..|.++.|+++..+...+ ++++|+.|++..|++
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            99999888432345666688999999999996522 2357778899999999999998887888 699999999999988


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc------
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN------  241 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~------  241 (282)
                      .-.--.++.++++|+.|.+..|.+... .+      ..+..+. ++++|++..|+++..-..|+..+..|+.|+      
T Consensus       234 rive~ltFqgL~Sl~nlklqrN~I~kL-~D------G~Fy~l~-kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI  305 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRNDISKL-DD------GAFYGLE-KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI  305 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhcCcccc-cC------cceeeec-ccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence            633245678889999999999988732 12      1344455 888889988888866667888888877776      


Q ss_pred             ----------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          242 ----------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       242 ----------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                                .++|++|++++|+++...+..|.-+..|++|+++.|+|+
T Consensus       306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence                      567888888888888555555665556666666655553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=8.7e-25  Score=184.53  Aligned_cols=222  Identities=20%  Similarity=0.156  Sum_probs=132.0

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+|+++|+|.+|-++..-...+..++.|++|||+.|.++..--+++..-.++++|++++|.++ .+..+.|..+.+|.+|
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTL  202 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheee
Confidence            567888888888776544556677788888888887776432334445577888888888876 5665567777777777


Q ss_pred             EcccCeecccCCc-CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCc
Q 039577           89 SFSFNKIRGWIPQ-KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN  166 (282)
Q Consensus        89 ~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~  166 (282)
                      .++.|+++ .+|. .|+.+++|+.|++..|++.... --.|..+++|+.|.+..|++...-...+ .+.++++|++..|+
T Consensus       203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR  280 (873)
T ss_pred             ecccCccc-ccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence            77777777 3443 4566777888888777763311 1134556666666666666653333333 45566666666665


Q ss_pred             ceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc
Q 039577          167 LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN  241 (282)
Q Consensus       167 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~  241 (282)
                      ++..-..++.++.+|+.|++++|.|....++       .+...+ +|++|+++.|+++..-+..+.-+..|+.|+
T Consensus       281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-------~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-------SWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELN  347 (873)
T ss_pred             hhhhhcccccccchhhhhccchhhhheeecc-------hhhhcc-cceeEeccccccccCChhHHHHHHHhhhhc
Confidence            5533333444555566666666655533222       222233 555555555555533333444444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=4.9e-25  Score=187.77  Aligned_cols=245  Identities=28%  Similarity=0.410  Sum_probs=188.0

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCcccc-CCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELW-QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ..++.|||++|.+. ++|..+.+-+++-+|+|++|.+. .+|..++ ++..|-.||+++|.+. .+|+ .+..+..|++|
T Consensus       103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL  178 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTL  178 (1255)
T ss_pred             ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCH-HHHHHhhhhhh
Confidence            45677777777764 46666666677777777777665 3454433 5566666666666654 5554 44444444444


Q ss_pred             EcccCeec-------------------------ccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcc
Q 039577           89 SFSFNKIR-------------------------GWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH  143 (282)
Q Consensus        89 ~l~~~~~~-------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  143 (282)
                      .+++|.+.                         ..+|.++..+.+|..+|++.|.++.  +|..+..+++|+.|++++|.
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheeccCcCc
Confidence            44444321                         2467778888999999999999866  88889999999999999999


Q ss_pred             ccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccc
Q 039577          144 LSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQL  223 (282)
Q Consensus       144 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~  223 (282)
                      ++......-.+.+|++|.++.|+++ .+|..+++++.|+.|.+.+|+++      .+.+|..++++. .|+++..++|.+
T Consensus       257 iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~------FeGiPSGIGKL~-~Levf~aanN~L  328 (1255)
T KOG0444|consen  257 ITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT------FEGIPSGIGKLI-QLEVFHAANNKL  328 (1255)
T ss_pred             eeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc------ccCCccchhhhh-hhHHHHhhcccc
Confidence            9855443337899999999999998 99999999999999999999887      347888899998 999999999998


Q ss_pred             eecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577          224 SGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       224 ~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~  278 (282)
                      . .+|.++.+|.        +|+.|.+++|++- ++|+.+.-++.|..||+..|.
T Consensus       329 E-lVPEglcRC~--------kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  329 E-LVPEGLCRCV--------KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             c-cCchhhhhhH--------HHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            7 8999999874        5667777888887 789999999999999998874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=2.2e-24  Score=174.74  Aligned_cols=38  Identities=34%  Similarity=0.462  Sum_probs=35.2

Q ss_pred             ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          242 LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       242 l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      +.+|..||+.+|.+. .+|..+++|.+|++++++||.|+
T Consensus       504 m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  504 MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            568999999999998 89999999999999999999985

>PLN03210 Resistant to P

Probab=99.82  E-value=8.6e-19  Score=168.05  Aligned_cols=249  Identities=22%  Similarity=0.249  Sum_probs=153.8

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++.++.|++.++.+ ..+|..+ ...+|+.|++.++.+. .++..+..+++|+.++++++.....+|.  +..+++|++|
T Consensus       588 p~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L  662 (1153)
T PLN03210        588 PPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETL  662 (1153)
T ss_pred             CcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEE
Confidence            45577777776655 3455544 4567777787777765 4566667777888888877654345553  5667778888


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC  168 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (282)
                      ++.+|.....+|..+..+++|+.|++++|.. ...+|..+ ++++|+.|++++|......+..  ..+|+.|++++|.+.
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~-L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCEN-LEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE  738 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCCC-cCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc
Confidence            8877654445677777777788888877543 23345433 5667777777766543333222  345566666665554


Q ss_pred             eeccchh------------------------------hCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEe
Q 039577          169 GIVPDSI------------------------------CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYA  218 (282)
Q Consensus       169 ~~~~~~l------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l  218 (282)
                       .+|..+                              ..+++|+.|++++|...       ..+|.+++.++ +|+.|++
T Consensus       739 -~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l-------~~lP~si~~L~-~L~~L~L  809 (1153)
T PLN03210        739 -EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL-------VELPSSIQNLH-KLEHLEI  809 (1153)
T ss_pred             -cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc-------cccChhhhCCC-CCCEEEC
Confidence             444322                              01234444444444322       23555666666 7777777


Q ss_pred             ecccceecCCccccCCccCccccc-------------cccceeeccCCeeeeecchhhhccCCCceeeccCc
Q 039577          219 SSCQLSGGIPVGFGNLSNMIKCNL-------------ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSI  277 (282)
Q Consensus       219 ~~n~~~~~~~~~~~~l~~l~~l~l-------------~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n  277 (282)
                      ++|...+.+|..+ .+++|+.|++             .+++.|++++|.++ .+|.++..+++|++|++++|
T Consensus       810 s~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        810 ENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence            7764433555543 4455555542             35778888888887 67888888888888888874

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=1.8e-23  Score=169.49  Aligned_cols=243  Identities=26%  Similarity=0.362  Sum_probs=157.2

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF   90 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   90 (282)
                      .++.+.+++|.+.. +-..+.++.-|.++++.+|.+. ++|++++.+..++.++.++|++. .+|. .+..+.+++.+++
T Consensus        46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhhhc
Confidence            34556666666643 3334566777777777777766 56667777777777777777764 6666 5566677777777


Q ss_pred             ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceee
Q 039577           91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI  170 (282)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  170 (282)
                      +.|.+. .++++++.+..++.++..+|.+..  +|..++++.++..+.+.+|++...++..+.+..|++++...|.+. .
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-c
Confidence            777766 466677777777777777777644  666677777777777777777655555556677777777766664 7


Q ss_pred             ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcccc-CCccCccccccccceee
Q 039577          171 VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFG-NLSNMIKCNLESLFGLL  249 (282)
Q Consensus       171 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~l~~l~l~~l~~L~  249 (282)
                      +|+.++.+.+|..|+++.|++.        ++| .|.... .|++|++..|.+. .+|.... +        ++++..||
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~--------~lP-ef~gcs-~L~Elh~g~N~i~-~lpae~~~~--------L~~l~vLD  258 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR--------FLP-EFPGCS-LLKELHVGENQIE-MLPAEHLKH--------LNSLLVLD  258 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc--------cCC-CCCccH-HHHHHHhcccHHH-hhHHHHhcc--------cccceeee
Confidence            7777777777777777777765        333 344444 5666666666554 4444332 2        25556666


Q ss_pred             ccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          250 LGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       250 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      +++|.+. ++|..++-+.+|..+|+|+|.|++
T Consensus       259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  259 LRDNKLK-EVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             ccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence            6666666 566666666666666666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=6.5e-19  Score=159.62  Aligned_cols=225  Identities=23%  Similarity=0.362  Sum_probs=117.5

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF   90 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   90 (282)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.+. .+|..+.  .+|+.|++++|.+. .+|. .+  ..+|+.|++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~-~l--~s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPE-RL--PSALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCCh-hH--hCCCCEEEC
Confidence            4444444444443 2333222  34555555554443 2333221  24555555555543 4443 11  124555555


Q ss_pred             ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceee
Q 039577           91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI  170 (282)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  170 (282)
                      ++|.+. .+|..+.  ++|+.|++++|.++.  +|..+  ..+|+.|++++|.+...+ ..+ .++|+.|++++|.++ .
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N~Lt~LP-~~l-~~sL~~L~Ls~N~Lt-~  339 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSNSLTALP-ETL-PPGLKTLEAGENALT-S  339 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCCccccCC-ccc-cccceeccccCCccc-c
Confidence            555554 2443332  345555555555532  33222  134555555555554322 111 345666666666665 4


Q ss_pred             ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeec
Q 039577          171 VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLL  250 (282)
Q Consensus       171 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l  250 (282)
                      +|..+  .++|+.|++++|.++        .+|..+   +..|++|++++|.++ .+|..+.          .+|+.|++
T Consensus       340 LP~~l--~~sL~~L~Ls~N~L~--------~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~----------~sL~~LdL  395 (754)
T PRK15370        340 LPASL--PPELQVLDVSKNQIT--------VLPETL---PPTITTLDVSRNALT-NLPENLP----------AALQIMQA  395 (754)
T ss_pred             CChhh--cCcccEEECCCCCCC--------cCChhh---cCCcCEEECCCCcCC-CCCHhHH----------HHHHHHhh
Confidence            55443  256677777777665        233222   126777777777766 4554432          35778888


Q ss_pred             cCCeeeeecchhhh----ccCCCceeeccCccCC
Q 039577          251 GGDALEGQIPTCLA----NLTSLISLNLRSIRLN  280 (282)
Q Consensus       251 ~~n~~~~~~~~~~~----~l~~L~~l~l~~n~~~  280 (282)
                      ++|.++ .+|..+.    .++.+..+++.+|.|+
T Consensus       396 s~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        396 SRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             ccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            899887 5565444    4588899999999886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.78  E-value=2.7e-18  Score=155.05  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=34.5

Q ss_pred             cccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          243 ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       243 ~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      .+|+.|++++|.++ .+|..+..+++|+.+++++|.|+|
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence            45788999999998 789999999999999999999987

>PLN03210 Resistant to P

Probab=99.76  E-value=2.3e-17  Score=158.39  Aligned_cols=249  Identities=20%  Similarity=0.214  Sum_probs=143.2

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      +.++++|++.++.+. .++..+..+++|+.++++++.....+| .+..+++|+.|++.+|.....+|. .+..+++|+.|
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L  686 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDL  686 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccCCCCEE
Confidence            457777777777664 455566677777777777665554555 356677777777777654446665 56677777777


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCC------------------
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRS------------------  150 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------  150 (282)
                      ++.+|..-..+|..+ .+++|+.|++++|.. ...+|.   ...+|+.|++.++.+...+..                  
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~-L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSR-LKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK  761 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCC-cccccc---ccCCcCeeecCCCccccccccccccccccccccccchhh
Confidence            777654333455443 456666666666543 111221   123444444444443321110                  


Q ss_pred             -----------Cc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCC----------------CCC
Q 039577          151 -----------SI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTS----------------GVF  202 (282)
Q Consensus       151 -----------~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----------------~~l  202 (282)
                                 .. .+++|+.|++++|.....+|..++.+++|+.|++++|..-..+|...                ..+
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence                       00 23567777777776555677777777788888887775433333211                011


Q ss_pred             CCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577          203 PNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       203 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~  278 (282)
                      |    ..+.+|++|++++|.+. .+|.++..+        ++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus       842 p----~~~~nL~~L~Ls~n~i~-~iP~si~~l--------~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        842 P----DISTNISDLNLSRTGIE-EVPWWIEKF--------SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             c----ccccccCEeECCCCCCc-cChHHHhcC--------CCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            1    11124555555555554 445544443        567777777643333567777778888888887763

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=1e-17  Score=151.88  Aligned_cols=226  Identities=22%  Similarity=0.335  Sum_probs=176.0

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ....+.|+++++.++ .+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|++++|.+. .+|. .+  ..+|+.|
T Consensus       177 ~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l--~~~L~~L  246 (754)
T PRK15370        177 KNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPA-TL--PDTIQEM  246 (754)
T ss_pred             ccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCCh-hh--hccccEE
Confidence            356789999998886 4676554  58999999999988 5776554  69999999999987 7776 22  3589999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC  168 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (282)
                      ++++|.+. .+|..+.  .+|+.|+++.|.++.  +|..+.  .+|+.|++++|.++..+ ..+ .++|+.|++++|.++
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt~LP-~~l-p~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKISC--LPENLP--EELRYLSVYDNSIRTLP-AHL-PSGITHLNVQSNSLT  317 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccCc--cccccC--CCCcEEECCCCccccCc-ccc-hhhHHHHHhcCCccc
Confidence            99999988 5776653  579999999999853  666443  58999999999987543 333 357899999999987


Q ss_pred             eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577          169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL  248 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L  248 (282)
                       .+|..+  .++|++|++++|.++        .+|..+.   .+|+.|++++|.+. .+|..+.          ++|+.|
T Consensus       318 -~LP~~l--~~sL~~L~Ls~N~Lt--------~LP~~l~---~sL~~L~Ls~N~L~-~LP~~lp----------~~L~~L  372 (754)
T PRK15370        318 -ALPETL--PPGLKTLEAGENALT--------SLPASLP---PELQVLDVSKNQIT-VLPETLP----------PTITTL  372 (754)
T ss_pred             -cCCccc--cccceeccccCCccc--------cCChhhc---CcccEEECCCCCCC-cCChhhc----------CCcCEE
Confidence             667544  368999999999887        3443332   38999999999987 5665442          578999


Q ss_pred             eccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      ++++|.++ .+|..+.  ++|+.|++++|+|++
T Consensus       373 dLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~  402 (754)
T PRK15370        373 DVSRNALT-NLPENLP--AALQIMQASRNNLVR  402 (754)
T ss_pred             ECCCCcCC-CCCHhHH--HHHHHHhhccCCccc
Confidence            99999998 6777665  379999999999874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.74  E-value=7e-20  Score=162.22  Aligned_cols=252  Identities=23%  Similarity=0.233  Sum_probs=177.4

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|...+|.++...+.  +.-.+|++++++.+++. .+|.-+..|.+|+.+...+|.+. .+|. -+....+|+.|
T Consensus       218 g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~~~L~~l  292 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRITSLVSL  292 (1081)
T ss_pred             CcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhhhhHHHH
Confidence            35666777777766632221  23357888888888887 46777778888888888888884 6666 55667788888


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccC-CC-CCcEEEecCccccccCCCCc-CCCCccEEEeecC
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFN-SS-NIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQN  165 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~-~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~  165 (282)
                      .+..|.++ .+|+...+++.|++|++..|.+..  +|..+.. .. .+..|+.+.+++...+...- ..+.|+.|++.+|
T Consensus       293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~--lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN  369 (1081)
T KOG0618|consen  293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS--LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN  369 (1081)
T ss_pred             Hhhhhhhh-hCCCcccccceeeeeeehhccccc--cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence            88888888 577777788889999998888743  5543222 22 25666666666654432222 4667888888888


Q ss_pred             cceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCc-ccccccccceEEeecccceecCCccccCCccCcccc---
Q 039577          166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNS-IGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN---  241 (282)
Q Consensus       166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~---  241 (282)
                      .++...-..+.++.+|+.|++++|.+.        .||.. +.++. .|++|+++||+++ .+|..+..++.|+.|.   
T Consensus       370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~--------~fpas~~~kle-~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  370 HLTDSCFPVLVNFKHLKVLHLSYNRLN--------SFPASKLRKLE-ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             cccccchhhhccccceeeeeecccccc--------cCCHHHHhchH-HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence            887655556778888888888888876        55543 44566 8888888888887 7777788877777775   


Q ss_pred             -----------ccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577          242 -----------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       242 -----------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~  278 (282)
                                 ++.|+.+|++.|+++...-...-..|+|++||++||.
T Consensus       440 N~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  440 NQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             CceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence                       5678899999998873322222223899999999985

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.7e-19  Score=150.96  Aligned_cols=15  Identities=27%  Similarity=0.271  Sum_probs=7.2

Q ss_pred             CCCCCcEEEcCCCcc
Q 039577           56 QLQRLRIVDLSSGII   70 (282)
Q Consensus        56 ~l~~L~~L~l~~~~~   70 (282)
                      .+++|+.|++++|.+
T Consensus        79 ~~~~L~~L~l~~~~~   93 (319)
T cd00116          79 KGCGLQELDLSDNAL   93 (319)
T ss_pred             hcCceeEEEccCCCC
Confidence            344555555554444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=4.8e-19  Score=128.32  Aligned_cols=164  Identities=27%  Similarity=0.455  Sum_probs=83.0

Q ss_pred             CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceE
Q 039577           32 NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE  111 (282)
Q Consensus        32 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  111 (282)
                      ++.+.+.|.++.|+++ .+|+.+..+.+|+.|++.+|+++ ++|. .++.++.|+.|++..|++. .+|.+|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~-~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcCh-hhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            3444445555555554 34444555555555555555554 4444 4455555555555555544 34555555555555


Q ss_pred             EEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccc
Q 039577          112 LYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF  191 (282)
Q Consensus       112 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  191 (282)
                      ||+++|.+....+|..|..+                       ..|+.|++++|.+. -+|..++++.+|+.|.+++|++
T Consensus       107 ldltynnl~e~~lpgnff~m-----------------------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYM-----------------------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hhccccccccccCCcchhHH-----------------------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            55555555333444444444                       44455555555543 4455555555555555555544


Q ss_pred             ceecCCCCCCCCCcccccccccceEEeecccceecCCccccC
Q 039577          192 SCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGN  233 (282)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  233 (282)
                      -        ++|..++.+. .|++|.+.+|+++ .+|+.++.
T Consensus       163 l--------~lpkeig~lt-~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  163 L--------SLPKEIGDLT-RLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             h--------hCcHHHHHHH-HHHHHhcccceee-ecChhhhh
Confidence            3        4444555554 5555555555554 44444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=7.9e-19  Score=127.22  Aligned_cols=163  Identities=26%  Similarity=0.412  Sum_probs=137.9

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ..+++.|.+++|.++ .+|+.+..+.+|+.|++.+|.+. .+|.++..+++|+.|+++.|.+. .+|. .|+.+|.|++|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccCCCchhhhh
Confidence            357888999999886 57888999999999999999887 68999999999999999999985 6777 89999999999


Q ss_pred             EcccCeec-ccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcc
Q 039577           89 SFSFNKIR-GWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  167 (282)
                      ++.+|.+. ..+|..|..+..|+-|++++|.+..  +|..++.+++|+.|.+..|.+...+.+...+..|++|++.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            99998876 3578888889999999999999844  88889999999999999888874443333788888999999888


Q ss_pred             eeeccchhhCC
Q 039577          168 CGIVPDSICNA  178 (282)
Q Consensus       168 ~~~~~~~l~~~  178 (282)
                      + .+|..++.+
T Consensus       186 ~-vlppel~~l  195 (264)
T KOG0617|consen  186 T-VLPPELANL  195 (264)
T ss_pred             e-ecChhhhhh
Confidence            7 777665443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.67  E-value=1.3e-18  Score=154.21  Aligned_cols=243  Identities=25%  Similarity=0.323  Sum_probs=182.7

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      +..++.++++.|.+. .+|.-+..+.+|+.++...|.+. .+|..+....+|+.+....|.+. .+|. ....+.+|++|
T Consensus       240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~-~le~~~sL~tL  315 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP-FLEGLKSLRTL  315 (1081)
T ss_pred             cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC-cccccceeeee
Confidence            678999999999886 46777788999999999998885 56666666777777777777764 5555 44556677777


Q ss_pred             EcccCeecccCCcC------------------------C--cCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCc
Q 039577           89 SFSFNKIRGWIPQK------------------------I--GNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGN  142 (282)
Q Consensus        89 ~l~~~~~~~~~~~~------------------------~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  142 (282)
                      ++..|.+.. +|..                        +  ..++.|+.|++.+|.++...+| .+.++.+|+.|++++|
T Consensus       316 dL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  316 DLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             eehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeeccc
Confidence            776665542 2221                        1  1246789999999998554454 5788999999999999


Q ss_pred             cccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecc
Q 039577          143 HLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC  221 (282)
Q Consensus       143 ~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n  221 (282)
                      .+...+...+ ++..|++|++++|.++ .+|..+..+..|++|...+|.+.        .+| .+.+++ .|+.+|++.|
T Consensus       394 rL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~--------~fP-e~~~l~-qL~~lDlS~N  462 (1081)
T KOG0618|consen  394 RLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL--------SFP-ELAQLP-QLKVLDLSCN  462 (1081)
T ss_pred             ccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee--------ech-hhhhcC-cceEEecccc
Confidence            9886665555 8999999999999998 89999999999999999999887        667 677788 9999999999


Q ss_pred             cceec-CCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCc
Q 039577          222 QLSGG-IPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSI  277 (282)
Q Consensus       222 ~~~~~-~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n  277 (282)
                      +++-. +|.....         ++|+.||+++|.=.-..-+.|..+.++...+++-+
T Consensus       463 ~L~~~~l~~~~p~---------p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  463 NLSEVTLPEALPS---------PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhhhhCCC---------cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            88732 2222211         68899999998633233467777888887777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=2.2e-18  Score=144.20  Aligned_cols=259  Identities=21%  Similarity=0.199  Sum_probs=178.8

Q ss_pred             EEEcCCCcccc-CCCccccCCCCccEEEecCCcceee----CCccccCCCCCcEEEcCCCcccc------cCCCCccCCC
Q 039577           14 ALSLPNLTLGG-TIPPHIGNLSFLVSLTSVAKSFYGT----LPNELWQLQRLRIVDLSSGIIPG------SLPDDTSGDC   82 (282)
Q Consensus        14 ~l~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~~~~l   82 (282)
                      +|+|.++.+.+ .....+..+..|+.++++++.+...    ++..+...++++.++++++.+.+      .++. .+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhc
Confidence            46787877763 4455566778899999999988532    45556678889999999987641      1112 45668


Q ss_pred             CCccEEEcccCeecccCCcCCcCC---CCceEEEecCCCCCCCCC---CccccCC-CCCcEEEecCccccccCC----CC
Q 039577           83 IMLRRLSFSFNKIRGWIPQKIGNL---TELVELYLDGNNLQAGLL---PSVIFNS-SNIQVIILYGNHLSGHLR----SS  151 (282)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~---~~~~~~~-~~L~~L~l~~~~~~~~~~----~~  151 (282)
                      ++|+.|++++|.+....+..+..+   ++|++|++++|.+.....   ...+... ++|+.|++++|.++....    ..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            899999999998764344444444   449999999998732111   1234455 889999999999873222    12


Q ss_pred             c-CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceec
Q 039577          152 I-YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGG  226 (282)
Q Consensus       152 ~-~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~  226 (282)
                      + .+.+|++|++++|.+++.    ++..+...++|++|++++|.+++...   ..++..+..++ +|++|++++|.+++.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~---~~l~~~~~~~~-~L~~L~ls~n~l~~~  236 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA---SALAETLASLK-SLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH---HHHHHHhcccC-CCCEEecCCCcCchH
Confidence            2 467899999999988732    33345566799999999998864322   23444555666 999999999988743


Q ss_pred             CCccccC-CccCccccccccceeeccCCeeeee----cchhhhccCCCceeeccCccCCC
Q 039577          227 IPVGFGN-LSNMIKCNLESLFGLLLGGDALEGQ----IPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       227 ~~~~~~~-l~~l~~l~l~~l~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      ....+.. +..    ..+.|++|++++|.+++.    +...+..+++|+++++++|.++.
T Consensus       237 ~~~~l~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         237 GAAALASALLS----PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHHHHHHhc----cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            2222211 110    126789999999988732    34456677899999999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.65  E-value=1e-18  Score=141.71  Aligned_cols=253  Identities=20%  Similarity=0.188  Sum_probs=161.3

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCC-CcccccCCCCccCCCCCccE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSS-GIIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~   87 (282)
                      |+..++|.|.-|+++..-+.+|+.+++|+.|||+.|.++..-|..|..++++..|.+.+ |+|+ .+|.+.|.++..++-
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            88889999999998765566888999999999999999877788888888888877776 7886 888878888888888


Q ss_pred             EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCc-cccCCCCCcEEEecCccccc-cCCCCc------------C
Q 039577           88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS-VIFNSSNIQVIILYGNHLSG-HLRSSI------------Y  153 (282)
Q Consensus        88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~------------~  153 (282)
                      |.+..|.+.-.....+..++++..|.+-+|.+..  ++. .+..+..++.+++..|.+.. .-..|.            .
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~--i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS--ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhh--hccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            8887777775445567778888888888877633  443 45566667777666554210 000000            0


Q ss_pred             CCCccEEEeecCcc-------------------------eeecc-chhhCCCCCcEEeccCcccceecCCCCCCCCCccc
Q 039577          154 LPNLENLFLWQNNL-------------------------CGIVP-DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIG  207 (282)
Q Consensus       154 ~~~L~~L~l~~~~~-------------------------~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  207 (282)
                      ..-.....+.+.++                         ....| ..+..+++|+++++++|++++.-+       .++.
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-------~aFe  295 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-------GAFE  295 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-------hhhc
Confidence            00000000111111                         00111 123445555555555555543221       1233


Q ss_pred             ccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          208 NLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       208 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      ... .+++|.+..|++...-...|..        +.+|+.|++.+|+++..-|..|..+.+|.+|++-.|.+.
T Consensus       296 ~~a-~l~eL~L~~N~l~~v~~~~f~~--------ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  296 GAA-ELQELYLTRNKLEFVSSGMFQG--------LSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chh-hhhhhhcCcchHHHHHHHhhhc--------cccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            333 5555555555544211122222        478899999999999777888999999999999888763

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.64  E-value=3.9e-15  Score=134.79  Aligned_cols=223  Identities=23%  Similarity=0.340  Sum_probs=154.3

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      ..-..|+++++.++ ++|..+.  ++|+.|++.+|.++ .+|.   ..++|+.|++++|.++ .+|.    ..++|++|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceee
Confidence            34567899999887 6888775  58999999999987 4664   3589999999999997 6765    246899999


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCccee
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCG  169 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  169 (282)
                      +.+|.+. .+|..   ...|+.|++++|.++.  +|.   .+++|+.|++++|.+...+ ..  ..+|+.|++++|.++ 
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~--LP~---~p~~L~~LdLS~N~L~~Lp-~l--p~~L~~L~Ls~N~L~-  335 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDNQLASLP-AL--PSELCKLWAYNNQLT-  335 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCcccc--ccc---cccccceeECCCCccccCC-CC--cccccccccccCccc-
Confidence            9999887 45542   3678899999998854  554   2478999999999987543 22  456888999999987 


Q ss_pred             eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc--------
Q 039577          170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN--------  241 (282)
Q Consensus       170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~--------  241 (282)
                      .+|..   ..+|++|++++|.++.        +|.    .+.+|+.|++++|.+. .+|....   +|+.|+        
T Consensus       336 ~LP~l---p~~Lq~LdLS~N~Ls~--------LP~----lp~~L~~L~Ls~N~L~-~LP~l~~---~L~~LdLs~N~Lt~  396 (788)
T PRK15387        336 SLPTL---PSGLQELSVSDNQLAS--------LPT----LPSELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLTS  396 (788)
T ss_pred             ccccc---ccccceEecCCCccCC--------CCC----CCcccceehhhccccc-cCccccc---ccceEEecCCcccC
Confidence            66642   3589999999999873        221    1124555555555554 3333211   111111        


Q ss_pred             ----ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          242 ----LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       242 ----l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                          .++|+.|++++|.++ .+|..+   .+|+.|++++|.|+
T Consensus       397 LP~l~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt  435 (788)
T PRK15387        397 LPVLPSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT  435 (788)
T ss_pred             CCCcccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc
Confidence                145667777777776 355432   35667777777765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.53  E-value=3.5e-16  Score=127.10  Aligned_cols=181  Identities=22%  Similarity=0.275  Sum_probs=115.1

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecC-CcceeeCC-------------------------ccccCCCCCcE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVA-KSFYGTLP-------------------------NELWQLQRLRI   62 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-------------------------~~l~~l~~L~~   62 (282)
                      -+++|+|||+.|+++...|.+|.+++.|..|-+++ |+++. +|                         ..+..+++|..
T Consensus        90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l  168 (498)
T KOG4237|consen   90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL  168 (498)
T ss_pred             hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence            57899999999999988899999999988887776 77653 22                         33445677777


Q ss_pred             EEcCCCcccccCCCCccCCCCCccEEEcccCeecc---------------------------------------------
Q 039577           63 VDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRG---------------------------------------------   97 (282)
Q Consensus        63 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------------------------------------   97 (282)
                      |.+.+|.+. .++...+..+..++++++..|.+..                                             
T Consensus       169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~  247 (498)
T KOG4237|consen  169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS  247 (498)
T ss_pred             hcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence            788887775 5665566666677766655443110                                             


Q ss_pred             ----------------cCCc-CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccE
Q 039577           98 ----------------WIPQ-KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLEN  159 (282)
Q Consensus        98 ----------------~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~  159 (282)
                                      ..|. -|+.+++|++|++++|.+ ...-+.+|.....++.|.+..|.+..+....+ .+..|+.
T Consensus       248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i-~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t  326 (498)
T KOG4237|consen  248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI-TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT  326 (498)
T ss_pred             HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc-chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence                            0000 133456666666666666 32333455556666666666666654443334 5666777


Q ss_pred             EEeecCcceeeccchhhCCCCCcEEeccCcccc
Q 039577          160 LFLWQNNLCGIVPDSICNASEVTILELSKNLFS  192 (282)
Q Consensus       160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  192 (282)
                      |++++|+++-..|..+..+.+|.+|.+-.|.+.
T Consensus       327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             eeecCCeeEEEecccccccceeeeeehccCccc
Confidence            777777776444555555666666666655543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.30  E-value=4.1e-14  Score=113.48  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=46.4

Q ss_pred             CCceEEEEcCCCccccC----CCccccCCCCccEEEecCCc---ceeeCC-------ccccCCCCCcEEEcCCCcccccC
Q 039577            9 HRRVTALSLPNLTLGGT----IPPHIGNLSFLVSLTSVAKS---FYGTLP-------NELWQLQRLRIVDLSSGIIPGSL   74 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~---~~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~   74 (282)
                      ..+++.|+++||.+...    +...+.+.+.|+..++++-.   ....+|       +.+..+++|+.+++++|-+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            35667777777776432    33345556667776666421   111222       22334566777777776653222


Q ss_pred             CC---CccCCCCCccEEEcccCeec
Q 039577           75 PD---DTSGDCIMLRRLSFSFNKIR   96 (282)
Q Consensus        75 ~~---~~~~~l~~L~~L~l~~~~~~   96 (282)
                      +.   ..+..+..|++|.+.+|.+.
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCC
Confidence            21   12344566666666666544

>PLN03150 hypothetical protein; Provisional

Probab=99.25  E-value=1.9e-11  Score=110.49  Aligned_cols=118  Identities=28%  Similarity=0.447  Sum_probs=97.8

Q ss_pred             CCeeecCC----CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCC
Q 039577            1 VGVTCGVP----HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPD   76 (282)
Q Consensus         1 ~~~~~~~~----~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~   76 (282)
                      .||.|...    ...++.|+|.++.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|.
T Consensus       405 ~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~  484 (623)
T PLN03150        405 SGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE  484 (623)
T ss_pred             ccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence            37888532    12588999999999999999999999999999999999888998889999999999999999888887


Q ss_pred             CccCCCCCccEEEcccCeecccCCcCCcCC-CCceEEEecCCCC
Q 039577           77 DTSGDCIMLRRLSFSFNKIRGWIPQKIGNL-TELVELYLDGNNL  119 (282)
Q Consensus        77 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~  119 (282)
                       .++.+++|++|++++|.+.+.+|..+... .++..+++.+|..
T Consensus       485 -~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        485 -SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             -HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence             78889999999999999888888776653 4566777777653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=7.9e-12  Score=98.95  Aligned_cols=222  Identities=19%  Similarity=0.209  Sum_probs=139.4

Q ss_pred             CCCccEEEecCCcc-------ee-eCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCc
Q 039577           33 LSFLVSLTSVAKSF-------YG-TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG  104 (282)
Q Consensus        33 l~~L~~L~l~~~~~-------~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  104 (282)
                      +.+|.+|..+...-       .. -+|=.+.-+++|+.+.++.+.-. .+.. ....-|.|+++.+++..+.. . +.+-
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~-~~~~kptl~t~~v~~s~~~~-~-~~l~  256 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVD-IELLKPTLQTICVHNTTIQD-V-PSLL  256 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heec-eeecCchhheeeeecccccc-c-cccc
Confidence            56777777664221       11 12222334578888888877643 3332 22344678888777655442 1 2222


Q ss_pred             CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcE
Q 039577          105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTI  183 (282)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  183 (282)
                      ....+............+..-..+..+..|+.++++.|.++. +.++. -.++++.|+++.|.+. .+.. +..+++|..
T Consensus       257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~  333 (490)
T KOG1259|consen  257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQL  333 (490)
T ss_pred             chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceE
Confidence            233333222222222122222234445778999999998873 34445 5789999999999887 4333 778899999


Q ss_pred             EeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecc--h
Q 039577          184 LELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIP--T  261 (282)
Q Consensus       184 L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~--~  261 (282)
                      |++++|.++        .+-.|-.++. ++++|.+++|.+.     .+..+.+|     .+|+.||+++|++. ++.  .
T Consensus       334 LDLS~N~Ls--------~~~Gwh~KLG-NIKtL~La~N~iE-----~LSGL~KL-----YSLvnLDl~~N~Ie-~ldeV~  393 (490)
T KOG1259|consen  334 LDLSGNLLA--------ECVGWHLKLG-NIKTLKLAQNKIE-----TLSGLRKL-----YSLVNLDLSSNQIE-ELDEVN  393 (490)
T ss_pred             eecccchhH--------hhhhhHhhhc-CEeeeehhhhhHh-----hhhhhHhh-----hhheeccccccchh-hHHHhc
Confidence            999999887        4444555666 8899999988775     12233322     67888999999887 322  4


Q ss_pred             hhhccCCCceeeccCccCCC
Q 039577          262 CLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       262 ~~~~l~~L~~l~l~~n~~~~  281 (282)
                      .++++|.|+.+.+.+|.+++
T Consensus       394 ~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  394 HIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccccccHHHHHhhcCCCccc
Confidence            68889999999999998876

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=5.3e-13  Score=113.57  Aligned_cols=177  Identities=27%  Similarity=0.375  Sum_probs=112.9

Q ss_pred             cEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEec
Q 039577           61 RIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILY  140 (282)
Q Consensus        61 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  140 (282)
                      ...|++.|.+. .+|. .++.+..|+.+.+..|.+. .+|..+..+..|.+++++.|.+..  +|..+..++ |+.|.++
T Consensus        78 ~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             hhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEe
Confidence            44666677664 6665 4556666777777666655 466667777777777777777633  555544433 6777777


Q ss_pred             CccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeec
Q 039577          141 GNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASS  220 (282)
Q Consensus       141 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~  220 (282)
                      +|+++..+.+......|..|+.+.|.+. .+|.-++++.+|+.|.+..|.+.        .+|..+..+|  |.+||+++
T Consensus       152 NNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~--------~lp~El~~Lp--Li~lDfSc  220 (722)
T KOG0532|consen  152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE--------DLPEELCSLP--LIRLDFSC  220 (722)
T ss_pred             cCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh--------hCCHHHhCCc--eeeeeccc
Confidence            7777644333335666777777777776 66666777777777777777665        4454555555  77777777


Q ss_pred             ccceecCCccccCCccCccccccccceeeccCCeeeeecchhhh
Q 039577          221 CQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA  264 (282)
Q Consensus       221 n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~  264 (282)
                      |++. .+|-.|.++        .+|++|-|.+|.++ .-|..++
T Consensus       221 Nkis-~iPv~fr~m--------~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKM--------RHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             Ccee-ecchhhhhh--------hhheeeeeccCCCC-CChHHHH
Confidence            7776 667666665        45566666667766 3344444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2.3e-12  Score=106.40  Aligned_cols=159  Identities=20%  Similarity=0.163  Sum_probs=61.7

Q ss_pred             CCCccEEEecCCcceeeCC-ccccCCCCCcEEEcCCCcccccCC-CCccCCCCCccEEEcccCeecccCCc-CCcCCCCc
Q 039577           33 LSFLVSLTSVAKSFYGTLP-NELWQLQRLRIVDLSSGIIPGSLP-DDTSGDCIMLRRLSFSFNKIRGWIPQ-KIGNLTEL  109 (282)
Q Consensus        33 l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L  109 (282)
                      +.+|+.+.|.++....... +....|++++.||+++|-+..-.+ ...+..+|+|+.|+++.|++...... .-..++.|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            4445555554444432110 123345555555555544321000 00223455555555555544311111 01123445


Q ss_pred             eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeecc--chhhCCCCCcEEec
Q 039577          110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVP--DSICNASEVTILEL  186 (282)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l  186 (282)
                      +.|.++.|.+.+..+-..+..+++|+.|.+.+|.......... -++.|++|++++|++. .++  ..++.++.|..|++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhc
Confidence            5555555544322222222334455555554442110100111 2344555555554443 222  22334445555555


Q ss_pred             cCcccc
Q 039577          187 SKNLFS  192 (282)
Q Consensus       187 ~~~~~~  192 (282)
                      +.+.+.
T Consensus       279 s~tgi~  284 (505)
T KOG3207|consen  279 SSTGIA  284 (505)
T ss_pred             cccCcc
Confidence            554444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=6.7e-13  Score=106.62  Aligned_cols=245  Identities=22%  Similarity=0.315  Sum_probs=170.6

Q ss_pred             ccccCCCCccEEEecCCcceee----CCccccCCCCCcEEEcCCCccccc----CCCC------ccCCCCCccEEEcccC
Q 039577           28 PHIGNLSFLVSLTSVAKSFYGT----LPNELWQLQRLRIVDLSSGIIPGS----LPDD------TSGDCIMLRRLSFSFN   93 (282)
Q Consensus        28 ~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~------~~~~l~~L~~L~l~~~   93 (282)
                      +.+..+..++.+++++|.+...    +.+.+.+.++|+..+++.-.. |.    +|..      .+..+++|+++++++|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ft-GR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFT-GRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhc-CCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            3455678899999999998643    334455678999999987432 22    2221      3456789999999999


Q ss_pred             eecccCCcC----CcCCCCceEEEecCCCCCCCC------------CCccccCCCCCcEEEecCccccccCCCCc-----
Q 039577           94 KIRGWIPQK----IGNLTELVELYLDGNNLQAGL------------LPSVIFNSSNIQVIILYGNHLSGHLRSSI-----  152 (282)
Q Consensus        94 ~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----  152 (282)
                      .+....+..    +.....|++|++.+|.+....            ....+...++|+.+....|.+.......+     
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            988554443    345688999999999872210            11123445789999999988764433222     


Q ss_pred             CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577          153 YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP  228 (282)
Q Consensus       153 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~  228 (282)
                      ..+.|+.+.++.|.+...    +...+.++++|+.|++++|.++..   ++..+...+..++ +|++|++++|.+.....
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e---gs~~LakaL~s~~-~L~El~l~dcll~~~Ga  258 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE---GSVALAKALSSWP-HLRELNLGDCLLENEGA  258 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH---HHHHHHHHhcccc-hheeecccccccccccH
Confidence            467899999999987521    234567899999999999988743   2234555677788 99999999998874444


Q ss_pred             ccccCCccCccccccccceeeccCCeeeee----cchhhhccCCCceeeccCccCC
Q 039577          229 VGFGNLSNMIKCNLESLFGLLLGGDALEGQ----IPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       229 ~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      ..+..  .++.. .++|+.|.+.+|.++-.    +..+....|.|.+|++++|++.
T Consensus       259 ~a~~~--al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  259 IAFVD--ALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHH--HHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            33321  11111 47899999999998743    2234556799999999999984

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=4.6e-11  Score=103.03  Aligned_cols=177  Identities=33%  Similarity=0.399  Sum_probs=101.9

Q ss_pred             cCCCCccEEEecCCcceeeCCccccCCC-CCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577           31 GNLSFLVSLTSVAKSFYGTLPNELWQLQ-RLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL  109 (282)
Q Consensus        31 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  109 (282)
                      ..++.++.+++.++.+. .+++...... +|+.|++++|.+. .++. .+..+++|+.|++..|.+. .++......+.|
T Consensus       113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L  188 (394)
T COG4886         113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL  188 (394)
T ss_pred             hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhh-hhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence            34456666666666665 3444444453 6777777777664 4432 3456667777777777666 345544456667


Q ss_pred             eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCc
Q 039577          110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN  189 (282)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  189 (282)
                      +.|++++|.+..  +|..+.....|+++.+++|.....+.....+.++..+.+.+|++. .++..++.++++++|++++|
T Consensus       189 ~~L~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         189 NNLDLSGNKISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             hheeccCCcccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceeccccc
Confidence            777777766633  554444455566666666643322222124555555666666654 44555566666777777777


Q ss_pred             ccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577          190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS  224 (282)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~  224 (282)
                      .++.        ++. +.... +++.++++++.+.
T Consensus       266 ~i~~--------i~~-~~~~~-~l~~L~~s~n~~~  290 (394)
T COG4886         266 QISS--------ISS-LGSLT-NLRELDLSGNSLS  290 (394)
T ss_pred             cccc--------ccc-ccccC-ccCEEeccCcccc
Confidence            6652        222 33344 6777777766555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=8e-11  Score=101.50  Aligned_cols=176  Identities=33%  Similarity=0.382  Sum_probs=89.4

Q ss_pred             CCCCccEEEcccCeecccCCcCCcCCC-CceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccE
Q 039577           81 DCIMLRRLSFSFNKIRGWIPQKIGNLT-ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLEN  159 (282)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  159 (282)
                      .++.++.+.+..+.+. .++....... +|+.|++++|.+..  ++..+..+++|+.|.++.|.+....+.....+.|+.
T Consensus       114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             cccceeEEecCCcccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            3345556666555555 3444444443 56666666665532  333455566666666666665533322214555666


Q ss_pred             EEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcc
Q 039577          160 LFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIK  239 (282)
Q Consensus       160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~  239 (282)
                      +++++|.++ .+|........|+++.+++|.+.        ..+..+.... ++..+.+.+|.+. ..+..++.+     
T Consensus       191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~--------~~~~~~~~~~-~l~~l~l~~n~~~-~~~~~~~~l-----  254 (394)
T COG4886         191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII--------ELLSSLSNLK-NLSGLELSNNKLE-DLPESIGNL-----  254 (394)
T ss_pred             eeccCCccc-cCchhhhhhhhhhhhhhcCCcce--------ecchhhhhcc-cccccccCCceee-eccchhccc-----
Confidence            666666665 55554434445666666666322        2222333333 4555555555444 223333332     


Q ss_pred             ccccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          240 CNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       240 l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                         ++++.|++++|.++ .++. +..+.+++.+++++|.++
T Consensus       255 ---~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         255 ---SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ---cccceecccccccc-cccc-ccccCccCEEeccCcccc
Confidence               34555666666665 3333 555666666666665554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=2.1e-12  Score=109.95  Aligned_cols=168  Identities=23%  Similarity=0.339  Sum_probs=77.2

Q ss_pred             EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcc
Q 039577           88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL  167 (282)
Q Consensus        88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  167 (282)
                      .+++.|++. .+|..+..+..|+.+.+..|.+..  +|..+.++..|.+++++.|.+.-.+ ..+..--|+.|-+++|++
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lpLkvli~sNNkl  155 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLSHLP-DGLCDLPLKVLIVSNNKL  155 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchhhcCC-hhhhcCcceeEEEecCcc
Confidence            344444444 344444444444444444444422  4444444555555555555444222 222122244445555554


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG  247 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~  247 (282)
                      + .+|..++....|..|+.+.|.+.        .+|..++.+. +|+.+.+..|++. .+|..+..+         .|.+
T Consensus       156 ~-~lp~~ig~~~tl~~ld~s~nei~--------slpsql~~l~-slr~l~vrRn~l~-~lp~El~~L---------pLi~  215 (722)
T KOG0532|consen  156 T-SLPEEIGLLPTLAHLDVSKNEIQ--------SLPSQLGYLT-SLRDLNVRRNHLE-DLPEELCSL---------PLIR  215 (722)
T ss_pred             c-cCCcccccchhHHHhhhhhhhhh--------hchHHhhhHH-HHHHHHHhhhhhh-hCCHHHhCC---------ceee
Confidence            4 44544444445555555555443        3333444443 4555555555444 334333322         2445


Q ss_pred             eeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       248 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      ||+++|.++ .+|.+|.+|.+|++|.|.+|.+.
T Consensus       216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             eecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            555555554 44555555555555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=8.6e-12  Score=103.13  Aligned_cols=215  Identities=22%  Similarity=0.197  Sum_probs=112.0

Q ss_pred             cCCCCCcEEEcCCCcccccCCC-CccCCCCCccEEEcccCeeccc--CCcCCcCCCCceEEEecCCCCCCCCCCccccCC
Q 039577           55 WQLQRLRIVDLSSGIIPGSLPD-DTSGDCIMLRRLSFSFNKIRGW--IPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS  131 (282)
Q Consensus        55 ~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  131 (282)
                      .++.+|+...+.++... ..+. .-...+++++.|+++.|-+...  +......+++|+.|+++.|++....-...-..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            35667777777776653 2221 2345677777777776654421  122334567777777777766221111112245


Q ss_pred             CCCcEEEecCccccccCCCCc--CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccccc
Q 039577          132 SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNL  209 (282)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~  209 (282)
                      +.++.|.+++|++++....++  .+++|+.|++..|...........-+..|++|++++|.+-+..     .+ .-.+.+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----~~-~~~~~l  270 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----QG-YKVGTL  270 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----cc-cccccc
Confidence            667777777777764433333  5677777777776322111222233456777777777665321     11 123344


Q ss_pred             ccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecch--hhhccCCCceeeccCccCC
Q 039577          210 STSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPT--CLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       210 ~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~--~~~~l~~L~~l~l~~n~~~  280 (282)
                      | .|+.|+++.+++....-..........  .+++|+.|++..|.+. +.++  .+..+++|+.+.+..|.++
T Consensus       271 ~-~L~~Lnls~tgi~si~~~d~~s~~kt~--~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  271 P-GLNQLNLSSTGIASIAEPDVESLDKTH--TFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             c-chhhhhccccCcchhcCCCccchhhhc--ccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            4 666676766666532211121111111  1366677777777664 2221  2334566666666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=9.7e-11  Score=108.63  Aligned_cols=105  Identities=26%  Similarity=0.249  Sum_probs=49.8

Q ss_pred             ceEEEEcCCCc--cccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577           11 RVTALSLPNLT--LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus        11 ~l~~l~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++|-+.+|.  +.......|..++.|++||+++|.-.+.+|.+++.+.+||+|++++..+. .+|. .++++..|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhhee
Confidence            45555555543  22111222444555555555555444455555555555555555555553 4554 44555555555


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCC
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGN  117 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  117 (282)
                      ++..+......+.....+.+|++|.+...
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeecc
Confidence            55544332222333333555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=3e-10  Score=85.30  Aligned_cols=122  Identities=25%  Similarity=0.311  Sum_probs=30.4

Q ss_pred             CCCCcEEEcCCCcccccCCCCccC-CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccc-cCCCCC
Q 039577           57 LQRLRIVDLSSGIIPGSLPDDTSG-DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVI-FNSSNI  134 (282)
Q Consensus        57 l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L  134 (282)
                      +.+++.|++.+|.++ .+..  +. .+.+|+.|++++|.+.. + ..+..+++|+.|++++|.++.  +...+ ..+++|
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L   90 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS--ISEGLDKNLPNL   90 (175)
T ss_dssp             -------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S---CHHHHHH-TT-
T ss_pred             ccccccccccccccc-cccc--hhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc--cccchHHhCCcC
Confidence            334444444444443 2221  21 34444555555544441 2 233444555555555555422  22222 234455


Q ss_pred             cEEEecCccccccCC-CCc-CCCCccEEEeecCcceeecc----chhhCCCCCcEEec
Q 039577          135 QVIILYGNHLSGHLR-SSI-YLPNLENLFLWQNNLCGIVP----DSICNASEVTILEL  186 (282)
Q Consensus       135 ~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l  186 (282)
                      +.|.+++|.+..... ..+ .+++|+.|++.+|+++ ..+    ..+..+|+|+.||-
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence            555555554432211 111 4566666666666655 222    23456677777754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=6e-10  Score=83.69  Aligned_cols=127  Identities=27%  Similarity=0.295  Sum_probs=42.8

Q ss_pred             ccCCCCccEEEecCCcceeeCCcccc-CCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCC-cCCC
Q 039577           30 IGNLSFLVSLTSVAKSFYGTLPNELW-QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLT  107 (282)
Q Consensus        30 ~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~  107 (282)
                      +.+..+++.|+|.+|.+.. + +.+. .+.+|+.|++++|.+. .++  .+..+++|++|++++|+++. +...+ ..++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence            3445567888888877763 3 2344 4677888888888875 454  35667788888888888773 44333 3577


Q ss_pred             CceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCC---c-CCCCccEEEe
Q 039577          108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSS---I-YLPNLENLFL  162 (282)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~-~~~~L~~L~l  162 (282)
                      +|++|++++|.+..-.--..+..+++|+.|++.+|.++.....-   + .+|+|+.||-
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            88888888887743222234566778888888888776443211   1 5677777764

>PLN03150 hypothetical protein; Provisional

Probab=98.89  E-value=4e-09  Score=95.64  Aligned_cols=106  Identities=29%  Similarity=0.490  Sum_probs=63.1

Q ss_pred             ccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEec
Q 039577           36 LVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLD  115 (282)
Q Consensus        36 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  115 (282)
                      ++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            55666666666666666666666666666666666655555 45666666666666666665566666666666666666


Q ss_pred             CCCCCCCCCCccccCC-CCCcEEEecCcc
Q 039577          116 GNNLQAGLLPSVIFNS-SNIQVIILYGNH  143 (282)
Q Consensus       116 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~  143 (282)
                      +|.+ .+.+|..+... .++..+++.+|.
T Consensus       499 ~N~l-~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSL-SGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcc-cccCChHHhhccccCceEEecCCc
Confidence            6665 44455444332 234455555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=2e-09  Score=100.12  Aligned_cols=255  Identities=23%  Similarity=0.252  Sum_probs=134.8

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCc--ceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKS--FYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   87 (282)
                      ..+++..+-++.+.. ++.+ ..+++|++|-+..|.  +.......|..++.|+.||+++|.-.+.+|. .++.+.+|++
T Consensus       523 ~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhc
Confidence            455666666665532 2221 234577777777765  3322223355688888888887655457777 7777888888


Q ss_pred             EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccC--CCCc-CCCCccEEEeec
Q 039577           88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL--RSSI-YLPNLENLFLWQ  164 (282)
Q Consensus        88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~-~~~~L~~L~l~~  164 (282)
                      |+++++.+. .+|..+.++..|.+|++..+.. ....+.....+.+|++|.+.........  ...+ .+..|+.+....
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~-l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGR-LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccc-cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            888887777 5788888888888888876654 2223445555777887777654421111  0111 233333333322


Q ss_pred             CcceeeccchhhCCCCCc----EEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcccc--------
Q 039577          165 NNLCGIVPDSICNASEVT----ILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFG--------  232 (282)
Q Consensus       165 ~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--------  232 (282)
                      ...  .+..-+.....|.    .+.+.++..        ...+..+..+. +|+.|.+.++.+......+..        
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~--------~~~~~~~~~l~-~L~~L~i~~~~~~e~~~~~~~~~~~~~~f  746 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSK--------RTLISSLGSLG-NLEELSILDCGISEIVIEWEESLIVLLCF  746 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhccccc--------ceeeccccccc-CcceEEEEcCCCchhhcccccccchhhhH
Confidence            211  0000011111111    111111111        12334555666 888888888876522221211        


Q ss_pred             ---------CCccCcccc----ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          233 ---------NLSNMIKCN----LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       233 ---------~l~~l~~l~----l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                               ++..++.+.    .++|+.|.+..+.....+......+..+...-+..+.+.
T Consensus       747 ~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  747 PNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             HHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence                     111111111    577888888877666555555555555555444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=5.6e-09  Score=64.63  Aligned_cols=60  Identities=32%  Similarity=0.368  Sum_probs=49.6

Q ss_pred             ccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccC
Q 039577          212 SLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRL  279 (282)
Q Consensus       212 ~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~  279 (282)
                      +|++|++++|.++...+..+..+        ++|++|++++|.++...+..|..+++|+++++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l--------~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNL--------PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTG--------TTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCC--------CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            78999999998884444566664        6788999999999866677899999999999999986

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=1.3e-08  Score=63.04  Aligned_cols=59  Identities=27%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI   69 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~   69 (282)
                      ++++|++++|.+...-+..|..+++|++|++++|.+...-+..+..+++|+.+++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555543333344555555555555555543334444455555555555543

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.74  E-value=8.6e-10  Score=87.59  Aligned_cols=130  Identities=22%  Similarity=0.145  Sum_probs=75.3

Q ss_pred             cCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCce
Q 039577           31 GNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV  110 (282)
Q Consensus        31 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  110 (282)
                      ...+-|+++|+++|.++ .+.+++.-.+.++.|++++|.+. .+.  .+..+++|+.|++++|.+. .+...=.++.+++
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            34456666777776665 34455555667777777777664 332  3556667777777766655 2222223456666


Q ss_pred             EEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCC-CCc-CCCCccEEEeecCcce
Q 039577          111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLR-SSI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus       111 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~  168 (282)
                      +|.+..|.+..  + .++..+.+|..|++.+|.+..... ..+ .++.|+.+.+.+|.+.
T Consensus       356 tL~La~N~iE~--L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  356 TLKLAQNKIET--L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeehhhhhHhh--h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            77776665521  2 345566666677777666642211 222 5666777777776665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.66  E-value=8.5e-10  Score=86.34  Aligned_cols=243  Identities=18%  Similarity=0.170  Sum_probs=114.9

Q ss_pred             CceEEEEcCCCccccC----CCccccCCCCccEEEecCCcce---ee-------CCccccCCCCCcEEEcCCCcccccCC
Q 039577           10 RRVTALSLPNLTLGGT----IPPHIGNLSFLVSLTSVAKSFY---GT-------LPNELWQLQRLRIVDLSSGIIPGSLP   75 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~-------~~~~l~~l~~L~~L~l~~~~~~~~~~   75 (282)
                      ..++.++++||.+...    +...+.+-.+|+..++++-...   ..       +-+.+..|+.|+..+++.|.+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4667777777777543    3334455566777766642211   11       11334466777777777766643333


Q ss_pred             C---CccCCCCCccEEEcccCeecccCCcCC-------------cCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEe
Q 039577           76 D---DTSGDCIMLRRLSFSFNKIRGWIPQKI-------------GNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIIL  139 (282)
Q Consensus        76 ~---~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  139 (282)
                      .   +.++....|++|.+++|.+...-...+             ..-|.|+......|++..  -+...+.         
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen--gs~~~~a---------  178 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN--GSKELSA---------  178 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc--CcHHHHH---------
Confidence            2   133445566666666665441100111             122445555555555422  1111000         


Q ss_pred             cCccccccCCCCc-CCCCccEEEeecCcceeecc-----chhhCCCCCcEEeccCcccceecCCCCCCCCCccccccccc
Q 039577          140 YGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVP-----DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSL  213 (282)
Q Consensus       140 ~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L  213 (282)
                                ..+ .-..|+.+.+..|.+.....     ..+.++.+|+.|++++|.++....   ..+...+..|+ .|
T Consensus       179 ----------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS---~~La~al~~W~-~l  244 (388)
T COG5238         179 ----------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS---RYLADALCEWN-LL  244 (388)
T ss_pred             ----------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH---HHHHHHhcccc-hh
Confidence                      000 11245555555555441100     112344566666666666552211   12223344455 56


Q ss_pred             ceEEeecccceecCCccc-cCCccCccccccccceeeccCCeeeeecchh--h-----hccCCCceeeccCccCC
Q 039577          214 ENFYASSCQLSGGIPVGF-GNLSNMIKCNLESLFGLLLGGDALEGQIPTC--L-----ANLTSLISLNLRSIRLN  280 (282)
Q Consensus       214 ~~L~l~~n~~~~~~~~~~-~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~--~-----~~l~~L~~l~l~~n~~~  280 (282)
                      ++|.+..|.++......+ ..+..   +..++|..|...+|...+.+...  +     ..+|-|..+.+.||+|.
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e---~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNE---KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhh---hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            667666665553322211 12211   22366666666666555443221  1     13567777777777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.51  E-value=1.3e-08  Score=88.25  Aligned_cols=108  Identities=23%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577           30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL  109 (282)
Q Consensus        30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  109 (282)
                      +..++.|+.+++.+|.+.. +...+..+++|++|++++|.+. .+..  +..++.|+.|++.+|.+..  ...+..++.|
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchh--ccCCccchhh
Confidence            3444555555555555542 2111344555555555555553 3321  3344445555555555542  2233345555


Q ss_pred             eEEEecCCCCCCCCCCcc-ccCCCCCcEEEecCcccc
Q 039577          110 VELYLDGNNLQAGLLPSV-IFNSSNIQVIILYGNHLS  145 (282)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  145 (282)
                      +.+++++|.++.  +... ...+.+++.+.+.+|.+.
T Consensus       165 ~~l~l~~n~i~~--ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  165 KLLDLSYNRIVD--IENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             hcccCCcchhhh--hhhhhhhhccchHHHhccCCchh
Confidence            555555555422  2111 233444555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=5.5e-10  Score=88.50  Aligned_cols=179  Identities=19%  Similarity=0.126  Sum_probs=114.0

Q ss_pred             CccEEEecCCcceee-CCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-eccc-CCcCCcCCCCceE
Q 039577           35 FLVSLTSVAKSFYGT-LPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-IRGW-IPQKIGNLTELVE  111 (282)
Q Consensus        35 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~  111 (282)
                      +|+.+||+...++.. +..-+..|.+|+.+.+.++.+.+.+.. .+.+-.+|+.+++++|. ++.. +...+..++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            588888887777532 233456788888888888888655555 56677888888888764 2211 1123456788888


Q ss_pred             EEecCCCCCCCCCCccccC-CCCCcEEEecCccccccCC--CCc--CCCCccEEEeecCcce-eeccchhhCCCCCcEEe
Q 039577          112 LYLDGNNLQAGLLPSVIFN-SSNIQVIILYGNHLSGHLR--SSI--YLPNLENLFLWQNNLC-GIVPDSICNASEVTILE  185 (282)
Q Consensus       112 L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~--~~~--~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~  185 (282)
                      |+++++.+....+...+.+ -++|+.|+++|+.-.....  ..+  ++++|..|+++++... ......+.+++.|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            9998887744332222223 2578888888765321111  111  6888999999887543 33344566788889998


Q ss_pred             ccCcccceecCCCCCCCCCcccccccccceEEeecc
Q 039577          186 LSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC  221 (282)
Q Consensus       186 l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n  221 (282)
                      ++.|..-  +|+    .--.+...| .|..|++-++
T Consensus       345 lsRCY~i--~p~----~~~~l~s~p-sl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDI--IPE----TLLELNSKP-SLVYLDVFGC  373 (419)
T ss_pred             hhhhcCC--ChH----HeeeeccCc-ceEEEEeccc
Confidence            8888332  222    111355666 8888888764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.36  E-value=6.1e-08  Score=84.07  Aligned_cols=217  Identities=26%  Similarity=0.279  Sum_probs=111.5

Q ss_pred             CCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEE
Q 039577           33 LSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL  112 (282)
Q Consensus        33 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  112 (282)
                      +..++.+.+..|.+.. +-..+..+++|+.+++.+|.+. .+.. .+..+++|++|++++|.+..  -..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~-~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIEN-LLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hccc-chhhhhcchheecccccccc--ccchhhccchhhh
Confidence            3444555555555542 2223556677777777777765 3332 24566777777777777663  2234555667777


Q ss_pred             EecCCCCCCCCCCccccCCCCCcEEEecCccccccCC-CCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccc
Q 039577          113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLR-SSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF  191 (282)
Q Consensus       113 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  191 (282)
                      ++.+|.+..  + ..+..+..|+.+++++|.+..... ..-.+.+++.+++.+|.+. .+ ..+.....+..+++..|.+
T Consensus       146 ~l~~N~i~~--~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i-~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISD--I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EI-EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchh--c-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cc-cchHHHHHHHHhhcccccc
Confidence            777776632  2 234446666777777776654444 1113566666666666654 21 1122233344445566655


Q ss_pred             ceecCCCCCCCCCcccccc-cccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCc
Q 039577          192 SCLIPNTSGVFPNSIGNLS-TSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLI  270 (282)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~  270 (282)
                      +..-     .++    ... .+|+++++.+|.+. .++..+..+        ..+..|++.+|.+...  ..+...+.+.
T Consensus       221 ~~~~-----~l~----~~~~~~L~~l~l~~n~i~-~~~~~~~~~--------~~l~~l~~~~n~~~~~--~~~~~~~~~~  280 (414)
T KOG0531|consen  221 SKLE-----GLN----ELVMLHLRELYLSGNRIS-RSPEGLENL--------KNLPVLDLSSNRISNL--EGLERLPKLS  280 (414)
T ss_pred             eecc-----Ccc----cchhHHHHHHhcccCccc-ccccccccc--------ccccccchhhcccccc--ccccccchHH
Confidence            4221     010    111 02677777777766 332223332        3455566666655421  2334444444


Q ss_pred             eeeccCccC
Q 039577          271 SLNLRSIRL  279 (282)
Q Consensus       271 ~l~l~~n~~  279 (282)
                      ++....|.+
T Consensus       281 ~~~~~~~~~  289 (414)
T KOG0531|consen  281 ELWLNDNKL  289 (414)
T ss_pred             HhccCcchh
Confidence            444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.8e-09  Score=84.56  Aligned_cols=181  Identities=20%  Similarity=0.157  Sum_probs=117.9

Q ss_pred             CCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCC-CCCCCCCccccCCCCCcE
Q 039577           58 QRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN-LQAGLLPSVIFNSSNIQV  136 (282)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~  136 (282)
                      ..|+.+|++...++..---..+..+.+|+.|.+.++++.+.+...+.+..+|+.|+++.+. ++.....-.+.++..|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3588999999887633222255678889999999999887666777888999999998865 322223334567888999


Q ss_pred             EEecCccccccCCCCc---CCCCccEEEeecCcce---eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccc
Q 039577          137 IILYGNHLSGHLRSSI---YLPNLENLFLWQNNLC---GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLS  210 (282)
Q Consensus       137 L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~  210 (282)
                      |++++|.........+   --.+|..|+++++.-.   .++.--...++++.+||+++|..-..      .....+.+.+
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~------~~~~~~~kf~  338 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN------DCFQEFFKFN  338 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc------hHHHHHHhcc
Confidence            9999998753332222   2567888888886432   12222335688999999998844311      1122455677


Q ss_pred             cccceEEeecccceecCCccccCCccCccccccccceeeccC
Q 039577          211 TSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGG  252 (282)
Q Consensus       211 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~  252 (282)
                       .|+.|.++.|..  .+|..+-.+..     .|.+..||+-+
T Consensus       339 -~L~~lSlsRCY~--i~p~~~~~l~s-----~psl~yLdv~g  372 (419)
T KOG2120|consen  339 -YLQHLSLSRCYD--IIPETLLELNS-----KPSLVYLDVFG  372 (419)
T ss_pred             -hheeeehhhhcC--CChHHeeeecc-----CcceEEEEecc
Confidence             899999999853  34554433322     25555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=1.2e-07  Score=75.52  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=43.9

Q ss_pred             CceEEEEcCCCcccc--CCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577           10 RRVTALSLPNLTLGG--TIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   87 (282)
                      .+++++|+.+|.++.  .+...+..+|+|++|+++.|.+...+........+|+.+.+.+..+...-....+..+|.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            355666666666553  233344566666666666666543332111345566666666655432222224455666666


Q ss_pred             EEcccC
Q 039577           88 LSFSFN   93 (282)
Q Consensus        88 L~l~~~   93 (282)
                      |+++.|
T Consensus       151 lHmS~N  156 (418)
T KOG2982|consen  151 LHMSDN  156 (418)
T ss_pred             hhhccc
Confidence            666655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.25  E-value=1.1e-06  Score=50.05  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=24.6

Q ss_pred             ccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          244 SLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       244 ~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      +|++|++++|.++ .+|..+.++++|+.|++++|+|++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            5677777777777 455567777777777777777653

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.17  E-value=2.2e-07  Score=82.27  Aligned_cols=156  Identities=23%  Similarity=0.244  Sum_probs=86.1

Q ss_pred             CcCCcCCCCceEEEecCCCCCCCCCCccccCCC-CCcEEEecCc------ccc---ccCCCCcCCCCccEEEeecCccee
Q 039577          100 PQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS-NIQVIILYGN------HLS---GHLRSSIYLPNLENLFLWQNNLCG  169 (282)
Q Consensus       100 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~------~~~---~~~~~~~~~~~L~~L~l~~~~~~~  169 (282)
                      |-.+..+..|+.|.+.++.+..   ..++..+. +|++|.....      -+.   ........+..|...++++|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~---~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST---AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh---hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            5566778889999998887622   12222221 2222221100      000   11112224566777777777776 


Q ss_pred             eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCc-cccCCccCcccccccccee
Q 039577          170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV-GFGNLSNMIKCNLESLFGL  248 (282)
Q Consensus       170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~~l~l~~l~~L  248 (282)
                      .+-..+.-++.++.|++++|++....         .+..++ +|+.||++.|.+. .+|. ....         .+|+.|
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v~---------~Lr~l~-~LkhLDlsyN~L~-~vp~l~~~g---------c~L~~L  237 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKVD---------NLRRLP-KLKHLDLSYNCLR-HVPQLSMVG---------CKLQLL  237 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhhH---------HHHhcc-cccccccccchhc-cccccchhh---------hhheee
Confidence            55555666777888888888776331         244455 7888888888776 4443 1111         245566


Q ss_pred             eccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      .+++|.++. + .++.++.+|..||+++|-|++
T Consensus       238 ~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  238 NLRNNALTT-L-RGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             eecccHHHh-h-hhHHhhhhhhccchhHhhhhc
Confidence            666666552 1 445566666666666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.06  E-value=7.7e-08  Score=85.11  Aligned_cols=126  Identities=23%  Similarity=0.236  Sum_probs=76.1

Q ss_pred             CCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEE
Q 039577           59 RLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVII  138 (282)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  138 (282)
                      .|...++++|.+. .+.. .+.-++.+++|++++|++.. +. .+..++.|++||+++|.++.  +|..-..-.+|+.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhcc--ccccchhhhhheeee
Confidence            4455555566553 3333 45567778888888887773 33 56777888888888887744  554222234577777


Q ss_pred             ecCccccccCCCCc-CCCCccEEEeecCcceeec-cchhhCCCCCcEEeccCcccc
Q 039577          139 LYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIV-PDSICNASEVTILELSKNLFS  192 (282)
Q Consensus       139 l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~  192 (282)
                      +.+|.++...  .+ .+.+|+.|++++|-+.+.- -..+..+..|+.|.+.+|.+-
T Consensus       239 lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777765321  22 5777777778777665211 111334556677777777653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=5.6e-05  Score=64.21  Aligned_cols=136  Identities=20%  Similarity=0.176  Sum_probs=80.7

Q ss_pred             CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEE
Q 039577           81 DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENL  160 (282)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  160 (282)
                      .+.+++.|+++.|.+. .+|.   -..+|+.|.++++.- ...+|..+  +.+|+.|.+.+|......     ...|+.|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCccccccc-----ccccceE
Confidence            4678999999999877 4562   234699999987543 22355433  368999999987322222     3567778


Q ss_pred             EeecCcce--eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCc
Q 039577          161 FLWQNNLC--GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMI  238 (282)
Q Consensus       161 ~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  238 (282)
                      ++..+...  +.+|      ++|+.|.+.++....  +   ..+|.   .+|.+|+.|++.+|... ..|..+.      
T Consensus       118 ~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~--~---~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP------  176 (426)
T PRK15386        118 EIKGSATDSIKNVP------NGLTSLSINSYNPEN--Q---ARIDN---LISPSLKTLSLTGCSNI-ILPEKLP------  176 (426)
T ss_pred             EeCCCCCcccccCc------chHhheecccccccc--c---ccccc---ccCCcccEEEecCCCcc-cCccccc------
Confidence            77655432  1333      356777765432110  0   01111   24458999999998765 3444332      


Q ss_pred             cccccccceeeccCC
Q 039577          239 KCNLESLFGLLLGGD  253 (282)
Q Consensus       239 ~l~l~~l~~L~l~~n  253 (282)
                          .+|+.|.++.+
T Consensus       177 ----~SLk~L~ls~n  187 (426)
T PRK15386        177 ----ESLQSITLHIE  187 (426)
T ss_pred             ----ccCcEEEeccc
Confidence                35666776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=1.9e-06  Score=68.87  Aligned_cols=135  Identities=15%  Similarity=0.094  Sum_probs=73.8

Q ss_pred             CCCCCcEEEcCCCcccc--cCCCCccCCCCCccEEEcccCeecccCCcCC-cCCCCceEEEecCCCCCCCCCCccccCCC
Q 039577           56 QLQRLRIVDLSSGIIPG--SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVIFNSS  132 (282)
Q Consensus        56 ~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  132 (282)
                      .++.++.+|+.+|.+.+  ++-. .+..+|.|++|+++.|++...+ ..+ ....+|+.|.+.+..+.+......+..++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            46778888888887642  1222 4567888888888888776422 222 24567888888777664433334455667


Q ss_pred             CCcEEEecCccccccCCC--Cc--CCCCccEEEeecCccee--eccchhhCCCCCcEEeccCcccc
Q 039577          133 NIQVIILYGNHLSGHLRS--SI--YLPNLENLFLWQNNLCG--IVPDSICNASEVTILELSKNLFS  192 (282)
Q Consensus       133 ~L~~L~l~~~~~~~~~~~--~~--~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~  192 (282)
                      .++.|+++.|.+.....+  ..  .-+.+++++...|....  +.-.....++++..+-+..|.+.
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK  212 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK  212 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence            777777777744311110  01  12345555555443321  00011123456666656666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.3e-05  Score=45.63  Aligned_cols=36  Identities=31%  Similarity=0.342  Sum_probs=17.9

Q ss_pred             CccEEEecCCcceeeCCccccCCCCCcEEEcCCCccc
Q 039577           35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP   71 (282)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~   71 (282)
                      +|++|++++|.+. .+|+.+.+|++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555554 34444555555555555555543

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.79  E-value=7.5e-05  Score=56.53  Aligned_cols=102  Identities=19%  Similarity=0.230  Sum_probs=55.4

Q ss_pred             CCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCcccc-CCCCCcEEEecCccccccCC-CCc-CCCCccE
Q 039577           83 IMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF-NSSNIQVIILYGNHLSGHLR-SSI-YLPNLEN  159 (282)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~  159 (282)
                      .+...+++++|.+..  ...|..+++|..|.+++|+++.  +...+. -+++|+.|.+.+|.+..... ..+ .+++|++
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            345556666665552  2335566666666666666633  222232 23556666666666543321 111 4667777


