Citrus Sinensis ID: 039582

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEEVEGK
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEcccccccccccccccccHHHHHHHHcccccEEEEEEcccccHHEEEcccEEEEEccEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccEEEEEccccHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEEccccccccHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccEEcccEEEEccccEEEEEEEEEEccccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccHcEEEEEEccccccccccccccccccHHHHHHHHHHccEEEEEEEccccccEEEEEcccEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccccccEEEEEEEccccccccccccEEEEEEccccHHHHHHHcccccccHHHHHHHcccHHcccccEEcccccccccccccccccccEEEEEEccccccEEEEEEEcccccccccHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccEEccEEEEEcccccEEEEEEEEEccccccccccccccccccccHcccccc
Coil and Loop (DISEMBL)
malpvsaigfegyekrlevsffepgvfadpggrglrsLSKHQLDeilkpaectivsslsnehldsyvlsesslfvypYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTrgsfifagaqpfphrsfsEEVAVLDghfgkfgmdstafvmgspdntkrwHVYSAsaeagshvnpvytLEMCMTGLDRKRASVFYKTNESSVAlmtedsgirkilpkseicdfefdpcgysmnsiegdavstihvtpedgfsyasfeavgydfevvKLTPLLERVLAcfkpaefsvalhsdivgdehgdtfmldlkgyscGEKIYEELGNNGSLIYYSfsradcstsprsilkccwsedekdeevegk
Flexible Loop (DISEMBL)
malpvsaigfegyEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASaeagshvnpvYTLEMCMTGLDRKRASVFYKtnessvalmtedsgirkilpkseICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILkccwsedekdeevegk
Low Complexity Region (SEG)
MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIlklseslslsVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEEVEGK
Disordered region (IsUnstruct)
******AIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW************
Disordered Region (DISOPRED)
****VSAIGFEGYEKRLEVSFFEPG*********LRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILK*CW************
Disordered Region (DISEMBL)
MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWS***********
Disordered Region (DISPRO)
*******IGFEGYEKRLEVSFFEPGVF****GRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADC************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEEVEGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q42679	357	S-adenosylmethionine deca	N/A	no	0.988	1.0	0.722	1e-151
Q96471	362	S-adenosylmethionine deca	N/A	no	0.997	0.994	0.686	1e-147
Q9M6K1	362	S-adenosylmethionine deca	N/A	no	0.997	0.994	0.681	1e-145
O80402	361	S-adenosylmethionine deca	N/A	no	0.966	0.966	0.716	1e-144
Q04694	360	S-adenosylmethionine deca	N/A	no	0.966	0.969	0.710	1e-144
O04009	361	S-adenosylmethionine deca	N/A	no	0.963	0.963	0.715	1e-144
Q96555	362	S-adenosylmethionine deca	N/A	no	0.966	0.964	0.699	1e-142
Q38IY3	358	S-adenosylmethionine deca	N/A	no	0.966	0.974	0.702	1e-142
O65354	361	S-adenosylmethionine deca	N/A	no	0.977	0.977	0.688	1e-139
Q9M4D8	353	S-adenosylmethionine deca	N/A	no	0.977	1.0	0.671	1e-138

>sp|Q42679|DCAM_CATRO S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1

 Score =  534 bits (1375), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/357 (72%), Positives = 294/357 (82%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SLSN
Sbjct: 1   MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           ++LDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIPAILKL+ESLSLSVR+V+YTRGSFIF
Sbjct: 61  QYLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAILKLAESLSLSVRNVKYTRGSFIF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQ FPHRSFSEEV +LD +FGK G++S AF+MG+PD  ++WHVYSAS  +    +P Y
Sbjct: 121 PGAQSFPHRSFSEEVELLDNYFGKLGLESNAFIMGNPDQPQKWHVYSASVGSEQSSDPTY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDR++ASVFYK+  SS ALMT  SGIRKILP SEICDFEFDPCGYSMNSIE 
Sbjct: 181 TLEMCMTGLDREKASVFYKSESSSAALMTTRSGIRKILPDSEICDFEFDPCGYSMNSIEE 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            A+STIHVTPEDGFSYASFEA GYD +   L  ++ERVLACF+P+EFSVA+H D+     
Sbjct: 241 AAISTIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACFQPSEFSVAVHCDVTCKSL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEE 357
                L+LK YS  EKI EELG  GS+IY  F R D   SPRSILKCCW EDE +EE
Sbjct: 301 EQICSLELKEYSLDEKINEELGLGGSIIYKKFLRIDACGSPRSILKCCWKEDESEEE 357

Catharanthus roseus (taxid: 4058)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 0

>sp|Q96471|DCAM_IPONI S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1

 Score =  522 bits (1345), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/361 (68%), Positives = 298/361 (82%), Gaps = 1/361 (0%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MAL  SAIGFEGYEKRLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN
Sbjct: 1   MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
             +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP IL+L++ LSL V+SV+YTRGSF F
Sbjct: 61  NEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPILELADGLSLKVKSVKYTRGSFNF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
              QP+PHR+FSEEVA+LDG+FGK G  S A+VMG     ++WHVYSASAE+  +  P+Y
Sbjct: 121 PEVQPYPHRNFSEEVAILDGYFGKLGTGSKAYVMGGAGKQQQWHVYSASAESAENTFPIY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLD+K ASVF+KT  SS A+MT+ SGIRKILP S+ICDF+F+PCGYSMN++EG
Sbjct: 181 TLEMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSDICDFDFEPCGYSMNAVEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
             +STIHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++ 
Sbjct: 241 GTISTIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEEVEG 360
              F LD+KGY+CGE+ YE LG  GS++Y  F+      SPRS L CCWSE+E D+E E 
Sbjct: 301 DSVFELDVKGYACGERSYEALGKGGSIMYCGFTSTGSCGSPRSTLLCCWSENE-DQEGEK 359

Query: 361 K 361
           K
Sbjct: 360 K 360

Ipomoea nil (taxid: 35883)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q9M6K1|DCAM_IPOBA S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1

 Score =  514 bits (1324), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/361 (68%), Positives = 294/361 (81%), Gaps = 1/361 (0%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MAL  SAIGFEGYE RLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN
Sbjct: 1   MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
             +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP IL+L++ LSL V+SV+YTRGSF F
Sbjct: 61  NEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPILELADGLSLKVKSVKYTRGSFNF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
              QP+PHR+FSEEVA+LD +FGK    S A+VMG     ++WHVYSASAE+  +  P+Y
Sbjct: 121 PEVQPYPHRNFSEEVAILDSYFGKLSTGSKAYVMGGAGKQQQWHVYSASAESAENTFPIY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLD+K ASVF+KT  SS A+MT+ SGIRKILP SEICDF+F+PCGYSMN++EG
Sbjct: 181 TLEMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSEICDFDFEPCGYSMNAVEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            A+S IHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++ 
Sbjct: 241 GAISPIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEEVEG 360
              F LD+KGY+CGE+ YE L   GS++Y  F+      SPRS L CCWSE+E DEE E 
Sbjct: 301 DSVFKLDVKGYACGERSYEGLNKGGSIMYCGFTSTGSCGSPRSTLLCCWSENE-DEEGEK 359

Query: 361 K 361
           K
Sbjct: 360 K 360

Ipomoea batatas (taxid: 4120)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|O80402|DCAM_NICSY S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1

 Score =  511 bits (1317), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/349 (71%), Positives = 285/349 (81%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN
Sbjct: 3   MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSN 62

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           + +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP ILKL+E+LSL V+ VRYTRGSFIF
Sbjct: 63  DDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYTRGSFIF 122

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD  ++WHVYSASA      +PVY
Sbjct: 123 PGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPVY 182

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDR++ASVFYKT  SS A MT  SGIRKILP SEICDFEF+PCGYSMNSIEG
Sbjct: 183 TLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEG 242

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+     
Sbjct: 243 AALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLL 302

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 349
                +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct: 303 ERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351

Nicotiana sylvestris (taxid: 4096)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q04694|DCAM_SOLTU S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1

 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/349 (71%), Positives = 289/349 (82%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN
Sbjct: 3   MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSN 62

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           +++DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP IL+L+E+LSL V+ VRYTRGSFIF
Sbjct: 63  DYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIF 122

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD T++WHVYSASA +    +PVY
Sbjct: 123 PGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGSVQSNDPVY 182

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDR++ASVFYKT ESS A MT  SGIRKILPKSEICDFEF+PCGYSMNSIEG
Sbjct: 183 TLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEG 242

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            AVSTIH+TPEDGF+YASFE+VGY+ + ++L PL+ERVLACF+PAEFSVALH+D+     
Sbjct: 243 AAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLL 302

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 349
                +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct: 303 ERICSVDVKGYSLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCW 351

Solanum tuberosum (taxid: 4113)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|O04009|DCAM_TOBAC S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1

 Score =  509 bits (1312), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/348 (71%), Positives = 284/348 (81%)

Query: 2   ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNE 61
           ALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+
Sbjct: 4   ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSND 63

Query: 62  HLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFA 121
            +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP ILKL+E+LSL V+ VRYTRGSFIF 
Sbjct: 64  DVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYTRGSFIFP 123

Query: 122 GAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYT 181
           GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD  ++WHVYSASA      +PVYT
Sbjct: 124 GAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPVYT 183

Query: 182 LEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGD 241
           LEMCMTGLDR++ASVFYKT  SS A MT  SGIRKILP SEICDFEF+PCGYSMNSIEG 
Sbjct: 184 LEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGA 243

Query: 242 AVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHG 301
           A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+      
Sbjct: 244 ALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLLE 303

Query: 302 DTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 349
               +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct: 304 RVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351

Nicotiana tabacum (taxid: 4097)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q96555|DCAM_DATST S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1

 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/349 (69%), Positives = 286/349 (81%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           M LPVSAIGFEG+EKRLE+SF EPG+F+DP G+GLRSLSK QLDEIL PAECTIV +LSN
Sbjct: 3   MDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNLSN 62

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           +++DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP IL+L+E+LSL V+ VRYTRGSFIF
Sbjct: 63  DYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIF 122

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQ FPHR FSEEVAVLDG+FGK    S A +MG+PD T++WHVYSASA      +PVY
Sbjct: 123 PGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYSASAGPVQSNDPVY 182

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDR++ASVFYKT  SS A MT  SGIRKILP SEICDFEF+PCGYSMNSIEG
Sbjct: 183 TLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEG 242

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            AVSTIH+TPEDGFSYASFE+VGYD + ++L PL+ERVLACF+PAEFS+ALH+D+     
Sbjct: 243 AAVSTIHITPEDGFSYASFESVGYDLKTMELGPLVERVLACFEPAEFSIALHADVATKLL 302

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 349
                +D+KGYS  E   EE G  GS++Y  F++     SP+S+LK CW
Sbjct: 303 ERVCCVDVKGYSLAEWSPEEFGKGGSIVYQKFTKTPYCASPKSVLKGCW 351

Datura stramonium (taxid: 4076)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q38IY3|DCAM_SOLCI S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1

 Score =  504 bits (1298), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/349 (70%), Positives = 285/349 (81%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSL+K QLDEIL PAECTIV +LSN
Sbjct: 1   MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           +++DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP IL+L+E+LSL V+ VRYTRGSFIF
Sbjct: 61  DYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQ FPHR FSEEVAVLDG+FGK    S A +MG+PD T++WHVYSASA      +PVY
Sbjct: 121 PGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYSASAGTVQCNDPVY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCM GLDR++ASVFYKT ESS A MT  SGIRKILPK EICDFEF+PCGYSMNSIEG
Sbjct: 181 TLEMCMAGLDREKASVFYKTEESSAAHMTVRSGIRKILPKFEICDFEFEPCGYSMNSIEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            AVSTIH+TPEDGFSYASFE+VGYD +  +L PL+ERVLACF+PAEFS+ALH+D+     
Sbjct: 241 AAVSTIHITPEDGFSYASFESVGYDPKTTELGPLVERVLACFEPAEFSIALHADVATKLL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 349
                +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct: 301 ERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPYCESPKSVLKGCW 349

Solanum chilense (taxid: 4083)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|O65354|DCAM_HELAN S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1

 Score =  494 bits (1272), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/360 (68%), Positives = 293/360 (81%), Gaps = 7/360 (1%)

Query: 5   VSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLD 64
            SAIGFEG+EKRLE+SFF PG   DP  RGLRSL+K+QLD+ L PAECTIVSSLSN+ LD
Sbjct: 2   TSAIGFEGFEKRLEISFFNPGPSVDPVARGLRSLTKNQLDKFLAPAECTIVSSLSNDLLD 61

Query: 65  SYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQ 124
           SYVLSESSLFVYPYK+IIKTCGTTKLLLSIP IL+LS  LSL+V+SVRYTRGSFIF GAQ
Sbjct: 62  SYVLSESSLFVYPYKIIIKTCGTTKLLLSIPHILELSGELSLTVQSVRYTRGSFIFPGAQ 121

Query: 125 PFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN---PVYT 181
            FPHRSF+EEV VLD HFGK GM S A+VMG  +  ++WHVYSASAE+ + V    PVYT
Sbjct: 122 TFPHRSFTEEVMVLDSHFGKLGMCSNAYVMGGAEKDQKWHVYSASAESANLVTQTAPVYT 181

Query: 182 LEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGD 241
           LEM MTGL ++ ASVF+K+  SS A+MTEDSGIRKILP+S+ICDF+FDPCGYSMN+IEGD
Sbjct: 182 LEMSMTGLSKRNASVFFKSESSSAAVMTEDSGIRKILPESQICDFDFDPCGYSMNAIEGD 241

Query: 242 AVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHS--DIVGDE 299
           A+STIHVTPEDGFSYASFEAVGYDF+ + LT L+ERVLACF+P+EFSVALH   ++V D 
Sbjct: 242 AISTIHVTPEDGFSYASFEAVGYDFKSMGLTVLIERVLACFEPSEFSVALHGNENVVKDL 301

Query: 300 HGDTFMLDLKGYSCGEKIYEELGN-NGSLIYYSFSRADCST-SPRSILKCCWSEDEKDEE 357
           + +   +++KGY+  E  +E LG   GS++YY F+R   S  SPRS L  CWSE E +EE
Sbjct: 302 NLENNDVNVKGYNVEETKFEVLGGEGGSMVYYGFARGGSSCGSPRSTLHRCWSETENEEE 361

Helianthus annuus (taxid: 4232)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q9M4D8|DCAM_VICFA S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1

 Score =  489 bits (1260), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/353 (67%), Positives = 281/353 (79%)

Query: 3   LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEH 62
           + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE 
Sbjct: 1   MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANED 60

Query: 63  LDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAG 122
           +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP ILKL+ES+SL VR+VRYTRGSFIF G
Sbjct: 61  VDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAESISLDVRAVRYTRGSFIFPG 120

Query: 123 AQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTL 182
           AQ FPHR FSEEVAVLDG FGK G  S A++MG  D  + WHVY ASA++ S  + VYTL
Sbjct: 121 AQSFPHRHFSEEVAVLDGFFGKLGSGSKAYIMGGSDEAQNWHVYCASADSVSPADSVYTL 180

Query: 183 EMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDA 242
           EMCMTGLDR++ASVF+K    S A MT +SGIRKILP SEICDF+F+PCGYSMNS+EG A
Sbjct: 181 EMCMTGLDREKASVFFKQQTGSAAEMTVNSGIRKILPNSEICDFDFEPCGYSMNSVEGPA 240

Query: 243 VSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGD 302
           VSTIH+TPEDGFSYASFE  GYD + + L  ++ RVLACF+P EFSVA+H D        
Sbjct: 241 VSTIHITPEDGFSYASFETAGYDLKAMNLNEMVMRVLACFQPTEFSVAVHVDNASKSFEQ 300

Query: 303 TFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKD 355
             +LD+KGY C EK ++ LG +GS++Y  F +A    SPRS LKC   EDE++
Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVKASDCGSPRSTLKCWKDEDEEE 353

Vicia faba (taxid: 3906)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
21239731	361	S-adenosylmethionine decarboxylase [x Ci	1.0	1.0	0.972	0.0
224077544	357	predicted protein [Populus trichocarpa]	0.988	1.0	0.759	1e-158
255569987	359	s-adenosylmethionine decarboxylase, puta	0.963	0.969	0.774	1e-157
224127572	357	predicted protein [Populus trichocarpa]	0.988	1.0	0.761	1e-156
118486529	361	unknown [Populus trichocarpa]	0.972	0.972	0.752	1e-153
118487929	361	unknown [Populus trichocarpa]	0.972	0.972	0.757	1e-152
27597160	374	S-adenosylmethionine decarboxylase [Malu	0.969	0.935	0.754	1e-150
3913416	357	RecName: Full=S-adenosylmethionine decar	0.988	1.0	0.722	1e-149
225451893	360	PREDICTED: S-adenosylmethionine decarbox	0.994	0.997	0.725	1e-148
224108597	355	predicted protein [Populus trichocarpa]	0.977	0.994	0.705	1e-146