Q ss_pred             EEeecCcceeecc----chhhCCCCCcEEeccCc
Q 039577          160 LFLWQNNLCGIVP----DSICNASEVTILELSKN  189 (282)
Q Consensus       160 L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~  189 (282)
                      |.+-+|.++ .-.    ..+..+++|++||++.-
T Consensus       118 Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchh-cccCceeEEEEecCcceEeehhhh
Confidence            777666665 211    23456677777777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.77  E-value=0.00025  Score=60.35  Aligned_cols=55  Identities=15%  Similarity=0.036  Sum_probs=27.2

Q ss_pred             CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccC
Q 039577           32 NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFN   93 (282)
Q Consensus        32 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~   93 (282)
                      .+++++.|++++|.+. .+|.   -..+|+.|.++++.-...+|. .+  .++|+.|.+.+|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCc
Confidence            3556666666666544 3341   123466666665432223333 11  235666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.72  E-value=8.3e-06  Score=64.46  Aligned_cols=218  Identities=17%  Similarity=0.119  Sum_probs=127.3

Q ss_pred             ccCCCCCcEEEcCCCcccccCCC---CccCCCCCccEEEcccCeec---ccCC-------cCCcCCCCceEEEecCCCCC
Q 039577           54 LWQLQRLRIVDLSSGIIPGSLPD---DTSGDCIMLRRLSFSFNKIR---GWIP-------QKIGNLTELVELYLDGNNLQ  120 (282)
Q Consensus        54 l~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~  120 (282)
                      +..+..+..+++++|.+...-..   ..+..-.+|+..+++..-..   ..++       ..+-++++|+..++++|-+ 
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf-  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF-  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc-
Confidence            34578899999999998532211   02344556777766543211   1112       2244679999999999987 


Q ss_pred             CCCCCc----cccCCCCCcEEEecCccccccCCCCc--------------CCCCccEEEeecCcceeeccch-----hhC
Q 039577          121 AGLLPS----VIFNSSNIQVIILYGNHLSGHLRSSI--------------YLPNLENLFLWQNNLCGIVPDS-----ICN  177 (282)
Q Consensus       121 ~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~--------------~~~~L~~L~l~~~~~~~~~~~~-----l~~  177 (282)
                      ....|.    .+.+-..|++|.+.+|++....-.-+              .-+.|+......|++. ..+..     +..
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s  183 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES  183 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence            333333    34566889999999998753321111              2466788877777765 43321     222


Q ss_pred             CCCCcEEeccCcccceecCCCCCCCC-CcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeee
Q 039577          178 ASEVTILELSKNLFSCLIPNTSGVFP-NSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALE  256 (282)
Q Consensus       178 ~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~  256 (282)
                      -..|+++.+..|.|.   |.++..+. .-+..+. +|+.||+..|-++......++.  .+..|  +.|++|.+.+|.+.
T Consensus       184 h~~lk~vki~qNgIr---pegv~~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~--al~~W--~~lrEL~lnDClls  255 (388)
T COG5238         184 HENLKEVKIQQNGIR---PEGVTMLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLAD--ALCEW--NLLRELRLNDCLLS  255 (388)
T ss_pred             hcCceeEEeeecCcC---cchhHHHHHHHHHHhC-cceeeeccccchhhhhHHHHHH--Hhccc--chhhhccccchhhc
Confidence            357888888888765   33322221 1223344 8888888888776333222211  11122  44677777777776


Q ss_pred             eecchh-hh-----ccCCCceeeccCccCCC
Q 039577          257 GQIPTC-LA-----NLTSLISLNLRSIRLNS  281 (282)
Q Consensus       257 ~~~~~~-~~-----~l~~L~~l~l~~n~~~~  281 (282)
                      ...... +.     ..|+|+.|-..+|.+.+
T Consensus       256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             cccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            554332 22     24778888888877654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=8.9e-05  Score=56.13  Aligned_cols=105  Identities=17%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccC-CcCCcCCCCceEEE
Q 039577           35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWI-PQKIGNLTELVELY  113 (282)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~  113 (282)
                      ....+||.+|.+.. + ..+..+..|.+|.+..|.++ .+....-.-+++|++|.+.+|.+.... -..+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh-c-ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            55667777776642 2 23456677777777777776 444424445666777777777655211 12244566777777


Q ss_pred             ecCCCCCC--CCCCccccCCCCCcEEEecCc
Q 039577          114 LDGNNLQA--GLLPSVIFNSSNIQVIILYGN  142 (282)
Q Consensus       114 l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~  142 (282)
                      +-+|.++.  ..-...+..+++|+.|+...-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            77776532  111224455677777776543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.70  E-value=3.4e-06  Score=76.99  Aligned_cols=155  Identities=17%  Similarity=0.167  Sum_probs=85.4

Q ss_pred             CCceEEEecCCCCCCCCCCcccc-CCCCCcEEEecCccccccCCCCc--CCCCccEEEeecCcceeeccchhhCCCCCcE
Q 039577          107 TELVELYLDGNNLQAGLLPSVIF-NSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTI  183 (282)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  183 (282)
                      .+|++|++++...-....+..++ .+|.|++|.+++-.+.......+  .+++|+.||++++.++ .+ ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            56788888775442222233333 35788888887765532211111  5788888888888776 44 45667778887


Q ss_pred             EeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCC-ccCccccccccceeeccCCeeeeecchh
Q 039577          184 LELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNL-SNMIKCNLESLFGLLLGGDALEGQIPTC  262 (282)
Q Consensus       184 L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l-~~l~~l~l~~l~~L~l~~n~~~~~~~~~  262 (282)
                      |.+.+-.+...      .--..+..+. +|+.||++....... +..+.+. ..-+.  +|+|+.||.+++.+.+..-+.
T Consensus       200 L~mrnLe~e~~------~~l~~LF~L~-~L~vLDIS~~~~~~~-~~ii~qYlec~~~--LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  200 LSMRNLEFESY------QDLIDLFNLK-KLRVLDISRDKNNDD-TKIIEQYLECGMV--LPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HhccCCCCCch------hhHHHHhccc-CCCeeeccccccccc-hHHHHHHHHhccc--CccccEEecCCcchhHHHHHH
Confidence            77776655421      0001345565 888888887544311 1111110 00011  477778887777776554433


Q ss_pred             h-hccCCCceee
Q 039577          263 L-ANLTSLISLN  273 (282)
Q Consensus       263 ~-~~l~~L~~l~  273 (282)
                      + ...|+|+.+-
T Consensus       270 ll~sH~~L~~i~  281 (699)
T KOG3665|consen  270 LLNSHPNLQQIA  281 (699)
T ss_pred             HHHhCccHhhhh
Confidence            2 2345555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=3.8e-06  Score=59.47  Aligned_cols=126  Identities=17%  Similarity=0.125  Sum_probs=76.4

Q ss_pred             CcEEEecCccccccCCCCc----CCCCccEEEeecCcceeeccchhh-CCCCCcEEeccCcccceecCCCCCCCCCcccc
Q 039577          134 IQVIILYGNHLSGHLRSSI----YLPNLENLFLWQNNLCGIVPDSIC-NASEVTILELSKNLFSCLIPNTSGVFPNSIGN  208 (282)
Q Consensus       134 L~~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~  208 (282)
                      +..++++.|.+-.. ++..    ....|..+++++|.+. .+|..+. .++.+++|++++|.++        .+|..+-.
T Consensus        29 ~h~ldLssc~lm~i-~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis--------dvPeE~Aa   98 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYI-ADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS--------DVPEELAA   98 (177)
T ss_pred             hhhcccccchhhHH-HHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh--------hchHHHhh
Confidence            44555666644311 1111    4566777888888887 6666554 4568888999998887        45555666


Q ss_pred             cccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          209 LSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       209 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      +| .|+.++++.|.+. ..|..+..+.++.        .|+.-+|... ++|..+-.-...-..+++++.++
T Consensus        99 m~-aLr~lNl~~N~l~-~~p~vi~~L~~l~--------~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~  159 (177)
T KOG4579|consen   99 MP-ALRSLNLRFNPLN-AEPRVIAPLIKLD--------MLDSPENARA-EIDVDLFYSSLPALIKLGNEPLG  159 (177)
T ss_pred             hH-HhhhcccccCccc-cchHHHHHHHhHH--------HhcCCCCccc-cCcHHHhccccHHHHHhcCCccc
Confidence            77 8899999988887 5566666654443        4444456555 55554443333333444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.54  E-value=3e-06  Score=60.01  Aligned_cols=110  Identities=21%  Similarity=0.232  Sum_probs=79.2

Q ss_pred             CceEEEecCCCCCCCCCCcc---ccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcE
Q 039577          108 ELVELYLDGNNLQAGLLPSV---IFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTI  183 (282)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  183 (282)
                      .+..++++.+.+-  .++..   +.....|+..++++|.+...++... +++.++.+.+++|.+. .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3455677766552  13333   3334567778999999875554333 7778999999999997 88988999999999


Q ss_pred             EeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcc
Q 039577          184 LELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG  230 (282)
Q Consensus       184 L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~  230 (282)
                      ++++.|.+.        ..|..+.++. ++-.|+..+|... .+|-.
T Consensus       105 lNl~~N~l~--------~~p~vi~~L~-~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen  105 LNLRFNPLN--------AEPRVIAPLI-KLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             cccccCccc--------cchHHHHHHH-hHHHhcCCCCccc-cCcHH
Confidence            999999887        6666666665 7777888777665 45443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=2.7e-05  Score=71.27  Aligned_cols=130  Identities=19%  Similarity=0.200  Sum_probs=78.3

Q ss_pred             CCCcEEEecCccccccCCCCc-----CCCCccEEEeecCcce-eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCc
Q 039577          132 SNIQVIILYGNHLSGHLRSSI-----YLPNLENLFLWQNNLC-GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNS  205 (282)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  205 (282)
                      .+|++|+++|...  ....|.     .+|.|++|.+.+-.+. +++......+++|..||+++..++..         ..
T Consensus       122 ~nL~~LdI~G~~~--~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---------~G  190 (699)
T KOG3665|consen  122 QNLQHLDISGSEL--FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---------SG  190 (699)
T ss_pred             HhhhhcCccccch--hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---------HH
Confidence            4688888877433  222222     4788888888775543 23333445678888888888777621         23


Q ss_pred             ccccccccceEEeeccccee-cCCccccCCccCccccccccceeeccCCeeeeec--c----hhhhccCCCceeeccCcc
Q 039577          206 IGNLSTSLENFYASSCQLSG-GIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQI--P----TCLANLTSLISLNLRSIR  278 (282)
Q Consensus       206 ~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~--~----~~~~~l~~L~~l~l~~n~  278 (282)
                      +..+. +|+.|.+.+=.+.. ..-..+..        +.+|+.||+|.......-  .    ++-..+|+|++||.|+..
T Consensus       191 IS~Lk-nLq~L~mrnLe~e~~~~l~~LF~--------L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  191 ISRLK-NLQVLSMRNLEFESYQDLIDLFN--------LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             Hhccc-cHHHHhccCCCCCchhhHHHHhc--------ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            44555 77777777644331 00011222        578888999876544221  1    233358999999999987


Q ss_pred             CCC
Q 039577          279 LNS  281 (282)
Q Consensus       279 ~~~  281 (282)
                      +++
T Consensus       262 i~~  264 (699)
T KOG3665|consen  262 INE  264 (699)
T ss_pred             hhH
Confidence            753

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=5.4e-06  Score=65.67  Aligned_cols=101  Identities=22%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCC-CCccCCCCCccE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLP-DDTSGDCIMLRR   87 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~   87 (282)
                      -..++.|+++||++...  ....+++.|++|.|+-|+++. + ..+..|++|++|+++.|.|. ++. ..-+.++|+|++
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            35788899999988642  123578999999999999974 3 34678999999999999986 333 224578899999


Q ss_pred             EEcccCeecccCCcC-----CcCCCCceEEEe
Q 039577           88 LSFSFNKIRGWIPQK-----IGNLTELVELYL  114 (282)
Q Consensus        88 L~l~~~~~~~~~~~~-----~~~l~~L~~L~l  114 (282)
                      |-+..|..-+.-+..     +..+++|++||=
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence            988766554433332     446788888863

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.99  E-value=0.00028  Score=55.60  Aligned_cols=128  Identities=19%  Similarity=0.156  Sum_probs=79.1

Q ss_pred             ceEEEEcCCC-ccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCC--cccccCCCCccCCCCCccE
Q 039577           11 RVTALSLPNL-TLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSG--IIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus        11 ~l~~l~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~   87 (282)
                      .++.+.+..+ ...+++......+..|+.+.+.+..++..  ..+..+++|+.|.++.|  .+.+.++. ....+|+|++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~   95 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKV   95 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeE
Confidence            3444555544 12344555555667777777776666532  23456789999999998  44334443 4456699999


Q ss_pred             EEcccCeecccCCcC---CcCCCCceEEEecCCCCCCCCC--CccccCCCCCcEEEecCcc
Q 039577           88 LSFSFNKIRGWIPQK---IGNLTELVELYLDGNNLQAGLL--PSVIFNSSNIQVIILYGNH  143 (282)
Q Consensus        88 L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~  143 (282)
                      +++++|++..  +..   +..+.+|..|++.++..+.-.-  ...+.-+++|++|+.....
T Consensus        96 l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen   96 LNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             EeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            9999998773  333   4456778888888887643111  1234446778777765443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.87  E-value=0.00061  Score=53.70  Aligned_cols=65  Identities=18%  Similarity=0.149  Sum_probs=31.1

Q ss_pred             cCCCCccEEEecCC--cceeeCCccccCCCCCcEEEcCCCcccccCCC-CccCCCCCccEEEcccCeec
Q 039577           31 GNLSFLVSLTSVAK--SFYGTLPNELWQLQRLRIVDLSSGIIPGSLPD-DTSGDCIMLRRLSFSFNKIR   96 (282)
Q Consensus        31 ~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~   96 (282)
                      ..+++|+.|.+++|  +..+.++...-.+++|+++++++|++.. +.. .-+..+++|..|++.+|...
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCcc
Confidence            34555566666655  3333343333445566666666655531 110 12344455555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.60  E-value=0.016  Score=41.25  Aligned_cols=85  Identities=19%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             cccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCC
Q 039577           29 HIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE  108 (282)
Q Consensus        29 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  108 (282)
                      +|.++++|+.+.+.. .+...-...+..+.+|+.+.+..+ +. .++...+..++.++.+.+.. .+.......+...+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            455666777777653 333223344556667777777664 33 45544566666677777654 222112334455666


Q ss_pred             ceEEEecCC
Q 039577          109 LVELYLDGN  117 (282)
Q Consensus       109 L~~L~l~~~  117 (282)
                      ++.+++..+
T Consensus        83 l~~i~~~~~   91 (129)
T PF13306_consen   83 LKNIDIPSN   91 (129)
T ss_dssp             ECEEEETTT
T ss_pred             ccccccCcc
Confidence            766666543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.56  E-value=1.4e-05  Score=66.65  Aligned_cols=85  Identities=19%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             CceEEEEcCCCccccC--CCccccCCCCccEEEecCCcceee--CCccccCCCCCcEEEcCCC-cccccCCCCccCCCCC
Q 039577           10 RRVTALSLPNLTLGGT--IPPHIGNLSFLVSLTSVAKSFYGT--LPNELWQLQRLRIVDLSSG-IIPGSLPDDTSGDCIM   84 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~   84 (282)
                      +.++.|+++|+.-.+.  +-.....+++++.|++.++.....  +-..-..|++|+.+++..+ .+++..-......+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            5678888888744332  222334678888888877763221  1111235788888888874 3432211113346778


Q ss_pred             ccEEEcccCe
Q 039577           85 LRRLSFSFNK   94 (282)
Q Consensus        85 L~~L~l~~~~   94 (282)
                      |+++++++|.
T Consensus       218 L~~lNlSwc~  227 (483)
T KOG4341|consen  218 LKYLNLSWCP  227 (483)
T ss_pred             HHHhhhccCc
Confidence            8888887775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.41  E-value=0.0024  Score=30.18  Aligned_cols=19  Identities=37%  Similarity=0.516  Sum_probs=10.8

Q ss_pred             cceeeccCCeeeeecchhhh
Q 039577          245 LFGLLLGGDALEGQIPTCLA  264 (282)
Q Consensus       245 l~~L~l~~n~~~~~~~~~~~  264 (282)
                      |++||+++|.++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            556666666666 5555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.93  E-value=0.066  Score=38.02  Aligned_cols=102  Identities=18%  Similarity=0.251  Sum_probs=58.2

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      .+++.+.+.. .+...-..+|..+++|+.+.+..+ +...-...+.++++++.+.+.. .+. .++...+..+++++.+.
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccc
Confidence            3688888875 454433456788889999999874 4433345677888999999976 433 45555778899999999


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCC
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGN  117 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~  117 (282)
                      +..+ +.......+... .++.+.+..+
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~~  113 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPSN  113 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECCC
Confidence            9654 332224456665 8898888753

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.85  E-value=0.0035  Score=29.59  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=13.9

Q ss_pred             ccceEEeecccceecCCccccC
Q 039577          212 SLENFYASSCQLSGGIPVGFGN  233 (282)
Q Consensus       212 ~L~~L~l~~n~~~~~~~~~~~~  233 (282)
                      +|++|++++|+++ .+|.++++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3677777777777 66665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.47  E-value=6e-05  Score=63.06  Aligned_cols=86  Identities=17%  Similarity=0.035  Sum_probs=54.3

Q ss_pred             CCccEEEecCCcceee--CCccccCCCCCcEEEcCCCcc-cccCCCCccCCCCCccEEEcccCe-ecccCCc-CCcCCCC
Q 039577           34 SFLVSLTSVAKSFYGT--LPNELWQLQRLRIVDLSSGII-PGSLPDDTSGDCIMLRRLSFSFNK-IRGWIPQ-KIGNLTE  108 (282)
Q Consensus        34 ~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~  108 (282)
                      ..|+.|.++++.-.+.  +.....++++++.|.+.++.. ++..-......+..|+++++..|. ++...-. ....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3688888888765433  233445799999999998763 211111123567889999988753 3322111 1235788


Q ss_pred             ceEEEecCCCC
Q 039577          109 LVELYLDGNNL  119 (282)
Q Consensus       109 L~~L~l~~~~~  119 (282)
                      |++++++++..
T Consensus       218 L~~lNlSwc~q  228 (483)
T KOG4341|consen  218 LKYLNLSWCPQ  228 (483)
T ss_pred             HHHhhhccCch
Confidence            99999998864

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.69  E-value=0.00066  Score=54.19  Aligned_cols=99  Identities=23%  Similarity=0.241  Sum_probs=66.3

Q ss_pred             CCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCC--cCCcCCCCce
Q 039577           33 LSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIP--QKIGNLTELV  110 (282)
Q Consensus        33 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~  110 (282)
                      +.+.+.|+.-+|.+....  -...|+.|+.|.++-|++. .+..  +..+.+|++|++..|.+.+ +.  ..+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhh
Confidence            445666777777776421  1246888999999999886 4443  6788889999998888873 33  2466788889


Q ss_pred             EEEecCCCCCCCCCC-----ccccCCCCCcEEE
Q 039577          111 ELYLDGNNLQAGLLP-----SVIFNSSNIQVII  138 (282)
Q Consensus       111 ~L~l~~~~~~~~~~~-----~~~~~~~~L~~L~  138 (282)
                      .|.+..|.. .+..+     .++.-+++|+.|+
T Consensus        92 ~LWL~ENPC-c~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPC-CGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCc-ccccchhHHHHHHHHcccchhcc
Confidence            998888875 22222     1334456666664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.92  E-value=0.0051  Score=46.84  Aligned_cols=84  Identities=15%  Similarity=0.160  Sum_probs=54.4

Q ss_pred             CCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecc-cceecCCccccC
Q 039577          155 PNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC-QLSGGIPVGFGN  233 (282)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~  233 (282)
                      -.++.++.+++.+..+.-..+..+++++.+.+.+|.--+.  .+++.    ++....+|+.|++++| +|+.....++.+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD--~~L~~----l~~~~~~L~~L~lsgC~rIT~~GL~~L~~  174 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD--WCLER----LGGLAPSLQDLDLSGCPRITDGGLACLLK  174 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh--HHHHH----hcccccchheeeccCCCeechhHHHHHHH
Confidence            3477788888877755566677888888888888843321  01111    2222238999999988 677555566677


Q ss_pred             CccCccccccc
Q 039577          234 LSNMIKCNLES  244 (282)
Q Consensus       234 l~~l~~l~l~~  244 (282)
                      +++|+.|++..
T Consensus       175 lknLr~L~l~~  185 (221)
T KOG3864|consen  175 LKNLRRLHLYD  185 (221)
T ss_pred             hhhhHHHHhcC
Confidence            77666665433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.77  E-value=0.048  Score=23.82  Aligned_cols=14  Identities=36%  Similarity=0.510  Sum_probs=6.6

Q ss_pred             CCCceeeccCccCC
Q 039577          267 TSLISLNLRSIRLN  280 (282)
Q Consensus       267 ~~L~~l~l~~n~~~  280 (282)
                      ++|++|++++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35666666666654

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.46  E-value=0.027  Score=27.03  Aligned_cols=21  Identities=19%  Similarity=0.200  Sum_probs=11.0

Q ss_pred             cccceeeccCCeeeeecchhh
Q 039577          243 ESLFGLLLGGDALEGQIPTCL  263 (282)
Q Consensus       243 ~~l~~L~l~~n~~~~~~~~~~  263 (282)
                      ++|+.|++++|.+++.....+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            456666666666665544433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.96  E-value=0.038  Score=42.28  Aligned_cols=35  Identities=31%  Similarity=0.327  Sum_probs=28.1

Q ss_pred             ccccceeeccCC-eeeeecchhhhccCCCceeeccC
Q 039577          242 LESLFGLLLGGD-ALEGQIPTCLANLTSLISLNLRS  276 (282)
Q Consensus       242 l~~l~~L~l~~n-~~~~~~~~~~~~l~~L~~l~l~~  276 (282)
                      .++|+.|++++| .||+..-.++..+++|+.+.+.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            478999999965 78877778888888888877653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.48  E-value=0.00077  Score=59.24  Aligned_cols=172  Identities=19%  Similarity=0.122  Sum_probs=79.0

Q ss_pred             CcCCCCceEEEecCCCCCCCCC---CccccCC-CCCcEEEecCccccccCCCCc-----CCCCccEEEeecCccee----
Q 039577          103 IGNLTELVELYLDGNNLQAGLL---PSVIFNS-SNIQVIILYGNHLSGHLRSSI-----YLPNLENLFLWQNNLCG----  169 (282)
Q Consensus       103 ~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~-~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~----  169 (282)
                      +...+.|+.|++++|.+.....   ...+... ..+++|.+..|.++......+     ....++.++++.|.+..    
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~  190 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL  190 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence            3344556666666665521111   1111222 334445555554443222111     23445555555554420    


Q ss_pred             eccchhh----CCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccc-cc
Q 039577          170 IVPDSIC----NASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL-ES  244 (282)
Q Consensus       170 ~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l-~~  244 (282)
                      .++..+.    ...++++|++.+|.++.....   .+-.++...+..+.++++..|.+.+.....+..  .+.  .. +.
T Consensus       191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~---~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~--~l~--~~~~~  263 (478)
T KOG4308|consen  191 VLSQALESAASPLSSLETLKLSRCGVTSSSCA---LLDEVLASGESLLRELDLASNKLGDVGVEKLLP--CLS--VLSET  263 (478)
T ss_pred             HHhhhhhhhhcccccHHHHhhhhcCcChHHHH---HHHHHHhccchhhHHHHHHhcCcchHHHHHHHH--Hhc--ccchh
Confidence            1122222    245667777777766532111   111223333323555777776665331111100  000  01 35


Q ss_pred             cceeeccCCeeeeecch----hhhccCCCceeeccCccCCC
Q 039577          245 LFGLLLGGDALEGQIPT----CLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       245 l~~L~l~~n~~~~~~~~----~~~~l~~L~~l~l~~n~~~~  281 (282)
                      +++++++.|.+++....    .+..++.++++.+++|.+..
T Consensus       264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            67777777777755443    34456777777777777653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.57  E-value=0.39  Score=23.33  Aligned_cols=18  Identities=44%  Similarity=0.639  Sum_probs=8.6

Q ss_pred             CCCcEEEcCCCcccccCCC
Q 039577           58 QRLRIVDLSSGIIPGSLPD   76 (282)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~   76 (282)
                      ++|+.|++.+|.+. .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34555555555553 4443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.57  E-value=0.39  Score=23.33  Aligned_cols=18  Identities=44%  Similarity=0.639  Sum_probs=8.6

Q ss_pred             CCCcEEEcCCCcccccCCC
Q 039577           58 QRLRIVDLSSGIIPGSLPD   76 (282)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~   76 (282)
                      ++|+.|++.+|.+. .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34555555555553 4443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.97  E-value=0.13  Score=45.58  Aligned_cols=114  Identities=18%  Similarity=0.112  Sum_probs=48.3

Q ss_pred             CCCccEEEeecCcceee--ccchhhCCCCCcEEeccCc-ccceecCCCCCCCCCcccccccccceEEeeccc-ceecCCc
Q 039577          154 LPNLENLFLWQNNLCGI--VPDSICNASEVTILELSKN-LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQ-LSGGIPV  229 (282)
Q Consensus       154 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~-~~~~~~~  229 (282)
                      .+.|+.+.+..+.....  +-......+.|+.|+++.+ ......+.   ......... ..|+.++++.+. ++...-.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~-~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL---LLLLLLSIC-RKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh---Hhhhhhhhc-CCcCccchhhhhccCchhHH
Confidence            45566666655533212  2233345566666666652 11111110   001111122 266666666655 3322222


Q ss_pred             cccCCccCccccccccceeeccCCe-eeeecc-hhhhccCCCceeeccCcc
Q 039577          230 GFGNLSNMIKCNLESLFGLLLGGDA-LEGQIP-TCLANLTSLISLNLRSIR  278 (282)
Q Consensus       230 ~~~~l~~l~~l~l~~l~~L~l~~n~-~~~~~~-~~~~~l~~L~~l~l~~n~  278 (282)
                      .++..       +++|+.|.+..+. +++..- .....+++|+++++++|.
T Consensus       263 ~l~~~-------c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  263 ALASR-------CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HHHhh-------CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            22210       2344455444443 333322 233345666666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.42  E-value=0.1  Score=46.12  Aligned_cols=11  Identities=27%  Similarity=0.483  Sum_probs=5.1

Q ss_pred             ccceEEeeccc
Q 039577          212 SLENFYASSCQ  222 (282)
Q Consensus       212 ~L~~L~l~~n~  222 (282)
                      .++.+.+..+.
T Consensus       363 ~l~~~~l~~~~  373 (482)
T KOG1947|consen  363 KLTDLSLSYCG  373 (482)
T ss_pred             Ccchhhhhhhh
Confidence            44444444443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.28  E-value=0.93  Score=22.26  Aligned_cols=13  Identities=23%  Similarity=0.414  Sum_probs=6.8

Q ss_pred             CCceeeccCccCC
Q 039577          268 SLISLNLRSIRLN  280 (282)
Q Consensus       268 ~L~~l~l~~n~~~  280 (282)
                      +|+.|++++|+|+
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            4555555555553

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=82.82  E-value=0.57  Score=23.39  Aligned_cols=16  Identities=31%  Similarity=0.279  Sum_probs=9.6

Q ss_pred             cccceeeccCCeeeee
Q 039577          243 ESLFGLLLGGDALEGQ  258 (282)
Q Consensus       243 ~~l~~L~l~~n~~~~~  258 (282)
                      ++|++|++++|.+..+
T Consensus         2 ~~L~~LdL~~N~i~~~   17 (28)
T smart00368        2 PSLRELDLSNNKLGDE   17 (28)
T ss_pred             CccCEEECCCCCCCHH
Confidence            3566666666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-11
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-11
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 37/261 (14%)
Query: 12  VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLP-NELWQLQRLRIVDLSSGII 70
           +T L L      G +PP  G+ S L SL   + +F G LP + L +++ L+++DLS    
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 71  PGSLPD------------DTSGDCI--------------MLRRLSFSFNKIRGWIPQKIG 104
            G LP+            D S +                 L+ L    N   G IP  + 
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL-RSSIYLPNLENLFLW 163
           N +ELV L+L  N L +G +PS + + S ++ + L+ N L G + +  +Y+  LE L L 
Sbjct: 413 NCSELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 164 QNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQL 223
            N+L G +P  + N + +  + LS N         +G  P  IG L  +L     S+   
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRL-------TGEIPKWIGRLE-NLAILKLSNNSF 523
Query: 224 SGGIPVGFGNLSNMIKCNLES 244
           SG IP   G+  ++I  +L +
Sbjct: 524 SGNIPAELGDCRSLIWLDLNT 544

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 91/233 (39%), Gaps = 45/233 (19%)
Query: 60  LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119
           L  +D+SS      +P    GDC  L+ L  S NK+ G   + I   TEL  L +  N  
Sbjct: 199 LEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 120 QAGLLPSVIFNSSNIQVIILYGNHLSGHLRS--SIYLPNLENLFLWQNNLCGIVP----- 172
             G +P +   S  +Q + L  N  +G +    S     L  L L  N+  G VP     
Sbjct: 257 -VGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 173 --------------------DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS 212
                               D++     + +L+LS N F       SG  P S+ NLS S
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-------SGELPESLTNLSAS 366
Query: 213 LENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLAN 265
           L     SS   SG I      L N+ +    +L  L L  +   G+IP  L+N
Sbjct: 367 LLTLDLSSNNFSGPI------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 37/261 (14%)
Query: 12  VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLP-NELWQLQRLRIVDLSSGII 70
           +T L L      G +PP  G+ S L SL   + +F G LP + L +++ L+++DLS    
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 71  PGSLPD------------DTSGDCI--------------MLRRLSFSFNKIRGWIPQKIG 104
            G LP+            D S +                 L+ L    N   G IP  + 
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL-RSSIYLPNLENLFLW 163
           N +ELV L+L  N L +G +PS + + S ++ + L+ N L G + +  +Y+  LE L L 
Sbjct: 416 NCSELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 164 QNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQL 223
            N+L G +P  + N + +  + LS N         +G  P  IG L  +L     S+   
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRL-------TGEIPKWIGRLE-NLAILKLSNNSF 526
Query: 224 SGGIPVGFGNLSNMIKCNLES 244
           SG IP   G+  ++I  +L +
Sbjct: 527 SGNIPAELGDCRSLIWLDLNT 547

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 91/233 (39%), Gaps = 45/233 (19%)
Query: 60  LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119
           L  +D+SS      +P    GDC  L+ L  S NK+ G   + I   TEL  L +  N  
Sbjct: 202 LEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 120 QAGLLPSVIFNSSNIQVIILYGNHLSGHLRS--SIYLPNLENLFLWQNNLCGIVP----- 172
             G +P +   S  +Q + L  N  +G +    S     L  L L  N+  G VP     
Sbjct: 260 -VGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 173 --------------------DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS 212
                               D++     + +L+LS N F       SG  P S+ NLS S
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-------SGELPESLTNLSAS 369
Query: 213 LENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLAN 265
           L     SS   SG I      L N+ +    +L  L L  +   G+IP  L+N
Sbjct: 370 LLTLDLSSNNFSGPI------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 34  SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF- 92
           S+L +     +++ G L +   Q  R+  +DLS   +P   P  +S     L  L+F + 
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS--LANLPYLNFLYI 83
Query: 93  ---NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLR 149
              N + G IP  I  LT+L  LY+   N+ +G +P  +     +  +    N LSG L 
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 150 SSI-YLPNLENLFLWQNNLCGIVPDSICNASEV-TILELSKNLFSCLIPNTSGVFPNSIG 207
            SI  LPNL  +    N + G +PDS  + S++ T + +S+N         +G  P +  
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL-------TGKIPPTFA 195
Query: 208 NLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLES 244
           NL+ +  +   S   L G   V FG+  N  K +L  
Sbjct: 196 NLNLAFVDL--SRNMLEGDASVLFGSDKNTQKIHLAK 230

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 99  IPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNL 157
           IP  + NL  L  LY+ G N   G +P  I   + +  + +   ++SG +   +  +  L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 158 ENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFY 217
             L    N L G +P SI +   +  +    N         SG  P+S G+ S    +  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN-------RISGAIPDSYGSFSKLFTSMT 180
Query: 218 ASSCQLSGGIPVGFGNLS--------NMIKCNLESLFG 247
            S  +L+G IP  F NL+        NM++ +   LFG
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 16/188 (8%)
Query: 14  ALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGS 73
           AL L NL +   I  +I    FL  L     S    LP E+  L  LR++DLS   +  S
Sbjct: 228 ALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRL-TS 284
Query: 74  LPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSN 133
           LP +  G C  L+   F F+ +   +P + GNL  L  L ++GN L+   L  +   S  
Sbjct: 285 LPAEL-GSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT 342
Query: 134 IQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVP---DSICNASEVTILELSKNL 190
             +  L  N      R  I LP+ E  F+ + N  G      DS+  ++E    +L+K  
Sbjct: 343 GLIFYLRDN------RPEIPLPH-ERRFI-EINTDGEPQREYDSLQQSTEHLATDLAKRT 394
Query: 191 FSCLIPNT 198
           F+ L  NT
Sbjct: 395 FTVLSYNT 402

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (390), Expect = 4e-45
 Identities = 66/281 (23%), Positives = 107/281 (38%), Gaps = 35/281 (12%)

Query: 1   VGVTCGVPHR--RVTALSLPNLTLGGT--IPPHIGNLSFLVSLT-SVAKSFYGTLPNELW 55
           +GV C    +  RV  L L  L L     IP  + NL +L  L      +  G +P  + 
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98

Query: 56  QLQRLRIVDLS----SGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE 111
           +L +L  + ++    SG IP  L          L  L FS+N + G +P  I +L  LV 
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFL-----SQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 112 LYLDGNNLQAGLLPSVIFN-SSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI 170
           +  DGN +  G +P    + S     + +  N L+G +  +    NL  + L +N L G 
Sbjct: 154 ITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 171 VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG 230
                 +      + L+KN  +  +          +G    +L      + ++ G +P G
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLG--------KVGLSK-NLNGLDLRNNRIYGTLPQG 263

Query: 231 FGNLSNMIKCNLESLFGLLLGGDALEGQIPT--CLANLTSL 269
              L          L  L +  + L G+IP    L      
Sbjct: 264 LTQLKF--------LHSLNVSFNNLCGEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  131 bits (333), Expect = 9e-37
 Identities = 58/271 (21%), Positives = 99/271 (36%), Gaps = 33/271 (12%)

Query: 13  TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGT--LPNELWQLQRLRIVDLS---- 66
                 N T  G +         + +L     +      +P+ L  L  L  + +     
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 67  -SGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLP 125
             G IP ++          L  L  +   + G IP  +  +  LV L    N L  G LP
Sbjct: 89  LVGPIPPAI-----AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GTLP 142

Query: 126 SVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNL-ENLFLWQNNLCGIVPDSICNASEVTI 183
             I +  N+  I   GN +SG +  S      L  ++ + +N L G +P +  N + +  
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201

Query: 184 LELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLE 243
           ++LS+N+         G      G+   + +  + +   L+  +    G   N       
Sbjct: 202 VDLSRNML-------EGDASVLFGSDK-NTQKIHLAKNSLAFDLG-KVGLSKN------- 245

Query: 244 SLFGLLLGGDALEGQIPTCLANLTSLISLNL 274
            L GL L  + + G +P  L  L  L SLN+
Sbjct: 246 -LNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (325), Expect = 1e-35
 Identities = 67/257 (26%), Positives = 105/257 (40%), Gaps = 27/257 (10%)

Query: 26  IPPHIGNLSFLVSLTSVA----KSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTS-G 80
           I   +GN + L S         +++ G L +   Q  R+  +DLS   +P   P  +S  
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 81  DCIMLRRLSFS-FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIIL 139
           +   L  L     N + G IP  I  LT+L  LY+   N+  G +P  +     +  +  
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDF 132

Query: 140 YGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASE-VTILELSKNLFSCLIPN 197
             N LSG L  SI  LPNL  +    N + G +PDS  + S+  T + +S+N  +     
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT----- 187

Query: 198 TSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEG 257
             G  P +  NL+  L     S   L G   V FG+  N           + L  ++L  
Sbjct: 188 --GKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKN--------TQKIHLAKNSLAF 235

Query: 258 QIPTCLANLTSLISLNL 274
            +   +    +L  L+L
Sbjct: 236 DLGK-VGLSKNLNGLDL 251

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.8 bits (203), Expect = 3e-18
 Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 16  SLPNLT--------LGGTIPPHIGNLSFLVSLTSVAK-SFYGTLPNELWQLQRLRIVDLS 66
           SLPNL         + G IP   G+ S L +  ++++    G +P     L  L  VDLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205

Query: 67  ----SGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAG 122
                G           G     +++  + N +   +  K+G    L  L L  N +  G
Sbjct: 206 RNMLEGDASVLF-----GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY-G 258

Query: 123 LLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNN-LCGI 170
            LP  +     +  + +  N+L G +     L   +      N  LCG 
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 154 LPNLENLFLWQNNLCG--IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLST 211
              + NL L   NL     +P S+ N   +  L +          N  G  P +I  L+ 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI------NNLVGPIPPAIAKLT- 101

Query: 212 SLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLIS 271
            L   Y +   +SG IP     +          L  L    +AL G +P  +++L +L+ 
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKT--------LVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 272 LNLRSIRLNST 282
           +     R++  
Sbjct: 154 ITFDGNRISGA 164

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (383), Expect = 1e-41
 Identities = 77/288 (26%), Positives = 119/288 (41%), Gaps = 30/288 (10%)

Query: 13  TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPG 72
             L +    L G     I   + L  L   +  F G +P     L+ L+ + L+     G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTG 283

Query: 73  SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS 132
            +PD  SG C  L  L  S N   G +P   G+ + L  L L  NN    L    +    
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 133 NIQVIILYGNHLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICN--ASEVTILELSK 188
            ++V+ L  N  SG L  S+     +L  L L  NN  G +  ++C    + +  L L  
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIK--------- 239
           N F       +G  P ++ N S  L + + S   LSG IP   G+LS +           
Sbjct: 404 NGF-------TGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 240 -------CNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280
                    +++L  L+L  + L G+IP+ L+N T+L  ++L + RL 
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (358), Expect = 4e-38
 Identities = 73/268 (27%), Positives = 113/268 (42%), Gaps = 21/268 (7%)

Query: 13  TALSLPNLTLGGTIPP-HIGNLSFLVSLTSVAKSFYGTLPNELWQL-QRLRIVDLSSGII 70
            +L+L +    G +P   +  +  L  L      F G LP  L  L   L  +DLSS   
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 71  PGSLPDD-TSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
            G +  +        L+ L    N   G IP  + N +ELV L+L  N L  G +PS + 
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS-GTIPSSLG 439

Query: 130 NSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188
           + S ++ + L+ N L G +   + Y+  LE L L  N+L G +P  + N + +  + LS 
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248
           N         +G  P  IG L  +L     S+   SG IP   G+  ++I         L
Sbjct: 500 NRL-------TGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIW--------L 543

Query: 249 LLGGDALEGQIPTCLANLTSLISLNLRS 276
            L  +   G IP  +   +  I+ N  +
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKIAANFIA 571

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (353), Expect = 1e-37
 Identities = 63/320 (19%), Positives = 107/320 (33%), Gaps = 60/320 (18%)

Query: 2   GVTCGVPHRRVTALSLPNLTL---GGTIPPHIGNLSFLVSLTSVAKSFYGTLPN------ 52
           GVTC     +VT++ L +  L      +   + +L+ L SL        G++        
Sbjct: 44  GVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS 101

Query: 53  -------------------ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFN 93
                               L     L+ +++SS  +              L  L  S N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

Query: 94  KIRGWIPQKI---GNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRS 150
            I G             EL  L + GN +  G +   +    N++ + +  N+ S  +  
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKIS-GDVD--VSRCVNLEFLDVSSNNFSTGIPF 218

Query: 151 SIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIP-------------- 196
                 L++L +  N L G    +I   +E+ +L +S N F   IP              
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278

Query: 197 -NTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDAL 255
              +G  P+ +     +L     S     G +P  FG+ S         L  L L  +  
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL--------LESLALSSNNF 330

Query: 256 EGQIPT-CLANLTSLISLNL 274
            G++P   L  +  L  L+L
Sbjct: 331 SGELPMDTLLKMRGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (352), Expect = 2e-37
 Identities = 71/284 (25%), Positives = 106/284 (37%), Gaps = 43/284 (15%)

Query: 15  LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS----SGII 70
           L L N    G IPP + N S LVSL        GT+P+ L  L +LR + L      G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 71  PGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFN 130
           P  L          L  L   FN + G IP  + N T L  + L  N L  G +P  I  
Sbjct: 459 PQEL-----MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGR 512

Query: 131 SSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
             N+ ++ L  N  SG++ + +    +L  L L  N   G +P ++   S     +++ N
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAAN 568

Query: 190 LFSCLIP-------------------NTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG 230
             +                          G+    +  LS +      +S    G     
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPT 627

Query: 231 FGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL 274
           F N  +M+         L +  + L G IP  + ++  L  LNL
Sbjct: 628 FDNNGSMM--------FLDMSYNMLSGYIPKEIGSMPYLFILNL 663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (299), Expect = 3e-30
 Identities = 64/260 (24%), Positives = 96/260 (36%), Gaps = 33/260 (12%)

Query: 22  LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS----SGIIPGSLPDD 77
           L G IP  + N + L  ++       G +P  + +L+ L I+ LS    SG IP  L   
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--- 534

Query: 78  TSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVI 137
             GDC  L  L  + N   G IP  +   +  +       N  AG     I N    +  
Sbjct: 535 --GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI-----AANFIAGKRYVYIKNDGMKKEC 587

Query: 138 ILYGN--HLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194
              GN     G     +  L       +      G    +  N   +  L++S N+ S  
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-- 645

Query: 195 IPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDA 254
                G  P  IG++   L         +SG IP   G+L       L  L    L  + 
Sbjct: 646 -----GYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRG-----LNILD---LSSNK 691

Query: 255 LEGQIPTCLANLTSLISLNL 274
           L+G+IP  ++ LT L  ++L
Sbjct: 692 LDGRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 99.6 bits (249), Expect = 1e-23
 Identities = 57/234 (24%), Positives = 84/234 (35%), Gaps = 27/234 (11%)

Query: 24  GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCI 83
           G IP  IG L  L  L     SF G +P EL   + L  +DL++ +  G++P       +
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA-----AM 558

Query: 84  MLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQ-AGLLPSVIFNSSNIQVIILYGN 142
             +    + N I G     I N     E +  GN L+  G+    +   S      +   
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618

Query: 143 HLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNT--- 198
              GH   +     ++  L +  N L G +P  I +   + IL L  N  S  IP+    
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678

Query: 199 --------------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVG--FGNLSN 236
                          G  P ++  L T L     S+  LSG IP    F     
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNNNLSGPIPEMGQFETFPP 731

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 18/190 (9%)

Query: 22  LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS------SGIIPGSLP 75
             GTIP  +   S  ++         G     +      +    +       GI    L 
Sbjct: 550 FNGTIPAAMFKQSGKIAANF----IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL- 604

Query: 76  DDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQ 135
                        + +     G       N   ++ L +  N L  G +P  I +   + 
Sbjct: 605 ----NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLF 659

Query: 136 VIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194
           ++ L  N +SG +   +  L  L  L L  N L G +P ++   + +T ++LS N  S  
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719

Query: 195 IPNTSGVFPN 204
           IP   G F  
Sbjct: 720 IP-EMGQFET 728

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 2e-17
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 22/202 (10%)

Query: 83  IMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGN 142
             +   S   N     +   + +LT L  L+L  +++  G +      S+++  + L  N
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSG-FKCSASLTSLDLSRN 110

Query: 143 HLSGHLRSSI---YLPNLENLFLWQNNLCGIVPDSI-CNASEVTILELSKNLFSCLIPNT 198
            LSG + +         L+ L +  N L      S     + + +L+LS N  S      
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 199 SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ 258
             +           L++   S  ++SG + V              +L  L +  +     
Sbjct: 171 WVLSDGC-----GELKHLAISGNKISGDVDVS----------RCVNLEFLDVSSNNFSTG 215

Query: 259 IPTCLANLTSLISLNLRSIRLN 280
           IP  L + ++L  L++   +L+
Sbjct: 216 IPF-LGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 18/182 (9%)

Query: 105 NLTELVELYLDGNNLQA--GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFL 162
              ++  + L    L      + S + + + ++ + L  +H++G +       +L +L L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 163 WQNNLCGIVPD--SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASS 220
            +N+L G V    S+ + S +  L +S N               S G    SLE    S+
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------FPGKVSGGLKLNSLEVLDLSA 160

Query: 221 CQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN 280
             +SG   VG+             L  L + G+ + G +   ++   +L  L++ S   +
Sbjct: 161 NSISGANVVGWVLSDG-----CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 281 ST 282
           + 
Sbjct: 214 TG 215

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 11/171 (6%)

Query: 15  LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS----SGII 70
            +   L   G     +  LS        ++ + G           +  +D+S    SG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 71  PGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFN 130
           P  +     G    L  L+   N I G IP ++G+L  L  L L  N L  G +P  +  
Sbjct: 649 PKEI-----GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSA 702

Query: 131 SSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQN-NLCGIVPDSICNASE 180
            + +  I L  N+LSG +                N  LCG        ++ 
Sbjct: 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 176 CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLS 235
           C   +VT ++LS    +           +S+ +L T LE+ + S+  ++G +  GF   +
Sbjct: 47  CRDDKVTSIDLSSKPLN----VGFSAVSSSLLSL-TGLESLFLSNSHINGSVS-GFKCSA 100

Query: 236 NMIKCNLESLFGLLLGGDALEGQIPT--CLANLTSLISLNLRSIRLNST 282
           +        L  L L  ++L G + T   L + + L  LN+ S  L+  
Sbjct: 101 S--------LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  114 bits (287), Expect = 7e-29
 Identities = 40/302 (13%), Positives = 84/302 (27%), Gaps = 40/302 (13%)

Query: 2   GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSL----TSVAKSFYGTLPNELWQL 57
           GV+    + RVT LSL      G +P  IG L+ L  L         +     P  +   
Sbjct: 74  GVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 58  QRLRIVDLSS-GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116
                            +  D   D   L +   + +  +  I +      +  ++    
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 117 NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY--------------------LPN 156
           NN+    +   +   + ++   +  +          +                    L +
Sbjct: 193 NNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 157 LENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNT-SGVFPNSIGNLSTSLEN 215
           L ++ ++       +P  +    E+ ++ ++ N                        ++ 
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQI 309

Query: 216 FYASSCQLSGG-IPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL 274
            Y     L    +      +       L  L       + LEG++P    +   L SLNL
Sbjct: 310 IYIGYNNLKTFPVETSLQKMK-----KLGMLE---CLYNQLEGKLPA-FGSEIKLASLNL 360

Query: 275 RS 276
             
Sbjct: 361 AY 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  108 bits (271), Expect = 9e-27
 Identities = 33/270 (12%), Positives = 77/270 (28%), Gaps = 22/270 (8%)

Query: 15  LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSL 74
             + N                           Y T   +   L+ L  V++ +      L
Sbjct: 211 FYMGNSPFVAENICEAWENENSEYA-----QQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 75  PDDTSGDCIMLRRLSFSFNKIR--------GWIPQKIGNLTELVELYLDGNNLQAGLLPS 126
           P         ++ ++ + N+                     ++  +Y+  NNL+   + +
Sbjct: 266 PTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 127 VIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
            +     + ++    N L G L +      L +L L  N +  I  +      +V  L  
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 187 SKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLF 246
           + N    +             ++ + +     S  ++       F  L         ++ 
Sbjct: 385 AHNKLKYIPNIF------DAKSV-SVMSAIDFSYNEIGSVDGKNFDPLDPTP-FKGINVS 436

Query: 247 GLLLGGDALEGQIPTCLANLTSLISLNLRS 276
            + L  + +        +  + L S+NL  
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMG 466

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 1e-24
 Identities = 40/280 (14%), Positives = 88/280 (31%), Gaps = 28/280 (10%)

Query: 15  LSLPNLTLGGTIPPHIGNLSFLVSLT-SVAKSFYGTLPNELWQLQRLRIVDLS----SGI 69
           +S   L               +  +           +   L ++++L +++       G 
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P +      G  I L  L+ ++N+I        G   ++  L    N L+         
Sbjct: 346 LP-AF-----GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 130 NSSNIQVIILYGNHLSGHLRSSIY--------LPNLENLFLWQNNLCGIVPDSICNASEV 181
           + S +  I    N +      +            N+ ++ L  N +     +     S +
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 182 TILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN 241
           + + L  N+ + +  N+      +  N    L +      +L+  +   F          
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNT-YLLTSIDLRFNKLT-KLSDDFRA------TT 511

Query: 242 LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
           L  L G+ L  ++     PT   N ++L    +R+ R   
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 40/289 (13%), Positives = 76/289 (26%), Gaps = 53/289 (18%)

Query: 25  TIPPHIGNLSFLV-------SLTSVAKSFYGTLPN------------------ELWQLQR 59
              P  G+   L         +T +  +F G                      +   +  
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 60  LRIVDLS----SGIIPGSLP--DDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELY 113
           +  +D S      +   +    D T    I +  ++ S N+I  +  +     + L  + 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 114 LDGNNLQ------AGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY--LPNLENLFLWQN 165
           L GN L                N+  +  I L  N L+          LP L  + L  N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225
           +     P    N+S +    +     +     T   +P  I     SL      S  +  
Sbjct: 524 SFSKF-PTQPLNSSTLKGFGIRNQRDA-QGNRTLREWPEGITLC-PSLTQLQIGSNDIRK 580

Query: 226 GIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL 274
            +                ++  L +  +       + +          L
Sbjct: 581 -VNEKI----------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 15/180 (8%)

Query: 22  LGGTIPPHIGNLSFLVSL-------TSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSL 74
           +           S L S+       T + K+              L  +DL    +    
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 75  PDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGN-----NLQAGLLPSVIF 129
            D  +     L  +  S+N      P +  N + L    +        N      P  I 
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 130 NSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
              ++  + +  N +   +   I  PN+  L +  N    I    +C   E  +  L  +
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI-TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 12/106 (11%), Positives = 21/106 (19%), Gaps = 18/106 (16%)

Query: 25  TIPPHIGNLSFLVSLTSVAK------SFYGTLPNELWQLQRLRIVDLS----SGIIPGSL 74
             P    N S L       +            P  +     L  + +       +     
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586

Query: 75  PDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQ 120
           P+        +  L    N         +    E     L  +  Q
Sbjct: 587 PN--------ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (250), Expect = 5e-24
 Identities = 49/328 (14%), Positives = 93/328 (28%), Gaps = 70/328 (21%)

Query: 13  TALSLPNLTLGGTIPPHIGNLSFLVSL---------TSVAKSFYGTLPNELWQLQRLRIV 63
           T + L N      +P  + +L  L SL          +  K+ +  L ++     +++I 
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 64  DLS----SGIIP----GSLPDDTS--------------GDCIMLRRLSFSFNKIRGWIPQ 101
            +                +                   G  + L  L   +N+I   IP+
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE-IPE 612

Query: 102 KIG-NLTELVELYLDGNNLQAGLLPSVIF--NSSNIQVIILYGNHLSG------HLRSSI 152
                  ++  L    N L+   +P++    +   +  +    N +              
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 153 YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLS-- 210
              N   + L  N +     +     S ++ + LS NL + +  N+      +  N    
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 211 ----------------------TSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248
                                   L N   S    S   P    N S +    +      
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ--R 787

Query: 249 LLGGDALEGQIPTCLANLTSLISLNLRS 276
              G+ +  Q PT +    SLI L + S
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.5 bits (227), Expect = 6e-21
 Identities = 44/320 (13%), Positives = 84/320 (26%), Gaps = 42/320 (13%)

Query: 2   GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLR 61
           GV     + RVT LSL      G +P  IG L+ L  L+    S   +      +     
Sbjct: 316 GVDLD-NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 62  IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGW---IPQKIGNLTELVELYLDGNN 118
           + +     I              L       + I       P K  +   L +  +    
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 119 LQAGLLPSVIFNSSNIQVIILYGNHLSG-------------------HLRSSIY-LPNLE 158
            +   +   I   + +Q+I    +  +                    +   S   L +L 
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 159 NLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGV--FPNSIGNLSTSLENF 216
           ++ L+       +PD + +  E+  L ++ N         +      +        ++ F
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG-PKIQIF 553

Query: 217 YASSCQLSG-GIPVGFGNLSNMIK--------------CNLESLFGLLLGGDALEGQIPT 261
           Y     L           +  +                     L  L L  + +E     
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPED 613

Query: 262 CLANLTSLISLNLRSIRLNS 281
             A    +  L     +L  
Sbjct: 614 FCAFTDQVEGLGFSHNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.8 bits (194), Expect = 1e-16
 Identities = 41/223 (18%), Positives = 69/223 (30%), Gaps = 18/223 (8%)

Query: 72  GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS 131
           G  P     +   +  LS +    +G +P  IG LTEL  L    ++             
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET-VSGRLFGDEE 370

Query: 132 SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
               +     + +  H +     Y   L    L Q+ +       +    + + + L   
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDT 428

Query: 190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKC--------- 240
               L  N       +I  L T L+  Y ++   +          +N             
Sbjct: 429 QIGNL-TNRITFISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486

Query: 241 --NLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
             NL+ L  + L       Q+P  L +L  L SLN+   R  S
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 25/208 (12%), Positives = 47/208 (22%), Gaps = 33/208 (15%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIR-------GWIPQKI 103
             + ++      V LS   I    P +       +  +  S N +               
Sbjct: 666 SMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 104 GNLTELVELYLDGNNLQAGLLPSVIFNS--SNIQVIILYGNHLS------GHLRSSIYLP 155
            N   L  + L  N L +  L      +    +  + +  N  S       +        
Sbjct: 725 KNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782

Query: 156 NLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLI---------------PNTSG 200
                    N +    P  I     +  L++  N    +                PN S 
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISI 842

Query: 201 VFPNSIGNLSTSLENFYASSCQLSGGIP 228
              +    +   +        Q   G  
Sbjct: 843 DVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 7e-13
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 17/192 (8%)

Query: 11  RVTALSLPNLTLGGTIPPHIGNLSFLVSL-------TSVAKSFYGTLPNELWQLQRLRIV 63
             + ++L    +           S + ++       TS+ ++              L  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 64  DLSSGIIPGSLPDD-TSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGN----- 117
           DL    +  SL DD  +     L  +  S+N      P +  N ++L    +        
Sbjct: 734 DLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 118 NLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICN 177
           N      P+ I    ++  + +  N +   +   +  P L  L +  N    I   S+C 
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL-TPQLYILDIADNPNISIDVTSVCP 849

Query: 178 ASEVTILELSKN 189
             E  +  L  +
Sbjct: 850 YIEAGMYVLLYD 861

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (250), Expect = 6e-24
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 16/261 (6%)

Query: 15  LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSL 74
           LS   L+  G         + L  L  ++ +   T+ +    L++L  +D     +    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYL-DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 75  PDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI 134
                     L  L  S    R         L+ L  L + GN+ Q   LP +     N+
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 135 QVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
             + L    L     ++   L +L+ L +  NN   +        + + +L+ S N    
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-- 530

Query: 194 LIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGD 253
                       + +  +SL     +    +                 ++    LL+  +
Sbjct: 531 -----MTSKKQELQHFPSSLAFLNLTQNDFACTCE------HQSFLQWIKDQRQLLVEVE 579

Query: 254 ALEGQIPTCLANLTSLISLNL 274
            +E   P+    +  ++SLN+
Sbjct: 580 RMECATPSDKQGM-PVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 48/268 (17%), Positives = 83/268 (30%), Gaps = 30/268 (11%)

Query: 16  SLPNLTLGGTIPPHIGNLSFLVSLTSVAKS---FYGTLPNELWQLQRLRIVDLSSGIIPG 72
           ++ + +L       + + S+      +      F      +L  L+RL       G    
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF- 341

Query: 73  SLPDDTSGDCIMLRRLSFSFNKI--RGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFN 130
                +  D   L  L  S N +  +G   Q     T L  L L  N +    + S    
Sbjct: 342 -----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLG 394

Query: 131 SSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188
              ++ +    ++L      S+   L NL  L +   +            S + +L+++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248
           N F           P+    L  +L     S CQL    P  F +LS+        L  L
Sbjct: 455 NSFQENFL------PDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSS--------LQVL 499

Query: 249 LLGGDALEGQIPTCLANLTSLISLNLRS 276
            +  +            L SL  L+   
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 8e-19
 Identities = 48/279 (17%), Positives = 81/279 (29%), Gaps = 21/279 (7%)

Query: 12  VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS----S 67
              L L    L         +   L  L                 L  L  + L+     
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 68  GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSV 127
            +  G+           L++L      +       IG+L  L EL +  N +Q+  LP  
Sbjct: 90  SLALGAF-----SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 128 IFNSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFLW----QNNLCGIVPDSICNASEVT 182
             N +N++ + L  N +     + +  L  +  L L      N +  I P +      + 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203

Query: 183 ILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL 242
            L L  N  S  +  T       +      L   + +   L          L N+     
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL-GEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 243 ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                 L   D     I      LT++ S +L S+ +  
Sbjct: 263 R-----LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.8 bits (192), Expect = 3e-16
 Identities = 51/263 (19%), Positives = 86/263 (32%), Gaps = 27/263 (10%)

Query: 22  LGGTIPPHIGNLSFLVSLTSVAKSFYGTLPN-ELWQLQRLRIVDLSSGIIPGSLPDDTSG 80
               I      L+ + S + V+ +          +  Q L +V+   G  P         
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-------- 321

Query: 81  DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA-GLLPSVIFNSSNIQVIIL 139
              +      +F   +G       +L  L  L L  N L   G      F +++++ + L
Sbjct: 322 -LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 140 YGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSI-CNASEVTILELSKNLFSCLIPNT 198
             N +     + + L  LE+L    +NL  +   S+  +   +  L++S         +T
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-------HT 433

Query: 199 SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ 258
              F      LS SLE    +                      L +L  L L    LE  
Sbjct: 434 RVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFT-------ELRNLTFLDLSQCQLEQL 485

Query: 259 IPTCLANLTSLISLNLRSIRLNS 281
            PT   +L+SL  LN+      S
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFS 508

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 42/254 (16%), Positives = 64/254 (25%), Gaps = 30/254 (11%)

Query: 31  GNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF 90
           G      +L    KS    L N   +  RL  +D     I              +   S 
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-----NCLTNVSSFSL 289

Query: 91  SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRS 150
               I     +          L L             + +   +      G +      S
Sbjct: 290 VSVTIER--VKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAF----S 342

Query: 151 SIYLPNLENLFLWQNNL--CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGN 208
            + LP+LE L L +N L   G    S    + +  L+LS N    +  N  G        
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-------- 394

Query: 209 LSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTS 268
               LE+       L                 +L +L  L +               L+S
Sbjct: 395 -LEQLEHLDFQHSNLKQMSEFSVF-------LSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 269 LISLNLRSIRLNST 282
           L  L +        
Sbjct: 447 LEVLKMAGNSFQEN 460

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 16/120 (13%)

Query: 155 PNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLE 214
            + +NL L  N L  +   S  +  E+ +L+LS+     +          +  +L + L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-------DGAYQSL-SHLS 79

Query: 215 NFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL 274
               +   +       F  LS++ K               L       + +L +L  LN+
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETN--------LASLENFPIGHLKTLKELNV 131

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 4e-23
 Identities = 52/279 (18%), Positives = 83/279 (29%), Gaps = 24/279 (8%)

Query: 10  RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS--- 66
             +T L+L +  L      +    S L SL     +     P    +L  L++++L    
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 67  -SGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLP 125
            S +   +        C  L  L    N I+            L+ L L  N L      
Sbjct: 85  LSQLSDKTF-----AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKL 138

Query: 126 SVIFNSSNIQVIILYGNHLSGHLRSSIY---LPNLENLFLWQNNLCGIVPDSICNASEVT 182
                  N+Q ++L  N +       +      +L+ L L  N +    P        + 
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198

Query: 183 ILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL 242
            L L+       +     +        +TS+ N   S+ QLS      F  L      NL
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELA-----NTSIRNLSLSNSQLSTTSNTTFLGLKWT---NL 250

Query: 243 ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
             L    L  + L        A L  L    L    +  
Sbjct: 251 TMLD---LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 56/273 (20%), Positives = 86/273 (31%), Gaps = 14/273 (5%)

Query: 15  LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSS-GIIPGS 73
            S+   +L          L  L  L        G   N    L  L+ + LS+      +
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 74  LPDDTSGDCIM--LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS 131
           L ++T        L  L+ + NKI          L  L  L L  N +   L        
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 132 SNIQVIILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCGI--VPDSICNASEVTILELSK 188
            NI  I L  N      R+S   +P+L+ L L +  L  +   P        +TIL+LS 
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248
           N  + +  +        +  L   LE        L+                 L  L  L
Sbjct: 490 NNIANINDDM-------LEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
            L  +  +        +L  L  ++L    LN+
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.0 bits (229), Expect = 4e-21
 Identities = 60/279 (21%), Positives = 97/279 (34%), Gaps = 26/279 (9%)

Query: 15  LSLPNLTLGGTIPPHIGNLSFLVSLT-SVAKSFYGTLPNELWQ---LQRLRIVDLS---- 66
           L++ +  + G        L  L  L+ S + +   TL NE +       L I++L+    
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 67  SGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQK-IGNLTELVELYLDGNNLQAGLLP 125
           S I   +           L  L    N+I   +  +    L  + E+YL  N     L  
Sbjct: 394 SKIESDAFSWLGH-----LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTR 447

Query: 126 SVIFNSSNIQVIILYGNHLSGHLRSS---IYLPNLENLFLWQNNLCGIVPDSICNASEVT 182
           +      ++Q ++L    L     S      L NL  L L  NN+  I  D +    ++ 
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 183 ILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL 242
           IL+L  N  + L  + +   P       + L      S          F +L        
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE------ 561

Query: 243 ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
             L  + LG + L     +   N  SL SLNL+   + S
Sbjct: 562 --LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.1 bits (219), Expect = 7e-20
 Identities = 53/277 (19%), Positives = 95/277 (34%), Gaps = 19/277 (6%)

Query: 15  LSLPNLTLGGTIPPHIGNLSFLVSLTSVAK-SFYGTLPNELWQLQRLRIVDLSSGIIPGS 73
           L L + ++             L++L  ++      T      QL+ L+ + LS+  I   
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITL-DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 74  LPDD-TSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF--- 129
             ++        L++L  S N+I+ + P     +  L  L+L+   L    L   +    
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG-PSLTEKLCLEL 219

Query: 130 NSSNIQVIILYGNHLSGHLRSSIY---LPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
            +++I+ + L  + LS    ++       NL  L L  NNL  +  DS     ++    L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 187 SKNLFSCLIPNTSGVFPN-SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESL 245
             N    L  ++     N    NL  S      S   L       F  L          L
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC--------L 331

Query: 246 FGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST 282
             L +  + + G        L +L  L+L +   +  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 34/192 (17%), Positives = 51/192 (26%), Gaps = 26/192 (13%)

Query: 51  PNELWQLQRLRIVDLSS------GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG 104
            N    +  L+ + L           P             L  L  S N I       + 
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPF-----QPLRNLTILDLSNNNIANINDDMLE 501

Query: 105 NLTELVELYLDGNNLQ-------AGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPN 156
            L +L  L L  NNL         G     +   S++ ++ L  N            L  
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 157 LENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENF 216
           L+ + L  NNL  +      N   +  L L KNL + +            G    +L   
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV-------FGPAFRNLTEL 614

Query: 217 YASSCQLSGGIP 228
                       
Sbjct: 615 DMRFNPFDCTCE 626

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 46/256 (17%), Positives = 86/256 (33%), Gaps = 43/256 (16%)

Query: 49  TLPNELWQLQR--LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNL 106
              + L    +     ++L S  +P   PD        L+ ++     +   +P  +   
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLME-LPDTMQQF 126

Query: 107 TELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY----------LPN 156
             L  L L  N L+A  LP+ I + + ++ + +        L   +           L N
Sbjct: 127 AGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 157 LENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENF 216
           L++L L    +  + P SI N   +  L++  +  S L          +I +L   LE  
Sbjct: 185 LQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSAL--------GPAIHHL-PKLEEL 234

Query: 217 YASSCQLSGGIPVGFGNLSNMIK----------------CNLESLFGLLLGGDALEGQIP 260
               C      P  FG  + + +                  L  L  L L G     ++P
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 261 TCLANLTSLISLNLRS 276
           + +A L +   + +  
Sbjct: 295 SLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 47/275 (17%), Positives = 83/275 (30%), Gaps = 36/275 (13%)

Query: 24  GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTS---- 79
           G+   H  + S   +L     +      + L Q QR    D +         +  +    
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 80  --------------GDCIM--LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGL 123
                          D        L      +    P +   L+ L  + +D   L    
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME-- 118

Query: 124 LPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVT 182
           LP  +   + ++ + L  N L   L +SI  L  L  L +        +P+ + +     
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 183 ILELSKNLFSCLIPNTS-GVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN 241
             +   NL S  +  T     P SI NL  +L++    +  LS  +     +L  + + +
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 242 LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
           L     L           P        L  L L+ 
Sbjct: 236 LRGCTAL--------RNYPPIFGGRAPLKRLILKD 262

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 48/234 (20%), Positives = 79/234 (33%), Gaps = 32/234 (13%)

Query: 25  TIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSS---GIIPGSLPDDTSGD 81
             P     LS L  + ++  +    LP+ + Q   L  + L+      +P S+       
Sbjct: 95  QFPDQAFRLSHLQHM-TIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-----AS 148

Query: 82  CIMLRRLSFSFNKIRGWIPQKIGN---------LTELVELYLDGNNLQAGLLPSVIFNSS 132
              LR LS         +P+ + +         L  L  L L+   +++  LP+ I N  
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQ 206

Query: 133 NIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELS-KNL 190
           N++ + +  + LS  L  +I +LP LE L L         P      + +  L L   + 
Sbjct: 207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 191 FSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLES 244
              L        P  I  L T LE      C     +P     L       +  
Sbjct: 266 LLTL--------PLDIHRL-TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 14/183 (7%)

Query: 25  TIPPHIGNLSFLV--------SLTSVAKSFY-GTLPNELWQLQRLRIVDLSSGIIPGSLP 75
            +P  I +L+ L          LT + +         E   L  L+ + L    I  SLP
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 76  DDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQ 135
                +   L+ L    + +   +   I +L +L EL L G        P +    + ++
Sbjct: 200 ASI-ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLK 256

Query: 136 VIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194
            +IL        L   I  L  LE L L        +P  I       I+ +  +L + L
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 195 IPN 197
             +
Sbjct: 317 DQH 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 43/258 (16%), Positives = 80/258 (31%), Gaps = 29/258 (11%)

Query: 45  SFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG 104
            F+    N       L+ +DL++  +   LP    G    L++L  S NK          
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVG-LSTLKKLVLSANKFENLCQISAS 322

Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG---HLRSSIYLPNLENLF 161
           N   L  L + GN  +  L    + N  N++ + L  + +            L +L++L 
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 162 LWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNT------------------SGVFP 203
           L  N    +  ++     ++ +L+L+          +                       
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 204 NSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCL 263
                L  +L++          G      +L       L  L  L+L    L        
Sbjct: 443 QLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQT-----LGRLEILVLSFCDLSSIDQHAF 496

Query: 264 ANLTSLISLNLRSIRLNS 281
            +L  +  ++L   RL S
Sbjct: 497 TSLKMMNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 9e-16
 Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 23/231 (9%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
              L   + L  + L S  I  S+          L+ L F  N I     + + +L +  
Sbjct: 122 FIPLHNQKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY---LPNLENLFLWQNNL 167
            L L+ N      +    F+S+  Q +   G      +   +    + +L        + 
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 168 CGIVPDSI--CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225
             I P          V  + L K+ F         +  N+     + L+    ++  LS 
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYF-------FNISSNTFHCF-SGLQELDLTATHLS- 291

Query: 226 GIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
            +P G   LS      L+ L    L  +  E       +N  SL  L+++ 
Sbjct: 292 ELPSGLVGLS-----TLKKLV---LSANKFENLCQISASNFPSLTHLSIKG 334

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 24/214 (11%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           IPG+LP+           L FSFN +          L  L  L L    +   +      
Sbjct: 27  IPGTLPNS-------TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQ 78

Query: 130 NSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188
           +   +  ++L  N L     +++     L++LF  Q  +  I    + N   +  L L  
Sbjct: 79  SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248
           N  S +          +       L+     +  +         +L      +L +L G 
Sbjct: 139 NHISSIKLPK---GFPT-----EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL-NLNGN 189

Query: 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNST 282
            + G      I     +     SLN    +    
Sbjct: 190 DIAG------IEPGAFDSAVFQSLNFGGTQNLLV 217

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 31/223 (13%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 60  LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119
              ++ S  ++P ++ + T    I L  L  +  +I         +   L  L L  N L
Sbjct: 35  TECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 120 QAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNA 178
              +  + +     ++ +      +S      +     LE+L+L  N++  I        
Sbjct: 94  I-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 179 SEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMI 238
            ++ +L+   N    L          +      +  +   +   ++ GI  G  + +   
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQA------TNLSLNLNGNDIA-GIEPGAFDSAVFQ 205

Query: 239 KCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
             N      LL+    L+       + + SL       +    
Sbjct: 206 SLNFGGTQNLLVIFKGLKN------STIQSLWLGTFEDMDDED 242

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 16/191 (8%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTEL 109
             +L  L  L+ ++LS      SL  +   +C  L  L  +F +++    Q    NL  L
Sbjct: 369 NLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY----LPNLENLFLWQN 165
             L L  + L       +      +Q + L GNH              L  LE L L   
Sbjct: 428 KVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225
           +L  I   +  +   +  ++LS N  +           +              +S  +S 
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA---LSHL------KGIYLNLASNHISI 537

Query: 226 GIPVGFGNLSN 236
            +P     LS 
Sbjct: 538 ILPSLLPILSQ 548

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 31/198 (15%), Positives = 68/198 (34%), Gaps = 29/198 (14%)

Query: 25  TIPPHIGNLSFLVSLTSVAKSF--YGTLPNELWQ-LQRLRIVDLSSGIIPGSLPDDTSGD 81
           T       L  L  L S+  S+    +L  E ++   +L ++DL+   +          +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 82  CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA--GLLPSVIFNSSNIQVIIL 139
             +L+ L+ S + +     Q    L  L  L L GN+         + +     +++++L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 140 YGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTI--------------- 183
               LS   + +   L  + ++ L  N L     +++ +   + +               
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLL 543

Query: 184 --------LELSKNLFSC 193
                   + L +N   C
Sbjct: 544 PILSQQRTINLRQNPLDC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 9/177 (5%)

Query: 49  TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108
            +      L+ L+ +D     +              L  L  S+   +         LT 
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL 167
           L  L + GN+ +   L +V  N++N+  + L    L          L  L+ L +  NNL
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224
             +          ++ L+ S N                + +   SL  F  ++  ++
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIE--------TSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 8e-15
 Identities = 37/213 (17%), Positives = 67/213 (31%), Gaps = 21/213 (9%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P          + +  SFN ++        N +EL  L L    ++  +      
Sbjct: 26  VPDDIPSS-------TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWH 77

Query: 130 NSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188
              ++  +IL GN +      S   L +LENL   +  L  +    I     +  L ++ 
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248
           N             P    NL T+L +   S   +          L        +    L
Sbjct: 138 NFIHSCKL------PAYFSNL-TNLVHVDLSYNYIQTITVNDLQFLREN----PQVNLSL 186

Query: 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
            +  + ++         +  L  L LR    +S
Sbjct: 187 DMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSS 218

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 44/270 (16%), Positives = 80/270 (29%), Gaps = 24/270 (8%)

Query: 16  SLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLP 75
           ++  ++L G    ++ ++       S++             L  L+ + L+      S  
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK 345

Query: 76  DDTSGDCIMLRRLSFSFNKIR--GWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSN 133
                    L  L  S N +   G           L  L L  N     ++ +       
Sbjct: 346 ---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEE 400

Query: 134 IQVIILYGNHLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF 191
           +Q +    + L      S +  L  L  L +   N            + +  L+++ N F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 192 SCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLG 251
                       N   N  T+L     S CQL       F  L       L+ L    + 
Sbjct: 461 KDNTL------SNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHR-----LQLLN---MS 505

Query: 252 GDALEGQIPTCLANLTSLISLNLRSIRLNS 281
            + L     +    L SL +L+    R+ +
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 44/235 (18%), Positives = 70/235 (29%), Gaps = 26/235 (11%)

Query: 48  GTLPNELWQLQRLRIVDLS----SGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI 103
           G++  +   L  L  +DLS    S     S  D        LR L  SFN     +    
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSD---LGTNSLRHLDLSFNGAII-MSANF 395

Query: 104 GNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFL 162
             L EL  L    + L+     S   +   +  + +   +           L +L  L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 163 WQNNLCGIVPDSI-CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC 221
             N+       ++  N + +T L+LSK     +              L   L+    S  
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV-------FDTL-HRLQLLNMSHN 507

Query: 222 QLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
            L       +  L         SL  L    + +E           SL   NL +
Sbjct: 508 NLLFLDSSHYNQLY--------SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 43/278 (15%), Positives = 81/278 (29%), Gaps = 25/278 (8%)

Query: 6   GVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDL 65
           G+    +    L               L+ + +++    S       ++ +  + + + +
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSI 314

Query: 66  SSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA-GLL 124
                   L    + D   L+ L+ + NK    I  K   L  L  L L  N L   G  
Sbjct: 315 IRC----QLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 125 PSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDS-ICNASEVTI 183
                 +++++ + L  N       + + L  L++L    + L  +   S   +  ++  
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 184 LELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLE 243
           L++S                     L TSL     +                     N  
Sbjct: 429 LDISYTNTKIDFDGI-------FLGL-TSLNTLKMAGNSFKDNTLSNVFA-------NTT 473

Query: 244 SLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
           +L  L L    LE         L  L  LN+    L  
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 38/240 (15%), Positives = 71/240 (29%), Gaps = 22/240 (9%)

Query: 51  PNELWQLQRLRIVDLS----SGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNL 106
                 L  L  + L+        PGS           L  L     K+       IG L
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSF-----SGLTSLENLVAVETKLASLESFPIGQL 127

Query: 107 TELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYL-----PNLENLF 161
             L +L +  N + +  LP+   N +N+  + L  N++     + +           +L 
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 162 LWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC 221
           +  N +  I  D      ++  L L  N  S  I  T       +      L   +    
Sbjct: 188 MSLNPIDFI-QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL-GEFKDER 245

Query: 222 QLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
            L    P     L ++      ++    L               L ++ +++L  + +  
Sbjct: 246 NLEIFEPSIMEGLCDV------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 40/256 (15%), Positives = 72/256 (28%), Gaps = 38/256 (14%)

Query: 50  LPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIM-------LRRLSFSFNKIRGWIPQK 102
           +   L  L  L +  L  G        +     IM       +     ++         K
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 103 IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFL 162
              L  +  + L G +++   L  V  +    Q + +    L      ++ LP L++L L
Sbjct: 281 FHCLANVSAMSLAGVSIKY--LEDVPKHFK-WQSLSIIRCQLKQF--PTLDLPFLKSLTL 335

Query: 163 WQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQ 222
             N     +         ++ L+LS+N  S     +             SL +   S   
Sbjct: 336 TMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT------NSLRHLDLSFNG 387

Query: 223 LSGGIPVGFGNLSNMIK-----------------CNLESLFGLLLGGDALEGQIPTCLAN 265
               +   F  L  +                    +LE L  L +     +         
Sbjct: 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 266 LTSLISLNLRSIRLNS 281
           LTSL +L +       
Sbjct: 447 LTSLNTLKMAGNSFKD 462

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 58/283 (20%), Positives = 94/283 (33%), Gaps = 60/283 (21%)

Query: 12  VTALSLPNLTLGGTIPPHIGNLSFLV----SLTSVAKSFYGTLPNELWQLQRLRIVDLSS 67
           +T L +P+  L  ++P     L  L      LTS        LP     L  L I     
Sbjct: 63  ITTLVIPDNNLT-SLPALPPELRTLEVSGNQLTS--------LPVLPPGLLELSIFSNPL 113

Query: 68  GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSV 127
             +P             L +L    N++   +P     L EL    +  N L +  LP++
Sbjct: 114 THLPALPSG--------LCKLWIFGNQLTS-LPVLPPGLQEL---SVSDNQLAS--LPAL 159

Query: 128 IFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELS 187
               S +  +  Y N L+  L        L+ L +  N L  + P        +  L   
Sbjct: 160 P---SELCKLWAYNNQLT-SLPMLP--SGLQELSVSDNQLASL-PTLPSE---LYKLWAY 209

Query: 188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNL------SNMIK-- 239
            N  + L        P     L    +    S  +L+  +PV    L       N +   
Sbjct: 210 NNRLTSL--------PALPSGL----KELIVSGNRLTS-LPVLPSELKELMVSGNRLTSL 256

Query: 240 -CNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                 L  L +  + L  ++P  L +L+S  ++NL    L+ 
Sbjct: 257 PMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 55/243 (22%), Positives = 83/243 (34%), Gaps = 51/243 (20%)

Query: 49  TLPNELWQ-LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLT 107
           TLP+ L   +  L I D +   +P   P+        LR L  S N++   +P     L 
Sbjct: 54  TLPDCLPAHITTLVIPDNNLTSLPALPPE--------LRTLEVSGNQLTS-LPVLPPGLL 104

Query: 108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL 167
           EL        +L A  LP      S +  + ++GN L+  L      P L+ L +  N L
Sbjct: 105 ELSIFSNPLTHLPA--LP------SGLCKLWIFGNQLT-SLPVLP--PGLQELSVSDNQL 153

Query: 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI 227
             + P        +  L    N  + L        P     L   L     S  QL+  +
Sbjct: 154 ASL-PALPSE---LCKLWAYNNQLTSL--------PMLPSGL-QEL---SVSDNQLA-SL 196

Query: 228 PVGFGNLSNMIKCN---------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR 278
           P     L  +   N            L  L++ G+ L   +P   + L     L +   R
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPSELK---ELMVSGNR 252

Query: 279 LNS 281
           L S
Sbjct: 253 LTS 255

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 37/188 (19%), Positives = 64/188 (34%), Gaps = 24/188 (12%)

Query: 106 LTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQN 165
                 L +  + L    LP  +    +I  +++  N+L+  L +    P L  L +  N
Sbjct: 39  NNGNAVLNVGESGLTT--LPDCLPA--HITTLVIPDNNLT-SLPALP--PELRTLEVSGN 91

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSG--VFPNSIGNLS---TSLENFYASS 220
            L  + P       E++I          L        +F N + +L      L+    S 
Sbjct: 92  QLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 150

Query: 221 CQLSGGIPVGFGNL------SNMIKC---NLESLFGLLLGGDALEGQIPTCLANLTSLIS 271
            QL+  +P     L      +N +         L  L +  + L   +PT  + L  L +
Sbjct: 151 NQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWA 208

Query: 272 LNLRSIRL 279
            N R   L
Sbjct: 209 YNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 22/179 (12%)

Query: 16  SLPNLTLGG----TIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP 71
            L  L        ++P     L  L     V+ +   +LP    +L+ L +       +P
Sbjct: 202 ELYKLWAYNNRLTSLPALPSGLKEL----IVSGNRLTSLPVLPSELKELMVSGNRLTSLP 257

Query: 72  GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS 131
                        L  LS   N++   +P+ + +L+    + L+GN L            
Sbjct: 258 MLPSG--------LLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSE--RTLQALR- 305

Query: 132 SNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNL 190
             I     Y   +     +    P      L       +VP      +      +    
Sbjct: 306 -EITSAPGYSGPIIRFDMAGASAPRETRA-LHLAAADWLVPAREGEPAPADRWHMFGQE 362

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 8/236 (3%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
            +    L++L++++L S   P ++  +   +   LR L    +KI    P     L  L 
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100

Query: 111 ELYLDGNNLQAGLLPSVIF-NSSNIQVIILYGNHLSG-HLRSSIY-LPNLENLFLWQNNL 167
           EL L    L   +L    F N   +  + L  N +   +L  S   L +L+++    N +
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 168 CGIVPDSICN--ASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225
             +    +       ++   L+ N     +    G   N   N+   LE    S    + 
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM--VLEILDVSGNGWTV 218

Query: 226 GIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLAN-LTSLISLNLRSIRLN 280
            I   F N  +  +     L   ++G       I     N    L   ++R + L+
Sbjct: 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 8e-12
 Identities = 41/243 (16%), Positives = 69/243 (28%), Gaps = 16/243 (6%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWI--PQKIGNLTE 108
                 L  LRI+DL S  I   L  D       L  L   F  +   +       NL  
Sbjct: 66  KEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSS---IYLPNLENLFLWQN 165
           L  L L  N +++  L       ++++ I    N +          +    L    L  N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 166 NLCGIVPDSICNASEV------TILELSKNLFSCLIPNTSGVFPNSIGNLS-TSLENFYA 218
           +L   V                 IL++S N ++  I        +     S     +   
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 219 SSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR 278
           +               + + + ++  L    L    +          L  L  LNL   +
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLD---LSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 279 LNS 281
           +N 
Sbjct: 302 INK 304

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 20/192 (10%)

Query: 52  NELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE 111
             +  +  +  + LS   +      + + + I L         I       +  +  L  
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL----YFLLRVPHLQI 430

Query: 112 LYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI------YLPNLENLFLWQN 165
           L L+ N   +         + +++ + L  N L     + +       L +L+ L+L  N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225
            L  + P    + + +  L L+ N  + L          S  +L  +LE    S  QL  
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVL----------SHNDLPANLEILDISRNQLLA 540

Query: 226 GIPVGFGNLSNM 237
             P  F +LS +
Sbjct: 541 PNPDVFVSLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 27/209 (12%)

Query: 77  DTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS---SN 133
           D SG+   +       N I       +     ++      +N++        F     S+
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD--PDQNTFAGLARSS 267

Query: 134 IQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS 192
           ++ + L    +          L +L+ L L  N +  I  ++      + +L LS NL  
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 193 CLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGG 252
            L  +     P         +         ++      F  L  +          L L  
Sbjct: 328 ELYSSNFYGLPK--------VAYIDLQKNHIAIIQDQTFKFLEKLQT--------LDLRD 371

Query: 253 DALEGQIPTCLANLTSLISLNLRSIRLNS 281
           +AL     T +  + S+  + L   +L +
Sbjct: 372 NAL-----TTIHFIPSIPDIFLSGNKLVT 395

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.0 bits (171), Expect = 9e-14
 Identities = 40/277 (14%), Positives = 86/277 (31%), Gaps = 54/277 (19%)

Query: 25  TIPPHIGNLSFLVSLTS--VAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDC 82
           +I   I N   L   +        Y    +   + ++  +   +       L +     C
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-----C 56

Query: 83  IM--LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILY 140
           ++     L  +   +   +P  +    ++  L +  N L +  LP +    ++++ +   
Sbjct: 57  LINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS--LPELP---ASLEYLDAC 108

Query: 141 GNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSG 200
            N LS  L       +L++L +  N L  + P+       +  +    N  + L      
Sbjct: 109 DNRLS-TLPELP--ASLKHLDVDNNQLTML-PELPAL---LEYINADNNQLTML------ 155

Query: 201 VFPNSIGNLS----------------TSLENFYASSCQLSGGIPVGFGNLSNMIKCNLES 244
             P    +L                  SLE    S+  L   +P       +      E+
Sbjct: 156 --PELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLES-LPAVPVRNHHS----EET 208

Query: 245 LFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                   + +   IP  + +L    ++ L    L+S
Sbjct: 209 EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 32/208 (15%), Positives = 74/208 (35%), Gaps = 42/208 (20%)

Query: 25  TIPPHIGNLSFLV----SLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSG 80
           ++P    +L +L      L++        LP     L+ L   D+ +  +   LP+  + 
Sbjct: 94  SLPELPASLEYLDACDNRLST--------LPELPASLKHL---DVDNNQLT-MLPELPA- 140

Query: 81  DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILY 140
              +L  ++   N++   +P+   +L     L +  N L    LP +     +++ + + 
Sbjct: 141 ---LLEYINADNNQLTM-LPELPTSLE---VLSVRNNQLTF--LPELP---ESLEALDVS 188

Query: 141 GNHLSGHLRSSI-YLPNLENLFLW---QNNLCGIVPDSICNASEVTILELSKNLFSCLIP 196
            N L   L +      + E   ++   + N    +P++I +      + L  N  S    
Sbjct: 189 TNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR-- 245

Query: 197 NTSGVFPNSIGNLSTSLENFYASSCQLS 224
                      +  T+  +++      S
Sbjct: 246 ------IRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 24/147 (16%), Positives = 40/147 (27%), Gaps = 16/147 (10%)

Query: 25  TIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIM 84
            +P    +L  L    SV  +    LP     L+ L   D+S+ ++  SLP         
Sbjct: 154 MLPELPTSLEVL----SVRNNQLTFLPELPESLEAL---DVSTNLL-ESLPA-VPVRNHH 204

Query: 85  LRR----LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILY 140
                       N+I   IP+ I +L     + L+ N L +        +    Q     
Sbjct: 205 SEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSS--RIRESLSQQTAQPDYHG 261

Query: 141 GNHLSGHLRSSIYLPNLENLFLWQNNL 167
                          +           
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 35/236 (14%), Positives = 78/236 (33%), Gaps = 22/236 (9%)

Query: 53  ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL 112
           EL     +  +  ++  I   +           + +  + NKI        G  + +  L
Sbjct: 94  ELLVGPSIETLHAANNNI-SRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVP 172
            L  N +       +  +S  ++ + L  N +   ++  +    L+ L L  N L  +  
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAFM-G 207

Query: 173 DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFG 232
               +A+ VT + L  N    +          ++     +LE+F         G    F 
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLI--------EKALRFS-QNLEHFDLRGNGFHCGTLRDFF 258

Query: 233 NLSNMIKCNLESLFGLLLGGDALEGQIP-------TCLANLTSLISLNLRSIRLNS 281
           + +  ++   +     L G +  E  +P        C  +L +  +  L ++  + 
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHH 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 33/236 (13%), Positives = 68/236 (28%), Gaps = 37/236 (15%)

Query: 57  LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116
             R +I  ++   +              ++ L  S N +       +   T+L  L L  
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 117 NNLQA----GLLP------------SVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENL 160
           N L        L               +    +I+ +    N++S  +  S      +N+
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSR-GQGKKNI 125

Query: 161 FLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASS 220
           +L  N +  +        S V  L+L  N    +       F     +   +LE+     
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV------NFAELAASS-DTLEHLNLQY 178

Query: 221 CQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
             +   +                 L  L L  + L   +     +   +  ++LR+
Sbjct: 179 NFIY-DVKGQ---------VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 34/228 (14%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
             +L    +L +++LSS ++     D        LR L  + N +     Q++     + 
Sbjct: 51  AADLAPFTKLELLNLSSNVL-YETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIE 102

Query: 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCG 169
            L+   NN+    +          + I L  N ++            ++ L L  N +  
Sbjct: 103 TLHAANNNISR--VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 170 I-VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228
           +   +   ++  +  L L  N    +                  L+    SS +L+  + 
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV----------FAKLKTLDLSSNKLA-FMG 207

Query: 229 VGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
             F + +         +  + L  + L   I   L    +L   +LR 
Sbjct: 208 PEFQSAAG--------VTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 36/194 (18%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 99  IPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY-LPNL 157
           I +   N        +  ++L+   L S+  ++ N++ + L GN LS    + +     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 158 ENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTS----GVFPNSIGNLS--- 210
           E L L  N L       + + S +  L+L+ N    L+   S        N+I  +S   
Sbjct: 61  ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118

Query: 211 -TSLENFYASSCQLSGGIPVGFGNLSNMIKCNLES--LFGLLLGGDALEGQIPTCLANLT 267
               +N Y ++ +++    +  G  S +   +L+   +  +               A+  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV---------NFAELAASSD 169

Query: 268 SLISLNLRSIRLNS 281
           +L  LNL+   +  
Sbjct: 170 TLEHLNLQYNFIYD 183

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 48/267 (17%), Positives = 101/267 (37%), Gaps = 41/267 (15%)

Query: 16  SLPNLTLGGTIPPHIGNLSFLVSLTSVAKSF--YGTLPNELWQLQRLRIVDLS----SGI 69
           +L  L L       I  L+ L  + S+        +  + L  +  L  + ++      +
Sbjct: 111 NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
            P         +   L  LS ++N+I    P  + +LT L       N +      + + 
Sbjct: 171 TP-------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD---ITPVA 218

Query: 130 NSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
           N + +  + +  N ++  L     L  L  L +  N +  I  +++ + +++ +L +  N
Sbjct: 219 NMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN 275

Query: 190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLL 249
             S +           + NL + L + + ++ QL        G L+     NL +LF   
Sbjct: 276 QISDISV---------LNNL-SQLNSLFLNNNQLGNEDMEVIGGLT-----NLTTLF--- 317

Query: 250 LGGDALEGQIPTCLANLTSLISLNLRS 276
           L  + +    P  LA+L+ + S +  +
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 44/247 (17%), Positives = 85/247 (34%), Gaps = 36/247 (14%)

Query: 49  TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108
           T  + L  L  LR + L+   I    P     +   +  L+   N         + N+T 
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLS-DLSPLSNMTG 156

Query: 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168
           L  L +  + ++     + I N +++  + L  N +   +     L +L     + N + 
Sbjct: 157 LNYLTVTESKVKD---VTPIANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQIT 212

Query: 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228
            I    + N + +  L++  N  + L P         + NL + L      + Q+S    
Sbjct: 213 DI--TPVANMTRLNSLKIGNNKITDLSP---------LANL-SQLTWLEIGTNQISD--I 258

Query: 229 VGFGNLSNMIK--------------CNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL 274
               +L+ +                 NL  L  L L  + L  +    +  LT+L +L L
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 275 RSIRLNS 281
               +  
Sbjct: 319 SQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 58/260 (22%), Positives = 97/260 (37%), Gaps = 33/260 (12%)

Query: 16  SLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYG-TLPNELWQLQRLRIVDLSSGIIPGSL 74
                 L       +     L S+T +  +         +  L  L  ++L+   I    
Sbjct: 23  EGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS 82

Query: 75  PDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI 134
           P     + + L  L    NKI       + NLT L ELYL+ +N+      S + N + +
Sbjct: 83  P---LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD---ISPLANLTKM 134

Query: 135 QVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194
             + L  NH    L     +  L  L + ++ +  + P  I N +++  L L+ N    +
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192

Query: 195 IPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDA 254
            P         + +L TSL  F A   Q++   PV           N+  L  L +G + 
Sbjct: 193 SP---------LASL-TSLHYFTAYVNQITDITPVA----------NMTRLNSLKIGNNK 232

Query: 255 LEGQIPTCLANLTSLISLNL 274
           +    P  LANL+ L  L +
Sbjct: 233 ITDLSP--LANLSQLTWLEI 250

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 53  ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL 112
            L  L  L         I    P     +   L  L    NKI    P  + NL++L  L
Sbjct: 194 PLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 248

Query: 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVP 172
            +  N +      + + + + ++++ +  N +S  +     L  L +LFL  N L     
Sbjct: 249 EIGTNQISD---INAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 173 DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224
           + I   + +T L LS+N  + + P         + +L + +++   ++  + 
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRP---------LASL-SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 29/197 (14%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
              L+     I    P    +L E +   L   ++             +I  +++ G  +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV 56

Query: 145 SGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN 204
           +  ++   YL NLE L L  N +  I P  + N  ++T L +  N  + +          
Sbjct: 57  A-SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA-------- 105

Query: 205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA 264
            + NL T+L   Y +   +S   P    NL+      + SL    LG +     +   L+
Sbjct: 106 -LQNL-TNLRELYLNEDNISDISP--LANLT-----KMYSLN---LGANHNLSDLSP-LS 152

Query: 265 NLTSLISLNLRSIRLNS 281
           N+T L  L +   ++  
Sbjct: 153 NMTGLNYLTVTESKVKD 169

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 37/247 (14%), Positives = 77/247 (31%), Gaps = 20/247 (8%)

Query: 25  TIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIM 84
                + +LS L +L             EL     +  +  ++  I   +          
Sbjct: 71  YETLDLESLSTLRTL-----DLNNNYVQELLVGPSIETLHAANNNI-SRVSCSR---GQG 121

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
            + +  + NKI        G  + +  L L  N +       +  +S  ++ + L  N +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 145 SGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN 204
              ++  +    L+ L L  N L  +      +A+ VT + L  N    +          
Sbjct: 182 Y-DVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI--------EK 231

Query: 205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA 264
           ++     +LE+F         G    F + +  ++   +     L G +  E  +PT   
Sbjct: 232 ALRFS-QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 265 NLTSLIS 271
                  
Sbjct: 291 YGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 37/236 (15%)

Query: 57  LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116
             R +I  ++   +              ++ L  S N +       +   T+L  L L  
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 117 NNLQA----GLLP------------SVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENL 160
           N L        L               +    +I+ +    N++S  +  S      +N+
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSR-GQGKKNI 125

Query: 161 FLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASS 220
           +L  N +  +        S V  L+L  N    +             +   +LE+     
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------AELAASS-DTLEHLNLQY 178

Query: 221 CQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
             +   +                 L  L L  + L   +     +   +  ++LR+
Sbjct: 179 NFIY-DVKGQ---------VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 25/233 (10%), Positives = 61/233 (26%), Gaps = 18/233 (7%)

Query: 49  TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108
                      L  ++L    I   +          L+ L  S NK+  ++  +  +   
Sbjct: 160 NFAELAASSDTLEHLNLQYNFI-YDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168
           +  + L  N L    +   +  S N++   L GN          +  N     + +  + 
Sbjct: 216 VTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228
            +   +    +  T+             +    F + +  L        +     +  + 
Sbjct: 274 KLTGQNEEECTVPTLGHYGAY----CCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 229 VGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
               N +            +    +     I        + I+L  +   L+ 
Sbjct: 330 CERENQAR--------QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 34/228 (14%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
             +L    +L +++LSS ++     D        LR L  + N +     Q++     + 
Sbjct: 51  AADLAPFTKLELLNLSSNVL-YETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIE 102

Query: 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCG 169
            L+   NN+    +          + I L  N ++            ++ L L  N +  
Sbjct: 103 TLHAANNNISR--VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 170 I-VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228
           +   +   ++  +  L L  N    +              +   L+    SS +L+  + 
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQV----------VFAKLKTLDLSSNKLA-FMG 207

Query: 229 VGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
             F + +         +  + L  + L   I   L    +L   +LR 
Sbjct: 208 PEFQSAAG--------VTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 21/191 (10%), Positives = 49/191 (25%), Gaps = 3/191 (1%)

Query: 25  TIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIM 84
            + P   + + +  + S+  +    +   L   Q L   DL           D       
Sbjct: 205 FMGPEFQSAAGVTWI-SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 85  LRRLSF-SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF-NSSNIQVIILYGN 142
           ++ ++  +  K+ G   ++    T          +L A     +I        ++   G+
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 143 HLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVF 202
                            +   +     ++            LE  K      + N     
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383

Query: 203 PNSIGNLSTSL 213
               G L  ++
Sbjct: 384 AELDGTLQQAV 394

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.0 bits (156), Expect = 9e-12
 Identities = 50/270 (18%), Positives = 95/270 (35%), Gaps = 47/270 (17%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTEL 109
            +E      L  ++L+  I+  ++      +   LR L    N+++  IP  +   L+ L
Sbjct: 49  QDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNL 106

Query: 110 VELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNN 166
            +L +  N +    L   +F    N++ + +  N L  ++       L +LE L L + N
Sbjct: 107 TKLDISENKIVI--LLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCN 163

Query: 167 LCGIVPDSICNASEVTILELSKNLFSCLIPN------------------TSGVFPNSIGN 208
           L  I  +++ +   + +L L     + +                        + PN +  
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 209 LSTSLENFYASSCQLSGGIPVG-FGNLS---------NMIKC-------NLESLFGLLLG 251
           L+  L +   + C L+  +P     +L          N I          L  L  + L 
Sbjct: 224 LN--LTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 252 GDALEGQIPTCLANLTSLISLNLRSIRLNS 281
           G  L    P     L  L  LN+   +L +
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 39/232 (16%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P +T       R L    N+I+     +  +   L EL L+ N + A  +    F
Sbjct: 26  VPEGIPTET-------RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGAF 76

Query: 130 NS-SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
           N+  N++ + L  N L   +   +   L NL  L + +N +  ++     +   +  LE+
Sbjct: 77  NNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 187 SKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNL---------SN 236
             N    +              L  SLE      C L+  IP     +L           
Sbjct: 136 GDNDLVYISHRA-------FSGL-NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL 186

Query: 237 MIKC-------NLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
            I          L  L  L +        +        +L SL++    L +
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 25/224 (11%)

Query: 57  LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLD 115
           L  L+ +++    +   +          L +L+     +   IP +   +L  L+ L L 
Sbjct: 127 LYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184

Query: 116 GNNLQAGLLPSVIFNS-SNIQVIILYG-NHLSGHLRSSIYLPNLENLFLWQNNLCGIVPD 173
             N+ A  +    F     ++V+ +    +L     + +Y  NL +L +   NL  +   
Sbjct: 185 HLNINA--IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242

Query: 174 SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FG 232
           ++ +   +  L LS N  S +      +       L   L+       QL+  +    F 
Sbjct: 243 AVRHLVYLRFLNLSYNPISTI---EGSML----HEL-LRLQEIQLVGGQLA-VVEPYAFR 293

Query: 233 NLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
            L+      L  L    + G+ L     +   ++ +L +L L S
Sbjct: 294 GLN-----YLRVLN---VSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 5/145 (3%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
                +L RL+++++S      ++  +       L  LS +   +       + +L  L 
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 111 ELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSG-HLRSSIYLPNLENLFLWQNNLC 168
            L L  N +    +   + +    +Q I L G  L+     +   L  L  L +  N L 
Sbjct: 252 FLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 169 GIVPDSICNASEVTILELSKNLFSC 193
            +      +   +  L L  N  +C
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLAC 334

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 53/272 (19%), Positives = 96/272 (35%), Gaps = 48/272 (17%)

Query: 8   PHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSS 67
             R+   L L NL L  ++P    +L  L      + +    LP     L+ L + + + 
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPPHLESL----VASCNSLTELPELPQSLKSLLVDNNNL 123

Query: 68  GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSV 127
             +    P        +L  L  S N++   +P+ + N + L  + +D N+L+   LP +
Sbjct: 124 KALSDLPP--------LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKK--LPDL 171

Query: 128 IFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELS 187
                +++ I    N L   L     LP L  ++   N+L  + PD   +   +  +   
Sbjct: 172 P---PSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKKL-PDLPLS---LESIVAG 223

Query: 188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247
            N+   L           + NL   L   YA +  L   +P    +L  +      ++  
Sbjct: 224 NNILEEL---------PELQNL-PFLTTIYADNNLLKT-LPDLPPSLEAL------NVRD 266

Query: 248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRL 279
             L        +P    +LT L         L
Sbjct: 267 NYLT------DLPELPQSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 46/294 (15%), Positives = 89/294 (30%), Gaps = 68/294 (23%)

Query: 15  LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSL 74
               NLT    +P    N+       +    +    P    + + + +  L   +     
Sbjct: 18  RHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ-- 72

Query: 75  PDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI 134
                        L  +   +   +P+   +L     L    N+L    LP +  +  ++
Sbjct: 73  ----------AHELELNNLGLSS-LPELPPHLE---SLVASCNSLTE--LPELPQSLKSL 116

Query: 135 QVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL 194
            V       LS         P LE L +  N L  +    + N+S + I+++  N    L
Sbjct: 117 LVDNNNLKALSD------LPPLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKL 168

Query: 195 IPNTSGVFPNSIGNLS------------------TSLENFYASSCQLSGGIPVGFGNL-- 234
                   P+   +L                     L   YA +  L   +P    +L  
Sbjct: 169 --------PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLSLES 219

Query: 235 ----SNMIK-----CNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRL 279
               +N+++      NL  L  +    + L+  +P    +L +L   +     L
Sbjct: 220 IVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 43/245 (17%), Positives = 79/245 (32%), Gaps = 40/245 (16%)

Query: 53  ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL 112
           EL  L  L  +   +  +   LPD      + L  +    N +      ++ NL  L  +
Sbjct: 190 ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE--ELPELQNLPFLTTI 242

Query: 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVP 172
           Y D N L+   LP +     +++ + +  N+L+  L       +L  L + +N   G+  
Sbjct: 243 YADNNLLKT--LPDLP---PSLEALNVRDNYLT-DLPELP--QSLTFLDVSENIFSGL-S 293

Query: 173 DSICNASEVTILELSKNLFSCLIPNTSG------------VFPNSIGNLSTSLENFYASS 220
           +   N   +  L  S N    L                    P         LE   AS 
Sbjct: 294 ELPPN---LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR----LERLIASF 346

Query: 221 CQLSGGIPVGFGNLS--NMIKCNLESLFGLL--LGGDALEGQIPTCLANLTSLISLNLRS 276
             L+  +P    NL   ++    L     +   +    +   +        +L  L++ +
Sbjct: 347 NHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405

Query: 277 IRLNS 281
             L  
Sbjct: 406 NPLRE 410

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 36/217 (16%), Positives = 72/217 (33%), Gaps = 39/217 (17%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFN-------------S 131
           L+      + +   +P +  N+    E Y   +  +    P                   
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWE-RNAPPGNGEQREMAVSRLRDCLD 70

Query: 132 SNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF 191
                + L    LS  L      P+LE+L    N+L  + P+   +   + +   +    
Sbjct: 71  RQAHELELNNLGLS-SLPELP--PHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKAL 126

Query: 192 SCLIPNTS--GVFPNSIGNLS-----TSLENFYASSCQLSGGIPVGFGNL------SNMI 238
           S L P     GV  N +  L      + L+     +  L   +P    +L      +N +
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQL 185

Query: 239 K-----CNLESLFGLLLGGDALEGQIPTCLANLTSLI 270
           +      NL  L  +    ++L+ ++P    +L S++
Sbjct: 186 EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV 221

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 49/214 (22%), Positives = 78/214 (36%), Gaps = 21/214 (9%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           IP +LP  T       + L  SFN +R        +  EL  L L    +Q  +      
Sbjct: 22  IPDNLPFST-------KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQ 73

Query: 130 NSSNIQVIILYGNHLSGHLRSSIY-LPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188
           + S++  +IL GN +      +   L +L+ L   + NL  +    I +   +  L ++ 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL 248
           NL        S   P    NL T+LE+   SS ++          L  M   NL     L
Sbjct: 134 NLI------QSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS----L 182

Query: 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNST 282
            L  + +    P     +  L  L LR+   +  
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN 215

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 51/230 (22%), Positives = 84/230 (36%), Gaps = 26/230 (11%)

Query: 54  LWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELY 113
            +  Q L +V+   G  P             L+RL+F+ NK      +   +L  L  L 
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKS-------LKRLTFTSNKGGNAFSEV--DLPSLEFLD 353

Query: 114 LDGNNLQA-GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVP 172
           L  N L   G      F +++++ + L  N +     + + L  LE+L    +NL  +  
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 173 DSI-CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGF 231
            S+  +   +  L++S            G+F        +SLE    +            
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFN---GIFNGL-----SSLEVLKMAGNSFQENFLPDI 465

Query: 232 GNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                     L +L  L L    LE   PT   +L+SL  LN+ S +L S
Sbjct: 466 FT-------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 43/236 (18%), Positives = 71/236 (30%), Gaps = 13/236 (5%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
                 L  L  + L+   I  SL          L++L      +       IG+L  L 
Sbjct: 69  DGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLW---QNN 166
           EL +  N +Q+  LP    N +N++ + L  N +     + +  L  +  L L      N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 167 LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLE-NFYASSCQLSG 225
               +         +  L L  N  S  +           G     L    + +   L  
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVM--KTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 226 GIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                   L N+           L   D     I      LT++ S +L S+ +  
Sbjct: 246 FDKSALEGLCNLTIEEFR-----LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 42/217 (19%), Positives = 81/217 (37%), Gaps = 19/217 (8%)

Query: 16  SLPNLTLGGTIPPHIGNLSFLVSLTSV-----AKSFYGTLPNELWQLQRLRIVDLSSGII 70
           SL  LT       +  +   L SL  +       SF G      +    L+ +DLS   +
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 71  PGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVIF 129
             ++  +  G    L  L F  + ++      +  +L  L+ L +   + +      +  
Sbjct: 386 -ITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN 442

Query: 130 NSSNIQVIILYGNHLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILELS 187
             S+++V+ + GN    +    I+  L NL  L L Q  L  + P +  + S + +L ++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224
            N             P+ I +  TSL+  +  +    
Sbjct: 503 SNQLK--------SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 49  TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108
           T+ +    L++L  +D     +              L  L  S    R         L+ 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNN 166
           L  L + GN+ Q   LP +     N+  + L    L   L  +    L +L+ L +  N 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQ 505

Query: 167 LCGIVPDSICNASEVTILELSKNLFSC 193
           L  +        + +  + L  N + C
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWDC 532

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 42/284 (14%), Positives = 72/284 (25%), Gaps = 40/284 (14%)

Query: 25  TIPPHIGNLSFLVSLT-SVAKSFYGTLPNELWQLQRLRIVDLSSGIIPG-----SLPDDT 78
            I P       L  LT          +   +  L  L +  L  G               
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 79  SGDCIMLRRLSFSFNKIRGWIPQKIG---NLTELVELYLDGNNLQAGLLPSVIFNSSNIQ 135
                 L    F    +  ++   I     LT +    L    ++   +    +N    Q
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQ 307

Query: 136 VIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLI 195
            + L           ++ L +L+ L    N       +   +   +  L+LS+N  S   
Sbjct: 308 HLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFK- 362

Query: 196 PNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIK---------------- 239
               G    S     TSL+    S   +   +   F  L  +                  
Sbjct: 363 ----GCCSQSDFGT-TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 240 -CNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST 282
             +L +L  L +               L+SL  L +        
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 6/165 (3%)

Query: 49  TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLT 107
           T+ +    L++L  +D     +              L  L  S    R      I   L+
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLS 150

Query: 108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG-HLRSSIYLPNLENLFLWQNN 166
            L  L + GN+ Q   LP +     N+  + L    L      +   L +L+ L +  NN
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

Query: 167 LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLST 211
              +        + + +L+ S N              +   +L+ 
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTS---KKQELQHFPSSLAF 252

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 46/215 (21%), Positives = 76/215 (35%), Gaps = 26/215 (12%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P           RL    NK++         LT+L +L L  N L      S   
Sbjct: 22  VPTGIPSSA-------TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74

Query: 130 -NSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSI-CNASEVTILELS 187
             +++++ + L  N +     + + L  LE+L    +NL  +   S+  +   +  L++S
Sbjct: 75  FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134

Query: 188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLSNMIKCNLESLF 246
                      +G+F        +SLE    +            F  L      NL  L 
Sbjct: 135 HTHTRVA---FNGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELR-----NLTFLD 181

Query: 247 GLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
              L    LE   PT   +L+SL  LN+      S
Sbjct: 182 ---LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 34/233 (14%)

Query: 49  TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108
           +  + L  L  L+ +   + +           +   L RL  S NK+       +  LT 
Sbjct: 147 SDISALSGLTSLQQLSFGNQVTDLK----PLANLTTLERLDISSNKVSD--ISVLAKLTN 200

Query: 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168
           L  L    N +      + +   +N+  + L GN L   + +   L NL +L L  N + 
Sbjct: 201 LESLIATNNQISD---ITPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQIS 256

Query: 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228
            + P  +   +++T L+L  N  S + P         +  L T+L N   +  QL    P
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISP---------LAGL-TALTNLELNENQLEDISP 304

Query: 229 VGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
           +           NL++L  L L  + +    P  +++LT L  L   + +++ 
Sbjct: 305 IS----------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 31/234 (13%)

Query: 49  TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108
                L  L  L  +DL++  I    P         L  L    N+I    P  +  LT 
Sbjct: 234 KDIGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTA 288

Query: 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC 168
           L  L L+ N L+     S I N  N+  + LY N++S  +     L  L+ LF + N + 
Sbjct: 289 LTNLELNENQLED---ISPISNLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFYNNKVS 344

Query: 169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP 228
            +   S+ N + +  L    N  S L P         + NL T +     +    +    
Sbjct: 345 DV--SSLANLTNINWLSAGHNQISDLTP---------LANL-TRITQLGLNDQAWTNAPV 392

Query: 229 VGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST 282
               N+S  I   ++++ G L+         P  +++  S    ++     + T
Sbjct: 393 NYKANVS--IPNTVKNVTGALI--------APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 34/224 (15%)

Query: 53  ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL 112
            L  L +L  + +++  I    P     +   L  L+   N+I    P  + NLT L  L
Sbjct: 85  PLKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139

Query: 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVP 172
            L  N +      S +   +++Q +          L+    L  LE L +  N +  I  
Sbjct: 140 ELSSNTISD---ISALSGLTSLQQLSFGNQVTD--LKPLANLTTLERLDISSNKVSDI-- 192

Query: 173 DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFG 232
             +   + +  L  + N  S + P         +G L T+L+    +  QL         
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP---------LGIL-TNLDELSLNGNQLKD--IGTLA 240

Query: 233 NLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
           +L+N        L  L L  + +    P  L+ LT L  L L +
Sbjct: 241 SLTN--------LTDLDLANNQISNLAP--LSGLTKLTELKLGA 274

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 37/203 (18%)

Query: 93  NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI 152
             I          L E ++  L   N+          +   +  +      +   +    
Sbjct: 12  TPINQIFT--DTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK-SIDGVE 65

Query: 153 YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS 212
           YL NL  +    N L  I P  + N +++  + ++ N  + + P         + NL T+
Sbjct: 66  YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---------LANL-TN 113

Query: 213 LENFYASSCQLSGGIPVGFGNLSNMIK--------------CNLESLFGLLLGGDALEGQ 258
           L      + Q++   P    NL+N+ +                L SL  L  G    +  
Sbjct: 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-- 169

Query: 259 IPTCLANLTSLISLNLRSIRLNS 281
               LANLT+L  L++ S +++ 
Sbjct: 170 -LKPLANLTTLERLDISSNKVSD 191

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 51/216 (23%), Positives = 78/216 (36%), Gaps = 27/216 (12%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           IP +LP  T       + L  SFN +R        +  EL  L L    +Q   +    +
Sbjct: 22  IPDNLPFST-------KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAY 72

Query: 130 NS-SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
            S S++  +IL GN +   L       L +L+ L   + NL  +    I +   +  L +
Sbjct: 73  QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 187 SKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLSNMIKCNLESL 245
           + NL           F N      T+LE+   SS ++   I       L  M   NL   
Sbjct: 132 AHNLIQSFKLP--EYFSN-----LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS-- 181

Query: 246 FGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
             L L  + +   I         L  L L + +L S
Sbjct: 182 --LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS 214

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 73  SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVIFNS 131
           SL +   G    L+ L+ + N I+ +   +   NLT L  L L  N +Q+  +       
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRV 171

Query: 132 -SNIQVII----LYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
              + ++     L  N ++     +     L+ L L  N L  +        + +  + L
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

Query: 187 SKNLFSC 193
             N + C
Sbjct: 232 HTNPWDC 238

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 8e-11
 Identities = 48/244 (19%), Positives = 84/244 (34%), Gaps = 30/244 (12%)

Query: 57  LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116
           L   +IV   +  +   LP         +  L+ +  +I             + +LY+  
Sbjct: 50  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 117 NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDS 174
           N ++  L P V  N   + V++L  N LS  L   I    P L  L +  NNL  I  D+
Sbjct: 109 NAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 175 ICNASEVTILELSKNLFSCLIPNTSGVFP---------NSIGNLS--TSLENFYASSCQL 223
               + +  L+LS N  + +      + P         N +  L+   ++E   AS   +
Sbjct: 167 FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223

Query: 224 SGGIPVGFGNL------SNMIK-----CNLESLFGLLLGGDALEGQIPTCLANLTSLISL 272
           +         L       N +       N   L  + L  + LE  +      +  L  L
Sbjct: 224 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283

Query: 273 NLRS 276
            + +
Sbjct: 284 YISN 287

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 32/231 (13%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
                   +L  + +S+  +   + DDT      L+ L  S N++   +   +  +  L 
Sbjct: 140 RGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLF 195

Query: 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI 170
              +  N L      S +     ++ +    N ++  +R  +    L  L L  NNL   
Sbjct: 196 HANVSYNLL------STLAIPIAVEELDASHNSIN-VVRGPV-NVELTILKLQHNNL--T 245

Query: 171 VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG 230
               + N   +  ++LS N    ++ +           +   LE  Y S+ +L   + + 
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEKIMYHP-------FVKM-QRLERLYISNNRLVA-LNLY 296

Query: 231 FGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
              +          L  L L  + L   +         L +L L    + +
Sbjct: 297 GQPIPT--------LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
           L  +  S+N++   +      +  L  LY+  N L A  L         ++V+ L  NHL
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHL 313

Query: 145 SGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
               R+      LENL+L  N++  +   +      +  L LS N + C
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDC 359

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 40/234 (17%), Positives = 80/234 (34%), Gaps = 14/234 (5%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
            ++L +   L+ + L+S  I  ++ +D+      L  L  S+N +          L+ L 
Sbjct: 69  NSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127

Query: 111 ELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNL 167
            L L GN  +  L  + +F+  + +Q++ +        ++      L  LE L +  ++L
Sbjct: 128 FLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI 227
               P S+ +   V+ L L       L          +       L +    +   S   
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILL---LEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 228 PVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                +L          +    L       Q+   L  ++ L+ L     +L S
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLF------QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 40/213 (18%), Positives = 65/213 (30%), Gaps = 47/213 (22%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           IP  L +         + L  S N+I       +     L  L L  N +    +    F
Sbjct: 46  IPSGLTEAV-------KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSF 96

Query: 130 NSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
           +S                      L +LE+L L  N L  +        S +T L L  N
Sbjct: 97  SS----------------------LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134

Query: 190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLSNMIKCNLESLFGL 248
            +  L    + +F     +  T L+     +      I    F  L+      LE L   
Sbjct: 135 PYKTLGE--TSLF-----SHLTKLQILRVGNMDTFTKIQRKDFAGLT-----FLEELE-- 180

Query: 249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
            +    L+   P  L ++ ++  L L   +   
Sbjct: 181 -IDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 42/177 (23%), Positives = 66/177 (37%), Gaps = 19/177 (10%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVI 128
           +P SLP  T         L  S N +     +     LT L  L L  N+L    + S  
Sbjct: 33  VPQSLPSYT-------ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEA 83

Query: 129 FNS-SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILE 185
           F    N++ + L  NHL   L   +   L  LE L L+ N++  +  ++  + +++  L 
Sbjct: 84  FVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142

Query: 186 LSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL 242
           LS+N  S        +  +    L   L     SS +L          L   +K  L
Sbjct: 143 LSQNQISRFPV---ELIKD-GNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 12/145 (8%)

Query: 57  LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLD 115
           L  L  + LS   +   +  +       LR L  S N +   + + +  +L  L  L L 
Sbjct: 63  LTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLY 120

Query: 116 GNNLQAGLLPSVIFNS-SNIQVIILYGNHLS----GHLRSSIYLPNLENLFLWQNNLCGI 170
            N++    +    F   + +Q + L  N +S      ++    LP L  L L  N L  +
Sbjct: 121 NNHIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 171 VPDSICN--ASEVTILELSKNLFSC 193
               +    A     L L  N   C
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLEC 203

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 50/249 (20%), Positives = 87/249 (34%), Gaps = 30/249 (12%)

Query: 57  LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116
           L   +IV   +  +   LP         +  L+ +  +I             + +LY+  
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 117 NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDS 174
           N ++  L P V  N   + V++L  N LS  L   I    P L  L +  NNL  I  D+
Sbjct: 103 NAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 175 ICNASEVTILELSKNLFSCLIPNTSGVFP---------NSIGNLS--TSLENFYASSCQL 223
               + +  L+LS N  + +      + P         N +  L+   ++E   AS   +
Sbjct: 161 FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217

Query: 224 SGGIPVGFGNL------SNMIK-----CNLESLFGLLLGGDALEGQIPTCLANLTSLISL 272
           +         L       N +       N   L  + L  + LE  +      +  L  L
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

Query: 273 NLRSIRLNS 281
            + + RL +
Sbjct: 278 YISNNRLVA 286

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 45/253 (17%), Positives = 87/253 (34%), Gaps = 37/253 (14%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
              L   +++ +++L+   I   +          +++L   FN IR   P    N+  L 
Sbjct: 62  AALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 111 ELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNL 167
            L L+ N+L +  LP  IF++   +  + +  N+L   +         +L+NL L  N L
Sbjct: 121 VLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL 177

Query: 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTS----GVFPNSIGNLS----TSLENFYAS 219
             +    I +   +    +S NL S L    +        NSI  +       L      
Sbjct: 178 THVDLSLIPS---LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 234

Query: 220 SCQLSGGIPVGFGNLSNMIK----------------CNLESLFGLLLGGDALEGQIPTCL 263
              L+        N   +++                  ++ L  L +  + L   +    
Sbjct: 235 HNNLTD-TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 264 ANLTSLISLNLRS 276
             + +L  L+L  
Sbjct: 292 QPIPTLKVLDLSH 304

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 45/241 (18%), Positives = 75/241 (31%), Gaps = 38/241 (15%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
           P+    +  L ++ L    +  SLP     +   L  LS S N +           T L 
Sbjct: 110 PHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 111 ELYLDGNNL---QAGLLPSV------------IFNSSNIQVIILYGNHLSGHLRSSIYLP 155
            L L  N L      L+PS+            +     ++ +    N ++  +R  +   
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV-NV 226

Query: 156 NLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLEN 215
            L  L L  NNL       + N   +  ++LS N    +       F          LE 
Sbjct: 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI---MYHPFVKM-----QRLER 276

Query: 216 FYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLR 275
            Y S+ +L   + +    +          L  L L  + L   +         L +L L 
Sbjct: 277 LYISNNRLVA-LNLYGQPIPT--------LKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

Query: 276 S 276
            
Sbjct: 327 H 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 80  GDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIIL 139
            +   L  +  S+N++   +      +  L  LY+  N L A  L         ++V+ L
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDL 302

Query: 140 YGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
             NHL    R+      LENL+L  N++  +   +      +  L LS N + C
Sbjct: 303 SHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDC 353

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 34/212 (16%), Positives = 75/212 (35%), Gaps = 26/212 (12%)

Query: 73  SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS- 131
            +  +   DC+    +         +   +   L     +    + ++   LP+ + +S 
Sbjct: 12  CIDSNLQYDCV-FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK--LPAALLDSF 68

Query: 132 SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
             ++++ L    +   + +    Y   ++ L++  N +  + P    N   +T+L L +N
Sbjct: 69  RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLL 249
             S L     G+F N     +  L     S+  L          + +       SL  L 
Sbjct: 128 DLSSL---PRGIFHN-----TPKLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQ 171

Query: 250 LGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
           L  + L   +   L+ + SL   N+    L++
Sbjct: 172 LSSNRLT-HVD--LSLIPSLFHANVSYNLLST 200

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 23/198 (11%)

Query: 51  PNELWQLQRLRIVDLSS---GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNL 106
                 L++L+ + +S      IP +LP         L  L    N+IR  +P+ +   L
Sbjct: 95  EKAFSPLRKLQKLYISKNHLVEIPPNLPSS-------LVELRIHDNRIR-KVPKGVFSGL 146

Query: 107 TELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNN 166
             +  + + GN L+        F+   +  + +    L+  +   +    L  L L  N 
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL-PETLNELHLDHNK 204

Query: 167 LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGG 226
           +  I  + +   S++  L L  N    +   +       +  L  +L   +  + +LS  
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGS-------LSFL-PTLRELHLDNNKLS-R 255

Query: 227 IPVGFGNLSNMIKCNLES 244
           +P G  +L  +    L +
Sbjct: 256 VPAGLPDLKLLQVVYLHT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 46/240 (19%), Positives = 77/240 (32%), Gaps = 37/240 (15%)

Query: 60  LRIVDLSSG---IIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116
           LR+V  S      +P  +  DT         L    N I          L  L  L L  
Sbjct: 35  LRVVQCSDLGLKAVPKEISPDT-------TLLDLQNNDISELRKDDFKGLQHLYALVLVN 87

Query: 117 NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSIC 176
           N +   +          +Q + +  NHL   +  ++   +L  L +  N +  +      
Sbjct: 88  NKISK-IHEKAFSPLRKLQKLYISKNHLV-EIPPNL-PSSLVELRIHDNRIRKVPKGVFS 144

Query: 177 NASEVTILELSKN-LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNL 234
               +  +E+  N L +       G F          L     S  +L+G IP      L
Sbjct: 145 GLRNMNCIEMGGNPLENSGFE--PGAFDGL------KLNYLRISEAKLTG-IPKDLPETL 195

Query: 235 ------SNMIK-------CNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                  N I+            L+ L LG + +       L+ L +L  L+L + +L+ 
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 39/231 (16%), Positives = 84/231 (36%), Gaps = 26/231 (11%)

Query: 51  PNELWQLQRLRIVDLSS---GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNL 106
           P     L +L  + LS      +P  +P         L+ L    N+I   + + +   L
Sbjct: 93  PGAFAPLVKLERLYLSKNQLKELPEKMPKT-------LQELRVHENEIT-KVRKSVFNGL 144

Query: 107 TELVELYLDGNNLQAGLLPSVIF-NSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQN 165
            +++ + L  N L++  + +  F     +  I +   +++  +   +  P+L  L L  N
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-PPSLTELHLDGN 202

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225
            +  +   S+   + +  L LS N  S +   +       + N    L   + ++ +L  
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-------LANT-PHLRELHLNNNKLV- 253

Query: 226 GIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
            +P G  +   +    L +     +G +      P       S   ++L S
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP--PGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 11/114 (9%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
           L +L  SFN I       + N   L EL+L+ N L    +P  + +   IQV+ L+ N++
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNI 275

Query: 145 S-------GHLRSSIYLPNLENLFLWQNNL--CGIVPDSICNASEVTILELSKN 189
           S            +    +   + L+ N +    I P +         ++L   
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 35/229 (15%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           IP  LP +          L F   K+R           +L ++ +  N++   +   V  
Sbjct: 24  IPSDLPRNA-------IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 130 NSSNIQVI-ILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
           N   +  I I   N+L  ++       LPNL+ L +    +  +      ++ +  +L++
Sbjct: 77  NLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 187 SKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLS---------N 236
             N+    I        NS   LS      + +   +   I    F             N
Sbjct: 136 QDNINIHTIE------RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNN 188

Query: 237 MIKC-------NLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR 278
            ++               L +    +       L NL  L + +  +++
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 57  LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLD 115
           L +L  + +        +  +   +   L+ L  S   I+  +P     +  + V L + 
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQ 136

Query: 116 GNNLQAGLLPSVIFN--SSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNN-LCGIVP 172
            N      +    F   S    ++ L  N +     S+     L+ L L  NN L  +  
Sbjct: 137 DNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 173 DSICNASEVTILELSKNLFSCLIPNT 198
           D    AS   IL++S+     L    
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYG 221

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 36/264 (13%), Positives = 79/264 (29%), Gaps = 33/264 (12%)

Query: 49  TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108
            + +    L  L+ + + +      +          L  L      +R +  Q + ++ +
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173

Query: 109 LVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSG-HLRSSIYLPNLENLFLWQNN 166
           +  L L  +      L  +  +  S+++ + L   +L+               +      
Sbjct: 174 IHHLTLHLSESA--FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 167 LCGIVPDS----------ICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENF 216
              +  +S          I   SEV   + + N      P+ S V        + ++   
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 217 YASSCQLSGGIPVGFGNLSN------------MIKC----NLESLFGLLLGGDALEGQI- 259
           +     L   +   +  L              ++ C    +L+SL  L L  + +  +  
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 260 --PTCLANLTSLISLNLRSIRLNS 281
               C     SL +L L    L S
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRS 375

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 37/232 (15%), Positives = 77/232 (33%), Gaps = 34/232 (14%)

Query: 56  QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLD 115
           +   +R + +    +              ++R++   +K+         +L  L  L L 
Sbjct: 284 ETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 116 GNNLQAGLLPSVIF--NSSNIQVIILYGNHLSGHLRSSIY----LPNLENLFLWQNNLCG 169
            N +    L +        ++Q ++L  NHL   ++ +      L NL +L + +N    
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHP 401

Query: 170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV 229
           + PDS     ++  L LS      +    + +           LE    S+  L      
Sbjct: 402 M-PDSCQWPEKMRFLNLSSTGIRVV---KTCIPQT--------LEVLDVSNNNLD----- 444

Query: 230 GFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                       L  L  L +  + L+  +P   +    L+ + +   +L S
Sbjct: 445 -------SFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKS 487

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 25/214 (11%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           IP  L          ++ L  SFNKI       +     L  L L  + +   +     +
Sbjct: 20  IPSGLTAA-------MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFY 71

Query: 130 NSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGI-VPDSICNASEVTILELS 187
           +  +++ + L  NHLS    S    L +L+ L L  N    + V     N + +  L + 
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247
                  I             L TSL      +  L         ++ +        +  
Sbjct: 132 NVETFSEIR------RIDFAGL-TSLNELEIKALSLRNYQSQSLKSIRD--------IHH 176

Query: 248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
           L L        +      L+S+  L LR   L  
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 22/127 (17%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS------------- 131
           L  L  S N     +P       ++  L L    ++   + + I  +             
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV--VKTCIPQTLEVLDVSNNNLDS 445

Query: 132 -----SNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
                  +Q + +  N L   L  +   P L  + + +N L  +        + +  + L
Sbjct: 446 FSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

Query: 187 SKNLFSC 193
             N + C
Sbjct: 505 HTNPWDC 511

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 35/245 (14%), Positives = 76/245 (31%), Gaps = 28/245 (11%)

Query: 52  NELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIR----GWIPQKIGNLT 107
           + L  ++ L + D +      S P         +++L+F  + +       + + +  + 
Sbjct: 193 DILSSVRYLELRDTNLARFQFS-PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 108 ELVELYLDGNNLQ-----AGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIY------LPN 156
           EL E+  D   L            V+     ++ + +   H+               L  
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 157 LENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENF 216
           ++ + +  + +  +      +   +  L+LS+NL        S            SL+  
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK-----GAWPSLQTL 366

Query: 217 YASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
             S   L   +      L  +   NL SL    +  +     +P        +  LNL S
Sbjct: 367 VLSQNHLR-SMQKTGEILLTLK--NLTSLD---ISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 277 IRLNS 281
             +  
Sbjct: 420 TGIRV 424

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 42/222 (18%), Positives = 77/222 (34%), Gaps = 44/222 (19%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +  +T       R L+   N+I+        +L  L  L L  N+++   +    F
Sbjct: 58  VPDGISTNT-------RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAF 108

Query: 130 NS-SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
           N  +N+  + L+ N L+  + +    YL  L+ L+L  N +  I   +      +  L+L
Sbjct: 109 NGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 187 SKNLFSCLIPNTSGVFPNSIGNLS-------TSLENFYASSCQLSGGIPVGFGNLSNMIK 239
            +                 +  +S       ++L     + C L   IP     L     
Sbjct: 168 GEL--------------KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLI---- 207

Query: 240 CNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
             L+ L    L G+ L    P     L  L  L +   ++  
Sbjct: 208 -KLDELD---LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 49  TLPNELWQ-LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLT 107
           ++P+  +  +  LR +DL        + +        LR L+ +   +R  IP  +  L 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLI 207

Query: 108 ELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSG-HLRSSIYLPNLENLFLWQN 165
           +L EL L GN+L A  +    F    ++Q + +  + +      +   L +L  + L  N
Sbjct: 208 KLDELDLSGNHLSA--IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSC 193
           NL  +  D       +  + L  N ++C
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 50/231 (21%), Positives = 83/231 (35%), Gaps = 28/231 (12%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
            N    L+ L I+ LS   I  ++          L  L    N++          L++L 
Sbjct: 81  VNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139

Query: 111 ELYLDGNNLQAGLLPSVIFNS-SNIQVIILYG-NHLSGHLRSSI--YLPNLENLFLWQNN 166
           EL+L  N +++  +PS  FN   +++ + L     LS ++       L NL  L L   N
Sbjct: 140 ELWLRNNPIES--IPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCN 196

Query: 167 LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGG 226
           L  I   ++    ++  L+LS N  S +     G F          L+  +    Q+   
Sbjct: 197 LREI--PNLTPLIKLDELDLSGNHLSAI---RPGSFQGL-----MHLQKLWMIQSQIQV- 245

Query: 227 IPVG-FGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
           I    F NL +     L  +    L  + L          L  L  ++L  
Sbjct: 246 IERNAFDNLQS-----LVEIN---LAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 24/177 (13%)

Query: 108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQN 165
           +  ++     NL+   +P  I   +N +++ L+ N +   ++ +   +L +LE L L +N
Sbjct: 44  QFSKVICVRKNLRE--VPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN 98

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225
           ++  I   +    + +  LEL  N  + +    +G F        + L+  +  +  +  
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTI---PNGAFVY-----LSKLKELWLRNNPIE- 149

Query: 226 GIPVG-FGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
            IP   F  +      +L  L   L     L          L++L  LNL    L  
Sbjct: 150 SIPSYAFNRIP-----SLRRLD--LGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 42/221 (19%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P +T       R L+   N I+        +L  L  L L  N+++  +      
Sbjct: 69  VPQGIPSNT-------RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFN 120

Query: 130 NSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELS 187
             +++  + L+ N L+  + S    YL  L  L+L  N +  I   +      +  L+L 
Sbjct: 121 GLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 188 KNLFSCLIPNTSGVFPNSIGNLS-------TSLENFYASSCQLSGGIPVGFGNLSNMIKC 240
           +                 +  +S        +L+      C +   +P     L      
Sbjct: 180 EL--------------KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLV----- 218

Query: 241 NLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
            LE L    + G+      P     L+SL  L + + +++ 
Sbjct: 219 GLEELE---MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 26/230 (11%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
            +    L  L ++ L    I   +          L  L    N +          L++L 
Sbjct: 92  ADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150

Query: 111 ELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNL 167
           EL+L  N +++  +PS  FN   ++  + L       ++       L NL+ L L   N+
Sbjct: 151 ELWLRNNPIES--IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI 227
             +   ++     +  LE+S N F  + P +          L +SL+  +  + Q+S  I
Sbjct: 209 KDM--PNLTPLVGLEELEMSGNHFPEIRPGS-------FHGL-SSLKKLWVMNSQVSL-I 257

Query: 228 PVG-FGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
               F  L++     L  L    L  + L          L  L+ L+L  
Sbjct: 258 ERNAFDGLAS-----LVELN---LAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 49  TLPNELWQ-LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLT 107
           ++P+  +  +  L  +DL        + +        L+ L+     I+  +P  +  L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLV 218

Query: 108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG-HLRSSIYLPNLENLFLWQNN 166
            L EL + GN+    + P      S+++ + +  + +S     +   L +L  L L  NN
Sbjct: 219 GLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 167 LCGIVPDSICNASEVTILELSKNLFSC 193
           L  +  D       +  L L  N ++C
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 24/177 (13%)

Query: 108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQN 165
           +  ++      L    +P  I   SN + + L  N++   +++    +L +LE L L +N
Sbjct: 55  QFSKVVCTRRGLSE--VPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN 109

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG 225
           ++  I   +    + +  LEL  N  + +    SG F        + L   +  +  +  
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVI---PSGAFEY-----LSKLRELWLRNNPIE- 160

Query: 226 GIPVG-FGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
            IP   F  +      +L  L   L     LE         L +L  LNL    +  
Sbjct: 161 SIPSYAFNRVP-----SLMRLD--LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 41/207 (19%), Positives = 67/207 (32%), Gaps = 21/207 (10%)

Query: 73  SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS 132
            +P  +   C  L  L    N +          L  L +L L  N     + P+      
Sbjct: 46  HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 133 NIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNL 190
            +  + L    L   L   +   L  L+ L+L  N L  +  D+  +   +T L L  N 
Sbjct: 106 RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164

Query: 191 FSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLSNMIKCNLESLFGLL 249
            S +       F         SL+       +++  +    F +L       L +L+   
Sbjct: 165 ISSVPE---RAFRG-----LHSLDRLLLHQNRVA-HVHPHAFRDLG-----RLMTLY--- 207

Query: 250 LGGDALEGQIPTCLANLTSLISLNLRS 276
           L  + L       LA L +L  L L  
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 49  TLPNELWQ-LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLT 107
           ++    +  L RL  + L    +   L          L+ L    N ++        +L 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 108 ELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSG-HLRSSIYLPNLENLFLWQN 165
            L  L+L GN + +  +P   F    ++  ++L+ N ++  H  +   L  L  L+L+ N
Sbjct: 154 NLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 166 NLCGIVPDSICNASEVTILELSKNLFSC 193
           NL  +  +++     +  L L+ N + C
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 26/214 (12%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P  +       +R+    N+I             L  L+L  N L   +  +   
Sbjct: 26  VPVGIPAAS-------QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFT 77

Query: 130 NSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELS 187
             + ++ + L  N     +  +    L  L  L L +  L  + P      + +  L L 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG 247
            N    L       F +       +L + +    ++S        ++       L SL  
Sbjct: 138 DNALQAL---PDDTFRDL-----GNLTHLFLHGNRIS--------SVPERAFRGLHSLDR 181

Query: 248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
           LLL  + +    P    +L  L++L L +  L++
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 21/242 (8%)

Query: 56  QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRG-WIPQKI-GNLTELVELY 113
            L  L I+ L        L          L  L+ +   + G  +       LT L  L 
Sbjct: 77  GLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 114 LDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSIY---LPNLENLFLWQNNLCG 169
           L  NN++  + P+  F +     V+ L  N +       +      +   L L    L  
Sbjct: 136 LRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194

Query: 170 IVPDSICNA--------SEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC 221
           +    +           + +T L+LS N F   +      F ++I            S  
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA---KRFFDAIAGTKIQSLILSNSYN 251

Query: 222 QLSGGIPVGFGNLSNMIKCNLE--SLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRL 279
             S      F +  N     LE   +    L    +   + +  ++ T L  L L    +
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311

Query: 280 NS 281
           N 
Sbjct: 312 NK 313

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 60  LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119
           ++  DLS   I  +L          L +L+ + N+I          LT L++L L  N L
Sbjct: 277 VKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335

Query: 120 QAGLLPSVIFNS-SNIQVIILYGNHLSG-HLRSSIYLPNLENLFLWQNNLCGIVPDSICN 177
            +  + S +F +   ++V+ L  NH+     +S + LPNL+ L L  N L  +       
Sbjct: 336 GS--IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393

Query: 178 ASEVTILELSKNLFSC 193
            + +  + L  N + C
Sbjct: 394 LTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 45/256 (17%), Positives = 77/256 (30%), Gaps = 41/256 (16%)

Query: 38  SLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRG 97
            L +     +  L      LQ +    L                   +  L  S N  + 
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGW------EKCGNPFKNTSITTLDLSGNGFKE 226

Query: 98  WIPQKI---GNLTELVELYLDGNNLQAGLLPSVIFNS-----------SNIQVIILYGNH 143
            + ++       T++  L L  +           F             S ++   L  + 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 144 LSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGV 201
           +   L  S+  +  +LE L L QN +  I  ++    + +  L LS+N    +    S +
Sbjct: 287 IF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI---DSRM 342

Query: 202 FPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLSNMIKCNLESLFGLLLGGDALEGQIP 260
           F N        LE    S   +   +    F  L N        L  L L  + L+    
Sbjct: 343 FEN-----LDKLEVLDLSYNHIR-ALGDQSFLGLPN--------LKELALDTNQLKSVPD 388

Query: 261 TCLANLTSLISLNLRS 276
                LTSL  + L +
Sbjct: 389 GIFDRLTSLQKIWLHT 404

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 6e-08
 Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 30/197 (15%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
           +         I+   P       E ++  L   ++            ++I  II   + +
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDI 55

Query: 145 SGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN 204
              ++   YLPN+  LFL  N L  I P  + N   +  L L +N    L          
Sbjct: 56  K-SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS-------- 104

Query: 205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA 264
            + +L   L++       +S        +++ +   +L  L  L LG + +     T L+
Sbjct: 105 -LKDL-KKLKSLSLEHNGIS--------DINGL--VHLPQLESLYLGNNKIT--DITVLS 150

Query: 265 NLTSLISLNLRSIRLNS 281
            LT L +L+L   +++ 
Sbjct: 151 RLTKLDTLSLEDNQISD 167

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 30/190 (15%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
             + +     +   + Q    L  + ++  + +++++      I    N+  + L GN L
Sbjct: 23  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKL 77

Query: 145 SGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN 204
           +  ++    L NL  LFL +N +  +    + +  ++  L L  N  S +          
Sbjct: 78  T-DIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING-------- 126

Query: 205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA 264
            + +L   LE+ Y  + +++        +++ +    L  L  L L  + +   +P  LA
Sbjct: 127 -LVHL-PQLESLYLGNNKIT--------DITVL--SRLTKLDTLSLEDNQISDIVP--LA 172

Query: 265 NLTSLISLNL 274
            LT L +L L
Sbjct: 173 GLTKLQNLYL 182

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 28/202 (13%)

Query: 29  HIGNLSFLVSLTSVAKSFYGTLPNE------LWQLQRLRIVDLSSGIIPGSLPDDTSG-- 80
            +  + +L ++T +  +      N+      L  L+ L  + L    I      D S   
Sbjct: 57  SVQGIQYLPNVTKLFLNG-----NKLTDIKPLTNLKNLGWLFLDENKI-----KDLSSLK 106

Query: 81  DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILY 140
           D   L+ LS   N I       + +L +L  LYL  N +      +V+   + +  + L 
Sbjct: 107 DLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLE 161

Query: 141 GNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSG 200
            N +S  +     L  L+NL+L +N++  +   ++     + +LEL          N   
Sbjct: 162 DNQIS-DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 201 VF--PNSIGNLSTSLENFYASS 220
               PN++ N   SL      S
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIIS 240

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 45/240 (18%), Positives = 89/240 (37%), Gaps = 22/240 (9%)

Query: 7   VPHRRVTALSLPNLTLGGTIPPHIGNLSFL----VSLTSVAKSFYGTLPNELW-QLQRLR 61
           V H  V   S+ N+ L G +     + S      +S+  V    +G   + ++     + 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 62  IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA 121
           I + +       +             L FS N +   + +  G+LTEL  L L  N L+ 
Sbjct: 304 IKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 122 -GLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNA 178
              +  +     ++Q + +  N +S   +     +  +L +L +  N L   +   +   
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--P 420

Query: 179 SEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLSNM 237
             + +L+L  N             P  +  L  +L+    +S QL   +P G F  L+++
Sbjct: 421 PRIKVLDLHSNKIK--------SIPKQVVKL-EALQELNVASNQLK-SVPDGIFDRLTSL 470

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 39/179 (21%), Positives = 57/179 (31%), Gaps = 44/179 (24%)

Query: 62  IVDLSSG---IIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN 118
           +VD S      +P  L   T         L+ S N I       I +L++L  L +  N 
Sbjct: 4   LVDRSKNGLIHVPKDLSQKT-------TILNISQNYISELWTSDILSLSKLRILIISHNR 56

Query: 119 LQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNA 178
           +Q   L   +F                           LE L L  N L  I      N 
Sbjct: 57  IQY--LDISVFKF----------------------NQELEYLDLSHNKLVKISCHPTVN- 91

Query: 179 SEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNM 237
             +  L+LS N F  L       F    GN+ + L+    S+  L     +   +L+  
Sbjct: 92  --LKHLDLSFNAFDALPIC--KEF----GNM-SQLKFLGLSTTHLEKSSVLPIAHLNIS 141

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 85  LRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH 143
           L++L  S N +     +        L+ L +  N L   +   +      I+V+ L+ N 
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNK 432

Query: 144 LSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
           +    +  + L  L+ L +  N L  +        + +  + L  N + C
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 28/201 (13%), Positives = 63/201 (31%), Gaps = 6/201 (2%)

Query: 85  LRRLSFSFNKIRGW-IPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH 143
           L+ L  SFN      I ++ GN+++L  L L   +L+   +  +   + +  +++L   +
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 144 LSGHLRSS---IYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSG 200
                          +L  +F        I+  S+   + + +  +   L          
Sbjct: 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 201 VFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIP 260
           +      N   S  N   ++ + +    +    L         S+  + L G        
Sbjct: 212 ILAKLQTNPKLS--NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 261 TCLANLTSLISLNLRSIRLNS 281
               +L +L    + S     
Sbjct: 270 YSGTSLKALSIHQVVSDVFGF 290

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 85  LRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGN 142
           LRR+  S N+I   +       L  L  L L GN +    LP  +F    ++Q+++L  N
Sbjct: 58  LRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNAN 114

Query: 143 HLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
            ++  LR   +  L NL  L L+ N L  I   +      +  + L++N F C
Sbjct: 115 KIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           IP +LP+           +    N I+   P       +L  + L  N +    L    F
Sbjct: 26  IPTNLPETI-------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDAF 76

Query: 130 NS-SNIQVIILYGNHLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
               ++  ++LYGN ++  L  S++  L +L+ L L  N +  +  D+  +   + +L L
Sbjct: 77  QGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135

Query: 187 SKN 189
             N
Sbjct: 136 YDN 138

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 27/195 (13%)

Query: 11  RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGII 70
            +  L+L NL + GT PP +   +                      L  L + ++S    
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGP-------------------DLNILNLRNVSWATR 136

Query: 71  PGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL--QAGLLPSVI 128
              L +        L+ LS +      +  +++     L  L L  N    + GL+ ++ 
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196

Query: 129 FNS-SNIQVIILYGNHLS----GHLRSSIYLPNLENLFLWQNNLCGIVPDSIC-NASEVT 182
                 +QV+ L    +          +     L+ L L  N+L        C   S++ 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 183 ILELSKNLFSCLIPN 197
            L LS      +   
Sbjct: 257 SLNLSFTGLKQVPKG 271

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 30/167 (17%), Positives = 50/167 (29%), Gaps = 14/167 (8%)

Query: 9   HRRVTALSLPNLTLGGTIPPHIGNLSFLVSL-------TSVAKSFYGTLPNELWQLQRLR 61
              +  LS+            +     L +L                  P +   LQ L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 62  IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQ 120
           + +       G      +   + L+ L  S N +R           ++L  L L    L+
Sbjct: 208 LRNAGMETPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 121 AGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL 167
              +P  +   + + V+ L  N L     S   LP + NL L  N  
Sbjct: 267 Q--VPKGLP--AKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 10/186 (5%)

Query: 60  LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQ---KIGNLTELVELYLDG 116
           L  +                   + L+RL+    +I   I     ++  ++ L EL L+ 
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 117 NNLQ-AGLLPSVIFNSSNIQVIILYGNHLSGHLR-----SSIYLPNLENLFLWQNNLCGI 170
             +      P +     ++ ++ L     +              P L+ L + Q +    
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 171 VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG 230
             + +     ++ L+LS N         S + P     L   L    A     SG     
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV-LALRNAGMETPSGVCSAL 223