>gi|21239731|gb|AAM44307.1|AF512545_1 S-adenosylmethionine decarboxylase [x Citrofortunella microcarpa]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/361 (97%), Positives = 355/361 (98%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN
Sbjct: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           E+LDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKL+ESLSLSVRSVR+TRGSFIF
Sbjct: 61  EYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRFTRGSFIF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
           AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN VY
Sbjct: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNLVY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDRKRASVFYKTNESS A+MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG
Sbjct: 181 TLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
           DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLT LLERVLACFKPAEFSVALHSDIVGDEH
Sbjct: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTSLLERVLACFKPAEFSVALHSDIVGDEH 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEEVEG 360
           GDTF LD KGYSCGEKIYEELGNNGSLIYYSFSR DCSTSPRSILKCCWSEDEKDEEVEG
Sbjct: 301 GDTFTLDFKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCWSEDEKDEEVEG 360

Query: 361 K 361
           K
Sbjct: 361 K 361

Source: x Citrofortunella microcarpa

Species: x Citrofortunella microcarpa

Genus: x Citrofortunella

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077544|ref|XP_002305295.1| predicted protein [Populus trichocarpa] gi|222848259|gb|EEE85806.1| predicted protein [Populus trichocarpa]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/357 (75%), Positives = 308/357 (86%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MA PVSAIGFEGYEKRLE+ F EPG F+DP G+GLRSLSK QLDEILKPAECTIV SLSN
Sbjct: 1   MAQPVSAIGFEGYEKRLEICFLEPGFFSDPEGKGLRSLSKAQLDEILKPAECTIVDSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           + +DSYVLSESSLFVYPYKVIIKTCGTTKLLLSIP IL+L+++LSL+V SVRYTRGSFI 
Sbjct: 61  DEVDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPVILELADALSLTVCSVRYTRGSFIC 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQPFPHR+F EEV VLDGHF KFG++S A+VMGSP++T++WHVYSA+A   SH  PVY
Sbjct: 121 PGAQPFPHRNFCEEVTVLDGHFSKFGLESVAYVMGSPNSTQKWHVYSAAAGMKSHSGPVY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDRKRASVFYKT+ SS  +MTEDSGIRKILP+SEICDF+FDPCGYSMN+IEG
Sbjct: 181 TLEMCMTGLDRKRASVFYKTHASSATVMTEDSGIRKILPQSEICDFDFDPCGYSMNAIEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            A+STIHVTPEDGFSYASFEAVGYDF+ + L  LL RVL CF+P EFS+ALHS++  DE 
Sbjct: 241 SAISTIHVTPEDGFSYASFEAVGYDFQDLNLRQLLYRVLVCFEPTEFSIALHSNVECDEL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEE 357
           G  F LD+KGYSCG   YE LG  GS++Y+SF+     +SPRSILKCCWSEDEKDEE
Sbjct: 301 GAMFSLDVKGYSCGGGNYEMLGKGGSIVYHSFAATGGCSSPRSILKCCWSEDEKDEE 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569987|ref|XP_002525956.1| s-adenosylmethionine decarboxylase, putative [Ricinus communis] gi|223534688|gb|EEF36380.1| s-adenosylmethionine decarboxylase, putative [Ricinus communis]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/350 (77%), Positives = 305/350 (87%), Gaps = 2/350 (0%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MAL V  IGFEGYEKRLEVSF EPG FADPGG GLRSLSK QLDEILKPAECTIV SLSN
Sbjct: 1   MALSVPPIGFEGYEKRLEVSFSEPGFFADPGGMGLRSLSKSQLDEILKPAECTIVDSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           +H+DSYVLSESSLFVYPYK++IKTCGTTKLLLSIPAILKL+++LSLSV SVRYTRGSFIF
Sbjct: 61  DHVDSYVLSESSLFVYPYKLMIKTCGTTKLLLSIPAILKLADTLSLSVSSVRYTRGSFIF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
             AQ FPHRSFSEEVAVLDGHFGK G++S A+VMGSPD T++WH YSA+ +   H +P+Y
Sbjct: 121 PSAQTFPHRSFSEEVAVLDGHFGKLGLESVAYVMGSPDETRKWHAYSAAIDERCHSSPIY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDR+RASVFYKT+ SS A+MTEDSGIRKILP+SEICDF+FDPCGYSMN++EG
Sbjct: 181 TLEMCMTGLDRERASVFYKTHTSSAAVMTEDSGIRKILPQSEICDFDFDPCGYSMNAVEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
           DA+STIH+TPEDGFSYASFE++GY+FE V LT LLERVLACF+P EFS+ALHS+IV DE 
Sbjct: 241 DAISTIHITPEDGFSYASFESMGYNFEEVNLTQLLERVLACFEPTEFSIALHSNIVHDEL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWS 350
              F  D+KGYSCG + YE LG  GS+IYYSF R     SPRSILKCCWS
Sbjct: 301 --KFFPDVKGYSCGGRNYEVLGKGGSIIYYSFERIKGCASPRSILKCCWS 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127572|ref|XP_002329311.1| predicted protein [Populus trichocarpa] gi|222870765|gb|EEF07896.1| predicted protein [Populus trichocarpa]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/357 (76%), Positives = 306/357 (85%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MALPVSAIGFEGYEKRLE+SF EPG F+DP G+GLRSLSK QLDEIL+PAECTIV SLSN
Sbjct: 1   MALPVSAIGFEGYEKRLEISFLEPGFFSDPEGKGLRSLSKAQLDEILRPAECTIVDSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           + +DSYVLSESSLFVYPYKVIIKTCGTTKLLLSIP ILKL+++LSL+V SVRYTRGSF+ 
Sbjct: 61  DQVDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPVILKLADALSLTVCSVRYTRGSFLC 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQPFPHR+F EEVAVLD HF K G++S A+VMG  D T++WHVYSASA+  SH  PVY
Sbjct: 121 PGAQPFPHRNFCEEVAVLDDHFSKLGLNSVAYVMGGLDKTQKWHVYSASADIESHSGPVY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGL RK+ASVFYKT+ SS A MTEDSGIRKILP+SEICDF+FDPCGYSMN+IEG
Sbjct: 181 TLEMCMTGLGRKQASVFYKTHSSSAAAMTEDSGIRKILPQSEICDFDFDPCGYSMNAIEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            A+STIHVTPEDGFSYASFEAVGYD + + L+ LLERVLACF+P  FSVALHS+I G E 
Sbjct: 241 SAISTIHVTPEDGFSYASFEAVGYDLQDLNLSRLLERVLACFEPTMFSVALHSNIKGAEL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEE 357
              F LD++GYS G   YE LG  GS+IY+SF+R   S SPRSILKCCWSEDEKDEE
Sbjct: 301 RAKFPLDVEGYSGGGGNYEMLGKGGSIIYHSFARTGGSASPRSILKCCWSEDEKDEE 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486529|gb|ABK95104.1| unknown [Populus trichocarpa]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/351 (75%), Positives = 302/351 (86%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MA PVSAIGFEG+EKRLE+ F EPG F+DP G+GLRSLSK QLDEILKPAECTIV SLSN
Sbjct: 1   MAQPVSAIGFEGFEKRLEICFLEPGFFSDPEGKGLRSLSKAQLDEILKPAECTIVDSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           + +DSYVLSESSLFVYPYKVIIKTCGTTKLLLSIP IL+L+++LSL+V SVRYTRGSFI 
Sbjct: 61  DEVDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPVILELADALSLTVCSVRYTRGSFIC 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQPFPHR+F EEV VLDGHF KFG++S A+VMGSP++T++WHVYSA+A   SH  PVY
Sbjct: 121 PGAQPFPHRNFCEEVTVLDGHFSKFGLESVAYVMGSPNSTQKWHVYSAAAGMKSHSGPVY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDRKRASVFYKT+ SS  +MTEDSGIRKILP+SEICDF+FDPCGYSMN+IEG
Sbjct: 181 TLEMCMTGLDRKRASVFYKTHASSATVMTEDSGIRKILPQSEICDFDFDPCGYSMNAIEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            A+STIHVTPEDGFSYASFEAVGYDF+ + L  LL RVL CF+P EFS+ALHS++  DE 
Sbjct: 241 SAISTIHVTPEDGFSYASFEAVGYDFQDLNLRQLLYRVLVCFEPTEFSIALHSNVECDEL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSE 351
           G  F LD+KGYSCG   YE LG  GS++Y+SF+     +SPRSILKCCWSE
Sbjct: 301 GAMFSLDVKGYSCGGGNYEMLGKGGSIVYHSFAATGGCSSPRSILKCCWSE 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487929|gb|ABK95786.1| unknown [Populus trichocarpa]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/351 (75%), Positives = 300/351 (85%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MALPVSAIGFEGYEKRLE+SF EPG F+DP G+GLRSLSK QLDEIL+PAECTIV SLSN
Sbjct: 1   MALPVSAIGFEGYEKRLEISFLEPGFFSDPEGKGLRSLSKAQLDEILRPAECTIVDSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           + +DSYVLSESSLFVYPYKVIIKTCGTTKLLLSIP ILKL+++LSL+V SVRYTRGSF+ 
Sbjct: 61  DQVDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPVILKLADALSLTVCSVRYTRGSFLC 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQPFPHR+F EEVAVLD HF K G++S A+VMG  D T++WHVYSASA+  SH  PVY
Sbjct: 121 PGAQPFPHRNFCEEVAVLDDHFSKLGLNSVAYVMGGLDKTQKWHVYSASADIESHSGPVY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGL RK+ASVFYKT+ SS A MTEDSGIRKILP+SEICDF+FDPCGYSMN+IEG
Sbjct: 181 TLEMCMTGLGRKQASVFYKTHSSSAAAMTEDSGIRKILPQSEICDFDFDPCGYSMNAIEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            A+STIHVTPEDGFSYASFEAVGYD + + L+ LLERVLACF+P  FSVALHS+I G E 
Sbjct: 241 SAISTIHVTPEDGFSYASFEAVGYDLQDLNLSRLLERVLACFEPTMFSVALHSNIKGAEL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSE 351
              F LD++GYS G   YE LG  GS+IY+SF+R   S SPRSILKCCWSE
Sbjct: 301 RAKFPLDVEGYSGGGGNYEMLGKGGSIIYHSFARTGGSASPRSILKCCWSE 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27597160|dbj|BAC55114.1| S-adenosylmethionine decarboxylase [Malus x domestica]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/358 (75%), Positives = 299/358 (83%), Gaps = 8/358 (2%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MA+PVSAIGFEGYEKRLEVSFFEPG+FADP G GLRSLSK Q+DEIL PAECTIVSSLSN
Sbjct: 1   MAVPVSAIGFEGYEKRLEVSFFEPGLFADPKGMGLRSLSKAQIDEILTPAECTIVSSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           + LDSYVLSESSLFVYPYKVIIKTCGTTKLL SIPAILKL++SLSL+V+SVRY+RGSFIF
Sbjct: 61  DDLDSYVLSESSLFVYPYKVIIKTCGTTKLLRSIPAILKLADSLSLAVKSVRYSRGSFIF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGS------ 174
            GA P PHRSFSEEVAVLDGHFGK G+ S A+VMGSPD T++WH+YSASAE  S      
Sbjct: 121 PGAHPSPHRSFSEEVAVLDGHFGKLGLASKAYVMGSPDKTQKWHIYSASAELASLLWGSR 180

Query: 175 HVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYS 234
              P YTLEMCMTGLDRKRASVFYK++ SS A MT +SGIR ILP+S+ICDFEF+PCGYS
Sbjct: 181 QSGPTYTLEMCMTGLDRKRASVFYKSDASSAAGMTVESGIRNILPQSDICDFEFEPCGYS 240

Query: 235 MNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSD 294
           MNSIEG+AVSTIHVTPEDGFSYASFE VGYDF+ V LT LL RVL CFKPAEFS+ALH+ 
Sbjct: 241 MNSIEGNAVSTIHVTPEDGFSYASFETVGYDFKDVNLTQLLYRVLDCFKPAEFSIALHTT 300

Query: 295 IVGDEHGDTFM-LDLKGYSCGEKIYEELGNNGSLIYYSFSRADC-STSPRSILKCCWS 350
               E  D    LDLKGY CG   YE LG  G+++Y+SF + D  S SPRSILKCCWS
Sbjct: 301 STAGEDLDAKCPLDLKGYCCGGSSYEGLGLGGAVMYHSFVKDDSGSQSPRSILKCCWS 358

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3913416|sp|Q42679.1|DCAM_CATRO RecName: Full=S-adenosylmethionine decarboxylase proenzyme; Short=AdoMetDC; Short=SAMDC; Contains: RecName: Full=S-adenosylmethionine decarboxylase alpha chain; Contains: RecName: Full=S-adenosylmethionine decarboxylase beta chain; Flags: Precursor gi|758695|gb|AAC48989.1| S-adenosyl-L-methionine decarboxylase proenzyme [Catharanthus roseus] gi|1094441|prf||2106177A Met(S-adenosyl) decarboxylase

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/357 (72%), Positives = 294/357 (82%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SLSN
Sbjct: 1   MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           ++LDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIPAILKL+ESLSLSVR+V+YTRGSFIF
Sbjct: 61  QYLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAILKLAESLSLSVRNVKYTRGSFIF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQ FPHRSFSEEV +LD +FGK G++S AF+MG+PD  ++WHVYSAS  +    +P Y
Sbjct: 121 PGAQSFPHRSFSEEVELLDNYFGKLGLESNAFIMGNPDQPQKWHVYSASVGSEQSSDPTY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDR++ASVFYK+  SS ALMT  SGIRKILP SEICDFEFDPCGYSMNSIE 
Sbjct: 181 TLEMCMTGLDREKASVFYKSESSSAALMTTRSGIRKILPDSEICDFEFDPCGYSMNSIEE 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            A+STIHVTPEDGFSYASFEA GYD +   L  ++ERVLACF+P+EFSVA+H D+     
Sbjct: 241 AAISTIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACFQPSEFSVAVHCDVTCKSL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEE 357
                L+LK YS  EKI EELG  GS+IY  F R D   SPRSILKCCW EDE +EE
Sbjct: 301 EQICSLELKEYSLDEKINEELGLGGSIIYKKFLRIDACGSPRSILKCCWKEDESEEE 357

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451893|ref|XP_002282704.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme isoform 1 [Vitis vinifera] gi|225451895|ref|XP_002282708.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme isoform 2 [Vitis vinifera] gi|225451897|ref|XP_002282716.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme isoform 3 [Vitis vinifera] gi|147841261|emb|CAN75613.1| hypothetical protein VITISV_022291 [Vitis vinifera]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/361 (72%), Positives = 303/361 (83%), Gaps = 2/361 (0%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           MALPVSAIGFEGYEKRLE+SFFEPG+FADP G GLRSLSK QLDEIL+PAECTIVSSLSN
Sbjct: 1   MALPVSAIGFEGYEKRLEISFFEPGIFADPVGMGLRSLSKTQLDEILEPAECTIVSSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           + +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP ILKL+ SL LSVRSV+YTRGSFIF
Sbjct: 61  DDVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPILKLANSLDLSVRSVKYTRGSFIF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQ FPHR+FSEEV  LDGHFGK G  S A++MGS D  ++WHVY+A+AE    ++PVY
Sbjct: 121 PGAQSFPHRNFSEEVVELDGHFGKLGAGSKAYMMGSHDKPQKWHVYTAAAEFTGRLDPVY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           TLEMCMTGLDRK+ASVFYKT+ SS A+MTE+SGIRKILP SEICDFEFDPCGYSMN+IE 
Sbjct: 181 TLEMCMTGLDRKKASVFYKTDTSSAAVMTENSGIRKILPNSEICDFEFDPCGYSMNAIEE 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
           DA+STIHVTPEDGFSYASFEA+GY+     LT +LERVL CF+PA FSVALH+D+ G + 
Sbjct: 241 DAISTIHVTPEDGFSYASFEAMGYNLNDDSLTQMLERVLDCFQPAHFSVALHADVEGKKL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEEVEG 360
              F LD+ GY C  + YE LG  GS+IY+SF +++   SPRSILK  W E+E++E+V  
Sbjct: 301 EYDFPLDVMGYYCEGRSYEGLGKGGSIIYHSFMKSEECGSPRSILK--WRENEEEEQVLK 358

Query: 361 K 361
           K
Sbjct: 359 K 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108597|ref|XP_002314904.1| predicted protein [Populus trichocarpa] gi|222863944|gb|EEF01075.1| predicted protein [Populus trichocarpa]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/353 (70%), Positives = 296/353 (83%)

Query: 1   MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
           M L VSAIGFEGYEKRLE+++FEPG+F DP G+GLRSLSK QLDEIL PAECTIV SLSN
Sbjct: 1   MDLAVSAIGFEGYEKRLEITYFEPGIFDDPEGKGLRSLSKPQLDEILGPAECTIVDSLSN 60

Query: 61  EHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIF 120
           +++DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIPAILKL+++LSL+VRSVRYTRGSFIF
Sbjct: 61  DYVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAILKLADTLSLNVRSVRYTRGSFIF 120

Query: 121 AGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVY 180
            GAQ +PHRSFSEE+AVLDG FGK G+ S A++MG  D  ++WHVYSASA++    + +Y
Sbjct: 121 PGAQSYPHRSFSEEIAVLDGCFGKLGLASKAYIMGCLDKPQKWHVYSASADSARSRDLIY 180

Query: 181 TLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           T+EMCMTGLDR++ASVFYKT  SS A MT+DSGIRKILP S ICDFEF+PCGYSMNSIEG
Sbjct: 181 TIEMCMTGLDREKASVFYKTQSSSAAAMTDDSGIRKILPASNICDFEFEPCGYSMNSIEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
            A+STIHVTPEDGFSYASFEA GYD +   L  L++RVLACF+  EFS+A+H+D+ G++ 
Sbjct: 241 AAISTIHVTPEDGFSYASFEAAGYDLKDASLNQLVDRVLACFQATEFSIAVHADVAGEQL 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDE 353
                LD+KGY  GE+I+ ELG  GS+IY  F R+  + SPRSILKCCW E+E
Sbjct: 301 ERICSLDVKGYCRGERIHGELGMGGSIIYQKFVRSGNADSPRSILKCCWKEEE 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2076834	366	SAMDC "S-adenosylmethionine de	0.983	0.969	0.637	9.2e-123
TAIR|locus:2146132	362	AT5G15950 [Arabidopsis thalian	0.975	0.972	0.628	4.6e-121
TAIR|locus:2094473	349	AT3G25570 [Arabidopsis thalian	0.955	0.988	0.642	1.8e-112
TAIR|locus:2144985	347	BUD2 "BUSHY AND DWARF 2" [Arab	0.889	0.925	0.437	2.6e-63
DICTYBASE|DDB_G0275567	379	amd1 "S-adenosylmethionine dec	0.880	0.839	0.366	7.9e-46
WB|WBGene00004875	368	smd-1 [Caenorhabditis elegans	0.908	0.891	0.357	5.2e-42
UNIPROTKB|P50243	334	AMD1 "S-adenosylmethionine dec	0.759	0.820	0.360	1.4e-39
RGD|2104	333	Amd1 "adenosylmethionine decar	0.759	0.822	0.360	1.4e-39
UNIPROTKB|P17708	333	Amd1 "S-adenosylmethionine dec	0.759	0.822	0.360	1.4e-39
UNIPROTKB|P17707	334	AMD1 "S-adenosylmethionine dec	0.759	0.820	0.356	4.8e-39

TAIR|locus:2076834 SAMDC "S-adenosylmethionine decarboxylase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 234/367 (63%), Positives = 284/367 (77%)

Query:     3 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEH 62
             + +SAIGFEGYEKRLEV+FFEP +F D  G GLR+L+K QLDEIL PA CTIVSSLSN+ 
Sbjct:     1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 60

Query:    63 LDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAG 122
             LDSYVLSESS FVYPYKVIIKTCGTTKLLLSIP +          V+SV+YTRGSF+  G
Sbjct:    61 LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPG 120

Query:   123 AQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNP-VYT 181
              QPFPHRSFSEEV+VLDGHF + G++S A++MG+ D TK+WHVY+ASA+  S+ N  VYT
Sbjct:   121 GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT 180

Query:   182 LEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGD 241
             LEMCMTGLDR++A+VFYK        MT++SGIRKILPKSEICDFEF+PCGYSMNSIEGD
Sbjct:   181 LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD 240

Query:   242 AVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHG 301
             A+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ RVL+CF+P +FSVA+HS +  + + 
Sbjct:   241 AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 300

Query:   302 DTFMLDLKGYSCGEKIYEELGN-NGSLIYYSFSRAD--CSTSPRSILKCCWS-------E 351
                 +DL+ Y C E+ +E LG  +G+++Y +F +    C  SPRS LKC WS       E
Sbjct:   301 PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCG-SPRSTLKCEWSSNNSCSSE 359

Query:   352 DEKDEEV 358
             DEKDE +
Sbjct:   360 DEKDEGI 366

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS;IDA

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0006596 "polyamine biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0016458 "gene silencing" evidence=IMP

GO:0019079 "viral genome replication" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2146132 AT5G15950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 228/363 (62%), Positives = 278/363 (76%)

Query:     3 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEH 62
             + +SAIGFEGYEKRLEV+FFEPG+F D  G+GLR+L+K Q+DEIL+PAECTIVSSLSN+ 
Sbjct:     1 MAMSAIGFEGYEKRLEVTFFEPGLFLDTQGKGLRALAKSQIDEILQPAECTIVSSLSNDQ 60

Query:    63 LDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAG 122
             LDSYVLSESSLF++PYK++IKTCGTTKLLLSI  +          V++VRYTRGSF+  G
Sbjct:    61 LDSYVLSESSLFIFPYKIVIKTCGTTKLLLSIEPLLRLAGELSLDVKAVRYTRGSFLCPG 120

Query:   123 AQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTL 182
              QPFPHR+FSEEV+VLDGHF K G+ S A++MG+ D TK+WHVYSAS+   ++ N VYTL
Sbjct:   121 GQPFPHRNFSEEVSVLDGHFAKLGLSSVAYLMGNDDETKKWHVYSASSANSNNKNNVYTL 180

Query:   183 EMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDA 242
             EMCMTGLD+ +ASVFYK   SS   MT++SGIRKILP+S+ICDFEF+PCGYSMNSIEGDA
Sbjct:   181 EMCMTGLDKDKASVFYKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSIEGDA 240

Query:   243 VSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGD 302
             +STIHVTPEDGFSYASFEAVGYDF  + L+ L+ +VL CFKP +FSVA+HS +    +  
Sbjct:   241 ISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCFKPKQFSVAVHSTVAQKSYDS 300

Query:   303 TFMLDLKGYSCGEKIYEELGNN-GSLIYYSFSRAD--CSTSPRSILKCCWS-------ED 352
                +DL  Y C E   E LG   G+++Y  F +    C  SPRS LKC WS       ED
Sbjct:   301 GLSVDLDDYGCKESTMESLGEERGTVMYQRFEKLGRYCG-SPRSTLKCEWSSNSSCNSED 359

Query:   353 EKD 355
             EK+
Sbjct:   360 EKE 362

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2094473 AT3G25570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 225/350 (64%), Positives = 260/350 (74%)

Query:     3 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEH 62
             + VSA GFEG+EKRLE+SFFE   F DP G+ LRSL+K QLDEIL PAECTIVSSL+N  
Sbjct:     1 MAVSATGFEGFEKRLEISFFETTDFLDPQGKSLRSLTKSQLDEILTPAECTIVSSLTNSF 60

Query:    63 LDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAG 122
             +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP I          V+SVRYTRGSFIF G
Sbjct:    61 VDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPHILRLADSLCLTVKSVRYTRGSFIFPG 120

Query:   123 AQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNT-KRWHVYSASAEAGSHV--NPV 179
             AQ +PHRSFSEEVA+LD +FGK    S AFVMG  DN  +RWHVYSAS+   S V   PV
Sbjct:   121 AQSYPHRSFSEEVALLDDYFGKLNAGSKAFVMGGSDNNPQRWHVYSASSTEESAVCDKPV 180

Query:   180 YTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIE 239
             YTLEMCMTGLD  +ASVF+KTN  S + MT  SGIR ILP SEICDF F+PCGYSMNSIE
Sbjct:   181 YTLEMCMTGLDNIKASVFFKTNSVSASEMTISSGIRNILPGSEICDFNFEPCGYSMNSIE 240

Query:   240 GDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDE 299
             GDAVSTIHVTPEDGFSYASFE VGYD + +    L++RVL CF P EFSVA+H+++  + 
Sbjct:   241 GDAVSTIHVTPEDGFSYASFETVGYDLKALNFKELVDRVLVCFGPEEFSVAVHANLGTEV 300

Query:   300 HGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRA-DCSTSPRSILKCC 348
                  + D+ GY   E+  EELG  GS++Y  F +  +C  SP+S L  C
Sbjct:   301 LASDCVADVNGYFSQERELEELGLGGSVLYQRFVKTVECC-SPKSTLGFC 349

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

TAIR|locus:2144985 BUD2 "BUSHY AND DWARF 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 150/343 (43%), Positives = 204/343 (59%)

Query:     9 GFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVL 68
             GFEG+EKRLE+ FF+          GLR +    LD++L   +CT+VS+++N   D+YVL
Sbjct:     5 GFEGFEKRLELRFFDDDKPITKNPMGLRLIDFESLDQVLNEVQCTVVSAVANRSFDAYVL 64

Query:    69 SESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPH 128
             SESSLFVYP K+IIKTCGTT+LL SI  +          +R+ RY+RGSFIF  AQPFP+
Sbjct:    65 SESSLFVYPTKIIIKTCGTTQLLKSIRPLIHLARNLGLTLRACRYSRGSFIFPKAQPFPY 124

Query:   129 RSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKR-WHVYSASAEAGSHVNPVYTLEMCMT 187
              SF +EV V++    K      A VM   +N  R WHV++ASA+  S  + V  +E+CMT
Sbjct:   125 TSFKDEVIVVEESLPKSLCYRKASVMTPSNNPSRAWHVFTASADVESDEH-VVVVEVCMT 183

Query:   188 GLDRKRASVFYKT-----NESSVA--LMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
              LDR  A  F+K      N S  A   MT  SGI  I   + ICDF FDPCGYSMN ++G
Sbjct:   184 ELDRVNARSFFKRKGDEKNNSDSAGKEMTRLSGIDNINANAYICDFAFDPCGYSMNGVDG 243

Query:   241 DAVSTIHVTPEDGFSYASFEAVG---YDFEVVKLTPLLERVLACFKPAEFSVALHSDIVG 297
             D  STIHVTPEDGFSYASFE  G   YD     ++ +L R +  F+P++ S+A  +   G
Sbjct:   244 DRYSTIHVTPEDGFSYASFEC-GLSLYDNGHEDISEVLSRAIDVFRPSDVSIA--TTYGG 300

Query:   298 DEHGDTF------MLDLK-GYSCGEKIYEELGNNGSLIYYSFS 333
             +++          +L  K    C  ++ +E   +G+++Y SF+
Sbjct:   301 EDYNHEVTKRVERVLAKKLDLKCRSRLMDEFPGSGTVVYQSFT 343

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

DICTYBASE|DDB_G0275567 amd1 "S-adenosylmethionine decarboxylase" [Dictyostelium discoideum (taxid:44689)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 124/338 (36%), Positives = 172/338 (50%)

Query:     9 GFEGYEKRLEVSF--FEPG----VFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEH 62
             GFEG EK+L++ F     G    +   P   GLR++ K +   +L  A CTI+S  SN+H
Sbjct:    28 GFEGPEKKLDIRFGPISKGSVKSIAGSPSKVGLRTIDKEKWQTVLDSARCTIISQTSNDH 87

Query:    63 LDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAG 122
             +DSYVLSESSLFVYP + +IKTCGTT LL  I  +          V  V ++R +     
Sbjct:    88 MDSYVLSESSLFVYPRRAMIKTCGTTTLLHLIAKMVQVGKECGLEVEMVVFSRKNLNQPS 147

Query:   123 AQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPV-YT 181
              Q FPH SFS+EV  L+  F     D  A+VMG   N   W++Y A       +     T
Sbjct:   148 KQVFPHCSFSDEVNFLNKIF-----DGQAYVMGDV-NKDHWNLYIADFRKNPTLQRTEQT 201

Query:   182 LEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGD 241
              E+ M  LD      F+K    S    T +SGI  +LP S I DF+FDPCGYSMN +  +
Sbjct:   202 FEVMMHDLDETVMKQFFKREGVSAWDTTVNSGIADLLPGSMIDDFQFDPCGYSMNGLLNE 261

Query:   242 AVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHG 301
                TIH+TPE   SY SF+    +  +     LL +VL  FKP  F+ AL+++  G   G
Sbjct:   262 FYWTIHITPESHCSYVSFDT---NVALADYNQLLAKVLNVFKPGRFTAALYAED-GAPCG 317

Query:   302 D---TFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRAD 336
             D    F +++  Y+   K          ++  ++ + D
Sbjct:   318 DPYTAFDVNVPSYAIQNKTVHGFDGGYDVVVSNYQQLD 355

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0006597 "spermine biosynthetic process" evidence=IEA

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0006596 "polyamine biosynthetic process" evidence=IEA

GO:0006557 "S-adenosylmethioninamine biosynthetic process" evidence=IEA

WB|WBGene00004875 smd-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 129/361 (35%), Positives = 189/361 (52%)

Query:    10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
             FEG EK LE+ F           R LR + + ++D +L  A C I+ S  NE +DSYVLS
Sbjct:    25 FEGAEKLLELWFCSS---TQNETRSLRIIPREEIDAMLDIARCKILHSKHNESIDSYVLS 81

Query:    70 ESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXX--VRSVRYTRGSFIFAGAQPFP 127
             ESSLF+   +VI+KTCGTT+LL ++P I            V+SV Y+R +F+    QP  
Sbjct:    82 ESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQSVYYSRKNFLRPDLQPSL 141

Query:   128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYS--ASAEAGSHVNPVYTLEMC 185
             H++F  EV  LD  F    +D  A+ +GS     RW++Y+     E  +H  P +TLE+ 
Sbjct:   142 HKNFDAEVEYLDSFF----VDGHAYCLGSLKQD-RWYLYTFHREVEFPAHKQPDHTLEIL 196

Query:   186 MTGLDRKRASVFYKTN--ESSVALMTEDSGIRKILPK-SEICDFEFDPCGYSMNSI--EG 240
             M+ LD +    F K    + +   M   +GI KI+P  +++ D  FDPCGYSMN+   + 
Sbjct:   197 MSDLDEEVLHKFTKDYAVDGNDCFMR--AGIDKIIPAGADVHDELFDPCGYSMNAYMNDT 254

Query:   241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
             D  +TIHVTPE  FS+ASFE    + ++V L     +VL CF+P +  + + ++ + ++ 
Sbjct:   255 DQYATIHVTPEKAFSFASFET---NQDLVCLYSQTRKVLQCFRPNKILMTVFANDISEKG 311

Query:   301 GDT----FMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDE 356
              D     +  +L GY      +  L    +L+Y  F R   ST   S      S DE D 
Sbjct:   312 KDAQQQLWDRELPGYRRTNVQFVRLETE-TLVYAHFVRK-ASTGQDSS-----SSDEDDG 364

Query:   357 E 357
             E
Sbjct:   365 E 365

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;IDA

GO:0008295 "spermidine biosynthetic process" evidence=IEA;IDA

GO:0006597 "spermine biosynthetic process" evidence=IEA;IDA

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0016358 "dendrite development" evidence=IMP

UNIPROTKB|P50243 AMD1 "S-adenosylmethionine decarboxylase proenzyme" [Bos taurus (taxid:9913)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 103/286 (36%), Positives = 154/286 (53%)

Query:    10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
             FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLS
Sbjct:     7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66

Query:    70 ESSLFVYPYKVIIKTCGTTKLLLS-IPAIXXXXXXXXX-XVRSVRYTRGSFIFAGAQPFP 127
             ESS+FV   + I+KTCGTT LL + +P +           ++S  Y+R +F+    Q +P
Sbjct:    67 ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126

Query:   128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCM 186
             HR+F EE+  L+  F     +  A+ MG   N+  W++Y+        +N P  TLE+ M
Sbjct:   127 HRNFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVINQPDQTLEILM 181

Query:   187 TGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-T 245
             + LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    T
Sbjct:   182 SELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWT 241

Query:   246 IHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
             IH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:   242 IHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284

GO:0006557 "S-adenosylmethioninamine biosynthetic process" evidence=IEA

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0006597 "spermine biosynthetic process" evidence=IEA

RGD|2104 Amd1 "adenosylmethionine decarboxylase 1" [Rattus norvegicus (taxid:10116)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 103/286 (36%), Positives = 153/286 (53%)

Query:    10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
             FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLS
Sbjct:     7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLS 66

Query:    70 ESSLFVYPYKVIIKTCGTTKLLLS-IPAIXXXXXXXXX-XVRSVRYTRGSFIFAGAQPFP 127
             ESS+FV   + I+KTCGTT LL + +P +           ++S  Y+R +F+    Q +P
Sbjct:    67 ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126

Query:   128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCM 186
             HR+F EE+  L+  F     +  A+ MG   N+  W++Y+        +N P  TLE+ M
Sbjct:   127 HRNFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDLPESRVINQPDQTLEILM 181

Query:   187 TGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-T 245
             + LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    T
Sbjct:   182 SELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWT 241

Query:   246 IHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
             IH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:   242 IHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISO;IDA

GO:0006557 "S-adenosylmethioninamine biosynthetic process" evidence=IEA

GO:0006595 "polyamine metabolic process" evidence=IDA

GO:0006597 "spermine biosynthetic process" evidence=IEA;ISO;IDA

GO:0008295 "spermidine biosynthetic process" evidence=IEA;ISO;IDA

UNIPROTKB|P17708 Amd1 "S-adenosylmethionine decarboxylase proenzyme" [Rattus norvegicus (taxid:10116)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 103/286 (36%), Positives = 153/286 (53%)