Query: 231 FGNLSN 236
                 
Sbjct: 224 AAARVQ 229

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 33/141 (23%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 56  QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYL 114
           +L+ L  + ++   +  +LP       + L  L    N+++  +P ++  +LT+L  L L
Sbjct: 83  ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSL 140

Query: 115 DGNNLQAGLLPSVIFNS-SNIQVIILYGNHL-SGHLRSSIYLPNLENLFLWQNNLCGIVP 172
             N LQ+  LP  +F+  ++++ + LY N L      +   L  L+ L L  N L  +  
Sbjct: 141 GYNELQS--LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198

Query: 173 DSICNASEVTILELSKNLFSC 193
            +  +  ++ +L+L +N + C
Sbjct: 199 GAFDSLEKLKMLQLQENPWDC 219

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 39/215 (18%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           IP ++P DT       ++L    NK+     +    LT+L  LYL+ N LQ   LP+ IF
Sbjct: 31  IPSNIPADT-------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIF 81

Query: 130 NS-SNIQVIILYGNHLSGHLRSSI------YLPNLENLFLWQNNLCGIVPDSICNASEVT 182
               N++ + +  N L      ++       L NL  L L +N L  + P    + +++T
Sbjct: 82  KELKNLETLWVTDNKL-----QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136

Query: 183 ILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLSNMIKCN 241
            L L  N    L     GVF      L TSL+     + QL   +P G F  L+      
Sbjct: 137 YLSLGYNELQSL---PKGVF----DKL-TSLKELRLYNNQLK-RVPEGAFDKLTE----- 182

Query: 242 LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
              L  L L  + L+        +L  L  L L+ 
Sbjct: 183 ---LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 85  LRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGN 142
           LR+++FS NKI   I +      + + E+ L  N L+   +   +F    +++ ++L  N
Sbjct: 59  LRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN--VQHKMFKGLESLKTLMLRSN 115

Query: 143 HLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
            ++  + +  +  L ++  L L+ N +  + P +      ++ L L  N F+C
Sbjct: 116 RIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 15/193 (7%)

Query: 7   VPHRRVTALSLPNLTLGGTIPPHIGN-----LSFLVSLTSVAKSFYGTLPNELWQLQRLR 61
              R V  L++ NLT+   I           L  L+      + F  +          + 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 62  IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA 121
           I  LS    P  +             L+F+ N     + Q    L  L  L L  N L+ 
Sbjct: 333 IKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391

Query: 122 GLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-----YLPNLENLFLWQNNLCGIVPDSIC 176
                V   + N+  +      L+     +      +  ++  L L  N L G V   + 
Sbjct: 392 --FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL- 448

Query: 177 NASEVTILELSKN 189
              +V +L+L  N
Sbjct: 449 -PPKVKVLDLHNN 460

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 21/269 (7%)

Query: 16  SLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS-SGIIPGSL 74
            L       T  P + N++     T+   S           ++ L I +L+ +  I    
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 75  PDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS-SN 133
              +      L                      E+    L  ++     +  V   S S+
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF--IHMVCPPSPSS 354

Query: 134 IQVIILYGNHLSG-HLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS 192
              +    N  +    +    L  L+ L L +N L             ++ LE      +
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLN 413

Query: 193 CLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGG 252
            L    S  +  +    + S+     SS  L+G +           +C    +  L L  
Sbjct: 414 SL---NSHAYDRTCA-WAESILVLNLSSNMLTGSVF----------RCLPPKVKVLDLHN 459

Query: 253 DALEGQIPTCLANLTSLISLNLRSIRLNS 281
           + +   IP  + +L +L  LN+ S +L S
Sbjct: 460 NRIM-SIPKDVTHLQALQELNVASNQLKS 487

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  LP  T       + LS S N I       I  L+EL  L L  N +++  L   +F
Sbjct: 46  VPKDLPPRT-------KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVF 96

Query: 130 NS-SNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL 167
               +++ + +  N L  ++ S   + +L +L L  N+ 
Sbjct: 97  LFNQDLEYLDVSHNRLQ-NI-SCCPMASLRHLDLSFNDF 133

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 85  LRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGN 142
           L  L  SFN++   +P      L EL ELYL GN L+   LP  +      ++ + L  N
Sbjct: 102 LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT--LPPGLLTPTPKLEKLSLANN 158

Query: 143 HLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
           +L+  L + +   L NL+ L L +N+L  I P     +  +    L  N + C
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 39/178 (21%), Positives = 57/178 (32%), Gaps = 23/178 (12%)

Query: 63  VDLSS---GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119
           V+        +P  LP DT         L  S N +  +    +   T L +L LD   L
Sbjct: 15  VNCDKRNLTALPPDLPKDT-------TILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 120 QAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNAS 179
                  V      +  + L  N L         LP L  L +  N L  +   ++    
Sbjct: 68  TK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 180 EVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLSN 236
           E+  L L  N    L P   G+           LE    ++  L+  +P G    L N
Sbjct: 125 ELQELYLKGNELKTLPP---GLL----TPT-PKLEKLSLANNNLT-ELPAGLLNGLEN 173

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 14/123 (11%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P +        + L    N+I    P    +L  L ELYL  N L A  LP  +F
Sbjct: 34  VPAGIPTNA-------QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVF 84

Query: 130 NS-SNIQVIILYGNHLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
           +S + + V+ L  N L+  L S+++  L +L+ LF+  N L  + P  I   + +T L L
Sbjct: 85  DSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLAL 142

Query: 187 SKN 189
            +N
Sbjct: 143 DQN 145

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 49  TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE 108
              + L   + L  + + +      L          LR L+   + +R   P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
           L  L L  N L++  L        ++Q ++L GN L
Sbjct: 82  LSRLNLSFNALES--LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 99  IPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG-HLRSSIYLPNL 157
               +     L ELY++       L    +     ++ + +  + L      +  + P L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 158 ENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
             L L  N L  +   ++   S +  L LS N   C
Sbjct: 83  SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 64/247 (25%)

Query: 51  PNELWQLQR-LRIVDLSSGII----PGS----LPDDTSGDCIMLRRLSFS-FNKIRGWIP 100
                +L++ L  +  +  ++     GS    +  D      +  ++ F  F     W+ 
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-----WL- 187

Query: 101 QKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENL 160
             + N      +      L   + P+    S +   I L  + +   LR  +     EN 
Sbjct: 188 -NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN- 245

Query: 161 FLWQNNLCGIVPDSICNASEVTILELSKNLFSC--LIPNTS---GVFPNSIGNLST---S 212
                  C +V  ++ NA             SC  L+  T+    V  + +   +T   S
Sbjct: 246 -------CLLVLLNVQNAKAWNAFN-----LSCKILL--TTRFKQVT-DFLSAATTTHIS 290

Query: 213 LENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIP--TCLAN--LTS 268
           L++             +            ++SL    L     +  +P      N    S
Sbjct: 291 LDHH-----------SMTLT------PDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLS 331

Query: 269 LISLNLR 275
           +I+ ++R
Sbjct: 332 IIAESIR 338

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 8e-06
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
                +   +R++ L+   +   L        +++  L  S N++R  +P  +  L  L 
Sbjct: 434 SVLKMEYADVRVLHLAHKDL-TVLCH--LEQLLLVTHLDLSHNRLRA-LPPALAALRCLE 489

Query: 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLS-----GHLRSSIYLPNLENLFLWQN 165
            L    N L+   +   + N   +Q ++L  N L        L S    P L  L L  N
Sbjct: 490 VLQASDNALEN--VDG-VANLPRLQELLLCNNRLQQSAAIQPLVS---CPRLVLLNLQGN 543

Query: 166 NLC 168
           +LC
Sbjct: 544 SLC 546

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 36/211 (17%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
           +  LS     +       +  L  L+ L L  N +      + + N + I  + L GN L
Sbjct: 43  ITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITD---LAPLKNLTKITELELSGNPL 97

Query: 145 SGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN 204
             ++ +   L +++ L L    +  + P  +   S + +L L  N  + + P        
Sbjct: 98  K-NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-------- 146

Query: 205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIK--------------CNLESLFGLLL 250
            +  L T+L+     + Q+S   P    NLS +                 +L +L  + L
Sbjct: 147 -LAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202

Query: 251 GGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
             + +    P  LAN ++L  + L +  + +
Sbjct: 203 KNNQISDVSP--LANTSNLFIVTLTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 34/192 (17%), Positives = 70/192 (36%), Gaps = 30/192 (15%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
             +++   + +   + Q   +L  +  L   G  +        +   +N+  + L  N +
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQI 75

Query: 145 SGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN 204
           +  L     L  +  L L  N L  +   +I     +  L+L+    + + P        
Sbjct: 76  T-DLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP-------- 124

Query: 205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA 264
            +  L ++L+  Y    Q++        N+S +    L +L  L +G   +    P  LA
Sbjct: 125 -LAGL-SNLQVLYLDLNQIT--------NISPL--AGLTNLQYLSIGNAQVSDLTP--LA 170

Query: 265 NLTSLISLNLRS 276
           NL+ L +L    
Sbjct: 171 NLSKLTTLKADD 182

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 13/164 (7%)

Query: 52  NELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE 111
           + +  LQ ++ +DL+S  I    P         L+ L    N+I    P  +  LT L  
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPL---AGLSNLQVLYLDLNQITNISP--LAGLTNLQY 155

Query: 112 LYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIV 171
           L +    +      + + N S +  +    N +S  +     LPNL  + L  N +  + 
Sbjct: 156 LSIGNAQVSD---LTPLANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDV- 210

Query: 172 PDSICNASEVTILELSKNLFSCLIP--NTSGVFPNSIGNLSTSL 213
              + N S + I+ L+    +      N + V PN +   S + 
Sbjct: 211 -SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 36/177 (20%), Positives = 72/177 (40%), Gaps = 28/177 (15%)

Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQ 164
            L   +++    +N+          +   I  +  +G  ++  +    YL NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKD 72

Query: 165 NNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224
           N +  + P  + N +++T LELS N    +           I  L  S++    +S Q++
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLKNVSA---------IAGL-QSIKTLDLTSTQIT 120

Query: 225 GGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
                    L+ +   NL+ L+   L  + +    P  LA LT+L  L++ + +++ 
Sbjct: 121 -----DVTPLAGLS--NLQVLY---LDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 23/171 (13%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P DT        +L      +          LT+L  L LD N LQ   L + +F
Sbjct: 29  VPSGIPADT-------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVF 79

Query: 130 NS-SNIQVIILYGNHLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILEL 186
           +  + +  + L  N L+  L   ++  L  L+ L+L  N L  +        +++  L L
Sbjct: 80  DDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138

Query: 187 SKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG-FGNLSN 236
           + N    + P   G F     +  T+L+    S+ QL   +P G F  L  
Sbjct: 139 NTNQLQSI-PA--GAF-----DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGK 180

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTEL 109
                 L +L  ++L    +  +L      D   L  L  + N++   +P  +  +LT+L
Sbjct: 52  DATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQL 109

Query: 110 VELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSI------YLPNLENLFL 162
            +LYL GN L++  LPS +F+  + ++ + L  N L      SI       L NL+ L L
Sbjct: 110 DKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQ-----SIPAGAFDKLTNLQTLSL 162

Query: 163 WQNNLCGIVPDSICNASEVTILELSKNLFSC 193
             N L  +   +     ++  + L  N F C
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 34/143 (23%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNH 143
           L +L    N++ G  P      + + EL L  N ++   + + +F     ++ + LY N 
Sbjct: 56  LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--ISNKMFLGLHQLKTLNLYDNQ 113

Query: 144 LSGHLRSSI------YLPNLENLFLWQNNL---CGI------------VPDSICNAS--- 179
           +     S +      +L +L +L L  N     C +               +    +   
Sbjct: 114 I-----SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168

Query: 180 --EVTILELSKNLFSCLIPNTSG 200
             +V I +L  + F C   N+ G
Sbjct: 169 VRDVQIKDLPHSEFKCSSENSEG 191

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 14/128 (10%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLLPSVI 128
           IP  +P  T         L  + N++       + G L  LV+L L  N L    +    
Sbjct: 23  IPRDIPLHT-------TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNA 73

Query: 129 FNS-SNIQVIILYGNHLSGHLRSSIY--LPNLENLFLWQNNLCGIVPDSICNASEVTILE 185
           F   S+IQ + L  N +   + + ++  L  L+ L L+ N +  ++P S  + + +T L 
Sbjct: 74  FEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 186 LSKNLFSC 193
           L+ N F+C
Sbjct: 133 LASNPFNC 140

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 5/156 (3%)

Query: 16  SLPNLTLGGTIPPHIGNLSFLVSLTSVAKSF-YGTLPNELWQLQRLRIVDLSSGIIPGSL 74
           SL  +TL       +  + +  ++  +  +  + T  N +  L  L  + +    +    
Sbjct: 45  SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDK 104

Query: 75  PDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI 134
             + SG    L  L  S +     I  KI  L ++  + L  N     +    +     +
Sbjct: 105 IPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPEL 161

Query: 135 QVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI 170
           + + +  + +    R     P L  L+ +   + G 
Sbjct: 162 KSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 24/177 (13%)

Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQ 164
                +   L G +  A +  +     +++  I L   +++  L    Y  N+++L +  
Sbjct: 21  TFKAYLNGLL-GQSSTANITEA---QMNSLTYITLANINVT-DLTGIEYAHNIKDLTINN 75

Query: 165 NNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS 224
            +     P  I   S +  L +          + +     ++  L TSL     S     
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGK-------DVTSDKIPNLSGL-TSLTLLDISHSAHD 125

Query: 225 GGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS 281
             I      L  +   +L     +              L  L  L SLN++   ++ 
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAI---------TDIMPLKTLPELKSLNIQFDGVHD 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 35/190 (18%), Positives = 76/190 (40%), Gaps = 30/190 (15%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
             + +     +   + Q    L  + ++  + +++++      I    N+  + L GN L
Sbjct: 26  TIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKL 80

Query: 145 SGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN 204
           +  ++    L NL  LFL +N +  +    + +  ++  L L  N  S +          
Sbjct: 81  T-DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING-------- 129

Query: 205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA 264
            + +L   LE+ Y  + +++        +++ +    L  L  L L  + +   +P  LA
Sbjct: 130 -LVHL-PQLESLYLGNNKIT--------DITVL--SRLTKLDTLSLEDNQISDIVP--LA 175

Query: 265 NLTSLISLNL 274
            LT L +L L
Sbjct: 176 GLTKLQNLYL 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 81  DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILY 140
           D   L+ LS   N I       + +L +L  LYL  N +      +V+   + +  + L 
Sbjct: 110 DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLE 164

Query: 141 GNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN 189
            N +S  +     L  L+NL+L +N++  +   ++     + +LEL   
Sbjct: 165 DNQIS-DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQ 210

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P  T         L    N ++         LT L +LYL GN LQ+  LP+ +F
Sbjct: 22  VPTGIPAQT-------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVF 72

Query: 130 NS-SNIQVIILYGNHLSGHLRSSIY--LPNLENLFLWQNNL 167
           N  +++  + L  N L   L + ++  L  L+ L L  N L
Sbjct: 73  NKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 21/131 (16%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P           RL    NK++         LT+L +L L  N +Q+  LP  +F
Sbjct: 22  VPTGIPSSA-------TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVF 72

Query: 130 NS-SNIQVIILYGNHLSGHLRSSI------YLPNLENLFLWQNNLCGIVPDSICNASEVT 182
           +  + + ++ L+ N L      S+       L  L+ L L  N L  +        + + 
Sbjct: 73  DKLTKLTILYLHENKL-----QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127

Query: 183 ILELSKNLFSC 193
            + L  N + C
Sbjct: 128 KIWLHTNPWDC 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 57  LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116
              +R + L +        +  + + + L  LS     +       +  L +L +L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSE 80

Query: 117 NNLQAGLLPSVIFNSSNIQVIILYGNHLS--GHLRSSIYLPNLENLFLWQNNLC 168
           N +  G L  +     N+  + L GN L     L     L  L++L L+   + 
Sbjct: 81  NRI-FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQ 164
               + EL LD      G +  +     N++ + L    L   + +   LP L+ L L +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSE 80

Query: 165 NNLCGIVPDSICNASEVTILELSKNLFSCL 194
           N + G +         +T L LS N    +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 17/96 (17%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS-SNIQVIILYGNH 143
           L  +  S N+I     Q   N+T+L+ L L  N L+   +P   F+   +++++ L+GN 
Sbjct: 56  LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC--IPPRTFDGLKSLRLLSLHGND 113

Query: 144 LSGHLRSSI------YLPNLENLFLWQNNL---CGI 170
           +     S +       L  L +L +  N L   C +
Sbjct: 114 I-----SVVPEGAFNDLSALSHLAIGANPLYCDCNM 144

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 31/198 (15%)

Query: 85  LRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL 144
             + +     +   + QK   L+ +     D +N+Q+    + +   +N++ + L  N +
Sbjct: 21  AVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQS---LAGMQFFTNLKELHLSHNQI 75

Query: 145 SGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN 204
           S  L     L  LE L + +N L  +          ++ L L  N               
Sbjct: 76  S-DLSPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDTDS-------- 123

Query: 205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA 264
            + +L  +LE     + +L         ++  +    L  L  L L G+ +       L 
Sbjct: 124 -LIHL-KNLEILSIRNNKLK--------SIVML--GFLSKLEVLDLHGNEITNTGG--LT 169

Query: 265 NLTSLISLNLRSIRLNST 282
            L  +  ++L   +  + 
Sbjct: 170 RLKKVNWIDLTGQKCVNE 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.24
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.99
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.56
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.21

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-35  Score=245.32  Aligned_cols=257  Identities=25%  Similarity=0.391  Sum_probs=229.6

Q ss_pred             CCeeecCCC--CceEEEEcCCCcccc--CCCccccCCCCccEEEecC-CcceeeCCccccCCCCCcEEEcCCCcccccCC
Q 039577            1 VGVTCGVPH--RRVTALSLPNLTLGG--TIPPHIGNLSFLVSLTSVA-KSFYGTLPNELWQLQRLRIVDLSSGIIPGSLP   75 (282)
Q Consensus         1 ~~~~~~~~~--~~l~~l~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~   75 (282)
                      +||+|+...  +++++|+++++.+.+  .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+.+|
T Consensus        39 ~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  118 (313)
T 1ogq_A           39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP  118 (313)
T ss_dssp             TTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred             cceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC
Confidence            489998644  899999999999998  8999999999999999995 99998899999999999999999999987777


Q ss_pred             CCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCC-CCcEEEecCccccccCCCCc-C
Q 039577           76 DDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSS-NIQVIILYGNHLSGHLRSSI-Y  153 (282)
Q Consensus        76 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~-~  153 (282)
                      . .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+ .+..|..+..+. .|+.|++++|.+....+..+ .
T Consensus       119 ~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~  196 (313)
T 1ogq_A          119 D-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             G-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             H-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc-cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence            7 789999999999999999988899999999999999999998 445788888887 99999999999987777777 5


Q ss_pred             CCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccC
Q 039577          154 LPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGN  233 (282)
Q Consensus       154 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  233 (282)
                      +. |+.|++++|.+++..|..+..+++|++|++++|.+++..+        .+..++ +|++|++++|.+++.+|..+..
T Consensus       197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~  266 (313)
T 1ogq_A          197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--------KVGLSK-NLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--------GCCCCT-TCCEEECCSSCCEECCCGGGGG
T ss_pred             Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--------cccccC-CCCEEECcCCcccCcCChHHhc
Confidence            55 9999999999998888889999999999999999975433        244556 9999999999999899988876


Q ss_pred             CccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577          234 LSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       234 l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~  278 (282)
                      +        ++|+.|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus       267 l--------~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          267 L--------KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             C--------TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             C--------cCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            5        67889999999999999986 889999999999997

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-34  Score=266.25  Aligned_cols=268  Identities=30%  Similarity=0.413  Sum_probs=217.7

Q ss_pred             ceEEEEcCCCccccCCCccccC--CCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577           11 RVTALSLPNLTLGGTIPPHIGN--LSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++|++++|.+.+.+|..+..  +++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|. .+..+++|++|
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L  447 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDL  447 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-HHhcCCCCCEE
Confidence            5666666666666666655554  66788888888888777888888888888888888888766666 67788888888


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      ++.+|.+.+..|..+..+++|++|++++|.+ .+..|..+..+++|++|++++|.+....+.++ .+++|+.|++++|.+
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCCcc-cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence            8888888877788888888888999988888 55677788888899999999998887777777 788999999999999


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCC-----------------------------------------------
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSG-----------------------------------------------  200 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----------------------------------------------  200 (282)
                      ++.+|..+..+++|++|++++|.+++.+|....                                               
T Consensus       527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (768)
T 3rgz_A          527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR  606 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred             cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence            888888888899999999999988877664311                                               


Q ss_pred             ----------------CCCCcccccccccceEEeecccceecCCccccCCccCcccc----------------cccccee
Q 039577          201 ----------------VFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN----------------LESLFGL  248 (282)
Q Consensus       201 ----------------~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~----------------l~~l~~L  248 (282)
                                      ..|..+..++ .|+.|++++|++++.+|..++.++.|+.|+                +++|+.|
T Consensus       607 l~~~~~~~l~~~~~~g~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L  685 (768)
T 3rgz_A          607 LSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL  685 (768)
T ss_dssp             GGGTCCSCTTSCEEEEECCCSCSSSB-CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cccccccccccceecccCchhhhccc-cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence                            1223344455 788899999999888898888888888887                5689999


Q ss_pred             eccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      |+++|.++|.+|..+..+++|+++++++|+++|
T Consensus       686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             ECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            999999999999999999999999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-32  Score=254.32  Aligned_cols=214  Identities=29%  Similarity=0.422  Sum_probs=138.8

Q ss_pred             CceEEEEcCCCccccCCCcc-ccCCCCccEEEecCCcceeeCCccccC---------------------------CCCCc
Q 039577           10 RRVTALSLPNLTLGGTIPPH-IGNLSFLVSLTSVAKSFYGTLPNELWQ---------------------------LQRLR   61 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~---------------------------l~~L~   61 (282)
                      +++++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+.+                           +++|+
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            45556666666555555543 555555555555555555555544444                           44555


Q ss_pred             EEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecC
Q 039577           62 IVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG  141 (282)
Q Consensus        62 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  141 (282)
                      .|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+ .+..|..+..+++|++|++++
T Consensus       398 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~  475 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDF  475 (768)
T ss_dssp             EEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCS
T ss_pred             EEECCCCccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc-cCcCCHHHcCCCCceEEEecC
Confidence            555555555444444 555666666666666666655666666667777777777666 445666666677777777777


Q ss_pred             ccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeec
Q 039577          142 NHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASS  220 (282)
Q Consensus       142 ~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~  220 (282)
                      |.+....+..+ .+++|+.|++++|.+++.+|..++.+++|++|++++|.+++.+       |..+..++ +|+.|++++
T Consensus       476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-------p~~l~~l~-~L~~L~Ls~  547 (768)
T 3rgz_A          476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-------PAELGDCR-SLIWLDLNT  547 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC-------CGGGGGCT-TCCEEECCS
T ss_pred             CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC-------CHHHcCCC-CCCEEECCC
Confidence            77766666555 6777777777777777677777777777777777777776544       44667777 899999998


Q ss_pred             ccceecCCccccC
Q 039577          221 CQLSGGIPVGFGN  233 (282)
Q Consensus       221 n~~~~~~~~~~~~  233 (282)
                      |.+.+.+|..+..
T Consensus       548 N~l~g~ip~~~~~  560 (768)
T 3rgz_A          548 NLFNGTIPAAMFK  560 (768)
T ss_dssp             SEEESBCCGGGGT
T ss_pred             CccCCcCChHHhc
Confidence            8888777765543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.8e-33  Score=251.06  Aligned_cols=263  Identities=21%  Similarity=0.239  Sum_probs=201.3

Q ss_pred             CCeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEecCCc-----------------------------------
Q 039577            1 VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKS-----------------------------------   45 (282)
Q Consensus         1 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----------------------------------   45 (282)
                      +||+|+. .++|+.|+++++.+.|.+|++++++++|++|++++|.                                   
T Consensus        73 ~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~  151 (636)
T 4eco_A           73 PGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD  151 (636)
T ss_dssp             TTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTC
T ss_pred             CCeEEcC-CCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhc
Confidence            5999987 4899999999999999999999999999999999884                                   


Q ss_pred             -------------------------------------------ceeeCCccccCCCCCcEEEcCCCccccc---------
Q 039577           46 -------------------------------------------FYGTLPNELWQLQRLRIVDLSSGIIPGS---------   73 (282)
Q Consensus        46 -------------------------------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~---------   73 (282)
                                                                 +++ +|..+.++++|++|++++|.+.+.         
T Consensus       152 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             CCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             cCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence                                                       334 788899999999999999999864         


Q ss_pred             --------CCCCccC--CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCC-CCCC-CCCccccCC------CCCc
Q 039577           74 --------LPDDTSG--DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN-LQAG-LLPSVIFNS------SNIQ  135 (282)
Q Consensus        74 --------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~~~------~~L~  135 (282)
                              +|. .+.  .+++|++|++++|.+.+.+|..+..+++|++|++++|. + .+ .+|..+..+      ++|+
T Consensus       231 ~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-~~~~lp~~~~~L~~~~~l~~L~  308 (636)
T 4eco_A          231 NSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-SGEQLKDDWQALADAPVGEKIQ  308 (636)
T ss_dssp             TSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-CHHHHHHHHHHHHHSGGGGTCC
T ss_pred             ccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-ccccchHHHHhhhccccCCCCC
Confidence                    887 677  99999999999999888899999999999999999998 6 44 566666665      8899


Q ss_pred             EEEecCccccccCCC--Cc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccc
Q 039577          136 VIILYGNHLSGHLRS--SI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS  212 (282)
Q Consensus       136 ~L~l~~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~  212 (282)
                      +|++++|.++ ..+.  .+ .+++|+.|++++|.+++.+| .+..+++|++|++++|.++        .+|..+..++ +
T Consensus       309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--------~lp~~l~~l~-~  377 (636)
T 4eco_A          309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--------EIPANFCGFT-E  377 (636)
T ss_dssp             EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--------ECCTTSEEEC-T
T ss_pred             EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--------cccHhhhhhc-c
Confidence            9999999888 5555  45 78889999999988887888 7777788888888888776        3344455555 4


Q ss_pred             -cceEEeecccceecCCccccCCc--cCcccc-----------------------ccccceeeccCCeeeeecch-hhhc
Q 039577          213 -LENFYASSCQLSGGIPVGFGNLS--NMIKCN-----------------------LESLFGLLLGGDALEGQIPT-CLAN  265 (282)
Q Consensus       213 -L~~L~l~~n~~~~~~~~~~~~l~--~l~~l~-----------------------l~~l~~L~l~~n~~~~~~~~-~~~~  265 (282)
                       |++|++++|.++ .+|..+....  +|+.|+                       +++|+.|++++|.++ .+|. .+..
T Consensus       378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~  455 (636)
T 4eco_A          378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFST  455 (636)
T ss_dssp             TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHT
T ss_pred             cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHcc
Confidence             666666666665 5555444332  333332                       125666666666666 3343 3444


Q ss_pred             cCCCceeeccCccCC
Q 039577          266 LTSLISLNLRSIRLN  280 (282)
Q Consensus       266 l~~L~~l~l~~n~~~  280 (282)
                      +++|++|++++|+|+
T Consensus       456 l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          456 GSPLSSINLMGNMLT  470 (636)
T ss_dssp             TCCCSEEECCSSCCS
T ss_pred             CCCCCEEECCCCCCC
Confidence            666666666666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.98  E-value=3.8e-31  Score=230.44  Aligned_cols=139  Identities=18%  Similarity=0.132  Sum_probs=111.0

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeC-CccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTL-PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   87 (282)
                      ++++++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+..|. .+..+++|++
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~  107 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLANLEV  107 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTTCCE
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCcccCCE
Confidence            478999999999998877888999999999999999887555 55688899999999999998754455 7888999999


Q ss_pred             EEcccCeecccCCcC--CcCCCCceEEEecCCCCCCCCCCcc-ccCCCCCcEEEecCccccccCC
Q 039577           88 LSFSFNKIRGWIPQK--IGNLTELVELYLDGNNLQAGLLPSV-IFNSSNIQVIILYGNHLSGHLR  149 (282)
Q Consensus        88 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~  149 (282)
                      |++++|.+.+..+..  +..+++|++|++++|.++ ...|.. +..+++|++|++++|.+....+
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcccEEeCCCCcccccCh
Confidence            999999887544433  778889999999988883 333443 6778888888888887765444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.98  E-value=6.3e-31  Score=230.46  Aligned_cols=269  Identities=19%  Similarity=0.128  Sum_probs=199.1

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      +.++++|++++|.+++..+..|.++++|++|++++|.+....|..+.++++|+.|++++|.+. .++...+..+++|++|
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            678999999999998877888999999999999999999877888999999999999999987 6776578899999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      ++++|.+....+..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            9999998876777888999999999999987 33445567788899999999988876554444 678888888888887


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCC----------------CCCCC-CcccccccccceEEeecccceecCCcc
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNT----------------SGVFP-NSIGNLSTSLENFYASSCQLSGGIPVG  230 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----------------~~~l~-~~~~~~~~~L~~L~l~~n~~~~~~~~~  230 (282)
                      .+..+..+..+++|++|++++|.+.+.++..                ...+| ..+..++ +|++|++++|.+++..+..
T Consensus       189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTS
T ss_pred             cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhh
Confidence            7555556667777777777776655443321                11222 1344455 6777777777666555555


Q ss_pred             ccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          231 FGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       231 ~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      +..+++|+.|+                +++|+.|++++|.+++..+..|..+++|+.+++++|.++
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            66665555554                345666666666666444445566666666666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=1.2e-31  Score=247.49  Aligned_cols=263  Identities=20%  Similarity=0.203  Sum_probs=200.2

Q ss_pred             CCeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEe-cCCcceee------------------------------
Q 039577            1 VGVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTS-VAKSFYGT------------------------------   49 (282)
Q Consensus         1 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~------------------------------   49 (282)
                      +||+|+. .++|++|+|+++.+.|.+|++++++++|++|+| ++|.+.+.                              
T Consensus       315 ~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~  393 (876)
T 4ecn_A          315 PGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD  393 (876)
T ss_dssp             TTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred             CceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence            4899998 689999999999999999999999999999999 66643222                              


Q ss_pred             ----------------------------------------------CCccccCCCCCcEEEcCCCcccc-----------
Q 039577           50 ----------------------------------------------LPNELWQLQRLRIVDLSSGIIPG-----------   72 (282)
Q Consensus        50 ----------------------------------------------~~~~l~~l~~L~~L~l~~~~~~~-----------   72 (282)
                                                                    +|..+.++++|+.|++++|.+.+           
T Consensus       394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s  473 (876)
T 4ecn_A          394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN  473 (876)
T ss_dssp             CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred             cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccc
Confidence                                                          78888999999999999999986           


Q ss_pred             ------cCCCCccC--CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCC-CCCC-CCCccccCC-------CCCc
Q 039577           73 ------SLPDDTSG--DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN-LQAG-LLPSVIFNS-------SNIQ  135 (282)
Q Consensus        73 ------~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~~~-------~~L~  135 (282)
                            .+|. .++  .+++|++|++++|.+.+.+|..+..+++|++|++++|. + .+ .+|..+..+       ++|+
T Consensus       474 ~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-sg~~iP~~i~~L~~~~~~l~~L~  551 (876)
T 4ecn_A          474 SDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-SAAQLKADWTRLADDEDTGPKIQ  551 (876)
T ss_dssp             SHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-CHHHHHHHHHHHHHCTTTTTTCC
T ss_pred             cccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-ccccchHHHHhhhhcccccCCcc
Confidence                  2787 555  99999999999999888889889999999999999997 6 33 455545444       4888


Q ss_pred             EEEecCccccccCCC--Cc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccc
Q 039577          136 VIILYGNHLSGHLRS--SI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS  212 (282)
Q Consensus       136 ~L~l~~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~  212 (282)
                      .|++++|.+. ..+.  .+ .+++|+.|++++|.++ .+| .+..+++|++|++++|.++        .+|..+..++ +
T Consensus       552 ~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~--------~lp~~l~~l~-~  619 (876)
T 4ecn_A          552 IFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE--------EIPEDFCAFT-D  619 (876)
T ss_dssp             EEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS--------CCCTTSCEEC-T
T ss_pred             EEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc--------cchHHHhhcc-c
Confidence            8888888888 5555  45 7888888888888887 777 6777888888888888776        3444556665 5


Q ss_pred             -cceEEeecccceecCCccccCCcc--Ccccc---------------------ccccceeeccCCeeeeecchhh-hccC
Q 039577          213 -LENFYASSCQLSGGIPVGFGNLSN--MIKCN---------------------LESLFGLLLGGDALEGQIPTCL-ANLT  267 (282)
Q Consensus       213 -L~~L~l~~n~~~~~~~~~~~~l~~--l~~l~---------------------l~~l~~L~l~~n~~~~~~~~~~-~~l~  267 (282)
                       |++|++++|.++ .+|..+..+..  |+.|+                     .++|+.|++++|.++ .+|..+ ..++
T Consensus       620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~  697 (876)
T 4ecn_A          620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGS  697 (876)
T ss_dssp             TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTC
T ss_pred             cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCC
Confidence             777777777776 56655544332  33333                     125667777777776 455443 3667


Q ss_pred             CCceeeccCccCC
Q 039577          268 SLISLNLRSIRLN  280 (282)
Q Consensus       268 ~L~~l~l~~n~~~  280 (282)
                      +|+.|++++|+|+
T Consensus       698 ~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          698 PISTIILSNNLMT  710 (876)
T ss_dssp             CCSEEECCSCCCS
T ss_pred             CCCEEECCCCcCC
Confidence            7777777777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=9.8e-30  Score=222.86  Aligned_cols=239  Identities=21%  Similarity=0.165  Sum_probs=182.8

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|++++|.+.+..|.+|.++++|++|++++|.+....+..+.++++|+.|++++|.+.+..+. .+..+++|++|
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L  133 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEE
Confidence            46899999999999887788899999999999999988754444577899999999999998744444 78889999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCC-----------
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPN-----------  156 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~-----------  156 (282)
                      ++.+|.+....+..+..+++|++|++++|.++. ..+..+..+++|+.|++.+|.+....+..+ .+++           
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence            999998886667778888999999999988733 233346677777888777777665444333 4444           


Q ss_pred             -------------ccEEEeecCcceeecc-chhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccc
Q 039577          157 -------------LENLFLWQNNLCGIVP-DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQ  222 (282)
Q Consensus       157 -------------L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~  222 (282)
                                   |+.|++++|.++ .+| ..+..+++|++|++++|.+++..+.       .+..++ +|++|++++|.
T Consensus       213 ~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~-~L~~L~L~~n~  283 (477)
T 2id5_A          213 LDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGS-------MLHELL-RLQEIQLVGGQ  283 (477)
T ss_dssp             CCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTT-------SCTTCT-TCCEEECCSSC
T ss_pred             ccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChh-------hccccc-cCCEEECCCCc
Confidence                         455555555554 333 3566778888888888887754332       455666 89999999999


Q ss_pred             ceecCCccccCCccCcccc----------------ccccceeeccCCeeeee
Q 039577          223 LSGGIPVGFGNLSNMIKCN----------------LESLFGLLLGGDALEGQ  258 (282)
Q Consensus       223 ~~~~~~~~~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~  258 (282)
                      +.+..|..+..+++|+.|+                +++|+.|++++|.+...
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            9888788888888888887                46799999999998854

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=5.9e-30  Score=212.29  Aligned_cols=228  Identities=23%  Similarity=0.320  Sum_probs=202.0

Q ss_pred             CCccEEEecCCccee--eCCccccCCCCCcEEEcCC-CcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCce
Q 039577           34 SFLVSLTSVAKSFYG--TLPNELWQLQRLRIVDLSS-GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV  110 (282)
Q Consensus        34 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  110 (282)
                      .+++.|+++++.+.+  .+|..+.++++|++|++++ |.+.+.+|. .+..+++|++|++++|.+.+..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            589999999999998  8999999999999999995 888877887 789999999999999999888899999999999


Q ss_pred             EEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCC-CccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577          111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLP-NLENLFLWQNNLCGIVPDSICNASEVTILELSK  188 (282)
Q Consensus       111 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  188 (282)
                      +|++++|.+ .+..|..+..+++|++|++++|.+....+..+ .++ +|+.|++++|.+++..|..+..+. |++|++++
T Consensus       129 ~L~Ls~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEE-ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EEeCCCCcc-CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            999999998 45678889999999999999999987777666 666 999999999999988998888886 99999999


Q ss_pred             cccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCC
Q 039577          189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTS  268 (282)
Q Consensus       189 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~  268 (282)
                      |.+++..       |..+..++ +|++|++++|.+++..|. +..        +++|++|++++|.+++.+|..+..+++
T Consensus       207 N~l~~~~-------~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~--------l~~L~~L~Ls~N~l~~~~p~~l~~l~~  269 (313)
T 1ogq_A          207 NMLEGDA-------SVLFGSDK-NTQKIHLAKNSLAFDLGK-VGL--------SKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             SEEEECC-------GGGCCTTS-CCSEEECCSSEECCBGGG-CCC--------CTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             CcccCcC-------CHHHhcCC-CCCEEECCCCceeeecCc-ccc--------cCCCCEEECcCCcccCcCChHHhcCcC
Confidence            9998543       34566677 999999999999865554 443        378999999999999999999999999


Q ss_pred             CceeeccCccCCC
Q 039577          269 LISLNLRSIRLNS  281 (282)
Q Consensus       269 L~~l~l~~n~~~~  281 (282)
                      |+++++++|+++|
T Consensus       270 L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          270 LHSLNVSFNNLCG  282 (313)
T ss_dssp             CCEEECCSSEEEE
T ss_pred             CCEEECcCCcccc
Confidence            9999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=3e-29  Score=225.96  Aligned_cols=137  Identities=18%  Similarity=0.121  Sum_probs=108.6

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+++..|.+|.++++|++|++++|.+....|..+.++++|++|++++|.+.+..|. .+..+++|++|
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L  110 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHL  110 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEe
Confidence            67899999999999877788899999999999999999887788899999999999999998754455 78889999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH  147 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  147 (282)
                      ++++|.+....+..+..+++|++|++++|.++....+.. ..+++|+.|++++|.+...
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT-CCCTTCCEEECCSSCCCEE
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCcccc-cCCcccCEEEcccCccccc
Confidence            999988885445667888888888888888743223433 3366677777766665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.8e-29  Score=227.40  Aligned_cols=262  Identities=23%  Similarity=0.172  Sum_probs=133.6

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCccc-------------------
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP-------------------   71 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-------------------   71 (282)
                      ++++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.                   
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            4555666555555444444555555555555555554 44545555555555555555544                   


Q ss_pred             -----ccCCCCccCCCCCccEEEcccCeecccC--CcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccc
Q 039577           72 -----GSLPDDTSGDCIMLRRLSFSFNKIRGWI--PQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL  144 (282)
Q Consensus        72 -----~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  144 (282)
                           +.++...+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC-EEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC-CcCCHHHhcCCccCCeEECCCCcC
Confidence                 3333333444455555555554444322  33444455555555555544 222333444455555555555555


Q ss_pred             cccCCCC-c-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccc
Q 039577          145 SGHLRSS-I-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQ  222 (282)
Q Consensus       145 ~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~  222 (282)
                      ....+.. + .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+...    ..+..+..++ +|++|++++|.
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~l~-~L~~L~Ls~n~  487 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI----QKTNSLQTLG-RLEILVLSFCD  487 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE----CSSCGGGGCT-TCCEEECTTSC
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc----ccchhhccCC-CccEEECCCCc
Confidence            4333222 2 45555555555555554444445555556666666555543110    0112344555 66677777666


Q ss_pred             ceecCCccccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          223 LSGGIPVGFGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       223 ~~~~~~~~~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      +++..|..+..+++|+.|+                +++| .|++++|.+++..|..+..+++|+.+++++|.++
T Consensus       488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence            6655566666655555444                2334 5555555555555555555556666666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=2.8e-28  Score=219.67  Aligned_cols=136  Identities=19%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|. .+..+++|++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L  109 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENL  109 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEE
Confidence            57889999999988877777888899999999999888876777788889999999998888743344 77888888888


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLS  145 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  145 (282)
                      ++++|.+....+..++.+++|++|++++|.++...+|..+.++++|++|++++|.+.
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            888888775444667778888888888887743345667777777777777766544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=7.2e-29  Score=231.09  Aligned_cols=271  Identities=20%  Similarity=0.138  Sum_probs=191.3

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeC-CccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTL-PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   87 (282)
                      ++++++|++++|.+++..+.+|.++++|++|++++|.....+ |..+.++++|++|++++|.+.+..|. .+..+++|++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCE
Confidence            689999999999998888889999999999999999766666 67889999999999999999755555 8899999999


Q ss_pred             EEcccCeecccCCcC--CcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CC--CCccEEEe
Q 039577           88 LSFSFNKIRGWIPQK--IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YL--PNLENLFL  162 (282)
Q Consensus        88 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~--~~L~~L~l  162 (282)
                      |++++|.+.+..+..  +..+++|++|++++|.++....+..+.++++|++|++++|.+....+..+ .+  ++|+.|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            999999988655554  88999999999999998543344578899999999999998876555444 23  55666666


Q ss_pred             ecCcceeeccchhhCCCC------CcEEeccCcccceecCCCC-------------------------------------
Q 039577          163 WQNNLCGIVPDSICNASE------VTILELSKNLFSCLIPNTS-------------------------------------  199 (282)
Q Consensus       163 ~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~~-------------------------------------  199 (282)
                      ++|.+.+..|..+..+.+      |++|++++|.+++..+...                                     
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~  261 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA  261 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence            666555444433333222      5555555553332211100                                     


Q ss_pred             ------------------CCCCCcccccccccceEEeecccceecCCccccCCccCcccc----------------cccc
Q 039577          200 ------------------GVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN----------------LESL  245 (282)
Q Consensus       200 ------------------~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~----------------l~~l  245 (282)
                                        ...+..+..++ +|++|++++|.+.+..|..+..+++|+.|+                +++|
T Consensus       262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (844)
T 3j0a_A          262 GLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV  340 (844)
T ss_dssp             TTTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred             ccccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence                              01122344455 677777777777666566666666666664                4567


Q ss_pred             ceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          246 FGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       246 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      +.|++++|.+.+..+..|..+++|+.|++++|.+++
T Consensus       341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            777777777765555566777777777777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=4.1e-30  Score=232.46  Aligned_cols=264  Identities=17%  Similarity=0.198  Sum_probs=184.4

Q ss_pred             CCceEEEEcCCCccccC-----------------CCcccc--CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc
Q 039577            9 HRRVTALSLPNLTLGGT-----------------IPPHIG--NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI   69 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~   69 (282)
                      .+++++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..+.++++|+.|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            46899999999999886                 898888  99999999999999998899999999999999999998


Q ss_pred             -ccc-cCCCCccCCC------CCccEEEcccCeecccCCc--CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEe
Q 039577           70 -IPG-SLPDDTSGDC------IMLRRLSFSFNKIRGWIPQ--KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIIL  139 (282)
Q Consensus        70 -~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  139 (282)
                       +.+ .+|. .+..+      ++|++|++++|.+. .+|.  .+..+++|++|++++|.+ .+.+| .+..+++|+.|++
T Consensus       285 ~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l-~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          285 GISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL-EGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             TSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC-EEECC-CCEEEEEESEEEC
T ss_pred             CCccccchH-HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC-ccchh-hhCCCCCCCEEEC
Confidence             876 5665 44444      88999999998888 6787  788888999999998887 33466 6777788888888


Q ss_pred             cCccccccCCCCc-CCCC-ccEEEeecCcceeeccchhhCCC--CCcEEeccCcccceecCCCCCCCCCcccccccccce
Q 039577          140 YGNHLSGHLRSSI-YLPN-LENLFLWQNNLCGIVPDSICNAS--EVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLEN  215 (282)
Q Consensus       140 ~~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~  215 (282)
                      ++|.+. ..+..+ .+++ |+.|++++|.++ .+|..+....  +|++|++++|.+.+..|............++ +|++
T Consensus       361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~-~L~~  437 (636)
T 4eco_A          361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSS  437 (636)
T ss_dssp             CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC-CEEE
T ss_pred             CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC-CCCE
Confidence            888887 444445 6777 888888888887 7776665543  7888888888877655442210000111233 4555


Q ss_pred             EEeecccceecCCccc-cCCccCccccc-----------------------cccceeeccCCeeeeecchhhh--ccCCC
Q 039577          216 FYASSCQLSGGIPVGF-GNLSNMIKCNL-----------------------ESLFGLLLGGDALEGQIPTCLA--NLTSL  269 (282)
Q Consensus       216 L~l~~n~~~~~~~~~~-~~l~~l~~l~l-----------------------~~l~~L~l~~n~~~~~~~~~~~--~l~~L  269 (282)
                      |++++|.++ .+|..+ ..+++|+.|++                       ++|++|++++|.++ .+|..+.  .+++|
T Consensus       438 L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L  515 (636)
T 4eco_A          438 INLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL  515 (636)
T ss_dssp             EECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred             EECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence            555555554 333322 23444444430                       15666666666666 4555554  56666


Q ss_pred             ceeeccCccCCC
Q 039577          270 ISLNLRSIRLNS  281 (282)
Q Consensus       270 ~~l~l~~n~~~~  281 (282)
                      ++|++++|+|++
T Consensus       516 ~~L~Ls~N~l~~  527 (636)
T 4eco_A          516 VGIDLSYNSFSK  527 (636)
T ss_dssp             CEEECCSSCCSS
T ss_pred             CEEECCCCCCCC
Confidence            666666666543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=2.4e-28  Score=212.74  Aligned_cols=263  Identities=19%  Similarity=0.191  Sum_probs=192.1

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF   92 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   92 (282)
                      +.++..+++++ .+|. +.  ++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            35677777664 4565 32  79999999999999877889999999999999999987677666889999999999999


Q ss_pred             CeecccCCcCCcCCCCceEEEecCCCCCCCCCCc--cccCCCCCcEEEecCccccccCCCC-c-CCCCccEEEeecCcce
Q 039577           93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS--VIFNSSNIQVIILYGNHLSGHLRSS-I-YLPNLENLFLWQNNLC  168 (282)
Q Consensus        93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~  168 (282)
                      |.+....|..+..+++|++|++++|.+ .+..+.  .+..+++|++|++++|.+....+.. + .+++|+.|++++|.++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCC-BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhccCcccCCEEeCCCCCC-CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            999876788899999999999999988 332232  3778899999999999998776665 4 7899999999999887


Q ss_pred             eeccchhhC----------------------------------CCCCcEEeccCcccceecCCC----------------
Q 039577          169 GIVPDSICN----------------------------------ASEVTILELSKNLFSCLIPNT----------------  198 (282)
Q Consensus       169 ~~~~~~l~~----------------------------------~~~L~~L~l~~~~~~~~~~~~----------------  198 (282)
                      +..+..+..                                  +++|++|++++|.+.+..+..                
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            544433322                                  245667777766554311100                


Q ss_pred             ----------------------------------------CCCCCCcccccccccceEEeecccceecCCccccCCccCc
Q 039577          199 ----------------------------------------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMI  238 (282)
Q Consensus       199 ----------------------------------------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  238 (282)
                                                              .+..|..+..++ +|++|++++|.+.+..|..+..+++|+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~  326 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLL  326 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCC
Confidence                                                    011233455555 677777777777666566666666666


Q ss_pred             ccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          239 KCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       239 ~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      .|+                +++|++|++++|.+++..|..|..+++|++|++++|+|++
T Consensus       327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence            665                4566677777777766666666666777777777666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1.7e-28  Score=223.79  Aligned_cols=262  Identities=21%  Similarity=0.223  Sum_probs=195.2

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence            578999999999998766667889999999999999988777777888999999999999886 6776568889999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc---CCCCccEEEeecC
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI---YLPNLENLFLWQN  165 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~  165 (282)
                      ++++|.+....+..+..+++|++|++++|.+ ....+..+..+++|++|++++|.+....+..+   .+++|+.|++++|
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            9999888754456788889999999998887 44445566778888888888877665443322   3456666666666


Q ss_pred             cceeecc---------------------------------------------------chhhCCC--CCcEEeccCcccc
Q 039577          166 NLCGIVP---------------------------------------------------DSICNAS--EVTILELSKNLFS  192 (282)
Q Consensus       166 ~~~~~~~---------------------------------------------------~~l~~~~--~L~~L~l~~~~~~  192 (282)
                      .+++..|                                                   ..+..++  +|++|++++|.++
T Consensus       182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence            5543322                                                   2222222  2555555555554


Q ss_pred             eecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccc-------------------------cccce
Q 039577          193 CLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL-------------------------ESLFG  247 (282)
Q Consensus       193 ~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l-------------------------~~l~~  247 (282)
                      +..       |.++..++ +|++|++++|.+.+..|..+..+++|+.+++                         ++|++
T Consensus       262 ~~~-------~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          262 VVG-------NDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             EEC-------TTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             ccC-------cccccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            332       23455666 8899999988888777777877777776643                         57889


Q ss_pred             eeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       248 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      |++++|.+++..+..|..+++|+++++++|.++
T Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  366 (680)
T 1ziw_A          334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS  366 (680)
T ss_dssp             EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred             EECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence            999999999877788889999999998888654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=6.2e-28  Score=206.16  Aligned_cols=253  Identities=18%  Similarity=0.159  Sum_probs=141.4

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      .+++.++++++.+...-+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEE
Confidence            45666666666554322223455666666666666665544455666666666666666665 33333556666666666


Q ss_pred             cccCeecccCCcC-CcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCc-----------
Q 039577           90 FSFNKIRGWIPQK-IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNL-----------  157 (282)
Q Consensus        90 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L-----------  157 (282)
                      +++|.+. .+|.. +..+++|++|++++|.+ ....+..+..+++|++|++++|.+......  .+++|           
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBCCGG--GCTTCSEEECCSSCCS
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCccccc--cccccceeeccccccc
Confidence            6666666 33433 45666666666666665 222333455566666666666655432111  23333           


Q ss_pred             --------cEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCc
Q 039577          158 --------ENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV  229 (282)
Q Consensus       158 --------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~  229 (282)
                              ++|++++|.+. .+|..  ..++|++|++++|.+++.         .++..++ +|++|++++|.+++..|.
T Consensus       200 ~~~~~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l~~n~l~~~---------~~l~~l~-~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSIN-VVRGP--VNVELTILKLQHNNLTDT---------AWLLNYP-GLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             EEECCSSCSEEECCSSCCC-EEECC--CCSSCCEEECCSSCCCCC---------GGGGGCT-TCSEEECCSSCCCEEESG
T ss_pred             ccCCCCcceEEECCCCeee-ecccc--ccccccEEECCCCCCccc---------HHHcCCC-CccEEECCCCcCCCcChh
Confidence                    33333333332 11211  123455555555544421         1344444 666666666666555555


Q ss_pred             cccCCccCcccc---------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          230 GFGNLSNMIKCN---------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       230 ~~~~l~~l~~l~---------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      .+..+++|+.|+               +++|++|++++|.++ .+|..+..+++|+++++++|.|++
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence            555555555554               457777888888777 566667777777777777777764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=6.7e-29  Score=207.17  Aligned_cols=233  Identities=21%  Similarity=0.213  Sum_probs=133.8

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      +++++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|. .+..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGCTTCCEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcCcCCCEEE
Confidence            45555666555554 45555555555666666555555 45555555555555555555554 4444 455555555555


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  168 (282)
                      +++|...+.+|..+..      .          ..+..+..+++|++|++++|.+. ..+..+ .+++|+.|++++|.++
T Consensus       157 L~~n~~~~~~p~~~~~------~----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          157 IRACPELTELPEPLAS------T----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEETTCCCCCSCSEE------E----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCCccccChhHhh------c----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            5554444344443322      0          00011223556666666666655 333334 5666666666666665


Q ss_pred             eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577          169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL  248 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L  248 (282)
                       .+|..+..+++|++|++++|.+.+.+       |..+..++ +|++|++++|.+.+.+|..+..+        ++|++|
T Consensus       220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~-------p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l--------~~L~~L  282 (328)
T 4fcg_A          220 -ALGPAIHHLPKLEELDLRGCTALRNY-------PPIFGGRA-PLKRLILKDCSNLLTLPLDIHRL--------TQLEKL  282 (328)
T ss_dssp             -CCCGGGGGCTTCCEEECTTCTTCCBC-------CCCTTCCC-CCCEEECTTCTTCCBCCTTGGGC--------TTCCEE
T ss_pred             -cCchhhccCCCCCEEECcCCcchhhh-------HHHhcCCC-CCCEEECCCCCchhhcchhhhcC--------CCCCEE
Confidence             45555666677777777776665433       33445555 67777777776666666665553        456667


Q ss_pred             eccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          249 LLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      ++++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus       283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             eCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            77777777677777777777777777665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.6e-27  Score=199.10  Aligned_cols=213  Identities=19%  Similarity=0.229  Sum_probs=157.0

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++.++.|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|...   .++|++|
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L  126 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL  126 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEE
Confidence            568899999999988766667889999999999999998767888889999999999999886 677622   2688888


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCC-CCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA-GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  167 (282)
                      ++++|.+....+..+..+++|++|++++|.++. +..+..+..+++|+.|++++|.+...+. .+ .++|++|++++|.+
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~-~~~L~~L~l~~n~l  204 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GL-PPSLTELHLDGNKI  204 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SC-CTTCSEEECTTSCC
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-cc-cccCCEEECCCCcC
Confidence            888888775444457778888888888887732 1345567777888888888887764332 22 36788888888877


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCcc
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSN  236 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  236 (282)
                      ++..+..+..+++|++|++++|.+++..+.       .+..++ +|++|++++|.++ .+|.++..+++
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~  264 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNG-------SLANTP-HLRELHLNNNKLV-KVPGGLADHKY  264 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTT-------TGGGST-TCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChh-------hccCCC-CCCEEECCCCcCc-cCChhhccCCC
Confidence            755566777777888888888877654332       344555 7777777777776 66666655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=5.4e-28  Score=201.70  Aligned_cols=211  Identities=24%  Similarity=0.272  Sum_probs=161.4

Q ss_pred             CCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEE
Q 039577           33 LSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL  112 (282)
Q Consensus        33 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  112 (282)
                      .++++.|++++|.+. .+|..+.++++|++|++++|.+. .+|. .+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCS-CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhH-HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            356777777777766 56666667777777777777775 6665 5666777777777777766 566666677777777


Q ss_pred             EecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccc
Q 039577          113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF  191 (282)
Q Consensus       113 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  191 (282)
                      ++++|.. .+.+|..+..      ..         ....+ .+++|+.|++++|.++ .+|..+..+++|++|++++|.+
T Consensus       156 ~L~~n~~-~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          156 SIRACPE-LTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EEEEETT-CCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred             ECCCCCC-ccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence            7776554 3334433221      00         01112 4899999999999998 8899999999999999999998


Q ss_pred             ceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCce
Q 039577          192 SCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLIS  271 (282)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~  271 (282)
                      +        .+|..+..++ +|++|++++|.+.+.+|..+..+        ++|++|++++|.+.+.+|..+..+++|++
T Consensus       219 ~--------~l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~~~~l--------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  281 (328)
T 4fcg_A          219 S--------ALGPAIHHLP-KLEELDLRGCTALRNYPPIFGGR--------APLKRLILKDCSNLLTLPLDIHRLTQLEK  281 (328)
T ss_dssp             C--------CCCGGGGGCT-TCCEEECTTCTTCCBCCCCTTCC--------CCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred             C--------cCchhhccCC-CCCEEECcCCcchhhhHHHhcCC--------CCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence            7        4555777888 99999999999998999888775        67889999999999999999999999999


Q ss_pred             eeccCccCCC
Q 039577          272 LNLRSIRLNS  281 (282)
Q Consensus       272 l~l~~n~~~~  281 (282)
                      |++++|.+.+
T Consensus       282 L~L~~n~~~~  291 (328)
T 4fcg_A          282 LDLRGCVNLS  291 (328)
T ss_dssp             EECTTCTTCC
T ss_pred             EeCCCCCchh
Confidence            9999998876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1e-28  Score=228.03  Aligned_cols=159  Identities=16%  Similarity=0.216  Sum_probs=99.3

Q ss_pred             CCceEEEEcCCCcccc-----------------CCCcccc--CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc
Q 039577            9 HRRVTALSLPNLTLGG-----------------TIPPHIG--NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI   69 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~   69 (282)
                      -+++++|++++|.+++                 .+|..++  ++++|++|++++|.+.+.+|..+.++++|+.|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            3577888888888877                 3777766  78888888888888777778777788888888888876


Q ss_pred             -ccc-cCCCC------ccCCCCCccEEEcccCeecccCCc--CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEe
Q 039577           70 -IPG-SLPDD------TSGDCIMLRRLSFSFNKIRGWIPQ--KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIIL  139 (282)
Q Consensus        70 -~~~-~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  139 (282)
                       +.+ .+|..      .+..+++|++|++++|.+. .+|.  .+..+++|++|++++|.++  .+| .+..+++|+.|++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEEC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEEC
Confidence             654 44430      1223346666666666666 4555  5666666666666666653  344 4555555555555


Q ss_pred             cCccccccCCCCc-CCCC-ccEEEeecCcceeeccc
Q 039577          140 YGNHLSGHLRSSI-YLPN-LENLFLWQNNLCGIVPD  173 (282)
Q Consensus       140 ~~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~~~~~  173 (282)
                      ++|.+. ..+..+ .+++ |+.|++++|.++ .+|.
T Consensus       603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             cCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence            555555 333333 4444 555555555544 4443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=1.1e-27  Score=215.69  Aligned_cols=110  Identities=22%  Similarity=0.222  Sum_probs=75.2

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      -+++++|++++|.+++..|.+|.++++|++|++++|.+.+..|..+.++++|++|++++|.+. .++...++.+++|++|
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKL  133 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEE
T ss_pred             CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEE
Confidence            357777777777777666667777777777777777777655667777777777777777775 3443356667777777


Q ss_pred             EcccCeecc-cCCcCCcCCCCceEEEecCCCC
Q 039577           89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~  119 (282)
                      ++++|.+.. .+|..+..+++|++|++++|.+
T Consensus       134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             eCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            777776653 3466666666666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.6e-27  Score=214.22  Aligned_cols=254  Identities=17%  Similarity=0.148  Sum_probs=146.1

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      .+++.++++++.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEE
Confidence            44566666666554333334455666666666666666555556666666666666666665 33333556666666666


Q ss_pred             cccCeecccCCcC-CcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577           90 FSFNKIRGWIPQK-IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC  168 (282)
Q Consensus        90 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (282)
                      +++|.+.. +|.. +..+++|++|++++|.+ ....+..+..+++|++|++++|.+......  .+++|+.+++++|.+.
T Consensus       130 L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          130 LERNDLSS-LPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCS
T ss_pred             eeCCCCCC-CCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCccc
Confidence            66666663 3333 45666666666666665 333344455666666666666665533211  2333444433333332


Q ss_pred             e------------------eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcc
Q 039577          169 G------------------IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG  230 (282)
Q Consensus       169 ~------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~  230 (282)
                      +                  .++..  ..++|+.|++++|.+++         +.++..++ +|+.|++++|.+.+..|..
T Consensus       206 ~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~---------~~~l~~l~-~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          206 TLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD---------TAWLLNYP-GLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             EEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC---------CGGGGGCT-TCSEEECCSSCCCEEESGG
T ss_pred             cccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC---------ChhhccCC-CCCEEECCCCccCCCCHHH
Confidence            1                  11111  12345555555554442         12344555 6666666666666555666


Q ss_pred             ccCCccCcccc---------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          231 FGNLSNMIKCN---------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       231 ~~~l~~l~~l~---------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      +..+++|+.|+               +++|+.|++++|.++ .+|..+..+++|+.|++++|.|++
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence            66666666554               467888888888887 677777888888888888887765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1.6e-27  Score=217.39  Aligned_cols=269  Identities=22%  Similarity=0.170  Sum_probs=189.4

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      +++++|++++|.+.+..|.++.++++|++|++++|.+....+..+.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEE
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEE
Confidence            57888888888887777777778888888888888777433335777888888888888876 45544677788888888


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCcccc--CCCCCcEEEecCcc------------------------
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF--NSSNIQVIILYGNH------------------------  143 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~------------------------  143 (282)
                      +++|.+.+..+..+..+++|++|++++|.++. ..+..+.  ..++|+.|++++|.                        
T Consensus       128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~  206 (680)
T 1ziw_A          128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ  206 (680)
T ss_dssp             CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred             CCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence            88887776556667777777777777776522 2222111  22444444444443                        


Q ss_pred             ---------------------------ccccCCCCc-CC--CCccEEEeecCcceeeccchhhCCCCCcEEeccCcccce
Q 039577          144 ---------------------------LSGHLRSSI-YL--PNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC  193 (282)
Q Consensus       144 ---------------------------~~~~~~~~~-~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  193 (282)
                                                 +....+..+ .+  ++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus       207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred             cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence                                       333333333 22  348888888888876666777888889999998888877


Q ss_pred             ecCCCCC----------------------CCCC----cccccccccceEEeecccceecCCccccCCccCccccc-----
Q 039577          194 LIPNTSG----------------------VFPN----SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL-----  242 (282)
Q Consensus       194 ~~~~~~~----------------------~l~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l-----  242 (282)
                      ..+....                      .+|.    .+..++ +|++|++++|.+.+..+..+..+++|+.+++     
T Consensus       287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~  365 (680)
T 1ziw_A          287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT  365 (680)
T ss_dssp             ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT-TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred             cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC-CCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence            6554321                      1221    455566 8999999999998777778888888888764     


Q ss_pred             ---------------cccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          243 ---------------ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       243 ---------------~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                                     ++|+.|++++|.+++..|..|..+++|+.+++++|.+++
T Consensus       366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  419 (680)
T 1ziw_A          366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ  419 (680)
T ss_dssp             CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred             hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence                           367888888888887777888888888888888887753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.2e-27  Score=198.54  Aligned_cols=254  Identities=18%  Similarity=0.236  Sum_probs=155.5

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      +++++.|++++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|...+   ++|++|
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L  128 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVEL  128 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEE
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEE
Confidence            467899999999887666778889999999999999988777888888999999999999886 6776222   788888


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCC-CCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA-GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  167 (282)
                      ++++|.+....+..+..+++|++|++++|.++. +..+..+..+ +|+.|++++|.+...+. .+ .++|++|++++|.+
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~-~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL-PETLNELHLDHNKI  205 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS-CSSCSCCBCCSSCC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cc-cCCCCEEECCCCcC
Confidence            888888875334457788888888888887632 1233344444 55555555555543221 11 24455555555555


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc------
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN------  241 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~------  241 (282)
                      ++..+..+..+++|++|++++|.+++..+       ..+..++ +|++|++++|.++ .+|.++..+++|+.++      
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIEN-------GSLSFLP-TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCT-------TGGGGCT-TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCCh-------hHhhCCC-CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            43333344445555555555554442211       1233333 4445555544444 3444444433322222      


Q ss_pred             ----------------ccccceeeccCCeee--eecchhhhccCCCceeeccCcc
Q 039577          242 ----------------LESLFGLLLGGDALE--GQIPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       242 ----------------l~~l~~L~l~~n~~~--~~~~~~~~~l~~L~~l~l~~n~  278 (282)
                                      ...++.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                            244667777777665  3455667777777777777764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.3e-27  Score=213.41  Aligned_cols=108  Identities=26%  Similarity=0.228  Sum_probs=92.1

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+.+..+.++..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|..   .+++|++|
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L  126 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL  126 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence            578999999999998766778999999999999999998777888889999999999999987 77763   78899999


Q ss_pred             EcccCeecc-cCCcCCcCCCCceEEEecCCCCC
Q 039577           89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNLQ  120 (282)
Q Consensus        89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~  120 (282)
                      ++++|.+.. ..|..+..+++|++|++++|.++
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            999998884 23467888899999999988873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=7.1e-28  Score=213.23  Aligned_cols=128  Identities=20%  Similarity=0.198  Sum_probs=102.2

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+.+..|.++..+++|++|++++|.+.+..|..+.++++|++|++++|.+. .+|..   .+++|++|
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L   95 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL   95 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred             cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence            478999999999998766678899999999999999998777888999999999999999987 67762   78999999


Q ss_pred             EcccCeecc-cCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCC--cEEEecCccc
Q 039577           89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI--QVIILYGNHL  144 (282)
Q Consensus        89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~  144 (282)
                      ++++|.+.+ ..|..++.+++|++|++++|.++.    ..+..+++|  +.|++++|.+
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence            999999885 356788889999999998887732    223344444  5555555444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=9e-28  Score=198.60  Aligned_cols=229  Identities=19%  Similarity=0.162  Sum_probs=103.3

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceee--CCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGT--LPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   87 (282)
                      +++++|++++|.++...+..+..+++|++|++++|.+...  .+..+..+++|++|++++|.+. .++. .+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~-~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEE-EEETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChh-hcCCCCCCCE
Confidence            3455555555554422222344555555555555544321  1333344555555555555543 3333 3444555555


Q ss_pred             EEcccCeecccCC-cCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccc-cCCCCc-CCCCccEEEeec
Q 039577           88 LSFSFNKIRGWIP-QKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG-HLRSSI-YLPNLENLFLWQ  164 (282)
Q Consensus        88 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~-~~~~L~~L~l~~  164 (282)
                      |++++|.+....+ ..+..+++|++|++++|.+ ....+..+..+++|++|++++|.+.. ..+..+ .+++|+.|++++
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            5555555442211 2344455555555555544 22233334444555555555554443 223333 445555555555


Q ss_pred             CcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccc
Q 039577          165 NNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLES  244 (282)
Q Consensus       165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~  244 (282)
                      |.+++..|..+..+++|++|++++|.+++..+       ..+..++ +|+.|++++|.+++..|..+..++       ++
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~-------~~  249 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-------FPYKCLN-SLQVLDYSLNHIMTSKKQELQHFP-------SS  249 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-------GGGTTCT-TCCEEECTTSCCCBCSSSSCCCCC-------TT
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccCh-------hhccCcc-cCCEeECCCCCCcccCHHHHHhhh-------cc
Confidence            55543334444445555555555554442211       1223333 455555555555444444443321       23


Q ss_pred             cceeeccCCeee
Q 039577          245 LFGLLLGGDALE  256 (282)
Q Consensus       245 l~~L~l~~n~~~  256 (282)
                      |+.|++++|.++
T Consensus       250 L~~L~L~~N~~~  261 (306)
T 2z66_A          250 LAFLNLTQNDFA  261 (306)
T ss_dssp             CCEEECTTCCEE
T ss_pred             CCEEEccCCCee
Confidence            445555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=7.8e-27  Score=195.00  Aligned_cols=251  Identities=16%  Similarity=0.177  Sum_probs=204.0

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|++++|.+.+..|..+..+++|++|++++|.+. .+|..+.  ++|+.|++++|.+. .++...+..+++|++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L  150 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVV  150 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEE
Confidence            578999999999998877889999999999999999987 5676554  89999999999997 5554468899999999


Q ss_pred             EcccCeecc--cCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecC
Q 039577           89 SFSFNKIRG--WIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQN  165 (282)
Q Consensus        89 ~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~  165 (282)
                      ++.+|.+..  ..+..+..+++|++|++++|.++.  +|..+.  ++|++|++++|.+....+..+ .+++|+.|++++|
T Consensus       151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  226 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  226 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             ECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            999998863  456678889999999999999854  665443  899999999999987777666 8899999999999


Q ss_pred             cceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccc
Q 039577          166 NLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESL  245 (282)
Q Consensus       166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l  245 (282)
                      .+++..+..+..+++|++|++++|.++        .+|.++..++ +|++|++++|.+++..+..+.......  ....+
T Consensus       227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~lp~~l~~l~-~L~~L~l~~N~i~~~~~~~f~~~~~~~--~~~~l  295 (330)
T 1xku_A          227 SISAVDNGSLANTPHLRELHLNNNKLV--------KVPGGLADHK-YIQVVYLHNNNISAIGSNDFCPPGYNT--KKASY  295 (330)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSCCS--------SCCTTTTTCS-SCCEEECCSSCCCCCCTTSSSCSSCCT--TSCCC
T ss_pred             cCceeChhhccCCCCCCEEECCCCcCc--------cCChhhccCC-CcCEEECCCCcCCccChhhcCCccccc--ccccc
Confidence            998666667889999999999999887        5566777787 999999999999855555554332111  13678


Q ss_pred             ceeeccCCeeee--ecchhhhccCCCceeeccCcc
Q 039577          246 FGLLLGGDALEG--QIPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       246 ~~L~l~~n~~~~--~~~~~~~~l~~L~~l~l~~n~  278 (282)
                      +.|++++|.+..  ..|..|..+++++.+++++|+
T Consensus       296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cceEeecCcccccccCccccccccceeEEEecccC
Confidence            899999998863  345788889999999999985

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.4e-27  Score=212.65  Aligned_cols=158  Identities=15%  Similarity=0.101  Sum_probs=127.7

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+++..|.++..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEE
Confidence            468999999999998877888999999999999999999877788999999999999999997 4554368899999999


Q ss_pred             EcccCeecc-cCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCc
Q 039577           89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN  166 (282)
Q Consensus        89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~  166 (282)
                      ++++|.+.. ..+..+..+++|++|++++|.......+..+..+++|++|++++|.+....+..+ .+++|+.|+++.|.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            999999874 2456788999999999999974232223567888999999999998877666555 55555555555544


Q ss_pred             c
Q 039577          167 L  167 (282)
Q Consensus       167 ~  167 (282)
                      .
T Consensus       184 ~  184 (549)
T 2z81_A          184 S  184 (549)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=7.5e-27  Score=195.26  Aligned_cols=242  Identities=20%  Similarity=0.213  Sum_probs=192.3

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF   90 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   90 (282)
                      +++.++++++.+. .+|..+.  ++|++|++++|.+....+..+.++++|+.|++++|.+.+..+. .+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence            6889999999886 5776553  7999999999999876677899999999999999999744444 7889999999999


Q ss_pred             ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccc--cCCCCc-CCCCccEEEeecCcc
Q 039577           91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG--HLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      ++|.+. .+|..+.  ++|++|++++|.++ ...+..+..+++|+.|++++|.+..  ..+..+ .+ +|+.|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            999988 5676654  89999999999984 3334458889999999999999863  444444 44 899999999999


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG  247 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~  247 (282)
                      + .+|..+  .++|++|++++|.+++..+       ..+..++ +|++|++++|.+++..+..+..+        ++|++
T Consensus       185 ~-~l~~~~--~~~L~~L~l~~n~i~~~~~-------~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~  245 (332)
T 2ft3_A          185 T-GIPKDL--PETLNELHLDHNKIQAIEL-------EDLLRYS-KLYRLGLGHNQIRMIENGSLSFL--------PTLRE  245 (332)
T ss_dssp             S-SCCSSS--CSSCSCCBCCSSCCCCCCT-------TSSTTCT-TCSCCBCCSSCCCCCCTTGGGGC--------TTCCE
T ss_pred             C-ccCccc--cCCCCEEECCCCcCCccCH-------HHhcCCC-CCCEEECCCCcCCcCChhHhhCC--------CCCCE
Confidence            8 677654  3799999999999884433       3566677 99999999999986666667665        55667


Q ss_pred             eeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       248 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      |++++|.++ .+|..+..+++|+.+++++|+|++
T Consensus       246 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             EECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             EECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence            777777777 667777777777777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=200.80  Aligned_cols=255  Identities=16%  Similarity=0.146  Sum_probs=156.4

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      +++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence            46667777777665544445666677777777776666555555666677777777776665 44443456666777777


Q ss_pred             cccCeecccCCc--CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCc
Q 039577           90 FSFNKIRGWIPQ--KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN  166 (282)
Q Consensus        90 l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~  166 (282)
                      +++|.+. .++.  .+..+++|++|++++|.......+..+..+++|++|++++|.+....+..+ .+++|++|++++|.
T Consensus       131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            7766666 3443  456666777777766632122233445566667777777666665555555 56667777777666