Query:    10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
             FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLS
Sbjct:     7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLS 66

Query:    70 ESSLFVYPYKVIIKTCGTTKLLLS-IPAIXXXXXXXXX-XVRSVRYTRGSFIFAGAQPFP 127
             ESS+FV   + I+KTCGTT LL + +P +           ++S  Y+R +F+    Q +P
Sbjct:    67 ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126

Query:   128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCM 186
             HR+F EE+  L+  F     +  A+ MG   N+  W++Y+        +N P  TLE+ M
Sbjct:   127 HRNFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDLPESRVINQPDQTLEILM 181

Query:   187 TGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-T 245
             + LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    T
Sbjct:   182 SELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWT 241

Query:   246 IHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
             IH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:   242 IHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284

GO:0006557 "S-adenosylmethioninamine biosynthetic process" evidence=IEA

UNIPROTKB|P17707 AMD1 "S-adenosylmethionine decarboxylase proenzyme" [Homo sapiens (taxid:9606)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 102/286 (35%), Positives = 154/286 (53%)

Query:    10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
             FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLS
Sbjct:     7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66

Query:    70 ESSLFVYPYKVIIKTCGTTKLLLS-IPAIXXXXXXXXX-XVRSVRYTRGSFIFAGAQPFP 127
             ESS+FV   + I+KTCGTT LL + +P +           ++S  Y+R +F+    Q +P
Sbjct:    67 ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126

Query:   128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCM 186
             HR+F EE+  L+  F     +  A+ MG   N+  W++Y+        ++ P  TLE+ M
Sbjct:   127 HRNFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILM 181

Query:   187 TGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-T 245
             + LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    T
Sbjct:   182 SELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWT 241

Query:   246 IHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
             IH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:   242 IHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284

GO:0006557 "S-adenosylmethioninamine biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=NAS

GO:0006597 "spermine biosynthetic process" evidence=NAS

GO:0004014 "adenosylmethionine decarboxylase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006595 "polyamine metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96286	DCAM1_ARATH	4, ., 1, ., 1, ., 5, 0	0.6557	0.9861	0.9726	yes	no
Q9P7E3	DCAM_SCHPO	4, ., 1, ., 1, ., 5, 0	0.3196	0.8725	0.8333	yes	no
Q42679	DCAM_CATRO	4, ., 1, ., 1, ., 5, 0	0.7226	0.9889	1.0	N/A	no
Q96555	DCAM_DATST	4, ., 1, ., 1, ., 5, 0	0.6991	0.9667	0.9640	N/A	no
O02655	DCAM_CAEEL	4, ., 1, ., 1, ., 5, 0	0.3601	0.8670	0.8505	yes	no
O65354	DCAM_HELAN	4, ., 1, ., 1, ., 5, 0	0.6888	0.9778	0.9778	N/A	no
Q96471	DCAM_IPONI	4, ., 1, ., 1, ., 5, 0	0.6869	0.9972	0.9944	N/A	no
Q39676	DCAM1_DIACA	4, ., 1, ., 1, ., 5, 0	0.6386	0.9861	0.9343	N/A	no
Q39677	DCAM2_DIACA	4, ., 1, ., 1, ., 5, 0	0.6591	0.9501	0.9098	N/A	no
Q9M4D8	DCAM_VICFA	4, ., 1, ., 1, ., 5, 0	0.6713	0.9778	1.0	N/A	no
Q38IY3	DCAM_SOLCI	4, ., 1, ., 1, ., 5, 0	0.7020	0.9667	0.9748	N/A	no
Q42613	DCAM1_BRAJU	4, ., 1, ., 1, ., 5, 0	0.5983	0.9778	0.9592	N/A	no
O80402	DCAM_NICSY	4, ., 1, ., 1, ., 5, 0	0.7163	0.9667	0.9667	N/A	no
O24575	DCAM_MAIZE	4, ., 1, ., 1, ., 5, 0	0.5492	0.9473	0.855	N/A	no
Q9AXE3	DCAM_DAUCA	4, ., 1, ., 1, ., 5, 0	0.6685	0.9667	0.9667	N/A	no
Q43820	DCAM_PEA	4, ., 1, ., 1, ., 5, 0	0.6600	0.9778	1.0	N/A	no
Q42829	DCAM_HORCH	4, ., 1, ., 1, ., 5, 0	0.5418	0.9501	0.8727	N/A	no
Q9M6K1	DCAM_IPOBA	4, ., 1, ., 1, ., 5, 0	0.6814	0.9972	0.9944	N/A	no
O04009	DCAM_TOBAC	4, ., 1, ., 1, ., 5, 0	0.7155	0.9639	0.9639	N/A	no
Q9SDM8	DCAM3_BRAJU	4, ., 1, ., 1, ., 5, 0	0.6521	0.9833	0.9673	N/A	no
A2XV58	DCAM_ORYSI	4, ., 1, ., 1, ., 5, 0	0.5472	0.9556	0.8668	N/A	no
O49972	DCAM2_BRAJU	4, ., 1, ., 1, ., 5, 0	0.6422	0.9861	0.9647	N/A	no
Q04694	DCAM_SOLTU	4, ., 1, ., 1, ., 5, 0	0.7106	0.9667	0.9694	N/A	no
P46255	DCAM_SPIOL	4, ., 1, ., 1, ., 5, 0	0.6333	0.9833	0.9779	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.1.1.50	0.979
3rd Layer	4.1.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IV.4194.1	SubName- Full=Putative uncharacterized protein; (357 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_X0357	spermidine synthase (335 aa)						•	•		0.912
	grail3.0009003101	spermidine synthase (335 aa)						•	•		0.912
	fgenesh4_pg.C_LG_XII000148	spermidine synthase (EC-2.5.1.16) (347 aa)						•	•		0.912
	estExt_Genewise1_v1.C_7280001	spermidine synthase (EC-2.5.1.16) (348 aa)						•	•		0.911
	estExt_Genewise1_v1.C_LG_VI2502	spermine synthase (EC-2.5.1.22) (340 aa)						•	•		0.905
	gw1.X.5941.1	spermine synthase (EC-2.5.1.22) (303 aa)						•	•		0.902
	gw1.VIII.1889.1	SubName- Full=Putative uncharacterized protein; (299 aa)						•	•		0.902
	DMT902	DNA methyltransferase (1503 aa)						•			0.899
	DMT906	DNA methyltransferase (350 aa)						•			0.899
	DMT904	DNA methyltransferase (729 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
PLN02524	355	PLN02524, PLN02524, S-adenosylmethionine decarboxy	0.0
pfam01536	328	pfam01536, SAM_decarbox, Adenosylmethionine decarb	1e-175
TIGR00535	334	TIGR00535, SAM_DCase, S-adenosylmethionine decarbo	1e-135

>gnl|CDD|215287 PLN02524, PLN02524, S-adenosylmethionine decarboxylase

 Score =  602 bits (1555), Expect = 0.0
 Identities = 248/357 (69%), Positives = 291/357 (81%), Gaps = 4/357 (1%)

Query: 3   LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEH 62
           +PVSAIGFEG+EKRLE++FFEP VFADP GRGLR+L++ QLDEIL+PAECTIVSSLSN+ 
Sbjct: 1   MPVSAIGFEGFEKRLEITFFEPPVFADPNGRGLRALTRSQLDEILRPAECTIVSSLSNDQ 60

Query: 63  LDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAG 122
            DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP +L+L+  LSLSVRSV+YTRGSFIF G
Sbjct: 61  FDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIFPG 120

Query: 123 AQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYT 181
           AQPFPHRSFSEEV+VLDGHFGK G+   A+VMG PD  ++WHVYSASA   S+ N PVYT
Sbjct: 121 AQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDKGQKWHVYSASAHNSSNSNEPVYT 180

Query: 182 LEMCMTGLDRKRASVFYKTNESSVAL-MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG 240
           LEMCMTGLDR++ASVF+K +  S A  MT+ SGIRKILP+SEICDF FDPCGYSMN IEG
Sbjct: 181 LEMCMTGLDREKASVFFKDSSLSSAEEMTKASGIRKILPESEICDFAFDPCGYSMNGIEG 240

Query: 241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH 300
           DA+STIHVTPEDGFSYASFEA+GYD   + L+ L+ERVLACFKP EFSVA+H+++ G+  
Sbjct: 241 DAISTIHVTPEDGFSYASFEAMGYDPGDLDLSQLVERVLACFKPKEFSVAVHANVGGEAG 300

Query: 301 GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEE 357
                LD  GYSC  +  +EL   GS++Y +F+      SPRS LK  WSE+E  E 
Sbjct: 301 SWGCSLDPDGYSCKGRSCQELPGGGSVVYQTFTATGGCGSPRSTLK--WSENESCES 355

Length = 355

>gnl|CDD|216558 pfam01536, SAM_decarbox, Adenosylmethionine decarboxylase

 Score =  490 bits (1264), Expect = e-175
 Identities = 201/334 (60%), Positives = 248/334 (74%), Gaps = 12/334 (3%)

Query: 5   VSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLD 64
            SAIGFEG EKRLE+ FFE   F+D  G+GLR+LSK Q DE+L PAECTIVSSLSNE++D
Sbjct: 1   ESAIGFEGPEKRLEIWFFE-SPFSDTHGKGLRALSKSQWDEVLDPAECTIVSSLSNEYID 59

Query: 65  SYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQ 124
           SYVLSESSLFV  Y++I+KTCGTT LLLSIP IL+L+E+LSL V+SV Y+R +FIF GAQ
Sbjct: 60  SYVLSESSLFVSKYRIILKTCGTTTLLLSIPPILELAEALSLEVQSVFYSRKNFIFPGAQ 119

Query: 125 PFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEM 184
           P+PHRSFSEEVA LD HF        A+ MG PD  ++WH+YSASA      +P YTLEM
Sbjct: 120 PYPHRSFSEEVAYLDSHFP----GGKAYCMGPPDKDQKWHLYSASAPPSESSDPDYTLEM 175

Query: 185 CMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEIC-DFEFDPCGYSMNSIEGDAV 243
            MTGLD+++ASVF+K   SS A MTE SGIRKILP S IC DF+F+PCGYSMN+IEGDA 
Sbjct: 176 LMTGLDKEKASVFFKDESSSAADMTEASGIRKILPNSAICHDFDFEPCGYSMNAIEGDAY 235

Query: 244 STIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH--G 301
           STIHVTPEDGFSYASFE      + + L+ L+ RVL CF+P+EFSV + +  V  +    
Sbjct: 236 STIHVTPEDGFSYASFETN---LKALNLSDLIRRVLNCFQPSEFSVTVFASSVAGKTLEQ 292

Query: 302 DTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSR 334
               ++++GY C E  ++ LG   GSL+Y  F++
Sbjct: 293 KGLSVEVEGYPCRETDHQVLGLPGGSLVYQKFAK 326

This is a family of S-adenosylmethionine decarboxylase (SAMDC) proenzymes. In the biosynthesis of polyamines SAMDC produces decarboxylated S-adenosylmethionine, which serves as the aminopropyl moiety necessary for spermidine and spermine biosynthesis from putrescine. The Pfam alignment contains both the alpha and beta chains that are cleaved to form the active enzyme. Length = 328

>gnl|CDD|233012 TIGR00535, SAM_DCase, S-adenosylmethionine decarboxylase proenzyme, eukaryotic form

 Score =  387 bits (996), Expect = e-135
 Identities = 162/339 (47%), Positives = 215/339 (63%), Gaps = 19/339 (5%)

Query: 10  FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
           FEG EK LE+ FFE   F    G+GLR++ + Q+DEIL  A CTI+SS  N+ LDSYVLS
Sbjct: 1   FEGPEKLLEIWFFEHKKFI-DEGKGLRAIGRAQIDEILDLARCTILSSKKNKSLDSYVLS 59

Query: 70  ESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLS--LSVRSVRYTRGSFIFAGAQPFP 127
           ESSLF+Y +K+IIKTCGTTKLL ++P IL+L+E LS    V SV Y+RG F+F  AQP  
Sbjct: 60  ESSLFIYDHKIIIKTCGTTKLLFALPKILQLAEQLSSWYKVFSVFYSRGCFLFPCAQPAI 119

Query: 128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGS--HVNPVYTLEMC 185
           HR+FSEEVA L+  FG    +  A+V+G P   ++WH+Y A  E  +    +P  TLEM 
Sbjct: 120 HRNFSEEVAYLNKFFG----NGKAYVVGDPAKPQKWHLYVAETERETPKIEDPDETLEML 175

Query: 186 MTGLDRKRASVFYKTNESSV----ALMTEDSGIRKILPKS-EICDFEFDPCGYSMNSIEG 240
           MTGLD+++AS F+K   +S       MT++SGI KI+P S +ICDF+F+PCGYSMN+I G
Sbjct: 176 MTGLDKEKASKFFKGPAASTHNLGYQMTKNSGIDKIIPNSAQICDFDFEPCGYSMNAILG 235

Query: 241 -DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDE 299
             A STIHVTPE GFSYASFE+ G D        L+ RVL CF+P+EFS+ + +      
Sbjct: 236 EKAYSTIHVTPEKGFSYASFESNGIDQGKQDYLDLVLRVLNCFQPSEFSMTVFAKN-YQN 294

Query: 300 HGDTFM--LDLKGYSCGEKIYEELG-NNGSLIYYSFSRA 335
                +  ++       +   +EL   +  L Y  F + 
Sbjct: 295 QSFQKLLSINESLPDYIKLDKQELDLGDYHLFYQKFQKK 333

This enzyme is a key regulatory enzyme of the polyamine synthetic pathway. This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site [Central intermediary metabolism, Polyamine biosynthesis]. Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
PLN02524	355	S-adenosylmethionine decarboxylase	100.0
TIGR00535	334	SAM_DCase S-adenosylmethionine decarboxylase proen	100.0
PF01536	331	SAM_decarbox: Adenosylmethionine decarboxylase; In	100.0
KOG0788	334	consensus S-adenosylmethionine decarboxylase [Sign	100.0
TIGR03330	112	SAM_DCase_Bsu S-adenosylmethionine decarboxylase p	95.7
PF02675	106	AdoMet_dc: S-adenosylmethionine decarboxylase ; In	94.97
PRK04025	139	S-adenosylmethionine decarboxylase proenzyme; Vali	94.75
PRK01706	123	S-adenosylmethionine decarboxylase proenzyme; Vali	94.37
PRK02770	139	S-adenosylmethionine decarboxylase proenzyme; Prov	93.59
PRK03124	127	S-adenosylmethionine decarboxylase proenzyme; Prov	93.55
PRK01236	131	S-adenosylmethionine decarboxylase proenzyme; Prov	92.65
PRK00458	127	S-adenosylmethionine decarboxylase proenzyme; Prov	90.92
COG1586	136	SpeD S-adenosylmethionine decarboxylase [Amino aci	88.93

>PLN02524 S-adenosylmethionine decarboxylase

Probab=100.00  E-value=8.6e-134  Score=986.84  Aligned_cols=352  Identities=70%  Similarity=1.161  Sum_probs=331.2

Q ss_pred             CCCCCCCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEE
Q 039582            3 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVII   82 (361)
Q Consensus         3 ~~~s~~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIL   82 (361)
                      +++++++|||+||||||||++++.+.++.++|||+|||++|++||++|+|+|||+++|++||||||||||||||||||||
T Consensus         1 ~~~~~~~FEG~EKrLEI~F~~~~~~~~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIL   80 (355)
T PLN02524          1 MPVSAIGFEGFEKRLEITFFEPPVFADPNGRGLRALTRSQLDEILRPAECTIVSSLSNDQFDSYVLSESSLFVYPYKIII   80 (355)
T ss_pred             CCCCCCCccccceEEEEEEecCcccCCCCCCccccCCHHHHHHHHHHcCCEEEeecccCCceeeeecceeEEEECCEEEE
Confidence            57899999999999999999876666778899999999999999999999999999999999999999999999999999


Q ss_pred             eccCchhhhchHHHHHHHHhhcCceeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCCc
Q 039582           83 KTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKR  162 (361)
Q Consensus        83 KTCGTT~LL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~~  162 (361)
                      |||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|++||++|+++|++|+.+|+||+||+++++||
T Consensus        81 KTCGTT~LL~~i~~ll~la~~~~l~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~l~~~G~AY~~G~~~~~~h  160 (355)
T PLN02524         81 KTCGTTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIFPGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDKGQK  160 (355)
T ss_pred             EeCCcccHHHHHHHHHHHHHHcCCceeEEEEecccccCcccCCCcccCHHHHHHHHHHhcccccCCceEEEeCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876799