Q ss_pred             ceeeccch-hhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccccee----cCCccccCCccCcccc
Q 039577          167 LCGIVPDS-ICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG----GIPVGFGNLSNMIKCN  241 (282)
Q Consensus       167 ~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~l~~l~  241 (282)
                      +. .+|.. +..+++|++|++++|.+++..+.   .++. ..... .++.++++++.+.+    .+|..+..        
T Consensus       210 l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l~~-~~~~~-~l~~l~L~~~~l~~~~l~~l~~~l~~--------  275 (353)
T 2z80_A          210 HI-LLLEIFVDVTSSVECLELRDTDLDTFHFS---ELST-GETNS-LIKKFTFRNVKITDESLFQVMKLLNQ--------  275 (353)
T ss_dssp             ST-THHHHHHHHTTTEEEEEEESCBCTTCCCC----------CCC-CCCEEEEESCBCCHHHHHHHHHHHHT--------
T ss_pred             cc-cchhhhhhhcccccEEECCCCcccccccc---cccc-ccccc-hhhccccccccccCcchhhhHHHHhc--------
Confidence            64 33332 23456677777777766643322   1110 11122 45556666555442    23333333        


Q ss_pred             ccccceeeccCCeeeeecchh-hhccCCCceeeccCccCCC
Q 039577          242 LESLFGLLLGGDALEGQIPTC-LANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       242 l~~l~~L~l~~n~~~~~~~~~-~~~l~~L~~l~l~~n~~~~  281 (282)
                      +++|++|++++|.++ .+|.. |..+++|+++++++|.+++
T Consensus       276 l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          276 ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            367899999999999 66765 5899999999999999876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=201.07  Aligned_cols=246  Identities=21%  Similarity=0.184  Sum_probs=163.7

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF   90 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   90 (282)
                      ..++++..+..++ .+|..+.  ++++.|++++|.+....+..+.++++|+.|++++|.+. .++...+..+++|++|++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence            3456666666664 4565443  57777777777777666667777777777777777775 444336777777777777


Q ss_pred             ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcc-ccccCCCCc-CCCCccEEEeecCcce
Q 039577           91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH-LSGHLRSSI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~  168 (282)
                      ++|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|+++++. +....+..+ .+++|+.|++++|.++
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            777777433345677777777777777763 2233356667777777777743 333333334 6777777887777776


Q ss_pred             eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577          169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL  248 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L  248 (282)
                       .+|. +..+++|++|++++|.+++..+.       .+..++ +|++|++++|.+++..+..+..+        ++|+.|
T Consensus       199 -~~~~-~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L  260 (440)
T 3zyj_A          199 -EIPN-LTPLIKLDELDLSGNHLSAIRPG-------SFQGLM-HLQKLWMIQSQIQVIERNAFDNL--------QSLVEI  260 (440)
T ss_dssp             -SCCC-CTTCSSCCEEECTTSCCCEECTT-------TTTTCT-TCCEEECTTCCCCEECTTSSTTC--------TTCCEE
T ss_pred             -cccc-cCCCcccCEEECCCCccCccChh-------hhccCc-cCCEEECCCCceeEEChhhhcCC--------CCCCEE
Confidence             5553 56677778888887777644332       445555 77788888777776655555553        567777


Q ss_pred             eccCCeeeeecchhhhccCCCceeeccCccC
Q 039577          249 LLGGDALEGQIPTCLANLTSLISLNLRSIRL  279 (282)
Q Consensus       249 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~  279 (282)
                      ++++|.+++..+..|..+++|+.+++++|.+
T Consensus       261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             ECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             ECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            7777777755556677777788888877765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=5.1e-27  Score=207.76  Aligned_cols=258  Identities=18%  Similarity=0.120  Sum_probs=188.9

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF   92 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   92 (282)
                      +++++++|.++ .+|..+.  ++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|. .+..+++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCC
Confidence            57999999997 5787666  8999999999999876667889999999999999999744454 789999999999999


Q ss_pred             CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCc--cEEEeecCcc--e
Q 039577           93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNL--ENLFLWQNNL--C  168 (282)
Q Consensus        93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~  168 (282)
                      |.+. .+|..  .+++|++|++++|.++....|..+..+++|++|++++|.+......  .+++|  +.|++++|.+  .
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL--PIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGG--GGTTSCEEEEEEEECTTTTS
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhcc--ccccceeeEEEeeccccccc
Confidence            9998 56665  7999999999999985445678899999999999999988642211  45555  7777777766  3


Q ss_pred             eeccchhhC-----------------------------------------------------------------------
Q 039577          169 GIVPDSICN-----------------------------------------------------------------------  177 (282)
Q Consensus       169 ~~~~~~l~~-----------------------------------------------------------------------  177 (282)
                      +..|..+..                                                                       
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  233 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT  233 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence            233322222                                                                       


Q ss_pred             ------------CCCCcEEeccCcccceecCCCC-----CC---------------CCC-c-------------------
Q 039577          178 ------------ASEVTILELSKNLFSCLIPNTS-----GV---------------FPN-S-------------------  205 (282)
Q Consensus       178 ------------~~~L~~L~l~~~~~~~~~~~~~-----~~---------------l~~-~-------------------  205 (282)
                                  .++|++|++++|.+++.+|...     +.               +|. .                   
T Consensus       234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~  313 (520)
T 2z7x_B          234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR  313 (520)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence                        1266777777777765555432     11               110 0                   


Q ss_pred             ------ccccccccceEEeecccceecCCccccCCccCcccc------------------ccccceeeccCCeeeeecch
Q 039577          206 ------IGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN------------------LESLFGLLLGGDALEGQIPT  261 (282)
Q Consensus       206 ------~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~------------------l~~l~~L~l~~n~~~~~~~~  261 (282)
                            ...++ +|++|++++|.+++.+|..+..+++|+.|+                  +++|+.|++++|.+++.+|.
T Consensus       314 l~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~  392 (520)
T 2z7x_B          314 MVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK  392 (520)
T ss_dssp             CCCCCCCSSCC-CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred             cccccchhhCC-cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence                  03445 788888888888876777777777776665                  45677777777777765554


Q ss_pred             h-hhccCCCceeeccCccCC
Q 039577          262 C-LANLTSLISLNLRSIRLN  280 (282)
Q Consensus       262 ~-~~~l~~L~~l~l~~n~~~  280 (282)
                      . +..+++|+++++++|+++
T Consensus       393 ~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          393 GDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             CSCCCCTTCCEEECCSSCCC
T ss_pred             chhccCccCCEEECcCCCCC
Confidence            3 556667777777777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=207.82  Aligned_cols=110  Identities=18%  Similarity=0.050  Sum_probs=61.4

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence            456777777777776555556667777777777777666554555666666666666666654 2332244455555555


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCC
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  119 (282)
                      ++.+|.+....+..++.+++|++|++++|.+
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  136 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLI  136 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCC
T ss_pred             cccccccccCCCccccccccccEEecCCCcc
Confidence            5554444421111234444444444444433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.6e-27  Score=194.33  Aligned_cols=247  Identities=22%  Similarity=0.205  Sum_probs=202.0

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCc-cccCCCCCcEEEcCCCccccc--CCCCccCCCCCccEEE
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPN-ELWQLQRLRIVDLSSGIIPGS--LPDDTSGDCIMLRRLS   89 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~   89 (282)
                      ++++.+++.++ .+|..+.  ++|++|++++|.+. .+|. .+.++++|+.|++++|.+...  .+. .+..+++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-HHHSCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCccc-ccccccccCEEE
Confidence            46888888775 5665443  69999999999998 4554 467999999999999998621  133 455789999999


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  168 (282)
                      +++|.+. .++..+..+++|++|++++|.++.......+..+++|++|++++|.+....+..+ .+++|++|++++|.+.
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            9999988 4677788999999999999998442222467889999999999999987777666 7899999999999987


Q ss_pred             e-eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577          169 G-IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG  247 (282)
Q Consensus       169 ~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~  247 (282)
                      + ..|..+..+++|++|++++|.+++..+.       .+..++ +|++|++++|.+++..+..+..+        ++|+.
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~  227 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPT-------AFNSLS-SLQVLNMSHNNFFSLDTFPYKCL--------NSLQV  227 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTT-------TTTTCT-TCCEEECTTSCCSBCCSGGGTTC--------TTCCE
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHH-------HhcCCC-CCCEEECCCCccCccChhhccCc--------ccCCE
Confidence            5 4788888999999999999999865443       555666 99999999999985555455543        67899


Q ss_pred             eeccCCeeeeecchhhhccC-CCceeeccCccCCC
Q 039577          248 LLLGGDALEGQIPTCLANLT-SLISLNLRSIRLNS  281 (282)
Q Consensus       248 L~l~~n~~~~~~~~~~~~l~-~L~~l~l~~n~~~~  281 (282)
                      |++++|.+++..+..+..++ +|+++++++|.+++
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            99999999988888999985 99999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=206.79  Aligned_cols=155  Identities=19%  Similarity=0.151  Sum_probs=111.8

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|++++|.+.+..+.+|.++++|++|++++|.+....|..+..+++|++|++++|.+. .++...++.+++|++|
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  129 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKEL  129 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEE
T ss_pred             CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEE
Confidence            467888888888887666677888888888888888887666677888888888888888876 5554357788888888


Q ss_pred             EcccCeecc-cCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCC----cEEEecCccccccCCCCcCCCCccEEEee
Q 039577           89 SFSFNKIRG-WIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI----QVIILYGNHLSGHLRSSIYLPNLENLFLW  163 (282)
Q Consensus        89 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  163 (282)
                      ++++|.+.. .+|..+..+++|++|++++|.+ ....+..+..+.+|    +.+++++|.+....+..+...+|+.++++
T Consensus       130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  208 (570)
T 2z63_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR  208 (570)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred             ecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence            888888774 3577788888888888888877 33334455555555    67777777766555544433355555555


Q ss_pred             cC
Q 039577          164 QN  165 (282)
Q Consensus       164 ~~  165 (282)
                      +|
T Consensus       209 ~n  210 (570)
T 2z63_A          209 NN  210 (570)
T ss_dssp             SC
T ss_pred             cc
Confidence            44

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=2e-26  Score=193.79  Aligned_cols=247  Identities=20%  Similarity=0.241  Sum_probs=108.2

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      +++++|+++++.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+. .++  .+..+++|++|+
T Consensus        44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~~L~  116 (347)
T 4fmz_A           44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLRELY  116 (347)
T ss_dssp             TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEE
T ss_pred             ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-Cch--HHcCCCcCCEEE
Confidence            344555555554432 22 24445555555555554442 222 444455555555554443 222  244444455554


Q ss_pred             cccCeeccc---------------------CCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccC
Q 039577           90 FSFNKIRGW---------------------IPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL  148 (282)
Q Consensus        90 l~~~~~~~~---------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  148 (282)
                      +++|.+...                     ....+..+++|++|++++|.+..  .+. +..+++|+.|++++|.+....
T Consensus       117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~-~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD--VTP-IANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred             CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC--chh-hccCCCCCEEEccCCcccccc
Confidence            444444421                     11123334444444444443311  111 334444555555444443222


Q ss_pred             CCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577          149 RSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP  228 (282)
Q Consensus       149 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~  228 (282)
                      + ...+++|+.+++++|.+. ..+. +..+++|++|++++|.+++.        +. +..++ +|++|++++|.+++ + 
T Consensus       194 ~-~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~n~l~~~--------~~-~~~l~-~L~~L~l~~n~l~~-~-  258 (347)
T 4fmz_A          194 P-LASLTSLHYFTAYVNQIT-DITP-VANMTRLNSLKIGNNKITDL--------SP-LANLS-QLTWLEIGTNQISD-I-  258 (347)
T ss_dssp             G-GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCC--------GG-GTTCT-TCCEEECCSSCCCC-C-
T ss_pred             c-ccCCCccceeecccCCCC-CCch-hhcCCcCCEEEccCCccCCC--------cc-hhcCC-CCCEEECCCCccCC-C-
Confidence            1 013334444444444333 1111 33444555555555544321        11 33333 45555555544442 1 


Q ss_pred             ccccCCccCcccc--------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          229 VGFGNLSNMIKCN--------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       229 ~~~~~l~~l~~l~--------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      ..+..+++|+.|+              +++|++|++++|.+++..+..+..+++|+++++++|++++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            2233444444333              3456666666666665555566666666666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.5e-26  Score=201.21  Aligned_cols=245  Identities=21%  Similarity=0.185  Sum_probs=139.0

Q ss_pred             eEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577           12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS   91 (282)
Q Consensus        12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   91 (282)
                      .+.++..+..++ .+|..+.  +++++|++++|.+....+..+.++++|+.|++++|.+. .++...+..+++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECC
Confidence            345555555553 3454333  46666666666666555556666666666666666665 3333355666666666666


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcc-ccccCCCCc-CCCCccEEEeecCccee
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH-LSGHLRSSI-YLPNLENLFLWQNNLCG  169 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~~  169 (282)
                      +|.+....+..+..+++|++|++++|.++ ...+..+..+++|+.|+++++. +.......+ .+++|+.|++++|.++ 
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  209 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-  209 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence            66666433334556666666666666652 2222345556666666666533 222222233 5666666666666665 


Q ss_pred             eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceee
Q 039577          170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLL  249 (282)
Q Consensus       170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~  249 (282)
                      .+| .+..+++|++|++++|.+++..+       ..+..++ +|++|++++|.+.+..+..+..+        ++|+.|+
T Consensus       210 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~  272 (452)
T 3zyi_A          210 DMP-NLTPLVGLEELEMSGNHFPEIRP-------GSFHGLS-SLKKLWVMNSQVSLIERNAFDGL--------ASLVELN  272 (452)
T ss_dssp             SCC-CCTTCTTCCEEECTTSCCSEECG-------GGGTTCT-TCCEEECTTSCCCEECTTTTTTC--------TTCCEEE
T ss_pred             ccc-cccccccccEEECcCCcCcccCc-------ccccCcc-CCCEEEeCCCcCceECHHHhcCC--------CCCCEEE
Confidence            444 24556666666666666653322       2444555 66666666666665555544443        4566666


Q ss_pred             ccCCeeeeecchhhhccCCCceeeccCccC
Q 039577          250 LGGDALEGQIPTCLANLTSLISLNLRSIRL  279 (282)
Q Consensus       250 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~  279 (282)
                      +++|.+++..+..|..+++|+.+++++|.+
T Consensus       273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            666666644445566666666666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.1e-26  Score=188.50  Aligned_cols=181  Identities=21%  Similarity=0.228  Sum_probs=80.9

Q ss_pred             CCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-ecccCCcCCcCCCCceEE
Q 039577           34 SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-IRGWIPQKIGNLTELVEL  112 (282)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L  112 (282)
                      ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|. +....+..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            3455555555554443333444455555555555544422222 44445555555555543 332223344444555555


Q ss_pred             EecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccc
Q 039577          113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF  191 (282)
Q Consensus       113 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  191 (282)
                      ++++|.+ ....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       111 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcC-CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            5555544 22223334444555555555554443333333 444555555555544422222344445555555555544


Q ss_pred             ceecCCCCCCCCCcccccccccceEEeecccce
Q 039577          192 SCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS  224 (282)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~  224 (282)
                      ++..+.       .+..++ +|++|++++|.++
T Consensus       190 ~~~~~~-------~~~~l~-~L~~L~l~~n~l~  214 (285)
T 1ozn_A          190 AHVHPH-------AFRDLG-RLMTLYLFANNLS  214 (285)
T ss_dssp             CEECTT-------TTTTCT-TCCEEECCSSCCS
T ss_pred             cccCHh-------HccCcc-cccEeeCCCCcCC
Confidence            433222       233333 4555555555444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=7.4e-26  Score=204.52  Aligned_cols=134  Identities=20%  Similarity=0.093  Sum_probs=109.4

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      |..+++|+|++|.+++..+.+|.++++|++|+|++|.+....+..+.++++|++|++++|.+. .++...|..+++|++|
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            578999999999998766678999999999999999998766677889999999999999987 6666578899999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH  143 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  143 (282)
                      ++++|.+....+..++.+++|++|++++|.++....|..+..+++|++|++++|.
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            9999988854444578888899999988887544456666667777777766554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=2.8e-26  Score=204.80  Aligned_cols=259  Identities=17%  Similarity=0.086  Sum_probs=186.7

Q ss_pred             eEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577           12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS   91 (282)
Q Consensus        12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   91 (282)
                      .++++++++.+++ +|..+.  ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..|. .+..+++|++|+++
T Consensus        33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVS  108 (562)
T ss_dssp             CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECT
T ss_pred             CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECC
Confidence            3899999999975 777554  8999999999999876667899999999999999999844444 88999999999999


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCc--cEEEeecCcc--
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNL--ENLFLWQNNL--  167 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--  167 (282)
                      +|.+. .+|..  .+++|++|++++|.++....|..+.++++|++|++++|.+......  .+++|  +.|++++|.+  
T Consensus       109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL--PVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG--GGTTSCEEEEEEEESSCCC
T ss_pred             CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh--hhhhceeeEEEeecccccc
Confidence            99998 57766  7999999999999985434557889999999999999988643222  34444  8888887766  


Q ss_pred             eeeccchhhC----------------------------------------------------------------------
Q 039577          168 CGIVPDSICN----------------------------------------------------------------------  177 (282)
Q Consensus       168 ~~~~~~~l~~----------------------------------------------------------------------  177 (282)
                      ++..|..+..                                                                      
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence            3222221111                                                                      


Q ss_pred             -----------CCCCcEEeccCcccceecCCCC-----CC---------------CCC----------------------
Q 039577          178 -----------ASEVTILELSKNLFSCLIPNTS-----GV---------------FPN----------------------  204 (282)
Q Consensus       178 -----------~~~L~~L~l~~~~~~~~~~~~~-----~~---------------l~~----------------------  204 (282)
                                 .++|++|++++|.+++.+|...     ..               +|.                      
T Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~  343 (562)
T 3a79_B          264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF  343 (562)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence                       1266777777777766555432     00               010                      


Q ss_pred             ---cc-cccccccceEEeecccceecCCccccCCccCcccc------------------ccccceeeccCCeeeeecch-
Q 039577          205 ---SI-GNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN------------------LESLFGLLLGGDALEGQIPT-  261 (282)
Q Consensus       205 ---~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~------------------l~~l~~L~l~~n~~~~~~~~-  261 (282)
                         .+ ..++ +|++|++++|.+++.+|..+..+++|+.|+                  +++|+.|++++|.+++.+|. 
T Consensus       344 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          344 IHMVCPPSPS-SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             CCCCCCSSCC-CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred             ccccCccCCC-CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence               00 3444 788888888888876777777777666665                  35677777777777764554 


Q ss_pred             hhhccCCCceeeccCccCC
Q 039577          262 CLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       262 ~~~~l~~L~~l~l~~n~~~  280 (282)
                      .+..+++|+++++++|+|+
T Consensus       423 ~~~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLT  441 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCC
T ss_pred             hhcCcccCCEEECCCCCCC
Confidence            3556666666666666664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=1.7e-26  Score=197.21  Aligned_cols=252  Identities=18%  Similarity=0.160  Sum_probs=169.4

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|++++|.+.+..+.++..+++|++|++++|.+.+..|..+..+++|+.|++++|.+. .+|...+..+++|++|
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence            368999999999998766778999999999999999998766777889999999999999997 7777567899999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCC-------------------cEEEecCccccccCC
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI-------------------QVIILYGNHLSGHLR  149 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------------------~~L~l~~~~~~~~~~  149 (282)
                      ++++|.+....+..+..+++|++|++++|.++.  .+  +..+++|                   +.|++++|.+.....
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~  222 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  222 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB--CC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCc--cc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence            999999886556678899999999999998743  21  2233333                   333333333322211


Q ss_pred             CCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCc
Q 039577          150 SSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV  229 (282)
Q Consensus       150 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~  229 (282)
                      .  ..++|+.|++++|.++ .. ..+..+++|++|++++|.+.+..+       ..+..++ +|++|++++|.+++ +|.
T Consensus       223 ~--~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~-~L~~L~L~~n~l~~-~~~  289 (390)
T 3o6n_A          223 P--VNVELTILKLQHNNLT-DT-AWLLNYPGLVEVDLSYNELEKIMY-------HPFVKMQ-RLERLYISNNRLVA-LNL  289 (390)
T ss_dssp             C--CCSSCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCEEES-------GGGTTCS-SCCEEECCSSCCCE-EEC
T ss_pred             c--ccccccEEECCCCCCc-cc-HHHcCCCCccEEECCCCcCCCcCh-------hHccccc-cCCEEECCCCcCcc-cCc
Confidence            1  1234555555555554 22 234445555555555555443222       1233333 44555555444442 233


Q ss_pred             cccCCccCcccc---------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          230 GFGNLSNMIKCN---------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       230 ~~~~l~~l~~l~---------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      .+..+++|+.|+               +++|+.|++++|.+++ ++  +..+++|+++++++|.+++
T Consensus       290 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred             ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccc
Confidence            333344444443               4689999999999984 33  7788999999999998753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.1e-25  Score=195.78  Aligned_cols=230  Identities=18%  Similarity=0.097  Sum_probs=193.0

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL  152 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence            568999999999999888889999999999999999999877788999999999999999997 6776578999999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC  168 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (282)
                      ++++|.+....+..+..+++|++|+++++.......+..+..+++|++|++++|.+... +....+++|+.|++++|.++
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCS
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCc
Confidence            99999998655557889999999999985442322334577899999999999999855 33337899999999999999


Q ss_pred             eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577          169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL  248 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L  248 (282)
                      +..|..+..+++|++|++++|.+++..+.       .+..++ +|++|++++|.+++..+..+..+        ++|+.|
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L  295 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERN-------AFDGLA-SLVELNLAHNNLSSLPHDLFTPL--------RYLVEL  295 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTT-------TTTTCT-TCCEEECCSSCCSCCCTTSSTTC--------TTCCEE
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHH-------HhcCCC-CCCEEECCCCcCCccChHHhccc--------cCCCEE
Confidence            77788899999999999999999865443       455666 99999999999985555555554        567888


Q ss_pred             eccCCeee
Q 039577          249 LLGGDALE  256 (282)
Q Consensus       249 ~l~~n~~~  256 (282)
                      ++++|.+.
T Consensus       296 ~L~~Np~~  303 (452)
T 3zyi_A          296 HLHHNPWN  303 (452)
T ss_dssp             ECCSSCEE
T ss_pred             EccCCCcC
Confidence            88888765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=2.6e-26  Score=213.94  Aligned_cols=111  Identities=22%  Similarity=0.173  Sum_probs=87.6

Q ss_pred             CCceEEEEcCCCccccCC-CccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCC-CccCCCCCcc
Q 039577            9 HRRVTALSLPNLTLGGTI-PPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPD-DTSGDCIMLR   86 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~   86 (282)
                      ..++++|++++|...+.+ |.+|.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++. ..+..+++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            467888999888666665 66788888999999998888877788888888999999988888755543 2477888888


Q ss_pred             EEEcccCeecccCC-cCCcCCCCceEEEecCCCC
Q 039577           87 RLSFSFNKIRGWIP-QKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        87 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  119 (282)
                      +|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            88888888775433 4578888888888888876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=1.9e-26  Score=205.35  Aligned_cols=109  Identities=15%  Similarity=0.063  Sum_probs=62.9

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccc-cCCCCccCCCCCccE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPG-SLPDDTSGDCIMLRR   87 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~   87 (282)
                      .+++++|++++|.+.+..|.+|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+. .+..+++|++
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~  127 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQT  127 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccE
Confidence            3567777777777766666667777777777777777765444446667777777777776653 1222 4555556666


Q ss_pred             EEcccCeecccCC-cCCcCCCCceEEEecCCC
Q 039577           88 LSFSFNKIRGWIP-QKIGNLTELVELYLDGNN  118 (282)
Q Consensus        88 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~  118 (282)
                      |++.+|...+.++ ..+..+++|++|++++|.
T Consensus       128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             EECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            6655554221222 234444444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=1e-25  Score=189.44  Aligned_cols=244  Identities=23%  Similarity=0.321  Sum_probs=156.9

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCccc------------------
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP------------------   71 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------------------   71 (282)
                      +++++|++++|.+++ ++. +..+++|++|++++|.+.. + +.+..+++|++|++++|.+.                  
T Consensus        66 ~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           66 TNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGA  141 (347)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTT
T ss_pred             CCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCC
Confidence            456666666665543 222 5555555555555555442 2 23444555555555554443                  


Q ss_pred             ----ccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc
Q 039577           72 ----GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH  147 (282)
Q Consensus        72 ----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  147 (282)
                          ..++  .+..+++|++|++.+|.+.. .+. +..+++|++|++++|.+..  .+. +..+++|+.+++++|.+...
T Consensus       142 n~~~~~~~--~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          142 NHNLSDLS--PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             CTTCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCccccc--chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCC
Confidence                1211  25566777777777777663 232 6778889999999888743  443 66778888888888877644


Q ss_pred             CCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecC
Q 039577          148 LRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI  227 (282)
Q Consensus       148 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~  227 (282)
                      .+ ...+++|++|++++|.++ .++. +..+++|++|++++|.+++.         +.+..++ +|++|++++|.+++ +
T Consensus       215 ~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~---------~~~~~l~-~L~~L~l~~n~l~~-~  280 (347)
T 4fmz_A          215 TP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI---------NAVKDLT-KLKMLNVGSNQISD-I  280 (347)
T ss_dssp             GG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC---------GGGTTCT-TCCEEECCSSCCCC-C
T ss_pred             ch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCC---------hhHhcCC-CcCEEEccCCccCC-C
Confidence            33 126777888888888776 4444 66777888888888776631         1344455 77777777777663 2


Q ss_pred             CccccCCccCcccc----------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          228 PVGFGNLSNMIKCN----------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       228 ~~~~~~l~~l~~l~----------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                       +.+..+++|+.|+                +++|++|++++|.+++..|  +..+++|+++++++|.|+.
T Consensus       281 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred             -hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence             3456666666665                5789999999999996655  8899999999999999873

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.3e-25  Score=193.22  Aligned_cols=230  Identities=17%  Similarity=0.092  Sum_probs=192.5

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      +..++.|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence            578999999999998877788999999999999999998777778889999999999999997 6776578999999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC  168 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (282)
                      ++++|.+....+..+..+++|++|+++++.......+..+..+++|++|++++|.+... +....+++|+.|++++|.++
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCC
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cccCCCcccCEEECCCCccC
Confidence            99999998655567889999999999985542322334678899999999999999844 33337899999999999998


Q ss_pred             eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577          169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL  248 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L  248 (282)
                      +..|..+..+++|++|++++|.+++..+.       .+..++ +|++|++++|.+++..+..+..+        ++|+.|
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L  284 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERN-------AFDNLQ-SLVEINLAHNNLTLLPHDLFTPL--------HHLERI  284 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTT-------SSTTCT-TCCEEECTTSCCCCCCTTTTSSC--------TTCCEE
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChh-------hhcCCC-CCCEEECCCCCCCccChhHhccc--------cCCCEE
Confidence            77788899999999999999999865443       455666 99999999999985555555554        567888


Q ss_pred             eccCCeee
Q 039577          249 LLGGDALE  256 (282)
Q Consensus       249 ~l~~n~~~  256 (282)
                      ++++|.+.
T Consensus       285 ~L~~Np~~  292 (440)
T 3zyj_A          285 HLHHNPWN  292 (440)
T ss_dssp             ECCSSCEE
T ss_pred             EcCCCCcc
Confidence            88888775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-25  Score=201.57  Aligned_cols=237  Identities=19%  Similarity=0.216  Sum_probs=168.2

Q ss_pred             CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceE
Q 039577           32 NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE  111 (282)
Q Consensus        32 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  111 (282)
                      .+.+++.++++++.+....+..+..+++|+.|++++|.+.+ ++...+..+++|++|++++|.+.+..+..++.+++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            46789999999998875444446789999999999999974 44447899999999999999999766667899999999


Q ss_pred             EEecCCCCCCCCCCc-cccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCc
Q 039577          112 LYLDGNNLQAGLLPS-VIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN  189 (282)
Q Consensus       112 L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  189 (282)
                      |++++|.++.  +|. .+..+++|++|++++|.+....+..+ .+++|+.|++++|.++ .++  +..+++|+.|++++|
T Consensus       128 L~L~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          128 LVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSS
T ss_pred             EEeeCCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccC
Confidence            9999999843  554 46889999999999999988877767 8999999999999987 333  455677888877777


Q ss_pred             ccceecC-CC----------CCCCCCcccccccccceEEeecccceecCCccccCCccCcccc----------------c
Q 039577          190 LFSCLIP-NT----------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN----------------L  242 (282)
Q Consensus       190 ~~~~~~~-~~----------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~----------------l  242 (282)
                      .+++... ..          ...++..   .+.+|+.|++++|.+++  +.++..+++|+.|+                +
T Consensus       203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          203 LLSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             CCSEEECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ccccccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence            7664211 10          0011111   11367888888887764  34566655554444                3


Q ss_pred             cccceeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          243 ESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       243 ~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      ++|+.|++++|.+++ +|..+..+++|+.|++++|.++
T Consensus       278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence            345555555555552 3444444555555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.5e-27  Score=195.96  Aligned_cols=234  Identities=18%  Similarity=0.142  Sum_probs=133.2

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      +++++|++++|.+.+..|..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++     ..++|++|+
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCCEEE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcCEEE
Confidence            456666666666655444556666666666666666654332  556666666666666664 222     235666666


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc--CCCCccEEEeecCcc
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNL  167 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~  167 (282)
                      +++|.+....+.   .+++|++|++++|.+ ....+..+..+++|++|++++|.+....+..+  .+++|+.|++++|.+
T Consensus       106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          106 AANNNISRVSCS---RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             CCSSCCSEEEEC---CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CCCCccCCcCcc---ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            666666532221   245566666666666 22223345556666666666666654443333  356666666666666


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG  247 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~  247 (282)
                      + .++.. ..+++|++|++++|.+++        +|..+..++ +|++|++++|.++ .+|..+..+        ++|+.
T Consensus       182 ~-~~~~~-~~l~~L~~L~Ls~N~l~~--------l~~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~l--------~~L~~  241 (317)
T 3o53_A          182 Y-DVKGQ-VVFAKLKTLDLSSNKLAF--------MGPEFQSAA-GVTWISLRNNKLV-LIEKALRFS--------QNLEH  241 (317)
T ss_dssp             C-EEECC-CCCTTCCEEECCSSCCCE--------ECGGGGGGT-TCSEEECTTSCCC-EECTTCCCC--------TTCCE
T ss_pred             c-ccccc-cccccCCEEECCCCcCCc--------chhhhcccC-cccEEECcCCccc-chhhHhhcC--------CCCCE
Confidence            5 33322 235666666666666652        233344555 6666666666665 345444332        45666


Q ss_pred             eeccCCeee-eecchhhhccCCCceeecc
Q 039577          248 LLLGGDALE-GQIPTCLANLTSLISLNLR  275 (282)
Q Consensus       248 L~l~~n~~~-~~~~~~~~~l~~L~~l~l~  275 (282)
                      |++++|.+. +.++.++..+++|+.++++
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECC
Confidence            666666666 5555666666666666655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.3e-25  Score=181.36  Aligned_cols=250  Identities=19%  Similarity=0.173  Sum_probs=201.6

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc-ccccCCCCccCCCCCccE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI-IPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~   87 (282)
                      ++++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|. +. .++...+..+++|++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCE
Confidence            6789999999999987666788999999999999999987778889999999999999997 65 665447889999999


Q ss_pred             EEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCc
Q 039577           88 LSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN  166 (282)
Q Consensus        88 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~  166 (282)
                      |++.+|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence            999999998666777889999999999999984 3334457889999999999999987766656 78999999999999


Q ss_pred             ceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCc-cccCCccCcccccccc
Q 039577          167 LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV-GFGNLSNMIKCNLESL  245 (282)
Q Consensus       167 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~~l~l~~l  245 (282)
                      +++..|..+..+++|++|++++|.+++..+       ..+..++ +|+.|++++|.+...-+. ++          ...+
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~-~L~~L~l~~N~~~c~~~~~~~----------~~~l  250 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANNLSALPT-------EALAPLR-ALQYLRLNDNPWVCDCRARPL----------WAWL  250 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCH-------HHHTTCT-TCCEEECCSSCEECSGGGHHH----------HHHH
T ss_pred             ccccCHhHccCcccccEeeCCCCcCCcCCH-------HHcccCc-ccCEEeccCCCccCCCCcHHH----------HHHH
Confidence            987778889999999999999998874321       2466677 999999999988743221 11          1224


Q ss_pred             ceeeccCCeeeeecchhhhc--cCCCceeeccCcc
Q 039577          246 FGLLLGGDALEGQIPTCLAN--LTSLISLNLRSIR  278 (282)
Q Consensus       246 ~~L~l~~n~~~~~~~~~~~~--l~~L~~l~l~~n~  278 (282)
                      +.+....+.+....|+.+..  +..+...++.+|.
T Consensus       251 ~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          251 QKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             HHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             HhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            45556667777788887764  5667777777663

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=4e-26  Score=192.40  Aligned_cols=246  Identities=18%  Similarity=0.160  Sum_probs=193.1

Q ss_pred             EEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe
Q 039577           15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK   94 (282)
Q Consensus        15 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~   94 (282)
                      .+.+++.++ .+|..+.  ++|++|++++|.+....+..+.++++|+.|++++|.+.+ ++...+..+++|++|++++|.
T Consensus        36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC
T ss_pred             eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCc
Confidence            788888775 5676554  599999999999987656688999999999999999974 444378999999999999999


Q ss_pred             ecccCCcC-CcCCCCceEEEecCCCCCCCCCCc--cccCCCCCcEEEecCcc-ccccCCCCc-CCCCccEEEeecCccee
Q 039577           95 IRGWIPQK-IGNLTELVELYLDGNNLQAGLLPS--VIFNSSNIQVIILYGNH-LSGHLRSSI-YLPNLENLFLWQNNLCG  169 (282)
Q Consensus        95 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~~  169 (282)
                      +.. ++.. +..+++|++|++++|.++.  ++.  .+..+++|++|++++|. +....+..+ .+++|++|++++|.+++
T Consensus       112 l~~-~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          112 LSN-LSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             CSS-CCHHHHTTCTTCSEEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCc-CCHhHhCCCccCCEEECCCCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            984 5554 7889999999999999854  554  67889999999999984 665555556 78999999999999987


Q ss_pred             eccchhhCCCCCcEEeccCcccceecCCCCCCCCCccc-ccccccceEEeecccceecCCccccCCccCcccccccccee
Q 039577          170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIG-NLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGL  248 (282)
Q Consensus       170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L  248 (282)
                      ..|..+..+++|++|++++|.+.        .+|..+. .++ +|++|++++|.+++..+..+......     ..++.+
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~--------~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~~-----~~l~~l  254 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHI--------LLLEIFVDVTS-SVECLELRDTDLDTFHFSELSTGETN-----SLIKKF  254 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCST--------THHHHHHHHTT-TEEEEEEESCBCTTCCCC------CC-----CCCCEE
T ss_pred             cCHHHHhccccCCeecCCCCccc--------cchhhhhhhcc-cccEEECCCCcccccccccccccccc-----chhhcc
Confidence            77888999999999999999875        3333333 355 99999999999986554444332222     345556


Q ss_pred             eccCCeeee----ecchhhhccCCCceeeccCccCCC
Q 039577          249 LLGGDALEG----QIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       249 ~l~~n~~~~----~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      +++++.+.+    .+|..+..+++|+++++++|+|++
T Consensus       255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence            666665554    477889999999999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1e-27  Score=198.81  Aligned_cols=247  Identities=17%  Similarity=0.120  Sum_probs=194.6

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcc-eeeCCcccc-------CCCCCcEEEcCCCcccccCCCCcc-C
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSF-YGTLPNELW-------QLQRLRIVDLSSGIIPGSLPDDTS-G   80 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~-~   80 (282)
                      ++++++++++|.+  .+|..+...  |+.|++++|.+ ...+|..+.       ++++|++|++++|.+.+.+|...+ .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            4677788888888  667666543  88899999988 445666555       789999999999999877887333 8


Q ss_pred             CCCCccEEEcccCeecccCCcCCcCC-----CCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc---CCCC-
Q 039577           81 DCIMLRRLSFSFNKIRGWIPQKIGNL-----TELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH---LRSS-  151 (282)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~-  151 (282)
                      .+++|++|++++|.+.+. |..+..+     ++|++|++++|.+ ....+..+..+++|++|++++|.+...   +... 
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            899999999999999864 6666665     8999999999998 444557788999999999999986532   1111 


Q ss_pred             -cCCCCccEEEeecCccee--ecc-chhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecC
Q 039577          152 -IYLPNLENLFLWQNNLCG--IVP-DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI  227 (282)
Q Consensus       152 -~~~~~L~~L~l~~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~  227 (282)
                       ..+++|++|++++|.+++  .++ ..+..+++|++|++++|.+++..|.      ..+..++ +|++|++++|.++ .+
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~~l~-~L~~L~Ls~N~l~-~i  268 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA------PSCDWPS-QLNSLNLSFTGLK-QV  268 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC------SCCCCCT-TCCEEECTTSCCS-SC
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch------hhhhhcC-CCCEEECCCCccC-hh
Confidence             268999999999999872  222 2345678999999999999865432      1233345 9999999999998 77


Q ss_pred             CccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCCCC
Q 039577          228 PVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNST  282 (282)
Q Consensus       228 ~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  282 (282)
                      |..+.          ++|++|++++|.+++. |. +..+++|+++++++|+|+++
T Consensus       269 p~~~~----------~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          269 PKGLP----------AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CSSCC----------SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             hhhcc----------CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            77653          4789999999999955 66 89999999999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=5.7e-25  Score=192.05  Aligned_cols=170  Identities=25%  Similarity=0.304  Sum_probs=98.7

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|++++|.+++. +. +..+++|++|++++|.+.+. ++ +.++++|+.|++++|.+. .++.  +..+++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEE
T ss_pred             hcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEE
Confidence            45777788877777643 33 67777788888877777643 33 677788888888887775 3432  6677777777


Q ss_pred             EcccCeecccCCc--------------------CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccC
Q 039577           89 SFSFNKIRGWIPQ--------------------KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL  148 (282)
Q Consensus        89 ~l~~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  148 (282)
                      ++++|.+.. ++.                    .+..+++|++|++++|.++.  ++ .+..+++|++|++++|.+....
T Consensus       140 ~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~~~~  215 (466)
T 1o6v_A          140 ELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--IS-VLAKLTNLESLIATNNQISDIT  215 (466)
T ss_dssp             EEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred             ECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC--Ch-hhccCCCCCEEEecCCcccccc
Confidence            777777653 221                    13344555555555555422  22 2445555666666555554332


Q ss_pred             CCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccc
Q 039577          149 RSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS  192 (282)
Q Consensus       149 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  192 (282)
                      + ...+++|+.|++++|.++ .++ .+..+++|++|++++|.+.
T Consensus       216 ~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          216 P-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             G-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCC
T ss_pred             c-ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccc
Confidence            2 113555555555555554 222 3444555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=7.5e-25  Score=191.30  Aligned_cols=247  Identities=23%  Similarity=0.297  Sum_probs=126.5

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCC-------------
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPD-------------   76 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------------   76 (282)
                      +++++|++++|.+.+..+  +..+++|++|++++|.+.. ++. +.++++|+.|++++|.+.+ ++.             
T Consensus        90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~  164 (466)
T 1o6v_A           90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG  164 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE
T ss_pred             ccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC
Confidence            455566666555543222  5555555555555555442 221 4444555555554444321 110             


Q ss_pred             ------CccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCC--------------------CCCCccccC
Q 039577           77 ------DTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA--------------------GLLPSVIFN  130 (282)
Q Consensus        77 ------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------------~~~~~~~~~  130 (282)
                            ..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+..                    ..+ ..+..
T Consensus       165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~  241 (466)
T 1o6v_A          165 NQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLAS  241 (466)
T ss_dssp             ESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGG
T ss_pred             CcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhc
Confidence                  013344455555555555442 1 223444444444444444421                    002 12344


Q ss_pred             CCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccc
Q 039577          131 SSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLS  210 (282)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~  210 (282)
                      +++|+.|++++|.+....+ ...+++|+.|++++|.++ .++. +..+++|++|++++|.+.+        ++. +..++
T Consensus       242 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~--------~~~-~~~l~  309 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQLED--------ISP-ISNLK  309 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCSC--------CGG-GGGCT
T ss_pred             CCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccC-cccc-ccCCCccCeEEcCCCcccC--------chh-hcCCC
Confidence            4555555555555443322 114555555555555554 2222 4455556666666555542        111 44555


Q ss_pred             cccceEEeecccceecCCccccCCccCcccc--------------ccccceeeccCCeeeeecchhhhccCCCceeeccC
Q 039577          211 TSLENFYASSCQLSGGIPVGFGNLSNMIKCN--------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS  276 (282)
Q Consensus       211 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~--------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~  276 (282)
                       +|++|++++|.+++..|  +..+++|+.|+              +++|+.|++++|.+++..|  +..+++|+.+++++
T Consensus       310 -~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          310 -NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  384 (466)
T ss_dssp             -TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred             -CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence             77777777777664433  45555555554              4567777777777776655  67777788888877


Q ss_pred             ccCCC
Q 039577          277 IRLNS  281 (282)
Q Consensus       277 n~~~~  281 (282)
                      |.+++
T Consensus       385 n~~~~  389 (466)
T 1o6v_A          385 QAWTN  389 (466)
T ss_dssp             EEEEC
T ss_pred             CcccC
Confidence            77665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=2.2e-24  Score=187.49  Aligned_cols=247  Identities=15%  Similarity=0.110  Sum_probs=137.9

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|++++|.+++ ++  ++.+++|++|++++|.+.+ ++  +.++++|++|++++|.+. .++   +..+++|++|
T Consensus        63 l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L  132 (457)
T 3bz5_A           63 LTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYL  132 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEE
Confidence            3577778888877765 33  6677777777777777764 32  667777777777777765 333   4566677777


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecC----------------------CCCCCCCCCccccCCCCCcEEEecCccccc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDG----------------------NNLQAGLLPSVIFNSSNIQVIILYGNHLSG  146 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~----------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  146 (282)
                      ++++|.+.+ ++  +..+++|++|++++                      |.++.  ++  +..+++|+.|++++|.++.
T Consensus       133 ~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          133 NCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             ECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCe
Confidence            776666653 22  44444444444444                      44422  22  3444555555555555543


Q ss_pred             cCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCC----------------------
Q 039577          147 HLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN----------------------  204 (282)
Q Consensus       147 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~----------------------  204 (282)
                      ..  ...+++|+.|++++|.++ .+|  +..+++|++|++++|.+++..+.....+..                      
T Consensus       206 ~~--l~~l~~L~~L~Ls~N~l~-~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          206 LD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF  280 (457)
T ss_dssp             CC--CTTCTTCSEEECCSSCCS-CCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred             ec--cccCCCCCEEECcCCccc-ccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence            31  114556666666666665 344  455666666666666665432221111100                      


Q ss_pred             cccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          205 SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       205 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      .+..++ +|+.|++++|...+.+|....++..+..-.+++|++|++++|.+++ ++  +..+++|+.+++++|+|++
T Consensus       281 ~~~~l~-~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          281 QAEGCR-KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             ECTTCT-TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred             cccccc-cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence            011122 4444444444443333332222222221124577888888888886 33  7788888888888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.2e-25  Score=186.79  Aligned_cols=239  Identities=15%  Similarity=0.125  Sum_probs=191.7

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      .+++..+++.+.+.......+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+..+   +..+++|++|+
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~   86 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLD   86 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEE
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEE
Confidence            356666777776654444455677899999999999987666788899999999999999974332   78899999999


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  168 (282)
                      +++|.+.+ ++    ..++|++|++++|.++.  .+  ...+++|+.|++++|.+....+..+ .+++|+.|++++|.++
T Consensus        87 Ls~n~l~~-l~----~~~~L~~L~l~~n~l~~--~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           87 LNNNYVQE-LL----VGPSIETLHAANNNISR--VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CCSSEEEE-EE----ECTTCCEEECCSSCCSE--EE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             CcCCcccc-cc----CCCCcCEEECCCCccCC--cC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            99999884 33    34899999999999843  22  2347889999999999987766556 7899999999999998


Q ss_pred             eeccchh-hCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577          169 GIVPDSI-CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG  247 (282)
Q Consensus       169 ~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~  247 (282)
                      +..+..+ ..+++|++|++++|.+++...        . ..++ +|++|++++|.+++ +|..+..+        ++|++
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~-~~l~-~L~~L~Ls~N~l~~-l~~~~~~l--------~~L~~  218 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQYNFIYDVKG--------Q-VVFA-KLKTLDLSSNKLAF-MGPEFQSA--------AGVTW  218 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEEEC--------C-CCCT-TCCEEECCSSCCCE-ECGGGGGG--------TTCSE
T ss_pred             cccHHHHhhccCcCCEEECCCCcCccccc--------c-cccc-cCCEEECCCCcCCc-chhhhccc--------CcccE
Confidence            6555555 468999999999999985421        1 1245 89999999999984 45555543        67899


Q ss_pred             eeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       248 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      |++++|.++ .+|..+..+++|+.+++++|.++
T Consensus       219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             EECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            999999999 67888999999999999999986

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=9.6e-26  Score=197.63  Aligned_cols=234  Identities=18%  Similarity=0.144  Sum_probs=137.6

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      +++++|++++|.+.+..|..|..+++|++|++++|.+.+..|  +..+++|+.|++++|.+. .++     ..++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcCEEE
Confidence            366677777776665555566666777777777766665433  566667777777776664 222     225666777


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc--CCCCccEEEeecCcc
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNL  167 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~  167 (282)
                      +++|.+.+..+   ..+++|+.|++++|.+ .+..|..+..+++|+.|++++|.+....+..+  .+++|+.|++++|.+
T Consensus       106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSC---SRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEE---CCCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCc---cccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            76666663222   1345667777766666 33334455566666667776666665444433  456666677666666


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG  247 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~  247 (282)
                      ++. +. ...+++|++|++++|.+++        +|+.+..++ +|+.|++++|.+++ +|..+..+        ++|+.
T Consensus       182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~--------~~~~~~~l~-~L~~L~Ls~N~l~~-lp~~l~~l--------~~L~~  241 (487)
T 3oja_A          182 YDV-KG-QVVFAKLKTLDLSSNKLAF--------MGPEFQSAA-GVTWISLRNNKLVL-IEKALRFS--------QNLEH  241 (487)
T ss_dssp             CEE-EC-CCCCTTCCEEECCSSCCCE--------ECGGGGGGT-TCSEEECTTSCCCE-ECTTCCCC--------TTCCE
T ss_pred             ccc-cc-cccCCCCCEEECCCCCCCC--------CCHhHcCCC-CccEEEecCCcCcc-cchhhccC--------CCCCE
Confidence            532 32 2245666667766666653        233344555 66667776666663 45444433        45666


Q ss_pred             eeccCCeee-eecchhhhccCCCceeecc
Q 039577          248 LLLGGDALE-GQIPTCLANLTSLISLNLR  275 (282)
Q Consensus       248 L~l~~n~~~-~~~~~~~~~l~~L~~l~l~  275 (282)
                      |++++|.+. +.+|.++..++.|+.++++
T Consensus       242 L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            666666665 4455566666666555553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=8.4e-24  Score=183.82  Aligned_cols=250  Identities=17%  Similarity=0.120  Sum_probs=163.0

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|++++|.+++ +| .+..+++|++|++++|.+.+ +|  +..+++|++|++++|.+.+ ++   +..+++|++|
T Consensus        41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L  111 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYL  111 (457)
T ss_dssp             HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEE
T ss_pred             cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEE
Confidence            4789999999999986 45 68999999999999999986 44  7899999999999999974 43   6789999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC  168 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (282)
                      ++++|.+.+ ++  +..+++|++|++++|.++.  ++  +..+++|++|++++|......+ ...+++|+.|++++|.++
T Consensus       112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~--l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE--ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC--CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCe-ec--CCCCCcCCEEECCCCccce--ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccc
Confidence            999999985 44  8899999999999999844  32  5566677777777664322221 114555666666666555


Q ss_pred             eeccchhhCCCCCcEEeccCcccceecCCC-------------CCCCCCcccccccccceEEeecccceecCCccccCCc
Q 039577          169 GIVPDSICNASEVTILELSKNLFSCLIPNT-------------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLS  235 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~  235 (282)
                       .+|  +..+++|++|++++|.+++..-..             ...+|  +..++ +|+.|++++|.+++..+..+.++.
T Consensus       184 -~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~-~L~~L~l~~N~l~~~~~~~l~~L~  257 (457)
T 3bz5_A          184 -ELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLT-QLTYFDCSVNPLTELDVSTLSKLT  257 (457)
T ss_dssp             -CCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCT-TCSEEECCSSCCSCCCCTTCTTCC
T ss_pred             -eec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccC-CCCEEEeeCCcCCCcCHHHCCCCC
Confidence             233  344444455544444443220000             01233  44555 788888888877754333333322


Q ss_pred             -------cCcccc--------------ccccceeeccCCeeeeecch--------hhhccCCCceeeccCccCCC
Q 039577          236 -------NMIKCN--------------LESLFGLLLGGDALEGQIPT--------CLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       236 -------~l~~l~--------------l~~l~~L~l~~n~~~~~~~~--------~~~~l~~L~~l~l~~n~~~~  281 (282)
                             +++.++              +++|+.|++++|...+.+|.        .+..+++|+++++++|+|++
T Consensus       258 ~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~  332 (457)
T 3bz5_A          258 TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE  332 (457)
T ss_dssp             EEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred             EEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence                   122222              24566666666655444442        23445667777777777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.7e-24  Score=188.44  Aligned_cols=217  Identities=16%  Similarity=0.127  Sum_probs=180.7

Q ss_pred             CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceE
Q 039577           32 NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE  111 (282)
Q Consensus        32 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  111 (282)
                      .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+   +..+++|++|++++|.+.+ ++    ..++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-LL----VGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEE-EE----ECTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCC-CC----CCCCcCE
Confidence            44599999999999987667789999999999999999975443   7889999999999999884 33    2389999


Q ss_pred             EEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhh-CCCCCcEEeccCc
Q 039577          112 LYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSIC-NASEVTILELSKN  189 (282)
Q Consensus       112 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~  189 (282)
                      |++++|.++.  .+  ...+++|+.|++++|.+....+..+ .+++|+.|++++|.+++..|..+. .+++|++|++++|
T Consensus       104 L~L~~N~l~~--~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISR--VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCC--EE--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECcCCcCCC--CC--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            9999999843  33  2356889999999999987776666 789999999999999977777765 6899999999999


Q ss_pred             ccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCC
Q 039577          190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSL  269 (282)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L  269 (282)
                      .+++..+         ...++ +|+.|++++|.+++ +|+.+..+        ++|+.|++++|.++ .+|..+..+++|
T Consensus       180 ~l~~~~~---------~~~l~-~L~~L~Ls~N~l~~-~~~~~~~l--------~~L~~L~Ls~N~l~-~lp~~l~~l~~L  239 (487)
T 3oja_A          180 FIYDVKG---------QVVFA-KLKTLDLSSNKLAF-MGPEFQSA--------AGVTWISLRNNKLV-LIEKALRFSQNL  239 (487)
T ss_dssp             CCCEEEC---------CCCCT-TCCEEECCSSCCCE-ECGGGGGG--------TTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred             ccccccc---------cccCC-CCCEEECCCCCCCC-CCHhHcCC--------CCccEEEecCCcCc-ccchhhccCCCC
Confidence            9986522         12355 89999999999985 45445543        67899999999999 478889999999


Q ss_pred             ceeeccCccCC
Q 039577          270 ISLNLRSIRLN  280 (282)
Q Consensus       270 ~~l~l~~n~~~  280 (282)
                      +.+++++|.+.
T Consensus       240 ~~L~l~~N~l~  250 (487)
T 3oja_A          240 EHFDLRGNGFH  250 (487)
T ss_dssp             CEEECTTCCBC
T ss_pred             CEEEcCCCCCc
Confidence            99999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.8e-23  Score=167.77  Aligned_cols=209  Identities=21%  Similarity=0.264  Sum_probs=168.6

Q ss_pred             CeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCC
Q 039577            2 GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD   81 (282)
Q Consensus         2 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~   81 (282)
                      |+.|++ .+..++++++++.++ .+|..+.  ++++.|++++|.+....+..+..+++|++|++++|.+. .++...+..
T Consensus         9 ~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~   83 (270)
T 2o6q_A            9 GGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKE   83 (270)
T ss_dssp             TCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSS
T ss_pred             CCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcC
Confidence            567776 456889999999887 4676554  68999999999998655567889999999999999997 777657789


Q ss_pred             CCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEE
Q 039577           82 CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENL  160 (282)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L  160 (282)
                      +++|++|++++|.+....+..+..+++|++|++++|.+ ....+..+..+++|++|++++|.+...++..+ .+++|+.|
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            99999999999998854445678899999999999998 33444567889999999999999887666655 78999999


Q ss_pred             EeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577          161 FLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS  224 (282)
Q Consensus       161 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~  224 (282)
                      ++++|.+++..+..+..+++|++|++++|.+++..+       ..+..++ +|+.|++++|.+.
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~-~L~~L~l~~N~~~  218 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-------GAFDSLE-KLKMLQLQENPWD  218 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCT-TCCEEECCSSCBC
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH-------HHhcccc-CCCEEEecCCCee
Confidence            999999884444457788999999999998874322       2345566 8999999999876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3.8e-23  Score=168.32  Aligned_cols=224  Identities=20%  Similarity=0.161  Sum_probs=167.9

Q ss_pred             EEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccC
Q 039577           14 ALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFN   93 (282)
Q Consensus        14 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~   93 (282)
                      .++..+..+. .+|..+.  ++|++|++++|.+....+..+.++++|+.|++++|.+. .++...+..+++|++|++++|
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence            3455555453 4666553  57999999999998766668889999999999999987 555547889999999999999


Q ss_pred             eecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc-CCCCc-CCCCccEEEeecCcceeec
Q 039577           94 KIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH-LRSSI-YLPNLENLFLWQNNLCGIV  171 (282)
Q Consensus        94 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~  171 (282)
                      .+....+..+..+++|++|++++|.++. ..+..+..+++|++|++++|.+... .+..+ .+++|+.|++++|.+++..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             ccCccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            9986666778899999999999998833 3333577889999999999988753 35555 7889999999999888555


Q ss_pred             cchhhCCCCCc----EEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577          172 PDSICNASEVT----ILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG  247 (282)
Q Consensus       172 ~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~  247 (282)
                      +..+..+.+++    +|++++|.+++..+        ...... +|++|++++|.+++..+..+..+        ++|++
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~--------~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~  228 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQP--------GAFKEI-RLKELALDTNQLKSVPDGIFDRL--------TSLQK  228 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECT--------TSSCSC-CEEEEECCSSCCSCCCTTTTTTC--------CSCCE
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCc--------cccCCC-cccEEECCCCceeecCHhHhccc--------ccccE
Confidence            55555555555    88889988874433        222333 78999999988874433344443        56788


Q ss_pred             eeccCCeeeeec
Q 039577          248 LLLGGDALEGQI  259 (282)
Q Consensus       248 L~l~~n~~~~~~  259 (282)
                      |++++|.+.+.-
T Consensus       229 L~l~~N~~~c~c  240 (276)
T 2z62_A          229 IWLHTNPWDCSC  240 (276)
T ss_dssp             EECCSSCBCCCT
T ss_pred             EEccCCcccccC
Confidence            888888887554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=7.2e-23  Score=177.81  Aligned_cols=244  Identities=24%  Similarity=0.303  Sum_probs=107.1

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF   90 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   90 (282)
                      ++++|++++|.+++ +| .++.+++|++|++++|.+.+ +|..   ..+|++|++++|.+. .+|  .+..+++|++|++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~--~~~~l~~L~~L~l  202 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELP--ELQNLPFLTAIYA  202 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCc--cccCCCCCCEEEC
Confidence            44444444444432 33 24444444444444444432 2221   124444444444443 233  2344444555555


Q ss_pred             ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceee
Q 039577           91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI  170 (282)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  170 (282)
                      .+|.+.+ +|..   .++|++|++++|.++  .+|. +..+++|++|++++|.+...+ ..  +++|+.|++++|.++ .
T Consensus       203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~l~~l~-~~--~~~L~~L~l~~N~l~-~  271 (454)
T 1jl5_A          203 DNNSLKK-LPDL---PLSLESIVAGNNILE--ELPE-LQNLPFLTTIYADNNLLKTLP-DL--PPSLEALNVRDNYLT-D  271 (454)
T ss_dssp             CSSCCSS-CCCC---CTTCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSCCSSCC-SC--CTTCCEEECCSSCCS-C
T ss_pred             CCCcCCc-CCCC---cCcccEEECcCCcCC--cccc-cCCCCCCCEEECCCCcCCccc-cc--ccccCEEECCCCccc-c
Confidence            4444442 2221   134455555555442  2332 445555666666655554321 11  345555555555554 2


Q ss_pred             ccchhhCCCCCcEEeccCccccee--cCCCCCCC------CCcccccccccceEEeecccceecCCccccCCccCcccc-
Q 039577          171 VPDSICNASEVTILELSKNLFSCL--IPNTSGVF------PNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN-  241 (282)
Q Consensus       171 ~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l------~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~-  241 (282)
                      +|..   +++|++|++++|.+++.  .|..+..+      ...+...+.+|++|++++|.+++ +|..+   ++|+.|+ 
T Consensus       272 l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~~---~~L~~L~L  344 (454)
T 1jl5_A          272 LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---PRLERLIA  344 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCCC---TTCCEEEC
T ss_pred             cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccccC---CcCCEEEC
Confidence            3322   24556666666655541  11110000      00111222367777777776663 44432   3333333 


Q ss_pred             -----------ccccceeeccCCeeee--ecchhhhcc-------------CCCceeeccCccCCC
Q 039577          242 -----------LESLFGLLLGGDALEG--QIPTCLANL-------------TSLISLNLRSIRLNS  281 (282)
Q Consensus       242 -----------l~~l~~L~l~~n~~~~--~~~~~~~~l-------------~~L~~l~l~~n~~~~  281 (282)
                                 +++|++|++++|.+++  .+|.++..+             ++|+.+++++|.+++
T Consensus       345 ~~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          345 SFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             CCCccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence                       3578888888888887  677777776             778888888888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=4.6e-23  Score=184.66  Aligned_cols=229  Identities=24%  Similarity=0.310  Sum_probs=140.7

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      ..++.|+++++.++ .+|..+.  ++|++|++++|.+. .+|.   .+++|+.|++++|.+. .+|.    .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            35777788777775 5666554  67777777777776 4554   4677777777777775 5554    456777777


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-----------------
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-----------------  152 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------  152 (282)
                      +++|.+.. +|.   .+++|++|++++|.++.  +|..   +++|++|++++|.+...+ ...                 
T Consensus       108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~--lp~~---l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS--LPVL---PPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             ECSCCCCC-CCC---CCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCC
T ss_pred             CcCCcCCC-CCC---CCCCcCEEECCCCCCCc--CCCC---CCCCCEEECcCCcCCCcC-CccCCCCEEECCCCCCCCCc
Confidence            77777663 443   34566666666666533  4432   355666666666554322 110                 


Q ss_pred             -CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccc
Q 039577          153 -YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGF  231 (282)
Q Consensus       153 -~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  231 (282)
                       .+++|+.|++++|.++ .+|..   +++|+.|++++|.++        .+|..   .+ +|+.|++++|.++ .+|.  
T Consensus       178 ~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~--------~l~~~---~~-~L~~L~Ls~N~L~-~lp~--  238 (622)
T 3g06_A          178 MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT--------SLPAL---PS-GLKELIVSGNRLT-SLPV--  238 (622)
T ss_dssp             CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS--------SCCCC---CT-TCCEEECCSSCCS-CCCC--
T ss_pred             ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCccc--------ccCCC---CC-CCCEEEccCCccC-cCCC--
Confidence             1244444444444444 23321   234444444444333        12211   12 6777777777776 3442  


Q ss_pred             cCCccCcccc------------ccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          232 GNLSNMIKCN------------LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       232 ~~l~~l~~l~------------l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                       .+++|+.|+            +++|+.|++++|.++ .+|..+..+++|+.+++++|.+++
T Consensus       239 -~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          239 -LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             -CCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence             234444444            357999999999999 889999999999999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3e-23  Score=168.92  Aligned_cols=209  Identities=18%  Similarity=0.122  Sum_probs=171.8

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence            567999999999998766668999999999999999998766778889999999999999997 4454478999999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCcc----EEEee
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLE----NLFLW  163 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~----~L~l~  163 (282)
                      ++.+|.+....+..+..+++|++|++++|.++...+|..+..+++|++|++++|.+....+..+ .+.+|+    .++++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            9999998865455788999999999999998544568889999999999999999987666555 444455    89999


Q ss_pred             cCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecC
Q 039577          164 QNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI  227 (282)
Q Consensus       164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~  227 (282)
                      +|.+. .++.......+|++|++++|.+++..+       ..+..++ +|++|++++|.+.+.-
T Consensus       186 ~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~~~~~l~-~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          186 LNPMN-FIQPGAFKEIRLKELALDTNQLKSVPD-------GIFDRLT-SLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             SSCCC-EECTTSSCSCCEEEEECCSSCCSCCCT-------TTTTTCC-SCCEEECCSSCBCCCT
T ss_pred             CCccc-ccCccccCCCcccEEECCCCceeecCH-------hHhcccc-cccEEEccCCcccccC
Confidence            99998 555444455689999999999884322       2345666 9999999999987443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=3.5e-25  Score=183.55  Aligned_cols=224  Identities=22%  Similarity=0.166  Sum_probs=176.0

Q ss_pred             ceEEEEcCCCccc-cCCCcccc-------CCCCccEEEecCCcceeeCCccc--cCCCCCcEEEcCCCcccccCCCCccC
Q 039577           11 RVTALSLPNLTLG-GTIPPHIG-------NLSFLVSLTSVAKSFYGTLPNEL--WQLQRLRIVDLSSGIIPGSLPDDTSG   80 (282)
Q Consensus        11 ~l~~l~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~   80 (282)
                      .+++|++++|.+. ..++..+.       ++++|++|++++|.+.+.+|..+  ..+++|+.|++++|.+.+. |. .+.
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~-~~~  141 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DA-WLA  141 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SS-HHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hH-HHH
Confidence            3778899998884 45666555       78999999999999998888876  7899999999999999744 54 566


Q ss_pred             CC-----CCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCC-CCCccc--cCCCCCcEEEecCccccccC--C-
Q 039577           81 DC-----IMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAG-LLPSVI--FNSSNIQVIILYGNHLSGHL--R-  149 (282)
Q Consensus        81 ~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~~~--~-  149 (282)
                      .+     ++|++|++++|.+.+..+..+..+++|++|++++|.+... ..+..+  ..+++|++|++++|.+....  + 
T Consensus       142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence            65     8999999999999976668899999999999999986221 012233  67899999999999887321  1 


Q ss_pred             CCc-CCCCccEEEeecCcceeecc-chhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecC
Q 039577          150 SSI-YLPNLENLFLWQNNLCGIVP-DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI  227 (282)
Q Consensus       150 ~~~-~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~  227 (282)
                      ..+ .+++|+.|++++|.+++..| ..+..+++|++|++++|.++        .+|..+.  + +|++|++++|.+++. 
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--------~ip~~~~--~-~L~~L~Ls~N~l~~~-  289 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--------QVPKGLP--A-KLSVLDLSYNRLDRN-  289 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--------SCCSSCC--S-EEEEEECCSSCCCSC-
T ss_pred             HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--------hhhhhcc--C-CceEEECCCCCCCCC-
Confidence            222 57899999999999985553 34456789999999999987        3444444  4 899999999999844 


Q ss_pred             CccccCCccCccccccccceeeccCCeeee
Q 039577          228 PVGFGNLSNMIKCNLESLFGLLLGGDALEG  257 (282)
Q Consensus       228 ~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~  257 (282)
                      |. +..+        ++|++|++++|.+++
T Consensus       290 p~-~~~l--------~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          290 PS-PDEL--------PQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CC-TTTS--------CEEEEEECTTCTTTC
T ss_pred             hh-HhhC--------CCCCEEeccCCCCCC
Confidence            55 5554        678999999998875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=1.8e-22  Score=182.28  Aligned_cols=151  Identities=19%  Similarity=0.162  Sum_probs=121.8

Q ss_pred             EEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccC
Q 039577           14 ALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFN   93 (282)
Q Consensus        14 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~   93 (282)
                      +.+-++-+++ .+|..+.  +++++|+|++|.++...+..|.++++|++|++++|.+. .++.+.|..+++|++|++++|
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence            3455555554 5776553  58999999999998766678999999999999999997 677668999999999999999


Q ss_pred             eecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccC-CCCc-CCCCccEEEeecCccee
Q 039577           94 KIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHL-RSSI-YLPNLENLFLWQNNLCG  169 (282)
Q Consensus        94 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~  169 (282)
                      ++....+..|..+++|++|++++|.++. ..+..+.++++|++|++++|.+.... +..+ .+++|++|++++|.+++
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            9985444568999999999999999843 33446889999999999999987543 3444 78999999999887653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1e-23  Score=183.09  Aligned_cols=231  Identities=24%  Similarity=0.252  Sum_probs=114.5

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCC-------------cEEEcCCCcccccCC
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRL-------------RIVDLSSGIIPGSLP   75 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~~~   75 (282)
                      ..++++|++++|.+ +++|.+++++++|++|++++|.+.+.+|..++++++|             +.|++++|.++ .+|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence            57899999999999 8899999999999999999999988889888877654             88888888775 444


Q ss_pred             CCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCC------------------CCCCccccCCCCCcEE
Q 039577           76 DDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA------------------GLLPSVIFNSSNIQVI  137 (282)
Q Consensus        76 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------~~~~~~~~~~~~L~~L  137 (282)
                      .    ..++|++|++++|.+.+ +|..   .++|++|++++|.++.                  ..+| .+..+++|++|
T Consensus        88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L  158 (454)
T 1jl5_A           88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKII  158 (454)
T ss_dssp             S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred             C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence            4    13567777777766664 4432   2445555555544421                  0133 24444444555


Q ss_pred             EecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEE
Q 039577          138 ILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFY  217 (282)
Q Consensus       138 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~  217 (282)
                      ++++|.+... +..  ..+|+.|++++|.++ .+| .+..+++|++|++++|.+++        +|..    +.+|++|+
T Consensus       159 ~l~~N~l~~l-p~~--~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~--------l~~~----~~~L~~L~  221 (454)
T 1jl5_A          159 DVDNNSLKKL-PDL--PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK--------LPDL----PLSLESIV  221 (454)
T ss_dssp             ECCSSCCSCC-CCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS--------CCCC----CTTCCEEE
T ss_pred             ECCCCcCccc-CCC--cccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCc--------CCCC----cCcccEEE
Confidence            5544444321 111  234445555555444 233 24444555555555554442        1111    12555566


Q ss_pred             eecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          218 ASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       218 l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      +++|.+. .+|. +..        +++|+.|++++|.+++ +|..   +++|+.+++++|++++
T Consensus       222 l~~n~l~-~lp~-~~~--------l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          222 AGNNILE-ELPE-LQN--------LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CCSSCCS-SCCC-CTT--------CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred             CcCCcCC-cccc-cCC--------CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence            6655554 4442 332        3567777777887773 4432   2566666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=9.9e-23  Score=165.50  Aligned_cols=204  Identities=20%  Similarity=0.224  Sum_probs=106.1

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      +++++|+++++.+.. + ..+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEE
Confidence            455566666655432 2 234555666666666665543 2 24555566666666666554 33332455556666666


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  168 (282)
                      +++|.+.+..+..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.++...+..+ .+++|+.|++++|.++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            6666555333333455566666666666552 2222334455556666666665554444333 4555666666665555


Q ss_pred             eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCC
Q 039577          169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNL  234 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  234 (282)
                      +..+..+..+++|++|++++|.+.+.              ++ .++.++++.|.++|.+|.+++.+
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~--------------~~-~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCT--------------CP-GIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC--------------TT-TTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcccc--------------Cc-HHHHHHHHHHhCCCcccCccccc
Confidence            33333345555566666655554421              11 45555555555555555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.89  E-value=2.5e-26  Score=200.34  Aligned_cols=267  Identities=16%  Similarity=0.161  Sum_probs=154.4

Q ss_pred             ceEEEEcCCCcccc----CCCccccCCCCccEEEecCCcceeeCCccc-----cCCCCCcEEEcCCCcccccC----CCC
Q 039577           11 RVTALSLPNLTLGG----TIPPHIGNLSFLVSLTSVAKSFYGTLPNEL-----WQLQRLRIVDLSSGIIPGSL----PDD   77 (282)
Q Consensus        11 ~l~~l~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~----~~~   77 (282)
                      ++++|++++|.+..    .++..+..+++|++|++++|.+....+..+     ...++|+.|++++|.+.+..    +. 
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-
Confidence            45555555555542    234455555555555555555542211111     11345555555555554211    11 


Q ss_pred             ccCCCCCccEEEcccCeecccCCcCCc-----CCCCceEEEecCCCCCCCC---CCccccCCCCCcEEEecCccccccCC
Q 039577           78 TSGDCIMLRRLSFSFNKIRGWIPQKIG-----NLTELVELYLDGNNLQAGL---LPSVIFNSSNIQVIILYGNHLSGHLR  149 (282)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~  149 (282)
                      .+..+++|++|++++|.+....+..+.     ..++|++|++++|.++...   ++..+...++|++|++++|.+.....
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            234456677777776665532222221     2457777777777663211   24445566778888888877653221


Q ss_pred             -----CCc-CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEee
Q 039577          150 -----SSI-YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYAS  219 (282)
Q Consensus       150 -----~~~-~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~  219 (282)
                           ... .+++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+.   .+...+.....+|++|+++
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~---~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR---LLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH---HHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH---HHHHHhccCCccceeeEcC
Confidence                 111 367788888888877632    455666677888888888877543211   1111111111266777777


Q ss_pred             cccceec----CCccccCCccCcccc---------------------ccccceeeccCCeeee----ecchhhhccCCCc
Q 039577          220 SCQLSGG----IPVGFGNLSNMIKCN---------------------LESLFGLLLGGDALEG----QIPTCLANLTSLI  270 (282)
Q Consensus       220 ~n~~~~~----~~~~~~~l~~l~~l~---------------------l~~l~~L~l~~n~~~~----~~~~~~~~l~~L~  270 (282)
                      +|.+++.    ++..+..+++|+.|+                     .++|++|++++|.+++    .++..+..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            7666533    234444555565555                     2489999999999986    6778888899999


Q ss_pred             eeeccCccCCC
Q 039577          271 SLNLRSIRLNS  281 (282)
Q Consensus       271 ~l~l~~n~~~~  281 (282)
                      ++++++|+|++
T Consensus       402 ~L~l~~N~i~~  412 (461)
T 1z7x_W          402 ELDLSNNCLGD  412 (461)
T ss_dssp             EEECCSSSCCH
T ss_pred             EEECCCCCCCH
Confidence            99999999874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.2e-21  Score=157.37  Aligned_cols=203  Identities=22%  Similarity=0.208  Sum_probs=157.1

Q ss_pred             CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEe
Q 039577           35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL  114 (282)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  114 (282)
                      ..++++++++.++ .+|..+.  ++++.|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            5788999998887 4776553  68999999999987 666557889999999999999988433344678999999999


Q ss_pred             cCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccce
Q 039577          115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC  193 (282)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  193 (282)
                      ++|.++ ...+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus        93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            999984 3334456788999999999999987776666 78999999999999874334447788999999999998874