Q ss_pred             EEEEecCCCCCC-CCCCceeEEEEecCCCHhhhcccccCCc-chHHHHHHHhCCccccCCCccccccCCCCcccccccCC
Q 039582          163 WHVYSASAEAGS-HVNPVYTLEMCMTGLDRKRASVFYKTNE-SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG  240 (361)
Q Consensus       163 W~ly~~~~~~~~-~~~~d~TlEilMt~Ld~~~a~~F~~~~~-~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~  240 (361)
                      ||||+++..... ..++|+|+|||||+||+++|++||++++ ++|.+||+.+||++|+|++.||||+|+|||||||||.|
T Consensus       161 W~lY~a~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~s~~~~t~~sgI~~i~P~~~iddf~F~PCGYSmN~i~g  240 (355)
T PLN02524        161 WHVYSASAHNSSNSNEPVYTLEMCMTGLDREKASVFFKDSSLSSAEEMTKASGIRKILPESEICDFAFDPCGYSMNGIEG  240 (355)
T ss_pred             eEEEeCCCcccccCCCCCeEEEEEccCCCHHHHhhhhhCcccccHHHHHHhhChhhhCCCCeecccccCCCcccccccCC
Confidence            999999876532 2579999999999999999999999987 89999999999999999999999999999999999999


Q ss_pred             CceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCcccccccCCCCCceecceEEee
Q 039582          241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEE  320 (361)
Q Consensus       241 ~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~~~~~~~~~~~gy~~~~~~~~~  320 (361)
                      ++|+|||||||++|||||||||++|....++.+||+|||+||+|++|+||+|+|............+++||+|.+++.++
T Consensus       241 ~~y~TIHVTPE~~~SYaSFEtn~~~~~~~~~~~lv~rVl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~gY~~~~~~~~~  320 (355)
T PLN02524        241 DAISTIHVTPEDGFSYASFEAMGYDPGDLDLSQLVERVLACFKPKEFSVAVHANVGGEAGSWGCSLDPDGYSCKGRSCQE  320 (355)
T ss_pred             CceEEEEECCCCCCeEEEEEeccCCccccCHHHHHHHHHhhcCCceEEEEEEecCccchhccccccCcCCceecCcEEEe
Confidence            99999999999999999999999888888999999999999999999999999876544444455678999999999999


Q ss_pred             CCCCceEEEEEEEecCCCCCCccccccccccccchh
Q 039582          321 LGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDE  356 (361)
Q Consensus       321 l~~gy~l~y~~f~r~~~~~sp~s~l~~~w~~~~~~~  356 (361)
                      |++||+|+|++|+|...|++|||+|+  |+++++++
T Consensus       321 l~~~~~l~y~~f~~~~~~~~~~~~~~--~~~~~~~~  354 (355)
T PLN02524        321 LPGGGSVVYQTFTATGGCGSPRSTLK--WSENESCE  354 (355)
T ss_pred             cCCCcEEEEEEEEecCCCCCchhhhc--cchhcccc
Confidence            99889999999999999999999999  99888654

>TIGR00535 SAM_DCase S-adenosylmethionine decarboxylase proenzyme, eukaryotic form

Probab=100.00  E-value=4.2e-124  Score=912.30  Aligned_cols=320  Identities=51%  Similarity=0.827  Sum_probs=294.0

Q ss_pred             CCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEEeccCchh
Q 039582           10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTK   89 (361)
Q Consensus        10 FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTT~   89 (361)
                      |||+||||||||++++.. .+.++|||+|||++|++||++|+|+|||+++|++|||||||||||||||||||||||||||
T Consensus         1 FEG~EKrLEI~F~~~~~~-~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGTTt   79 (334)
T TIGR00535         1 FEGPEKLLEIWFFEHKKF-IDEGKGLRAIGRAQIDEILDLARCTILSSKKNKSLDSYVLSESSLFIYDHKIIIKTCGTTK   79 (334)
T ss_pred             CCCcceEEEEEEecCCcC-CCCCCChhhCCHHHHHHHHHhhCcEEeeeccCCceeEeEeccceeeEECCEEEEEeCCCch
Confidence            999999999999976543 3678999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHhhc-Cc-eeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCCcEEEEe
Q 039582           90 LLLSIPAILKLSESL-SL-SVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYS  167 (361)
Q Consensus        90 LL~~l~~ll~la~~~-~~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~~W~ly~  167 (361)
                      ||+|||+||++|+++ |+ .|++|+||||||+||++|++||+||+|||++|+++|+    +|+||+||++++++|||+|+
T Consensus        80 LL~~l~~ll~~a~~~~g~~~v~~v~YsRksf~fP~~Q~~pH~sf~eEV~~L~~~F~----~g~AY~~G~~~~~~~WhlY~  155 (334)
T TIGR00535        80 LLFALPKILQLAEQLSSWYKVFSVFYSRGCFLFPCAQPAIHRNFSEEVAYLNKFFG----NGKAYVVGDPAKPQKWHLYV  155 (334)
T ss_pred             HHHHHHHHHHHHHHhcCcCceeEEEEecccccCcccCCCcCCCHHHHHHHHHHhcC----CCceEEeCCCCCCCceEEEe
Confidence            999999999999988 44 6899999999999999999999999999999999998    79999999999989999999


Q ss_pred             cCCCCCC--CCCCceeEEEEecCCCHhhhcccccCCcch----HHHHHHHhCCccccCC-CccccccCCCCcccccccCC
Q 039582          168 ASAEAGS--HVNPVYTLEMCMTGLDRKRASVFYKTNESS----VALMTEDSGIRKILPK-SEICDFEFDPCGYSMNSIEG  240 (361)
Q Consensus       168 ~~~~~~~--~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~----~~~~t~~sgi~~l~p~-~~id~f~F~PCGYSmN~i~~  240 (361)
                      ++.+...  ..++|+|+|||||+||+++|++||+++.++    |.+||+.+||++|+|+ +.||||+|+|||||||||.|
T Consensus       156 ~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~h~~~~~~t~~sgI~~i~P~~~~iddf~F~PCGYSmNgi~~  235 (334)
T TIGR00535       156 AETERETPKIEDPDETLEMLMTGLDKEKASKFFKGPAASTHNLGYQMTKNSGIDKIIPNSAQICDFDFEPCGYSMNAILG  235 (334)
T ss_pred             CCCCccccCCCCCceEeeeecccCCHHHHHhheeCcCCCccchHHHHHHHhChHhhcCCcceeecccccCCcCccccccC
Confidence            8765432  346899999999999999999999999888    9999999999999999 99999999999999999998


Q ss_pred             -CceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCC-CcccccccC--CCCCceecce
Q 039582          241 -DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVG-DEHGDTFML--DLKGYSCGEK  316 (361)
Q Consensus       241 -~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~-~~~~~~~~~--~~~gy~~~~~  316 (361)
                       ++|+|||||||++|||||||||+++....++.+||+|||++|+|++|+||+|+|... ....+....  .+.||++.++
T Consensus       236 ~~~Y~TIHITPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~vt~f~~~~~~~~~~~~~~~~~~~~~y~~~~~  315 (334)
T TIGR00535       236 EKAYSTIHVTPEKGFSYASFESNGIDQGKQDYLDLVLRVLNCFQPSEFSMTVFAKNYQNQSFQKLLSINESLPDYIKLDK  315 (334)
T ss_pred             CCcEEEEEEcCCCCceEEEEeeccCCcccccHHHHHHHHHHhcCCceEEEEEEecCcccchhhhhhhhccccCCccceeE
Confidence             799999999999999999999988877889999999999999999999999998652 221222222  4689999999


Q ss_pred             EEeeCCCCceEEEEEEEec
Q 039582          317 IYEELGNNGSLIYYSFSRA  335 (361)
Q Consensus       317 ~~~~l~~gy~l~y~~f~r~  335 (361)
                      +.++++ ||+|+|++|+|.
T Consensus       316 ~~~~~~-~~~l~y~~f~~~  333 (334)
T TIGR00535       316 QELDLG-DYHLFYQKFQKK  333 (334)
T ss_pred             EEecCC-CeeEEEEEEEec
Confidence            999999 699999999885

This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site.

>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine

Probab=100.00  E-value=1.8e-122  Score=905.00  Aligned_cols=325  Identities=48%  Similarity=0.776  Sum_probs=262.8

Q ss_pred             CCCCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEEecc
Q 039582            6 SAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTC   85 (361)
Q Consensus         6 s~~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTC   85 (361)
                      |+.+|||+||||||||.++.....+.+.|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||||
T Consensus         1 s~~~FEG~EK~LEi~F~~~~~~~~~~~~~LR~i~~~~w~~~L~~a~C~Ils~~sn~~~dAYvLSESSLFV~~~kiilKTC   80 (331)
T PF01536_consen    1 STDFFEGPEKRLEIWFSPPSVFSEPSARGLRSIPREFWDEMLDLAGCEILSEISNEHMDAYVLSESSLFVYPHKIILKTC   80 (331)
T ss_dssp             -------SEEEEEEEEE----------S-GGGS-HHHHHHHHHHCT-EEEEEEE-SSEEEEEEETEEEEEETTEEEEEEE
T ss_pred             CCCCccccceEEEEEEecCCcCCCCCccccccCCHHHHHHHHHhcCCEEEEEEccCceeEEEccCceEEEECCEEEEEEc
Confidence            57899999999999999865545567899999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhchHHHHHHHHhhcCceeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCCcEEE
Q 039582           86 GTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHV  165 (361)
Q Consensus        86 GTT~LL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~~W~l  165 (361)
                      ||||||+|||+||++|++++.+|+||+||||||+||++|++||++|++||++|+++|+    +|+||++|++|++|||||
T Consensus        81 GtT~Ll~~l~~ll~la~~~~~~v~~v~YsRknf~~P~~Q~~ph~sf~~Ev~~L~~~F~----~G~aY~~G~~~~d~~wyl  156 (331)
T PF01536_consen   81 GTTTLLKALPPLLELAKELGDEVEWVFYSRKNFMFPELQPSPHRSFEEEVAYLDSFFP----SGKAYVMGPLDSDHHWYL  156 (331)
T ss_dssp             TTS-GGGGHHHHHHHHHHCC-EEEEEEEEEE--SSGGGS-TTSSSHHHHHHHHHCCHT----SEEEEEECSTTSS-EEEE
T ss_pred             cchhHHHHHHHHHHHHHHhccceeEEEEecccCCCcccCCCccCCHHHHHHHHHHHCC----CCcEEEeCCCCCCceEEE
Confidence            9999999999999999999999999999999999999999999999999999999998    799999999999779999


Q ss_pred             EecCCCCCCCCCCceeEEEEecCCCHhhhcccccCCcchHHHHHHHhCCccccCCCccc-cccCCCCcccccccCCCceE
Q 039582          166 YSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEIC-DFEFDPCGYSMNSIEGDAVS  244 (361)
Q Consensus       166 y~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~t~~sgi~~l~p~~~id-~f~F~PCGYSmN~i~~~~Y~  244 (361)
                      |+++......+++|+|||||||+|||++|++||+++.++|.+||+.+||++|+|++.|| ||+|+|||||||||.|+.|+
T Consensus       157 y~~~~~~~~~~~~D~TLEILMt~Ld~~~~~~F~~~~~~~~~~~t~~sgi~~l~p~~~i~~~f~F~PCGYS~N~~~~~~Y~  236 (331)
T PF01536_consen  157 YTADTPESSSSEPDQTLEILMTDLDPEVASQFYRSESQSGEEITKASGIDDLFPGFEIDDDFLFEPCGYSMNGIDGDRYY  236 (331)
T ss_dssp             EEEESSS-S-SS--EEEEEEEECE-HHHHHCCC-BTTB-HHHHHHHTTGGGCSTTSEEE-EEE-SSC-EEEEEECTTEEE
T ss_pred             EecCccccccCCCccchhhhhccCCHHHHHHHhcCCCccHHHHHHhhhhhcccCCcccccccccCCccccccCCCCCeEE
Confidence            99987654446899999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             EEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCc--ccccccCC--CCCceecceEEee
Q 039582          245 TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDE--HGDTFMLD--LKGYSCGEKIYEE  320 (361)
Q Consensus       245 TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~--~~~~~~~~--~~gy~~~~~~~~~  320 (361)
                      |||||||++|||||||||+++....++.++|+|||++|||++|+||+|+......  ......++  ..+|++.|++.++
T Consensus       237 TIHVTPE~~~SYaSFEtn~~~~~~~~~~~li~~vl~~F~P~~f~~t~f~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  316 (331)
T PF01536_consen  237 TIHVTPEEGFSYASFETNVYDFSQESYDDLIRKVLNIFKPGKFSVTLFASSNAEKDSESKLFDLDPKGYGYKRTDRQEYD  316 (331)
T ss_dssp             EEEEE--TTS-EEEEEEES--TTTS-CHHHHHHHHHHH-ECEEEEEEEECTSSHHHCCCSHC-BTTTTEEEEEEEEEEEC
T ss_pred             EEEECCCCCceEEEEEeccCCcCcCCHHHHHHHHHheeCCcEEEEEEEecCCCcchhhhhccccccccccccceeEEEcc
Confidence            9999999999999999998777788999999999999999999999997432211  12222233  4469999999999


Q ss_pred             CCCCceEEEEEEEec
Q 039582          321 LGNNGSLIYYSFSRA  335 (361)
Q Consensus       321 l~~gy~l~y~~f~r~  335 (361)
                      |+ ||+|+|++|+|.
T Consensus       317 ~~-~y~lvy~~f~k~  330 (331)
T PF01536_consen  317 FD-GYDLVYASFEKK  330 (331)
T ss_dssp             EC-CEEEEEEEEEE-
T ss_pred             CC-CceEEEEEEEEc
Confidence            98 799999999985

The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....

>KOG0788 consensus S-adenosylmethionine decarboxylase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-121  Score=875.45  Aligned_cols=328  Identities=55%  Similarity=0.877  Sum_probs=306.5

Q ss_pred             CCCCCCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEEe
Q 039582            4 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIK   83 (361)
Q Consensus         4 ~~s~~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK   83 (361)
                      ++++.+|||+||||||||.+|..+.++++.|||+|+|++||+||+.|+|+|||.++|+.+||||||||||||||+|||||
T Consensus         1 ~~~a~~FEG~EKlLEvwF~~~~~~~~~~~~~LR~i~rs~~DeiL~~v~C~IvS~~~n~~~dayvLSESSlFV~~~kiIlK   80 (334)
T KOG0788|consen    1 AVSATGFEGPEKLLEVWFFEPKKFSDKGGKGLRAISKSQWDEILKEVQCTIVSSLKNDEIDAYVLSESSLFVFKRKIILK   80 (334)
T ss_pred             CCcccccccchheEEEEEccCccccccCCccccccChhHHHHHhhhhceeEEeecccchhhhheecccceeEeeeEEEEE
Confidence            46778999999999999998887777888999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhchHHHHHHHHhhcC-ceeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCCc
Q 039582           84 TCGTTKLLLSIPAILKLSESLS-LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKR  162 (361)
Q Consensus        84 TCGTT~LL~~l~~ll~la~~~~-~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~~  162 (361)
                      |||||+||+||++||+||.++| ..|.+|+||||||+||..|++||++|.+||++|+++|+    +|+||+||+.++.+|
T Consensus        81 TCGTT~lL~sL~pLlkLA~~~~~~~v~~v~YSRknFl~P~~Q~~pH~sf~eEV~~L~~~F~----~g~ay~mG~~~~s~~  156 (334)
T KOG0788|consen   81 TCGTTLLLKALVPLLKLAGELSFDSVQSVFYSRKNFLFPGAQPYPHTSFDEEVEYLDKFFP----NGKAYCMGLNMNSKC  156 (334)
T ss_pred             eccchhHHHHHHHHHHHHHHhcccchHhheeccccccCcccCCCCCcCHHHHHHHHHHhcC----CCceEEecCCCCCCc
Confidence            9999999999999999999999 67999999999999999999999999999999999998    899999996566799


Q ss_pred             EEEEecCCCCCC--CCCCceeEEEEecCCCHhhhcccccCCcchHHHHHHHhCCccccCCCccccccCCCCcccccccCC
Q 039582          163 WHVYSASAEAGS--HVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG  240 (361)
Q Consensus       163 W~ly~~~~~~~~--~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~  240 (361)
                      ||||+++++...  ..+||+|||||||+|||++|.+||+.+..+|.+||+.||||+|+|+++||||+|+||||||||+.+
T Consensus       157 W~lys~~~~~e~~~~~~~d~TlEvlMt~LD~e~a~~Fyk~~~~~a~~mT~~SGI~~I~p~s~iddf~F~PCGYSmN~~~~  236 (334)
T KOG0788|consen  157 WHLYSASADDESNVIDEPDYTLEVCMTELDPEKASVFYKNNAVSAKEMTDESGIDDILPGSVIDDFAFEPCGYSMNGIDG  236 (334)
T ss_pred             eEEEeccccccccccCCCceeHHHHHhhhChhhhheeecccccccccchhhcchhhcCCcceeeccccccccccccCcCC
Confidence            999999876433  478999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCcccccccCC--CCCceecceEE
Q 039582          241 DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLD--LKGYSCGEKIY  318 (361)
Q Consensus       241 ~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~~~~~~~~~--~~gy~~~~~~~  318 (361)
                      ++|+|||||||++|||||||||++++...++.++|+|||+||+|++|+||+|+|..++..+.....+  ..+|++.+.+.
T Consensus       237 d~y~TIHVTPE~~fSYaSFEt~~~~~~~~~~~~li~kvl~~F~P~kfs~t~f~n~~~~~~~~~~~~~~~~~~~kr~~~~~  316 (334)
T KOG0788|consen  237 DAYSTIHVTPEDGFSYASFETVGYDQGLLDLSELISKVLNCFKPNKFSVTVFANYGSESYKHLLSKDVERYGYKRRDMQS  316 (334)
T ss_pred             ceEEEEEeccccCceEEEEEeeccccccccHHHHHHHHHHhcCcCcEEEEEEeeccchhhhhhhhhhhhhhhheeceeeE
Confidence            9999999999999999999999999999999999999999999999999999998776544333333  34489999999


Q ss_pred             eeCCCCceEEEEEEEecC
Q 039582          319 EELGNNGSLIYYSFSRAD  336 (361)
Q Consensus       319 ~~l~~gy~l~y~~f~r~~  336 (361)
                      +.|+ +|+|+|++|++..
T Consensus       317 ~~~~-~~~l~y~~f~k~~  333 (334)
T KOG0788|consen  317 LGFE-SYTLVYQSFTKKG  333 (334)
T ss_pred             ecCC-CceEEEEEeeecc
Confidence            9999 6999999999865

>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form

Probab=95.70  E-value=0.038  Score=47.19  Aligned_cols=80  Identities=20%  Similarity=0.255  Sum_probs=59.9

Q ss_pred             HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582          206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA  285 (361)
Q Consensus       206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~  285 (361)
                      .+..+..|..-+    .+.-+.|+|.|+|.=+|..+...+||.=||.+  ||.+..=-++ ...++...++-+.+.|+|.
T Consensus        30 ~~a~~~~g~ti~----~~~~h~F~p~Gvt~v~llaESHisiHTwPE~g--yaavDiftCg-~~~~p~~a~~~l~~~f~~~  102 (112)
T TIGR03330        30 LEAAKVAGATLV----ASHFHKFSPGGVSGVVLLAESHISIHTWPEYG--YAAVDVFTCG-DHSDPEKAFEYLVEALKPK  102 (112)
T ss_pred             HHHHHHcCCEEE----EEEEEEcCCCcEEEEEEecccEEEEEeccCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence            455555554422    34678999999999999999999999999986  4555542112 2247889999999999999


Q ss_pred             eEEEEEe
Q 039582          286 EFSVALH  292 (361)
Q Consensus       286 ~f~vtl~  292 (361)
                      +..++..
T Consensus       103 ~~~~~~~  109 (112)
T TIGR03330       103 RVEVREL  109 (112)
T ss_pred             eEEEEEE
Confidence            9998743

Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).