Q ss_pred             ecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeee
Q 039577          194 LIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ  258 (282)
Q Consensus       194 ~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~  258 (282)
                      ..+       ..+..++ +|++|++++|.+++..+..+..+        ++|+.|++++|.+...
T Consensus       172 ~~~-------~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          172 VPE-------GAFDKLT-ELKTLKLDNNQLKRVPEGAFDSL--------EKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCT-------TTTTTCT-TCCEEECCSSCCSCCCTTTTTTC--------TTCCEEECCSSCBCCS
T ss_pred             eCh-------hHhccCC-CcCEEECCCCcCCcCCHHHhccc--------cCCCEEEecCCCeeCC
Confidence            322       2355566 89999999998884444345443        6788888888887643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2e-21  Score=159.15  Aligned_cols=198  Identities=21%  Similarity=0.209  Sum_probs=166.6

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++++++++.++ .+|..+.  ++++.|++++|.+....+..+..+++|+.|++++|.+. .++.  ...+++|++|
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTL   82 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEE
T ss_pred             cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC--CCCCCcCCEE
Confidence            578999999999886 5676554  78999999999998777788899999999999999987 4554  2688999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      ++++|.+. .+|..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+...++..+ .+++|+.|++++|.+
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            99999998 67888889999999999999984 3344668889999999999999987766666 789999999999999


Q ss_pred             eeeccc-hhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577          168 CGIVPD-SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS  224 (282)
Q Consensus       168 ~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~  224 (282)
                      + .+|. .+..+++|++|++++|.++        .+|..+...+ .|+.+++++|.+.
T Consensus       161 ~-~l~~~~~~~l~~L~~L~L~~N~l~--------~ip~~~~~~~-~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 T-ELPAGLLNGLENLDTLLLQENSLY--------TIPKGFFGSH-LLPFAFLHGNPWL  208 (290)
T ss_dssp             S-CCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred             C-ccCHHHhcCcCCCCEEECCCCcCC--------ccChhhcccc-cCCeEEeCCCCcc
Confidence            8 5554 4577899999999999987        4555666666 8999999998875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=4.9e-22  Score=161.40  Aligned_cols=224  Identities=17%  Similarity=0.152  Sum_probs=174.5

Q ss_pred             EEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe
Q 039577           15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK   94 (282)
Q Consensus        15 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~   94 (282)
                      +++..+.+...  ..+..+++|+.|++.++.+.. + +.+..+++|+.|++++|.+. .++  .+..+++|++|++++|.
T Consensus        24 l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           24 ANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSC
T ss_pred             HHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCc
Confidence            34444444332  234567899999999998763 3 35788999999999999986 343  57889999999999999


Q ss_pred             ecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccc
Q 039577           95 IRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPD  173 (282)
Q Consensus        95 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~  173 (282)
                      +.+..+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+++..+.
T Consensus        97 l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           97 LQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            98655556788999999999999984 3444457888999999999999987766665 789999999999999855455


Q ss_pred             hhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCC
Q 039577          174 SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGD  253 (282)
Q Consensus       174 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n  253 (282)
                      .+..+++|++|++++|.+++..+       ..+..++ +|+.|++++|.+.+..               ++++.|+++.|
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~-~L~~L~l~~N~~~~~~---------------~~l~~l~~~~n  232 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPD-------GVFDRLT-SLQYIWLHDNPWDCTC---------------PGIRYLSEWIN  232 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCT-------TTTTTCT-TCCEEECCSSCBCCCT---------------TTTHHHHHHHH
T ss_pred             HhcCCccCCEEECCCCcCCccCH-------HHHhCCc-CCCEEEccCCCccccC---------------cHHHHHHHHHH
Confidence            56788999999999999884433       2455666 9999999999876332               45777888889


Q ss_pred             eeeeecchhhhccCCC
Q 039577          254 ALEGQIPTCLANLTSL  269 (282)
Q Consensus       254 ~~~~~~~~~~~~l~~L  269 (282)
                      .++|.+|.+++.++..
T Consensus       233 ~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          233 KHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             HTGGGBBCTTSCBCGG
T ss_pred             hCCCcccCcccccCCC
Confidence            9999999888876543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=5.4e-25  Score=186.10  Aligned_cols=204  Identities=17%  Similarity=0.115  Sum_probs=86.6

Q ss_pred             EcCCCccccCCCccccCCCCccEEEecCCcceeeCC----ccccCCC-CCcEEEcCCCcccccCCCCccCCC-----CCc
Q 039577           16 SLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLP----NELWQLQ-RLRIVDLSSGIIPGSLPDDTSGDC-----IML   85 (282)
Q Consensus        16 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L   85 (282)
                      +++.+.+++.+|..+...++|++|++++|.+....+    ..+..++ +|+.|++++|.+.+..+. .+..+     ++|
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCc
Confidence            444555554444444444445555555555543222    3334444 555555555555422221 22221     555


Q ss_pred             cEEEcccCeecccCCcC----CcCC-CCceEEEecCCCCCCCCCCcc----ccC-CCCCcEEEecCccccccCCCCc---
Q 039577           86 RRLSFSFNKIRGWIPQK----IGNL-TELVELYLDGNNLQAGLLPSV----IFN-SSNIQVIILYGNHLSGHLRSSI---  152 (282)
Q Consensus        86 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~~~---  152 (282)
                      ++|++++|.+.+..+..    +..+ ++|++|++++|.++. ..+..    +.. ..+|++|++++|.+.......+   
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            55555555554322221    2222 455555555555421 11111    111 2355555555555542221111   


Q ss_pred             --CC-CCccEEEeecCcceeeccc----hhhCC-CCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577          153 --YL-PNLENLFLWQNNLCGIVPD----SICNA-SEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS  224 (282)
Q Consensus       153 --~~-~~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~  224 (282)
                        .. ++|++|++++|.+++..+.    .+... ++|++|++++|.+++...   ..++..+...+.+|++|++++|.++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY---AELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH---HHHHHHHhcCCCCceEEECcCCCCC
Confidence              12 2555555555555422222    22223 355555555555543111   1223333332225555555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=4.4e-21  Score=157.09  Aligned_cols=201  Identities=21%  Similarity=0.271  Sum_probs=161.0

Q ss_pred             ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577           30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL  109 (282)
Q Consensus        30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  109 (282)
                      +.+++++++++++++.+. .+|..+.  ++++.|++++|.+. .++...+..+++|++|++++|.+.. ++.. ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcC
Confidence            567889999999998887 5776554  78999999999997 4443378899999999999999884 3433 688999


Q ss_pred             eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577          110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK  188 (282)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  188 (282)
                      ++|++++|.++.  +|..+..+++|++|++++|.++..++..+ .+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus        80 ~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           80 GTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            999999999854  77778888999999999999987766666 789999999999998844444567888999999999


Q ss_pred             cccceecCCCCCCCCC-cccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeee
Q 039577          189 NLFSCLIPNTSGVFPN-SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALE  256 (282)
Q Consensus       189 ~~~~~~~~~~~~~l~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~  256 (282)
                      |.++.        +|. .+..++ +|+.|++++|.++ .+|..+..+        .+|+.+++++|.+.
T Consensus       158 N~l~~--------l~~~~~~~l~-~L~~L~L~~N~l~-~ip~~~~~~--------~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          158 NNLTE--------LPAGLLNGLE-NLDTLLLQENSLY-TIPKGFFGS--------HLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCSC--------CCTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTT--------CCCSEEECCSCCBC
T ss_pred             CcCCc--------cCHHHhcCcC-CCCEEECCCCcCC-ccChhhccc--------ccCCeEEeCCCCcc
Confidence            98873        332 344566 8999999999998 677766554        46788888888776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=6.1e-24  Score=177.77  Aligned_cols=250  Identities=19%  Similarity=0.218  Sum_probs=178.9

Q ss_pred             CCceEEEEcCCCccccCCCccccCC--CCccEEEecCCcceeeCCccccCCCCCcEEEcCCCccccc-CCCCccCCCCCc
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNL--SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGS-LPDDTSGDCIML   85 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L   85 (282)
                      +..+++++++++.+.   +..+..+  ++++.+++.+|.+.+..+. +..+++|+.|++++|.+.+. ++. .+..+++|
T Consensus        46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L  120 (336)
T 2ast_B           46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKL  120 (336)
T ss_dssp             STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCC
T ss_pred             chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCC
Confidence            345888999988765   3445555  7899999999988765554 66889999999999987644 454 67788999


Q ss_pred             cEEEcccCeecccCCcCCcCCCCceEEEecCC-CCCCCCCCccccCCCCCcEEEecCc-ccccc-CCCCc-CCC-CccEE
Q 039577           86 RRLSFSFNKIRGWIPQKIGNLTELVELYLDGN-NLQAGLLPSVIFNSSNIQVIILYGN-HLSGH-LRSSI-YLP-NLENL  160 (282)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~-~~~-~L~~L  160 (282)
                      ++|++++|.+.+..+..+..+++|++|++++| .++...++..+..+++|++|++++| .++.. .+..+ .++ +|++|
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            99999999887666677778899999999998 4532234555777899999999998 76643 22323 677 99999


Q ss_pred             EeecCc--ce-eeccchhhCCCCCcEEeccCcc-cceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCcc
Q 039577          161 FLWQNN--LC-GIVPDSICNASEVTILELSKNL-FSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSN  236 (282)
Q Consensus       161 ~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  236 (282)
                      ++++|.  ++ +.++..+..+++|++|++++|. +++.       .+..+..++ +|++|++++|.  ...+..+..+.+
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~l~~  270 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-------CFQEFFQLN-YLQHLSLSRCY--DIIPETLLELGE  270 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-------GGGGGGGCT-TCCEEECTTCT--TCCGGGGGGGGG
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH-------HHHHHhCCC-CCCEeeCCCCC--CCCHHHHHHHhc
Confidence            999984  44 3566677788999999999997 5533       233566676 99999999985  122333222222


Q ss_pred             CccccccccceeeccCCeeeeecchhhhcc-CCCceeeccCccCCCC
Q 039577          237 MIKCNLESLFGLLLGGDALEGQIPTCLANL-TSLISLNLRSIRLNST  282 (282)
Q Consensus       237 l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l-~~L~~l~l~~n~~~~~  282 (282)
                           +++|+.|++++| +++.   .+..+ .++..|++++|.+++.
T Consensus       271 -----~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          271 -----IPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             -----CTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCT
T ss_pred             -----CCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccc
Confidence                 367888888888 5432   33333 2466777888888763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=3.4e-21  Score=153.43  Aligned_cols=203  Identities=15%  Similarity=0.192  Sum_probs=154.4

Q ss_pred             cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc-ccccCCCCccCCCCCccEEEccc-CeecccCCc
Q 039577           24 GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI-IPGSLPDDTSGDCIMLRRLSFSF-NKIRGWIPQ  101 (282)
Q Consensus        24 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~  101 (282)
                      ..+|. +.  ++|++|++++|.+....+..+..+++|+.|++++|. +. .++...+..+++|++|++++ |.+....+.
T Consensus        24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            35665 43  489999999999886656678889999999999996 75 66655788899999999998 888854456


Q ss_pred             CCcCCCCceEEEecCCCCCCCCCCccccCCCCCc---EEEecCc-cccccCCCCc-CCCCcc-EEEeecCcceeeccchh
Q 039577          102 KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQ---VIILYGN-HLSGHLRSSI-YLPNLE-NLFLWQNNLCGIVPDSI  175 (282)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~-~~~~L~-~L~l~~~~~~~~~~~~l  175 (282)
                      .+..+++|++|++++|.++.  +|. +..+.+|+   .|++++| .+....+..+ .+++|+ .+++++|.++ .+|...
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~  175 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA  175 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred             HhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence            67889999999999998844  665 67777777   9999999 8876666656 788999 9999999987 666554


Q ss_pred             hCCCCCcEEeccCcc-cceecCCCCCCCCCccccc-ccccceEEeecccceecCCccccCCccCccccccccceeeccCC
Q 039577          176 CNASEVTILELSKNL-FSCLIPNTSGVFPNSIGNL-STSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGD  253 (282)
Q Consensus       176 ~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n  253 (282)
                      ...++|++|++++|. +++..+.       .+..+ + +|++|++++|.++ .+|..  .+        ++|+.|+++++
T Consensus       176 ~~~~~L~~L~L~~n~~l~~i~~~-------~~~~l~~-~L~~L~l~~N~l~-~l~~~--~~--------~~L~~L~l~~~  236 (239)
T 2xwt_C          176 FNGTKLDAVYLNKNKYLTVIDKD-------AFGGVYS-GPSLLDVSQTSVT-ALPSK--GL--------EHLKELIARNT  236 (239)
T ss_dssp             TTTCEEEEEECTTCTTCCEECTT-------TTTTCSB-CCSEEECTTCCCC-CCCCT--TC--------TTCSEEECTTC
T ss_pred             cCCCCCCEEEcCCCCCcccCCHH-------Hhhcccc-CCcEEECCCCccc-cCChh--Hh--------ccCceeeccCc
Confidence            444789999999995 7744332       34455 5 8999999999987 55543  22        55666766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=3.1e-24  Score=183.00  Aligned_cols=247  Identities=18%  Similarity=0.235  Sum_probs=167.7

Q ss_pred             CCCccccCCCCccEEEecCCcceee----CCccccCCCCCcEEEcCCCcc---cccCCCC------ccCCCCCccEEEcc
Q 039577           25 TIPPHIGNLSFLVSLTSVAKSFYGT----LPNELWQLQRLRIVDLSSGII---PGSLPDD------TSGDCIMLRRLSFS   91 (282)
Q Consensus        25 ~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~---~~~~~~~------~~~~l~~L~~L~l~   91 (282)
                      .++..+..+++|+.|++++|.+...    ++..+..+++|+.|++++|.+   .+.+|..      .+..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3556667788888888888887654    333466788888888888643   2333331      13577888888888


Q ss_pred             cCeecc----cCCcCCcCCCCceEEEecCCCCCCC---CCCccccCC---------CCCcEEEecCcccccc-CC---CC
Q 039577           92 FNKIRG----WIPQKIGNLTELVELYLDGNNLQAG---LLPSVIFNS---------SNIQVIILYGNHLSGH-LR---SS  151 (282)
Q Consensus        92 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~---------~~L~~L~l~~~~~~~~-~~---~~  151 (282)
                      +|.+..    .++..+..+++|++|++++|.++..   .++..+..+         ++|++|++++|.+... .+   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            888775    2455667788888998888876210   112222233         7888898888887622 22   12


Q ss_pred             c-CCCCccEEEeecCccee-----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccccee
Q 039577          152 I-YLPNLENLFLWQNNLCG-----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG  225 (282)
Q Consensus       152 ~-~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~  225 (282)
                      + .+++|+.|++++|.+..     ..+..+..+++|++|++++|.+++..   ...+|..+..++ +|++|++++|.+++
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~-~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWP-NLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCT-TCCEEECTTCCCCH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCC-CcCEEECCCCCCch
Confidence            2 57788999999888762     22336677888999999998875221   113455666777 89999999988874


Q ss_pred             c----CCccccCCccCccccccccceeeccCCeeee----ecchhh-hccCCCceeeccCccCCC
Q 039577          226 G----IPVGFGNLSNMIKCNLESLFGLLLGGDALEG----QIPTCL-ANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       226 ~----~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~----~~~~~~-~~l~~L~~l~l~~n~~~~  281 (282)
                      .    ++..+..      ..+++|++|++++|.+++    .+|..+ .++++|+.|++++|+|++
T Consensus       259 ~~~~~l~~~l~~------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          259 RGAAAVVDAFSK------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHHHHHT------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhHHHHHHHHhh------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            4    2333311      012678888999999887    377766 567999999999998876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.87  E-value=5.1e-25  Score=192.02  Aligned_cols=266  Identities=17%  Similarity=0.139  Sum_probs=144.1

Q ss_pred             ceEEEEcCCCcccc----CCCccccCCCCccEEEecCCcceeeCCcccc-CCC----CCcEEEcCCCcccc----cCCCC
Q 039577           11 RVTALSLPNLTLGG----TIPPHIGNLSFLVSLTSVAKSFYGTLPNELW-QLQ----RLRIVDLSSGIIPG----SLPDD   77 (282)
Q Consensus        11 ~l~~l~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~----~L~~L~l~~~~~~~----~~~~~   77 (282)
                      ++++|++++|.+..    .++..+..+++|++|++++|.+....+..+. .++    +|++|++++|.+.+    .++. 
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-  107 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-  107 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH-
Confidence            44555555554432    2233344445555555555544332111111 122    45555555555432    1122 


Q ss_pred             ccCCCCCccEEEcccCeecccCCcC-----CcCCCCceEEEecCCCCCCCC---CCccccCCCCCcEEEecCccccccCC
Q 039577           78 TSGDCIMLRRLSFSFNKIRGWIPQK-----IGNLTELVELYLDGNNLQAGL---LPSVIFNSSNIQVIILYGNHLSGHLR  149 (282)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~  149 (282)
                      .+..+++|++|++++|.+....+..     ....++|++|++++|.++...   ++..+...++|++|++++|.+.....
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence            3445555555555555544211111     112345666666555542110   12233445666777776666543322


Q ss_pred             CCc------CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcc-cccccccceEEe
Q 039577          150 SSI------YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSI-GNLSTSLENFYA  218 (282)
Q Consensus       150 ~~~------~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~~~~~~L~~L~l  218 (282)
                      ..+      ..++|++|++++|.++..    ++..+..+++|++|++++|.+.+....   .+...+ ..++ +|++|++
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~---~l~~~~~~~~~-~L~~L~L  263 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA---ELCPGLLHPSS-RLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH---HHHHHHTSTTC-CCCEEEC
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH---HHHHHHhcCCC-CceEEEC
Confidence            211      144677777777766531    455566677788888887776642110   111111 1344 7888888


Q ss_pred             ecccceec----CCccccCCccCccccc---------------------cccceeeccCCeeeee----cchhhhccCCC
Q 039577          219 SSCQLSGG----IPVGFGNLSNMIKCNL---------------------ESLFGLLLGGDALEGQ----IPTCLANLTSL  269 (282)
Q Consensus       219 ~~n~~~~~----~~~~~~~l~~l~~l~l---------------------~~l~~L~l~~n~~~~~----~~~~~~~l~~L  269 (282)
                      ++|.+++.    ++..+..+++|+.|++                     ++|++|++++|.+++.    ++..+..+++|
T Consensus       264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  343 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence            88887743    4555666777777761                     4888899998888865    45667778999


Q ss_pred             ceeeccCccCCC
Q 039577          270 ISLNLRSIRLNS  281 (282)
Q Consensus       270 ~~l~l~~n~~~~  281 (282)
                      +++++++|.|++
T Consensus       344 ~~L~Ls~n~i~~  355 (461)
T 1z7x_W          344 LELQISNNRLED  355 (461)
T ss_dssp             CEEECCSSBCHH
T ss_pred             cEEEccCCcccc
Confidence            999999998763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=161.87  Aligned_cols=227  Identities=17%  Similarity=0.109  Sum_probs=171.6

Q ss_pred             CCccEEEecCCcceeeC-C--ccccCCCCCcEEEcCCCcccccCCCCcc--CCCCCccEEEcccCeecccCC----cCCc
Q 039577           34 SFLVSLTSVAKSFYGTL-P--NELWQLQRLRIVDLSSGIIPGSLPDDTS--GDCIMLRRLSFSFNKIRGWIP----QKIG  104 (282)
Q Consensus        34 ~~L~~L~l~~~~~~~~~-~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~  104 (282)
                      ..++.+.+..+.+.... .  .....+++|++|++++|.+.+..|. .+  ..+++|++|++++|.+.+..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            35778888877664321 1  0122457799999999999877776 44  889999999999999885433    2345


Q ss_pred             CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccc---cC-CCCc-CCCCccEEEeecCcceeeccc----hh
Q 039577          105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG---HL-RSSI-YLPNLENLFLWQNNLCGIVPD----SI  175 (282)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~-~~~~-~~~~L~~L~l~~~~~~~~~~~----~l  175 (282)
                      .+++|++|++++|.+ ....+..+..+++|++|++++|.+..   .. ...+ .+++|++|++++|.++ .++.    .+
T Consensus       143 ~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH
Confidence            689999999999998 44555678889999999999998653   22 2222 6889999999999987 4443    24


Q ss_pred             hCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCee
Q 039577          176 CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDAL  255 (282)
Q Consensus       176 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~  255 (282)
                      ..+++|++|++++|.+.+..|.....+    ..++ +|++|++++|.++ .+|..+.          ++|++|++++|.+
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~----~~~~-~L~~L~Ls~N~l~-~lp~~~~----------~~L~~L~Ls~N~l  284 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRC----MWSS-ALNSLNLSFAGLE-QVPKGLP----------AKLRVLDLSSNRL  284 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSC----CCCT-TCCCEECCSSCCC-SCCSCCC----------SCCSCEECCSCCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhc----cCcC-cCCEEECCCCCCC-chhhhhc----------CCCCEEECCCCcC
Confidence            677999999999999986554422111    1124 8999999999998 7777652          5799999999999


Q ss_pred             eeecchhhhccCCCceeeccCccCCC
Q 039577          256 EGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       256 ~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      ++ +|. +..+++|+.+++++|+|+.
T Consensus       285 ~~-~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          285 NR-APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CC-Cch-hhhCCCccEEECcCCCCCC
Confidence            95 344 7888999999999999986

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=2.5e-20  Score=149.51  Aligned_cols=185  Identities=22%  Similarity=0.279  Sum_probs=144.1

Q ss_pred             CeeecCCCCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCC
Q 039577            2 GVTCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD   81 (282)
Q Consensus         2 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~   81 (282)
                      |.+|..   ..++++++++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..
T Consensus         9 gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~   81 (251)
T 3m19_A            9 GCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDD   81 (251)
T ss_dssp             SSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTT
T ss_pred             ceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhcc
Confidence            456643   5678999999886 5676554  68999999999998777777889999999999999997 455447888


Q ss_pred             CCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEE
Q 039577           82 CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENL  160 (282)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L  160 (282)
                      +++|++|++++|.+....+..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+....+..+ .+++|+.|
T Consensus        82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence            999999999999988655566788899999999999884 3333446778888888888888876666555 67888888


Q ss_pred             EeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577          161 FLWQNNLCGIVPDSICNASEVTILELSKNLFSCL  194 (282)
Q Consensus       161 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  194 (282)
                      ++++|.+++..+..+..+++|++|++++|.+...
T Consensus       161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            8888888744444667778888888888877643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.7e-21  Score=161.22  Aligned_cols=228  Identities=18%  Similarity=0.069  Sum_probs=171.7

Q ss_pred             CCceEEEEcCCCccccC-CCc--cccCCCCccEEEecCCcceeeCCccc--cCCCCCcEEEcCCCcccccCCC---CccC
Q 039577            9 HRRVTALSLPNLTLGGT-IPP--HIGNLSFLVSLTSVAKSFYGTLPNEL--WQLQRLRIVDLSSGIIPGSLPD---DTSG   80 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~---~~~~   80 (282)
                      ...++.+.+.++.+... +..  .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+.   ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            34578899988876532 111  12235679999999999998888877  8899999999999999754441   1335


Q ss_pred             CCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCC---CCCccccCCCCCcEEEecCccccccCCC---Cc-C
Q 039577           81 DCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAG---LLPSVIFNSSNIQVIILYGNHLSGHLRS---SI-Y  153 (282)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~-~  153 (282)
                      .+++|++|++++|.+....+..+..+++|++|++++|.+...   ..+..+..+++|++|++++|.++.....   .+ .
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            789999999999999866667888999999999999986221   1122346788999999999998633221   12 5


Q ss_pred             CCCccEEEeecCcceeeccchhhCC---CCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCcc
Q 039577          154 LPNLENLFLWQNNLCGIVPDSICNA---SEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVG  230 (282)
Q Consensus       154 ~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~  230 (282)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|.++        .+|..+.  + +|++|++++|.+++ +|. 
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--------~lp~~~~--~-~L~~L~Ls~N~l~~-~~~-  289 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--------QVPKGLP--A-KLRVLDLSSNRLNR-APQ-  289 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--------SCCSCCC--S-CCSCEECCSCCCCS-CCC-
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--------chhhhhc--C-CCCEEECCCCcCCC-Cch-
Confidence            7999999999999986657666655   69999999999998        3333332  3 89999999999984 333 


Q ss_pred             ccCCccCccccccccceeeccCCeeee
Q 039577          231 FGNLSNMIKCNLESLFGLLLGGDALEG  257 (282)
Q Consensus       231 ~~~l~~l~~l~l~~l~~L~l~~n~~~~  257 (282)
                      +..        +++|+.|++++|.+++
T Consensus       290 ~~~--------l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          290 PDE--------LPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTS--------CCCCSCEECSSTTTSC
T ss_pred             hhh--------CCCccEEECcCCCCCC
Confidence            333        2778999999998874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.1e-20  Score=154.46  Aligned_cols=192  Identities=18%  Similarity=0.227  Sum_probs=156.9

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|+++++.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+. .++  .+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS--AIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEE
Confidence            4689999999998864 44 58889999999999998874 444 889999999999999986 444  57889999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC  168 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (282)
                      ++++|.+.+ ++. +..+++|++|++++|.++.  .+. +..+++|+.|++++|.+....+ ...+++|+.|++++|.++
T Consensus       113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCC-chh-hcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC
Confidence            999999884 443 8889999999999998843  443 7788999999999998875443 227899999999999987


Q ss_pred             eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccccee
Q 039577          169 GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG  225 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~  225 (282)
                       .++. +..+++|++|++++|.+++.        + .+..++ +|+.|++++|.+++
T Consensus       187 -~~~~-l~~l~~L~~L~L~~N~l~~~--------~-~l~~l~-~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 -DISP-LASLPNLIEVHLKNNQISDV--------S-PLANTS-NLFIVTLTNQTITN  231 (308)
T ss_dssp             -CCGG-GGGCTTCCEEECTTSCCCBC--------G-GGTTCT-TCCEEEEEEEEEEC
T ss_pred             -cChh-hcCCCCCCEEEccCCccCcc--------c-cccCCC-CCCEEEccCCeeec
Confidence             5554 77889999999999988743        2 256676 99999999999873

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.2e-20  Score=155.97  Aligned_cols=195  Identities=19%  Similarity=0.231  Sum_probs=149.7

Q ss_pred             ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577           30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL  109 (282)
Q Consensus        30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  109 (282)
                      ...+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++.  +..+++|++|++++|.+.. + ..+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCC
Confidence            3467889999999988863 54 5788999999999999886 4554  7888999999999998874 3 357888999


Q ss_pred             eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCc
Q 039577          110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN  189 (282)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  189 (282)
                      ++|++++|.++.  ++. +..+++|++|++++|.+....+ ...+++|+.|++++|.++ .++. +..+++|++|++++|
T Consensus       110 ~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          110 KTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDN  183 (308)
T ss_dssp             CEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCC
Confidence            999999998844  443 7788899999999988875543 226888999999999887 5554 778889999999999


Q ss_pred             ccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeee
Q 039577          190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEG  257 (282)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~  257 (282)
                      .+++        ++. +..++ +|++|++++|.+++.. . +..        +++|+.|++++|.+++
T Consensus       184 ~l~~--------~~~-l~~l~-~L~~L~L~~N~l~~~~-~-l~~--------l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          184 KISD--------ISP-LASLP-NLIEVHLKNNQISDVS-P-LAN--------TSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCC--------CGG-GGGCT-TCCEEECTTSCCCBCG-G-GTT--------CTTCCEEEEEEEEEEC
T ss_pred             ccCc--------Chh-hcCCC-CCCEEEccCCccCccc-c-ccC--------CCCCCEEEccCCeeec
Confidence            8863        222 55666 8999999998887433 2 433        3678888888888874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=3.5e-24  Score=182.68  Aligned_cols=254  Identities=16%  Similarity=0.144  Sum_probs=186.0

Q ss_pred             CCceEEEEcCCCccccC----CCccccCCCCccEEEecCCcc---eeeCCccc-------cCCCCCcEEEcCCCccccc-
Q 039577            9 HRRVTALSLPNLTLGGT----IPPHIGNLSFLVSLTSVAKSF---YGTLPNEL-------WQLQRLRIVDLSSGIIPGS-   73 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l~~L~~L~l~~~~~~~~-   73 (282)
                      .+++++|++++|.+...    ++..+..+++|++|++++|.+   .+.+|..+       ..+++|+.|++++|.+.+. 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            46799999999998765    334577899999999998643   34445444       6899999999999998742 


Q ss_pred             ---CCCCccCCCCCccEEEcccCeecccCCcC----CcCC---------CCceEEEecCCCCCCCCCC---ccccCCCCC
Q 039577           74 ---LPDDTSGDCIMLRRLSFSFNKIRGWIPQK----IGNL---------TELVELYLDGNNLQAGLLP---SVIFNSSNI  134 (282)
Q Consensus        74 ---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~~~~~~~~---~~~~~~~~L  134 (282)
                         ++. .+..+++|++|++++|.+....+..    +..+         ++|++|++++|.++...++   ..+..+++|
T Consensus       111 ~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          111 QEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             HHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               344 5678899999999999987432222    3333         8999999999998433444   355678899


Q ss_pred             cEEEecCccccc-----cCCCCc-CCCCccEEEeecCcce----eeccchhhCCCCCcEEeccCcccceecCCCCCCCCC
Q 039577          135 QVIILYGNHLSG-----HLRSSI-YLPNLENLFLWQNNLC----GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPN  204 (282)
Q Consensus       135 ~~L~l~~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  204 (282)
                      ++|++++|.+..     ..+..+ .+++|+.|++++|.++    ..+|..+..+++|++|++++|.+++....   .++.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---~l~~  266 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA---AVVD  266 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH---HHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH---HHHH
Confidence            999999998862     222244 7899999999999985    46777888999999999999998754211   2344


Q ss_pred             ccc--ccccccceEEeeccccee----cCCccc-cCCccCccccccccceeeccCCeeeeecc--hhhh-ccCCCceeec
Q 039577          205 SIG--NLSTSLENFYASSCQLSG----GIPVGF-GNLSNMIKCNLESLFGLLLGGDALEGQIP--TCLA-NLTSLISLNL  274 (282)
Q Consensus       205 ~~~--~~~~~L~~L~l~~n~~~~----~~~~~~-~~l~~l~~l~l~~l~~L~l~~n~~~~~~~--~~~~-~l~~L~~l~l  274 (282)
                      .+.  .++ +|++|++++|.+++    .+|..+ .+        +++|+.|++++|.+++..+  ..+. .+++++..++
T Consensus       267 ~l~~~~~~-~L~~L~L~~n~i~~~g~~~l~~~l~~~--------l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l  337 (386)
T 2ca6_A          267 AFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEK--------MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL  337 (386)
T ss_dssp             HHHTCSSC-CCCEEECCSSCCBHHHHHHHHHHHHHH--------CTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred             HHhhccCC-CeEEEECcCCcCCHHHHHHHHHHHHhc--------CCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence            442  366 99999999999986    355544 22        3688999999999997663  3322 3444444444


Q ss_pred             c
Q 039577          275 R  275 (282)
Q Consensus       275 ~  275 (282)
                      .
T Consensus       338 ~  338 (386)
T 2ca6_A          338 D  338 (386)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=2.9e-20  Score=148.08  Aligned_cols=205  Identities=16%  Similarity=0.184  Sum_probs=147.1

Q ss_pred             eCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-ecccCCcCCcCCCCceEEEecC-CCCCCCCCCc
Q 039577           49 TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-IRGWIPQKIGNLTELVELYLDG-NNLQAGLLPS  126 (282)
Q Consensus        49 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~  126 (282)
                      .+|. +  ..+|+.|++++|.++ .++...+..+++|++|++++|. +....+..+..+++|++|++++ |.++ ...+.
T Consensus        25 ~ip~-~--~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~   99 (239)
T 2xwt_C           25 RIPS-L--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPD   99 (239)
T ss_dssp             SCCC-C--CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTT
T ss_pred             ccCC-C--CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHH
Confidence            4565 3  248899999999987 5555578889999999999886 7744445678889999999988 8773 23335


Q ss_pred             cccCCCCCcEEEecCccccccCCCCcCCCCcc---EEEeecC-cceeeccchhhCCCCCc-EEeccCcccceecCCCCCC
Q 039577          127 VIFNSSNIQVIILYGNHLSGHLRSSIYLPNLE---NLFLWQN-NLCGIVPDSICNASEVT-ILELSKNLFSCLIPNTSGV  201 (282)
Q Consensus       127 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~  201 (282)
                      .+..+++|++|++++|.++..+ ....+++|+   .|++++| .+++..+..+..+++|+ +|++++|.++. +|     
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~-----  172 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQ-----  172 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-EC-----
T ss_pred             HhCCCCCCCEEeCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cC-----
Confidence            6778889999999998887643 322566676   9999998 77744444577888999 99999998872 22     


Q ss_pred             CCCcccccccccceEEeeccc-ceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577          202 FPNSIGNLSTSLENFYASSCQ-LSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       202 l~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~  278 (282)
                        ......+ +|++|++++|. +++..+..+..+       .++|+.|++++|.++ .+|..  .+++|+.|+++++.
T Consensus       173 --~~~~~~~-~L~~L~L~~n~~l~~i~~~~~~~l-------~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          173 --GYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGV-------YSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             --TTTTTTC-EEEEEECTTCTTCCEECTTTTTTC-------SBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             --HhhcCCC-CCCEEEcCCCCCcccCCHHHhhcc-------ccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence              2222334 79999999984 774444555553       156788888889888 45544  56788888888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=5.2e-20  Score=154.78  Aligned_cols=238  Identities=18%  Similarity=0.174  Sum_probs=167.2

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE-EEcc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR-LSFS   91 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~   91 (282)
                      ++++.++++++ .+|..+  .+++++|+|++|.+...-+..+.++++|++|++++|.+.+.++...|..++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45777887775 577665  3689999999999985444568899999999999999876777767888888776 4556


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecC-ccccccCCCCc-C-CCCccEEEeecCcce
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG-NHLSGHLRSSI-Y-LPNLENLFLWQNNLC  168 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~-~-~~~L~~L~l~~~~~~  168 (282)
                      .|.+....+..+..+++|++|++++|.++. ..+..+....++..+++.+ +.+.......+ . ...++.|++++|.++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            688885556778899999999999998843 2233344556777888865 44554444444 3 356888999999997


Q ss_pred             eeccchhhCCCCCcEEeccC-cccceecCCCCCCCCC-cccccccccceEEeecccceecCCc-cccCCccCcccccccc
Q 039577          169 GIVPDSICNASEVTILELSK-NLFSCLIPNTSGVFPN-SIGNLSTSLENFYASSCQLSGGIPV-GFGNLSNMIKCNLESL  245 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~-~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~~l~l~~l  245 (282)
                       .++.......+++++++.+ |.++        .+|. .+..++ +|++|++++|+++ .+|. .+.++..|+.+++.++
T Consensus       168 -~i~~~~f~~~~L~~l~l~~~n~l~--------~i~~~~f~~l~-~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~l  236 (350)
T 4ay9_X          168 -EIHNSAFNGTQLDELNLSDNNNLE--------ELPNDVFHGAS-GPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL  236 (350)
T ss_dssp             -EECTTSSTTEEEEEEECTTCTTCC--------CCCTTTTTTEE-CCSEEECTTSCCC-CCCSSSCTTCCEEECTTCTTC
T ss_pred             -CCChhhccccchhHHhhccCCccc--------CCCHHHhccCc-ccchhhcCCCCcC-ccChhhhccchHhhhccCCCc
Confidence             6666655667889999975 4554        3443 456676 9999999999998 5554 4444444433332222


Q ss_pred             ceeeccCCeeeeecchhhhccCCCceeeccCc
Q 039577          246 FGLLLGGDALEGQIPTCLANLTSLISLNLRSI  277 (282)
Q Consensus       246 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n  277 (282)
                                 +.+|. +..+++|+.++++++
T Consensus       237 -----------~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          237 -----------KKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             -----------CCCCC-TTTCCSCCEEECSCH
T ss_pred             -----------CcCCC-chhCcChhhCcCCCC
Confidence                       24453 667778888777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=8e-20  Score=163.71  Aligned_cols=214  Identities=24%  Similarity=0.259  Sum_probs=124.0

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.++ .+|.   .+++|++|++++|.+. .+|.   .+++|+.|++++|.+. .+|.    .+++|+.|
T Consensus        60 ~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L  126 (622)
T 3g06_A           60 PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKL  126 (622)
T ss_dssp             CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEE
T ss_pred             CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEE
Confidence            467888888888776 4554   4678888888888776 3554   5677777777777665 3443    23445555


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccc-----------------cCCCCCcEEEecCccccccCCCC
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVI-----------------FNSSNIQVIILYGNHLSGHLRSS  151 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~  151 (282)
                      ++++|.+.. +|..   +++|++|++++|.++.  +|..+                 ..+++|+.|++++|.+...+. .
T Consensus       127 ~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~-~  199 (622)
T 3g06_A          127 WIFGNQLTS-LPVL---PPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT-L  199 (622)
T ss_dssp             ECCSSCCSC-CCCC---CTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-C
T ss_pred             ECCCCCCCc-CCCC---CCCCCEEECcCCcCCC--cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC-c
Confidence            555544442 3322   2344444444443321  11111                 122556666666666553221 1


Q ss_pred             c------------------CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccccccccc
Q 039577          152 I------------------YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSL  213 (282)
Q Consensus       152 ~------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L  213 (282)
                      .                  .+++|+.|++++|.++ .+|   ..+++|++|++++|.++        .+|.   .++ +|
T Consensus       200 ~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~--------~lp~---~~~-~L  263 (622)
T 3g06_A          200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT--------SLPM---LPS-GL  263 (622)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS--------CCCC---CCT-TC
T ss_pred             cchhhEEECcCCcccccCCCCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC--------cCCc---ccc-cC
Confidence            1                  1244555555555554 344   23455666666666554        2332   223 77


Q ss_pred             ceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccC
Q 039577          214 ENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLT  267 (282)
Q Consensus       214 ~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~  267 (282)
                      +.|++++|.++ .+|..+..+        ++|+.|++++|.+++..|..+..++
T Consensus       264 ~~L~Ls~N~L~-~lp~~l~~l--------~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          264 LSLSVYRNQLT-RLPESLIHL--------SSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSSCCC-SCCGGGGGS--------CTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cEEeCCCCCCC-cCCHHHhhc--------cccCEEEecCCCCCCcCHHHHHhcc
Confidence            88888888777 666666554        6788999999999988888776543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=1.2e-19  Score=145.52  Aligned_cols=180  Identities=21%  Similarity=0.223  Sum_probs=141.5

Q ss_pred             CCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEE
Q 039577           58 QRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVI  137 (282)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  137 (282)
                      ...+.++++++.+. .+|. .+  .++++.|++++|.+....+..+..+++|++|++++|.+ ....+..+..+++|++|
T Consensus        14 ~~~~~l~~~~~~l~-~~p~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPS-GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCS-CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEE
T ss_pred             CCCeEEecCCCCcc-ccCC-CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC-CccCHhHhccCCcCCEE
Confidence            46788999999986 7776 33  36899999999999876666788999999999999998 44445567888999999


Q ss_pred             EecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceE
Q 039577          138 ILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENF  216 (282)
Q Consensus       138 ~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L  216 (282)
                      ++++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+       ..+..++ +|++|
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~-~L~~L  160 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------GAFDKLT-NLQTL  160 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCT-TCCEE
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-------HHcCcCc-CCCEE
Confidence            999999987776666 78999999999999884434446788999999999998873322       2455666 89999


Q ss_pred             EeecccceecCCccccCCccCccccccccceeeccCCeeeee
Q 039577          217 YASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ  258 (282)
Q Consensus       217 ~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~  258 (282)
                      ++++|.+++..+..+..+        ++|+.|++++|.+.+.
T Consensus       161 ~L~~N~l~~~~~~~~~~l--------~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRL--------GKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTC--------TTCCEEECCSCCBCTT
T ss_pred             ECCCCcCCccCHHHHhCC--------CCCCEEEeeCCceeCC
Confidence            999999885555455554        5788888899988755

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.4e-22  Score=169.54  Aligned_cols=235  Identities=17%  Similarity=0.150  Sum_probs=179.8

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceee-CCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGT-LPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++.+++.+|.+.+..+. +..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+..+. .+..+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEE
Confidence            6899999999999876655 66799999999999998765 677788999999999999998755555 67789999999


Q ss_pred             EcccC-eeccc-CCcCCcCCCCceEEEecCC-CCCCCCCCccccCCC-CCcEEEecCcc--cc-ccCCCCc-CCCCccEE
Q 039577           89 SFSFN-KIRGW-IPQKIGNLTELVELYLDGN-NLQAGLLPSVIFNSS-NIQVIILYGNH--LS-GHLRSSI-YLPNLENL  160 (282)
Q Consensus        89 ~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~-~~~~L~~L  160 (282)
                      ++++| .+.+. ++..+..+++|++|++++| .++...++..+..++ +|++|++++|.  ++ ...+..+ .+++|+.|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            99999 56642 4555778899999999999 773322455677888 99999999994  33 1222333 68999999


Q ss_pred             EeecCc-ceeeccchhhCCCCCcEEeccCcc-cceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCc
Q 039577          161 FLWQNN-LCGIVPDSICNASEVTILELSKNL-FSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMI  238 (282)
Q Consensus       161 ~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  238 (282)
                      ++++|. +++..+..+..+++|++|++++|. +.   +.   .+ ..+..++ +|++|++++| ++   ...+..+.   
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~---~~---~~-~~l~~~~-~L~~L~l~~~-i~---~~~~~~l~---  292 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII---PE---TL-LELGEIP-TLKTLQVFGI-VP---DGTLQLLK---  292 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC---GG---GG-GGGGGCT-TCCEEECTTS-SC---TTCHHHHH---
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC---HH---HH-HHHhcCC-CCCEEeccCc-cC---HHHHHHHH---
Confidence            999998 665667788889999999999995 22   11   11 2456677 9999999998 33   22233221   


Q ss_pred             cccccccceeeccCCeeeeecchhhhc
Q 039577          239 KCNLESLFGLLLGGDALEGQIPTCLAN  265 (282)
Q Consensus       239 ~l~l~~l~~L~l~~n~~~~~~~~~~~~  265 (282)
                          .++..|++++|.+++..|..+..
T Consensus       293 ----~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          293 ----EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             ----HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             ----hhCcceEEecccCccccCCcccc
Confidence                34777889999999888776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=5.3e-23  Score=173.89  Aligned_cols=246  Identities=18%  Similarity=0.163  Sum_probs=173.9

Q ss_pred             CCceEEEEcCCCccccCCC----ccccCCC-CccEEEecCCcceeeCCccccCC-----CCCcEEEcCCCcccccCCCC-
Q 039577            9 HRRVTALSLPNLTLGGTIP----PHIGNLS-FLVSLTSVAKSFYGTLPNELWQL-----QRLRIVDLSSGIIPGSLPDD-   77 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~-   77 (282)
                      +.++++|++++|.+.+..+    .++..++ +|++|++++|.+....+..+..+     ++|++|++++|.+.+..+.. 
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            5669999999999987655    6777888 99999999999987655555554     99999999999987433320 


Q ss_pred             --ccCCC-CCccEEEcccCeecccCCcC----CcC-CCCceEEEecCCCCCCCC---CCccccCCC-CCcEEEecCcccc
Q 039577           78 --TSGDC-IMLRRLSFSFNKIRGWIPQK----IGN-LTELVELYLDGNNLQAGL---LPSVIFNSS-NIQVIILYGNHLS  145 (282)
Q Consensus        78 --~~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~---~~~~~~~~~-~L~~L~l~~~~~~  145 (282)
                        .+..+ ++|++|++++|.+....+..    +.. .++|++|++++|.++...   ++..+...+ +|++|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence              13344 89999999999988543333    333 368999999999884211   223334454 9999999999997


Q ss_pred             ccCCCCc-----CC-CCccEEEeecCcceee----ccchhhC-CCCCcEEeccCcccceecCCCCCCCCCcccccccccc
Q 039577          146 GHLRSSI-----YL-PNLENLFLWQNNLCGI----VPDSICN-ASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLE  214 (282)
Q Consensus       146 ~~~~~~~-----~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~  214 (282)
                      ...+..+     .. ++|+.|++++|.+.+.    ++..+.. .++|++|++++|.+++..+.   .+...+..++ +|+
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---~l~~~~~~l~-~L~  256 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE---NLKLLKDSLK-HLQ  256 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH---HHHHTTTTTT-TCS
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH---HHHHHHhcCC-Ccc
Confidence            6554333     34 5999999999998742    4555555 45999999999998854321   2333445566 899


Q ss_pred             eEEeecccceecCCccccCCc-cCccccccccceeeccCCeeeeecc
Q 039577          215 NFYASSCQLSGGIPVGFGNLS-NMIKCNLESLFGLLLGGDALEGQIP  260 (282)
Q Consensus       215 ~L~l~~n~~~~~~~~~~~~l~-~l~~l~l~~l~~L~l~~n~~~~~~~  260 (282)
                      +|++++|.+.+..+..+..+. .+.  .+++|+.||+++|.+.+..+
T Consensus       257 ~L~L~~n~l~~i~~~~~~~l~~~~~--~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          257 TVYLDYDIVKNMSKEQCKALGAAFP--NIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             EEEEEHHHHTTCCHHHHHHHHTTST--TCCEEEEECTTSCBCCGGGC
T ss_pred             EEEeccCCccccCHHHHHHHHHHhc--cCCceEEEecCCCcCCCcch
Confidence            999999986533222221111 001  13678999999999986643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=5.1e-19  Score=156.76  Aligned_cols=184  Identities=21%  Similarity=0.273  Sum_probs=85.8

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF   90 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   90 (282)
                      +++.|++++|.+++ +|..+.  ++|++|++++|.+. .+|   ..+++|+.|++++|.+. .+|.  +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEEC
Confidence            45555555555543 444332  45555555555554 344   23455555555555554 2443  222  5555555


Q ss_pred             ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceee
Q 039577           91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGI  170 (282)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  170 (282)
                      ++|.+.+ +|.   .+++|+.|++++|.++.  +|.   .+++|+.|++++|.++..+.  +. ++|+.|++++|.++ .
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-S
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-c
Confidence            5555553 333   34555555555555522  332   23455555555555443222  22 44555555555544 4


Q ss_pred             ccchhhCCCCC-------cEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccc
Q 039577          171 VPDSICNASEV-------TILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGF  231 (282)
Q Consensus       171 ~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  231 (282)
                      +|. +..  +|       ++|++++|.++        .+|..+..++ +|+.|++++|.+++.+|..+
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--------~lp~~l~~l~-~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT--------HIPENILSLD-PTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC--------CCCGGGGGSC-TTEEEECCSSSCCHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce--------ecCHHHhcCC-CCCEEEeeCCcCCCcCHHHH
Confidence            443 221  33       45555555444        3333344444 45555555554444444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=1.3e-18  Score=154.12  Aligned_cols=195  Identities=22%  Similarity=0.308  Sum_probs=145.7

Q ss_pred             CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEe
Q 039577           35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL  114 (282)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  114 (282)
                      +|+.|++++|.+.+ +|..+.  ++|+.|++++|.+. .+|    ..+++|++|++++|.+.+ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            89999999998875 776553  78999999999987 677    346889999999998885 666 554  8999999


Q ss_pred             cCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577          115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL  194 (282)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  194 (282)
                      ++|.++.  +|.   .+++|+.|++++|.++..+ .  .+++|+.|++++|.++ .+|. +.  ++|++|++++|.++ .
T Consensus       128 s~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp-~--~l~~L~~L~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          128 DNNQLTM--LPE---LPALLEYINADNNQLTMLP-E--LPTSLEVLSVRNNQLT-FLPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CSSCCSC--CCC---CCTTCCEEECCSSCCSCCC-C--CCTTCCEEECCSSCCS-CCCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCCcCCC--CCC---cCccccEEeCCCCccCcCC-C--cCCCcCEEECCCCCCC-Ccch-hh--CCCCEEECcCCCCC-c
Confidence            9998844  665   5788999999999887643 3  3688999999999887 5776 54  78999999999887 2


Q ss_pred             cCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccC
Q 039577          195 IPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLT  267 (282)
Q Consensus       195 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~  267 (282)
                      +|.    ++..+...+..|+.|++++|.++ .+|..+..+        ++|+.|++++|.+++.+|..+..+.
T Consensus       195 lp~----~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l--------~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          195 LPA----VPVRNHHSEETEIFFRCRENRIT-HIPENILSL--------DPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CCC----CC--------CCEEEECCSSCCC-CCCGGGGGS--------CTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hhh----HHHhhhcccccceEEecCCCcce-ecCHHHhcC--------CCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            221    22111111113489999999888 677766654        6788888899999888888877653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=2.3e-18  Score=134.07  Aligned_cols=173  Identities=23%  Similarity=0.241  Sum_probs=116.2

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF   92 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   92 (282)
                      +.++.+++.++ .+|..+  .++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence            46677777664 345433  358888899888887544455678888888888888886 56654677888888888888


Q ss_pred             CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeec
Q 039577           93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIV  171 (282)
Q Consensus        93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~  171 (282)
                      |.+....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+.   
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---  161 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---  161 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence            8877433444677888888888888773 2233345666777777777777665544444 5666777777666554   


Q ss_pred             cchhhCCCCCcEEeccCcccceecCC
Q 039577          172 PDSICNASEVTILELSKNLFSCLIPN  197 (282)
Q Consensus       172 ~~~l~~~~~L~~L~l~~~~~~~~~~~  197 (282)
                          +.+++++.|++..|.+++.+|+
T Consensus       162 ----~~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          162 ----CTCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             ----CCTTTTHHHHHHHHHCTTTBBC
T ss_pred             ----cCCCCHHHHHHHHHhCCceeec
Confidence                2234566666666666654444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.1e-18  Score=136.02  Aligned_cols=164  Identities=22%  Similarity=0.250  Sum_probs=136.1

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence            568999999999998666667889999999999999998544455678999999999999997 6666578899999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC  168 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (282)
                      ++++|.+....+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+..      .+++|+.++++.|.++
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCT
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCC
Confidence            99999998544455788999999999999984 3334457789999999999997642      3678899999999999


Q ss_pred             eeccchhhCCCC
Q 039577          169 GIVPDSICNASE  180 (282)
Q Consensus       169 ~~~~~~l~~~~~  180 (282)
                      +.+|..++.++.
T Consensus       179 g~ip~~~~~l~~  190 (208)
T 2o6s_A          179 GVVRNSAGSVAP  190 (208)
T ss_dssp             TTBBCTTSSBCT
T ss_pred             ceeeccCccccC
Confidence            889987765544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.77  E-value=1e-20  Score=169.80  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=49.3

Q ss_pred             cccccceEEee----cccceec-----CCccccCCccCcccc-------------------ccccceeeccCCeeeee-c
Q 039577          209 LSTSLENFYAS----SCQLSGG-----IPVGFGNLSNMIKCN-------------------LESLFGLLLGGDALEGQ-I  259 (282)
Q Consensus       209 ~~~~L~~L~l~----~n~~~~~-----~~~~~~~l~~l~~l~-------------------l~~l~~L~l~~n~~~~~-~  259 (282)
                      ++ +|++|+++    .|.+++.     ++..+..+++|+.|+                   +++|++|++++|.+++. +
T Consensus       402 ~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          402 LK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             CC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             CC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence            44 78888886    3455432     222244566666665                   35689999999998864 4


Q ss_pred             chhhhccCCCceeeccCccCCC
Q 039577          260 PTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       260 ~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      +..+..+++|++|++++|.|++
T Consensus       481 ~~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCCCBH
T ss_pred             HHHHhcCcccCeeeccCCCCcH
Confidence            4566788999999999998763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=7.4e-18  Score=141.64  Aligned_cols=218  Identities=17%  Similarity=0.131  Sum_probs=158.1

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCc-cccCCCCCcE-EEcCCCcccccCCCCccCCCCCcc
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPN-ELWQLQRLRI-VDLSSGIIPGSLPDDTSGDCIMLR   86 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~-L~l~~~~~~~~~~~~~~~~l~~L~   86 (282)
                      +.++++|++++|.++..-+.+|.++++|++|+|++|.+.+.+|. .+.++++++. +.+..|.+. .++...+..+++|+
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQ  107 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCC
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhccccc
Confidence            57899999999999754445789999999999999998766654 5678888876 556668886 66655889999999


Q ss_pred             EEEcccCeecccCCcCCcCCCCceEEEecCC-CCCCCCCCccccCC-CCCcEEEecCccccccCCCCcCCCCccEEEeec
Q 039577           87 RLSFSFNKIRGWIPQKIGNLTELVELYLDGN-NLQAGLLPSVIFNS-SNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQ  164 (282)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  164 (282)
                      +|++.+|.+....+..+.....+..+++.++ .++. ..+..+... ..++.|++++|.++...+..+...+|+++.+.+
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred             cccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence            9999999988544445566778889999764 3422 122234444 468899999999987766666677899999976


Q ss_pred             -Ccceeeccc-hhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc
Q 039577          165 -NNLCGIVPD-SICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN  241 (282)
Q Consensus       165 -~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~  241 (282)
                       |.++ .+|. .+..+++|++|++++|.++        .+|...  +. +|++|.+.++...+.+|. +..+++|+.++
T Consensus       187 ~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~--------~lp~~~--~~-~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~  252 (350)
T 4ay9_X          187 NNNLE-ELPNDVFHGASGPVILDISRTRIH--------SLPSYG--LE-NLKKLRARSTYNLKKLPT-LEKLVALMEAS  252 (350)
T ss_dssp             CTTCC-CCCTTTTTTEECCSEEECTTSCCC--------CCCSSS--CT-TCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred             CCccc-CCCHHHhccCcccchhhcCCCCcC--------ccChhh--hc-cchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence             5554 7765 5688899999999999987        333322  22 677777766543345553 55555444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.77  E-value=3.5e-20  Score=166.32  Aligned_cols=267  Identities=13%  Similarity=0.019  Sum_probs=138.7

Q ss_pred             CCceEEEEcCCCccc----cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCccc-------------
Q 039577            9 HRRVTALSLPNLTLG----GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP-------------   71 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-------------   71 (282)
                      .+++++|++++|.+.    +.++..+.++++|++|++++|.+.+ ++..+..+++|+.++++.+...             
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            367888888888775    2344445577888888888877653 4445555666666666532211             


Q ss_pred             -------------ccCCCCccCCCCCccEEEcccCeecccCC-cCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEE
Q 039577           72 -------------GSLPDDTSGDCIMLRRLSFSFNKIRGWIP-QKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVI  137 (282)
Q Consensus        72 -------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  137 (282)
                                   ..++. .+..+++|++|++++|.+.+... ..+..+++|++|++.+ .+....++..+..+++|++|
T Consensus       270 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             TTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEE
T ss_pred             ccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEE
Confidence                         11222 33345555566655555332111 1134455555555542 22111122222344556666


Q ss_pred             EecC-----------ccccccCCCC-c-CCCCccEEEeecCcceeeccchhhC-CCCCcEEecc----CcccceecCCCC
Q 039577          138 ILYG-----------NHLSGHLRSS-I-YLPNLENLFLWQNNLCGIVPDSICN-ASEVTILELS----KNLFSCLIPNTS  199 (282)
Q Consensus       138 ~l~~-----------~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~~~~~~  199 (282)
                      ++..           +.++...... . .+++|+.|+++.+.+++..+..+.. +++|++|++.    .+.+++...+  
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~--  425 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD--  425 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH--
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH--
Confidence            6652           2222111111 1 3566666666555555433333433 5666666665    3333321000  


Q ss_pred             CCCCCcccccccccceEEeeccc--ceecCCcccc-CCccCcccc-----------------ccccceeeccCCeeeeec
Q 039577          200 GVFPNSIGNLSTSLENFYASSCQ--LSGGIPVGFG-NLSNMIKCN-----------------LESLFGLLLGGDALEGQI  259 (282)
Q Consensus       200 ~~l~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~-~l~~l~~l~-----------------l~~l~~L~l~~n~~~~~~  259 (282)
                      ..++..+..++ +|++|+++.|.  +++..+..+. .+++|+.|+                 +++|++|++++|.+++..
T Consensus       426 ~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  504 (592)
T 3ogk_B          426 NGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA  504 (592)
T ss_dssp             HHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred             HHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence            00111123344 56666665332  3322222221 234444443                 478999999999987653


Q ss_pred             -chhhhccCCCceeeccCccCCC
Q 039577          260 -PTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       260 -~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                       +.....+++|++|++++|++++
T Consensus       505 ~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          505 IAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHHHHCSSCCEEEEESCBCCT
T ss_pred             HHHHHHhcCccCeeECcCCcCCH
Confidence             4455689999999999999986

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.1e-17  Score=149.73  Aligned_cols=171  Identities=17%  Similarity=0.227  Sum_probs=105.7

Q ss_pred             cCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCce
Q 039577           31 GNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV  110 (282)
Q Consensus        31 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  110 (282)
                      ..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++.  +..+++|+.|++++|.+.. + ..+..+++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~  112 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK  112 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred             hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence            455666777777666642 33 4566777777777777665 3332  5666777777777776663 2 2566667777


Q ss_pred             EEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCc
Q 039577          111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKN  189 (282)
Q Consensus       111 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  189 (282)
                      .|++++|.+..  + ..+..+++|+.|++++|.+...  ..+ .+++|+.|++++|.+.+ ++. +..+++|+.|++++|
T Consensus       113 ~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          113 SLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             EEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred             EEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCC
Confidence            77777776632  3 2456667777777777766543  223 56677777777777663 332 566677777777777


Q ss_pred             ccceecCCCCCCCCCcccccccccceEEeeccccee
Q 039577          190 LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG  225 (282)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~  225 (282)
                      .+++        ++ .+..++ +|+.|++++|.+.+
T Consensus       186 ~i~~--------l~-~l~~l~-~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          186 HISD--------LR-ALAGLK-NLDVLELFSQECLN  211 (605)
T ss_dssp             CCCB--------CG-GGTTCT-TCSEEECCSEEEEC
T ss_pred             CCCC--------Ch-HHccCC-CCCEEEccCCcCcC
Confidence            6652        21 344555 67777777776663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.7e-17  Score=135.88  Aligned_cols=171  Identities=16%  Similarity=0.217  Sum_probs=119.2

Q ss_pred             ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577           30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL  109 (282)
Q Consensus        30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  109 (282)
                      +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++.  +..+++|++|++++|.+.. ++ .+..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred             hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence            3456777888887777753 33 3667788888888887775 3443  6677788888888877763 33 36777888


Q ss_pred             eEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577          110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK  188 (282)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  188 (282)
                      ++|++++|.++.  + ..+..+++|+.|++++|.+...  ..+ .+++|+.|++++|.++ .++. +..+++|++|++++
T Consensus       115 ~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          115 KSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK  187 (291)
T ss_dssp             CEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-cchh-hcCCCccCEEECCC
Confidence            888888887733  3 3466777888888888777644  233 6778888888888776 4443 67778888888888


Q ss_pred             cccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577          189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS  224 (282)
Q Consensus       189 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~  224 (282)
                      |.+++        ++ .+..++ +|+.|++++|.++
T Consensus       188 N~i~~--------l~-~l~~l~-~L~~L~l~~n~i~  213 (291)
T 1h6t_A          188 NHISD--------LR-ALAGLK-NLDVLELFSQECL  213 (291)
T ss_dssp             SCCCB--------CG-GGTTCT-TCSEEEEEEEEEE
T ss_pred             CcCCC--------Ch-hhccCC-CCCEEECcCCccc
Confidence            87763        22 255566 7888888888776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=3e-17  Score=134.40  Aligned_cols=170  Identities=21%  Similarity=0.273  Sum_probs=144.3

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .+++++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+. .++  .+..+++|++|
T Consensus        45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVK-DLS--SLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CGG--GGTTCTTCCEE
T ss_pred             cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCC-CCh--hhccCCCCCEE
Confidence            4679999999998864 34 48889999999999999985 444 889999999999999986 444  47899999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcce
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLC  168 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  168 (282)
                      ++++|.+.. + ..+..+++|++|++++|.++.  + ..+..+++|+.|++++|.+....+ ...+++|+.|++++|.++
T Consensus       118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence            999999884 3 567889999999999999844  4 568889999999999999986554 227999999999999997


Q ss_pred             eeccchhhCCCCCcEEeccCcccce
Q 039577          169 GIVPDSICNASEVTILELSKNLFSC  193 (282)
Q Consensus       169 ~~~~~~l~~~~~L~~L~l~~~~~~~  193 (282)
                       .++. +..+++|+.|++++|.+..
T Consensus       192 -~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          192 -DLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             -CChh-hccCCCCCEEECcCCcccC
Confidence             5654 7889999999999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=9.4e-17  Score=126.03  Aligned_cols=151  Identities=21%  Similarity=0.249  Sum_probs=125.2

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF   92 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   92 (282)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. .+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCC
Confidence            46888888875 5676554  6899999999999876666788999999999999999744444 889999999999999


Q ss_pred             CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577           93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus        93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  168 (282)
                      |.+....+..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+....+..+ .+++|+.+++++|.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCC-CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            999843334468899999999999998 44456678889999999999999987776666 7899999999999886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=1.4e-16  Score=125.86  Aligned_cols=150  Identities=20%  Similarity=0.198  Sum_probs=103.2

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF   92 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   92 (282)
                      +.++.+++.+. .+|..+.  ++|++|++++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence            45777776664 5565443  78888888888887666777778888888888888875 66654667788888888888


Q ss_pred             CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577           93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus        93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  168 (282)
                      |.+....+..+..+++|++|++++|.++  .+|..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            8877433444677788888888888774  366666666677777777666664444334 4566666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=2.6e-16  Score=123.53  Aligned_cols=152  Identities=24%  Similarity=0.341  Sum_probs=121.7

Q ss_pred             cEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecC
Q 039577           37 VSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG  116 (282)
Q Consensus        37 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  116 (282)
                      +.++++++.+. .+|..+.  ++++.|++++|.+. .++...+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            56788877776 4666554  68999999999987 55555788899999999999998876678888999999999999


Q ss_pred             CCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccce
Q 039577          117 NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC  193 (282)
Q Consensus       117 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  193 (282)
                      |.++. ..+..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus        90 N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           90 NKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            98843 233346778999999999999987777666 78899999999999884445567788899999999998863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.5e-16  Score=125.61  Aligned_cols=136  Identities=22%  Similarity=0.253  Sum_probs=118.2

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence            678999999999999888888999999999999999997444455678999999999999997 6666578899999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccccc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGH  147 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  147 (282)
                      ++++|.+. .+|..+..+++|++|++++|.++. ..+..+..+++|+.|++.+|.+...
T Consensus       118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             eccCCccc-ccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCccCC
Confidence            99999999 688889999999999999999843 3335678899999999999987643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=5.5e-17  Score=125.17  Aligned_cols=154  Identities=13%  Similarity=0.055  Sum_probs=118.3

Q ss_pred             ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCc
Q 039577           30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTEL  109 (282)
Q Consensus        30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  109 (282)
                      ...+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .++  .+..+++|++|++++|.+.+..+..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            356778889999888887 566 5788889999999988664 333  56788899999999888886667778888999


Q ss_pred             eEEEecCCCCCCCCCCccccCCCCCcEEEecCcc-ccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577          110 VELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH-LSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK  188 (282)
Q Consensus       110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  188 (282)
                      ++|++++|.+ ....+..+..+++|++|++++|. +... +....+++|+.|++++|.++ .++ .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i-~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAH-DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBC-BGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCcc-CcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeC
Confidence            9999998887 43345667788899999999887 5433 32227888999999999887 555 677888999999999


Q ss_pred             cccc
Q 039577          189 NLFS  192 (282)
Q Consensus       189 ~~~~  192 (282)
                      |.+.
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            9876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=2.3e-16  Score=123.74  Aligned_cols=150  Identities=19%  Similarity=0.274  Sum_probs=78.7

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCC-ccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLP-NELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS   91 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   91 (282)
                      ++++++++.++ .+|..+.  +.++.|++++|.+....+ ..+..+++|+.|++++|.+. .++...+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence            36677776664 3555442  345667777776665433 23456666666666666665 3333355566666666666


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      +|.+....+..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            6665543333355556666666666555 22223344444444545444444443333333 344444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=5.3e-17  Score=125.29  Aligned_cols=153  Identities=14%  Similarity=0.176  Sum_probs=122.2

Q ss_pred             ccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCC
Q 039577           54 LWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSN  133 (282)
Q Consensus        54 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  133 (282)
                      ...+++|+.|++++|.+. .++  .+..+++|++|++++|.+..  +..+..+++|++|++++|.+ ....+..+..+++
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~  113 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTS  113 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTC-BGGGSCCCTTCTT
T ss_pred             hhhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCcc-CcccChhhcCCCC
Confidence            356889999999999986 666  47889999999999997662  44678899999999999988 4334566888999


Q ss_pred             CcEEEecCccccccCCCCc-CCCCccEEEeecCc-ceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccccccc
Q 039577          134 IQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNN-LCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLST  211 (282)
Q Consensus       134 L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~  211 (282)
                      |++|++++|.+....+..+ .+++|+.|++++|. +. .++ .+..+++|++|++++|.+++        ++ .+..++ 
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~--------~~-~l~~l~-  181 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD--------YR-GIEDFP-  181 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC--------CT-TGGGCS-
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC--------hH-HhccCC-
Confidence            9999999999886555545 78999999999998 54 666 57889999999999998873        33 456677 


Q ss_pred             ccceEEeecccce
Q 039577          212 SLENFYASSCQLS  224 (282)
Q Consensus       212 ~L~~L~l~~n~~~  224 (282)
                      +|++|++++|.+.
T Consensus       182 ~L~~L~l~~N~i~  194 (197)
T 4ezg_A          182 KLNQLYAFSQTIG  194 (197)
T ss_dssp             SCCEEEECBC---
T ss_pred             CCCEEEeeCcccC
Confidence            8999999999876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=9.9e-17  Score=143.49  Aligned_cols=191  Identities=21%  Similarity=0.252  Sum_probs=148.2

Q ss_pred             CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEe
Q 039577           35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL  114 (282)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  114 (282)
                      .+..+.+..+.+....  .+..+.+|+.|++++|.+. .++  .+..+++|+.|++++|.+.+ ++. +..+++|+.|++
T Consensus        22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEEC
Confidence            4444455555554332  2457899999999999986 565  47889999999999999885 444 889999999999


Q ss_pred             cCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577          115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL  194 (282)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  194 (282)
                      ++|.+..  ++ .+..+++|+.|++++|.+... +....+++|+.|++++|.++ .+ ..+..+++|+.|++++|.+.+.
T Consensus        95 s~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           95 DENKIKD--LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CSSCCCC--CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCC
T ss_pred             cCCCCCC--Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCc
Confidence            9999843  44 688899999999999998753 22227899999999999997 44 5678899999999999988743


Q ss_pred             cCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeee
Q 039577          195 IPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ  258 (282)
Q Consensus       195 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~  258 (282)
                              ++ +..++ +|+.|++++|.+.+ ++ .+..+        ++|+.|++++|.+.+.
T Consensus       169 --------~~-l~~l~-~L~~L~Ls~N~i~~-l~-~l~~l--------~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          169 --------VP-LAGLT-KLQNLYLSKNHISD-LR-ALAGL--------KNLDVLELFSQECLNK  212 (605)
T ss_dssp             --------GG-GTTCT-TCCEEECCSSCCCB-CG-GGTTC--------TTCSEEECCSEEEECC
T ss_pred             --------hh-hccCC-CCCEEECcCCCCCC-Ch-HHccC--------CCCCEEEccCCcCcCC
Confidence                    22 56676 99999999999874 33 34443        6788889999988854

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=2.5e-16  Score=123.58  Aligned_cols=155  Identities=17%  Similarity=0.231  Sum_probs=131.0

Q ss_pred             ccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEec
Q 039577           36 LVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLD  115 (282)
Q Consensus        36 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  115 (282)
                      -++++++++.+. .+|..+.  ..++.|++++|.+.+..+...+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            458999999887 4776553  4678999999999854455468899999999999999996556689999999999999


Q ss_pred             CCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577          116 GNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL  194 (282)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  194 (282)
                      +|.+ ....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+++..|..+..+++|++|++++|.+...
T Consensus        90 ~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           90 SNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SSCC-CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCcc-CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            9999 44445568889999999999999998877777 889999999999999866688888999999999999998854

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=1.4e-16  Score=134.32  Aligned_cols=178  Identities=24%  Similarity=0.254  Sum_probs=126.6

Q ss_pred             CcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCc-CCCCceEEEecCCCCCCCCCCccccCCCCCcEEE
Q 039577           60 LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG-NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVII  138 (282)
Q Consensus        60 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  138 (282)
                      -+.++++++.+. .+|. .+  ...++.|++++|.+....+..+. .+++|++|++++|.++ ...+..+..+++|++|+
T Consensus        20 ~~~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TTEEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence            367889888886 6776 22  34688899999988865455565 7889999999998883 33345577888888899


Q ss_pred             ecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcc----ccccccc
Q 039577          139 LYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSI----GNLSTSL  213 (282)
Q Consensus       139 l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~----~~~~~~L  213 (282)
                      +++|.+....+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|.+++        +|..+    ..++ +|
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--------l~~~~~~~~~~l~-~L  165 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--------FPVELIKDGNKLP-KL  165 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--------CCGGGTC----CT-TC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--------eCHHHhcCcccCC-cC
Confidence            88888876666555 78888888888888875556777888888888888888873        33322    3455 88


Q ss_pred             ceEEeecccceecCCccccCCccCccccccccceeeccCCeeee
Q 039577          214 ENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEG  257 (282)
Q Consensus       214 ~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~  257 (282)
                      +.|++++|.+++..+..+..++.+      .++.|++++|.+..
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l~~~------~l~~l~l~~N~~~C  203 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKLPAW------VKNGLYLHNNPLEC  203 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHSCHH------HHTTEECCSSCEEC
T ss_pred             CEEECCCCCCCccCHHHhhhccHh------hcceEEecCCCccC
Confidence            888888888873332344443221      14678888887763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=1.2e-16  Score=134.92  Aligned_cols=174  Identities=21%  Similarity=0.159  Sum_probs=122.7

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCcccc-CCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELW-QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS   91 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   91 (282)
                      +.++++++.++ .+|..+.  +.++.|++++|.+....+..+. .+++|+.|++++|.+. .++...+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            46777777775 3565443  4578888888888765555555 7888888888888886 4554467788888888888


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc----CCCCccEEEeecCcc
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI----YLPNLENLFLWQNNL  167 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~  167 (282)
                      +|.+....+..+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+...+...+    .+++|+.|++++|.+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            8887754455677788888888888887 33345567778888888888888775544332    377888888888888


Q ss_pred             eeecc-chhhCCCC--CcEEeccCcccc
Q 039577          168 CGIVP-DSICNASE--VTILELSKNLFS  192 (282)
Q Consensus       168 ~~~~~-~~l~~~~~--L~~L~l~~~~~~  192 (282)
                      + .+| ..+..++.  ++.|++++|.+.
T Consensus       176 ~-~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 K-KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             C-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             C-ccCHHHhhhccHhhcceEEecCCCcc
Confidence            7 444 34555554  367888887765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.4e-17  Score=132.04  Aligned_cols=148  Identities=22%  Similarity=0.240  Sum_probs=69.1

Q ss_pred             ccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCC
Q 039577           54 LWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSN  133 (282)
Q Consensus        54 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  133 (282)
                      +..+++|+.|++++|.+. .++  .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++.  ++.. .. ++
T Consensus        37 ~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~  107 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN--LNGI-PS-AC  107 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC--CTTC-CC-SS
T ss_pred             hhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC--cCcc-cc-Cc
Confidence            334445555555554443 333  23444555555555554442 222 4445555555555554422  2221 11 44