>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis

Probab=94.97  E-value=0.023  Score=47.56  Aligned_cols=78  Identities=18%  Similarity=0.316  Sum_probs=57.2

Q ss_pred             HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582          206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA  285 (361)
Q Consensus       206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~  285 (361)
                      .+..+..|+.-+    .+.-+.|+|=|+|.=++..+...+||.=||.++-++-.=|.  +  ..+...+++.+.+.|+|.
T Consensus        25 ~~a~~~~g~~~~----~~~~~~f~p~GvT~~~ll~ESHisiHTwPE~~~~avDiftC--~--~~~p~~a~~~l~~~f~~~   96 (106)
T PF02675_consen   25 RDAAKAAGLTVL----SISFHKFEPQGVTGVALLAESHISIHTWPEHGYAAVDIFTC--G--EFDPEKAIEYLKKAFKPD   96 (106)
T ss_dssp             HHHHHHCT-EEE----EEEEEE-SSS-EEEEEEETTEEEEEEEEGGGTEEEEEEEEE--S--THHHHHHHHHHHHHHT-S
T ss_pred             HHHHHHcCCEEE----EEEEEEcCCCcEEEEEEhhccEEEEEeCCCcCeEEEEEEEc--C--CCCHHHHHHHHHHHhCCC
Confidence            455556666443    24778999999999999999999999999999544444343  2  247888999999999999


Q ss_pred             eEEEEE
Q 039582          286 EFSVAL  291 (361)
Q Consensus       286 ~f~vtl  291 (361)
                      ++.++.
T Consensus        97 ~~~~~~  102 (106)
T PF02675_consen   97 KVKITE  102 (106)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999884

S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.

>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated

Probab=94.75  E-value=0.098  Score=46.52  Aligned_cols=82  Identities=21%  Similarity=0.266  Sum_probs=62.1

Q ss_pred             HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582          206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA  285 (361)
Q Consensus       206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~  285 (361)
                      .+..+..|..-+    .+..+.|+|=|+|.-+|..+...+||.=||.+  ||.+..=-++ ...+....++.+.+.|+|.
T Consensus        31 ~~Aa~~~gatil----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDIftCg-~~~~p~~a~~~L~~~f~~~  103 (139)
T PRK04025         31 LEAAKRGNMEVK----ASYFFKFSPTGVSGVVIVAESHISVHTWPEKG--YAALDVYTCG-EKADPEKAVDYILEQFKAK  103 (139)
T ss_pred             HHHHHHcCCeEE----EEEEEEcCCCcEEEEEEeccceEEEEecccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence            455555664432    35779999999999999999999999999975  4555541122 2247889999999999999


Q ss_pred             eEEEEEeec
Q 039582          286 EFSVALHSD  294 (361)
Q Consensus       286 ~f~vtl~~~  294 (361)
                      +..++.+..
T Consensus       104 ~~~~~~l~R  112 (139)
T PRK04025        104 YAHVSEIKR  112 (139)
T ss_pred             eEEEEEEeC
Confidence            999995543

>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated

Probab=94.37  E-value=0.11  Score=45.14  Aligned_cols=80  Identities=20%  Similarity=0.354  Sum_probs=60.6

Q ss_pred             HHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCe
Q 039582          207 LMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAE  286 (361)
Q Consensus       207 ~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~  286 (361)
                      +..+..|..-+    .+..+.|+|=|.|.=+|..+...+||.=||.+  ||.+..=-++ ...++...++.+.+.|+|.+
T Consensus        34 ~aa~~~g~tiv----~~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~~  106 (123)
T PRK01706         34 EAADLSGAHVL----NVSTKEFDPQGVTVLVLLSESHLSIHTYPEKN--FAAIDCYTCG-TTVEPQIAIDYIVSILKPNE  106 (123)
T ss_pred             HHHHHcCCeEE----EEEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecC-CCCCHHHHHHHHHHHhCCCe
Confidence            44444554322    35779999999999999999999999999976  6666652122 22478899999999999999


Q ss_pred             EEEEEee
Q 039582          287 FSVALHS  293 (361)
Q Consensus       287 f~vtl~~  293 (361)
                      ..++...
T Consensus       107 ~~~~~~~  113 (123)
T PRK01706        107 MHIKRLI  113 (123)
T ss_pred             EEEEEEe
Confidence            9998543

>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional

Probab=93.59  E-value=0.25  Score=43.98  Aligned_cols=81  Identities=15%  Similarity=0.261  Sum_probs=61.4

Q ss_pred             HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582          206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA  285 (361)
Q Consensus       206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~  285 (361)
                      .+..+..|..-+    .+..+.|+|=|+|.-+|..+...+||.=||.+  ||.+..=-++ ...+....++.+.+.|+|.
T Consensus        44 ~~Aa~~~gativ----~~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg-~~~~p~~a~~~L~~~l~~~  116 (139)
T PRK02770         44 TEAAKRAGATLL----NLITHRFEPQGVTALALLAESHISIHTWPESG--YAAVDVFTCG-DHTMPEKACQYLIEELMAK  116 (139)
T ss_pred             HHHHHHcCCEEE----EEEeEEcCCCeEEEEEEecccEEEEEeCcCCC--cEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence            455556664422    35789999999999999999999999999975  5555541122 2347889999999999999


Q ss_pred             eEEEEEee
Q 039582          286 EFSVALHS  293 (361)
Q Consensus       286 ~f~vtl~~  293 (361)
                      +..++-+.
T Consensus       117 ~~~~~~~~  124 (139)
T PRK02770        117 RHSLRSIE  124 (139)
T ss_pred             eEEEEEEe
Confidence            99998544

>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional

Probab=93.55  E-value=0.19  Score=44.03  Aligned_cols=81  Identities=17%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582          206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA  285 (361)
Q Consensus       206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~  285 (361)
                      .+..+.+|.. ++   .+..+.|+|=|.|.=+|..+...+||.=||.  .||.+..=-++ ...+....++.+.+.|+|.
T Consensus        31 ~~a~~~~g~t-il---~~~~h~F~p~GvTgv~llaESHisIHTwPE~--gyaavDiftCg-~~~~p~~a~~~L~~~f~~~  103 (127)
T PRK03124         31 VDAALEAGAE-VR---EVAFHKFSPQGVSGVVVISESHLTIHTWPEL--GYAAVDVFTCG-DRVDPWDACNYIAEGLGAK  103 (127)
T ss_pred             HHHHHHcCCe-EE---EEEeEEcCCCcEEEEEEeeccEEEEEeCccC--CeEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence            3455555643 22   3577999999999999999999999999996  56666652122 2247889999999999999


Q ss_pred             eEEEEEee
Q 039582          286 EFSVALHS  293 (361)
Q Consensus       286 ~f~vtl~~  293 (361)
                      +..++.+.
T Consensus       104 ~~~~~~~~  111 (127)
T PRK03124        104 TREAIELK  111 (127)
T ss_pred             eEEEEEEe
Confidence            99988544

>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional

Probab=92.65  E-value=0.38  Score=42.39  Aligned_cols=82  Identities=15%  Similarity=0.231  Sum_probs=61.4

Q ss_pred             HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582          206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA  285 (361)
Q Consensus       206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~  285 (361)
                      .+..+.+|..- +   .+..+-|+|=|.|.=+|..+...+||.=||.  .||.+..=-++ ...+....++-+.+.|+|.
T Consensus        32 ~~aa~~~g~ti-v---~~~~h~F~p~GvTgv~lLaESHisIHTwPE~--gyaavDiftCg-~~~~p~~a~~~L~~~f~~~  104 (131)
T PRK01236         32 EGAVKYAELTK-I---SSHYYQFNPHGATGVVLLAESHISIHTWPEY--GLVTLDVYTCG-DPSKADKAFEYIIKKLKPK  104 (131)
T ss_pred             HHHHHHCCCEE-E---EEEEEEcCCCcEEEEEEeeccEEEEEeCccC--CeEEEEEEecC-CCCCHHHHHHHHHHHhCCC
Confidence            45555566432 2   3467899999999999999999999999996  45666552122 2246889999999999999


Q ss_pred             eEEEEEeec
Q 039582          286 EFSVALHSD  294 (361)
Q Consensus       286 ~f~vtl~~~  294 (361)
                      +..++.+..
T Consensus       105 ~~~~~~l~R  113 (131)
T PRK01236        105 RVDHKVLER  113 (131)
T ss_pred             eEEEEEEec
Confidence            999985443

>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional

Probab=90.92  E-value=1  Score=39.47  Aligned_cols=81  Identities=17%  Similarity=0.267  Sum_probs=60.5

Q ss_pred             HHHHHHhCCccccCCCccccccCCC-CcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCC
Q 039582          206 ALMTEDSGIRKILPKSEICDFEFDP-CGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKP  284 (361)
Q Consensus       206 ~~~t~~sgi~~l~p~~~id~f~F~P-CGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P  284 (361)
                      .+..+..|..-+    .+.-+.|.| =|+|.=+|..+...+||.=||.++-.+-.=|.  + ...+....++.+.+.|+|
T Consensus        42 ~~aa~~~g~til----~~~~h~F~p~~GvT~v~lLaESHisIHTwPE~gyaavDiftC--g-~~~~p~~a~~~L~~~f~~  114 (127)
T PRK00458         42 KEAAKIANMTLL----DIKSWKFGKKGGVSVIALVLESHIAIHTWPEYNFATVDVYTC--G-EHTDPQKAFEYIVSKLKP  114 (127)
T ss_pred             HHHHHHcCCEEE----EEEEEECCCCCCEEEEEEecccEEEEEeCcCCCcEEEEEEec--C-CCCCHHHHHHHHHHHhCC
Confidence            455555664432    346789998 89999999999999999999975544433333  2 223788999999999999


Q ss_pred             CeEEEEEee
Q 039582          285 AEFSVALHS  293 (361)
Q Consensus       285 ~~f~vtl~~  293 (361)
                      .+..++.+.
T Consensus       115 ~~~~~~~~~  123 (127)
T PRK00458        115 KRYTVNYAD  123 (127)
T ss_pred             CEEEEEEEe
Confidence            999998654

>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]

Probab=88.93  E-value=0.62  Score=41.43  Aligned_cols=70  Identities=24%  Similarity=0.343  Sum_probs=57.4

Q ss_pred             ccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecC
Q 039582          222 EICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDI  295 (361)
Q Consensus       222 ~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~  295 (361)
                      .+.-+.|.|=|=|-=.|..+..-|||.=||-+  ||..+.--+. ...+...-++-+++-|+|.++++- ..++
T Consensus        53 ~~~~~~f~p~GvSgvvliaESHitiHTwPEyg--~A~iDVyTCG-~~~~p~~A~~yi~~~L~p~~v~v~-~~~R  122 (136)
T COG1586          53 NIAFHKFSPQGVSGVVLIAESHITIHTWPEYG--YATIDVYTCG-DHIDPLKAFNYLVEQLKPKRVTVD-YRDR  122 (136)
T ss_pred             EEEeEEecCCCeEEEEEEEeeeeeEecCCccC--ceEEEEEccC-CCCCHHHHHHHHHHHhCCcEEEEE-EEec
Confidence            36889999999999999999999999999999  8888862111 125778889999999999999987 3443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
1mhm_A	288	Crystal Structure Of S-Adenosylmethionine Decarboxy		1e-105
1msv_A	354	The S68a S-adenosylmethionine Decarboxylase Proenzy		2e-38
1jl0_A	334	Structure Of A Human S-Adenosylmethionine Decarboxy		4e-37
1mhm_B	72	Crystal Structure Of S-Adenosylmethionine Decarboxy		3e-27
3ep3_A	260	Human Adometdc D174n Mutant With No Putrescine Boun		2e-25
1jen_A	267	Human S-Adenosylmethionine Decarboxylase Length = 2		2e-25
3h0v_A	266	Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio)		2e-25
3dz2_A	267	Human Adometdc With 5'-[(3-Aminopropyl)methylamino]		2e-25
3ep9_A	260	Human Adometdc With No Putrescine Bound Length = 26		2e-25
3ep5_A	260	Human Adometdc E178q Mutant With No Putrescine Boun		4e-25
3ep4_A	260	Human Adometdc E256q Mutant With No Putrescine Boun		4e-25
1i72_A	267	Human S-Adenosylmethionine Decarboxylase With Coval		4e-25
3dz3_A	267	Human Adometdc F223a Mutant With Covalently Bound S		2e-24
1i7m_A	267	Human S-Adenosylmethionine Decarboxylase With Coval		5e-22
1jen_B	67	Human S-Adenosylmethionine Decarboxylase Length = 6		4e-05
1i7m_B	67	Human S-Adenosylmethionine Decarboxylase With Coval		4e-05

>pdb|1MHM|A Chain A, Crystal Structure Of S-Adenosylmethionine Decarboxylase From Potato Length = 288

Iteration: 1
 Score =  379 bits (973), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/278 (66%), Positives = 215/278 (77%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSF 131
           SLFVY YK+IIKTCGTTKLLL+IP I          V+ VRYTRGSFIF GAQ FPHR F
Sbjct: 2   SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHF 61
Query: 132 SEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDR 191
           SEEVAVLDG+FGK    S A +MGSPD T++WHVYSASA +    +PVYTLEMCMTGLDR
Sbjct: 62  SEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDR 121
Query: 192 KRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPE 251
           ++ASVFYKT ESS A MT  SGIRKILPKSEICDFEF+PCGYSMNSIEG AVSTIH+TPE
Sbjct: 122 EKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPE 181
Query: 252 DGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGY 311
           DGF+YASFE+VGY+ + ++L PL+ERVLACF+PAEFSVALH+D+          +D+KGY
Sbjct: 182 DGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKGY 241
Query: 312 SCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 349
           S  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct: 242 SLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCW 279

>pdb|1MSV|A Chain A, The S68a S-adenosylmethionine Decarboxylase Proenzyme Processing Mutant. Length = 354

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 153/286 (53%), Gaps = 12/286 (4%)
Query: 10  FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
           FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLS
Sbjct: 7   FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 70  ESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFP 127
           E+S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +P
Sbjct: 67  EASMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126
Query: 128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCM 186
           HR+F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M
Sbjct: 127 HRNFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILM 181
Query: 187 TGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAV-ST 245
           + LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    T
Sbjct: 182 SELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWT 241
Query: 246 IHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           IH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 242 IHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284

>pdb|1JL0|A Chain A, Structure Of A Human S-Adenosylmethionine Decarboxylase Self-Processing Ester Intermediate And Mechanism Of Putrescine Stimulation Of Processing As Revealed By The H243a Mutant Length = 334