Q ss_pred             CcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccc
Q 039577          134 IQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS  212 (282)
Q Consensus       134 L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~  212 (282)
                      |+.|++++|.+....  .+ .+++|+.|++++|.++ .++ .+..+++|++|++++|.+++.         ..+..++ +
T Consensus       108 L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~i~~~---------~~l~~l~-~  173 (263)
T 1xeu_A          108 LSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT---------GGLTRLK-K  173 (263)
T ss_dssp             CCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEECTTSCCCBC---------TTSTTCC-C
T ss_pred             ccEEEccCCccCCCh--hhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEECCCCcCcch---------HHhccCC-C
Confidence            555555555544321  12 4555555555555554 333 344555555555555555422         1233344 5


Q ss_pred             cceEEeecccce
Q 039577          213 LENFYASSCQLS  224 (282)
Q Consensus       213 L~~L~l~~n~~~  224 (282)
                      |+.|++++|.+.
T Consensus       174 L~~L~l~~N~~~  185 (263)
T 1xeu_A          174 VNWIDLTGQKCV  185 (263)
T ss_dssp             CCEEEEEEEEEE
T ss_pred             CCEEeCCCCccc
Confidence            555666555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.67  E-value=1e-18  Score=156.83  Aligned_cols=85  Identities=13%  Similarity=0.077  Sum_probs=45.9

Q ss_pred             CceEEEEcCCCccccCCCcccc-CCCCccEEEecCCc-ceee-CCccccCCCCCcEEEcCCCcccccCCC---CccCCCC
Q 039577           10 RRVTALSLPNLTLGGTIPPHIG-NLSFLVSLTSVAKS-FYGT-LPNELWQLQRLRIVDLSSGIIPGSLPD---DTSGDCI   83 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~   83 (282)
                      +++++|+++++.+.+..+..+. .+++|+.|++++|. +... ++....++++|++|++++|.+.+..+.   .....++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5677777777766554444443 46677777777763 3221 233333566777777776665422111   0122444


Q ss_pred             CccEEEcccCe
Q 039577           84 MLRRLSFSFNK   94 (282)
Q Consensus        84 ~L~~L~l~~~~   94 (282)
                      +|++|++.+|.
T Consensus       185 ~L~~L~l~~~~  195 (594)
T 2p1m_B          185 SLVSLNISCLA  195 (594)
T ss_dssp             CCCEEECTTCC
T ss_pred             cCcEEEecccC
Confidence            56666555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.66  E-value=1.4e-18  Score=155.94  Aligned_cols=39  Identities=13%  Similarity=0.002  Sum_probs=30.5

Q ss_pred             ccccceeeccCCeeeeecchhh-hccCCCceeeccCccCC
Q 039577          242 LESLFGLLLGGDALEGQIPTCL-ANLTSLISLNLRSIRLN  280 (282)
Q Consensus       242 l~~l~~L~l~~n~~~~~~~~~~-~~l~~L~~l~l~~n~~~  280 (282)
                      +++|+.|++++|.+++..+..+ ..+++|++|++++|.++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            4568888898888876655555 66889999999998875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.2e-17  Score=151.06  Aligned_cols=191  Identities=18%  Similarity=0.094  Sum_probs=101.6

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEec-----CCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCC
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSV-----AKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCI   83 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~   83 (282)
                      .+++++|++.++.+.. .+..+....+|+.+.+.     .|.+. ..+..+..+..|+.|++++|.+. .++. .+..++
T Consensus       172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~~l~  247 (727)
T 4b8c_D          172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISA-NIFKYD  247 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGGGCC
T ss_pred             CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCCh-hhcCCC
Confidence            3678888888887754 33333222333333322     22222 34566777888888888888886 6776 455788


Q ss_pred             CccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEe
Q 039577           84 MLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFL  162 (282)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l  162 (282)
                      +|++|++++|.+. .+|..+..+++|++|++++|.++  .+|..+..+.+|++|++++|.+... +..+ .+++|+.|++
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L  323 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGV  323 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEEC
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeC
Confidence            8888888888888 67888888888888888888884  4777788888888888888887743 4445 7888888888


Q ss_pred             ecCcceeeccchhhCCC-CCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecc
Q 039577          163 WQNNLCGIVPDSICNAS-EVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSC  221 (282)
Q Consensus       163 ~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n  221 (282)
                      ++|.+++..|..+.... ....+++++|.+++.+|.              .++.|+++.|
T Consensus       324 ~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~--------------~l~~l~l~~n  369 (727)
T 4b8c_D          324 EGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH--------------ERRFIEINTD  369 (727)
T ss_dssp             TTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--------------C---------
T ss_pred             CCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--------------ccceeEeecc
Confidence            88888766665554322 123466777777654432              4566666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=4.7e-16  Score=125.38  Aligned_cols=166  Identities=19%  Similarity=0.263  Sum_probs=119.9

Q ss_pred             eEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577           12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS   91 (282)
Q Consensus        12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   91 (282)
                      ++.++++++.+++ ++ .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .++.  +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECC
Confidence            4445666666653 22 4667788888888888776 355 5777888888888888876 4443  6778888888888


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceee
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGI  170 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~  170 (282)
                      +|.+.+ ++.. .. ++|++|++++|.++.  ++ .+..+++|+.|++++|.++...  .+ .+++|+.|++++|.+++ 
T Consensus        94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~-  164 (263)
T 1xeu_A           94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRD--TD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN-  164 (263)
T ss_dssp             SSCCSC-CTTC-CC-SSCCEEECCSSCCSB--SG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB-
T ss_pred             CCccCC-cCcc-cc-CcccEEEccCCccCC--Ch-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc-
Confidence            888774 4432 23 788888888888743  33 4777888888888888877542  33 67888888888888873 


Q ss_pred             ccchhhCCCCCcEEeccCccccee
Q 039577          171 VPDSICNASEVTILELSKNLFSCL  194 (282)
Q Consensus       171 ~~~~l~~~~~L~~L~l~~~~~~~~  194 (282)
                      . ..+..+++|++|++++|.+...
T Consensus       165 ~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h-HHhccCCCCCEEeCCCCcccCC
Confidence            3 5567788888888888887643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=5.2e-16  Score=116.53  Aligned_cols=107  Identities=24%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             CCceEEEEcCCCccc-cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577            9 HRRVTALSLPNLTLG-GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   87 (282)
                      ++++++|++++|.+. +.+|..+..+++|++|++++|.+...  ..+..+++|+.|++++|.+.+.+|. .+..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCE
Confidence            345555555555554 34454455555555555555555432  3444555555555555555432332 3334555555


Q ss_pred             EEcccCeecccCC--cCCcCCCCceEEEecCCCC
Q 039577           88 LSFSFNKIRGWIP--QKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        88 L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~  119 (282)
                      |++++|.+.+ ++  ..+..+++|++|++++|.+
T Consensus       100 L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l  132 (168)
T 2ell_A          100 LNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEV  132 (168)
T ss_dssp             EECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGG
T ss_pred             EeccCCccCc-chhHHHHhcCCCCCEEEeeCCcC
Confidence            5555555442 22  3344455555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=5e-15  Score=111.13  Aligned_cols=130  Identities=19%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             CCCcEEEcCCCccc-ccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcE
Q 039577           58 QRLRIVDLSSGIIP-GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQV  136 (282)
Q Consensus        58 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  136 (282)
                      ++|+.|++++|.+. +.+|. .+..+++|++|++++|.+.. + ..+..+++|++|++++|.+ ....|..+..+++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRI-FGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCC-CSCCCHHHHHCTTCCE
T ss_pred             ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcC-chHHHHHHhhCCCCCE
Confidence            44444444444443 23333 33444455555555444442 2 3344455555555555554 2223333444555555


Q ss_pred             EEecCccccccCC-CCc-CCCCccEEEeecCcceeeccc----hhhCCCCCcEEeccCcccc
Q 039577          137 IILYGNHLSGHLR-SSI-YLPNLENLFLWQNNLCGIVPD----SICNASEVTILELSKNLFS  192 (282)
Q Consensus       137 L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~  192 (282)
                      |++++|.++.... ..+ .+++|+.|++++|.++ ..+.    .+..+++|++|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555555543221 222 5666777777777666 4443    5666777777777777665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=1.5e-15  Score=111.68  Aligned_cols=108  Identities=23%  Similarity=0.281  Sum_probs=59.8

Q ss_pred             CCceEEEEcCCCccc-cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccE
Q 039577            9 HRRVTALSLPNLTLG-GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRR   87 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~   87 (282)
                      ++++++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+.+|. .+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCE
Confidence            355666666666665 45555556666666666666655533  4455566666666666665533333 3444556666


Q ss_pred             EEcccCeeccc-CCcCCcCCCCceEEEecCCCC
Q 039577           88 LSFSFNKIRGW-IPQKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        88 L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~  119 (282)
                      |++++|.+.+. .+..+..+++|++|++++|.+
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            66665555531 124455555555555555555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=2.3e-14  Score=109.95  Aligned_cols=128  Identities=18%  Similarity=0.203  Sum_probs=86.1

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCc-cccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPN-ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS   91 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   91 (282)
                      ++++++++.+ +.+|..+.  .+|++|++++|.+....+. .+..+++|+.|++++|.+.+..|. .+..+++|++|+++
T Consensus        11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred             CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECC
Confidence            5778888877 35666554  3788888888877644333 366788888888888887644344 67777788888888


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcccc
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLS  145 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  145 (282)
                      +|.+.+..+..+..+++|++|++++|.+ .+..|..+..+++|++|++++|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCC-CEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcC-CeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            8777765555577777777777777776 3334445555566666666655554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=5.6e-18  Score=150.63  Aligned_cols=182  Identities=15%  Similarity=0.044  Sum_probs=135.8

Q ss_pred             cCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc-------------ccccCCCCccCCCCCccEEE-cccCeec
Q 039577           31 GNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI-------------IPGSLPDDTSGDCIMLRRLS-FSFNKIR   96 (282)
Q Consensus        31 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~~~   96 (282)
                      ..+++|+.|++++|.+. .+|..+.++++|+.|++++|.             ..+..|. .+..+++|+.|+ ++.+.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhcccc
Confidence            46788999999998886 688888899999999986653             2222233 556677777777 4444322


Q ss_pred             ccCCc------CCc--CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577           97 GWIPQ------KIG--NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        97 ~~~~~------~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      . ++.      .+.  ....|+.|++++|.++.  +|. +..+++|+.|++++|.++ .+|..+ .+++|+.|++++|.+
T Consensus       424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL  498 (567)
T ss_dssp             H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred             h-hhhhhhhcccccccCccCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC
Confidence            1 110      000  01358999999999854  676 888999999999999998 445556 899999999999999


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP  228 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~  228 (282)
                      + .+| .++.+++|++|++++|.+++..      .|..+..++ +|+.|++++|.+++..|
T Consensus       499 ~-~lp-~l~~l~~L~~L~Ls~N~l~~~~------~p~~l~~l~-~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          499 E-NVD-GVANLPRLQELLLCNNRLQQSA------AIQPLVSCP-RLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             C-CCG-GGTTCSSCCEEECCSSCCCSSS------TTGGGGGCT-TCCEEECTTSGGGGSSS
T ss_pred             C-CCc-ccCCCCCCcEEECCCCCCCCCC------CcHHHhcCC-CCCEEEecCCcCCCCcc
Confidence            8 577 7889999999999999987332      156788888 99999999999985433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=4.9e-18  Score=150.99  Aligned_cols=195  Identities=18%  Similarity=0.144  Sum_probs=103.8

Q ss_pred             cCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-------------ecccCCcCCcCCCCceEEE-ecCCCCC
Q 039577           55 WQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-------------IRGWIPQKIGNLTELVELY-LDGNNLQ  120 (282)
Q Consensus        55 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~  120 (282)
                      ..++.|+.|++++|.+. .+|. .++.+++|+.|++.+|.             ..+..|..+..+++|+.|+ ++.+.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            34566666666666664 5555 55666666666654432             1122233344445555555 3332210


Q ss_pred             CCCCCc------ccc--CCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccc
Q 039577          121 AGLLPS------VIF--NSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS  192 (282)
Q Consensus       121 ~~~~~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  192 (282)
                      .  ++.      .+.  ....|+.|++++|.++.. +....+++|+.|++++|.++ .+|..++.+++|++|++++|.++
T Consensus       424 ~--L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 D--LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             H--HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             h--hhhhhhhcccccccCccCceEEEecCCCCCCC-cCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence            0  000      000  012466666666666543 23125666666666666666 66666666666666666666665


Q ss_pred             eecCCCCCCCCCcccccccccceEEeecccceecC-CccccCCccCccccccccceeeccCCeeeeecch---hhhccCC
Q 039577          193 CLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGI-PVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPT---CLANLTS  268 (282)
Q Consensus       193 ~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~---~~~~l~~  268 (282)
                              .+| .+..++ +|++|++++|.+++.. |..+..+        ++|+.|++++|.+++..+.   .+..+|+
T Consensus       500 --------~lp-~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l--------~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          500 --------NVD-GVANLP-RLQELLLCNNRLQQSAAIQPLVSC--------PRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             --------CCG-GGTTCS-SCCEEECCSSCCCSSSTTGGGGGC--------TTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             --------CCc-ccCCCC-CCcEEECCCCCCCCCCCcHHHhcC--------CCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence                    233 455555 6666666666666443 5555543        4566666666666644331   2334566


Q ss_pred             Cceee
Q 039577          269 LISLN  273 (282)
Q Consensus       269 L~~l~  273 (282)
                      |+.|+
T Consensus       562 L~~L~  566 (567)
T 1dce_A          562 VSSIL  566 (567)
T ss_dssp             CSEEE
T ss_pred             cCccC
Confidence            66665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=7.5e-14  Score=107.11  Aligned_cols=126  Identities=25%  Similarity=0.371  Sum_probs=92.4

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF   92 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   92 (282)
                      +.++++++.++ .+|..+.  ++|++|++++|.+. .+|..+..+++|+.|++++|.+. .++...|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence            56888888775 5665443  58888888888887 57777888888888888888886 55554778888888888888


Q ss_pred             CeecccCCcCCcCCCCceEEEecCCCCCCCCCCc-cccCCCCCcEEEecCcccc
Q 039577           93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS-VIFNSSNIQVIILYGNHLS  145 (282)
Q Consensus        93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  145 (282)
                      |.+....+..+..+++|++|++++|.++.  ++. .+..+++|+.|++.+|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCe--eChhhhhcCccccEEEeCCCCee
Confidence            88886555567788888888888887732  333 3555666666666666553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=7.9e-14  Score=106.91  Aligned_cols=110  Identities=27%  Similarity=0.375  Sum_probs=61.7

Q ss_pred             CccEEEcccCeecccCCc-CCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEE
Q 039577           84 MLRRLSFSFNKIRGWIPQ-KIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLF  161 (282)
Q Consensus        84 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~  161 (282)
                      ++++|++++|.+....+. .+..+++|++|++++|.+ ....|..+..+++|++|++++|.+....+..+ .+++|+.|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            444555554444422121 144455555555555554 22233444555555555555555554444444 567777777


Q ss_pred             eecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577          162 LWQNNLCGIVPDSICNASEVTILELSKNLFSCL  194 (282)
Q Consensus       162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  194 (282)
                      +++|.+++..|..+..+++|++|++++|.+.+.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            777777766566667777777777777777643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.2e-14  Score=106.89  Aligned_cols=109  Identities=17%  Similarity=0.154  Sum_probs=58.7

Q ss_pred             CCccEEEecCCcce-eeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEE
Q 039577           34 SFLVSLTSVAKSFY-GTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL  112 (282)
Q Consensus        34 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  112 (282)
                      ++|+.|++++|.+. +.+|..+..+++|+.|++++|.+. .+ . .+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            56667777776665 455655566666666666666665 22 2 45556666666666666554344444445566666


Q ss_pred             EecCCCCCCCCCCccccCCCCCcEEEecCcccc
Q 039577          113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLS  145 (282)
Q Consensus       113 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  145 (282)
                      ++++|.++....+..+..+++|++|++++|.++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            666655522001133344444444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=2.3e-15  Score=137.74  Aligned_cols=183  Identities=22%  Similarity=0.240  Sum_probs=106.3

Q ss_pred             CCccEEEecCCcceeeCCccccCCCCCcEEEcC-----CCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCC
Q 039577           34 SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLS-----SGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE  108 (282)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  108 (282)
                      ++++.|++..+.+.. .+..+.....|+.+.+.     .|.+.  ++...+..++.|+.|++++|.+. .++..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            567777887776654 33333333333333322     23332  33336778888999999888887 67777778888


Q ss_pred             ceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEecc
Q 039577          109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELS  187 (282)
Q Consensus       109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  187 (282)
                      |++|++++|.++  .+|..+..+++|++|++++|.++ .++..+ .+++|+.|++++|.++ .+|..+..+++|++|+++
T Consensus       249 L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          249 LTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            999999888885  47777888888999999988888 445555 7888899999988886 788888888889999999


Q ss_pred             CcccceecCCCCCCCCCcccccccccceEEeecccceecCCccc
Q 039577          188 KNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGF  231 (282)
Q Consensus       188 ~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  231 (282)
                      +|.+++.+|.       .+.........+++++|.+++.+|..+
T Consensus       325 ~N~l~~~~p~-------~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          325 GNPLEKQFLK-------ILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             TSCCCSHHHH-------HHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             CCccCCCChH-------HHhhcchhhhHHhhccCcccCcCcccc
Confidence            9888754332       343332133446788888887777644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=3.3e-13  Score=102.04  Aligned_cols=127  Identities=26%  Similarity=0.259  Sum_probs=77.3

Q ss_pred             eEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577           12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS   91 (282)
Q Consensus        12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   91 (282)
                      .+.++++++.+. .+|..+  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence            456777777664 345433  257777888777776443444567777777777777775 4554356677777777777


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCCCCCCCCc-cccCCCCCcEEEecCccc
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS-VIFNSSNIQVIILYGNHL  144 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  144 (282)
                      +|.+.+..+..+..+++|++|++++|.++.  ++. .+..+++|++|++++|.+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceE--eCHHHhcCCcccCEEEecCCCe
Confidence            777664333345666777777777766632  332 234445555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=4.8e-13  Score=101.12  Aligned_cols=110  Identities=20%  Similarity=0.224  Sum_probs=94.1

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      +.++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEE
Confidence            578999999999998665667789999999999999998554555789999999999999997 5665478899999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCC
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  119 (282)
                      ++++|.+....+..+..+++|++|++++|.+
T Consensus       106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            9999999854334467899999999999988

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=6.5e-13  Score=101.84  Aligned_cols=125  Identities=22%  Similarity=0.273  Sum_probs=60.8

Q ss_pred             cEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecC
Q 039577           37 VSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG  116 (282)
Q Consensus        37 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  116 (282)
                      ++++++++.+. .+|..+.  ++|+.|++++|.+. .+|. .+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            34555555554 3444332  45666666666654 4553 555556666666666655543334455555555555555


Q ss_pred             CCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577          117 NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus       117 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      |.++ ...+..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+
T Consensus        88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           88 NRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            5552 2222234444444444444444443333222 344444444444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=8.5e-14  Score=105.22  Aligned_cols=131  Identities=21%  Similarity=0.172  Sum_probs=77.4

Q ss_pred             ccCCCCccEEEecCCcceeeCCccccCCC-CCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCC-cCCC
Q 039577           30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQ-RLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKI-GNLT  107 (282)
Q Consensus        30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~  107 (282)
                      +..+++|+.|++++|.+. .++. +..+. +|+.|++++|.+.+ + . .+..+++|++|++++|.+.. ++..+ ..++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~-~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-D-GFPLLRRLKTLLVNNNRICR-IGEGLDQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-C-CCCCCSSCCEEECCSSCCCE-ECSCHHHHCT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-c-ccccCCCCCEEECCCCcccc-cCcchhhcCC
Confidence            445566666666666665 3333 33333 66666666666652 3 2 45666667777776666663 34333 5666


Q ss_pred             CceEEEecCCCCCCCCCCc--cccCCCCCcEEEecCccccccCCC---Cc-CCCCccEEEeecCcce
Q 039577          108 ELVELYLDGNNLQAGLLPS--VIFNSSNIQVIILYGNHLSGHLRS---SI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~~-~~~~L~~L~l~~~~~~  168 (282)
                      +|++|++++|.++.  +|.  .+..+++|+.|++++|.+...+..   .+ .+++|+.|+++.|...
T Consensus        89 ~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           89 DLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777766632  443  455666777777777766533321   13 5677777777776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=2.3e-13  Score=113.19  Aligned_cols=239  Identities=14%  Similarity=0.099  Sum_probs=140.4

Q ss_pred             CCceEEEEcCCCccc--cCCCccccCCCCccEEEecCCcceeeCCccccC--------CCCCcEEEcCCCcccccCCCCc
Q 039577            9 HRRVTALSLPNLTLG--GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQ--------LQRLRIVDLSSGIIPGSLPDDT   78 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~~~~~~~~~~   78 (282)
                      .+++++|+|++|.+.  .....   .++.++.+.+..+.+.   +..+..        |++|+.+++.. .+. .++...
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred             hccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence            367889999998876  21111   2223444444444221   233445        88888888888 665 666667


Q ss_pred             cCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCC--C-CCCCCccccCCCCCc--------------------
Q 039577           79 SGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL--Q-AGLLPSVIFNSSNIQ--------------------  135 (282)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~-~~~~~~~~~~~~~L~--------------------  135 (282)
                      |..+++|+.+++..|.+....+..|....++..+.......  . ...-...+.+...|+                    
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~  199 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL  199 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence            88888888888888776644445566666666665544210  0 000111222333333                    


Q ss_pred             ------EEEecCccccccCCCCc--CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccc
Q 039577          136 ------VIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIG  207 (282)
Q Consensus       136 ------~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  207 (282)
                            .+.+.+.-.. .....+  .+++|+.+++++|.++.--...+..+.+|+++++.+| +.. +++      ..+.
T Consensus       200 ~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~------~aF~  270 (329)
T 3sb4_A          200 QPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQ------RVFS  270 (329)
T ss_dssp             CGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECT------TTTT
T ss_pred             CccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehH------HHhh
Confidence                  3333222110 000001  2678888888888777333445777888888888877 432 221      1344


Q ss_pred             ccccccc-eEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeec
Q 039577          208 NLSTSLE-NFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL  274 (282)
Q Consensus       208 ~~~~~L~-~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l  274 (282)
                      .+. +|+ ++++.+ .++...+..|..|        ++|+.+++..|.++...+..|.++++|+.+..
T Consensus       271 ~~~-~L~~~l~l~~-~l~~I~~~aF~~c--------~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          271 NCG-RLAGTLELPA-SVTAIEFGAFMGC--------DNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCT-TCCEEEEECT-TCCEECTTTTTTC--------TTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCh-hccEEEEEcc-cceEEchhhhhCC--------ccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            555 788 888877 5554445566665        56778888888888666678999999988764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=5.2e-13  Score=100.84  Aligned_cols=132  Identities=20%  Similarity=0.238  Sum_probs=79.5

Q ss_pred             cccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCC-ccccCC
Q 039577           53 ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLP-SVIFNS  131 (282)
Q Consensus        53 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~  131 (282)
                      .+.++.+|+.|++++|.+. .++. .....++|++|++++|.+.+ + ..+..+++|++|++++|.++.  +| ..+..+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l   87 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR--IGEGLDQAL   87 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE--ECSCHHHHC
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc--cCcchhhcC
Confidence            3556788888888888876 5543 33333488888888888774 3 566777788888888777732  33 223556


Q ss_pred             CCCcEEEecCccccccCC-CCc-CCCCccEEEeecCcceeeccch----hhCCCCCcEEeccCccc
Q 039577          132 SNIQVIILYGNHLSGHLR-SSI-YLPNLENLFLWQNNLCGIVPDS----ICNASEVTILELSKNLF  191 (282)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~  191 (282)
                      ++|++|++++|.+..... ..+ .+++|+.|++++|.++ ..|..    +..+++|++|+++.|..
T Consensus        88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            666666666666543222 122 4555666666665554 44432    44555555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=3e-15  Score=115.51  Aligned_cols=135  Identities=20%  Similarity=0.228  Sum_probs=90.5

Q ss_pred             CCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCC
Q 039577          124 LPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVF  202 (282)
Q Consensus       124 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  202 (282)
                      +|..+..+++|++|++++|.+... + .+ .+++|+.|++++|.++ .+|..+..+++|++|++++|.+++        +
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~--------l  108 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--------L  108 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC--------H
T ss_pred             hhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc--------C
Confidence            333566677777777777776653 3 34 6777888888888776 667666666788888888887762        3


Q ss_pred             CCcccccccccceEEeecccceecCC-ccccCCccCccccccccceeeccCCeeeeecch----------hhhccCCCce
Q 039577          203 PNSIGNLSTSLENFYASSCQLSGGIP-VGFGNLSNMIKCNLESLFGLLLGGDALEGQIPT----------CLANLTSLIS  271 (282)
Q Consensus       203 ~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~----------~~~~l~~L~~  271 (282)
                      | .+..++ +|+.|++++|.+++..+ ..+..        +++|+.|++++|.+++..|.          .+..+++|+.
T Consensus       109 ~-~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~--------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          109 S-GIEKLV-NLRVLYMSNNKITNWGEIDKLAA--------LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             H-HHHHHH-HSSEEEESEEECCCHHHHHHHTT--------TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             C-ccccCC-CCCEEECCCCcCCchhHHHHHhc--------CCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence            3 455666 88888888887763211 12333        26678888888888765443          3778888888


Q ss_pred             eeccCccCCC
Q 039577          272 LNLRSIRLNS  281 (282)
Q Consensus       272 l~l~~n~~~~  281 (282)
                      +|  +|.++.
T Consensus       179 Ld--~~~i~~  186 (198)
T 1ds9_A          179 LD--GMPVDV  186 (198)
T ss_dssp             EC--CGGGTT
T ss_pred             EC--CcccCH
Confidence            87  666653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.41  E-value=4e-13  Score=111.77  Aligned_cols=221  Identities=13%  Similarity=-0.010  Sum_probs=130.4

Q ss_pred             CCCccEEEecCCcce--eeCCccccCCCCCcEEEcCCCcccccCCCCccCC--------CCCccEEEcccCeecccCCcC
Q 039577           33 LSFLVSLTSVAKSFY--GTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGD--------CIMLRRLSFSFNKIRGWIPQK  102 (282)
Q Consensus        33 l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~  102 (282)
                      +++|++|+|++|.+.  .....   .++.++.+.+..+    .+|...|..        +++|+.+++.. .+.......
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            566777777776665  21111   1122334444443    344446777        99999999988 666444556


Q ss_pred             CcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccc----cccCCCCc-CCCCcc-------------------
Q 039577          103 IGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL----SGHLRSSI-YLPNLE-------------------  158 (282)
Q Consensus       103 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~-~~~~L~-------------------  158 (282)
                      |..+++|+.+++..|.++. ..+..|....++..+.......    .......+ .+..|+                   
T Consensus       120 F~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~  198 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG  198 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred             hhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence            8899999999999998732 2334455555555555443211    11111112 333443                   


Q ss_pred             -------EEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccc
Q 039577          159 -------NLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGF  231 (282)
Q Consensus       159 -------~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  231 (282)
                             .+.+.++............+++|+++++.+|.++....       ..+..+. +|+++++.+| +....+..|
T Consensus       199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~-------~aF~~~~-~L~~l~l~~n-i~~I~~~aF  269 (329)
T 3sb4_A          199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD-------FTFAQKK-YLLKIKLPHN-LKTIGQRVF  269 (329)
T ss_dssp             CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT-------TTTTTCT-TCCEEECCTT-CCEECTTTT
T ss_pred             cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH-------hhhhCCC-CCCEEECCcc-cceehHHHh
Confidence                   22222211110001111236899999999988773322       1355565 8999999987 664445567


Q ss_pred             cCCccCccccccccc-eeeccCCeeeeecchhhhccCCCceeeccCccCC
Q 039577          232 GNLSNMIKCNLESLF-GLLLGGDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       232 ~~l~~l~~l~l~~l~-~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      ..+.+        |+ .+++.+ .++...+..|.+|++|+.+++++|.++
T Consensus       270 ~~~~~--------L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          270 SNCGR--------LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTCTT--------CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             hCChh--------ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            77654        55 556655 555444688999999999999988775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=2.4e-12  Score=96.61  Aligned_cols=105  Identities=20%  Similarity=0.239  Sum_probs=84.6

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF   90 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   90 (282)
                      +.++++++++.++ .+|..+.  ++|++|++++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence            4568899998886 4676553  78999999999998766777888999999999999987 666656788899999999


Q ss_pred             ccCeecccCCcCCcCCCCceEEEecCCCC
Q 039577           91 SFNKIRGWIPQKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  119 (282)
                      ++|.+....+..+..+++|++|++++|.+
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            99988854344578888899999988877

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=2.6e-15  Score=115.87  Aligned_cols=104  Identities=23%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             CCccEEEecCCcceeeCCc------cccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCC
Q 039577           34 SFLVSLTSVAKSFYGTLPN------ELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLT  107 (282)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  107 (282)
                      ..++.++++.+.+.+..|.      .+..+++|+.|++++|.+. .+|  .+..+++|++|++++|.+. .+|..+..++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            3444444444444444333      4445555555555555554 233  3444555555555555544 3343333344


Q ss_pred             CceEEEecCCCCCCCCCCccccCCCCCcEEEecCccc
Q 039577          108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHL  144 (282)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  144 (282)
                      +|++|++++|.++.  ++ .+..+++|+.|++++|.+
T Consensus        94 ~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i  127 (198)
T 1ds9_A           94 TLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             HCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEEC
T ss_pred             cCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcC
Confidence            55555555554422  22 233344444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=7.6e-12  Score=94.20  Aligned_cols=102  Identities=22%  Similarity=0.302  Sum_probs=81.2

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF   92 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   92 (282)
                      +.++++++.+. .+|..+.  ++|++|++++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence            67888888874 6776554  78899999999888766777888889999999998886 56665677888888888888


Q ss_pred             CeecccCCc-CCcCCCCceEEEecCCCC
Q 039577           93 NKIRGWIPQ-KIGNLTELVELYLDGNNL  119 (282)
Q Consensus        93 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~  119 (282)
                      |.+.. ++. .+..+++|++|++++|.+
T Consensus        91 N~l~~-l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           91 NHLKS-IPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SCCCC-CCTTTTTTCTTCSEEECCSSCB
T ss_pred             Cccce-eCHHHhccccCCCEEEeCCCCc
Confidence            88884 444 477888888888888877

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=9.4e-12  Score=93.33  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=74.4

Q ss_pred             CcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccccccccc
Q 039577          134 IQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSL  213 (282)
Q Consensus       134 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L  213 (282)
                      .+.++++++.++..+ ..+ .++++.|++++|.+++..|..+..+++|++|++++|.+++..+       ..+..++ +|
T Consensus        11 ~~~l~~s~n~l~~ip-~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------~~f~~l~-~L   80 (170)
T 3g39_A           11 GTTVDCSGKSLASVP-TGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-------GVFDKLT-QL   80 (170)
T ss_dssp             TTEEECTTSCCSSCC-SCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-------TTTTTCT-TC
T ss_pred             CCEEEeCCCCcCccC-ccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-------hhccCCC-CC
Confidence            467888888777543 333 4778888888888875556667788888888888888873322       2345566 88


Q ss_pred             ceEEeecccceecCCccccCCccCccccccccceeeccCCeeeee
Q 039577          214 ENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQ  258 (282)
Q Consensus       214 ~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~  258 (282)
                      ++|++++|.+++..+..+..+        ++|+.|++++|.+...
T Consensus        81 ~~L~L~~N~l~~~~~~~~~~l--------~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           81 TQLSLNDNQLKSIPRGAFDNL--------KSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CEEECCSSCCCCCCTTTTTTC--------TTCCEEECCSSCBCTT
T ss_pred             CEEECCCCccCEeCHHHhcCC--------CCCCEEEeCCCCCCCC
Confidence            888888888874444445554        5677788888877643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.24  E-value=1.6e-09  Score=92.29  Aligned_cols=153  Identities=14%  Similarity=0.157  Sum_probs=78.1

Q ss_pred             cccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCC
Q 039577           29 HIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTE  108 (282)
Q Consensus        29 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  108 (282)
                      +|.++ +|+.+.+..+ +...-...+.+ .+|+.+.+.. .+. .+....|..+.+|+.+++..|.+.. ++...-....
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~  204 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYAG  204 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCC
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceE-echhhEeecc
Confidence            44443 5777766544 33222233334 3566766665 333 4454466667777777776666553 3333222466


Q ss_pred             ceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577          109 LVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK  188 (282)
Q Consensus       109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  188 (282)
                      |+.+.+..+ ++. .-...|..+.+|+.+.+..+ +.......+.-.+|+.+.+.++ ++.--..++..+++|+.+.+.+
T Consensus       205 L~~l~lp~~-l~~-I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          205 IEEVLLPVT-LKE-IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-VTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             CSEEECCTT-CCE-ECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-CCEECTTTTTTCTTCCEEEEES
T ss_pred             cCEEEeCCc-hhe-ehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCC
Confidence            666666543 311 12234555566666666543 2333333332355666666433 2212234455566666666665


Q ss_pred             ccc
Q 039577          189 NLF  191 (282)
Q Consensus       189 ~~~  191 (282)
                      +.+
T Consensus       281 ~~~  283 (401)
T 4fdw_A          281 STF  283 (401)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.24  E-value=1.1e-09  Score=93.25  Aligned_cols=238  Identities=12%  Similarity=0.132  Sum_probs=157.2

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF   90 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   90 (282)
                      +++++.+..+ ++..-..+|.++ +|+.+.+.. .+...-+..+.+|.+|+.+++..|.+. .++...|. ..+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEEC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEe
Confidence            5777777665 443334456664 799999875 454444567888999999999998886 77765665 589999998


Q ss_pred             ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCC-ccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcce
Q 039577           91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLP-SVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLC  168 (282)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  168 (282)
                      ..+ +.......|..+++|+.+++..+ ++.  ++ ..|.. .+|+.+.+.. .+.......+ .+.+|+.+.+.++...
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~--I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VST--IGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCE--ECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccC--cccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCcccc
Confidence            754 44334556788899999999875 322  33 23444 7899998844 3444555556 7889999999887653


Q ss_pred             -----eeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccccc
Q 039577          169 -----GIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLE  243 (282)
Q Consensus       169 -----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~  243 (282)
                           .--...+..+++|+.+.+..+ +... ++      ..+..+. +|+.+.+..+ ++......|..+         
T Consensus       285 ~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I-~~------~aF~~c~-~L~~l~lp~~-l~~I~~~aF~~~---------  345 (401)
T 4fdw_A          285 DDPEAMIHPYCLEGCPKLARFEIPES-IRIL-GQ------GLLGGNR-KVTQLTIPAN-VTQINFSAFNNT---------  345 (401)
T ss_dssp             CCTTCEECTTTTTTCTTCCEECCCTT-CCEE-CT------TTTTTCC-SCCEEEECTT-CCEECTTSSSSS---------
T ss_pred             CCcccEECHHHhhCCccCCeEEeCCc-eEEE-hh------hhhcCCC-CccEEEECcc-ccEEcHHhCCCC---------
Confidence                 133456778889999988743 4321 11      1344455 8999998544 543334455553         


Q ss_pred             ccceeeccCCeeeeecchhhhccC-CCceeeccCcc
Q 039577          244 SLFGLLLGGDALEGQIPTCLANLT-SLISLNLRSIR  278 (282)
Q Consensus       244 ~l~~L~l~~n~~~~~~~~~~~~l~-~L~~l~l~~n~  278 (282)
                      +|+.+++.+|.........|..++ +++.+.+..+.
T Consensus       346 ~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          346 GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            566777777766644445566664 67777776554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=9e-14  Score=117.39  Aligned_cols=177  Identities=16%  Similarity=0.080  Sum_probs=106.3

Q ss_pred             CCCccEEEcccCeecccCCcC----Cc-CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc----
Q 039577           82 CIMLRRLSFSFNKIRGWIPQK----IG-NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI----  152 (282)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----  152 (282)
                      .+.|++|++++|.+.......    +. ..+.|++|++++|.++..........+.+|+.|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            457888888888876422221    22 236788888888877321122222334678888888887754322222    


Q ss_pred             --CCCCccEEEeecCccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceec
Q 039577          153 --YLPNLENLFLWQNNLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGG  226 (282)
Q Consensus       153 --~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~  226 (282)
                        ..+.|++|++++|.++.    .++..+...++|++|++++|.+++...   ..++..+...+ +|++|++++|.++..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~---~~L~~~L~~~~-~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL---ELLAAQLDRNR-QLQELNVAYNGAGDT  226 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH---HHHHHHGGGCS-CCCEEECCSSCCCHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH---HHHHHHHhcCC-CcCeEECCCCCCCHH
Confidence              24678888888887763    234445667788888888888764321   12333445555 788888888877643


Q ss_pred             CCccccCCccCccccccccceeeccCCeeeeecchhhhcc
Q 039577          227 IPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANL  266 (282)
Q Consensus       227 ~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l  266 (282)
                      ....+...  +.  ..++|++|++++|.+++.....+..+
T Consensus       227 g~~~l~~~--L~--~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          227 AALALARA--AR--EHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             HHHHHHHH--HH--HCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             HHHHHHHH--HH--hCCCCCEEeccCCCCCHHHHHHHHHH
Confidence            22222110  00  12567888888888876655555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=1.8e-10  Score=86.63  Aligned_cols=102  Identities=24%  Similarity=0.337  Sum_probs=53.8

Q ss_pred             cEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCc-CCcCCCCceEEEec
Q 039577           37 VSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQ-KIGNLTELVELYLD  115 (282)
Q Consensus        37 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~  115 (282)
                      +.++++++.+. .+|..+.  ++|+.|++++|.+. .++...+..+++|++|++++|.+.. ++. .+..+++|++|+++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECC
Confidence            45666666553 4554442  56666666666665 3332255566666666666666553 332 34555666666666


Q ss_pred             CCCCCCCCCCc-cccCCCCCcEEEecCcccc
Q 039577          116 GNNLQAGLLPS-VIFNSSNIQVIILYGNHLS  145 (282)
Q Consensus       116 ~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  145 (282)
                      +|.++.  ++. .+..+++|++|++.+|.+.
T Consensus        90 ~N~l~~--l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKS--IPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCC--CCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccce--eCHHHhccccCCCEEEeCCCCcc
Confidence            665522  222 2444555555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=1e-13  Score=117.01  Aligned_cols=193  Identities=14%  Similarity=0.064  Sum_probs=114.5

Q ss_pred             CCCCcEEEcCCCcccccCCCC---ccC-CCCCccEEEcccCeecccCCcCC-cCCCCceEEEecCCCCCCCCC---Cccc
Q 039577           57 LQRLRIVDLSSGIIPGSLPDD---TSG-DCIMLRRLSFSFNKIRGWIPQKI-GNLTELVELYLDGNNLQAGLL---PSVI  128 (282)
Q Consensus        57 l~~L~~L~l~~~~~~~~~~~~---~~~-~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~  128 (282)
                      ++.|+.+++++|.+.......   .+. ..++|++|++++|.+.......+ ..+++|++|++++|.++....   ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467889999998875321110   112 23689999999888764322222 235678999999988732111   1111


Q ss_pred             -cCCCCCcEEEecCccccccCC----CCc-CCCCccEEEeecCcceee----ccchhhCCCCCcEEeccCcccceecCCC
Q 039577          129 -FNSSNIQVIILYGNHLSGHLR----SSI-YLPNLENLFLWQNNLCGI----VPDSICNASEVTILELSKNLFSCLIPNT  198 (282)
Q Consensus       129 -~~~~~L~~L~l~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~  198 (282)
                       ...++|++|++++|.++....    ..+ ..++|++|++++|.+...    ++..+...++|++|++++|.+++...  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~--  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA--  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--
Confidence             235779999999988764221    122 467899999999987632    34456667789999999998874321  


Q ss_pred             CCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceee--ccCCeee
Q 039577          199 SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLL--LGGDALE  256 (282)
Q Consensus       199 ~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~--l~~n~~~  256 (282)
                       ..++..+...+ +|++|++++|.++......+..+.....   ..++.+.  +..+.+.
T Consensus       229 -~~l~~~L~~~~-~L~~L~Ls~N~i~~~g~~~L~~~~~~~~---~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          229 -LALARAAREHP-SLELLHLYFNELSSEGRQVLRDLGGAAE---GGARVVVSLTEGTAVS  283 (372)
T ss_dssp             -HHHHHHHHHCS-SCCEEECTTSSCCHHHHHHHHHCC---------CEEECCCC----CH
T ss_pred             -HHHHHHHHhCC-CCCEEeccCCCCCHHHHHHHHHHhcCCC---ccchhhHhhhcCCccC
Confidence             13334454556 8999999999887544444433222110   1255565  5555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.11  E-value=6.1e-11  Score=99.42  Aligned_cols=144  Identities=15%  Similarity=0.091  Sum_probs=68.5

Q ss_pred             cccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhh--CCCCCcEEeccCc--ccceecCCCCCCC
Q 039577          127 VIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSIC--NASEVTILELSKN--LFSCLIPNTSGVF  202 (282)
Q Consensus       127 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~~~~~~~~l  202 (282)
                      .+..+++|+.|.+.++.-. ..+. +..++|+.|++..+.+.......+.  .+++|++|++..+  ...+..  ....+
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l  242 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF  242 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHHH
Confidence            3344566666666655211 1111 2356666666666655422222222  4566666666421  111100  00011


Q ss_pred             CCcc--cccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeec----chhhhccCCCceeeccC
Q 039577          203 PNSI--GNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQI----PTCLANLTSLISLNLRS  276 (282)
Q Consensus       203 ~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~----~~~~~~l~~L~~l~l~~  276 (282)
                      ...+  ...| +|+.|++.+|.++...+..+...+.     +++|++|+++.|.+.+..    +..+..+++|++|++++
T Consensus       243 ~~~l~~~~~p-~Lr~L~L~~~~i~~~~~~~la~a~~-----~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          243 RPLFSKDRFP-NLKWLGIVDAEEQNVVVEMFLESDI-----LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             GGGSCTTTCT-TCCEEEEESCTTHHHHHHHHHHCSS-----GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             HHHHhcCCCC-CcCEEeCCCCCCchHHHHHHHhCcc-----CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            1111  1234 6777777666655332222222111     356677777777666542    23334566777777777


Q ss_pred             ccCC
Q 039577          277 IRLN  280 (282)
Q Consensus       277 n~~~  280 (282)
                      |.|+
T Consensus       317 n~i~  320 (362)
T 2ra8_A          317 NYLS  320 (362)
T ss_dssp             BBCC
T ss_pred             CcCC
Confidence            7665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=8.3e-10  Score=92.31  Aligned_cols=103  Identities=22%  Similarity=0.188  Sum_probs=85.1

Q ss_pred             EEEcCCC-ccccCCCccccCCCCccEEEecC-CcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577           14 ALSLPNL-TLGGTIPPHIGNLSFLVSLTSVA-KSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS   91 (282)
Q Consensus        14 ~l~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   91 (282)
                      .++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..+..+++|+.|++++|.+.+ ++...|..+++|++|+++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCC
Confidence            4688887 776 5888 99999999999996 99987666788999999999999999984 444488999999999999


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCCC
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNLQ  120 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  120 (282)
                      +|.+.. +|..+.....|+.|++.+|.+.
T Consensus        89 ~N~l~~-~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALES-LSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCccce-eCHHHcccCCceEEEeeCCCcc
Confidence            999995 5554333334999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.99  E-value=8.5e-10  Score=92.25  Aligned_cols=103  Identities=18%  Similarity=0.159  Sum_probs=74.3

Q ss_pred             EEEecCc-cccccCCCCc-CCCCccEEEeec-CcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccc
Q 039577          136 VIILYGN-HLSGHLRSSI-YLPNLENLFLWQ-NNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTS  212 (282)
Q Consensus       136 ~L~l~~~-~~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~  212 (282)
                      .++.+++ .++.. |. + .+.+|+.|++++ |.+++..+..+..+++|++|++++|.+++..+.       .+..++ +
T Consensus        12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------~~~~l~-~   81 (347)
T 2ifg_A           12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-------AFHFTP-R   81 (347)
T ss_dssp             CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-------GGGSCS-C
T ss_pred             EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-------HhcCCc-C
Confidence            4566666 66654 34 5 778899999986 888755556788889999999999988855433       566677 8


Q ss_pred             cceEEeecccceecCCccccCCccCccccccccceeeccCCeeee
Q 039577          213 LENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEG  257 (282)
Q Consensus       213 L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~  257 (282)
                      |+.|+|++|.+++..+..+..+         +|+.|++.+|.+..
T Consensus        82 L~~L~l~~N~l~~~~~~~~~~~---------~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           82 LSRLNLSFNALESLSWKTVQGL---------SLQELVLSGNPLHC  117 (347)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSC---------CCCEEECCSSCCCC
T ss_pred             CCEEeCCCCccceeCHHHcccC---------CceEEEeeCCCccC
Confidence            9999999999884333333332         27888888888873

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.79  E-value=6.5e-07  Score=76.07  Aligned_cols=105  Identities=15%  Similarity=0.065  Sum_probs=55.1

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc------------cc------
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI------------IP------   71 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------~~------   71 (282)
                      ..|+++.+..+ ++..-..+|.++++|+.+++.++ +...-...+..|.+|+.+.+..+-            ..      
T Consensus        71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~  148 (394)
T 4fs7_A           71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE  148 (394)
T ss_dssp             TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred             CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence            35666666543 43323446667777777777543 221222344455555554443210            00      


Q ss_pred             --ccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCC
Q 039577           72 --GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGN  117 (282)
Q Consensus        72 --~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  117 (282)
                        ..+....|..+.+|+.+.+..+... .....|..+.+|+.+.+..+
T Consensus       149 ~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          149 GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT
T ss_pred             cccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC
Confidence              0112225667788888888654322 22344666777777777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=2e-09  Score=90.28  Aligned_cols=139  Identities=14%  Similarity=0.149  Sum_probs=76.8

Q ss_pred             CCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccc--cCCCCCcEEEecCc--ccccc-----CCC
Q 039577           80 GDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVI--FNSSNIQVIILYGN--HLSGH-----LRS  150 (282)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~--~~~~~-----~~~  150 (282)
                      ..+|+|+.|.+.++.-. .++. + .+++|++|++..+.++...+ ..+  ..+++|++|+++.+  .....     ...
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l-~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV-EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH-HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH-HHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            44566666666554211 1222 2 25666666666555421111 111  14566666665421  10000     001


Q ss_pred             Cc---CCCCccEEEeecCcceeeccchhh---CCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577          151 SI---YLPNLENLFLWQNNLCGIVPDSIC---NASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS  224 (282)
Q Consensus       151 ~~---~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~  224 (282)
                      .+   .+++|+.|++.+|.+....+..+.   .+++|++|+++.|.+.+....   .++..+..++ +|++|++++|.++
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~---~L~~~L~~l~-~L~~L~L~~n~i~  320 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR---LLLDHVDKIK-HLKFINMKYNYLS  320 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH---HHHTTHHHHT-TCSEEECCSBBCC
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH---HHHhhcccCC-cceEEECCCCcCC
Confidence            11   368899999998887643333332   467899999999988754221   3333445566 8999999999877


Q ss_pred             ec
Q 039577          225 GG  226 (282)
Q Consensus       225 ~~  226 (282)
                      ..
T Consensus       321 d~  322 (362)
T 2ra8_A          321 DE  322 (362)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.57  E-value=4.4e-09  Score=79.78  Aligned_cols=119  Identities=14%  Similarity=0.136  Sum_probs=66.4

Q ss_pred             CCCccEEEeecC-ccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577          154 LPNLENLFLWQN-NLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP  228 (282)
Q Consensus       154 ~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~  228 (282)
                      .+.|++|++++| .+..    .+...+...++|++|++++|.+.+...   ..+...+...+ +|++|++++|.++....
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~---~~l~~~L~~n~-~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA---FALAEMLKVNN-TLKSLNVESNFISGSGI  110 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH---HHHHHHHHHCS-SCCEEECCSSCCCHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH---HHHHHHHHhCC-CcCEEECcCCcCCHHHH
Confidence            556666777666 5542    223344556677777777777653211   12223334444 67777777777663321


Q ss_pred             ccccCCccCccccccccceeec--cCCeeeeec----chhhhccCCCceeeccCccCC
Q 039577          229 VGFGNLSNMIKCNLESLFGLLL--GGDALEGQI----PTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       229 ~~~~~l~~l~~l~l~~l~~L~l--~~n~~~~~~----~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      ..+...  ++.  .++|++|++  ++|.+++..    ...+...++|++|++++|.|+
T Consensus       111 ~~l~~~--L~~--n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEA--LQS--NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHG--GGG--CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHH--HHh--CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            111110  000  245777777  677777553    234555677888888887764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.57  E-value=1.5e-05  Score=67.59  Aligned_cols=101  Identities=10%  Similarity=0.059  Sum_probs=48.6

Q ss_pred             eEEEEcCCCccccCCCccccCCCCccEEEecCCc---ceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577           12 VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKS---FYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus        12 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      |+++.+..+ ++..-..+|.++.+|+.+.+..+.   +...-...+..|.+|+.+.+..+ ++ .+....+..+.+|+.+
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCCEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhcccccc
Confidence            555555543 332234466677777777776542   22212234445666665555443 11 3333345556666666


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecC
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDG  116 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~  116 (282)
                      .+...-.. .....+.....|+.+.+..
T Consensus       143 ~lp~~~~~-I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          143 TIPEGVTS-VADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             ECCTTCCE-ECTTTTTTCTTCCEEECCT
T ss_pred             cccceeee-ecccceecccccccccccc
Confidence            65432211 1222344445555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.41  E-value=1.1e-05  Score=68.51  Aligned_cols=110  Identities=9%  Similarity=0.045  Sum_probs=64.0

Q ss_pred             CccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCee-----------
Q 039577           27 PPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKI-----------   95 (282)
Q Consensus        27 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----------   95 (282)
                      ..+|.++.+|+.+.+..+ +...-..++.+|.+|+.+++..+ ++ .+....|..+.+|+.+.+..+-.           
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~  140 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeeccc
Confidence            346788999999998643 44333456778999999999764 33 45544666666666654432110           


Q ss_pred             ----------cccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecC
Q 039577           96 ----------RGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG  141 (282)
Q Consensus        96 ----------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  141 (282)
                                .......|..+.+|+.+.+..+.. . .-...+....+|+.+.+..
T Consensus       141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~-I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-T-LHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             CSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-E-ECTTTTTTCTTCCBCCCCT
T ss_pred             ccccccCccccccchhhhcccCCCcEEecCCccc-e-eccccccCCCCceEEEcCC
Confidence                      000122355567788877765432 1 1123345556666666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.29  E-value=9.5e-05  Score=62.62  Aligned_cols=108  Identities=10%  Similarity=0.085  Sum_probs=68.5

Q ss_pred             cccCCC-CccEEEecCCcceeeCCccccCCCCCcEEEcCCCc---ccccCCCCccCCCCCccEEEcccCeecccCCcCCc
Q 039577           29 HIGNLS-FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI---IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG  104 (282)
Q Consensus        29 ~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  104 (282)
                      +|.+++ .|+.+.+-.+ ++..-..++.+|.+|+.+.+..+.   ++ .+....|..+.+|+.+.+..+ +.......+.
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhh
Confidence            555664 5888888643 443345677889999999997653   43 455557788888888776543 3322344567


Q ss_pred             CCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecC
Q 039577          105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG  141 (282)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  141 (282)
                      .+.+|+.+.+..+.. . .-...+.....|+.+.+..
T Consensus       135 ~c~~L~~i~lp~~~~-~-I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          135 HCEELDTVTIPEGVT-S-VADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             TCTTCCEEECCTTCC-E-ECTTTTTTCTTCCEEECCT
T ss_pred             hhcccccccccceee-e-ecccceecccccccccccc
Confidence            788999999976432 1 1122345556666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.10  E-value=9.7e-08  Score=72.32  Aligned_cols=66  Identities=11%  Similarity=0.057  Sum_probs=29.2

Q ss_pred             CCccEEEeecCccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEe--ecccce
Q 039577          155 PNLENLFLWQNNLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYA--SSCQLS  224 (282)
Q Consensus       155 ~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l--~~n~~~  224 (282)
                      ++|++|++++|.+..    .+...+...++|++|++++|.+.+...   ..+...+...+ .|++|++  ++|.++
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~---~~l~~~L~~n~-~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI---LALVEALQSNT-SLIELRIDNQSQPLG  136 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH---HHHHHGGGGCS-SCCEEECCCCSSCCC
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH---HHHHHHHHhCC-CceEEEecCCCCCCC
Confidence            444555555554431    122233344555555555555543211   12222333333 5666666  555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.97  E-value=0.0017  Score=54.42  Aligned_cols=60  Identities=13%  Similarity=0.115  Sum_probs=34.3

Q ss_pred             cccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccC
Q 039577          207 GNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS  276 (282)
Q Consensus       207 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~  276 (282)
                      ..+. +|+++.+.++.++......|..+.+|+.+.++        .+ ++......|.+|.+|+++.+..
T Consensus       283 ~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp--------~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          283 SGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP--------TA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECC--------TT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccc-ccccccccccccceehhhhhcCCCCCCEEEcC--------cc-ccEEHHHHhhCCCCCCEEEECC
Confidence            3344 78888887766664444566666555444433        22 3322345677777777776643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.96  E-value=3e-06  Score=67.56  Aligned_cols=83  Identities=18%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             cCCCCccEEEecCCccee--eCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCc-------
Q 039577           31 GNLSFLVSLTSVAKSFYG--TLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQ-------  101 (282)
Q Consensus        31 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------  101 (282)
                      .++++|++|+|++|.+.+  .++..+..+++|+.|++++|.+.+.-.-..+..+ +|++|++.+|.+.+..+.       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            467899999999999876  4555566889999999999998642111123333 899999999988754442       


Q ss_pred             CCcCCCCceEEEe
Q 039577          102 KIGNLTELVELYL  114 (282)
Q Consensus       102 ~~~~l~~L~~L~l  114 (282)
                      .+..+++|+.||-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            2456788888864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.94  E-value=2.9e-06  Score=67.63  Aligned_cols=103  Identities=19%  Similarity=0.202  Sum_probs=69.9

Q ss_pred             CCCCccE--EEecCCcce---eeCCccccCCCCCcEEEcCCCcccc--cCCCCccCCCCCccEEEcccCeecccCCcCCc
Q 039577           32 NLSFLVS--LTSVAKSFY---GTLPNELWQLQRLRIVDLSSGIIPG--SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIG  104 (282)
Q Consensus        32 ~l~~L~~--L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  104 (282)
                      ..+.|..  +++..|...   ..++..-.++++|+.|++++|.+.+  .++. .+..+++|+.|++++|.+.+.  ..+.
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~  215 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELD  215 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGG
T ss_pred             CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhh
Confidence            3445555  566666322   1111112368899999999999974  3334 567899999999999998853  3344


Q ss_pred             CCC--CceEEEecCCCCCCCCCC-------ccccCCCCCcEEE
Q 039577          105 NLT--ELVELYLDGNNLQAGLLP-------SVIFNSSNIQVII  138 (282)
Q Consensus       105 ~l~--~L~~L~l~~~~~~~~~~~-------~~~~~~~~L~~L~  138 (282)
                      .+.  +|++|++.+|.+ ....|       ..+..+++|+.|+
T Consensus       216 ~l~~l~L~~L~L~~Npl-~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSL-CDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGTTSCCSEEECTTSTT-GGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hcccCCcceEEccCCcC-ccccCcchhHHHHHHHHCcccCeEC
Confidence            444  999999999998 33333       2356788888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.92  E-value=1.5e-06  Score=64.63  Aligned_cols=85  Identities=8%  Similarity=-0.013  Sum_probs=61.4

Q ss_pred             CCccEEEecCCcceeeCCccccCCCCCcEEEcCCCc-ccccCCCCccCCC----CCccEEEcccCe-ecccCCcCCcCCC
Q 039577           34 SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI-IPGSLPDDTSGDC----IMLRRLSFSFNK-IRGWIPQKIGNLT  107 (282)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~  107 (282)
                      .+|+.||+++|.++..--..+..|++|+.|++++|. +++..-. .+..+    ++|++|++++|. +++..-..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            479999999998876544556789999999999986 5432111 23332    479999999885 6644344566789


Q ss_pred             CceEEEecCCCC
Q 039577          108 ELVELYLDGNNL  119 (282)
Q Consensus       108 ~L~~L~l~~~~~  119 (282)
                      +|++|+++++.-
T Consensus       140 ~L~~L~L~~c~~  151 (176)
T 3e4g_A          140 NLKYLFLSDLPG  151 (176)
T ss_dssp             TCCEEEEESCTT
T ss_pred             CCCEEECCCCCC
Confidence            999999998863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=2.1e-06  Score=63.78  Aligned_cols=92  Identities=11%  Similarity=0.140  Sum_probs=61.6

Q ss_pred             CCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe-ecccCCcCCcCC----CCceEEEecCCC-CCCCC
Q 039577           50 LPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK-IRGWIPQKIGNL----TELVELYLDGNN-LQAGL  123 (282)
Q Consensus        50 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~  123 (282)
                      +|.....-.+|+.||++++.+++..-. .+..+++|++|++++|. +++..-..+..+    +.|++|++++|. ++...
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            454333456899999999887643222 46788999999999885 553322334443    369999999875 53222


Q ss_pred             CCccccCCCCCcEEEecCcc
Q 039577          124 LPSVIFNSSNIQVIILYGNH  143 (282)
Q Consensus       124 ~~~~~~~~~~L~~L~l~~~~  143 (282)
                      + ..+.++++|++|++++|.
T Consensus       132 l-~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 I-IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             H-HHGGGCTTCCEEEEESCT
T ss_pred             H-HHHhcCCCCCEEECCCCC
Confidence            2 235678899999999875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.56  E-value=0.022  Score=47.56  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=27.5

Q ss_pred             ccccceeeccCCeeeeecchhhhccCCCceeeccCc
Q 039577          242 LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSI  277 (282)
Q Consensus       242 l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n  277 (282)
                      +.+|+.+.+.++.++......|.+|.+|+.+++..+
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            356777888777777555678999999999998653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.46  E-value=1.2e-05  Score=60.88  Aligned_cols=118  Identities=13%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             CCCccEEEeecC-ccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577          154 LPNLENLFLWQN-NLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP  228 (282)
Q Consensus       154 ~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~  228 (282)
                      -+.|++|+++++ .+..    .+...+.....|+.|++++|.+.+....   .+...+.... .|++|+|+.|.++....
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~---alA~aL~~N~-tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR---GLIELIETSP-SLRVLNVESNFLTPELL  115 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT---THHHHHHHCS-SCCEEECCSSBCCHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH---HHHHHHhcCC-ccCeEecCCCcCCHHHH
Confidence            345666666654 4431    2344455566777777777777644222   3333444444 77777777777663322


Q ss_pred             ccccCCccCccccccccceeeccCC---eeeee----cchhhhccCCCceeeccCccC
Q 039577          229 VGFGNLSNMIKCNLESLFGLLLGGD---ALEGQ----IPTCLANLTSLISLNLRSIRL  279 (282)
Q Consensus       229 ~~~~~l~~l~~l~l~~l~~L~l~~n---~~~~~----~~~~~~~l~~L~~l~l~~n~~  279 (282)
                      ..+..  .|+.  -..|++|+++++   .+.+.    +.+.+...++|++++++.|.+
T Consensus       116 ~ala~--aL~~--N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          116 ARLLR--STLV--TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHH--HTTT--TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHH--HHhh--CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            22211  0111  134667777643   33322    334556667777777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.66  E-value=0.0027  Score=44.63  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=26.0

Q ss_pred             ccccceEEeecccceecCCc-cccCCccCccccccccceeeccCCeee
Q 039577          210 STSLENFYASSCQLSGGIPV-GFGNLSNMIKCNLESLFGLLLGGDALE  256 (282)
Q Consensus       210 ~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~~l~l~~l~~L~l~~n~~~  256 (282)
                      |.++++|+|++|.++ .+|. .|..+        ++|+.|+|++|.+.
T Consensus        30 p~~l~~L~Ls~N~l~-~l~~~~f~~l--------~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           30 PVDTTELVLTGNNLT-ALPPGLLDAL--------PALRTAHLGANPWR   68 (130)
T ss_dssp             CTTCSEEECTTSCCS-SCCTTTGGGC--------TTCCEEECCSSCCB
T ss_pred             CcCCCEEECCCCcCC-ccChhhhhhc--------cccCEEEecCCCee
Confidence            347888888888887 4444 34443        56777888888664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.57  E-value=0.00017  Score=54.44  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=67.3

Q ss_pred             ccchhhCCCCCcEEeccCc-ccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceee
Q 039577          171 VPDSICNASEVTILELSKN-LFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLL  249 (282)
Q Consensus       171 ~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~  249 (282)
                      +...+...+.|++|+++++ .+.+..   ...+...+.... .|++|++++|.++......++..  |+.  -..|++|+
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~g---a~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~a--L~~--N~tL~~L~  104 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKER---IRSLIEAACNSK-HIEKFSLANTAISDSEARGLIEL--IET--SPSLRVLN  104 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHH---HHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHH--HHH--CSSCCEEE
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHH---HHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHH--Hhc--CCccCeEe
Confidence            3444566789999999985 775321   113334455554 99999999999985544444321  111  25799999


Q ss_pred             ccCCeeeeecch----hhhccCCCceeeccCc
Q 039577          250 LGGDALEGQIPT----CLANLTSLISLNLRSI  277 (282)
Q Consensus       250 l~~n~~~~~~~~----~~~~l~~L~~l~l~~n  277 (282)
                      +++|.+.+....    .+.....|++|++++|
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            999999866443    4556688999999865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.21  E-value=0.0099  Score=41.67  Aligned_cols=55  Identities=16%  Similarity=0.127  Sum_probs=28.9

Q ss_pred             EEEcCCCccc-cCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcc
Q 039577           14 ALSLPNLTLG-GTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGII   70 (282)
Q Consensus        14 ~l~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~   70 (282)
                      .++.++++++ ..+|..+.  ++|+.|+|++|.++..-+..+..+++|+.|++.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5566666664 24554332  3566666666666532233344555666666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 1e-09
 Identities = 65/278 (23%), Positives = 101/278 (36%), Gaps = 24/278 (8%)

Query: 2   GVTC--GVPHRRVTALSLPNLTLGG--TIPPHIGNLSFLVSLT-SVAKSFYGTLPNELWQ 56
           GV C       RV  L L  L L     IP  + NL +L  L      +  G +P  + +
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 57  LQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDG 116
           L +L  + ++   + G+   D       L  L FS+N + G +P  I +L  LV +  DG
Sbjct: 100 LTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 117 NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSIC 176
           N +   +  S    S     + +  N L+G +  +    NL  + L +N L G       
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 177 NASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSN 236
           +          KN     +   S  F      LS +L      + ++ G +P G   L  
Sbjct: 219 S---------DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 237 MIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL 274
                   L  L +  + L G+IP    NL        
Sbjct: 270 --------LHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY 298

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 6e-05
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNN-LCGI 170
            L  N +  G LP  +     +  + +  N+L G +     L   +      N  LCG 
Sbjct: 250 DLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 7e-08
 Identities = 50/215 (23%), Positives = 77/215 (35%), Gaps = 48/215 (22%)

Query: 82  CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141
              L  L  + N+I    P  I   T L EL L+GN L+       + + +N+  + L  
Sbjct: 196 LTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD---IGTLASLTNLTDLDLAN 250

Query: 142 NHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASE--------------------V 181
           N +S  L     L  L  L L  N +  I P +   A                      +
Sbjct: 251 NQISN-LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 182 TILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN 241
           T L L  N  S + P         + +L T L+  + ++ ++S        NL+N     
Sbjct: 310 TYLTLYFNNISDISP---------VSSL-TKLQRLFFANNKVSD--VSSLANLTN----- 352

Query: 242 LESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
              +  L  G + +    P  LANLT +  L L  
Sbjct: 353 ---INWLSAGHNQISDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 23/190 (12%)

Query: 55  WQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL 114
             L  L  + L+   +       T      L  L  + N+I    P  +  LT+L EL L
Sbjct: 216 GILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDS 174
             N +   + P            +    +    +     L NL  L L+ NN+  I P  
Sbjct: 271 GANQIS-NISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-- 324

Query: 175 ICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNL 234
           + + +++  L  + N  S           +S+ NL T++    A   Q+S   P    NL
Sbjct: 325 VSSLTKLQRLFFANNKVSD---------VSSLANL-TNINWLSAGHNQISDLTP--LANL 372

Query: 235 SNMIKCNLES 244
           + + +  L  
Sbjct: 373 TRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 55  WQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL 114
             L+ L  + L    I    P         L+RL F+ NK+       + NLT +  L  
Sbjct: 304 SNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 115 DGNNLQAGLLPSVIFNSSNIQVIILYGN 142
             N +   L P  + N + I  + L   
Sbjct: 359 GHNQIS-DLTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 13/182 (7%)

Query: 60  LRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL 119
             ++DL +  I   + D    +   L  L    NKI    P     L +L  LYL  N L
Sbjct: 33  TALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 120 QAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNAS 179
           +  L   +      ++V       +   + + +    +  L        GI   +     
Sbjct: 92  K-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 180 EVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIK 239
           +++ + ++    + +              L  SL   +    +++         L+N+ K
Sbjct: 151 KLSYIRIADTNITTIPQ-----------GLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 240 CN 241
             
Sbjct: 200 LG 201

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 42/269 (15%), Positives = 84/269 (31%), Gaps = 16/269 (5%)

Query: 12  VTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIP 71
              L L N  +         NL  L +L  +        P     L +L  + LS   + 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL- 91

Query: 72  GSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNS 131
             LP+        LR       K+R  +   +  +  +           +G+        
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV--ELGTNPLKSSGIENGAFQGM 149

Query: 132 SNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF 191
             +  I +   +++   +     P+L  L L  N +  +   S+   + +  L LS N  
Sbjct: 150 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 192 SCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLG 251
           S +   +    P+        L   + ++ +L   +P G  +   +    L +     +G
Sbjct: 208 SAVDNGSLANTPH--------LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 252 GDALEGQIPTCLANLTSLISLNLRSIRLN 280
            +      P       S   ++L S  + 
Sbjct: 259 SNDFCP--PGYNTKKASYSGVSLFSNPVQ 285

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-07
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 12/186 (6%)

Query: 51  PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV 110
           P     L RL  + L        L          L+ L    N ++        +L  L 
Sbjct: 98  PATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCG 169
            L+L GN +   +         ++  ++L+ N ++     +   L  L  L+L+ NNL  
Sbjct: 157 HLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 170 IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPV 229
           +  +++     +  L L+ N + C               L   L+ F  SS ++   +P 
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARP---------LWAWLQKFRGSSSEVPCSLPQ 266

Query: 230 GFGNLS 235
                 
Sbjct: 267 RLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 16/174 (9%)

Query: 70  IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIF 129
           +P  +P  +       +R+    N+I             L  L+L  N L      +   
Sbjct: 26  VPVGIPAAS-------QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 130 NSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSK 188
            +   Q+ +     L     ++   L  L  L L +  L  + P      + +  L L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNL 242
           N    L  +T     N        L + +    ++S      F  L ++ +  L
Sbjct: 139 NALQALPDDTFRDLGN--------LTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 4/119 (3%)

Query: 82  CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141
              ++ L    NKI+    +    L +L  L L  N +   ++P    + +++  + L  
Sbjct: 77  ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLAS 135

Query: 142 NHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSG 200
           N  + +   + +   L    L         P  +    +V I +L  + F C   N+ G
Sbjct: 136 NPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSENSEG 191

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 13/112 (11%), Positives = 29/112 (25%), Gaps = 1/112 (0%)

Query: 82  CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141
                 L  + +         +     L ELY++       L    +     ++ + +  
Sbjct: 7   PHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 142 NHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSC 193
           + L      + +     +      N    +         +  L LS N   C
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 105 NLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQ 164
           N     EL L G  +    + ++         I    N +   L     L  L+ L +  
Sbjct: 16  NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNN 72

Query: 165 NNLCGIVPDSICNASEVTILELSKNLFSCL 194
           N +C I         ++T L L+ N    L
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVEL 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 108 ELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-----YLPNLENLFL 162
           ++  L +    L       ++      QV+ L    L+      I       P L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 163 WQNNLCGIVPDSICNASEVTILELSKNLFSC 193
             N L  +    +    +    ++ K     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 82  CIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYG 141
              L    +  N     I         L EL +  N L    LP++      ++ +I   
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALP---PRLERLIASF 313

Query: 142 NHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICN 177
           NHL+  +       NL+ L +  N L    PD   +
Sbjct: 314 NHLA-EVPEL--PQNLKQLHVEYNPLREF-PDIPES 345

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 40/224 (17%), Positives = 62/224 (27%), Gaps = 30/224 (13%)

Query: 56  QLQRLRIVDLSSG---IIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL 112
           ++     V+        +P  LP D          L  S N +  +    +   T L +L
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKD-------TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 113 YLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVP 172
            LD   L       V      +  + L  N L         LP L  L +  N L  +  
Sbjct: 61  NLDRAELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 173 DSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFG 232
            ++    E+  L L  N    L P         +   +  LE    ++  L+        
Sbjct: 118 GALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 233 NLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRS 276
            L N+    L+               IP        L    L  
Sbjct: 170 GLENLDTLLLQENSLY---------TIPKGFFGSHLLPFAFLHG 204

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 13  TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPG 72
             L L    L   +   + +   +       +SF      E +   R++ +DLS+ +I  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAF--RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 73  SLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVEL 112
           S        C  L+ LS    ++   I   +   + LV L
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.01
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.03

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.2e-32  Score=226.59  Aligned_cols=258  Identities=25%  Similarity=0.387  Sum_probs=222.4

Q ss_pred             CCeeecCC--CCceEEEEcCCCcccc--CCCccccCCCCccEEEecC-CcceeeCCccccCCCCCcEEEcCCCcccccCC
Q 039577            1 VGVTCGVP--HRRVTALSLPNLTLGG--TIPPHIGNLSFLVSLTSVA-KSFYGTLPNELWQLQRLRIVDLSSGIIPGSLP   75 (282)
Q Consensus         1 ~~~~~~~~--~~~l~~l~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~   75 (282)
                      +||+|+..  ..+|++|+++++.+.+  .+|+.++++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+
T Consensus        39 ~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~  118 (313)
T d1ogqa_          39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP  118 (313)
T ss_dssp             TTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred             CCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc
Confidence            59999763  4589999999999987  5889999999999999986 78988999999999999999999999985555


Q ss_pred             CCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCC-cEEEecCccccccCCCCcCC
Q 039577           76 DDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI-QVIILYGNHLSGHLRSSIYL  154 (282)
Q Consensus        76 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~  154 (282)
                      . .+..+.+|+++++..|.+...+|..+..++.++.+++++|.+ .+.+|..+..+..+ +.+.++.|.+....+..+..
T Consensus       119 ~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l-~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~  196 (313)
T d1ogqa_         119 D-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             G-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             c-cccchhhhcccccccccccccCchhhccCcccceeecccccc-ccccccccccccccccccccccccccccccccccc
Confidence            4 788899999999999998888899999999999999999988 55677777777765 88999999998777766633


Q ss_pred             CCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCC
Q 039577          155 PNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNL  234 (282)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  234 (282)
                      .....+++..+...+..|..+..+++++.+++.++.+.+.++        .+..++ +++.|++++|++++.+|.+++++
T Consensus       197 l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~--------~~~~~~-~L~~L~Ls~N~l~g~iP~~l~~L  267 (313)
T d1ogqa_         197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--------KVGLSK-NLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--------GCCCCT-TCCEEECCSSCCEECCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc--------cccccc-ccccccCccCeecccCChHHhCC
Confidence            344578999998888888888889999999999998875433        345555 99999999999999999988875


Q ss_pred             ccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCcc
Q 039577          235 SNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       235 ~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~  278 (282)
                              ++|++|++++|+++|.+|+ +.++.+|+.+++++|+
T Consensus       268 --------~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         268 --------KFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             --------TTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             --------CCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence                    6788999999999999986 5788999999999986

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=4.8e-26  Score=186.86  Aligned_cols=228  Identities=23%  Similarity=0.327  Sum_probs=193.6

Q ss_pred             CCccEEEecCCccee--eCCccccCCCCCcEEEcCC-CcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCce
Q 039577           34 SFLVSLTSVAKSFYG--TLPNELWQLQRLRIVDLSS-GIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV  110 (282)
Q Consensus        34 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  110 (282)
                      .+++.|+|+++.+.+  .+|..+.++++|++|++++ |.+.|.+|. .+.++++|++|++++|.+.+..+..+..+..|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~-~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc-ccccccccchhhhccccccccccccccchhhhc
Confidence            479999999998876  5889999999999999997 788888998 789999999999999999977777788999999


Q ss_pred             EEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCC-ccEEEeecCcceeeccchhhCCCCCcEEeccC
Q 039577          111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPN-LENLFLWQNNLCGIVPDSICNASEVTILELSK  188 (282)
Q Consensus       111 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  188 (282)
                      .++++.|.. ...+|..+.+++.++.+++.+|.+....+..+ .+.. ++.+.+++|.+++..|..+..+. ...+++..
T Consensus       129 ~l~l~~N~~-~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEE-ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             ccccccccc-cccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            999999987 56678889999999999999999987777666 5555 48899999999988887776654 45788998


Q ss_pred             cccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCC
Q 039577          189 NLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTS  268 (282)
Q Consensus       189 ~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~  268 (282)
                      +...+.+|       ..+..++ +++.+++++|.+.+.+| .+..+        ++++.|++++|+++|.+|.++.++++
T Consensus       207 ~~~~~~~~-------~~~~~~~-~l~~l~~~~~~l~~~~~-~~~~~--------~~L~~L~Ls~N~l~g~iP~~l~~L~~  269 (313)
T d1ogqa_         207 NMLEGDAS-------VLFGSDK-NTQKIHLAKNSLAFDLG-KVGLS--------KNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             SEEEECCG-------GGCCTTS-CCSEEECCSSEECCBGG-GCCCC--------TTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             cccccccc-------ccccccc-ccccccccccccccccc-ccccc--------cccccccCccCeecccCChHHhCCCC
Confidence            88875543       3555666 89999999999886544 45443        67899999999999999999999999


Q ss_pred             CceeeccCccCCC
Q 039577          269 LISLNLRSIRLNS  281 (282)
Q Consensus       269 L~~l~l~~n~~~~  281 (282)
                      |++|++++|+|+|
T Consensus       270 L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         270 LHSLNVSFNNLCG  282 (313)
T ss_dssp             CCEEECCSSEEEE
T ss_pred             CCEEECcCCcccc
Confidence            9999999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.2e-23  Score=170.16  Aligned_cols=249  Identities=18%  Similarity=0.193  Sum_probs=182.5

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++.+++|++++|.++...+.+|.++++|++|++++|.+....|..+.++++|+.+++++|.++ .+|.   .....++.|
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~---~~~~~l~~L  105 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE---KMPKTLQEL  105 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCS---SCCTTCCEE
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCcc---chhhhhhhh
Confidence            567888888888886443446788888888888888887655667778888888888888886 6665   234577788


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCC-CCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQA-GLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  167 (282)
                      ....|.+....+..+.....+..++...+.... ...+..+..+++|+.+++.++.+.... .. .+++|+.|++++|..
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~~-~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QG-LPPSLTELHLDGNKI  183 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SS-CCTTCSEEECTTSCC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC-cc-cCCccCEEECCCCcC
Confidence            887777764323334455667777776665321 122345667788999999998876443 33 368899999999988


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG  247 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~  247 (282)
                      .+..+..+..++.+++|++++|.+.+..+       .++..++ +|++|++++|+++ .+|.++..+        ++|++
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~-------~~~~~l~-~L~~L~L~~N~L~-~lp~~l~~l--------~~L~~  246 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAVDN-------GSLANTP-HLRELHLNNNKLV-KVPGGLADH--------KYIQV  246 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECT-------TTGGGST-TCCEEECCSSCCS-SCCTTTTTC--------SSCCE
T ss_pred             CCCChhHhhcccccccccccccccccccc-------ccccccc-cceeeeccccccc-ccccccccc--------cCCCE
Confidence            87777788888999999999998875433       3555666 8999999999987 677777665        67888


Q ss_pred             eeccCCeeeeecchhh------hccCCCceeeccCccCC
Q 039577          248 LLLGGDALEGQIPTCL------ANLTSLISLNLRSIRLN  280 (282)
Q Consensus       248 L~l~~n~~~~~~~~~~------~~l~~L~~l~l~~n~~~  280 (282)
                      |++++|+++......|      ...++|+.+++++|.++
T Consensus       247 L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             EECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            8888888884322333      45688999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-22  Score=164.39  Aligned_cols=189  Identities=20%  Similarity=0.219  Sum_probs=83.3

Q ss_pred             CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc-cCeecccCCcCCcCCCCceEEE
Q 039577           35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS-FNKIRGWIPQKIGNLTELVELY  113 (282)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~~~~l~~L~~L~  113 (282)
                      .+++|+|++|+++..-+..+.++++|+.++++++.+. .++...+..+..++.+... .+.+....+..+..+++|++|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            4455555555554332334445555555555555543 2232234444444444432 2223322233344455555555


Q ss_pred             ecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccc
Q 039577          114 LDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS  192 (282)
Q Consensus       114 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  192 (282)
                      +++|.+ ....+..+....+|+.+++.+|.++..++..+ .+++|+.|++++|.++...+..+..+++|+++++++|.++
T Consensus       112 l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCccc-ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            555444 21122233344445555555555544333333 3444555555555544333334444455555555555544


Q ss_pred             eecCCCCCCCCCcccccccccceEEeecccceecCCccccC
Q 039577          193 CLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGN  233 (282)
Q Consensus       193 ~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  233 (282)
                      +..|.       ++..++ +|+.|++++|.+.+..+..++.
T Consensus       191 ~i~~~-------~f~~l~-~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         191 HVHPH-------AFRDLG-RLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             EECTT-------TTTTCT-TCCEEECCSSCCSCCCHHHHTT
T ss_pred             ccChh-------Hhhhhh-hccccccccccccccccccccc
Confidence            33222       333333 4555555555554333333333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=8.4e-22  Score=160.70  Aligned_cols=243  Identities=19%  Similarity=0.218  Sum_probs=189.5

Q ss_pred             ceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEc
Q 039577           11 RVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSF   90 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l   90 (282)
                      ..++++-++.+++ ++|..+.  +++++|++++|.+...-+..+.++++|+++++++|.+. .++...+..+++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecc
Confidence            5567888887775 6787664  68999999999987433446889999999999999997 565547899999999999


Q ss_pred             ccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccc--cCCCCc-CCCCccEEEeecCcc
Q 039577           91 SFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG--HLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      .+|+++ .+|..+  ...++.|++.++.+.. ..+..+........+....+....  .....+ .+++|+.+++++|.+
T Consensus        87 ~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          87 SKNQLK-ELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CSSCCS-BCCSSC--CTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCCccC-cCccch--hhhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            999988 466543  4678999999988733 222334556677777777664432  222333 678999999999988


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccce
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFG  247 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~  247 (282)
                      . .+|..  .++++++|++++|......+       ..+..++ .+++|++++|.+.+..+.++..+        ++|++
T Consensus       163 ~-~l~~~--~~~~L~~L~l~~n~~~~~~~-------~~~~~~~-~l~~L~~s~n~l~~~~~~~~~~l--------~~L~~  223 (305)
T d1xkua_         163 T-TIPQG--LPPSLTELHLDGNKITKVDA-------ASLKGLN-NLAKLGLSFNSISAVDNGSLANT--------PHLRE  223 (305)
T ss_dssp             C-SCCSS--CCTTCSEEECTTSCCCEECT-------GGGTTCT-TCCEEECCSSCCCEECTTTGGGS--------TTCCE
T ss_pred             c-ccCcc--cCCccCEEECCCCcCCCCCh-------hHhhccc-ccccccccccccccccccccccc--------cccee
Confidence            7 66654  36799999999998875543       3556666 89999999999987767677664        67889


Q ss_pred             eeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          248 LLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       248 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      |++++|.++ .+|..+..+++|+.|++++|+|+.
T Consensus       224 L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         224 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             EECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             eeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            999999998 778899999999999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-21  Score=158.12  Aligned_cols=223  Identities=20%  Similarity=0.186  Sum_probs=178.9

Q ss_pred             EEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCC
Q 039577           39 LTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN  118 (282)
Q Consensus        39 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  118 (282)
                      ++.+++.+. .+|..+.  +++++|++++|.++ .++...+..+++|++|+++++.+....+..+.....++.+++..+.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            344554444 5665543  57899999999997 7777689999999999999999886666667778899998876544


Q ss_pred             CCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCC
Q 039577          119 LQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPN  197 (282)
Q Consensus       119 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  197 (282)
                      ......+..+..+++|+.|++..+.+.......+ ...+|+.+++++|.+++..+..+...++|++|++++|.+++..+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            3233345678889999999999999876665555 688999999999999844456677889999999999999854333


Q ss_pred             CCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCc
Q 039577          198 TSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSI  277 (282)
Q Consensus       198 ~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n  277 (282)
                             .+..++ +|+++++++|.+++..|..+..+        ++++.|++++|.+.+..+..|..+++|+.+++++|
T Consensus       172 -------~f~~l~-~L~~l~l~~N~l~~i~~~~f~~l--------~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         172 -------AFRGLH-SLDRLLLHQNRVAHVHPHAFRDL--------GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             -------TTTTCT-TCCEEECCSSCCCEECTTTTTTC--------TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             -------hhcccc-ccchhhhhhccccccChhHhhhh--------hhcccccccccccccccccccccccccCEEEecCC
Confidence                   445566 99999999999998888888775        67889999999999888889999999999999999


Q ss_pred             cCCC
Q 039577          278 RLNS  281 (282)
Q Consensus       278 ~~~~  281 (282)
                      .+..
T Consensus       236 ~l~C  239 (284)
T d1ozna_         236 PWVC  239 (284)
T ss_dssp             CEEC
T ss_pred             CCCC
Confidence            8763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-21  Score=155.25  Aligned_cols=199  Identities=20%  Similarity=0.199  Sum_probs=162.2

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      .....+++.++++++ .+|..+.  +++++|+|++|.+....+..+.++++|++|++++|.++ .++.  +..+++|++|
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L   82 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTL   82 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccccc
Confidence            355667899998887 5787664  68999999999998655567889999999999999986 6664  4678999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      ++++|++. ..+..+..+++|+.|+++++.+ ....+..+..+.+++.|.+.+|.+....+..+ .++.++.+++++|.+
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccc-cccccccccccccccccccccc-ceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            99999988 4577788899999999999987 33344556778899999999999887766666 788999999999999


Q ss_pred             eeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccce
Q 039577          168 CGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLS  224 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~  224 (282)
                      ++..+..+..+++|++|++++|.++        .+|..+..++ +|+.|++++|.+.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~--------~lp~~~~~~~-~L~~L~L~~Np~~  208 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY--------TIPKGFFGSH-LLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred             cccCccccccccccceeecccCCCc--------ccChhHCCCC-CCCEEEecCCCCC
Confidence            8555566788899999999999987        4555666676 8999999998765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=2.1e-20  Score=156.81  Aligned_cols=243  Identities=21%  Similarity=0.242  Sum_probs=134.8

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      .++++|++++++++. + ..+..+++|++|++++|.++. ++ .+.++++|++|++++|.+. .++  .+..+++|+.++
T Consensus        44 ~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~-~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA-DIT--PLANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc-ccc--cccccccccccc
Confidence            468888888888763 3 357778888999998888874 44 3778888888888888886 343  256778888888


Q ss_pred             cccCeecccC---------------------------------------------------------------CcCCcCC
Q 039577           90 FSFNKIRGWI---------------------------------------------------------------PQKIGNL  106 (282)
Q Consensus        90 l~~~~~~~~~---------------------------------------------------------------~~~~~~l  106 (282)
                      +.++.+.+..                                                               ...+..+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            7765533200                                                               0111223


Q ss_pred             CCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEe
Q 039577          107 TELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILE  185 (282)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  185 (282)
                      ++++.++++++.++.  .+ .....++|+.|++.+|.++...  .+ .+++|+.+++++|.++ .++. +..+++|++|+
T Consensus       197 ~~~~~l~l~~n~i~~--~~-~~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~  269 (384)
T d2omza2         197 TNLESLIATNNQISD--IT-PLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELK  269 (384)
T ss_dssp             TTCSEEECCSSCCCC--CG-GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEE
T ss_pred             cccceeeccCCccCC--CC-cccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccC-CCCc-ccccccCCEee
Confidence            455666666655522  22 1334456666666666554321  22 4566666666666655 3322 44556666666


Q ss_pred             ccCcccceecCCC--------------CCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeecc
Q 039577          186 LSKNLFSCLIPNT--------------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLG  251 (282)
Q Consensus       186 l~~~~~~~~~~~~--------------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~  251 (282)
                      ++++.+.+..+-.              ...+ ..+..++ +++.+++++|++++. + .+..+        ++|++|+++
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~-~~~~~~~-~l~~L~ls~n~l~~l-~-~l~~l--------~~L~~L~L~  337 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDI-SPISNLK-NLTYLTLYFNNISDI-S-PVSSL--------TKLQRLFFA  337 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCC-GGGGGCT-TCSEEECCSSCCSCC-G-GGGGC--------TTCCEEECC
T ss_pred             ccCcccCCCCccccccccccccccccccccc-cccchhc-ccCeEECCCCCCCCC-c-ccccC--------CCCCEEECC
Confidence            6666554321100              0011 1233333 566666666655532 1 13333        344555555


Q ss_pred             CCeeeeecchhhhccCCCceeeccCccCC
Q 039577          252 GDALEGQIPTCLANLTSLISLNLRSIRLN  280 (282)
Q Consensus       252 ~n~~~~~~~~~~~~l~~L~~l~l~~n~~~  280 (282)
                      +|.+++ ++ .+..+++|++|++++|+|+
T Consensus       338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         338 NNKVSD-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             CCCCCC-Ch-hHcCCCCCCEEECCCCcCC
Confidence            555542 22 3455555555555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.7e-20  Score=146.33  Aligned_cols=178  Identities=25%  Similarity=0.274  Sum_probs=153.1

Q ss_pred             CCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEE
Q 039577            9 HRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRL   88 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L   88 (282)
                      ++.+++|+|++|.+++..+.+|..+++|++|++++|.++. ++ .+..+++|+.|++++|.+. ..+. .+..+++|+.|
T Consensus        30 p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~L  105 (266)
T d1p9ag_          30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVL  105 (266)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCC-CTTTCTTCCEE
T ss_pred             CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccc-cccc-ccccccccccc
Confidence            5789999999999986555688999999999999999874 44 3568999999999999986 5555 67899999999


Q ss_pred             EcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcc
Q 039577           89 SFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNL  167 (282)
Q Consensus        89 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  167 (282)
                      +++++.+....+..+..+.++++|++.+|.++ ...+..+..++.++.+++++|.++...+..+ .+++|++|++++|.+
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence            99999988655666788899999999999884 3334556778999999999999997777766 799999999999999


Q ss_pred             eeeccchhhCCCCCcEEeccCcccc
Q 039577          168 CGIVPDSICNASEVTILELSKNLFS  192 (282)
Q Consensus       168 ~~~~~~~l~~~~~L~~L~l~~~~~~  192 (282)
                      + .+|..+..+++|+.|++++|.+.
T Consensus       185 ~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         185 Y-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             C-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             c-ccChhHCCCCCCCEEEecCCCCC
Confidence            8 89988888999999999999876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=4.1e-19  Score=148.84  Aligned_cols=239  Identities=21%  Similarity=0.232  Sum_probs=163.7

Q ss_pred             cCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeec
Q 039577           17 LPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIR   96 (282)
Q Consensus        17 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   96 (282)
                      +....+++.+.  ...+.+|++|+++++.+.. + ..+..+++|++|++++|.++ .++.  ++.+++|++|++++|.+.
T Consensus        29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccccc
Confidence            44444444332  3456789999999998873 4 45788999999999999997 5553  789999999999999988


Q ss_pred             ccCCcCCcCCCCceEEEecCCCCCCCC-----------------------------------------------------
Q 039577           97 GWIPQKIGNLTELVELYLDGNNLQAGL-----------------------------------------------------  123 (282)
Q Consensus        97 ~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------------------------------------------------  123 (282)
                      + ++ .+..+++|+.|++.++..+...                                                     
T Consensus       102 ~-i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (384)
T d2omza2         102 D-IT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER  179 (384)
T ss_dssp             C-CG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCE
T ss_pred             c-cc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccc
Confidence            4 33 3788999999999887653200                                                     


Q ss_pred             ---------CCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577          124 ---------LPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL  194 (282)
Q Consensus       124 ---------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  194 (282)
                               .......+++++.+.++.+.+....+. ..+++|+++++++|.++ .++ .+..+++|+.+++.+|.+++.
T Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~  256 (384)
T d2omza2         180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNL  256 (384)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred             ccccccccccccccccccccceeeccCCccCCCCcc-cccCCCCEEECCCCCCC-Ccc-hhhcccccchhccccCccCCC
Confidence                     001112234455556655555433221 14567777777777765 443 456677888888888877632


Q ss_pred             cCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCcccc--------------ccccceeeccCCeeeeecc
Q 039577          195 IPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCN--------------LESLFGLLLGGDALEGQIP  260 (282)
Q Consensus       195 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~--------------l~~l~~L~l~~n~~~~~~~  260 (282)
                              + .+..++ +|++++++++.+.+. ++ +..+..++.+.              +++++.|++++|.+++. +
T Consensus       257 --------~-~~~~~~-~L~~L~l~~~~l~~~-~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~  323 (384)
T d2omza2         257 --------A-PLSGLT-KLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-S  323 (384)
T ss_dssp             --------G-GGTTCT-TCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G
T ss_pred             --------C-cccccc-cCCEeeccCcccCCC-Cc-cccccccccccccccccccccccchhcccCeEECCCCCCCCC-c
Confidence                    2 244455 888888888877632 21 33333333332              57899999999999854 3


Q ss_pred             hhhhccCCCceeeccCccCCC
Q 039577          261 TCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       261 ~~~~~l~~L~~l~l~~n~~~~  281 (282)
                       .+..+++|++|++++|+|++
T Consensus       324 -~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         324 -PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             -GGGGCTTCCEEECCSSCCCC
T ss_pred             -ccccCCCCCEEECCCCCCCC
Confidence             38899999999999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-18  Score=135.39  Aligned_cols=225  Identities=14%  Similarity=0.106  Sum_probs=148.0

Q ss_pred             eecCCCCceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCC
Q 039577            4 TCGVPHRRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCI   83 (282)
Q Consensus         4 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~   83 (282)
                      .|++.   -+.++.++.+++ .+|..+.  +++++|++++|.+...-+..+.++++|+++++++|.+...++...+..++
T Consensus         5 ~C~C~---~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~   78 (242)
T d1xwdc1           5 ICHCS---NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP   78 (242)
T ss_dssp             SEEEC---SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT
T ss_pred             cCCCc---CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc
Confidence            36662   256788887776 6776553  58999999999997544456788999999999999887566766788899


Q ss_pred             CccEEEccc-CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-C-CCCccEE
Q 039577           84 MLRRLSFSF-NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-Y-LPNLENL  160 (282)
Q Consensus        84 ~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~-~~~L~~L  160 (282)
                      .++++.+.. +.+....+..+..+++|+++++.++.++.......+..++.+..+...++.+.......+ . ...++.+
T Consensus        79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L  158 (242)
T d1xwdc1          79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL  158 (242)
T ss_dssp             TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceee
Confidence            999998754 556555566788899999999999987432222233344555555555555554444444 2 3467778


Q ss_pred             EeecCcceeeccchhhCCCCCcEE-eccCcccceecCCCCCCCCC-cccccccccceEEeecccceecCCccccCCccCc
Q 039577          161 FLWQNNLCGIVPDSICNASEVTIL-ELSKNLFSCLIPNTSGVFPN-SIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMI  238 (282)
Q Consensus       161 ~l~~~~~~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~l~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  238 (282)
                      ++.+|.++ .++.......++..+ .+.+|.++        .+|. .+..++ +|++|++++|+++...+..+.++++|+
T Consensus       159 ~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~--------~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         159 WLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLE--------ELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLKKLR  228 (242)
T ss_dssp             ECCSSCCC-EECTTTTTTCCEEEEECTTCTTCC--------CCCTTTTTTSC-CCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             eccccccc-ccccccccchhhhccccccccccc--------cccHHHhcCCC-CCCEEECCCCcCCccCHHHHcCCcccc
Confidence            88888776 444444444555444 45666665        3332 244566 888888888888733233455655555


Q ss_pred             cccccc
Q 039577          239 KCNLES  244 (282)
Q Consensus       239 ~l~l~~  244 (282)
                      .+++.+
T Consensus       229 ~l~~~~  234 (242)
T d1xwdc1         229 ARSTYN  234 (242)
T ss_dssp             SSSEES
T ss_pred             cCcCCC
Confidence            444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.7e-16  Score=123.30  Aligned_cols=202  Identities=20%  Similarity=0.245  Sum_probs=145.8

Q ss_pred             EEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCe
Q 039577           15 LSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNK   94 (282)
Q Consensus        15 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~   94 (282)
                      +++..+.+++..  .+..+.+|+.|++.+|.+. .++ .+.++++|+.+++++|.+. .+.  .+..+++++++++.+|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~-~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCG--GGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceee-ccc--ccccccccccccccccc
Confidence            344444444422  3456788999999999887 354 5788999999999999886 333  36788999999999888


Q ss_pred             ecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccch
Q 039577           95 IRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDS  174 (282)
Q Consensus        95 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  174 (282)
                      ++ .+ ..+..++.|+.++++++....  . ..+...+.++.+.+..+.+.... ....+++|+.|++++|.+. ..+ .
T Consensus        97 ~~-~i-~~l~~l~~L~~l~l~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~-~~~-~  168 (227)
T d1h6ua2          97 LK-NV-SAIAGLQSIKTLDLTSTQITD--V-TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVS-DLT-P  168 (227)
T ss_dssp             CS-CC-GGGTTCTTCCEEECTTSCCCC--C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC-CCG-G
T ss_pred             cc-cc-ccccccccccccccccccccc--c-chhccccchhhhhchhhhhchhh-hhccccccccccccccccc-cch-h
Confidence            77 33 347788999999998887632  2 34566788888888887765332 2226888999999999876 333 3


Q ss_pred             hhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeecc
Q 039577          175 ICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLG  251 (282)
Q Consensus       175 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~  251 (282)
                      +..+++|++|++++|.+++        ++ .+..++ +|++|++++|++++ ++. ++.+        ++|+.|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~--------l~-~l~~l~-~L~~L~Ls~N~lt~-i~~-l~~l--------~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD--------IS-PLASLP-NLIEVHLKNNQISD-VSP-LANT--------SNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC--------CG-GGGGCT-TCCEEECTTSCCCB-CGG-GTTC--------TTCCEEEEE
T ss_pred             hcccccceecccCCCccCC--------Ch-hhcCCC-CCCEEECcCCcCCC-Ccc-cccC--------CCCCEEEee
Confidence            6788999999999998863        32 356677 99999999999874 442 5555        455555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.72  E-value=1.3e-15  Score=125.57  Aligned_cols=236  Identities=25%  Similarity=0.277  Sum_probs=140.4

Q ss_pred             CceEEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEE
Q 039577           10 RRVTALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLS   89 (282)
Q Consensus        10 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~   89 (282)
                      .++++|+++++.++ .+|+.   .++|++|++++|.++ .+|..   ..+|+.|++.+|.++ .++.    -.+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence            35788999999886 57753   468899999998887 56654   457888888888876 4442    124688899


Q ss_pred             cccCeecccCCcCCcCCCCceEEEecCCCCCCCC-----------------CCccccCCCCCcEEEecCcccccc-----
Q 039577           90 FSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGL-----------------LPSVIFNSSNIQVIILYGNHLSGH-----  147 (282)
Q Consensus        90 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------------~~~~~~~~~~L~~L~l~~~~~~~~-----  147 (282)
                      +++|.+. .+|. +..++.|++|++.++.+....                 ....+..++.++.+.+..+.....     
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             ccccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccc
Confidence            8888887 4554 567888888888877653210                 001122334455555554433211     


Q ss_pred             --------------CCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceec------------------
Q 039577          148 --------------LRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLI------------------  195 (282)
Q Consensus       148 --------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------------------  195 (282)
                                    .+....++.++.+++++|... ..+..   ..++..+.+..+.+....                  
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~---~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG  258 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccccc---cccccccccccccccccccccccccccccccccccc
Confidence                          111113566777777666543 22211   122223333222221110                  


Q ss_pred             ----CCC-------CCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhh
Q 039577          196 ----PNT-------SGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLA  264 (282)
Q Consensus       196 ----~~~-------~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~  264 (282)
                          +..       ...++ .+...+.+|++|++++|.+. .+|..+           ++|++|++++|+++ .+|..  
T Consensus       259 l~~l~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~l~-~lp~~~-----------~~L~~L~L~~N~L~-~l~~~--  322 (353)
T d1jl5a_         259 LSELPPNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLI-ELPALP-----------PRLERLIASFNHLA-EVPEL--  322 (353)
T ss_dssp             ESCCCTTCCEEECCSSCCS-EECCCCTTCCEEECCSSCCS-CCCCCC-----------TTCCEEECCSSCCS-CCCCC--
T ss_pred             cccccchhcccccccCccc-cccccCCCCCEEECCCCccC-cccccc-----------CCCCEEECCCCcCC-ccccc--
Confidence                000       00111 11122238999999999887 566532           67888899999887 56643  


Q ss_pred             ccCCCceeeccCccCCC
Q 039577          265 NLTSLISLNLRSIRLNS  281 (282)
Q Consensus       265 ~l~~L~~l~l~~n~~~~  281 (282)
                       +++|++|++++|+|+.
T Consensus       323 -~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         323 -PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             -CTTCCEEECCSSCCSS
T ss_pred             -cCCCCEEECcCCcCCC
Confidence             4678999999998874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.3e-16  Score=123.91  Aligned_cols=207  Identities=21%  Similarity=0.270  Sum_probs=156.0

Q ss_pred             CccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEe
Q 039577           35 FLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL  114 (282)
Q Consensus        35 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  114 (282)
                      ++..+++..+.+.+..  .+..+.+|+.|++.+|.+. .++  .+..+++|++|++++|.+.. + ..+..+++++++++
T Consensus        20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~ls~n~i~~-~-~~l~~l~~l~~l~~   92 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITD-L-APLKNLTKITELEL   92 (227)
T ss_dssp             HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCC-C-GGGTTCCSCCEEEC
T ss_pred             HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch--hHhcCCCCcEeecCCceeec-c-cccccccccccccc
Confidence            3344455555555433  3457889999999999987 564  47899999999999999884 2 23788999999999


Q ss_pred             cCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccccee
Q 039577          115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCL  194 (282)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  194 (282)
                      .++.++.  ++ .+..+++|+.+.++++......+ ....+.++.+.++.+.+....  .+...++|++|++.+|.+.+.
T Consensus        93 ~~n~~~~--i~-~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2          93 SGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             CSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred             ccccccc--cc-cccccccccccccccccccccch-hccccchhhhhchhhhhchhh--hhccccccccccccccccccc
Confidence            9998743  44 47788999999999887654322 125788899999888876322  356788999999999987632


Q ss_pred             cCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeec
Q 039577          195 IPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNL  274 (282)
Q Consensus       195 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l  274 (282)
                              + .+.+++ +|++|++++|.+++ ++. ++++        ++|++|++++|++++ ++ .+..+++|+.+++
T Consensus       167 --------~-~l~~l~-~L~~L~Ls~n~l~~-l~~-l~~l--------~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~l  224 (227)
T d1h6ua2         167 --------T-PLANLS-KLTTLKADDNKISD-ISP-LASL--------PNLIEVHLKNNQISD-VS-PLANTSNLFIVTL  224 (227)
T ss_dssp             --------G-GGTTCT-TCCEEECCSSCCCC-CGG-GGGC--------TTCCEEECTTSCCCB-CG-GGTTCTTCCEEEE
T ss_pred             --------h-hhcccc-cceecccCCCccCC-Chh-hcCC--------CCCCEEECcCCcCCC-Cc-ccccCCCCCEEEe
Confidence                    1 255677 99999999998873 332 4443        678999999999984 44 4889999999999


Q ss_pred             cC
Q 039577          275 RS  276 (282)
Q Consensus       275 ~~  276 (282)
                      ++
T Consensus       225 sn  226 (227)
T d1h6ua2         225 TN  226 (227)
T ss_dssp             EE
T ss_pred             eC
Confidence            73

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.5e-16  Score=122.63  Aligned_cols=218  Identities=17%  Similarity=0.136  Sum_probs=152.5

Q ss_pred             cEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCC-cCCcCCCCceEEEec
Q 039577           37 VSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIP-QKIGNLTELVELYLD  115 (282)
Q Consensus        37 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~  115 (282)
                      ++++.++..++ .+|..+.  +++++|++++|.++ .++...|.++++|++|++++|.+...++ ..|..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777777766 6776654  58999999999997 7777678999999999999998764443 457788999999886


Q ss_pred             C-CCCCCCCCCccccCCCCCcEEEecCccccccCCCCc--CCCCccEEEeecCcceeeccchhhCC-CCCcEEeccCccc
Q 039577          116 G-NNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI--YLPNLENLFLWQNNLCGIVPDSICNA-SEVTILELSKNLF  191 (282)
Q Consensus       116 ~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~  191 (282)
                      . +.+ ....+..+..+++|+++.+..+.+........  .+..+..+...++.+...-+..+..+ ..++.+++.+|.+
T Consensus        87 ~~n~l-~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTC-CEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccc-cccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            5 444 33455667889999999999998865443222  34555555555656653323344444 4788999999988


Q ss_pred             ceecCCCCCCCCCcccccccccceEE-eecccceecCCc-cccCCccCccccccccceeeccCCeeeeecchhhhccCCC
Q 039577          192 SCLIPNTSGVFPNSIGNLSTSLENFY-ASSCQLSGGIPV-GFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSL  269 (282)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~~~~L~~L~-l~~n~~~~~~~~-~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L  269 (282)
                      +...        ......+ +++++. +++|.++ .+|. .+.++        ++|++|++++|.++...+..|.++++|
T Consensus       166 ~~i~--------~~~~~~~-~l~~~~~l~~n~l~-~l~~~~f~~l--------~~L~~L~Ls~N~l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         166 QEIH--------NCAFNGT-QLDELNLSDNNNLE-ELPNDVFHGA--------SGPVILDISRTRIHSLPSYGLENLKKL  227 (242)
T ss_dssp             CEEC--------TTTTTTC-CEEEEECTTCTTCC-CCCTTTTTTS--------CCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             cccc--------cccccch-hhhccccccccccc-cccHHHhcCC--------CCCCEEECCCCcCCccCHHHHcCCccc
Confidence            7432        2233344 555554 5667777 5554 34554        788999999999984434568888888


Q ss_pred             ceeeccCc
Q 039577          270 ISLNLRSI  277 (282)
Q Consensus       270 ~~l~l~~n  277 (282)
                      +.+++.+.
T Consensus       228 ~~l~~~~l  235 (242)
T d1xwdc1         228 RARSTYNL  235 (242)
T ss_dssp             ESSSEESS
T ss_pred             ccCcCCCC
Confidence            88887653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1e-15  Score=117.26  Aligned_cols=166  Identities=17%  Similarity=0.216  Sum_probs=127.7

Q ss_pred             CCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceE
Q 039577           32 NLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVE  111 (282)
Q Consensus        32 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  111 (282)
                      .+..|+.|++.+|.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|+++. ++ .+..+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCcccc-Cccc--cccCccccccccccccccc-cc-cccccccccc
Confidence            46788899999888864 33 4678899999999999886 4543  5778899999999998874 44 4778899999


Q ss_pred             EEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCccc
Q 039577          112 LYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLF  191 (282)
Q Consensus       112 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  191 (282)
                      |++.++....  + ..+..++.++.+.+.++.++... ....+++|+.+++++|.++ .++. +..+++|++|++++|.+
T Consensus       117 L~l~~~~~~~--~-~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~-~i~~-l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         117 LSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCC
T ss_pred             cccccccccc--c-ccccccccccccccccccccccc-ccccccccccccccccccc-cccc-ccCCCCCCEEECCCCCC
Confidence            9999887732  3 35777888999999988876432 2226889999999999887 5543 67889999999999988


Q ss_pred             ceecCCCCCCCCCcccccccccceEEeec
Q 039577          192 SCLIPNTSGVFPNSIGNLSTSLENFYASS  220 (282)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~~~~L~~L~l~~  220 (282)
                      +        .++ .+..++ +|+.|++++
T Consensus       191 ~--------~l~-~l~~l~-~L~~L~Ls~  209 (210)
T d1h6ta2         191 S--------DLR-ALAGLK-NLDVLELFS  209 (210)
T ss_dssp             C--------BCG-GGTTCT-TCSEEEEEE
T ss_pred             C--------CCh-hhcCCC-CCCEEEccC
Confidence            6        333 366677 899999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.3e-15  Score=116.69  Aligned_cols=179  Identities=23%  Similarity=0.279  Sum_probs=133.0

Q ss_pred             EecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCC
Q 039577           40 TSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        40 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  119 (282)
                      ++..+.+.+.++.  ..+.+|+.|+++++.+. .++  .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCC-Cch--hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccc
Confidence            4444555443332  35778999999999986 454  36789999999999999884 44 467899999999999988


Q ss_pred             CCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCC
Q 039577          120 QAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTS  199 (282)
Q Consensus       120 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  199 (282)
                      +.  ++ .+..+++|+.+++.++...... ....++.++.+++++|.++ ..+ ....+++|+++++++|.+++      
T Consensus       103 ~~--l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~-~~~-~~~~l~~L~~l~l~~n~l~~------  170 (210)
T d1h6ta2         103 KD--LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQISD------  170 (210)
T ss_dssp             CC--GG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCC------
T ss_pred             cc--cc-cccccccccccccccccccccc-ccccccccccccccccccc-ccc-cccccccccccccccccccc------
Confidence            44  54 4778899999999998875332 2226889999999999886 433 45678999999999998873      


Q ss_pred             CCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeecc
Q 039577          200 GVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLG  251 (282)
Q Consensus       200 ~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~  251 (282)
                        ++ .+..++ +|++|++++|.++ .++ .+.+++        +|++|+++
T Consensus       171 --i~-~l~~l~-~L~~L~Ls~N~i~-~l~-~l~~l~--------~L~~L~Ls  208 (210)
T d1h6ta2         171 --IV-PLAGLT-KLQNLYLSKNHIS-DLR-ALAGLK--------NLDVLELF  208 (210)
T ss_dssp             --CG-GGTTCT-TCCEEECCSSCCC-BCG-GGTTCT--------TCSEEEEE
T ss_pred             --cc-cccCCC-CCCEEECCCCCCC-CCh-hhcCCC--------CCCEEEcc
Confidence              22 255677 9999999999987 444 466654        55555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.8e-15  Score=114.99  Aligned_cols=163  Identities=20%  Similarity=0.263  Sum_probs=118.3

Q ss_pred             cCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCce
Q 039577           31 GNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELV  110 (282)
Q Consensus        31 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  110 (282)
                      ..+.+++.|+++++.+.. +. .+..+++|++|++++|.++ .++  .+..+++|++|++.+|.+.. ++ .+..++.|+
T Consensus        37 ~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~-~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             HHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCcccccccc-Ccc--cccCCccccccccccccccc-cc-ccccccccc
Confidence            456788888888888763 43 4677888889999888886 444  26788888889888887663 33 467888888


Q ss_pred             EEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCcCCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcc
Q 039577          111 ELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSIYLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNL  190 (282)
Q Consensus       111 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  190 (282)
                      .|+++++....  . ..+..+++|+.+++++|.+... +....+++++.|++.+|.++ .++ .+..+++|++|++++|.
T Consensus       110 ~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~-~l~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITD--I-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVT-DLK-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCC--C-GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc--c-cccchhhhhHHhhhhhhhhccc-cccccccccccccccccccc-CCc-cccCCCCCCEEECCCCC
Confidence            99888877632  2 3466788888999888877533 22226788899999988887 544 36788899999999998


Q ss_pred             cceecCCCCCCCCCcccccccccceE
Q 039577          191 FSCLIPNTSGVFPNSIGNLSTSLENF  216 (282)
Q Consensus       191 ~~~~~~~~~~~l~~~~~~~~~~L~~L  216 (282)
                      +++        ++ .+.+++ +|++|
T Consensus       184 i~~--------i~-~l~~L~-~L~~L  199 (199)
T d2omxa2         184 VSD--------IS-VLAKLT-NLESL  199 (199)
T ss_dssp             CCC--------CG-GGGGCT-TCSEE
T ss_pred             CCC--------Cc-cccCCC-CCCcC
Confidence            763        22 355565 77765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3e-15  Score=113.66  Aligned_cols=126  Identities=21%  Similarity=0.323  Sum_probs=74.5

Q ss_pred             cCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCC
Q 039577           55 WQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNI  134 (282)
Q Consensus        55 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  134 (282)
                      ..+.+++.|+++++.+. .++  .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+..  ++ .+..++.|
T Consensus        37 ~~l~~l~~L~l~~~~i~-~l~--~l~~l~nL~~L~Ls~N~l~~-~~-~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L  108 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD--IT-PLANLTNL  108 (199)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC--CG-GGTTCTTC
T ss_pred             HHhcCCCEEECCCCCCC-Ccc--ccccCCCcCcCccccccccC-cc-cccCCccccccccccccccc--cc-cccccccc
Confidence            35677778888877775 443  35667777777777777763 23 26677777777777776632  33 35566666


Q ss_pred             cEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccc
Q 039577          135 QVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFS  192 (282)
Q Consensus       135 ~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  192 (282)
                      +.++++++......  .+ .+++|+.+++++|.+. .++ .+..+++++.|++.+|.++
T Consensus       109 ~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         109 TGLTLFNNQITDID--PLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             SEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCC
T ss_pred             cccccccccccccc--ccchhhhhHHhhhhhhhhc-ccc-ccccccccccccccccccc
Confidence            66666665554221  12 4555666666655554 332 2444555555555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=1.4e-15  Score=114.91  Aligned_cols=125  Identities=16%  Similarity=0.163  Sum_probs=61.8

Q ss_pred             EEEcCCCccccCCCccccCCCCccEEEecCCcceeeC-CccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577           14 ALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTL-PNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF   92 (282)
Q Consensus        14 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   92 (282)
                      +++.++++++ ++|+.+.  +++++|+|++|.++..+ +..+..+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeecc
Confidence            4556665554 4554442  45666666666664333 233445556666666665554 33333555555555555555


Q ss_pred             CeecccCCcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCcc
Q 039577           93 NKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNH  143 (282)
Q Consensus        93 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  143 (282)
                      |++....+..|.++++|++|++++|.++ ...+..|..+++|+++++.+|.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCC
T ss_pred             ccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCcccccccccccc
Confidence            5555333334555555555555555552 1222233344444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.59  E-value=1.6e-13  Score=112.72  Aligned_cols=97  Identities=23%  Similarity=0.239  Sum_probs=76.4

Q ss_pred             CCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEE
Q 039577           34 SFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELY  113 (282)
Q Consensus        34 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  113 (282)
                      .+++.|+++++.++ .+|..   .++|++|++++|.++ .+|. .   +.+|+.|++.+|.++ .++. +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~-~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE-L---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc-c---hhhhhhhhhhhcccc-hhhh-h--cccccccc
Confidence            46899999999987 57753   578999999999997 7876 3   468999999999877 3442 1  24699999


Q ss_pred             ecCCCCCCCCCCccccCCCCCcEEEecCccccc
Q 039577          114 LDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSG  146 (282)
Q Consensus       114 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  146 (282)
                      +++|.+..  +|. +..+++|+.+++.++.+..
T Consensus       105 L~~n~l~~--lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         105 VSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CCSSCCSS--CCC-CTTCTTCCEEECCSSCCSC
T ss_pred             cccccccc--ccc-hhhhccceeeccccccccc
Confidence            99999844  664 5778999999998887653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=7.7e-15  Score=110.74  Aligned_cols=108  Identities=27%  Similarity=0.346  Sum_probs=51.4

Q ss_pred             CccEEEcccCeecccC-CcCCcCCCCceEEEecCCCCCCCCCCccccCCCCCcEEEecCccccccCCCCc-CCCCccEEE
Q 039577           84 MLRRLSFSFNKIRGWI-PQKIGNLTELVELYLDGNNLQAGLLPSVIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLF  161 (282)
Q Consensus        84 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~  161 (282)
                      ++++|++++|.++... +..|..+++|++|++++|.+ ....+..+..+++|++|++++|.+....+..+ .+++|++|+
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i-~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeecccccc-ccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            4444444444443222 22234444455555544444 22223334444444555555544444444444 455556666


Q ss_pred             eecCcceeeccchhhCCCCCcEEeccCcccc
Q 039577          162 LWQNNLCGIVPDSICNASEVTILELSKNLFS  192 (282)
Q Consensus       162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  192 (282)
                      +++|.++...+.++..+++|+++++++|.+.
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccc
Confidence            6666555333344555566666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-16  Score=128.67  Aligned_cols=182  Identities=18%  Similarity=0.181  Sum_probs=93.9

Q ss_pred             CCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCC-CCCCCCCccccCCCCC
Q 039577           56 QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNN-LQAGLLPSVIFNSSNI  134 (282)
Q Consensus        56 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L  134 (282)
                      ...+|+.|+++++.+........+..+++|++|++.+|.+.+..+..+..+++|++|+++++. ++...+...+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            455677777776665422111145566777777777766554444455566777777776643 3111122223345677


Q ss_pred             cEEEecCccc-cccCC-CCc--CCCCccEEEeecCc--cee-eccchhhCCCCCcEEeccCcc-cceecCCCCCCCCCcc
Q 039577          135 QVIILYGNHL-SGHLR-SSI--YLPNLENLFLWQNN--LCG-IVPDSICNASEVTILELSKNL-FSCLIPNTSGVFPNSI  206 (282)
Q Consensus       135 ~~L~l~~~~~-~~~~~-~~~--~~~~L~~L~l~~~~--~~~-~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~  206 (282)
                      ++|++++|.. +.... ..+  ..+.|+.|+++++.  ++. .+......+++|++|++++|. +++.       ....+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~-------~~~~l  196 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-------CFQEF  196 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-------GGGGG
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch-------hhhhh
Confidence            7777766532 11110 111  24567777776542  221 122233456677777777653 3322       22234


Q ss_pred             cccccccceEEeecc-cceecCCccccCCccCccccccccceeeccCC
Q 039577          207 GNLSTSLENFYASSC-QLSGGIPVGFGNLSNMIKCNLESLFGLLLGGD  253 (282)
Q Consensus       207 ~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n  253 (282)
                      .+++ +|++|++++| .+++.....++++        ++|+.|+++++
T Consensus       197 ~~~~-~L~~L~L~~C~~i~~~~l~~L~~~--------~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLN-YLQHLSLSRCYDIIPETLLELGEI--------PTLKTLQVFGI  235 (284)
T ss_dssp             GGCT-TCCEEECTTCTTCCGGGGGGGGGC--------TTCCEEECTTS
T ss_pred             cccC-cCCEEECCCCCCCChHHHHHHhcC--------CCCCEEeeeCC
Confidence            4555 7777777765 4443333333332        45566666555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-15  Score=121.94  Aligned_cols=223  Identities=17%  Similarity=0.141  Sum_probs=143.3

Q ss_pred             EEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeeccc-CCcCCcCCCCceEEEecC
Q 039577           38 SLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGW-IPQKIGNLTELVELYLDG  116 (282)
Q Consensus        38 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~  116 (282)
                      .+|++++.+.......+.. .....+.+...... . +........+|++|++++|.+... +...+..+++|++|++.+
T Consensus         4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~-~-~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMD-Q-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEEC-S-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCCchHHHHHHh-ccceEeeccccccc-c-chhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            5566655543221111111 12344555554432 1 211334567899999999887633 334467789999999999


Q ss_pred             CCCCCCCCCccccCCCCCcEEEecCcc-ccccCCCCc--CCCCccEEEeecCc-cee-eccchhhC-CCCCcEEeccCcc
Q 039577          117 NNLQAGLLPSVIFNSSNIQVIILYGNH-LSGHLRSSI--YLPNLENLFLWQNN-LCG-IVPDSICN-ASEVTILELSKNL  190 (282)
Q Consensus       117 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~--~~~~L~~L~l~~~~-~~~-~~~~~l~~-~~~L~~L~l~~~~  190 (282)
                      +.+ .+..+..+...++|++|++++|. ++......+  .+++|++|++++|. ++. .+...+.. .+.|+.|+++++.
T Consensus        81 ~~l-~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          81 LRL-SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             CBC-CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             cCC-CcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            987 43344567778999999999864 432211112  57999999999874 331 22223333 4789999998763


Q ss_pred             --cceecCCCCCCCCCcccccccccceEEeecc-cceecCCccccCCccCccccccccceeeccC-Ceeeeecchhhhcc
Q 039577          191 --FSCLIPNTSGVFPNSIGNLSTSLENFYASSC-QLSGGIPVGFGNLSNMIKCNLESLFGLLLGG-DALEGQIPTCLANL  266 (282)
Q Consensus       191 --~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~-n~~~~~~~~~~~~l  266 (282)
                        +++.      .+......+| +|++|++++| .+++.....+.++        ++|++|++++ +.+++.....+.++
T Consensus       160 ~~i~~~------~l~~l~~~~~-~L~~L~L~~~~~itd~~~~~l~~~--------~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         160 KNLQKS------DLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQL--------NYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             GGSCHH------HHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGGGC--------TTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             cccccc------cccccccccc-cccccccccccCCCchhhhhhccc--------CcCCEEECCCCCCCChHHHHHHhcC
Confidence              3211      1222334566 9999999987 4665555555543        6788888988 47887777788999


Q ss_pred             CCCceeeccCccCC
Q 039577          267 TSLISLNLRSIRLN  280 (282)
Q Consensus       267 ~~L~~l~l~~n~~~  280 (282)
                      |+|+.+++++| ++
T Consensus       225 ~~L~~L~l~~~-~~  237 (284)
T d2astb2         225 PTLKTLQVFGI-VP  237 (284)
T ss_dssp             TTCCEEECTTS-SC
T ss_pred             CCCCEEeeeCC-CC
Confidence            99999999987 44

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=2.1e-16  Score=130.50  Aligned_cols=249  Identities=18%  Similarity=0.187  Sum_probs=146.1

Q ss_pred             CCccccCCCCccEEEecCCcceee----CCccccCCCCCcEEEcCCCcccccCCC----------CccCCCCCccEEEcc
Q 039577           26 IPPHIGNLSFLVSLTSVAKSFYGT----LPNELWQLQRLRIVDLSSGIIPGSLPD----------DTSGDCIMLRRLSFS   91 (282)
Q Consensus        26 ~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~----------~~~~~l~~L~~L~l~   91 (282)
                      +...+.....|+.|+|++|.+...    +...+...++|+.++++++... ....          ..+...++|++|+++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-SCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccc-ccccccchHHHHHHHHHhhCCCccccccc
Confidence            344555667788888887766432    2334556677888887766432 1110          023456778888887


Q ss_pred             cCeeccc----CCcCCcCCCCceEEEecCCCCCCCC---CCcc---------ccCCCCCcEEEecCccccccCCC----C
Q 039577           92 FNKIRGW----IPQKIGNLTELVELYLDGNNLQAGL---LPSV---------IFNSSNIQVIILYGNHLSGHLRS----S  151 (282)
Q Consensus        92 ~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~---------~~~~~~L~~L~l~~~~~~~~~~~----~  151 (282)
                      +|.+...    +...+...+.|++|++++|.+....   +...         ....+.|+.+.+..+.+......    .
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            7776532    1222335677888888777651100   0000         12345677788777765422211    1


Q ss_pred             c-CCCCccEEEeecCcceee-----ccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeeccccee
Q 039577          152 I-YLPNLENLFLWQNNLCGI-----VPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSG  225 (282)
Q Consensus       152 ~-~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~  225 (282)
                      + ..+.++.+++++|.+...     +...+...++|++|++++|.++....   ..+...+...+ +|++|++++|.+++
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~---~~L~~~l~~~~-~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS---SALAIALKSWP-NLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH---HHHHHHGGGCT-TCCEEECTTCCCCH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccc---ccccccccccc-cchhhhhhcCccCc
Confidence            1 467788888888877521     23345667788888888887763311   12333455566 88888888888764


Q ss_pred             cCCccccCCccCccccccccceeeccCCeeeeecc----hhhh-ccCCCceeeccCccCCC
Q 039577          226 GIPVGFGNLSNMIKCNLESLFGLLLGGDALEGQIP----TCLA-NLTSLISLNLRSIRLNS  281 (282)
Q Consensus       226 ~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~----~~~~-~l~~L~~l~l~~n~~~~  281 (282)
                      .....++.  .+.....+.+++|++++|.++....    ..+. ++++|+.+++++|+|+.
T Consensus       258 ~g~~~l~~--~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         258 RGAAAVVD--AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHH--HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhHHHHH--HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            32222211  0111112568888999888875432    3332 56789999999988864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.5e-16  Score=135.70  Aligned_cols=107  Identities=15%  Similarity=0.114  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCccccC-CCccccCCCCccEEEecCCccee----eCCccccCCCCCcEEEcCCCccccc----CCCCcc-C
Q 039577           11 RVTALSLPNLTLGGT-IPPHIGNLSFLVSLTSVAKSFYG----TLPNELWQLQRLRIVDLSSGIIPGS----LPDDTS-G   80 (282)
Q Consensus        11 ~l~~l~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~-~   80 (282)
                      .++.||++++.+++. +.+.+..++++++|+|.+|.++.    .+...+..+++|+.|++++|.+++.    +.. .+ .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~-~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH-HHhc
Confidence            567777777777542 22234456677777777776652    1333455667777777777766421    111 11 1


Q ss_pred             CCCCccEEEcccCeeccc----CCcCCcCCCCceEEEecCCC
Q 039577           81 DCIMLRRLSFSFNKIRGW----IPQKIGNLTELVELYLDGNN  118 (282)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~  118 (282)
                      ...+|++|++++|.++..    ++..+..++.|++|++++|.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            234577777777766532    23345556677777776664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.5e-13  Score=100.35  Aligned_cols=123  Identities=21%  Similarity=0.253  Sum_probs=53.3

Q ss_pred             CCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEecCCCCCCCCCCc-cccCCCCC
Q 039577           56 QLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYLDGNNLQAGLLPS-VIFNSSNI  134 (282)
Q Consensus        56 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L  134 (282)
                      ++.++++|++++|.++ .++. .+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.  ++. .+..+++|
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~--l~~~~~~~l~~L   89 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDL   89 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTC
T ss_pred             CcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccC--CCcccccccccc
Confidence            4444555555555543 3332 33344455555555554442 2 224444555555555554421  221 12234444


Q ss_pred             cEEEecCccccccCC-CCc-CCCCccEEEeecCcceeeccc----hhhCCCCCcEEe
Q 039577          135 QVIILYGNHLSGHLR-SSI-YLPNLENLFLWQNNLCGIVPD----SICNASEVTILE  185 (282)
Q Consensus       135 ~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~  185 (282)
                      ++|++++|.+..... ..+ .+++|+.+++++|.++ ..|.    .+..+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            444444444332211 112 3455555555555554 3331    244455555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=100.44  Aligned_cols=125  Identities=20%  Similarity=0.143  Sum_probs=64.0

Q ss_pred             ccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeecccCCcC-CcCCCC
Q 039577           30 IGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQK-IGNLTE  108 (282)
Q Consensus        30 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~  108 (282)
                      +.+..+++.|++++|.+. .++..+..+++|+.|++++|.+. .++  .+..+++|++|++++|.+.. ++.. +..++.
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICR-IGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccC-CCccccccccc
Confidence            344455566666665554 23433344556666666666554 333  24555566666666666553 3322 334556


Q ss_pred             ceEEEecCCCCCCCCCC--ccccCCCCCcEEEecCccccccCC---CCc-CCCCccEEE
Q 039577          109 LVELYLDGNNLQAGLLP--SVIFNSSNIQVIILYGNHLSGHLR---SSI-YLPNLENLF  161 (282)
Q Consensus       109 L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~-~~~~L~~L~  161 (282)
                      |++|++++|.++.  ++  ..+..+++|+++++.+|.+.....   ..+ .+++|+.|+
T Consensus        89 L~~L~L~~N~i~~--~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccc--cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6666666665532  22  234455666666666665543321   112 456666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=8.1e-13  Score=91.90  Aligned_cols=100  Identities=23%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCcceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEccc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSF   92 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~   92 (282)
                      |.|++++|+++ .++ .+..+++|++|++++|.+. .+|+.+..+++|+.|++++|.+. .++  .+..+++|+++++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeEECCC
Confidence            35677777775 333 3666777777777777765 46666667777777777777765 444  356666777777776


Q ss_pred             CeecccCC--cCCcCCCCceEEEecCCCC
Q 039577           93 NKIRGWIP--QKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        93 ~~~~~~~~--~~~~~l~~L~~L~l~~~~~  119 (282)
                      |.+.. ++  ..+..+++|+.|++++|.+
T Consensus        75 N~i~~-~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          75 NRLQQ-SAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SCCCS-SSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CccCC-CCCchhhcCCCCCCEEECCCCcC
Confidence            66653 22  2355566666666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.7e-13  Score=94.42  Aligned_cols=116  Identities=21%  Similarity=0.215  Sum_probs=78.7

Q ss_pred             cEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCccccccccc
Q 039577          135 QVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSL  213 (282)
Q Consensus       135 ~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L  213 (282)
                      +.|++++|.++... . + .+.+|++|++++|.++ .+|..+..+++|++|++++|.++        .+| .+..++ +|
T Consensus         1 R~L~Ls~n~l~~l~-~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~--------~l~-~~~~l~-~L   67 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--------NVD-GVANLP-RL   67 (124)
T ss_dssp             SEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--------CCG-GGTTCS-SC
T ss_pred             CEEEcCCCCCCCCc-c-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc--------ccC-cccccc-cc
Confidence            46778888876442 2 4 6788888888888887 77777778888888888888876        233 355666 88


Q ss_pred             ceEEeecccceecCCc--cccCCccCccccccccceeeccCCeeeee---cchhhhccCCCcee
Q 039577          214 ENFYASSCQLSGGIPV--GFGNLSNMIKCNLESLFGLLLGGDALEGQ---IPTCLANLTSLISL  272 (282)
Q Consensus       214 ~~L~l~~n~~~~~~~~--~~~~l~~l~~l~l~~l~~L~l~~n~~~~~---~~~~~~~l~~L~~l  272 (282)
                      ++|++++|.+. .++.  .+..        +++|+.|++++|.+++.   .......+|+|+.+
T Consensus        68 ~~L~l~~N~i~-~~~~~~~l~~--------~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          68 QELLLCNNRLQ-QSAAIQPLVS--------CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CEEECCSSCCC-SSSTTGGGGG--------CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CeEECCCCccC-CCCCchhhcC--------CCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            88888888876 3332  2333        36778888888887632   12234456777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-15  Score=129.66  Aligned_cols=139  Identities=17%  Similarity=0.138  Sum_probs=68.3

Q ss_pred             CCCCcEEEecCccccccCC----CCc-CCCCccEEEeecCcceeeccc----hhh-CCCCCcEEeccCcccceecCCCCC
Q 039577          131 SSNIQVIILYGNHLSGHLR----SSI-YLPNLENLFLWQNNLCGIVPD----SIC-NASEVTILELSKNLFSCLIPNTSG  200 (282)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~~~~~~~----~l~-~~~~L~~L~l~~~~~~~~~~~~~~  200 (282)
                      ...++.+++++|.+.....    ..+ ..+.++.+++++|.+......    .+. ....|+.++++++.++....   .
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~---~  330 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC---S  330 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH---H
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhh---h
Confidence            3467888888776642211    111 356677777777666422111    111 23456777777666553211   1


Q ss_pred             CCCCcccccccccceEEeecccceecCC----ccccCCccCccccccccceeeccCCeeeee----cchhhhccCCCcee
Q 039577          201 VFPNSIGNLSTSLENFYASSCQLSGGIP----VGFGNLSNMIKCNLESLFGLLLGGDALEGQ----IPTCLANLTSLISL  272 (282)
Q Consensus       201 ~l~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~----~~~~~~~l~~L~~l  272 (282)
                      .+...+...+ +|++|++++|.+++...    ..+.+.       .+.|++|++++|.+++.    +++.+..+++|++|
T Consensus       331 ~l~~~~~~~~-~L~~L~Ls~N~i~~~g~~~l~~~l~~~-------~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         331 HFSSVLAQNR-FLLELQISNNRLEDAGVRELCQGLGQP-------GSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             HHHHHHHHCS-SCCEEECCSSBCHHHHHHHHHHHHTST-------TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             hccccccccc-chhhhheeeecccCcccchhhhhhhcc-------cCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEE
Confidence            1222222333 67777777766653211    111110       13455666666666532    23344455666666


Q ss_pred             eccCccCC
Q 039577          273 NLRSIRLN  280 (282)
Q Consensus       273 ~l~~n~~~  280 (282)
                      ++++|+|+
T Consensus       403 ~Ls~N~i~  410 (460)
T d1z7xw1         403 DLSNNCLG  410 (460)
T ss_dssp             ECCSSSCC
T ss_pred             ECCCCcCC
Confidence            66666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=6e-15  Score=121.57  Aligned_cols=243  Identities=16%  Similarity=0.139  Sum_probs=161.1

Q ss_pred             CCceEEEEcCCCccccC----CCccccCCCCccEEEecCCcceee----------CCccccCCCCCcEEEcCCCcccccC
Q 039577            9 HRRVTALSLPNLTLGGT----IPPHIGNLSFLVSLTSVAKSFYGT----------LPNELWQLQRLRIVDLSSGIIPGSL   74 (282)
Q Consensus         9 ~~~l~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----------~~~~l~~l~~L~~L~l~~~~~~~~~   74 (282)
                      ...+++|++++|.+...    +...+...++|+.+++.++.....          +...+..+++|+.|++++|.+....
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            46799999999987532    344567789999999987654311          2234556899999999999875321


Q ss_pred             CC---CccCCCCCccEEEcccCeecccCCc-------------CCcCCCCceEEEecCCCCCCCC---CCccccCCCCCc
Q 039577           75 PD---DTSGDCIMLRRLSFSFNKIRGWIPQ-------------KIGNLTELVELYLDGNNLQAGL---LPSVIFNSSNIQ  135 (282)
Q Consensus        75 ~~---~~~~~l~~L~~L~l~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~  135 (282)
                      ..   ..+...++|++|++++|.+......             .....+.|+.+.++++.+....   +...+.....++
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence            11   0334678999999999876521100             1124578999999998873221   222345678899


Q ss_pred             EEEecCcccccc-----CCCCc-CCCCccEEEeecCccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCc
Q 039577          136 VIILYGNHLSGH-----LRSSI-YLPNLENLFLWQNNLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNS  205 (282)
Q Consensus       136 ~L~l~~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  205 (282)
                      .|+++.|.+...     ....+ ..++|+.|++++|.++.    .+...+..+++|++|++++|.+++....   .+...
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~---~l~~~  266 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA---AVVDA  266 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH---HHHHH
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH---HHHHH
Confidence            999999987532     12223 67899999999998763    2345567889999999999998753211   12222


Q ss_pred             cccc-ccccceEEeecccceecCCccccCCccCccccccccceeeccCCeeee
Q 039577          206 IGNL-STSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDALEG  257 (282)
Q Consensus       206 ~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~  257 (282)
                      +... ...|++|++++|.++......+...  ++ -..++|+.|++++|.+..
T Consensus       267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~--l~-~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIELDAVRTLKTV--ID-EKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHH--HH-HHCTTCCEEECTTSBSCT
T ss_pred             hhhccCCCCCEEECCCCcCChHHHHHHHHH--HH-ccCCCCCEEECCCCcCCC
Confidence            2221 1279999999998874332222211  10 013679999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=3.6e-13  Score=101.76  Aligned_cols=125  Identities=22%  Similarity=0.240  Sum_probs=59.0

Q ss_pred             cccCCCCCcEEEecCccccccCCCCc-CCCCccEEEeecCcceeeccchhhCCCCCcEEeccCcccceecCCCCCCCCCc
Q 039577          127 VIFNSSNIQVIILYGNHLSGHLRSSI-YLPNLENLFLWQNNLCGIVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNS  205 (282)
Q Consensus       127 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  205 (282)
                      .+..+.+|++|++++|.+... + .+ .+++|+.|++++|.++ .++.....+++|++|++++|.++.        ++ .
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~--------l~-~  110 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--------LS-G  110 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC--------HH-H
T ss_pred             HHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccccccccc--------cc-c
Confidence            344445555555555544422 1 12 4455555555555554 444333333455566665555541        11 2


Q ss_pred             ccccccccceEEeecccceecCC--ccccCCccCccccccccceeeccCCeeeeecch----------hhhccCCCceee
Q 039577          206 IGNLSTSLENFYASSCQLSGGIP--VGFGNLSNMIKCNLESLFGLLLGGDALEGQIPT----------CLANLTSLISLN  273 (282)
Q Consensus       206 ~~~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~----------~~~~l~~L~~l~  273 (282)
                      +..++ +|+.|++++|.++. ++  ..+..        +++|+.|++++|.+....+.          .+..+|+|+.||
T Consensus       111 ~~~l~-~L~~L~L~~N~i~~-~~~~~~l~~--------l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         111 IEKLV-NLRVLYMSNNKITN-WGEIDKLAA--------LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHH-HSSEEEESEEECCC-HHHHHHHTT--------TTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccc-cccccccccchhcc-ccccccccC--------CCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            33444 56666666655541 11  11222        24555566666655432221          245667777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.7e-10  Score=82.19  Aligned_cols=104  Identities=22%  Similarity=0.144  Sum_probs=74.6

Q ss_pred             EEEEcCCCccccCCCccccCCCCccEEEecCCc-ceeeCCccccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcc
Q 039577           13 TALSLPNLTLGGTIPPHIGNLSFLVSLTSVAKS-FYGTLPNELWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFS   91 (282)
Q Consensus        13 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~   91 (282)
                      ..++..++++. ..|..+..+++|+.|++.++. +...-+..|..+++|+.|++++|.+. .++...|..+++|++|+++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccccccccceecc
Confidence            34677776664 456667778888888887654 55433456777888888888888886 6665577888888888888


Q ss_pred             cCeecccCCcCCcCCCCceEEEecCCCC
Q 039577           92 FNKIRGWIPQKIGNLTELVELYLDGNNL  119 (282)
Q Consensus        92 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~  119 (282)
                      +|++. .++........|++|++++|.+
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCcc
Confidence            88887 4555544455688888887766

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=8.8e-13  Score=99.55  Aligned_cols=40  Identities=28%  Similarity=0.272  Sum_probs=16.1

Q ss_pred             ccCCCCCcEEEcCCCcccccCCCCccCCCCCccEEEcccCeec
Q 039577           54 LWQLQRLRIVDLSSGIIPGSLPDDTSGDCIMLRRLSFSFNKIR   96 (282)
Q Consensus        54 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   96 (282)
                      +..+++|+.|++++|.+. .++  .+..+++|++|++++|.+.
T Consensus        44 l~~L~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHTTTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEEEEC
T ss_pred             HhcccccceeECcccCCC-Ccc--cccCCccccChhhcccccc
Confidence            333444444444444443 222  1333444444444444433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.2e-09  Score=78.63  Aligned_cols=105  Identities=19%  Similarity=0.129  Sum_probs=53.4

Q ss_pred             ccEEEecCCcceeeCCccccCCCCCcEEEcCCCc-ccccCCCCccCCCCCccEEEcccCeecccCCcCCcCCCCceEEEe
Q 039577           36 LVSLTSVAKSFYGTLPNELWQLQRLRIVDLSSGI-IPGSLPDDTSGDCIMLRRLSFSFNKIRGWIPQKIGNLTELVELYL  114 (282)
Q Consensus        36 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  114 (282)
                      .++++..++... ..|..+..+++|+.|++.++. ++ .++...|..+++|+.|++++|.+...-+..|..+++|++|++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            344555544443 345555556666666665443 43 444435556666666666666655433444555666666666


Q ss_pred             cCCCCCCCCCCccccCCCCCcEEEecCccc
Q 039577          115 DGNNLQAGLLPSVIFNSSNIQVIILYGNHL  144 (282)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  144 (282)
                      ++|.++.  ++........|++|++.+|.+
T Consensus        88 s~N~l~~--l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALES--LSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCSC--CCSTTTCSCCCCEEECCSSCC
T ss_pred             cCCCCcc--cChhhhccccccccccCCCcc
Confidence            6665532  333222222344444444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.9e-07  Score=67.30  Aligned_cols=84  Identities=20%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             hCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCCccccCCccCccccccccceeeccCCee
Q 039577          176 CNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIPVGFGNLSNMIKCNLESLFGLLLGGDAL  255 (282)
Q Consensus       176 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~l~l~~l~~L~l~~n~~  255 (282)
                      ..++.|++|++++|.++..     ..++..+..++ +|+.|++++|.+. .++. +..      +...++++|++++|.+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l-----~~~~~~~~~l~-~L~~L~Ls~N~i~-~l~~-l~~------l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRL-----DDMSSIVQKAP-NLKILNLSGNELK-SERE-LDK------IKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCC-----SGGGTHHHHST-TCCCCCCTTSCCC-CGGG-HHH------HTTCCCSSCCCTTSTT
T ss_pred             HhCCCCCEeeCCCccccCC-----chhHHHHhhCC-cccccccccCccc-cchh-hhh------hhccccceeecCCCCc
Confidence            3456677777777766522     12233344455 6777777777665 2221 111      1123466677777766


Q ss_pred             eeecc-------hhhhccCCCceee
Q 039577          256 EGQIP-------TCLANLTSLISLN  273 (282)
Q Consensus       256 ~~~~~-------~~~~~l~~L~~l~  273 (282)
                      .+...       ..+..+|+|+.||
T Consensus       128 ~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         128 SDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CcCcccchhHHHHHHHHCCCCCEEC
Confidence            54322       2245567777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=2.1e-06  Score=61.88  Aligned_cols=116  Identities=12%  Similarity=0.093  Sum_probs=57.9

Q ss_pred             CCCccEEEeecC-ccee----eccchhhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC
Q 039577          154 LPNLENLFLWQN-NLCG----IVPDSICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP  228 (282)
Q Consensus       154 ~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~  228 (282)
                      .+.|++|+++++ .+..    .+...+...+.|++|++++|.+......   .+...+...+ .|++|++++|.++....
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~---~la~~L~~n~-~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR---GLIELIETSP-SLRVLNVESNFLTPELL   89 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT---THHHHHHHCS-SCCEEECCSSBCCHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHH---HHhhhhhhcc-cccceeeehhhcchHHH
Confidence            355666666543 2321    1223445556677777777766532211   2223333444 67777777776653222


Q ss_pred             cccc-CCccCccccccccceeeccCCeeee---e----cchhhhccCCCceeeccCcc
Q 039577          229 VGFG-NLSNMIKCNLESLFGLLLGGDALEG---Q----IPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       229 ~~~~-~l~~l~~l~l~~l~~L~l~~n~~~~---~----~~~~~~~l~~L~~l~l~~n~  278 (282)
                      ..+. .+..     .++|++|++++|....   .    +...+...++|+.++++.+.
T Consensus        90 ~~l~~aL~~-----n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          90 ARLLRSTLV-----TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHTTT-----TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHh-----CCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            1111 1111     1456666666654331   1    23445556777777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=1.5e-05  Score=56.88  Aligned_cols=65  Identities=20%  Similarity=0.051  Sum_probs=47.7

Q ss_pred             ccccccceEEeecccceecC--CccccCCccCccccccccceeeccCCeeeeecchhhhccCCCceeeccCccCCC
Q 039577          208 NLSTSLENFYASSCQLSGGI--PVGFGNLSNMIKCNLESLFGLLLGGDALEGQIPTCLANLTSLISLNLRSIRLNS  281 (282)
Q Consensus       208 ~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~l~~l~l~~l~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~~~~  281 (282)
                      .++ .|++|++++|+++...  +..+..        +++|+.|++++|.+++.-+-.+.....|+++++++|.++.
T Consensus        63 ~~~-~L~~L~Ls~N~i~~l~~~~~~~~~--------l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIP-ELLSLNLSNNRLYRLDDMSSIVQK--------APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCT-TCCCCCCCSSCCCCCSGGGTHHHH--------STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCC-CCCEeeCCCccccCCchhHHHHhh--------CCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            456 8999999999998421  122223        3789999999999995433344456789999999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=4.2e-06  Score=60.26  Aligned_cols=14  Identities=36%  Similarity=0.323  Sum_probs=6.3

Q ss_pred             CCccEEEeecCcce
Q 039577          155 PNLENLFLWQNNLC  168 (282)
Q Consensus       155 ~~L~~L~l~~~~~~  168 (282)
                      +.|++|++++|.+.
T Consensus        72 ~~L~~L~L~~n~i~   85 (167)
T d1pgva_          72 PSLRVLNVESNFLT   85 (167)
T ss_dssp             SSCCEEECCSSBCC
T ss_pred             ccccceeeehhhcc
Confidence            34444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.17  E-value=1.9e-05  Score=56.61  Aligned_cols=92  Identities=13%  Similarity=0.093  Sum_probs=41.1

Q ss_pred             hhCCCCCcEEeccCcccceecCCCCCCCCCcccccccccceEEeecccceecCC----ccccCCccCccccccccce--e
Q 039577          175 ICNASEVTILELSKNLFSCLIPNTSGVFPNSIGNLSTSLENFYASSCQLSGGIP----VGFGNLSNMIKCNLESLFG--L  248 (282)
Q Consensus       175 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~~l~l~~l~~--L  248 (282)
                      +...+.|++|++++|.++....   ..+...+...+ .++.+++++|.++....    ..+...        ++++.  |
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~---~~L~~~l~~~~-~l~~l~l~~~~~~~~g~~~l~~~l~~~--------~~L~~l~L  109 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVA---FALAEMLKVNN-TLKSLNVESNFISGSGILALVEALQSN--------TSLIELRI  109 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHH---HHHHHHHHHCS-SCCEEECCSSCCCHHHHHHHHHGGGGC--------SSCCEEEC
T ss_pred             HhcCCccCeeeccCCcccHHHH---HHHHHHHhhcc-cchhhhhccccccchhHHHHHHHHHhC--------ccccEEee
Confidence            3445556666666665543211   11222233333 56666666655442211    112221        33433  2


Q ss_pred             eccCCeeeee----cchhhhccCCCceeeccCcc
Q 039577          249 LLGGDALEGQ----IPTCLANLTSLISLNLRSIR  278 (282)
Q Consensus       249 ~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~  278 (282)
                      ++++|.+.+.    +...+...+.|+.++++++.
T Consensus       110 ~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         110 DNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            3334555432    23344556677777766554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.03  E-value=0.00011  Score=52.36  Aligned_cols=17  Identities=18%  Similarity=0.229  Sum_probs=8.2

Q ss_pred             hCCCCCcEEeccCcccc
Q 039577          176 CNASEVTILELSKNLFS  192 (282)
Q Consensus       176 ~~~~~L~~L~l~~~~~~  192 (282)
                      ...++++.+++.+|.+.
T Consensus        71 ~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          71 KVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHCSSCCEEECCSSCCC
T ss_pred             hhcccchhhhhcccccc
Confidence            33445555555555443