Iteration: 1
 Score =  152 bits (383), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 151/286 (52%), Gaps = 12/286 (4%)
Query: 10  FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
           FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLS
Sbjct: 7   FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 70  ESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFP 127
           ESS+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +P
Sbjct: 67  ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 126
Query: 128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCM 186
           HR+F EE+  L+  F     +   + MG   N+  W++Y+    E+     P  TLE+ M
Sbjct: 127 HRNFQEEIEFLNAIFP----NGAGYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILM 181
Query: 187 TGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAV-ST 245
           + LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    T
Sbjct: 182 SELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWT 241
Query: 246 IHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           I +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 242 IAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284

>pdb|1MHM|B Chain B, Crystal Structure Of S-Adenosylmethionine Decarboxylase From Potato Length = 72

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 64/70 (91%)
Query: 1  MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
          M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN
Sbjct: 3  MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSN 62
Query: 61 EHLDSYVLSE 70
          +++DSYVLSE
Sbjct: 63 DYVDSYVLSE 72

>pdb|3EP3|A Chain A, Human Adometdc D174n Mutant With No Putrescine Bound Length = 260

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ 
Sbjct: 61  NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPNQTLEILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 176 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216

>pdb|1JEN|A Chain A, Human S-Adenosylmethionine Decarboxylase Length = 267

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR
Sbjct: 2   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ 
Sbjct: 62  NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH
Sbjct: 117 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217

>pdb|3H0V|A Chain A, Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio) Adenosine Length = 266

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ 
Sbjct: 61  NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 176 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216

>pdb|3DZ2|A Chain A, Human Adometdc With 5'-[(3-Aminopropyl)methylamino]-5'deoxy- 8-Methyladenosine Length = 267

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR
Sbjct: 2   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ 
Sbjct: 62  NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH
Sbjct: 117 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217

>pdb|3EP9|A Chain A, Human Adometdc With No Putrescine Bound Length = 260

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ 
Sbjct: 61  NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 176 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216

>pdb|3EP5|A Chain A, Human Adometdc E178q Mutant With No Putrescine Bound Length = 260

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TL++ M+ 
Sbjct: 61  NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLQILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 176 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216

>pdb|3EP4|A Chain A, Human Adometdc E256q Mutant With No Putrescine Bound Length = 260

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR
Sbjct: 1   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ 
Sbjct: 61  NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 115
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH
Sbjct: 116 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 175
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SF+    +        L+ +V+  FKP +F   L
Sbjct: 176 ITPEPEFSYVSFQT---NLSQTSYDDLIRKVVEVFKPGKFVTTL 216

>pdb|1I72|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently Bound Pyruvoyl Group And Covalently Bound 5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl) Amino]adenosine Length = 267

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR
Sbjct: 2   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +   + MG   N+  W++Y+    E+     P  TLE+ M+ 
Sbjct: 62  NFQEEIEFLNAIFP----NGAGYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH
Sbjct: 117 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217

>pdb|3DZ3|A Chain A, Human Adometdc F223a Mutant With Covalently Bound S- Adenosylmethionine Methyl Ester Length = 267

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR
Sbjct: 2   SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +  A+ MG   N+  W++Y+    E+     P  TLE+ M+ 
Sbjct: 62  NFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I     +PCGYSMN ++ D    TIH
Sbjct: 117 LDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMANPCGYSMNGMKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217

>pdb|1I7M|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently Bound Pyruvoyl Group And Complexed With 4-Amidinoindan-1-One-2'- Amidinohydrazone Length = 267

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 12/224 (5%)
Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXX--XXVRSVRYTRGSFIFAGAQPFPHR 129
           S FV   + I+KTCGTT LL ++  +            ++S  Y+R +F     Q +PHR
Sbjct: 2   SXFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFXKPSHQGYPHR 61
Query: 130 SFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTLEMCMTG 188
           +F EE+  L+  F     +   +  G   N+  W++Y+    E+     P  TLE+  + 
Sbjct: 62  NFQEEIEFLNAIFP----NGAGYCXGR-XNSDCWYLYTLDFPESRVISQPDQTLEILXSE 116
Query: 189 LDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIH 247
           LD      FY  +  +   +T +SGIR ++P S I    F+PCGYS N  + D    TIH
Sbjct: 117 LDPAVXDQFYXKDGVTAKDVTRESGIRDLIPGSVIDATXFNPCGYSXNGXKSDGTYWTIH 176
Query: 248 VTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 291
           +TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct: 177 ITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 217

>pdb|1JEN|B Chain B, Human S-Adenosylmethionine Decarboxylase Length = 67

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
          FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLS
Sbjct: 7  FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 70 E 70
          E
Sbjct: 67 E 67

>pdb|1I7M|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently Bound Pyruvoyl Group And Complexed With 4-Amidinoindan-1-One-2'- Amidinohydrazone Length = 67

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 10 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
          FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLS
Sbjct: 7  FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 66
Query: 70 E 70
          E
Sbjct: 67 E 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1mhm_A	288	Adometdc, samdc, S-adenosylmethionine decarboxylas	1e-133
1jl0_A	334	Adometdc, S-adenosylmethionine decarboxylase proen	1e-124
1mhm_B	72	Adometdc, samdc, S-adenosylmethionine decarboxylas	2e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1 Length = 288

 Score =  380 bits (976), Expect = e-133
 Identities = 194/286 (67%), Positives = 230/286 (80%)

Query: 72  SLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSF 131
           SLFVY YK+IIKTCGTTKLLL+IP IL+L+E+LSL V+ VRYTRGSFIF GAQ FPHR F
Sbjct: 2   SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHF 61

Query: 132 SEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDR 191
           SEEVAVLDG+FGK    S A +MGSPD T++WHVYSASA +    +PVYTLEMCMTGLDR
Sbjct: 62  SEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDR 121

Query: 192 KRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPE 251
           ++ASVFYKT ESS A MT  SGIRKILPKSEICDFEF+PCGYSMNSIEG AVSTIH+TPE
Sbjct: 122 EKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPE 181

Query: 252 DGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGY 311
           DGF+YASFE+VGY+ + ++L PL+ERVLACF+PAEFSVALH+D+          +D+KGY
Sbjct: 182 DGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKGY 241

Query: 312 SCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEE 357
           S  E   EE G  GS++Y  F+R     SP+S+LK CW E+EK+ +
Sbjct: 242 SLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCWKEEEKEGK 287

>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ... Length = 334

 Score =  361 bits (927), Expect = e-124
 Identities = 110/336 (32%), Positives = 174/336 (51%), Gaps = 14/336 (4%)

Query: 6   SAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDS 65
           +A  FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++
Sbjct: 3   AAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEA 62

Query: 66  YVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLS--LSVRSVRYTRGSFIFAGA 123
           YVLSESS+FV   + I+KTCGTT LL ++  +LKL+   S   S++S  Y+R +F+    
Sbjct: 63  YVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSH 122

Query: 124 QPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSAS-AEAGSHVNPVYTL 182
           Q +PHR+F EE+  L+  F     +   + MG   N+  W++Y+    E+     P  TL
Sbjct: 123 QGYPHRNFQEEIEFLNAIFP----NGAGYCMGRM-NSDCWYLYTLDFPESRVISQPDQTL 177

Query: 183 EMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDA 242
           E+ M+ LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D 
Sbjct: 178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDG 237

Query: 243 -VSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHG 301
              TI +TPE  FSY SFE    +        L+ +V+  FKP +F   L  +       
Sbjct: 238 TYWTIAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRT 294

Query: 302 DTF-MLDLKGYSCGEKIYEELGNNGSLIYYSFSRAD 336
                  ++G+   +       N+ + ++ SF++  
Sbjct: 295 VLASPQKIEGFKRLDCQSAMF-NDYNFVFTSFAKKQ 329

>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1 Length = 72

 Score =  115 bits (289), Expect = 2e-32
 Identities = 56/70 (80%), Positives = 64/70 (91%)

Query: 1  MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSN 60
          M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN
Sbjct: 3  MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSN 62

Query: 61 EHLDSYVLSE 70
          +++DSYVLSE
Sbjct: 63 DYVDSYVLSE 72

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 59/379 (15%), Positives = 116/379 (30%), Gaps = 113/379 (29%)

Query: 11  EGYEKRLEVSFFEPGVFAD---PGGRGLRSLSKHQLDEILKPAECTIV--------SSLS 59
             Y ++ +  + +  VFA       +    L +  L E L+PA+  ++        + ++
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLE-LRPAKNVLIDGVLGSGKTWVA 167

Query: 60  NEHLDSYVLSESSLFVYPYKVI---IKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRG 116
            +   SY +         +K+    +K C + + +L +   L      + + RS   +  
Sbjct: 168 LDVCLSYKVQC----KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 117 SFIFAGAQP-----FPHRSFSEEVAVLD-----GHFGKFGMDSTAFVMGSPDNTKRWHVY 166
                  Q         + +   + VL        +  F +     +      T+   V 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-----TRFKQVT 278

Query: 167 SA-SAEAGSHVNPVYTLEMCMTGLDRKRA-SVFYKTNESSVALMTEDSGIRKILPKSEIC 224
              SA   +H+    +L+     L      S+                     LP+ E+ 
Sbjct: 279 DFLSAATTTHI----SLDHHSMTLTPDEVKSLL-----LKYLDCRPQD-----LPR-EVL 323

Query: 225 DFEFDPCGYSM--NSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACF 282
               +P   S+   SI  D ++T      D + +     V  D    KLT ++E  L   
Sbjct: 324 TT--NPRRLSIIAESIR-DGLATW-----DNWKH-----VNCD----KLTTIIESSLNVL 366

Query: 283 KPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG--NNGSLIYYSFSRADCSTS 340
           +PAE+                            K+++ L      + I            
Sbjct: 367 EPAEY---------------------------RKMFDRLSVFPPSAHI------------ 387

Query: 341 PRSILKCCWSEDEKDEEVE 359
           P  +L   W +  K  +V 
Sbjct: 388 PTILLSLIWFDVIK-SDVM 405

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
1jl0_A	334	Adometdc, S-adenosylmethionine decarboxylase proen	100.0
1mhm_A	288	Adometdc, samdc, S-adenosylmethionine decarboxylas	100.0
1mhm_B	72	Adometdc, samdc, S-adenosylmethionine decarboxylas	99.96
1vr7_A	142	Adometdc, samdc, S-adenosylmethionine decarboxylas	94.99
2iii_A	135	S-adenosylmethionine decarboxylase proenzyme; two-	94.42

>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...

Probab=100.00  E-value=2.2e-124  Score=915.63  Aligned_cols=323  Identities=32%  Similarity=0.531  Sum_probs=288.9

Q ss_pred             CCCCCCCCcceEEEEEeeCCCCCCCCC-CCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEEe
Q 039582            5 VSAIGFEGYEKRLEVSFFEPGVFADPG-GRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIK   83 (361)
Q Consensus         5 ~s~~~FEG~EK~LEi~F~~~~~~~~~~-~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK   83 (361)
                      .++.+|||+||||||||.++.. ..+. ..|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||
T Consensus         2 ds~~~FEG~EKrLEI~F~~~~~-~~~~~~~~LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIlK   80 (334)
T 1jl0_A            2 EAAHFFEGTEKLLEVWFSRQQP-DANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILK   80 (334)
T ss_dssp             ---CCCCCCCEEEEEEEECCC------CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEE
T ss_pred             CcCCCCcccceEEEEEEecCCc-cccCCCCccccCCHHHHHHHHHhcCCEEEEeecccccceEEeccceeeEECCEEEEE
Confidence            5889999999999999997531 2233 3459999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhchHHHHHHHHhhc-Cc-eeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCC
Q 039582           84 TCGTTKLLLSIPAILKLSESL-SL-SVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTK  161 (361)
Q Consensus        84 TCGTT~LL~~l~~ll~la~~~-~~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~  161 (361)
                      ||||||||+|||+||++|+++ |+ .|++|+||||||+||++|++||++|+|||++|+++|+    +|+||+||++|+ |
T Consensus        81 TCGTT~LL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~eEv~~L~~~F~----~G~aY~~G~~~~-~  155 (334)
T 1jl0_A           81 TCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFP----NGAGYCMGRMNS-D  155 (334)
T ss_dssp             ECTTCCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCS----SEEEEEESCTTS-S
T ss_pred             eCCCCcHHHHHHHHHHHHHHhcCccceeEEEEcccCCCCcccCCCccCCHHHHHHHHHHhcC----CCcEEEeCCCCC-C
Confidence            999999999999999999765 88 7999999999999999999999999999999999997    799999999997 7


Q ss_pred             cEEEEecCCCCC-CCCCCceeEEEEecCCCHhhhcccccCCcchHHHHHHHhCCccccCCCccccccCCCCcccccccCC
Q 039582          162 RWHVYSASAEAG-SHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEG  240 (361)
Q Consensus       162 ~W~ly~~~~~~~-~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~  240 (361)
                      |||||+++.+.. ...++|+|||||||+||+++|++||+++.++|.+||+.+||++|+|++.||||+|+|||||||||.+
T Consensus       156 hw~ly~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~a~~~t~~sgi~~i~P~~~iddf~F~PCGYSmNgi~~  235 (334)
T 1jl0_A          156 CWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKS  235 (334)
T ss_dssp             CEEEEEECCC---CCCSCCEEEEEEEESCCHHHHGGGBCBTTBCHHHHHHHTTCTTSSSSCEEEEEECSSBCEEEEEECT
T ss_pred             eeEEEecCCcccccCCCCcceEEEEccCCCHHHHhhhhcCcCCcHHHHHHHhChhhcCCCcEeeccccCCccceeccccC
Confidence            999999987653 2457899999999999999999999999999999999999999999999999999999999999995


Q ss_pred             -CceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCcccccccCC-CCCceecceEE
Q 039582          241 -DAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLD-LKGYSCGEKIY  318 (361)
Q Consensus       241 -~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~~~~~~~~~-~~gy~~~~~~~  318 (361)
                       ++|+|||||||++|||||||||   +...++.+||+|||++|+|++|+||+|++..++.......++ ++||+|+||+.
T Consensus       236 ~~~Y~TIHVTPE~~~SYaSFETN---~~~~~~~~lv~~Vl~~F~P~~fsvt~f~~~~~~~~~~~~~~~~~~gy~~~d~~~  312 (334)
T 1jl0_A          236 DGTYWTIAITPEPEFSYVSFETN---LSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQS  312 (334)
T ss_dssp             TSCEEEEEEECCTTSCEEEEEEC---CCCSCSHHHHHHHHHHHCCSEEEEEEEEETTCCC-------CCCTTEEEEEEEE
T ss_pred             CCeEEEEEecCCCCCeeEEEEcC---cccccHHHHHHHHHheeCCCeEEEEEEcCCccccchhhhcccCCCCcEeccceE
Confidence             5999999999999999999996   455678999999999999999999999998776554445566 89999999999


Q ss_pred             eeCCCCceEEEEEEEecCC
Q 039582          319 EELGNNGSLIYYSFSRADC  337 (361)
Q Consensus       319 ~~l~~gy~l~y~~f~r~~~  337 (361)
                      ++|+ ||+|+|++|+|.+.
T Consensus       313 ~~~~-~y~l~y~~f~r~~~  330 (334)
T 1jl0_A          313 AMFN-DYNFVFTSFAKKQQ  330 (334)
T ss_dssp             EECS-SEEEEEEEEEECC-
T ss_pred             EecC-CeEEEEEEEEEccc
Confidence            9999 79999999999864

>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1

Probab=100.00  E-value=2.4e-112  Score=816.80  Aligned_cols=288  Identities=67%  Similarity=1.107  Sum_probs=238.3

Q ss_pred             ceeEEeCCEEEEeccCchhhhchHHHHHHHHhhcCceeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcc
Q 039582           71 SSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDST  150 (361)
Q Consensus        71 SSLFV~~~kiILKTCGTT~LL~~l~~ll~la~~~~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~  150 (361)
                      |||||||+|||||||||||||+|||+||++|+++|++|++|+||||||+||++|++||++|+|||++|+++|++|+.+|+
T Consensus         1 SSLFV~~~kiIlKTCGTT~LL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~~~~~G~   80 (288)
T 1mhm_A            1 XSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSK   80 (288)
T ss_dssp             -CEEEETTEEEEEEETTSCGGGGHHHHHHHHHHTTCCEEEEEEEECC-----------CCHHHHHHHHHHHHTTSTTCEE
T ss_pred             CCccccCCEEEEEeCCCccHHHHHHHHHHHHHHcCCceEEEEEecccCCCcccCCCCcCCHHHHHHHHHHHhcccCCCce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             eEEecCCCCCCcEEEEecCCCCCCCCCCceeEEEEecCCCHhhhcccccCCcchHHHHHHHhCCccccCCCccccccCCC
Q 039582          151 AFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDP  230 (361)
Q Consensus       151 aY~~G~~~~~~~W~ly~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~P  230 (361)
                      ||+||++|++||||||+++.......++|+|||||||+||+++|++||++++++|.+||+.+||++|+|+++||||+|+|
T Consensus        81 aY~~G~~~~~~~W~lY~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~sa~~~t~~sGi~~i~P~~~iddf~F~P  160 (288)
T 1mhm_A           81 AVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEP  160 (288)
T ss_dssp             EEEESSSCSSCCEEEEEEESCCCCCSSCCCEEEEEEEEECHHHHHTTSCCSSCCHHHHHHHHTGGGTSTTSEEEEEECSS
T ss_pred             eEEeCCCCCCCceEEEeCCCCcccCCCCcceEEEeecCCCHHHHHhhhccccccHHHHHHHhChhhcCCCcEeeccccCC
Confidence            99999999999999999986543445789999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCcccccccCCCCC
Q 039582          231 CGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKG  310 (361)
Q Consensus       231 CGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~~~~~~~~~~~g  310 (361)
                      ||||||||.|++|+|||||||++|||||||||++|.+..++.+||+|||++|+|++|+||+|+|..++.......++++|
T Consensus       161 CGYSmNgi~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~Vl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~g  240 (288)
T 1mhm_A          161 CGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKG  240 (288)
T ss_dssp             SCEEEEEEETTEEEEEEEECCTTSCEEEEEEESCCTTTSCHHHHHHHHHHHHCEEEEEEEEEESSCHHHHHHHHCCCCTT
T ss_pred             ccceeccccCCceEEEEeCCCCCCeeEEEEecCCCcccccHHHHHHHHHheeCCCEEEEEEEecccchhhhhhccCCcCC
Confidence            99999999999999999999999999999999988887899999999999999999999999997554333333457899


Q ss_pred             ceecceEEeeCCCCceEEEEEEEecCCCCCCccccccccccccchhhh
Q 039582          311 YSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWSEDEKDEEV  358 (361)
Q Consensus       311 y~~~~~~~~~l~~gy~l~y~~f~r~~~~~sp~s~l~~~w~~~~~~~~~  358 (361)
                      |+|.|++.++|++||+|+|++|+|...+|||||+|||||+++++|++|
T Consensus       241 y~~~~~~~~~l~~gy~l~y~~f~~~~~~~~p~~~~~~~~~~~~~~~~~  288 (288)
T 1mhm_A          241 YSLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCWKEEEKEGKE  288 (288)
T ss_dssp             EEEEEEEEEECGGGCEEEEEEEEEC-----------------------
T ss_pred             CeEcccEEEECCCCcEEEEEEEeccCCCCCCcchhhhhhcccccccCC
Confidence            999999999999899999999999989999999999999988877764

>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1

Probab=99.96  E-value=5.2e-31  Score=205.94  Aligned_cols=70  Identities=80%  Similarity=1.253  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccC
Q 039582            1 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSE   70 (361)
Q Consensus         1 ~~~~~s~~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE   70 (361)
                      |++++++++|||+||||||||+++..+.++.+.|||+|||++|++||+.|+|+|||+++|+++|||||||
T Consensus         3 ~~~~~s~~~FEG~EK~LEI~F~~~~~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE   72 (72)
T 1mhm_B            3 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSE   72 (72)
T ss_dssp             ------------CEEEEEEEECCCCCC----CCCGGGCCHHHHHHHHHHHTCEEEEEEECSSCEEEEEEC
T ss_pred             cccCCCCCCcccceEEEEEEEecCCccCCCCcCccccCCHHHHHHHHhhcCCEEEEEecCCcceeEEecC
Confidence            8899999999999999999999776555678899999999999999999999999999999999999998

>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*

Probab=94.99  E-value=0.026  Score=49.00  Aligned_cols=102  Identities=23%  Similarity=0.227  Sum_probs=72.6

Q ss_pred             EEEEecCCCHhhhcccccCCc---chHHHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEE
Q 039582          182 LEMCMTGLDRKRASVFYKTNE---SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYAS  258 (361)
Q Consensus       182 lEilMt~Ld~~~a~~F~~~~~---~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaS  258 (361)
                      +=+=+|+-+++...    +..   ..-.+..+..|..-+    .+.-+.|+|=|+|.=+|..+..-+||.=||.+  ||+
T Consensus        20 li~DlygC~~~~L~----D~e~l~~~l~eAa~~~gatvl----~~~~h~F~P~GvSgvvllaESHIsIHTwPE~g--yAa   89 (142)
T 1vr7_A           20 LVAEFYECDREVLD----NVQLIEQEMKQAAYESGATIV----TSTFHRFLPYGVSGVVVISESHLTIHTWPEYG--YAA   89 (142)
T ss_dssp             EEEEEESCCHHHHT----CHHHHHHHHHHHHHHHTCCEE----EEEEEECSSSCEEEEEEETTEEEEEEEEGGGT--EEE
T ss_pred             EEEEEcCCChHHCC----CHHHHHHHHHHHHHHcCCEEe----EEEEEEcCCCCeEEEEEecccEEEEEeCCCCC--eEE
Confidence            44456777777633    322   233455556665433    34568899999999999999999999999999  566


Q ss_pred             EeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeec
Q 039582          259 FEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSD  294 (361)
Q Consensus       259 FETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~  294 (361)
                      ...=-+. ...++...++-+.+.|+|.+..++....
T Consensus        90 vDVftCg-~~~~P~~a~~~L~~~f~a~~~~~~~~~R  124 (142)
T 1vr7_A           90 IDLFTCG-EDVDPWKAFEHLKKALKAKRVHVVEHER  124 (142)
T ss_dssp             EEEEEES-TTCCHHHHHHHHHHHHTCSEEEEEEEEE
T ss_pred             EEEEccC-CCCCHHHHHHHHHHHhCCCeEEEEEEeC
Confidence            6652111 2247889999999999999999985543

>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}

Probab=94.42  E-value=0.028  Score=48.39  Aligned_cols=82  Identities=17%  Similarity=0.291  Sum_probs=60.5

Q ss_pred             HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582          206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA  285 (361)
Q Consensus       206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~  285 (361)
                      .+..+..|..-+-    +.-+.|+|=|+|.=+|..+..-+||.=||.+  ||+...=-+. ...++...++-+.+.|+|.
T Consensus        32 ~~aa~~~gatvl~----~~~h~F~P~GvSgvvllaESHisIHTwPE~g--yaavDvftCg-~~~~P~~a~~~l~~~f~a~  104 (135)
T 2iii_A           32 EGAVKYANLTKIS----SHYYQFQPHGATGVVLLAESHISIHTWPEHG--LATVDVYTCG-DPSKAYRAMDYIITQLNPK  104 (135)
T ss_dssp             HHHHHHTTCCEEE----EEEEECSSSCEEEEEEEC-CEEEEEEEGGGT--EEEEEEEEES-CHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHcCCEEEE----EEEEEcCCCCeEEEEEecccEEEEEeCCCCC--cEEEEEEccC-CCCCHHHHHHHHHHHhCCC
Confidence            4555555554432    4568899999999999999999999999999  5665541111 1236888999999999999


Q ss_pred             eEEEEEeec
Q 039582          286 EFSVALHSD  294 (361)
Q Consensus       286 ~f~vtl~~~  294 (361)
                      +..++....
T Consensus       105 ~~~~~~~~R  113 (135)
T 2iii_A          105 RIDKQVHER  113 (135)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEeC
Confidence            999985543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
g1mhm.1	323	d.156.1.1 (B:,A:) S-adenosylmethionine decarboxyla	1e-155
d1jl0a_	325	d.156.1.1 (A:) S-adenosylmethionine decarboxylase	1e-135

>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine decarboxylase
superfamily: S-adenosylmethionine decarboxylase
family: S-adenosylmethionine decarboxylase
domain: S-adenosylmethionine decarboxylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  387 bits (996), Expect = e-135
 Identities = 108/332 (32%), Positives = 172/332 (51%), Gaps = 14/332 (4%)

Query: 10  FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLS 69
           FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLS
Sbjct: 3   FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLS 62

Query: 70  ESSLFVYPYKVIIKTCGTTKLLLSIPAILKLSESLS--LSVRSVRYTRGSFIFAGAQPFP 127
           ESS+FV   + I+KTCGTT LL ++  +LKL+   S   S++S  Y+R +F+    Q +P
Sbjct: 63  ESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYP 122

Query: 128 HRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASA-EAGSHVNPVYTLEMCM 186
           HR+F EE+  L+  F     +   + MG  ++   W++Y+    E+     P  TLE+ M
Sbjct: 123 HRNFQEEIEFLNAIFP----NGAGYCMGRMNS-DCWYLYTLDFPESRVISQPDQTLEILM 177

Query: 187 TGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAV-ST 245
           + LD      FY  +  +   +T +SGIR ++P S I    F+PCGYSMN ++ D    T
Sbjct: 178 SELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWT 237

Query: 246 IHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTF- 304
           I +TPE  FSY SFE    +        L+ +V+  FKP +F   L  +           
Sbjct: 238 IAITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLAS 294

Query: 305 MLDLKGYSCGEKIYEELGNNGSLIYYSFSRAD 336
              ++G+   +       N+ + ++ SF++  
Sbjct: 295 PQKIEGFKRLDCQSAMF-NDYNFVFTSFAKKQ 325

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1jl0a_	325	S-adenosylmethionine decarboxylase {Human (Homo sa	100.0
g1mhm.1	323	S-adenosylmethionine decarboxylase {Potato (Solanu	100.0
d1vr7a1	117	S-adenosylmethionine decarboxylase (SamDC, SpeH) {	96.12

>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine decarboxylase
superfamily: S-adenosylmethionine decarboxylase
family: S-adenosylmethionine decarboxylase
domain: S-adenosylmethionine decarboxylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-123  Score=906.29  Aligned_cols=320  Identities=33%  Similarity=0.547  Sum_probs=291.2

Q ss_pred             CCCCCcceEEEEEeeCCCCCCCCCCCCccccCHHHHHHHhcccCCeEEeeeccCcceeeeccCceeEEeCCEEEEeccCc
Q 039582            8 IGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGT   87 (361)
Q Consensus         8 ~~FEG~EK~LEi~F~~~~~~~~~~~~gLR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGT   87 (361)
                      .||||+||||||||+++.....+.+.|||+||+++|++||++|+|+|||+++|++|||||||||||||||||||||||||
T Consensus         1 ~fFEG~EK~LEi~F~~~~~~~~~~~~~LR~i~~~~w~~~L~~a~c~IlS~~sn~~~DAYlLSESSLFV~~~kiiLkTCGT   80 (325)
T d1jl0a_           1 HFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGT   80 (325)
T ss_dssp             CCCCCCCEEEEEEEECCC-----CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEEECTT
T ss_pred             CCCCccceEEEEEEccCCCCCCCCCCCcccCCHHHHHHHHHhcCCEEEEeecccccceEEeechhhheeCCeEEEEECCC
Confidence            58999999999999987655667788999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhchHHHHHHHHhhcC--ceeeEEEEccccccCCCCCCCCCCChHHHHHHHHhhhCCCCCCcceEEecCCCCCCcEEE
Q 039582           88 TKLLLSIPAILKLSESLS--LSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHV  165 (361)
Q Consensus        88 T~LL~~l~~ll~la~~~~--~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~G~aY~~G~~~~~~~W~l  165 (361)
                      ||||+|||+||++|++++  ..|++|+||||||+||++|++||++|+|||++|+++|+    +|+||++|++|+ |||||
T Consensus        81 TtLL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~f~----~G~aY~~G~~~~-~hw~l  155 (325)
T d1jl0a_          81 TLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFP----NGAGYCMGRMNS-DCWYL  155 (325)
T ss_dssp             CCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCS----SEEEEEESCTTS-SCEEE
T ss_pred             ccHHHHHHHHHHHHHHhcCccceeEEEEecccCcCcccCCcccCCHHHHHHHHHHhCC----CCceEEecCCCC-CeEEE
Confidence            999999999999999875  47999999999999999999999999999999999998    799999999997 99999


Q ss_pred             EecCCCCC-CCCCCceeEEEEecCCCHhhhcccccCCcchHHHHHHHhCCccccCCCccccccCCCCcccccccCCC-ce
Q 039582          166 YSASAEAG-SHVNPVYTLEMCMTGLDRKRASVFYKTNESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGD-AV  243 (361)
Q Consensus       166 y~~~~~~~-~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~-~Y  243 (361)
                      |+++.+.. ...++|+|||||||+||+++|++||++.+++|.+||+.+||++|+|++.||||+|+|||||||||.|+ .|
T Consensus       156 y~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~~f~~~~~~~~~~~t~~~gi~~l~p~~~id~f~F~PCGYS~N~i~~~~~Y  235 (325)
T d1jl0a_         156 YTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTY  235 (325)
T ss_dssp             EEECCC---CCCSCCEEEEEEEESCCHHHHGGGBCBTTBCHHHHHHHTTCTTSSSSCEEEEEECSSBCEEEEEECTTSCE
T ss_pred             EecCCcccccCCCCceeeeehhcCCChHHHhhhhccCCCCHHHHHHhcChhhhCCCcEeecccCCCccceeeeecCCCcE
Confidence            99987643 34688999999999999999999999999999999999999999999999999999999999999987 59


Q ss_pred             EEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCCeEEEEEeecCCCCccccccc-CCCCCceecceEEeeCC
Q 039582          244 STIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFM-LDLKGYSCGEKIYEELG  322 (361)
Q Consensus       244 ~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~~f~vtl~~~~~~~~~~~~~~-~~~~gy~~~~~~~~~l~  322 (361)
                      +|||||||++|||||||||   +...++.++|+|||++|+|++|+||+|+|..+........ .+++||+|+|++.++|+
T Consensus       236 ~TiHVTPE~~~SYaSFETN---~~~~~~~~li~~vl~~F~P~~f~vt~f~~~~~~~~~~~~~~~~~~gY~~~d~~~~~~~  312 (325)
T d1jl0a_         236 WTIAITPEPEFSYVSFETN---LSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFN  312 (325)
T ss_dssp             EEEEEECCTTSCEEEEEEC---CCCSCSHHHHHHHHHHHCCSEEEEEEEEETTCCC-------CCCTTEEEEEEEEEECS
T ss_pred             EEEEECCCCCceeEEEecC---cchhhHHHHHHHHHhhcCCceEEEEEEecCCchhhhhhhcccCCCCcceeeeEEEEcC
Confidence            9999999999999999996   4566899999999999999999999999987665443332 35899999999999998


Q ss_pred             CCceEEEEEEEecC
Q 039582          323 NNGSLIYYSFSRAD  336 (361)
Q Consensus       323 ~gy~l~y~~f~r~~  336 (361)
                       ||+|+|++|+|.+
T Consensus       313 -gy~l~y~~y~r~~  325 (325)
T d1jl0a_         313 -DYNFVFTSFAKKQ  325 (325)
T ss_dssp             -SEEEEEEEEEECC
T ss_pred             -CeEEEEEEEEecC
Confidence             8999999999864

>d1vr7a1 d.156.1.2 (A:2-118) S-adenosylmethionine decarboxylase (SamDC, SpeH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine decarboxylase
superfamily: S-adenosylmethionine decarboxylase
family: Bacterial S-adenosylmethionine decarboxylase
domain: S-adenosylmethionine decarboxylase (SamDC, SpeH)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.12  E-value=0.004  Score=49.94  Aligned_cols=81  Identities=25%  Similarity=0.263  Sum_probs=60.2

Q ss_pred             HHHHHHhCCccccCCCccccccCCCCcccccccCCCceEEEEecCCCCCeeEEEeecCCCcCCCCHHHHHHHHhhccCCC
Q 039582          206 ALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPA  285 (361)
Q Consensus       206 ~~~t~~sgi~~l~p~~~id~f~F~PCGYSmN~i~~~~Y~TIHVTPE~~~SYaSFETn~~~~~~~~~~~lv~~vL~~F~P~  285 (361)
                      .++.+..|..-+    .+..+.|.|-|+|+-.+..+...+||+=||.+  ||.+..=.++ ...+...+++.+.+.|+|.
T Consensus        30 ~~~~~~~~~tvl----~~~~~~f~p~G~T~~~ll~eSHisiHTwPE~g--~~~iDifsC~-~~~~~~~~~~~l~~~f~~~  102 (117)
T d1vr7a1          30 KQAAYESGATIV----TSTFHRFLPYGVSGVVVISESHLTIHTWPEYG--YAAIDLFTCG-EDVDPWKAFEHLKKALKAK  102 (117)
T ss_dssp             HHHHHHHTCCEE----EEEEEECSSSCEEEEEEETTEEEEEEEEGGGT--EEEEEEEEES-TTCCHHHHHHHHHHHHTCS
T ss_pred             HHHHHHcCCEEE----eEEeEEecCCcEEEEEEecccEEEEEEcCCCc--eEEEEEEeCC-CCCCHHHHHHHHHHHhCCC
Confidence            345555565432    24567899999999999999999999999987  5555541111 1247889999999999999


Q ss_pred             eEEEEEee
Q 039582          286 EFSVALHS  293 (361)
Q Consensus       286 ~f~vtl~~  293 (361)
                      +..+..+.
T Consensus       103 ~~~~~~~~  110 (117)
T d1vr7a1         103 RVHVVEHE  110 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99988543